Query 009851
Match_columns 524
No_of_seqs 163 out of 1689
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 18:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 7E-66 1.5E-70 526.8 44.4 432 3-492 6-447 (448)
2 PLN02207 UDP-glycosyltransfera 100.0 5.8E-65 1.3E-69 517.7 44.1 444 1-495 1-466 (468)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.1E-65 6.8E-70 520.4 41.9 432 3-494 7-450 (451)
4 PLN02152 indole-3-acetate beta 100.0 5.3E-65 1.1E-69 517.0 43.3 432 1-492 1-454 (455)
5 PLN02555 limonoid glucosyltran 100.0 1.4E-64 3.1E-69 517.2 43.8 446 3-495 7-470 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 1.6E-64 3.4E-69 512.8 42.1 422 3-492 5-446 (449)
7 PLN02554 UDP-glycosyltransfera 100.0 6.7E-64 1.5E-68 518.0 41.4 445 3-496 2-480 (481)
8 PLN02992 coniferyl-alcohol glu 100.0 3.6E-63 7.7E-68 505.5 42.4 430 3-497 5-472 (481)
9 PLN00164 glucosyltransferase; 100.0 3.6E-63 7.9E-68 510.5 42.3 439 1-495 1-474 (480)
10 PLN02210 UDP-glucosyl transfer 100.0 5E-63 1.1E-67 506.3 41.9 429 3-493 8-454 (456)
11 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.6E-63 1.6E-67 506.3 42.3 443 3-496 9-473 (477)
12 PLN03004 UDP-glycosyltransfera 100.0 5.4E-63 1.2E-67 501.8 39.4 431 1-483 1-450 (451)
13 PLN03015 UDP-glucosyl transfer 100.0 2.4E-62 5.3E-67 496.4 41.7 433 1-492 1-466 (470)
14 PHA03392 egt ecdysteroid UDP-g 100.0 2E-63 4.3E-68 515.8 29.7 441 3-524 20-491 (507)
15 PLN02670 transferase, transfer 100.0 9.2E-62 2E-66 494.8 40.2 434 3-496 6-467 (472)
16 PLN02167 UDP-glycosyltransfera 100.0 1.2E-61 2.5E-66 500.5 41.1 446 1-494 1-472 (475)
17 PLN02764 glycosyltransferase f 100.0 2.5E-61 5.5E-66 487.6 41.7 419 3-497 5-448 (453)
18 PLN02448 UDP-glycosyltransfera 100.0 2E-61 4.4E-66 497.8 41.6 430 3-494 10-457 (459)
19 PLN02208 glycosyltransferase f 100.0 1.6E-61 3.4E-66 492.0 39.2 413 1-495 1-440 (442)
20 PLN03007 UDP-glucosyltransfera 100.0 1.6E-60 3.5E-65 493.5 42.2 435 3-494 5-480 (482)
21 PLN02534 UDP-glycosyltransfera 100.0 2.5E-60 5.4E-65 486.6 42.0 439 1-494 5-486 (491)
22 PLN00414 glycosyltransferase f 100.0 9E-60 2E-64 479.6 39.5 412 1-494 1-440 (446)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.5E-63 5.4E-68 524.0 3.6 435 5-524 2-467 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 4.3E-48 9.4E-53 408.2 22.7 453 3-524 5-478 (496)
25 TIGR01426 MGT glycosyltransfer 100.0 1.5E-42 3.3E-47 354.6 34.9 383 10-497 2-391 (392)
26 cd03784 GT1_Gtf_like This fami 100.0 5.9E-43 1.3E-47 359.2 26.7 386 4-494 1-400 (401)
27 COG1819 Glycosyl transferases, 100.0 1.2E-38 2.5E-43 322.2 26.1 395 3-498 1-401 (406)
28 PRK12446 undecaprenyldiphospho 99.9 3E-23 6.6E-28 207.3 28.3 317 4-466 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.9E-22 4E-27 200.6 26.7 305 4-454 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 5.5E-21 1.2E-25 189.7 25.2 126 309-461 188-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 8.9E-19 1.9E-23 173.1 27.6 339 5-495 2-354 (357)
32 PRK00726 murG undecaprenyldiph 99.8 1.6E-17 3.4E-22 168.0 28.8 116 368-497 236-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.9E-16 8.4E-21 157.3 26.3 323 5-466 1-333 (350)
34 TIGR01133 murG undecaprenyldip 99.7 2E-14 4.3E-19 144.8 25.6 89 376-473 243-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 5.2E-15 1.1E-19 150.1 18.6 166 308-485 190-379 (385)
36 PRK13609 diacylglycerol glucos 99.6 3E-13 6.4E-18 137.9 25.9 162 309-496 202-369 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 1.9E-13 4.1E-18 132.4 22.6 103 310-423 171-278 (279)
38 COG4671 Predicted glycosyl tra 99.6 1.8E-13 3.8E-18 129.1 18.9 184 249-458 166-366 (400)
39 PRK13608 diacylglycerol glucos 99.5 1.8E-11 4E-16 124.9 26.6 145 308-473 201-351 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.4 1E-11 2.2E-16 126.7 21.7 108 378-497 256-376 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 1.7E-14 3.6E-19 129.1 -3.0 139 311-460 1-147 (167)
42 PLN02605 monogalactosyldiacylg 99.3 2E-10 4.4E-15 117.0 23.6 111 367-495 265-378 (382)
43 cd03814 GT1_like_2 This family 99.3 2.9E-09 6.2E-14 107.1 31.2 138 310-468 197-343 (364)
44 PF03033 Glyco_transf_28: Glyc 99.3 6E-12 1.3E-16 108.9 9.4 124 6-140 1-133 (139)
45 TIGR03492 conserved hypothetic 99.2 1.8E-09 3.9E-14 109.9 23.1 328 14-465 7-372 (396)
46 cd03818 GT1_ExpC_like This fam 99.2 5.3E-08 1.2E-12 99.9 32.7 87 366-462 280-371 (396)
47 cd03794 GT1_wbuB_like This fam 99.2 9.4E-09 2E-13 104.0 26.6 136 309-464 219-372 (394)
48 PLN02871 UDP-sulfoquinovose:DA 99.2 4.8E-08 1E-12 102.3 32.5 132 310-463 263-406 (465)
49 cd03823 GT1_ExpE7_like This fa 99.2 1.7E-08 3.6E-13 101.3 27.2 138 309-464 190-336 (359)
50 cd03816 GT1_ALG1_like This fam 99.1 1.9E-07 4E-12 96.3 31.7 120 2-136 2-129 (415)
51 COG3980 spsG Spore coat polysa 99.1 3.7E-09 8E-14 97.3 16.6 147 310-472 159-308 (318)
52 cd03800 GT1_Sucrose_synthase T 99.1 7.3E-08 1.6E-12 98.6 28.4 84 366-461 282-372 (398)
53 cd03808 GT1_cap1E_like This fa 99.1 2.3E-07 5E-12 92.6 30.3 140 309-464 187-336 (359)
54 cd03801 GT1_YqgM_like This fam 99.1 2E-07 4.2E-12 93.3 29.6 88 365-464 254-348 (374)
55 cd03817 GT1_UGDG_like This fam 99.1 1.6E-07 3.4E-12 94.5 28.7 132 309-461 201-347 (374)
56 cd04962 GT1_like_5 This family 99.1 1.6E-07 3.4E-12 95.3 27.9 86 366-463 252-342 (371)
57 PRK10307 putative glycosyl tra 99.1 3.4E-07 7.3E-12 94.5 30.5 166 309-497 228-410 (412)
58 PRK05749 3-deoxy-D-manno-octul 99.0 2.2E-07 4.8E-12 96.2 27.7 112 369-496 304-421 (425)
59 TIGR03449 mycothiol_MshA UDP-N 99.0 1.2E-06 2.7E-11 90.0 31.1 87 366-464 282-375 (405)
60 TIGR00236 wecB UDP-N-acetylglu 99.0 3.9E-08 8.4E-13 99.7 19.5 136 310-466 198-343 (365)
61 cd03825 GT1_wcfI_like This fam 99.0 1.2E-06 2.5E-11 88.4 30.2 85 365-461 242-334 (365)
62 cd03795 GT1_like_4 This family 99.0 8.6E-07 1.9E-11 89.1 28.2 135 309-462 190-337 (357)
63 cd03820 GT1_amsD_like This fam 98.9 1.2E-06 2.5E-11 87.1 28.1 93 366-470 234-332 (348)
64 cd03798 GT1_wlbH_like This fam 98.9 2.4E-06 5.3E-11 85.6 29.3 83 366-460 258-347 (377)
65 cd03805 GT1_ALG2_like This fam 98.8 4.7E-06 1E-10 85.2 28.5 83 366-461 279-368 (392)
66 cd03821 GT1_Bme6_like This fam 98.8 7E-06 1.5E-10 82.5 28.3 84 366-463 261-351 (375)
67 cd03796 GT1_PIG-A_like This fa 98.8 1E-05 2.2E-10 83.0 29.7 115 366-497 249-370 (398)
68 TIGR02468 sucrsPsyn_pln sucros 98.8 1E-05 2.3E-10 89.5 30.5 182 298-497 469-673 (1050)
69 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 2.1E-07 4.6E-12 94.2 16.2 135 309-463 198-343 (363)
70 PF04007 DUF354: Protein of un 98.8 1E-05 2.2E-10 79.6 27.3 101 14-137 10-112 (335)
71 TIGR02472 sucr_P_syn_N sucrose 98.8 1.2E-05 2.6E-10 83.6 29.1 96 365-473 315-419 (439)
72 cd03819 GT1_WavL_like This fam 98.7 1.9E-05 4.1E-10 79.3 28.3 139 309-461 184-335 (355)
73 cd03822 GT1_ecORF704_like This 98.7 4.7E-06 1E-10 83.8 23.8 84 366-462 246-339 (366)
74 cd03811 GT1_WabH_like This fam 98.7 1.7E-05 3.8E-10 78.7 27.4 89 366-466 245-341 (353)
75 cd04955 GT1_like_6 This family 98.7 1.8E-05 4E-10 79.6 27.4 128 312-461 195-334 (363)
76 cd05844 GT1_like_7 Glycosyltra 98.7 1.5E-05 3.3E-10 80.5 26.3 86 365-462 243-341 (367)
77 cd03802 GT1_AviGT4_like This f 98.6 1.5E-05 3.2E-10 79.4 25.3 129 311-457 172-308 (335)
78 cd03799 GT1_amsK_like This is 98.6 3E-05 6.5E-10 77.8 26.7 83 366-460 235-330 (355)
79 cd03807 GT1_WbnK_like This fam 98.6 0.00013 2.9E-09 72.8 31.3 80 366-459 250-334 (365)
80 PRK09922 UDP-D-galactose:(gluc 98.6 1.8E-05 3.9E-10 80.0 24.3 134 311-460 181-327 (359)
81 cd03812 GT1_CapH_like This fam 98.5 7.4E-05 1.6E-09 75.1 27.4 89 366-467 248-341 (358)
82 TIGR02149 glgA_Coryne glycogen 98.5 8.9E-05 1.9E-09 75.7 27.6 141 309-462 200-357 (388)
83 TIGR03088 stp2 sugar transfera 98.5 0.00053 1.2E-08 69.6 32.4 83 367-461 255-342 (374)
84 cd04951 GT1_WbdM_like This fam 98.5 0.00013 2.7E-09 73.4 27.5 139 309-471 187-341 (360)
85 PRK01021 lpxB lipid-A-disaccha 98.5 7.1E-06 1.5E-10 85.4 18.4 206 251-475 362-589 (608)
86 TIGR02470 sucr_synth sucrose s 98.5 0.0006 1.3E-08 74.1 33.2 88 366-463 618-719 (784)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.00035 7.7E-09 69.2 28.4 67 389-464 327-393 (419)
88 PF02684 LpxB: Lipid-A-disacch 98.5 2.1E-05 4.5E-10 78.5 20.2 211 251-482 134-365 (373)
89 cd03809 GT1_mtfB_like This fam 98.5 4.2E-05 9E-10 76.8 22.8 91 365-469 251-348 (365)
90 PLN02275 transferase, transfer 98.4 0.00033 7.2E-09 71.1 27.9 75 367-455 286-371 (371)
91 PLN02846 digalactosyldiacylgly 98.3 0.00063 1.4E-08 70.0 27.8 73 371-458 288-364 (462)
92 COG0381 WecB UDP-N-acetylgluco 98.3 0.00013 2.9E-09 71.5 21.3 143 309-472 204-356 (383)
93 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00016 3.6E-09 72.9 22.9 133 309-461 201-342 (365)
94 cd03792 GT1_Trehalose_phosphor 98.3 0.00028 6.2E-09 71.6 24.7 84 366-463 251-343 (372)
95 PLN00142 sucrose synthase 98.2 0.0015 3.3E-08 71.2 28.8 65 389-463 670-742 (815)
96 TIGR03087 stp1 sugar transfera 98.2 0.00029 6.2E-09 72.3 22.7 83 366-462 279-367 (397)
97 PLN02949 transferase, transfer 98.2 0.0025 5.3E-08 66.4 29.0 116 366-497 334-459 (463)
98 cd03804 GT1_wbaZ_like This fam 98.2 0.00011 2.3E-09 74.0 17.7 135 312-466 197-336 (351)
99 PRK14089 ipid-A-disaccharide s 98.2 4.8E-05 1E-09 75.5 14.6 148 309-471 167-332 (347)
100 cd03806 GT1_ALG11_like This fa 98.1 0.00099 2.1E-08 68.8 24.3 79 366-458 304-393 (419)
101 PF02350 Epimerase_2: UDP-N-ac 98.1 1E-05 2.2E-10 80.8 8.9 139 307-466 178-327 (346)
102 KOG3349 Predicted glycosyltran 98.1 1E-05 2.2E-10 67.5 7.1 115 311-434 5-132 (170)
103 PRK00654 glgA glycogen synthas 98.1 0.00069 1.5E-08 71.0 22.3 132 309-456 281-427 (466)
104 cd04950 GT1_like_1 Glycosyltra 98.0 0.0031 6.7E-08 64.1 24.6 79 366-458 253-341 (373)
105 PF13844 Glyco_transf_41: Glyc 98.0 0.0001 2.2E-09 75.1 13.2 169 308-497 283-465 (468)
106 cd03791 GT1_Glycogen_synthase_ 97.9 0.0037 7.9E-08 65.8 25.1 131 309-456 295-441 (476)
107 PRK15179 Vi polysaccharide bio 97.9 0.034 7.5E-07 60.5 32.5 92 366-467 573-673 (694)
108 TIGR02095 glgA glycogen/starch 97.9 0.0067 1.5E-07 63.8 26.0 131 309-456 290-436 (473)
109 PLN02501 digalactosyldiacylgly 97.9 0.0036 7.8E-08 66.4 23.1 79 368-461 602-685 (794)
110 PLN02316 synthase/transferase 97.8 0.026 5.6E-07 63.4 28.7 114 366-489 899-1028(1036)
111 cd04946 GT1_AmsK_like This fam 97.8 0.00085 1.9E-08 69.0 16.3 110 366-487 288-404 (407)
112 COG5017 Uncharacterized conser 97.8 0.00038 8.2E-09 57.2 10.5 109 312-436 2-123 (161)
113 PRK15427 colanic acid biosynth 97.7 0.0014 3E-08 67.4 16.4 112 366-492 278-403 (406)
114 COG0763 LpxB Lipid A disacchar 97.7 0.0071 1.5E-07 59.5 20.1 216 250-488 136-375 (381)
115 cd03813 GT1_like_3 This family 97.6 0.028 6E-07 59.1 25.7 88 366-464 353-449 (475)
116 TIGR02918 accessory Sec system 97.6 0.032 6.9E-07 58.8 24.6 87 366-458 375-468 (500)
117 PF00534 Glycos_transf_1: Glyc 97.6 0.0017 3.7E-08 57.8 13.0 89 365-465 71-166 (172)
118 PRK15484 lipopolysaccharide 1, 97.5 0.0083 1.8E-07 61.1 18.9 115 364-493 254-376 (380)
119 KOG4626 O-linked N-acetylgluco 97.2 0.0017 3.8E-08 66.6 9.8 168 308-494 757-936 (966)
120 PRK10125 putative glycosyl tra 97.1 0.42 9.2E-06 49.1 26.8 116 311-452 242-366 (405)
121 cd01635 Glycosyltransferase_GT 97.1 0.064 1.4E-06 49.4 18.4 26 13-38 12-37 (229)
122 PF13692 Glyco_trans_1_4: Glyc 96.8 0.0057 1.2E-07 51.9 8.0 80 366-457 52-135 (135)
123 PRK09814 beta-1,6-galactofuran 96.8 0.0068 1.5E-07 60.5 9.7 109 365-490 205-331 (333)
124 PF13477 Glyco_trans_4_2: Glyc 96.8 0.025 5.4E-07 48.3 11.7 103 5-136 1-107 (139)
125 cd04949 GT1_gtfA_like This fam 96.7 0.023 4.9E-07 57.6 12.9 85 366-459 260-347 (372)
126 COG1817 Uncharacterized protei 96.7 0.49 1.1E-05 45.3 20.3 104 12-138 8-114 (346)
127 TIGR02193 heptsyl_trn_I lipopo 96.6 0.085 1.8E-06 52.3 15.5 134 309-455 179-319 (319)
128 COG3914 Spy Predicted O-linked 96.2 0.043 9.3E-07 56.5 10.9 171 307-496 427-611 (620)
129 PF13579 Glyco_trans_4_4: Glyc 95.7 0.02 4.3E-07 49.7 5.6 98 18-136 5-104 (160)
130 PRK14098 glycogen synthase; Pr 95.7 0.29 6.2E-06 51.6 14.9 131 309-455 306-449 (489)
131 PRK15490 Vi polysaccharide bio 95.6 0.5 1.1E-05 49.8 15.7 74 366-451 454-532 (578)
132 cd03789 GT1_LPS_heptosyltransf 95.2 1.7 3.7E-05 42.0 17.6 101 5-132 1-104 (279)
133 PF12000 Glyco_trans_4_3: Gkyc 95.0 0.2 4.4E-06 44.2 9.3 94 29-135 1-95 (171)
134 PHA01633 putative glycosyl tra 94.7 1.7 3.7E-05 43.1 16.1 85 365-457 199-307 (335)
135 TIGR02195 heptsyl_trn_II lipop 94.4 3.3 7.1E-05 41.2 17.9 102 5-133 1-105 (334)
136 TIGR02201 heptsyl_trn_III lipo 94.3 2.6 5.7E-05 42.1 16.9 105 5-133 1-108 (344)
137 PRK10017 colanic acid biosynth 93.9 1.2 2.6E-05 45.9 13.6 85 379-473 323-409 (426)
138 PF06722 DUF1205: Protein of u 93.8 0.06 1.3E-06 42.7 3.0 52 297-348 28-84 (97)
139 PRK02261 methylaspartate mutas 93.6 1.6 3.6E-05 37.1 11.7 62 1-67 1-62 (137)
140 PF08660 Alg14: Oligosaccharid 92.9 0.73 1.6E-05 40.9 8.8 114 10-136 4-129 (170)
141 PF13439 Glyco_transf_4: Glyco 92.4 1.1 2.4E-05 39.1 9.7 102 13-140 11-113 (177)
142 PHA01630 putative group 1 glyc 92.3 8.5 0.00018 38.3 16.6 91 373-471 196-311 (331)
143 PF13524 Glyco_trans_1_2: Glyc 91.9 2.3 5E-05 33.1 9.9 59 392-463 9-68 (92)
144 PLN02939 transferase, transfer 91.6 9.1 0.0002 43.1 16.9 117 366-496 836-968 (977)
145 PF01975 SurE: Survival protei 90.8 0.56 1.2E-05 42.6 5.8 42 4-46 1-42 (196)
146 PRK14099 glycogen synthase; Pr 90.7 6.9 0.00015 41.2 14.8 41 1-41 1-47 (485)
147 TIGR03713 acc_sec_asp1 accesso 90.3 2.1 4.5E-05 45.4 10.4 76 367-459 409-490 (519)
148 PF10093 DUF2331: Uncharacteri 89.9 13 0.00028 37.3 14.7 29 13-41 10-39 (374)
149 cd02067 B12-binding B12 bindin 88.8 9.7 0.00021 31.3 11.5 107 5-133 1-107 (119)
150 COG0859 RfaF ADP-heptose:LPS h 88.7 23 0.0005 35.2 16.1 104 4-133 2-107 (334)
151 COG0496 SurE Predicted acid ph 85.0 4.9 0.00011 37.8 8.2 102 16-137 12-126 (252)
152 PF06258 Mito_fiss_Elm1: Mitoc 84.5 8.1 0.00017 38.0 9.9 165 250-435 97-281 (311)
153 TIGR00715 precor6x_red precorr 83.3 9.7 0.00021 36.3 9.6 91 5-135 2-99 (256)
154 PRK10916 ADP-heptose:LPS hepto 83.0 12 0.00027 37.3 11.0 102 5-133 2-106 (348)
155 PRK10422 lipopolysaccharide co 82.3 13 0.00027 37.4 10.7 108 1-133 1-113 (352)
156 TIGR00087 surE 5'/3'-nucleotid 81.9 9.6 0.00021 36.0 8.9 112 5-136 2-128 (244)
157 KOG0853 Glycosyltransferase [C 81.4 73 0.0016 33.3 20.4 62 397-466 381-442 (495)
158 COG4370 Uncharacterized protei 81.2 8.1 0.00018 37.1 8.0 63 400-467 325-389 (412)
159 cd01425 RPS2 Ribosomal protein 81.2 7.1 0.00015 35.4 7.7 119 17-141 42-163 (193)
160 smart00851 MGS MGS-like domain 80.7 14 0.00031 28.6 8.3 79 20-132 2-89 (90)
161 COG2185 Sbm Methylmalonyl-CoA 80.6 18 0.0004 30.8 9.2 110 1-133 10-120 (143)
162 PRK13933 stationary phase surv 79.3 25 0.00054 33.4 10.7 112 5-136 2-129 (253)
163 COG2894 MinD Septum formation 79.0 11 0.00024 34.6 7.8 37 4-40 2-40 (272)
164 TIGR02400 trehalose_OtsA alpha 78.0 9.7 0.00021 39.7 8.4 86 373-473 342-440 (456)
165 PRK13932 stationary phase surv 77.8 13 0.00027 35.4 8.3 114 3-136 5-133 (257)
166 PF02142 MGS: MGS-like domain 77.8 4.8 0.0001 31.7 4.8 83 20-132 2-94 (95)
167 PF02374 ArsA_ATPase: Anion-tr 77.4 6.2 0.00013 38.7 6.4 41 5-45 2-43 (305)
168 PRK08305 spoVFB dipicolinate s 77.0 4.4 9.5E-05 36.7 4.8 44 2-46 4-48 (196)
169 PRK13935 stationary phase surv 76.9 16 0.00034 34.7 8.6 112 5-136 2-128 (253)
170 cd02071 MM_CoA_mut_B12_BD meth 76.6 42 0.0009 27.7 11.1 107 5-133 1-107 (122)
171 COG0438 RfaG Glycosyltransfera 76.4 73 0.0016 30.5 18.0 87 367-465 257-350 (381)
172 cd02070 corrinoid_protein_B12- 76.3 26 0.00056 32.0 9.9 106 3-133 82-189 (201)
173 PRK05986 cob(I)alamin adenolsy 76.2 60 0.0013 29.3 12.4 101 2-118 21-126 (191)
174 PRK12342 hypothetical protein; 75.6 24 0.00051 33.6 9.5 94 21-137 41-145 (254)
175 PRK01175 phosphoribosylformylg 75.6 26 0.00056 33.5 9.9 60 1-71 1-60 (261)
176 PF02441 Flavoprotein: Flavopr 75.4 3.5 7.7E-05 34.6 3.6 45 4-49 1-45 (129)
177 PRK13934 stationary phase surv 75.3 26 0.00056 33.5 9.6 111 5-136 2-127 (266)
178 cd03788 GT1_TPS Trehalose-6-Ph 75.2 9.9 0.00021 39.8 7.7 72 372-458 346-428 (460)
179 TIGR02919 accessory Sec system 74.5 13 0.00029 38.4 8.2 86 367-464 328-419 (438)
180 PF05159 Capsule_synth: Capsul 74.4 16 0.00034 35.1 8.4 43 368-413 184-226 (269)
181 cd00561 CobA_CobO_BtuR ATP:cor 74.3 59 0.0013 28.4 11.6 98 5-118 4-106 (159)
182 PRK10964 ADP-heptose:LPS hepto 73.3 17 0.00036 35.9 8.5 46 4-49 1-48 (322)
183 PRK13931 stationary phase surv 73.2 26 0.00057 33.4 9.2 98 20-136 16-129 (261)
184 PLN03063 alpha,alpha-trehalose 73.1 28 0.0006 39.2 10.8 105 374-497 363-480 (797)
185 TIGR02370 pyl_corrinoid methyl 72.8 30 0.00065 31.4 9.3 106 3-132 84-190 (197)
186 PF02951 GSH-S_N: Prokaryotic 72.7 6.2 0.00013 32.6 4.2 38 4-41 1-41 (119)
187 PRK00346 surE 5'(3')-nucleotid 71.7 27 0.00058 33.1 8.9 110 5-136 2-124 (250)
188 PF04127 DFP: DNA / pantothena 70.9 6.8 0.00015 35.2 4.5 40 2-41 2-53 (185)
189 COG1703 ArgK Putative periplas 70.8 90 0.002 30.3 12.0 111 5-133 53-171 (323)
190 cd00550 ArsA_ATPase Oxyanion-t 70.0 31 0.00067 32.8 9.1 37 7-43 4-40 (254)
191 cd01423 MGS_CPS_I_III Methylgl 69.9 29 0.00063 28.3 7.8 85 16-133 11-106 (116)
192 PRK01077 cobyrinic acid a,c-di 69.5 56 0.0012 34.0 11.6 40 1-40 1-41 (451)
193 COG0003 ArsA Predicted ATPase 69.2 60 0.0013 32.0 11.0 42 4-45 2-44 (322)
194 COG0052 RpsB Ribosomal protein 68.0 29 0.00062 32.5 7.9 37 107-143 156-194 (252)
195 COG3660 Predicted nucleoside-d 67.8 1.1E+02 0.0025 29.0 15.8 71 330-410 189-270 (329)
196 PRK06849 hypothetical protein; 67.8 32 0.0007 35.0 9.3 38 1-42 1-39 (389)
197 PF12146 Hydrolase_4: Putative 67.7 13 0.00028 28.2 4.8 36 4-39 16-51 (79)
198 PRK05973 replicative DNA helic 67.0 47 0.001 31.2 9.4 44 6-49 67-110 (237)
199 cd01424 MGS_CPS_II Methylglyox 66.8 56 0.0012 26.3 8.9 84 15-133 10-100 (110)
200 PF04413 Glycos_transf_N: 3-De 66.7 13 0.00028 33.5 5.4 95 11-137 28-127 (186)
201 TIGR01007 eps_fam capsular exo 66.5 1E+02 0.0022 27.9 12.4 40 3-42 16-57 (204)
202 KOG2941 Beta-1,4-mannosyltrans 66.1 1.5E+02 0.0031 29.6 27.0 123 3-141 12-142 (444)
203 PHA02542 41 41 helicase; Provi 66.0 47 0.001 34.8 10.1 41 6-46 193-233 (473)
204 COG0552 FtsY Signal recognitio 65.9 37 0.00081 33.4 8.6 89 5-115 141-229 (340)
205 PF06506 PrpR_N: Propionate ca 65.8 51 0.0011 29.2 9.1 111 15-140 17-155 (176)
206 cd01974 Nitrogenase_MoFe_beta 65.5 58 0.0013 33.7 10.8 27 106-135 376-402 (435)
207 PF09314 DUF1972: Domain of un 65.1 66 0.0014 28.9 9.5 42 18-66 21-62 (185)
208 PRK14099 glycogen synthase; Pr 64.7 11 0.00024 39.7 5.3 117 366-496 349-480 (485)
209 PRK02797 4-alpha-L-fucosyltran 64.6 73 0.0016 31.1 10.2 131 311-453 146-290 (322)
210 PRK06179 short chain dehydroge 64.5 23 0.00049 33.7 7.1 37 1-40 1-37 (270)
211 PRK12311 rpsB 30S ribosomal pr 64.4 28 0.00061 34.3 7.6 38 106-143 151-190 (326)
212 PRK00090 bioD dithiobiotin syn 64.1 57 0.0012 30.0 9.5 33 6-38 2-35 (222)
213 TIGR02015 BchY chlorophyllide 63.1 57 0.0012 33.6 10.0 27 106-135 354-380 (422)
214 cd01980 Chlide_reductase_Y Chl 63.0 70 0.0015 32.9 10.7 27 106-135 349-375 (416)
215 cd01965 Nitrogenase_MoFe_beta_ 62.9 21 0.00046 36.9 7.0 27 106-135 370-396 (428)
216 COG1618 Predicted nucleotide k 62.7 34 0.00073 30.0 6.8 57 3-68 5-61 (179)
217 cd02069 methionine_synthase_B1 62.2 59 0.0013 30.0 9.0 45 3-47 88-132 (213)
218 TIGR00347 bioD dethiobiotin sy 62.2 69 0.0015 27.8 9.3 27 11-37 6-32 (166)
219 cd03793 GT1_Glycogen_synthase_ 61.8 57 0.0012 34.9 9.7 79 376-457 467-552 (590)
220 PF00448 SRP54: SRP54-type pro 61.6 51 0.0011 29.9 8.4 38 6-43 4-41 (196)
221 PF02310 B12-binding: B12 bind 61.2 25 0.00054 28.7 5.9 42 5-46 2-43 (121)
222 KOG0202 Ca2+ transporting ATPa 61.1 94 0.002 34.6 11.2 153 310-494 572-749 (972)
223 PRK05595 replicative DNA helic 61.0 44 0.00095 34.7 8.9 41 7-47 205-246 (444)
224 PRK08760 replicative DNA helic 60.8 35 0.00076 35.8 8.1 41 6-46 232-273 (476)
225 TIGR02195 heptsyl_trn_II lipop 60.1 1.3E+02 0.0029 29.6 12.0 85 18-136 194-278 (334)
226 PRK08506 replicative DNA helic 60.0 60 0.0013 34.1 9.7 42 6-47 195-236 (472)
227 PRK12475 thiamine/molybdopteri 59.9 37 0.0008 33.8 7.8 34 2-40 23-57 (338)
228 COG2910 Putative NADH-flavin r 59.9 11 0.00025 33.5 3.6 36 4-43 1-36 (211)
229 PRK09620 hypothetical protein; 59.9 22 0.00048 33.2 5.9 41 1-41 1-53 (229)
230 PRK14501 putative bifunctional 59.9 27 0.00059 38.9 7.5 111 371-497 346-465 (726)
231 PF02606 LpxK: Tetraacyldisacc 59.6 29 0.00063 34.4 6.9 35 8-42 42-76 (326)
232 PF04464 Glyphos_transf: CDP-G 59.5 26 0.00057 35.3 6.8 112 366-493 251-368 (369)
233 TIGR00708 cobA cob(I)alamin ad 59.5 1.3E+02 0.0028 26.7 10.8 97 5-118 7-108 (173)
234 cd01121 Sms Sms (bacterial rad 58.7 1.6E+02 0.0034 29.8 12.1 41 7-47 86-126 (372)
235 COG0541 Ffh Signal recognition 58.6 68 0.0015 32.8 9.1 46 4-49 101-146 (451)
236 CHL00067 rps2 ribosomal protei 58.5 39 0.00085 31.5 7.2 42 106-147 160-203 (230)
237 PRK10867 signal recognition pa 58.3 65 0.0014 33.3 9.4 41 6-46 103-144 (433)
238 PF02571 CbiJ: Precorrin-6x re 57.9 51 0.0011 31.3 7.9 94 4-135 1-100 (249)
239 TIGR03600 phage_DnaB phage rep 57.8 74 0.0016 32.8 9.9 42 6-47 197-239 (421)
240 cd00984 DnaB_C DnaB helicase C 57.7 88 0.0019 29.1 9.7 42 7-48 17-59 (242)
241 PRK03359 putative electron tra 56.8 78 0.0017 30.1 9.0 94 21-137 42-148 (256)
242 PRK06321 replicative DNA helic 56.4 78 0.0017 33.2 9.7 42 6-47 229-271 (472)
243 PRK08006 replicative DNA helic 56.1 66 0.0014 33.7 9.2 42 6-47 227-269 (471)
244 PF00731 AIRC: AIR carboxylase 56.0 1.4E+02 0.0029 25.9 11.0 137 311-473 2-148 (150)
245 PF01075 Glyco_transf_9: Glyco 55.7 41 0.00089 31.5 7.1 99 4-138 106-212 (247)
246 cd03466 Nitrogenase_NifN_2 Nit 55.7 98 0.0021 32.0 10.4 34 93-135 364-397 (429)
247 TIGR02852 spore_dpaB dipicolin 55.7 19 0.00041 32.4 4.4 41 4-44 1-41 (187)
248 PRK05632 phosphate acetyltrans 55.4 1.5E+02 0.0032 32.9 12.2 102 5-138 4-116 (684)
249 TIGR01425 SRP54_euk signal rec 55.3 50 0.0011 34.0 7.9 39 6-44 103-141 (429)
250 PF01210 NAD_Gly3P_dh_N: NAD-d 55.2 9.9 0.00021 33.1 2.5 32 5-41 1-32 (157)
251 PF06925 MGDG_synth: Monogalac 54.1 31 0.00066 30.4 5.6 44 88-137 76-125 (169)
252 PRK07313 phosphopantothenoylcy 54.0 18 0.0004 32.4 4.1 43 4-47 2-44 (182)
253 TIGR02655 circ_KaiC circadian 53.7 1.1E+02 0.0024 32.3 10.4 44 6-49 266-309 (484)
254 TIGR00064 ftsY signal recognit 53.6 83 0.0018 30.3 8.8 40 4-43 72-112 (272)
255 COG1484 DnaC DNA replication p 53.5 22 0.00048 33.8 4.8 46 3-48 105-150 (254)
256 PRK06029 3-octaprenyl-4-hydrox 53.1 22 0.00048 31.9 4.5 44 4-48 2-46 (185)
257 PRK06249 2-dehydropantoate 2-r 52.7 35 0.00076 33.5 6.3 42 1-48 3-44 (313)
258 TIGR01283 nifE nitrogenase mol 52.7 94 0.002 32.4 9.8 27 106-135 394-420 (456)
259 PRK09165 replicative DNA helic 52.6 75 0.0016 33.6 9.0 42 6-47 220-276 (497)
260 PRK13789 phosphoribosylamine-- 52.1 38 0.00082 35.0 6.6 38 1-43 1-39 (426)
261 PRK05920 aromatic acid decarbo 52.1 24 0.00053 32.2 4.6 45 3-48 3-47 (204)
262 PF07015 VirC1: VirC1 protein; 52.1 34 0.00074 31.8 5.6 41 6-46 4-45 (231)
263 PF01075 Glyco_transf_9: Glyco 51.8 25 0.00055 32.9 5.0 97 309-411 105-208 (247)
264 PF00551 Formyl_trans_N: Formy 51.7 1.6E+02 0.0034 26.2 9.8 107 4-137 1-110 (181)
265 COG1066 Sms Predicted ATP-depe 51.2 1.1E+02 0.0024 31.2 9.2 102 6-136 96-218 (456)
266 TIGR03029 EpsG chain length de 51.1 2.3E+02 0.0049 27.0 11.8 37 4-40 103-141 (274)
267 cd03114 ArgK-like The function 50.9 1.6E+02 0.0035 25.2 10.5 36 6-41 2-37 (148)
268 PRK13234 nifH nitrogenase redu 50.6 28 0.00061 33.9 5.1 42 1-42 1-43 (295)
269 PRK13886 conjugal transfer pro 50.3 2.2E+02 0.0049 26.8 11.8 43 1-43 1-43 (241)
270 PRK08057 cobalt-precorrin-6x r 50.3 67 0.0014 30.4 7.4 91 4-135 3-99 (248)
271 PRK14569 D-alanyl-alanine synt 49.9 32 0.0007 33.5 5.5 39 1-39 1-43 (296)
272 PRK11823 DNA repair protein Ra 49.9 2.2E+02 0.0047 29.7 11.8 42 6-47 83-124 (446)
273 PRK06719 precorrin-2 dehydroge 49.8 32 0.00069 30.0 4.8 36 2-42 12-47 (157)
274 TIGR00421 ubiX_pad polyprenyl 49.3 22 0.00047 31.9 3.8 41 6-47 2-42 (181)
275 PRK11889 flhF flagellar biosyn 48.9 3.2E+02 0.0069 28.1 13.5 40 4-43 242-281 (436)
276 COG2861 Uncharacterized protei 48.7 1.6E+02 0.0035 27.6 9.2 39 90-133 137-178 (250)
277 TIGR02329 propionate_PrpR prop 48.6 1.7E+02 0.0037 31.2 10.9 109 14-137 36-172 (526)
278 PRK05579 bifunctional phosphop 48.6 27 0.00058 35.7 4.7 47 1-48 4-50 (399)
279 cd01124 KaiC KaiC is a circadi 48.1 58 0.0012 28.8 6.5 43 6-48 2-44 (187)
280 TIGR00959 ffh signal recogniti 48.0 96 0.0021 32.0 8.7 41 6-46 102-143 (428)
281 PRK05993 short chain dehydroge 48.0 1.1E+02 0.0024 29.1 8.9 37 1-40 1-37 (277)
282 PRK05636 replicative DNA helic 47.8 87 0.0019 33.2 8.5 41 6-46 268-309 (505)
283 TIGR03371 cellulose_yhjQ cellu 47.5 2E+02 0.0044 26.6 10.5 37 6-42 4-41 (246)
284 TIGR03880 KaiC_arch_3 KaiC dom 47.4 93 0.002 28.7 8.0 44 6-49 19-62 (224)
285 cd01018 ZntC Metal binding pro 47.4 2.6E+02 0.0056 26.7 11.2 45 92-139 205-251 (266)
286 KOG1111 N-acetylglucosaminyltr 47.2 2.2E+02 0.0047 28.5 10.3 82 322-410 208-300 (426)
287 TIGR01011 rpsB_bact ribosomal 47.0 85 0.0018 29.2 7.4 36 106-141 154-191 (225)
288 COG0801 FolK 7,8-dihydro-6-hyd 47.0 39 0.00085 29.5 4.8 35 311-345 3-37 (160)
289 PF13419 HAD_2: Haloacid dehal 46.9 1.5E+02 0.0033 25.3 9.0 92 20-134 82-176 (176)
290 TIGR02699 archaeo_AfpA archaeo 46.8 29 0.00063 30.8 4.1 42 5-47 1-44 (174)
291 PRK05647 purN phosphoribosylgl 46.7 2E+02 0.0044 26.1 9.8 34 4-40 2-37 (200)
292 PRK07773 replicative DNA helic 46.5 1.1E+02 0.0024 35.0 9.7 42 6-47 220-262 (886)
293 cd03115 SRP The signal recogni 46.4 1.6E+02 0.0035 25.6 9.1 39 6-44 3-41 (173)
294 PRK14478 nitrogenase molybdenu 46.2 1.5E+02 0.0033 31.1 10.0 25 106-133 392-416 (475)
295 PRK00784 cobyric acid synthase 45.9 2.5E+02 0.0055 29.6 11.7 35 5-39 4-39 (488)
296 TIGR00521 coaBC_dfp phosphopan 45.8 30 0.00065 35.2 4.6 47 1-48 1-47 (390)
297 TIGR02113 coaC_strep phosphopa 45.7 25 0.00054 31.4 3.6 42 5-47 2-43 (177)
298 TIGR01285 nifN nitrogenase mol 45.5 1.7E+02 0.0036 30.3 10.1 87 4-135 312-398 (432)
299 cd01968 Nitrogenase_NifE_I Nit 45.2 1.3E+02 0.0029 30.8 9.4 26 106-134 355-380 (410)
300 PRK00911 dihydroxy-acid dehydr 45.2 1E+02 0.0022 32.7 8.4 34 106-139 108-145 (552)
301 TIGR01829 AcAcCoA_reduct aceto 44.8 97 0.0021 28.5 7.8 31 6-39 2-32 (242)
302 PRK08862 short chain dehydroge 44.6 1.1E+02 0.0024 28.3 8.0 33 4-39 5-37 (227)
303 PRK11519 tyrosine kinase; Prov 44.6 4.9E+02 0.011 29.0 14.3 117 3-135 525-667 (719)
304 PRK07688 thiamine/molybdopteri 44.4 89 0.0019 31.2 7.6 34 2-40 23-57 (339)
305 PF07429 Glyco_transf_56: 4-al 44.3 3.4E+02 0.0073 27.1 12.2 82 367-456 245-332 (360)
306 PRK06988 putative formyltransf 44.1 1.8E+02 0.004 28.5 9.7 34 3-41 2-35 (312)
307 PRK07952 DNA replication prote 44.1 79 0.0017 29.9 6.9 36 6-41 102-137 (244)
308 PRK10416 signal recognition pa 43.8 1.3E+02 0.0029 29.6 8.7 39 5-43 116-154 (318)
309 PRK10964 ADP-heptose:LPS hepto 43.6 65 0.0014 31.7 6.6 133 310-456 179-321 (322)
310 cd03789 GT1_LPS_heptosyltransf 43.5 88 0.0019 29.9 7.4 87 18-137 140-226 (279)
311 cd02037 MRP-like MRP (Multiple 43.4 96 0.0021 27.1 7.1 34 10-43 7-40 (169)
312 PRK12377 putative replication 43.4 94 0.002 29.4 7.3 37 5-41 103-139 (248)
313 PRK07004 replicative DNA helic 43.2 1.3E+02 0.0028 31.5 8.9 42 6-47 216-258 (460)
314 PF01297 TroA: Periplasmic sol 43.2 91 0.002 29.5 7.3 80 32-137 150-231 (256)
315 PRK08840 replicative DNA helic 43.1 1.4E+02 0.0031 31.1 9.2 42 6-47 220-262 (464)
316 PRK14974 cell division protein 42.9 2.3E+02 0.0049 28.3 10.1 39 5-43 142-180 (336)
317 cd01017 AdcA Metal binding pro 42.6 2E+02 0.0043 27.7 9.7 42 92-136 208-251 (282)
318 PF06506 PrpR_N: Propionate ca 42.6 28 0.0006 31.0 3.4 33 382-415 31-63 (176)
319 TIGR00665 DnaB replicative DNA 42.3 1.5E+02 0.0032 30.7 9.3 42 6-47 198-240 (434)
320 PRK13982 bifunctional SbtC-lik 42.2 34 0.00074 35.7 4.4 40 3-42 256-307 (475)
321 KOG1250 Threonine/serine dehyd 42.2 86 0.0019 31.6 6.8 61 388-459 247-318 (457)
322 PRK07206 hypothetical protein; 42.2 1.1E+02 0.0025 31.2 8.4 33 4-41 3-35 (416)
323 PF01012 ETF: Electron transfe 42.2 1E+02 0.0022 26.8 7.0 97 18-136 18-122 (164)
324 COG2874 FlaH Predicted ATPases 42.1 1.5E+02 0.0032 27.4 7.8 36 7-42 32-67 (235)
325 COG0859 RfaF ADP-heptose:LPS h 41.9 93 0.002 30.9 7.4 99 4-137 176-279 (334)
326 TIGR02700 flavo_MJ0208 archaeo 41.9 38 0.00081 31.8 4.3 42 6-47 2-45 (234)
327 TIGR03499 FlhF flagellar biosy 41.8 1.9E+02 0.0041 27.9 9.3 38 6-43 197-236 (282)
328 COG3640 CooC CO dehydrogenase 41.7 3E+02 0.0066 25.8 10.0 46 4-49 1-47 (255)
329 cd00532 MGS-like MGS-like doma 41.5 1.9E+02 0.0041 23.3 8.4 85 16-133 10-104 (112)
330 PRK08939 primosomal protein Dn 41.2 86 0.0019 30.8 6.9 42 5-46 158-199 (306)
331 TIGR02201 heptsyl_trn_III lipo 41.1 2.8E+02 0.006 27.4 10.8 85 18-136 200-287 (344)
332 PRK06904 replicative DNA helic 41.1 1.4E+02 0.0031 31.3 8.9 42 6-47 224-266 (472)
333 TIGR02398 gluc_glyc_Psyn gluco 41.0 4.6E+02 0.0099 27.7 14.8 90 370-473 365-466 (487)
334 COG1435 Tdk Thymidine kinase [ 41.0 2.5E+02 0.0054 25.5 9.0 41 2-42 2-43 (201)
335 TIGR00682 lpxK tetraacyldisacc 40.4 93 0.002 30.6 6.9 34 9-42 36-69 (311)
336 PRK10422 lipopolysaccharide co 40.1 1.2E+02 0.0026 30.3 7.9 97 309-411 183-287 (352)
337 TIGR01286 nifK nitrogenase mol 40.1 2.2E+02 0.0048 30.3 10.1 27 106-135 436-462 (515)
338 PRK09841 cryptic autophosphory 40.0 3.2E+02 0.007 30.5 11.9 40 3-42 530-571 (726)
339 PRK05299 rpsB 30S ribosomal pr 39.7 1.2E+02 0.0027 28.8 7.4 38 106-143 156-195 (258)
340 PF08323 Glyco_transf_5: Starc 39.6 24 0.00053 33.3 2.7 24 18-41 20-43 (245)
341 TIGR03878 thermo_KaiC_2 KaiC d 39.6 3E+02 0.0065 26.1 10.2 38 6-43 39-76 (259)
342 cd07025 Peptidase_S66 LD-Carbo 39.5 65 0.0014 31.1 5.7 76 320-414 44-121 (282)
343 TIGR00416 sms DNA repair prote 39.1 3.2E+02 0.0069 28.6 11.0 42 6-47 97-138 (454)
344 PRK06526 transposase; Provisio 39.1 58 0.0013 30.9 5.2 36 4-39 99-134 (254)
345 PRK05748 replicative DNA helic 39.1 1.9E+02 0.004 30.2 9.4 42 6-47 206-248 (448)
346 TIGR00110 ilvD dihydroxy-acid 39.0 1.6E+02 0.0035 31.2 8.6 35 106-140 88-126 (535)
347 PLN02470 acetolactate synthase 38.8 1.6E+02 0.0035 31.9 9.2 29 384-412 75-109 (585)
348 cd01421 IMPCH Inosine monophos 38.8 1.6E+02 0.0034 26.5 7.4 39 17-66 10-48 (187)
349 PRK10916 ADP-heptose:LPS hepto 38.6 1E+02 0.0022 30.8 7.1 96 308-411 179-286 (348)
350 cd01985 ETF The electron trans 38.4 2.5E+02 0.0055 24.8 9.1 30 106-135 90-122 (181)
351 PRK08116 hypothetical protein; 38.1 3.3E+02 0.0072 26.0 10.3 36 6-41 117-152 (268)
352 PRK12825 fabG 3-ketoacyl-(acyl 38.0 1.8E+02 0.0039 26.7 8.5 34 4-41 7-40 (249)
353 PRK08181 transposase; Validate 37.9 88 0.0019 30.0 6.2 35 5-39 108-142 (269)
354 PRK02155 ppnK NAD(+)/NADH kina 37.8 1.7E+02 0.0037 28.4 8.3 52 386-457 64-119 (291)
355 CHL00175 minD septum-site dete 37.8 3.1E+02 0.0066 26.2 10.2 38 4-41 15-54 (281)
356 PRK10818 cell division inhibit 37.6 3.2E+02 0.007 25.8 10.3 32 10-41 10-41 (270)
357 PF10649 DUF2478: Protein of u 37.5 2E+02 0.0044 25.1 7.8 109 10-138 5-133 (159)
358 PRK06182 short chain dehydroge 37.1 2E+02 0.0043 27.2 8.8 36 1-40 1-36 (273)
359 PRK12743 oxidoreductase; Provi 37.0 1.6E+02 0.0034 27.6 7.9 31 6-39 4-34 (256)
360 cd06318 PBP1_ABC_sugar_binding 36.6 3E+02 0.0065 25.8 10.0 31 106-136 54-88 (282)
361 COG1797 CobB Cobyrinic acid a, 36.4 37 0.00079 34.7 3.4 32 6-37 3-35 (451)
362 TIGR01509 HAD-SF-IA-v3 haloaci 36.3 2.5E+02 0.0054 24.3 8.8 24 20-43 90-113 (183)
363 COG0129 IlvD Dihydroxyacid deh 36.3 1.2E+02 0.0026 32.3 7.2 34 106-139 119-156 (575)
364 TIGR00460 fmt methionyl-tRNA f 35.9 2.5E+02 0.0053 27.6 9.2 32 4-40 1-32 (313)
365 PRK11064 wecC UDP-N-acetyl-D-m 35.6 51 0.0011 33.9 4.5 35 1-40 1-35 (415)
366 PRK13982 bifunctional SbtC-lik 35.3 57 0.0012 34.1 4.7 45 3-48 70-114 (475)
367 TIGR01990 bPGM beta-phosphoglu 35.2 2.8E+02 0.006 24.2 8.9 22 21-42 93-114 (185)
368 PF00282 Pyridoxal_deC: Pyrido 35.0 70 0.0015 32.4 5.3 71 385-457 103-191 (373)
369 TIGR00379 cobB cobyrinic acid 34.6 3.5E+02 0.0076 28.2 10.5 106 6-138 2-120 (449)
370 KOG0832 Mitochondrial/chloropl 34.6 48 0.001 30.5 3.5 121 13-149 90-217 (251)
371 PF07991 IlvN: Acetohydroxy ac 34.5 71 0.0015 28.0 4.4 53 2-66 3-55 (165)
372 COG0503 Apt Adenine/guanine ph 34.0 1.5E+02 0.0033 26.4 6.7 38 95-135 44-83 (179)
373 cd01977 Nitrogenase_VFe_alpha 33.7 2.4E+02 0.0052 29.0 9.1 26 106-134 357-382 (415)
374 TIGR01862 N2-ase-Ialpha nitrog 33.5 2.5E+02 0.0054 29.2 9.2 26 106-134 386-411 (443)
375 PF07355 GRDB: Glycine/sarcosi 33.4 77 0.0017 31.4 5.0 40 93-135 69-118 (349)
376 TIGR01005 eps_transp_fam exopo 33.4 4.4E+02 0.0095 29.6 11.8 39 4-42 546-586 (754)
377 PRK04328 hypothetical protein; 33.4 4.1E+02 0.0089 25.0 10.0 44 5-48 25-68 (249)
378 PRK06732 phosphopantothenate-- 33.4 86 0.0019 29.2 5.3 21 20-40 29-49 (229)
379 PRK05234 mgsA methylglyoxal sy 33.4 3.1E+02 0.0066 23.4 9.9 97 5-136 6-114 (142)
380 PRK01231 ppnK inorganic polyph 33.3 1.8E+02 0.004 28.3 7.7 52 386-457 63-118 (295)
381 PF02585 PIG-L: GlcNAc-PI de-N 33.3 1.6E+02 0.0035 24.2 6.5 22 19-40 13-34 (128)
382 PF05225 HTH_psq: helix-turn-h 33.1 60 0.0013 21.5 3.0 25 443-467 1-26 (45)
383 PRK08177 short chain dehydroge 33.0 2.6E+02 0.0056 25.5 8.6 33 6-41 3-35 (225)
384 TIGR00725 conserved hypothetic 32.9 1.7E+02 0.0037 25.5 6.8 39 376-414 83-124 (159)
385 cd07038 TPP_PYR_PDC_IPDC_like 32.9 1.5E+02 0.0033 25.8 6.5 28 386-413 60-93 (162)
386 COG0287 TyrA Prephenate dehydr 32.8 4.3E+02 0.0094 25.5 10.1 43 2-49 2-44 (279)
387 PRK06718 precorrin-2 dehydroge 32.7 91 0.002 28.4 5.2 42 1-47 8-49 (202)
388 PRK14098 glycogen synthase; Pr 32.4 66 0.0014 34.0 4.8 38 4-41 6-49 (489)
389 cd08551 Fe-ADH iron-containing 32.3 3.8E+02 0.0082 26.9 10.2 96 20-139 11-133 (370)
390 PRK11199 tyrA bifunctional cho 32.3 3.9E+02 0.0085 27.0 10.2 32 4-40 99-131 (374)
391 PF06564 YhjQ: YhjQ protein; 32.2 4.4E+02 0.0095 24.9 10.6 36 5-40 3-39 (243)
392 PRK06079 enoyl-(acyl carrier p 32.1 3.2E+02 0.0069 25.5 9.2 34 4-39 7-41 (252)
393 KOG0780 Signal recognition par 32.1 1.3E+02 0.0028 30.4 6.2 43 6-48 104-146 (483)
394 TIGR01501 MthylAspMutase methy 32.0 3.1E+02 0.0068 23.1 10.8 60 3-67 1-60 (134)
395 COG3245 CycB Cytochrome c5 [En 31.8 34 0.00074 27.8 1.9 52 402-455 60-122 (126)
396 cd06305 PBP1_methylthioribose_ 31.8 4.1E+02 0.0089 24.7 10.0 31 106-136 54-88 (273)
397 PRK12448 dihydroxy-acid dehydr 31.8 1.9E+02 0.0041 31.1 7.9 35 106-140 110-148 (615)
398 cd07039 TPP_PYR_POX Pyrimidine 31.7 1.9E+02 0.0041 25.3 6.9 27 386-412 64-96 (164)
399 TIGR02193 heptsyl_trn_I lipopo 31.6 1E+02 0.0023 30.1 5.9 97 4-136 180-281 (319)
400 TIGR00750 lao LAO/AO transport 31.6 4.1E+02 0.0088 25.9 9.9 39 5-43 36-74 (300)
401 TIGR00345 arsA arsenite-activa 31.4 1E+02 0.0022 29.8 5.7 24 21-44 3-26 (284)
402 PRK08533 flagellar accessory p 31.2 4.3E+02 0.0094 24.5 9.7 41 5-45 26-66 (230)
403 PRK13768 GTPase; Provisional 31.2 82 0.0018 29.9 4.8 37 5-41 4-40 (253)
404 PRK09444 pntB pyridine nucleot 31.1 81 0.0017 32.5 4.8 39 3-41 306-347 (462)
405 cd01540 PBP1_arabinose_binding 30.9 3.9E+02 0.0083 25.2 9.7 30 106-135 53-86 (289)
406 PRK08229 2-dehydropantoate 2-r 30.8 62 0.0013 32.1 4.2 33 4-41 3-35 (341)
407 PRK06914 short chain dehydroge 30.8 3.4E+02 0.0074 25.6 9.3 36 1-40 1-36 (280)
408 COG4088 Predicted nucleotide k 30.5 56 0.0012 29.9 3.3 35 6-40 4-38 (261)
409 PRK08293 3-hydroxybutyryl-CoA 30.5 65 0.0014 31.2 4.1 35 1-40 1-35 (287)
410 PRK08589 short chain dehydroge 30.5 2.5E+02 0.0055 26.5 8.3 34 4-40 6-39 (272)
411 cd02065 B12-binding_like B12 b 30.4 1.2E+02 0.0026 24.7 5.2 41 6-46 2-42 (125)
412 PRK04885 ppnK inorganic polyph 30.4 1E+02 0.0022 29.5 5.3 52 386-457 36-93 (265)
413 cd01141 TroA_d Periplasmic bin 30.3 79 0.0017 28.0 4.4 30 106-135 68-99 (186)
414 COG0059 IlvC Ketol-acid reduct 30.3 1E+02 0.0022 30.0 5.1 56 3-70 18-73 (338)
415 PRK08309 short chain dehydroge 30.2 3.9E+02 0.0084 23.7 10.5 20 21-40 13-32 (177)
416 cd01019 ZnuA Zinc binding prot 30.2 3.5E+02 0.0076 26.1 9.2 43 92-137 216-260 (286)
417 PRK06935 2-deoxy-D-gluconate 3 30.2 3.1E+02 0.0068 25.5 8.8 33 5-40 16-48 (258)
418 PRK07710 acetolactate synthase 30.1 2.2E+02 0.0048 30.7 8.5 28 385-412 78-111 (571)
419 PRK13604 luxD acyl transferase 30.0 97 0.0021 30.3 5.1 35 4-38 37-71 (307)
420 cd01840 SGNH_hydrolase_yrhL_li 30.0 1.4E+02 0.0031 25.4 5.8 36 309-345 51-86 (150)
421 COG2210 Peroxiredoxin family p 30.0 1.1E+02 0.0024 25.8 4.7 40 8-47 8-47 (137)
422 PF00318 Ribosomal_S2: Ribosom 30.0 87 0.0019 28.8 4.6 119 17-141 42-179 (211)
423 PRK06522 2-dehydropantoate 2-r 30.0 77 0.0017 30.7 4.6 31 5-40 2-32 (304)
424 PF02572 CobA_CobO_BtuR: ATP:c 29.7 3.4E+02 0.0075 24.0 8.1 98 5-118 5-107 (172)
425 COG1029 FwdB Formylmethanofura 29.7 2.7E+02 0.0059 27.8 7.9 37 106-142 333-373 (429)
426 PLN00016 RNA-binding protein; 29.7 60 0.0013 32.8 3.9 38 4-41 53-90 (378)
427 PRK10490 sensor protein KdpD; 29.7 2.3E+02 0.0049 32.6 8.8 38 3-40 24-61 (895)
428 PF00070 Pyr_redox: Pyridine n 29.7 80 0.0017 23.5 3.7 24 18-41 9-32 (80)
429 COG1448 TyrB Aspartate/tyrosin 29.6 6.1E+02 0.013 25.7 10.6 79 384-477 253-331 (396)
430 PRK12481 2-deoxy-D-gluconate 3 29.6 3.2E+02 0.007 25.4 8.7 32 5-39 9-40 (251)
431 cd07062 Peptidase_S66_mccF_lik 29.5 1.1E+02 0.0024 30.0 5.6 74 321-413 49-124 (308)
432 cd01715 ETF_alpha The electron 29.4 3.8E+02 0.0083 23.3 9.9 31 106-136 82-115 (168)
433 TIGR01012 Sa_S2_E_A ribosomal 29.1 39 0.00084 30.7 2.1 36 106-141 107-144 (196)
434 PF04244 DPRP: Deoxyribodipyri 29.1 65 0.0014 29.9 3.6 26 16-41 47-72 (224)
435 cd02034 CooC The accessory pro 29.0 1.2E+02 0.0026 24.8 4.9 37 5-41 1-37 (116)
436 PRK14477 bifunctional nitrogen 28.7 2.4E+02 0.0053 32.4 8.8 27 106-135 388-414 (917)
437 PRK06180 short chain dehydroge 28.7 1E+02 0.0022 29.4 5.1 37 1-40 1-37 (277)
438 PLN02948 phosphoribosylaminoim 28.6 4.2E+02 0.0091 28.7 10.2 144 309-477 410-562 (577)
439 PRK05854 short chain dehydroge 28.6 3.2E+02 0.007 26.6 8.8 33 5-40 15-47 (313)
440 PTZ00318 NADH dehydrogenase-li 28.5 63 0.0014 33.3 3.9 37 1-42 8-44 (424)
441 PRK12744 short chain dehydroge 28.5 2.6E+02 0.0057 26.0 7.9 32 5-39 9-40 (257)
442 PRK12921 2-dehydropantoate 2-r 28.4 1E+02 0.0023 29.8 5.2 37 5-46 2-38 (305)
443 PF13450 NAD_binding_8: NAD(P) 28.4 70 0.0015 23.2 3.0 22 20-41 8-29 (68)
444 TIGR02247 HAD-1A3-hyp Epoxide 28.3 3E+02 0.0064 24.8 8.0 29 108-137 170-198 (211)
445 COG1748 LYS9 Saccharopine dehy 28.2 3E+02 0.0066 28.0 8.4 40 4-48 2-43 (389)
446 PF00148 Oxidored_nitro: Nitro 28.1 6.4E+02 0.014 25.5 11.3 91 4-135 272-366 (398)
447 COG2109 BtuR ATP:corrinoid ade 28.1 4.5E+02 0.0098 23.8 10.7 98 6-118 31-133 (198)
448 TIGR00355 purH phosphoribosyla 28.1 2.2E+02 0.0047 30.0 7.4 39 17-66 10-48 (511)
449 TIGR01832 kduD 2-deoxy-D-gluco 28.1 3.7E+02 0.0079 24.8 8.8 33 5-40 6-38 (248)
450 PRK09545 znuA high-affinity zi 28.1 3.7E+02 0.0081 26.3 9.0 42 92-136 240-283 (311)
451 PRK04020 rps2P 30S ribosomal p 28.0 41 0.00089 30.7 2.1 36 106-141 113-150 (204)
452 cd01452 VWA_26S_proteasome_sub 27.8 2.9E+02 0.0064 24.8 7.5 63 5-68 109-175 (187)
453 PF13460 NAD_binding_10: NADH( 27.8 62 0.0014 28.4 3.3 43 12-66 5-47 (183)
454 PRK01966 ddl D-alanyl-alanine 27.7 94 0.002 30.8 4.8 42 1-42 1-46 (333)
455 PRK01372 ddl D-alanine--D-alan 27.6 1E+02 0.0022 30.0 5.0 41 1-41 2-46 (304)
456 TIGR00853 pts-lac PTS system, 27.6 1.6E+02 0.0035 23.1 5.1 40 1-40 1-40 (95)
457 PRK09219 xanthine phosphoribos 27.6 1.3E+02 0.0029 27.1 5.3 30 106-135 49-80 (189)
458 PF03808 Glyco_tran_WecB: Glyc 27.3 4.3E+02 0.0093 23.2 10.8 98 20-142 37-139 (172)
459 COG2084 MmsB 3-hydroxyisobutyr 27.3 85 0.0018 30.4 4.2 34 4-42 1-34 (286)
460 cd01075 NAD_bind_Leu_Phe_Val_D 27.1 93 0.002 28.3 4.3 31 2-37 27-57 (200)
461 COG2099 CobK Precorrin-6x redu 26.9 3.5E+02 0.0075 25.6 7.9 80 20-135 14-100 (257)
462 PRK06067 flagellar accessory p 26.9 2.2E+02 0.0048 26.3 7.0 41 6-46 28-68 (234)
463 KOG1509 Predicted nucleic acid 26.8 1.8E+02 0.0039 26.3 5.6 77 29-113 7-83 (209)
464 PF02558 ApbA: Ketopantoate re 26.8 89 0.0019 26.5 4.0 29 21-49 11-39 (151)
465 PRK06128 oxidoreductase; Provi 26.8 2.9E+02 0.0063 26.6 8.1 33 5-40 56-88 (300)
466 PF14626 RNase_Zc3h12a_2: Zc3h 26.8 59 0.0013 26.6 2.5 31 17-47 9-39 (122)
467 TIGR01196 edd 6-phosphoglucona 26.6 4.5E+02 0.0098 28.3 9.5 35 106-140 142-181 (601)
468 COG0041 PurE Phosphoribosylcar 26.5 4.3E+02 0.0093 22.9 12.4 138 311-477 4-154 (162)
469 TIGR01281 DPOR_bchL light-inde 26.4 1.1E+02 0.0023 29.2 4.8 37 5-41 2-38 (268)
470 TIGR01428 HAD_type_II 2-haloal 26.4 4.6E+02 0.01 23.2 9.8 96 21-136 98-193 (198)
471 PRK06395 phosphoribosylamine-- 26.2 4.4E+02 0.0095 27.3 9.5 33 3-40 2-34 (435)
472 CHL00072 chlL photochlorophyll 26.1 1.2E+02 0.0025 29.5 5.0 38 5-42 2-39 (290)
473 cd01422 MGS Methylglyoxal synt 26.0 3.6E+02 0.0078 21.9 9.9 88 13-134 7-107 (115)
474 PRK09739 hypothetical protein; 26.0 1.6E+02 0.0034 26.6 5.6 39 1-39 1-42 (199)
475 TIGR02990 ectoine_eutA ectoine 25.9 3.6E+02 0.0078 25.3 8.0 106 17-140 105-218 (239)
476 PRK05693 short chain dehydroge 25.8 3.5E+02 0.0075 25.5 8.3 33 5-40 2-34 (274)
477 PF03446 NAD_binding_2: NAD bi 25.8 82 0.0018 27.4 3.6 31 4-39 2-32 (163)
478 PRK05579 bifunctional phosphop 25.7 1.3E+02 0.0029 30.7 5.5 23 19-41 216-238 (399)
479 TIGR01689 EcbF-BcbF capsule bi 25.6 2.1E+02 0.0046 23.8 5.7 25 19-43 28-52 (126)
480 PRK14568 vanB D-alanine--D-lac 25.4 1E+02 0.0023 30.7 4.7 41 1-41 1-45 (343)
481 PRK13896 cobyrinic acid a,c-di 25.4 7.8E+02 0.017 25.5 11.0 36 5-40 3-39 (433)
482 cd02032 Bchl_like This family 25.2 1.1E+02 0.0024 29.1 4.7 36 5-40 2-37 (267)
483 PRK08674 bifunctional phosphog 25.0 6E+02 0.013 25.1 10.0 56 7-70 81-136 (337)
484 PRK12446 undecaprenyldiphospho 25.0 3.2E+02 0.007 27.3 8.1 31 380-410 86-119 (352)
485 COG2179 Predicted hydrolase of 24.9 1.4E+02 0.0031 26.2 4.6 44 89-135 47-91 (175)
486 PF02780 Transketolase_C: Tran 24.9 1.2E+02 0.0027 24.8 4.3 36 3-40 9-44 (124)
487 PRK03708 ppnK inorganic polyph 24.8 1.2E+02 0.0025 29.3 4.7 53 385-457 57-112 (277)
488 PRK00005 fmt methionyl-tRNA fo 24.8 6E+02 0.013 24.8 9.8 32 4-40 1-32 (309)
489 cd01983 Fer4_NifH The Fer4_Nif 24.6 1.6E+02 0.0035 22.1 4.8 33 6-38 2-34 (99)
490 PRK07985 oxidoreductase; Provi 24.5 3.3E+02 0.0072 26.2 8.0 32 5-39 50-81 (294)
491 TIGR03837 efp_adjacent_2 conse 24.4 92 0.002 31.2 3.9 30 12-41 9-39 (371)
492 PRK12726 flagellar biosynthesi 24.4 7.8E+02 0.017 25.2 13.5 41 4-44 206-247 (407)
493 TIGR01918 various_sel_PB selen 24.4 1.4E+02 0.003 30.5 5.1 47 388-436 347-395 (431)
494 TIGR01917 gly_red_sel_B glycin 24.4 1.4E+02 0.003 30.5 5.1 40 93-135 65-114 (431)
495 PRK06484 short chain dehydroge 24.3 4.2E+02 0.0092 27.9 9.4 34 3-39 4-37 (520)
496 cd06320 PBP1_allose_binding Pe 24.3 5.8E+02 0.013 23.7 9.8 30 106-135 56-89 (275)
497 PTZ00445 p36-lilke protein; Pr 24.3 5.7E+02 0.012 23.6 8.5 113 15-136 74-206 (219)
498 PF02233 PNTB: NAD(P) transhyd 24.1 1.1E+02 0.0023 31.8 4.4 39 3-41 307-348 (463)
499 COG3426 Butyrate kinase [Energ 24.0 80 0.0017 30.2 3.2 19 119-137 113-131 (358)
500 cd08176 LPO Lactadehyde:propan 24.0 7.2E+02 0.016 25.1 10.5 22 20-41 16-38 (377)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=7e-66 Score=526.80 Aligned_cols=432 Identities=32% Similarity=0.656 Sum_probs=337.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (524)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+... ...+++++.+|++.+... ..++..++
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~~-~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDDP-PRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCCc-cccHHHHH
Confidence 4699999999999999999999999999999999999988766654321 113699999998775431 22344555
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCCCCC
Q 009851 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGM 162 (524)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (524)
..+...+.+.++++++.+... .+++|||+|.+.+|+..+|+++|||++.|+++++..+..+.+.+.....+.....
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~-- 156 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET-- 156 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc--
Confidence 555556888899999886431 2458999999999999999999999999999988877776665443222211000
Q ss_pred CccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHHHHH
Q 009851 163 IPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLE 242 (524)
Q Consensus 163 ~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (524)
+.+........+|+++.+...+++ .++..........+.+.
T Consensus 157 --------------------------------------~~~~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~ 197 (448)
T PLN02562 157 --------------------------------------GCPRQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWT 197 (448)
T ss_pred --------------------------------------cccccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHH
Confidence 000000112246777777777777 43322221223345555
Q ss_pred HHHHhcccccEEEEcCCccccccccc---------CCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEE
Q 009851 243 RNTRAMIAVNFHFCNSTYELESEAFT---------TFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVY 313 (524)
Q Consensus 243 ~~~~~~~~~~~~l~ns~~~le~~~~~---------~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~ 313 (524)
+..+...+++.+++||+.+||+.... ..|+++.|||++............++.+.+|.+||+.++++++||
T Consensus 198 ~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvy 277 (448)
T PLN02562 198 RTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIY 277 (448)
T ss_pred HHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEE
Confidence 55666778899999999999985222 357899999998654211000111345667889999998889999
Q ss_pred EeecCCC-CCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEec
Q 009851 314 VSFGSFT-ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSH 392 (524)
Q Consensus 314 vs~GS~~-~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ItH 392 (524)
|||||+. ..+.+++++++.+++.++.+|||+++.+. ...+|+++.++.++|+++++|+||.+||+|++|++||||
T Consensus 278 vsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH 353 (448)
T PLN02562 278 ISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTH 353 (448)
T ss_pred EEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEec
Confidence 9999985 67899999999999999999999997541 235888999999999999999999999999999999999
Q ss_pred CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 009851 393 CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAM 472 (524)
Q Consensus 393 gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~ 472 (524)
|||||++||+++|||||++|+++||+.||+++++.+|+|+.+. .+++++|.++|+++|.|++||+||++++++++
T Consensus 354 ~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~ 428 (448)
T PLN02562 354 CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDSGMGERLMKLRERAM 428 (448)
T ss_pred CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976569998873 47999999999999999999999999999998
Q ss_pred hhhhcCCCcHHHHHHHHHHH
Q 009851 473 SSVREGGSSYKTFQNFLQWT 492 (524)
Q Consensus 473 ~~~~~~g~~~~~~~~~~~~i 492 (524)
++ .+||||+++++++++.+
T Consensus 429 ~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 429 GE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred hc-CCCCCHHHHHHHHHHHh
Confidence 87 56799999999999876
No 2
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.8e-65 Score=517.73 Aligned_cols=444 Identities=22% Similarity=0.427 Sum_probs=333.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcCh-hhHHHhhhcCCCCCCCeEEEecCCCCCCC--CCc
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPW--EDR 75 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~ 75 (524)
|+++||+++|++++||++|++.||+.|+.+| ..|||++++.+. ..+.....+.....++++|+.+|++.... ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8899999999999999999999999999998 999999998765 32322211111111369999999644211 112
Q ss_pred ccHHHHHHHHHHhccH----HHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccc
Q 009851 76 NDLGKLIEKCLQVMPG----KLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (524)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 151 (524)
.+....+..+...+.+ .+.++++....+. .+++|||+|.+++|+..+|+++|||++.|+++++..+..+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 2344444444445544 3444444322111 2349999999999999999999999999999999888877665432
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCC-CCCCcccccccccCC
Q 009851 152 IDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKM-PEMNSRDCFWAHIGD 230 (524)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~~~~~~~ 230 (524)
+.... ..+ .+... ....+||+ +++...+++ .++..
T Consensus 160 ~~~~~-------------~~~-----------------------------~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~ 195 (468)
T PLN02207 160 HSKDT-------------SVF-----------------------------VRNSE-EMLSIPGFVNPVPANVLP-SALFV 195 (468)
T ss_pred ccccc-------------ccC-----------------------------cCCCC-CeEECCCCCCCCChHHCc-chhcC
Confidence 11100 000 00001 11246887 578888888 44322
Q ss_pred CchhhHHHHHHHHHHHhcccccEEEEcCCccccccc------ccCCCcccccccccccCCCCCCCCCCccCcchhhHhhh
Q 009851 231 WTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEA------FTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLD 304 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~------~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~ 304 (524)
... ...+.+....+.+++.+|+||+++||++. .+..|+++.|||++.......+ ......+++|.+||+
T Consensus 196 ~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd 270 (468)
T PLN02207 196 EDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLD 270 (468)
T ss_pred Ccc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHh
Confidence 221 22333444567889999999999999862 2345789999999865321100 000123467999999
Q ss_pred cCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCC
Q 009851 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHP 384 (524)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~ 384 (524)
.++++++|||||||...++.+++++++.+|+.++++|||+++.... ...+.+|++|.++.++|+++++|+||.+||+|+
T Consensus 271 ~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~ 349 (468)
T PLN02207 271 DQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHK 349 (468)
T ss_pred cCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhccc
Confidence 9988899999999999999999999999999999999999985311 112358899999999999999999999999999
Q ss_pred CcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC----CCCCCCHHHHHHHHHHHhc--CH
Q 009851 385 SIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD----EGGIITREEIKNKVDQVLG--NQ 458 (524)
Q Consensus 385 ~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~----~~~~~t~~~l~~ai~~~l~--~~ 458 (524)
++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..+ ++..+++++|.++|+++|. ++
T Consensus 350 ~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~ 429 (468)
T PLN02207 350 AVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNN 429 (468)
T ss_pred ccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999877657999987431 1234699999999999997 67
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Q 009851 459 DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNA 495 (524)
Q Consensus 459 ~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 495 (524)
+||+||+++++++++++++||||+++++++++.+...
T Consensus 430 ~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 430 VVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988653
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-65 Score=520.37 Aligned_cols=432 Identities=26% Similarity=0.513 Sum_probs=335.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCC-CCcccHHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLGKL 81 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 81 (524)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... . ....++++..+|+++++. ........+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 46999999999999999999999999999999999998764211 0 111369999999888764 222234456
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCC-CCCC
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI-IDSH 160 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (524)
+..+...+.+.++++++.+..+.+.+++|||+|.+.+|+..+|+++|||++.|++++++.+..+.+++.++..+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 666666778888888887643222567999999999999999999999999999999888776665433322211 0000
Q ss_pred CCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHHH
Q 009851 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (524)
Q Consensus 161 ~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (524)
... .+....+|+++++...+++ ...... ...+...
T Consensus 160 ----------------------------------------~~~--~~~~~~iPg~~~~~~~dlp-~~~~~~--~~~~~~~ 194 (451)
T PLN02410 160 ----------------------------------------EPK--GQQNELVPEFHPLRCKDFP-VSHWAS--LESIMEL 194 (451)
T ss_pred ----------------------------------------ccc--cCccccCCCCCCCChHHCc-chhcCC--cHHHHHH
Confidence 000 0011136677666666666 322111 1122233
Q ss_pred HHHHHHhcccccEEEEcCCcccccccccCC-----CcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEe
Q 009851 241 LERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVS 315 (524)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs 315 (524)
+... ..+.+++.+++||+.+||+...+.. ++++.|||++...... ...+..+.+|.+|||.+++++|||||
T Consensus 195 ~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvs 270 (451)
T PLN02410 195 YRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVS 270 (451)
T ss_pred HHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEE
Confidence 3222 2356889999999999998755443 5799999998643211 01122345789999999889999999
Q ss_pred ecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC--CCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEecC
Q 009851 316 FGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--DANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHC 393 (524)
Q Consensus 316 ~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~--~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ItHg 393 (524)
|||...++.+++++++.+|+.++.+|||+++.+... .....+|++|.+|+++|+++++|+||.+||+|+++++|||||
T Consensus 271 fGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~ 350 (451)
T PLN02410 271 LGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHC 350 (451)
T ss_pred ccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecC
Confidence 999999999999999999999999999999843111 111348999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH---HHHHHHHHHHHH
Q 009851 394 GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ---DFKARALELKEK 470 (524)
Q Consensus 394 G~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~ 470 (524)
||||++||+++|||||++|+++||+.||+++++.+|+|+.+. ..+++++|+++|+++|.++ +||++|++++++
T Consensus 351 G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~ 426 (451)
T PLN02410 351 GWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQ 426 (451)
T ss_pred chhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987679999985 4689999999999999765 799999999999
Q ss_pred HHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 471 AMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 471 ~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
+++++++|||++++++++++.+..
T Consensus 427 ~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 427 LRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998754
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.3e-65 Score=517.04 Aligned_cols=432 Identities=27% Similarity=0.514 Sum_probs=336.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcC-hhhHHHhhhcCCCCCCCeEEEecCCCCCCCC--Ccc
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYN-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWE--DRN 76 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~ 76 (524)
|++.||+++|++++||++|+++||+.|++ +|+.|||++++.+ ...+.+. . ...++++|+.++++++.+. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~-~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---H-NNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---C-CCCCCEEEEEcCCCCCCccccccc
Confidence 78889999999999999999999999996 6999999999854 2211111 0 1113699999998887652 233
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCC
Q 009851 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (524)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (524)
+...++..+...+.+.++++++++...+ .+++|||+|.+.+|+..+|+++|||++.|++++++.+..+.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~----- 150 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG----- 150 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-----
Confidence 4556667777788899999998764322 3469999999999999999999999999999999887766553210
Q ss_pred CCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhH
Q 009851 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (524)
Q Consensus 157 ~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 236 (524)
. . ....+|+++.+...+++ .++........
T Consensus 151 ---------------------------------------------~---~-~~~~iPglp~l~~~dlp-~~~~~~~~~~~ 180 (455)
T PLN02152 151 ---------------------------------------------N---N-SVFEFPNLPSLEIRDLP-SFLSPSNTNKA 180 (455)
T ss_pred ---------------------------------------------C---C-CeeecCCCCCCchHHCc-hhhcCCCCchh
Confidence 0 0 01136777777777777 54432222223
Q ss_pred HHHHHHHHHHhcc--cccEEEEcCCcccccccccCCC--cccccccccccCC-CCCCCC---CCccCcchhhHhhhcCCC
Q 009851 237 FFDLLERNTRAMI--AVNFHFCNSTYELESEAFTTFP--ELLPIGPLLASNR-LGNTAG---YFWCEDSNCLKWLDQQQP 308 (524)
Q Consensus 237 ~~~~~~~~~~~~~--~~~~~l~ns~~~le~~~~~~~~--~v~~VGp~~~~~~-~~~~~~---~~~~~~~~l~~~l~~~~~ 308 (524)
+...+.+..+... .++.+++||+.+||+...+... .++.|||+..... .....+ ..++.+.+|.+|||.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~ 260 (455)
T PLN02152 181 AQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTE 260 (455)
T ss_pred HHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccCccccccccccCccccccccchHHHHHhhCCCC
Confidence 3344444444432 3468999999999988776653 6999999975321 000000 112234589999999988
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC------CC--CCCCChhhHHhhcCCeeEEeccChhhh
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT------DA--NDRYPEGFQERVAARGQMISWAPQLRV 380 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~------~~--~~~l~~~~~~~~~~n~~v~~~vpq~~l 380 (524)
++||||||||...++.+++++++.+|+.++.+|||+++.+... .. ...++++|.++.++|+++.+|+||.+|
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~i 340 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEV 340 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHH
Confidence 8999999999999999999999999999999999999753110 00 113478999999999999999999999
Q ss_pred hcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH--
Q 009851 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-- 458 (524)
Q Consensus 381 L~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~-- 458 (524)
|+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+..++...+++++|+++|+++|+|+
T Consensus 341 L~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~ 420 (455)
T PLN02152 341 LRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSV 420 (455)
T ss_pred hCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999998866788777543334579999999999999865
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Q 009851 459 DFKARALELKEKAMSSVREGGSSYKTFQNFLQWT 492 (524)
Q Consensus 459 ~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i 492 (524)
+||+||+++++++++++++|||+++++++++++|
T Consensus 421 ~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 421 ELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 4899999999999999999999999999999876
No 5
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.4e-64 Score=517.21 Aligned_cols=446 Identities=30% Similarity=0.541 Sum_probs=344.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhh---hcC-CCC-CCCeEEEecCCCCCCC-CCcc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL---QGK-NYL-GEQIHLVSIPDGMEPW-EDRN 76 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~---~~~-~~~-~~~i~~~~~~~~~~~~-~~~~ 76 (524)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.... .+. ... ...++|..+|++++.+ +...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 589999999999999999999999999999999999998776654311 000 001 1237777788877654 2223
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCC
Q 009851 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (524)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (524)
+...++..+...+.+.++++++.+..+. .+++|||+|.+++|+..+|+++|||.++|++++++.+..+.+++ .+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HGL 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hcC
Confidence 4555666666677888888888764322 34599999999999999999999999999999998888776642 111
Q ss_pred CCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhH
Q 009851 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (524)
Q Consensus 157 ~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 236 (524)
.+.. ........+ .+|+++.+...+++ .++........
T Consensus 162 ~~~~----------------------------------------~~~~~~~~~-~iPglp~l~~~dlp-~~~~~~~~~~~ 199 (480)
T PLN02555 162 VPFP----------------------------------------TETEPEIDV-QLPCMPLLKYDEIP-SFLHPSSPYPF 199 (480)
T ss_pred CCcc----------------------------------------cccCCCcee-ecCCCCCcCHhhCc-ccccCCCCchH
Confidence 0000 000001112 47888888888888 44432222334
Q ss_pred HHHHHHHHHHhcccccEEEEcCCcccccccccCC---CcccccccccccCCC--CCCCCCCccCcchhhHhhhcCCCCce
Q 009851 237 FFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASNRL--GNTAGYFWCEDSNCLKWLDQQQPSSV 311 (524)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---~~v~~VGp~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~v 311 (524)
+.+.+.+..+...+++.+++||+.+||....... ..++.|||+...... ....+..+..+++|.+||+.+++++|
T Consensus 200 ~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sV 279 (480)
T PLN02555 200 LRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSV 279 (480)
T ss_pred HHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCce
Confidence 4444555556677889999999999998755433 138999999753211 10011123456789999999988899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC--CCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceE
Q 009851 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--DANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACF 389 (524)
Q Consensus 312 V~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~--~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ 389 (524)
|||||||+..++.+++.+++.+++.++++|||+++..... .....+|+++.+++++|+++++|+||.+||+|++|++|
T Consensus 280 vyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~F 359 (480)
T PLN02555 280 VYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACF 359 (480)
T ss_pred eEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeE
Confidence 9999999999999999999999999999999999743111 11235788999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC--CCCCCCHHHHHHHHHHHhcCH---HHHHHH
Q 009851 390 LSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD--EGGIITREEIKNKVDQVLGNQ---DFKARA 464 (524)
Q Consensus 390 ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~--~~~~~t~~~l~~ai~~~l~~~---~~r~~a 464 (524)
||||||||++||+++|||||++|+++||+.||+++++.||+|+.+... +...+++++|.++|+++|.++ ++|+||
T Consensus 360 vtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra 439 (480)
T PLN02555 360 VTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNA 439 (480)
T ss_pred EecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999999999999999999999999999999998878999999531 124689999999999999754 699999
Q ss_pred HHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Q 009851 465 LELKEKAMSSVREGGSSYKTFQNFLQWTMNA 495 (524)
Q Consensus 465 ~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 495 (524)
++++++.+++++||||++++++++|+.+..-
T Consensus 440 ~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 440 LKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988754
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-64 Score=512.77 Aligned_cols=422 Identities=28% Similarity=0.566 Sum_probs=331.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCC--CCcccHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW--EDRNDLGK 80 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~ 80 (524)
+.||+++|++++||++|+++||+.|+.+|+.|||++++.+...+... ..++++++.+|+++++. +...+...
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~~~~~ 78 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAGSVPE 78 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCcccccccCHHH
Confidence 46999999999999999999999999999999999999876544321 11369999999988763 22334567
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCc-cEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCC
Q 009851 81 LIEKCLQVMPGKLEELIEEINSREDEKI-DCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~-D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
++..+...+.+.++++++.+... .+| +|||+|.+.+|+..+|+++|||++.|++++++....+.+. .. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~--~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~~---- 150 (449)
T PLN02173 79 YLQNFKTFGSKTVADIIRKHQST--DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NNG---- 150 (449)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcc--CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-ccC----
Confidence 77777778888999999876432 244 9999999999999999999999999999887766543321 10 000
Q ss_pred CCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHH
Q 009851 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFD 239 (524)
Q Consensus 160 ~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 239 (524)
.....+|+++.+...+++ .++..........+
T Consensus 151 -----------------------------------------------~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~ 182 (449)
T PLN02173 151 -----------------------------------------------SLTLPIKDLPLLELQDLP-TFVTPTGSHLAYFE 182 (449)
T ss_pred -----------------------------------------------CccCCCCCCCCCChhhCC-hhhcCCCCchHHHH
Confidence 000124566666667776 43332222223444
Q ss_pred HHHHHHHhcccccEEEEcCCcccccccccCC---CcccccccccccC----CC-CCC--CCCCc--cCcchhhHhhhcCC
Q 009851 240 LLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASN----RL-GNT--AGYFW--CEDSNCLKWLDQQQ 307 (524)
Q Consensus 240 ~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---~~v~~VGp~~~~~----~~-~~~--~~~~~--~~~~~l~~~l~~~~ 307 (524)
.+.+..+...+++.+++||+.+||+...+.. ++++.|||++... .. .+. ..+.+ ..+++|.+||+.++
T Consensus 183 ~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~ 262 (449)
T PLN02173 183 MVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRP 262 (449)
T ss_pred HHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCC
Confidence 4445556678899999999999998755443 4699999997421 00 000 01111 23456999999998
Q ss_pred CCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeeEEeccChhhhhcCCCc
Q 009851 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQLRVLNHPSI 386 (524)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~-~~n~~v~~~vpq~~lL~~~~v 386 (524)
++++|||||||....+.+++.+++.+| ++.+|+|+++.+ ....+|+++.++. ++|+++++|+||.+||+|++|
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v 336 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAI 336 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCcc
Confidence 899999999999999999999999999 678899999753 1235788998888 588999999999999999999
Q ss_pred ceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC-CCCCCHHHHHHHHHHHhcCH---HHHH
Q 009851 387 ACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGNQ---DFKA 462 (524)
Q Consensus 387 ~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~-~~~~t~~~l~~ai~~~l~~~---~~r~ 462 (524)
++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+..++ +..+++++|.++|+++|.|+ ++|+
T Consensus 337 ~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~ 416 (449)
T PLN02173 337 GCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKE 416 (449)
T ss_pred ceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999999999999999999999999999998679999987533 13479999999999999764 6899
Q ss_pred HHHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Q 009851 463 RALELKEKAMSSVREGGSSYKTFQNFLQWT 492 (524)
Q Consensus 463 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i 492 (524)
||++++++.++++++|||++++++++++.+
T Consensus 417 ~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 417 NAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999877
No 7
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.7e-64 Score=517.97 Aligned_cols=445 Identities=24% Similarity=0.443 Sum_probs=327.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcChhhHH--H-hhhcCC-CCCCCeEEEecCCCCCCCCCcc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVV--E-SLQGKN-YLGEQIHLVSIPDGMEPWEDRN 76 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~i~--~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 76 (524)
|.||+++|++++||++|+++||+.|+.+| ..|||++++.+...+. + ...+.. ...++++++.+|++.+......
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 67999999999999999999999999998 8899999987754221 1 011000 0123699999997764321111
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCC
Q 009851 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (524)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (524)
....++..+...+.+.++++++......+.+++|||+|.+++|+..+|+++|||++.|+++++..+..+.+++..+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 82 TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 22222333333333333333332211111234899999999999999999999999999999999888887655322211
Q ss_pred CCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCC-CCCcccccccccCCCchhh
Q 009851 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMP-EMNSRDCFWAHIGDWTSQK 235 (524)
Q Consensus 157 ~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~~~ 235 (524)
.+.. +..+.... ..+|+++ ++...+++ ..... +
T Consensus 162 ~~~~----------------------------------------~~~~~~~~-v~iPgl~~pl~~~dlp-~~~~~----~ 195 (481)
T PLN02554 162 YDVS----------------------------------------ELEDSEVE-LDVPSLTRPYPVKCLP-SVLLS----K 195 (481)
T ss_pred cCcc----------------------------------------ccCCCCce-eECCCCCCCCCHHHCC-CcccC----H
Confidence 1000 01000011 1367763 56666776 33321 1
Q ss_pred HHHHHHHHHHHhcccccEEEEcCCccccccccc-------CCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCC
Q 009851 236 IFFDLLERNTRAMIAVNFHFCNSTYELESEAFT-------TFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQP 308 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~-------~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 308 (524)
.+...+.+....+.+++.+++||+.+||..... ..|+++.|||+........ ....+.+.+|.+||+.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~--~~~~~~~~~~~~wLd~~~~ 273 (481)
T PLN02554 196 EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD--DSKDEKQSEILRWLDEQPP 273 (481)
T ss_pred HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCcccccccc--ccccccchHHHHHHhcCCC
Confidence 233444455566778999999999999985443 3368999999943221110 0001344689999999888
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCC-------C---CCCCCCChhhHHhhcCCeeEEeccChh
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDIT-------T---DANDRYPEGFQERVAARGQMISWAPQL 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~-------~---~~~~~l~~~~~~~~~~n~~v~~~vpq~ 378 (524)
++||||||||+..++.+++++++.+|+.++++|||+++.... . .....+|++|.++.++|+++++|+||.
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~ 353 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQV 353 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHH
Confidence 899999999998899999999999999999999999975311 0 011236899999999999999999999
Q ss_pred hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHh-hccccceeeEEecC--------CCCCCCHHHHHH
Q 009851 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY-ICDFWKVGLKFDRD--------EGGIITREEIKN 449 (524)
Q Consensus 379 ~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~r-v~~~lG~G~~~~~~--------~~~~~t~~~l~~ 449 (524)
+||+|++|++|||||||||++||+++|||||++|+++||+.||++ +++ +|+|+.++.. +...+++++|.+
T Consensus 354 ~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~ 432 (481)
T PLN02554 354 AVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIER 432 (481)
T ss_pred HHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHH
Confidence 999999999999999999999999999999999999999999955 656 7999998641 124689999999
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 450 KVDQVLG-NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 450 ai~~~l~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
+|+++|. |++||+||+++++++++++++|||++.+++++++.+.+.+
T Consensus 433 av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 433 GIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhC
Confidence 9999996 7899999999999999999999999999999999998764
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.6e-63 Score=505.48 Aligned_cols=430 Identities=27% Similarity=0.453 Sum_probs=331.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCC----CCCCCCCccc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD----GMEPWEDRND 77 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ 77 (524)
+.||+++|++++||++|++.||+.|+ ++|++|||++++.+...+.+... ...+++++.+|. ++++. ..+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~--~~~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDP--SAH 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCC--Ccc
Confidence 67999999999999999999999998 78999999999988765533211 113688988884 33311 112
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCC
Q 009851 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGII 157 (524)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (524)
....+......+.+.++++++++. .+|+|||+|.+++|+..+|+++|||++.|+++++..+..+.+.+.+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 223333344456677777777642 4689999999999999999999999999999998877766554432111000
Q ss_pred CCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHH
Q 009851 158 DSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIF 237 (524)
Q Consensus 158 ~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 237 (524)
+ + .... .. ..+|+++.+...+++ ..+.... ...
T Consensus 155 ~-----------~------------------------------~~~~--~~-~~iPg~~~l~~~dlp-~~~~~~~--~~~ 187 (481)
T PLN02992 155 E-----------H------------------------------TVQR--KP-LAMPGCEPVRFEDTL-DAYLVPD--EPV 187 (481)
T ss_pred c-----------c------------------------------ccCC--CC-cccCCCCccCHHHhh-HhhcCCC--cHH
Confidence 0 0 0000 11 146777777777777 3222221 123
Q ss_pred HHHHHHHHHhcccccEEEEcCCcccccccccCC-----------CcccccccccccCCCCCCCCCCccCcchhhHhhhcC
Q 009851 238 FDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQ 306 (524)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----------~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 306 (524)
...+.+......+++.+++||+.+||....+.. +.++.|||+....... ..+++|.+|||.+
T Consensus 188 ~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~ 260 (481)
T PLN02992 188 YRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQ 260 (481)
T ss_pred HHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCccCCcCCC-------cchHHHHHHHHcC
Confidence 344445555677899999999999998766532 4699999997532211 2456799999999
Q ss_pred CCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC---------------C-CCCCCChhhHHhhcCCee
Q 009851 307 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT---------------D-ANDRYPEGFQERVAARGQ 370 (524)
Q Consensus 307 ~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~---------------~-~~~~l~~~~~~~~~~n~~ 370 (524)
++++||||||||...++.+++++++.+|+.++++|||+++..... . ....+|++|.+|+.++..
T Consensus 261 ~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~ 340 (481)
T PLN02992 261 PNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGF 340 (481)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCE
Confidence 889999999999999999999999999999999999999642110 0 023588999999998887
Q ss_pred EE-eccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHH
Q 009851 371 MI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKN 449 (524)
Q Consensus 371 v~-~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ 449 (524)
++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.. +..++.++|.+
T Consensus 341 vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~ 419 (481)
T PLN02992 341 VVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEA 419 (481)
T ss_pred EEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHH
Confidence 66 99999999999999999999999999999999999999999999999999996337999999742 13589999999
Q ss_pred HHHHHhcCH---HHHHHHHHHHHHHHhhhh--cCCCcHHHHHHHHHHHHHHhh
Q 009851 450 KVDQVLGNQ---DFKARALELKEKAMSSVR--EGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 450 ai~~~l~~~---~~r~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~i~~~~~ 497 (524)
+|+++|.|+ .+|++|++++++++++++ +||||+++++++++.+.+.++
T Consensus 420 av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 420 LVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 999999763 799999999999999995 699999999999999988765
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.6e-63 Score=510.46 Aligned_cols=439 Identities=26% Similarity=0.474 Sum_probs=336.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCcCh----hhHHHhhhcCCCCCCCeEEEecCCCCCCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG----FRVTFVNTDYNH----KRVVESLQGKNYLGEQIHLVSIPDGMEPW 72 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rG----H~Vt~~~~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 72 (524)
|.|.||+++|++++||++|++.||+.|+.+| +.|||++++.+. ..+.....+......+++++.+|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8899999999999999999999999999997 799999987653 23433221111111269999999764322
Q ss_pred CCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhccccc
Q 009851 73 EDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLI 152 (524)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 152 (524)
...+...++..+...+.+.++++++.+. .+++|||+|.+++|+..+|+++|||++.|+++++..+..+.+.+...
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1123445566566677888888887641 35799999999999999999999999999999998888777754421
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCc
Q 009851 153 DDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWT 232 (524)
Q Consensus 153 ~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 232 (524)
..... +.......+ .+|+++.+...+++ .++....
T Consensus 156 ~~~~~-------------------------------------------~~~~~~~~~-~iPGlp~l~~~dlp-~~~~~~~ 190 (480)
T PLN00164 156 EEVAV-------------------------------------------EFEEMEGAV-DVPGLPPVPASSLP-APVMDKK 190 (480)
T ss_pred ccccC-------------------------------------------cccccCcce-ecCCCCCCChHHCC-chhcCCC
Confidence 11000 000000111 36888777788887 4333221
Q ss_pred hhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC-----------CcccccccccccCCCCCCCCCCccCcchhhH
Q 009851 233 SQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----------PELLPIGPLLASNRLGNTAGYFWCEDSNCLK 301 (524)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----------~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~ 301 (524)
......+....+...+++.+++||+.+||+...... ++++.|||++...... ...+.+++|.+
T Consensus 191 --~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~ 264 (480)
T PLN00164 191 --SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVR 264 (480)
T ss_pred --cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccC----CCccchHHHHH
Confidence 111223333345567899999999999998654332 5799999998532111 11235678999
Q ss_pred hhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC--------CCCCCCChhhHHhhcCCeeEE-
Q 009851 302 WLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--------DANDRYPEGFQERVAARGQMI- 372 (524)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~--------~~~~~l~~~~~~~~~~n~~v~- 372 (524)
||+.+++++||||||||...++.+++.+++.+|+.++.+|||+++..... .....+|+++.+++.+++.++
T Consensus 265 wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~ 344 (480)
T PLN00164 265 WLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWP 344 (480)
T ss_pred HHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEe
Confidence 99999889999999999989999999999999999999999999854210 011248899999999888877
Q ss_pred eccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC--CCCCCHHHHHHH
Q 009851 373 SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE--GGIITREEIKNK 450 (524)
Q Consensus 373 ~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~--~~~~t~~~l~~a 450 (524)
+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++ +..+++++|.++
T Consensus 345 ~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~a 424 (480)
T PLN00164 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERA 424 (480)
T ss_pred ecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998765479999986431 134799999999
Q ss_pred HHHHhcCH-----HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Q 009851 451 VDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNA 495 (524)
Q Consensus 451 i~~~l~~~-----~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 495 (524)
|+++|.|+ .+|++|+++++++++++++|||++++++++++.+...
T Consensus 425 v~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 425 VRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999763 4899999999999999999999999999999988653
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5e-63 Score=506.25 Aligned_cols=429 Identities=28% Similarity=0.498 Sum_probs=327.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQC--LAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~--L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (524)
+.||+|+|+|++||++|++.||++ |++||++|||++++.+...+.+.. .....+++..+++++++... .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 579999999999999999999999 569999999999998876653321 11246888888887776532 34445
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCCC
Q 009851 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (524)
++..+.+.+.+.++++++. .++||||+|.+.+|+..+|+++|||.+.|++.++..+..+.+.+.. .+..
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~--- 151 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSF--- 151 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCC---
Confidence 6666666666667777765 5799999999999999999999999999999988877766553210 0000
Q ss_pred CCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHHH
Q 009851 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (524)
Q Consensus 161 ~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (524)
|. ..+ ......+|+++.+...+++ ..+..... ..+...
T Consensus 152 -----------~~----------------------------~~~-~~~~~~~Pgl~~~~~~dl~-~~~~~~~~-~~~~~~ 189 (456)
T PLN02210 152 -----------PD----------------------------LED-LNQTVELPALPLLEVRDLP-SFMLPSGG-AHFNNL 189 (456)
T ss_pred -----------Cc----------------------------ccc-cCCeeeCCCCCCCChhhCC-hhhhcCCc-hHHHHH
Confidence 00 000 0011235677666667776 33322111 112222
Q ss_pred HHHHHHhcccccEEEEcCCcccccccccCC---CcccccccccccC---CCCC---CC--CCCccCcchhhHhhhcCCCC
Q 009851 241 LERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASN---RLGN---TA--GYFWCEDSNCLKWLDQQQPS 309 (524)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---~~v~~VGp~~~~~---~~~~---~~--~~~~~~~~~l~~~l~~~~~~ 309 (524)
..+..+....++.+++||+.++|....+.. +++++|||++... .... .. ...+..+++|.+||+.++++
T Consensus 190 ~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~ 269 (456)
T PLN02210 190 MAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARS 269 (456)
T ss_pred HHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCC
Confidence 223334556788999999999998766552 5799999997421 1000 00 01234567899999998888
Q ss_pred ceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeeEEeccChhhhhcCCCcce
Q 009851 310 SVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQLRVLNHPSIAC 388 (524)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~-~~n~~v~~~vpq~~lL~~~~v~~ 388 (524)
+||||||||....+.+++++++.+|+.++.+|||+++.... ...++.+.++. ++|+++++|+||.+||+|+++++
T Consensus 270 svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~----~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~ 345 (456)
T PLN02210 270 SVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK----AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISC 345 (456)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc----ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCe
Confidence 99999999998889999999999999999999999975311 12345566666 48888999999999999999999
Q ss_pred EEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC-CCCCCHHHHHHHHHHHhcCH---HHHHHH
Q 009851 389 FLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGNQ---DFKARA 464 (524)
Q Consensus 389 ~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~-~~~~t~~~l~~ai~~~l~~~---~~r~~a 464 (524)
|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++ ++.+++++|+++|+++|.|+ ++|+||
T Consensus 346 FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a 425 (456)
T PLN02210 346 FVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRA 425 (456)
T ss_pred EEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999987569999986532 24689999999999999876 499999
Q ss_pred HHHHHHHHhhhhcCCCcHHHHHHHHHHHH
Q 009851 465 LELKEKAMSSVREGGSSYKTFQNFLQWTM 493 (524)
Q Consensus 465 ~~l~~~~~~~~~~~g~~~~~~~~~~~~i~ 493 (524)
++|++..++++++||||+++++++++.|.
T Consensus 426 ~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 426 AELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999998774
No 11
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.6e-63 Score=506.33 Aligned_cols=443 Identities=28% Similarity=0.475 Sum_probs=328.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC----CCCCCC-CCccc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPW-EDRND 77 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----~~~~~~-~~~~~ 77 (524)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+++... ...+++++.+| ++++++ +...+
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 6899999999999999999999999999999999999998877765421 11357776654 133333 11111
Q ss_pred ----HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccc
Q 009851 78 ----LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (524)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~ 153 (524)
....+......+.+.+.++++.+ . .+++|||+|.+.+|+..+|+++|||++.|++++++.+..+.+++....
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 11223333334455555555542 1 467999999999999999999999999999999998888776432100
Q ss_pred cCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCch
Q 009851 154 DGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTS 233 (524)
Q Consensus 154 ~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 233 (524)
.... + .-....-....+|+++.+...+++ .++.....
T Consensus 161 ~~~~--------------~----------------------------~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~ 197 (477)
T PLN02863 161 TKIN--------------P----------------------------DDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVE 197 (477)
T ss_pred cccc--------------c----------------------------cccccccccCCCCCCCCcChHhCc-hhhhccCc
Confidence 0000 0 000000001135777777777777 33321111
Q ss_pred hhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC------CcccccccccccCCCCC---CCC-CCccCcchhhHhh
Q 009851 234 QKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF------PELLPIGPLLASNRLGN---TAG-YFWCEDSNCLKWL 303 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~------~~v~~VGp~~~~~~~~~---~~~-~~~~~~~~l~~~l 303 (524)
.....+.+.+.......++.+++||+.+||+...+.. ++++.|||+........ ..+ +....+++|.+||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WL 277 (477)
T PLN02863 198 GDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWL 277 (477)
T ss_pred cchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHH
Confidence 1223333444444456778899999999998766442 57999999975321100 001 1111356799999
Q ss_pred hcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeeE-EeccChhhhh
Q 009851 304 DQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQM-ISWAPQLRVL 381 (524)
Q Consensus 304 ~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~-~~~~~l~~~~~~~~~~n~~v-~~~vpq~~lL 381 (524)
+.+++++||||||||....+.+++.+++.+|+.++.+|||+++..... .....+|+++.++..++..+ .+|+||.+||
T Consensus 278 d~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL 357 (477)
T PLN02863 278 DTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAIL 357 (477)
T ss_pred hcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHh
Confidence 999888999999999999999999999999999999999999753211 11246889998888765555 5999999999
Q ss_pred cCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHh-cCHHH
Q 009851 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL-GNQDF 460 (524)
Q Consensus 382 ~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l-~~~~~ 460 (524)
+|++|++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++....+++++.++|+++| ++++|
T Consensus 358 ~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~ 437 (477)
T PLN02863 358 SHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVE 437 (477)
T ss_pred cCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHH
Confidence 99999999999999999999999999999999999999999977658999998543223568999999999999 67899
Q ss_pred HHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 461 KARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 461 r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
|+||+++++++++++++|||++++++++++.+...+
T Consensus 438 r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 438 RERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998754
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-63 Score=501.80 Aligned_cols=431 Identities=25% Similarity=0.464 Sum_probs=322.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCC---
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTF--VNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE--- 73 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~--~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~--- 73 (524)
|.+.||+++|++++||++|++.||+.|+.+| +.||+ +++..+...+.....+.....++++++.+|++.+...
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 7889999999999999999999999999998 55665 4444433322221111111123699999997764221
Q ss_pred CcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccc
Q 009851 74 DRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (524)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~ 153 (524)
...+....+..+...+.+.++++++.+.. . .+++|||+|.+.+|+..+|+++|||++.|++++++.+..+.+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 11233334444555677778888887522 1 346999999999999999999999999999999998888777543211
Q ss_pred cCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCch
Q 009851 154 DGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTS 233 (524)
Q Consensus 154 ~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 233 (524)
.. +.. ... ......+|+++.+...+++ .+.....
T Consensus 159 ~~--~~~----------------------------------------~~~--~~~~v~iPg~p~l~~~dlp-~~~~~~~- 192 (451)
T PLN03004 159 TT--PGK----------------------------------------NLK--DIPTVHIPGVPPMKGSDMP-KAVLERD- 192 (451)
T ss_pred cc--ccc----------------------------------------ccc--cCCeecCCCCCCCChHHCc-hhhcCCc-
Confidence 10 000 000 0011236777777777887 4333221
Q ss_pred hhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC------CcccccccccccCCCCCCCCCCccCcchhhHhhhcCC
Q 009851 234 QKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQ 307 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~------~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 307 (524)
......+.+....+.+++.+++||+.+||+...+.. ++++.|||+........ .. ...+.+|.+|||.++
T Consensus 193 -~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~--~~-~~~~~~c~~wLd~~~ 268 (451)
T PLN03004 193 -DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIED--RN-DNKAVSCLNWLDSQP 268 (451)
T ss_pred -hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccc--cc-cchhhHHHHHHHhCC
Confidence 123344445555667888999999999998654422 47999999975321110 01 123457999999998
Q ss_pred CCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCC----CCC-CCChhhHHhhcCCee-EEeccChhhhh
Q 009851 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTD----AND-RYPEGFQERVAARGQ-MISWAPQLRVL 381 (524)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~----~~~-~l~~~~~~~~~~n~~-v~~~vpq~~lL 381 (524)
+++||||||||...++.+++++|+.+|+.++++|||+++.....+ ... .+|++|++|..++.. +.+|+||.+||
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL 348 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVL 348 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHh
Confidence 899999999999999999999999999999999999998531100 112 278999999986655 55999999999
Q ss_pred cCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHH
Q 009851 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 382 ~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r 461 (524)
+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.++...+++++|.++|+++|+|++||
T Consensus 349 ~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 349 NHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred CCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999997657999999753223579999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcHH
Q 009851 462 ARALELKEKAMSSVREGGSSYK 483 (524)
Q Consensus 462 ~~a~~l~~~~~~~~~~~g~~~~ 483 (524)
++|++++++.+.++++||||++
T Consensus 429 ~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 429 ERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999864
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.4e-62 Score=496.37 Aligned_cols=433 Identities=26% Similarity=0.448 Sum_probs=330.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcChhhHH--HhhhcCCCCCCCeEEEecCCCCCCCC-C-c
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVV--ESLQGKNYLGEQIHLVSIPDGMEPWE-D-R 75 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~i~--~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~ 75 (524)
|.+.||+++|+|++||++|++.||+.|+.+ |..|||+++..+...+. ....+. ....+++++.+|....++- . .
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAA-AARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccc-cCCCceEEEECCCCccccCCCCC
Confidence 778899999999999999999999999987 99999999887654431 111110 0112599999985432220 1 1
Q ss_pred ccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCc-eEEEccchHHHHHHHhhccccccc
Q 009851 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVR-GAVFWPSSAASVALVFRIPKLIDD 154 (524)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP-~i~~~~~~~~~~~~~~~~~~~~~~ 154 (524)
.+....+......+.+.++++++.+. .+++|||+|.+++|+..+|+++||| .+.++++.++....+.++|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~- 154 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT- 154 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc-
Confidence 13333344455678888999988753 3679999999999999999999999 57888888877766666544321
Q ss_pred CCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchh
Q 009851 155 GIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQ 234 (524)
Q Consensus 155 ~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 234 (524)
..... .......+ .+|+++.+...+++ ..+.+...
T Consensus 155 -~~~~~-----------------------------------------~~~~~~~~-~vPg~p~l~~~dlp-~~~~~~~~- 189 (470)
T PLN03015 155 -VVEGE-----------------------------------------YVDIKEPL-KIPGCKPVGPKELM-ETMLDRSD- 189 (470)
T ss_pred -ccccc-----------------------------------------cCCCCCee-eCCCCCCCChHHCC-HhhcCCCc-
Confidence 00000 00000111 46888888888888 43332221
Q ss_pred hHHHHHHHHHHHhcccccEEEEcCCcccccccccCC-----------CcccccccccccCCCCCCCCCCccCcchhhHhh
Q 009851 235 KIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWL 303 (524)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----------~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l 303 (524)
.....+.+..+...+++.+++||+.+||+...... +.++.|||+..... . ...+.+|.+||
T Consensus 190 -~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~-~------~~~~~~~~~WL 261 (470)
T PLN03015 190 -QQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNV-H------VEKRNSIFEWL 261 (470)
T ss_pred -HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCcc-c------ccchHHHHHHH
Confidence 11223334445578899999999999998655332 46999999984311 0 12345799999
Q ss_pred hcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCC--------CC-CCCCCChhhHHhhcCCeeEE-e
Q 009851 304 DQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDIT--------TD-ANDRYPEGFQERVAARGQMI-S 373 (524)
Q Consensus 304 ~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~--------~~-~~~~l~~~~~~~~~~n~~v~-~ 373 (524)
|.+++++||||||||...++.+++++++.+|+.++++|||+++.... .. ..+.+|++|.+|+.++++++ +
T Consensus 262 d~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~ 341 (470)
T PLN03015 262 DKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQ 341 (470)
T ss_pred HhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEe
Confidence 99988999999999999999999999999999999999999974211 00 12358999999999999766 9
Q ss_pred ccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEec-CCCCCCCHHHHHHHHH
Q 009851 374 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR-DEGGIITREEIKNKVD 452 (524)
Q Consensus 374 ~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~-~~~~~~t~~~l~~ai~ 452 (524)
|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+.. ++...+++++|.++|+
T Consensus 342 W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~ 421 (470)
T PLN03015 342 WAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVR 421 (470)
T ss_pred cCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998665899999952 1124689999999999
Q ss_pred HHhc-----CHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Q 009851 453 QVLG-----NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWT 492 (524)
Q Consensus 453 ~~l~-----~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i 492 (524)
++|. .+++|+||++++++.++++++||||+++++++++.+
T Consensus 422 ~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 422 KIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 9994 237999999999999999999999999999999875
No 14
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2e-63 Score=515.79 Aligned_cols=441 Identities=16% Similarity=0.230 Sum_probs=326.0
Q ss_pred CCEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCC----CCc--
Q 009851 3 RPRVLVM-PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW----EDR-- 75 (524)
Q Consensus 3 ~~~il~~-~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~-- 75 (524)
.+||+++ |.++.||+..+..|+++|++|||+||++++..... .... ...+++.+.++...+.. ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4688855 88999999999999999999999999998753211 0000 11366666654111100 000
Q ss_pred ----c---cH----HHHHHHHHHhccHHH--HHHHHHHhcCCCCCccEEEECCCchhHHHHHHHc-CCceEEEccchHHH
Q 009851 76 ----N---DL----GKLIEKCLQVMPGKL--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKM-NVRGAVFWPSSAAS 141 (524)
Q Consensus 76 ----~---~~----~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~i~~~~~~~~~ 141 (524)
. +. ......+.+.|...+ .++.+.++.. ..++|++|+|.+..|++.+|+.+ ++|.|.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANK-NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcC-CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 0 00 011122223333333 1223333301 16899999999888999999999 99998887755443
Q ss_pred HHHHhhcccccccCCCCCCCCC-ccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCc
Q 009851 142 VALVFRIPKLIDDGIIDSHGMI-PCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNS 220 (524)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (524)
.... .+| +|.++||+|..++.++ +++++++|+.|+.....
T Consensus 172 ~~~~---------------~~gg~p~~~syvP~~~~~~~------------------------~~Msf~~R~~N~~~~~~ 212 (507)
T PHA03392 172 ENFE---------------TMGAVSRHPVYYPNLWRSKF------------------------GNLNVWETINEIYTELR 212 (507)
T ss_pred hHHH---------------hhccCCCCCeeeCCcccCCC------------------------CCCCHHHHHHHHHHHHH
Confidence 2211 225 9999999999988544 45666666555421100
Q ss_pred ccccccccCCCchhhHHHHHHHH----HHHhcccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCc
Q 009851 221 RDCFWAHIGDWTSQKIFFDLLER----NTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCED 296 (524)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~ 296 (524)
....+.... ...++...+.+.. ..+..++.+++|+|+++.+|++ ++++|++++|||++.+.... .+++
T Consensus 213 ~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~ 284 (507)
T PHA03392 213 LYNEFSLLA-DEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLD 284 (507)
T ss_pred HHHHHHHhh-HHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccCC-CCCCCCeeeecccccCCCCC------CCCC
Confidence 000000001 1122222222211 1233468899999999999998 89999999999998754221 2578
Q ss_pred chhhHhhhcCCCCceEEEeecCCC---CCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEe
Q 009851 297 SNCLKWLDQQQPSSVVYVSFGSFT---ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMIS 373 (524)
Q Consensus 297 ~~l~~~l~~~~~~~vV~vs~GS~~---~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~ 373 (524)
+++.+|++.++ +++|||||||.. ..+.+.++.+++|+++.+.+|||+++... .+ ...++|+++.+
T Consensus 285 ~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-------~~----~~~p~Nv~i~~ 352 (507)
T PHA03392 285 DYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-------EA----INLPANVLTQK 352 (507)
T ss_pred HHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-------Cc----ccCCCceEEec
Confidence 89999999875 579999999984 35788999999999999999999997541 11 12478899999
Q ss_pred ccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHH
Q 009851 374 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (524)
Q Consensus 374 ~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~ 453 (524)
|+||.+||+||+|++||||||+||++||+++|||||++|+++||+.||+|+++ .|+|+.+++ ..+++++|.++|++
T Consensus 353 w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~ 428 (507)
T PHA03392 353 WFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVD 428 (507)
T ss_pred CCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 599999987 66899999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhhc--cccccCCCCCCCCCCccceeeecccC
Q 009851 454 VLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALKK--QVIHLAPNTPAMNTADPFWACFNLAI 524 (524)
Q Consensus 454 ~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (524)
+|+|++||+||+++++.+++ .+.++++++++|+|+++++ ++.|+++...+| +|||||+|||
T Consensus 429 vl~~~~y~~~a~~ls~~~~~------~p~~~~~~av~~iE~v~r~~~g~~~lr~~~~~l----~~~qy~~lDv 491 (507)
T PHA03392 429 VIENPKYRKNLKELRHLIRH------QPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANV----SYSDYFMSYI 491 (507)
T ss_pred HhCCHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCCCcccccccccCC----CHHHHHHHHH
Confidence 99999999999999999998 5667899999999999994 678999988888 9999999996
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=9.2e-62 Score=494.79 Aligned_cols=434 Identities=28% Similarity=0.452 Sum_probs=319.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC----CCCCCC-CCccc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPW-EDRND 77 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----~~~~~~-~~~~~ 77 (524)
+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+.+.... ...+++++.+| ++++++ +...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCccCCCCCCcccccc
Confidence 56999999999999999999999999999999999999887666532110 11358999888 566654 21222
Q ss_pred H----HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccc
Q 009851 78 L----GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (524)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~ 153 (524)
. ..++....+.+++.++++++. .+++|||+|.+++|+..+|+++|||++.++++++..+..+.+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 2 134445556677778888876 578999999999999999999999999999999887776554322211
Q ss_pred cCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCC------CCCcccccccc
Q 009851 154 DGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMP------EMNSRDCFWAH 227 (524)
Q Consensus 154 ~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~l~~~~ 227 (524)
.+..... .+....+|++. .+...+++ .+
T Consensus 157 ~~~~~~~---------------------------------------------~~~~~~~p~~~P~~~~~~~~~~dlp-~~ 190 (472)
T PLN02670 157 GGDLRST---------------------------------------------AEDFTVVPPWVPFESNIVFRYHEVT-KY 190 (472)
T ss_pred cccCCCc---------------------------------------------cccccCCCCcCCCCccccccHHHhh-HH
Confidence 2211000 00000012211 12233444 22
Q ss_pred cCCCchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC-----CcccccccccccC-CCCCCCCCCccCcchhhH
Q 009851 228 IGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASN-RLGNTAGYFWCEDSNCLK 301 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----~~v~~VGp~~~~~-~~~~~~~~~~~~~~~l~~ 301 (524)
+............+.+....+.+++.+|+||+.+||+...+.. +.++.|||+.... ............+++|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~ 270 (472)
T PLN02670 191 VEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKE 270 (472)
T ss_pred HhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHH
Confidence 2111111111222233334567889999999999998866543 5799999997531 111000000011257999
Q ss_pred hhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC--CCCCCCChhhHHhhcCCeeEE-eccChh
Q 009851 302 WLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--DANDRYPEGFQERVAARGQMI-SWAPQL 378 (524)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~--~~~~~l~~~~~~~~~~n~~v~-~~vpq~ 378 (524)
|||.+++++||||||||+..++.+++.+++.+|+.++++|||+++..... .....+|++|.+++.+++.++ +|+||.
T Consensus 271 wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~ 350 (472)
T PLN02670 271 WLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQV 350 (472)
T ss_pred HHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHH
Confidence 99999888999999999999999999999999999999999999853211 112468999999999998886 999999
Q ss_pred hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC-CCCCCHHHHHHHHHHHhcC
Q 009851 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 379 ~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~-~~~~t~~~l~~ai~~~l~~ 457 (524)
+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++ +|+|+.++..+ ++.+++++|+++|+++|.|
T Consensus 351 ~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~ 429 (472)
T PLN02670 351 KILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVD 429 (472)
T ss_pred HHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988 69999997532 2458999999999999987
Q ss_pred H---HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 458 Q---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 458 ~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
+ +||+||+++++++++ .+...+.++.+++.+....
T Consensus 430 ~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 430 DAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred cchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHHhc
Confidence 6 799999999999998 5556777777777666543
No 16
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-61 Score=500.54 Aligned_cols=446 Identities=24% Similarity=0.415 Sum_probs=324.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC---EEEEEeCCcChh-hHHHhhhcCCCCCCCeEEEecCCCCCCC--CC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGF---RVTFVNTDYNHK-RVVESLQGKNYLGEQIHLVSIPDGMEPW--ED 74 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH---~Vt~~~~~~~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~~~--~~ 74 (524)
|++.||+++|++++||++|++.||+.|+.+|. .||++++..+.. .......+.....++|+|+.+|++..+. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 78899999999999999999999999999983 567776543321 1111111101112369999999654221 10
Q ss_pred -cccHHHHHHHHHHhccHHHHHHHHHHhcC----CCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcc
Q 009851 75 -RNDLGKLIEKCLQVMPGKLEELIEEINSR----EDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIP 149 (524)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (524)
.......+..+...+.+.++++++++..+ ++.+++|||+|.+++|+..+|+++|||++.|++++++.+..+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11222233444455666666766665321 1114699999999999999999999999999999998888777654
Q ss_pred cccccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCC-CCCCccccccccc
Q 009851 150 KLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKM-PEMNSRDCFWAHI 228 (524)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~~~~~ 228 (524)
..... .... .+ .......+ .+|++ +.+...+++ ...
T Consensus 161 ~~~~~--~~~~----------~~-----------------------------~~~~~~~~-~iPgl~~~l~~~dlp-~~~ 197 (475)
T PLN02167 161 ERHRK--TASE----------FD-----------------------------LSSGEEEL-PIPGFVNSVPTKVLP-PGL 197 (475)
T ss_pred Hhccc--cccc----------cc-----------------------------cCCCCCee-ECCCCCCCCChhhCc-hhh
Confidence 32111 0000 00 00000111 36776 356666666 322
Q ss_pred CCCchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccC-------CCcccccccccccCCCCCCCCCCccCcchhhH
Q 009851 229 GDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT-------FPELLPIGPLLASNRLGNTAGYFWCEDSNCLK 301 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~-------~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~ 301 (524)
.... ..+.+.+..+...+++.+|+||+.+||+..... .|+++.|||++........ ......+.+|.+
T Consensus 198 ~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~-~~~~~~~~~~~~ 272 (475)
T PLN02167 198 FMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSP-NLDSSDRDRIMR 272 (475)
T ss_pred hCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCC-CCCcchhHHHHH
Confidence 2211 122333444556788999999999999875543 2689999999864321100 000112367999
Q ss_pred hhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC--CCCCCCChhhHHhhcCCeeEEeccChhh
Q 009851 302 WLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--DANDRYPEGFQERVAARGQMISWAPQLR 379 (524)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~--~~~~~l~~~~~~~~~~n~~v~~~vpq~~ 379 (524)
||+.+++++||||||||+...+.+++.+++.+|+.++++|||+++.+... .....+|++|.+++.+++++++|+||.+
T Consensus 273 wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~ 352 (475)
T PLN02167 273 WLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVE 352 (475)
T ss_pred HHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHH
Confidence 99999888999999999988899999999999999999999999754211 1123589999999999999999999999
Q ss_pred hhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC---C-CCCCCHHHHHHHHHHHh
Q 009851 380 VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD---E-GGIITREEIKNKVDQVL 455 (524)
Q Consensus 380 lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~---~-~~~~t~~~l~~ai~~~l 455 (524)
||+|++|++|||||||||++||+++|||||++|+++||+.||+++.+.+|+|+.+... + ...+++++|.++|+++|
T Consensus 353 iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m 432 (475)
T PLN02167 353 ILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLM 432 (475)
T ss_pred HhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998744337999998642 1 13579999999999999
Q ss_pred cCH-HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 456 GNQ-DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 456 ~~~-~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
.++ .||+||+++++++++++++|||++++++++|+.|..
T Consensus 433 ~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 433 DGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 765 899999999999999999999999999999998764
No 17
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.5e-61 Score=487.57 Aligned_cols=419 Identities=27% Similarity=0.463 Sum_probs=316.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC--CCCCCC-CCccc--
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP--DGMEPW-EDRND-- 77 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~-- 77 (524)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+. ........+.+..+| ++++++ +...+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 68999999999999999999999999999999999999876655432 100001137777787 666655 21111
Q ss_pred --HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccC
Q 009851 78 --LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDG 155 (524)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (524)
....+....+.+++.++++++. .++||||+|. ++|+..+|+++|||++.|+++++..+..+.. + .+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 1122333334566777778776 4689999995 7899999999999999999999987776542 1 11
Q ss_pred CCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCC----CCCcccccccccC--
Q 009851 156 IIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMP----EMNSRDCFWAHIG-- 229 (524)
Q Consensus 156 ~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~l~~~~~~-- 229 (524)
..+ . | +|+++ .+...+++ .+..
T Consensus 151 ~~~-------~-----~---------------------------------------~pglp~~~v~l~~~~l~-~~~~~~ 178 (453)
T PLN02764 151 ELG-------V-----P---------------------------------------PPGYPSSKVLLRKQDAY-TMKNLE 178 (453)
T ss_pred cCC-------C-----C---------------------------------------CCCCCCCcccCcHhhCc-chhhcC
Confidence 000 0 0 12222 12222222 1100
Q ss_pred CCchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC-----CcccccccccccCCCCCCCCCCccCcchhhHhhh
Q 009851 230 DWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLD 304 (524)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~ 304 (524)
.......+...+.+..+.+.+++.+++||+.+||+...+.. ++++.|||+....... ...+++|.+|||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD 252 (453)
T PLN02764 179 PTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLS 252 (453)
T ss_pred CCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcccc------ccchhHHHHHHh
Confidence 00111122333344435667888999999999998766543 5699999997543110 123568999999
Q ss_pred cCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeeEE-eccChhhhhc
Q 009851 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQMI-SWAPQLRVLN 382 (524)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~-~~~~~l~~~~~~~~~~n~~v~-~~vpq~~lL~ 382 (524)
.+++++||||||||...++.+++.+++.+|+.++.+|+|+++.+.+. .....+|++|++++.+++.++ +|+||.+||+
T Consensus 253 ~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~ 332 (453)
T PLN02764 253 GYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILS 332 (453)
T ss_pred CCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhc
Confidence 99999999999999988999999999999999999999999853221 112468999999999988877 9999999999
Q ss_pred CCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH----
Q 009851 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ---- 458 (524)
Q Consensus 383 ~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~---- 458 (524)
|++|++|||||||||++||+++|||||++|++.||+.||+++++.+|+|+.+..++.+.+++++|+++|+++|+++
T Consensus 333 h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g 412 (453)
T PLN02764 333 HPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIG 412 (453)
T ss_pred CcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhH
Confidence 9999999999999999999999999999999999999999996547999887542213689999999999999764
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 459 -DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 459 -~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
++|++++++++++++ +||++++++++++.+.+..+
T Consensus 413 ~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 413 NLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhcc
Confidence 399999999999965 99999999999999988764
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2e-61 Score=497.82 Aligned_cols=430 Identities=27% Similarity=0.482 Sum_probs=330.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCC-CCcccHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLG 79 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~ 79 (524)
+.||+++|+|++||++|++.||++|+++ ||+|||++++.+...+++... ..+++|+.+|++.+.. +...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccccCHH
Confidence 5799999999999999999999999999 999999999998877765421 1379999999866544 2223455
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCC
Q 009851 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (524)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
.++..+...+.+.++++++.+. .++||||+|.+++|+..+|+++|||++.++++++..+..+.+.+.+...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 5666665567778888887753 368999999999999999999999999999999877777666543322211100
Q ss_pred CCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCC-ccccccccCCCCCCCcccccccccCCCchhhHHH
Q 009851 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPM-SMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFF 238 (524)
Q Consensus 160 ~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 238 (524)
. ... .......+|+++.+...+++ .++... .....
T Consensus 161 ~-----------------------------------------~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~ 196 (459)
T PLN02448 161 E-----------------------------------------LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVL 196 (459)
T ss_pred c-----------------------------------------cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHH
Confidence 0 000 00111135666666666666 333221 22223
Q ss_pred HHHHHHHHhcccccEEEEcCCcccccccccC-----CCcccccccccccCCCCCCCCC-Cc-cCcchhhHhhhcCCCCce
Q 009851 239 DLLERNTRAMIAVNFHFCNSTYELESEAFTT-----FPELLPIGPLLASNRLGNTAGY-FW-CEDSNCLKWLDQQQPSSV 311 (524)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~-----~~~v~~VGp~~~~~~~~~~~~~-~~-~~~~~l~~~l~~~~~~~v 311 (524)
+.+.+......+++.+++||+.+||+...+. .++++.|||+............ .. +.+.++.+||+.++++++
T Consensus 197 ~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~v 276 (459)
T PLN02448 197 KRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSV 276 (459)
T ss_pred HHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCce
Confidence 3444445556778899999999999874432 3478999999753211100000 01 123479999999888899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEe
Q 009851 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLS 391 (524)
Q Consensus 312 V~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~It 391 (524)
|||||||....+.+++++++++|+.++++|||+++.. ..++.++.++|+++++|+||.+||+|+++++|||
T Consensus 277 vyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvt 347 (459)
T PLN02448 277 LYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWT 347 (459)
T ss_pred EEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEe
Confidence 9999999988889999999999999999999987532 1245555667999999999999999999999999
Q ss_pred cCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC--CCCCCCHHHHHHHHHHHhcCH-----HHHHHH
Q 009851 392 HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD--EGGIITREEIKNKVDQVLGNQ-----DFKARA 464 (524)
Q Consensus 392 HgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~--~~~~~t~~~l~~ai~~~l~~~-----~~r~~a 464 (524)
||||||++||+++|||||++|+++||+.||+++++.||+|+.+... ++..+++++|+++|+++|.++ +||+||
T Consensus 348 HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a 427 (459)
T PLN02448 348 HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRA 427 (459)
T ss_pred cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999998767999888642 224579999999999999753 799999
Q ss_pred HHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 465 LELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 465 ~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
+++++++++++.+|||++++++++++.+.+
T Consensus 428 ~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 428 KELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999998763
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.6e-61 Score=491.96 Aligned_cols=413 Identities=27% Similarity=0.462 Sum_probs=307.9
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEec--C--CCCCCCCC-
Q 009851 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSI--P--DGMEPWED- 74 (524)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~--~--~~~~~~~~- 74 (524)
|+ +.||+++|++++||++|++.||+.|+++||+|||++++.+...+++.+. ...++++..+ + ++++.+..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCccc
Confidence 66 5699999999999999999999999999999999999887776654321 1124556544 3 45554422
Q ss_pred cccHH----HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhccc
Q 009851 75 RNDLG----KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPK 150 (524)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~ 150 (524)
..++. ..+......+.+.++++++. .++||||+| ++.|+..+|+++|||++.++++++..+. +.+.+.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 22222 12222233445556666654 578999999 6789999999999999999999887543 333221
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCC----CCccccccc
Q 009851 151 LIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE----MNSRDCFWA 226 (524)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~l~~~ 226 (524)
+... ..+|+++. +...+++ .
T Consensus 149 ----~~~~---------------------------------------------------~~~pglp~~~~~~~~~~~~-~ 172 (442)
T PLN02208 149 ----GKLG---------------------------------------------------VPPPGYPSSKVLFRENDAH-A 172 (442)
T ss_pred ----cccC---------------------------------------------------CCCCCCCCcccccCHHHcC-c
Confidence 0000 00133332 2233333 1
Q ss_pred ccCCCchhhHHHHHHH-HHHHhcccccEEEEcCCcccccccccC-----CCcccccccccccCCCCCCCCCCccCcchhh
Q 009851 227 HIGDWTSQKIFFDLLE-RNTRAMIAVNFHFCNSTYELESEAFTT-----FPELLPIGPLLASNRLGNTAGYFWCEDSNCL 300 (524)
Q Consensus 227 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ns~~~le~~~~~~-----~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~ 300 (524)
+ . ........+. +..+...+++.+++||+.+||+...+. .|+++.|||++...... .+.+++|.
T Consensus 173 ~--~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~ 242 (442)
T PLN02208 173 L--A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWS 242 (442)
T ss_pred c--c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHH
Confidence 1 0 0111122222 223456789999999999999865543 47899999998653211 13567899
Q ss_pred HhhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeeEE-eccChh
Q 009851 301 KWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQMI-SWAPQL 378 (524)
Q Consensus 301 ~~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~-~~~~~l~~~~~~~~~~n~~v~-~~vpq~ 378 (524)
+|||.+++++||||||||...++.+++.+++.+++.++.+|+|+++.+.+. .....+|++|.+++.++..++ +|+||.
T Consensus 243 ~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~ 322 (442)
T PLN02208 243 HFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQP 322 (442)
T ss_pred HHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHH
Confidence 999999888999999999998999999999999988999999999754211 122468999999987666555 999999
Q ss_pred hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH
Q 009851 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 379 ~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~ 458 (524)
+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.++++.+++++|.++|+++|+|+
T Consensus 323 ~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 323 LILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKD 402 (442)
T ss_pred HHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999877657999999753223589999999999999764
Q ss_pred -----HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Q 009851 459 -----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNA 495 (524)
Q Consensus 459 -----~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 495 (524)
++|++|+++++++.+ +||++++++++++.+.+.
T Consensus 403 ~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 403 SDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred chhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 499999999999854 889999999999998664
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.6e-60 Score=493.50 Aligned_cols=435 Identities=30% Similarity=0.524 Sum_probs=312.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCC----CCCCeEEEecC---CCCCCCCCc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNY----LGEQIHLVSIP---DGMEPWEDR 75 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~----~~~~i~~~~~~---~~~~~~~~~ 75 (524)
+.||+++|+|++||++|++.||++|++|||+|||++++.+...+++.+..... ....+..+.+| ++++++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 57999999999999999999999999999999999999988777665422110 11145556666 355543111
Q ss_pred c---------cHHHHHHHHH---HhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHH
Q 009851 76 N---------DLGKLIEKCL---QVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVA 143 (524)
Q Consensus 76 ~---------~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~ 143 (524)
. ....++..+. ..+.+.++++++. .++||||+|.+++|+..+|+++|||++.|++++++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 1 1223333333 2233333333332 57999999999999999999999999999998877655
Q ss_pred HHhhcccccccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCC---CCc
Q 009851 144 LVFRIPKLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE---MNS 220 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~ 220 (524)
............. ........ .+|+++. +..
T Consensus 159 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~-~~pg~p~~~~~~~ 192 (482)
T PLN03007 159 ASYCIRVHKPQKK---------------------------------------------VASSSEPF-VIPDLPGDIVITE 192 (482)
T ss_pred HHHHHHhcccccc---------------------------------------------cCCCCcee-eCCCCCCccccCH
Confidence 4443211000000 00000001 1344431 222
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC-----CcccccccccccCCCC---C-CCCC
Q 009851 221 RDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLG---N-TAGY 291 (524)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----~~v~~VGp~~~~~~~~---~-~~~~ 291 (524)
.+++ . ......+...+....+...+++.+++||+.+||....+.. ..+++|||+....... . ....
T Consensus 193 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~ 267 (482)
T PLN03007 193 EQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKK 267 (482)
T ss_pred HhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCc
Confidence 2222 1 1111223344444445667889999999999998745443 3689999986532210 0 0001
Q ss_pred CccCcchhhHhhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC-CCCCCCChhhHHhhc-CCe
Q 009851 292 FWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVA-ARG 369 (524)
Q Consensus 292 ~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~-~~~~~l~~~~~~~~~-~n~ 369 (524)
....+.+|.+||+.++++++|||||||+...+.+++.+++++|+.++++|||+++..... .....+|++|.++.. .|+
T Consensus 268 ~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~ 347 (482)
T PLN03007 268 ANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGL 347 (482)
T ss_pred cccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCE
Confidence 111346799999999889999999999988889999999999999999999999864211 112358899988875 455
Q ss_pred eEEeccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC-----CCCCCCH
Q 009851 370 QMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD-----EGGIITR 444 (524)
Q Consensus 370 ~v~~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~-----~~~~~t~ 444 (524)
++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+++|+.+... +...+++
T Consensus 348 ~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 427 (482)
T PLN03007 348 IIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISR 427 (482)
T ss_pred EEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccH
Confidence 56699999999999999999999999999999999999999999999999999887545666655321 1245899
Q ss_pred HHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 445 EEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 445 ~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
++|+++|+++|.|+ +||+||+++++++++++++|||++++++++++.+.+
T Consensus 428 ~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 428 EKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 99999999999887 899999999999999999999999999999998864
No 21
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.5e-60 Score=486.56 Aligned_cols=439 Identities=28% Similarity=0.514 Sum_probs=318.9
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC-----CCCCCC-C
Q 009851 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP-----DGMEPW-E 73 (524)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (524)
|+ +.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.....+.......++|+.+| ++++++ +
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 44 4699999999999999999999999999999999999988766654432111111248999888 577654 2
Q ss_pred Ccc-----cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhc
Q 009851 74 DRN-----DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRI 148 (524)
Q Consensus 74 ~~~-----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~ 148 (524)
... .+...+......+.+.++++++.. . .+++|||+|.+++|+..+|+++|||++.|++++++....+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~-~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K-PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C-CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 111 122222233344666777777652 1 4689999999999999999999999999999988776654332
Q ss_pred ccccccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCC---CCcccccc
Q 009851 149 PKLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE---MNSRDCFW 225 (524)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~ 225 (524)
........ ....... ..+|+++. +...+++
T Consensus 161 ~~~~~~~~---------------------------------------------~~~~~~~-~~iPg~p~~~~l~~~dlp- 193 (491)
T PLN02534 161 RLHNAHLS---------------------------------------------VSSDSEP-FVVPGMPQSIEITRAQLP- 193 (491)
T ss_pred HHhccccc---------------------------------------------CCCCCce-eecCCCCccccccHHHCC-
Confidence 11000000 0000001 12455552 5555565
Q ss_pred cccCCCchhhHHHHHHHHHHHh-cccccEEEEcCCcccccccccC-----CCcccccccccccCCCCC-C--CCCCcc-C
Q 009851 226 AHIGDWTSQKIFFDLLERNTRA-MIAVNFHFCNSTYELESEAFTT-----FPELLPIGPLLASNRLGN-T--AGYFWC-E 295 (524)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ns~~~le~~~~~~-----~~~v~~VGp~~~~~~~~~-~--~~~~~~-~ 295 (524)
..+..... .+.+...... ...++.+++||+.+||+...+. .++++.|||+........ . .+.... .
T Consensus 194 ~~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~ 269 (491)
T PLN02534 194 GAFVSLPD----LDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASID 269 (491)
T ss_pred hhhcCccc----HHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccc
Confidence 32211111 1222222222 3457789999999999865542 357999999975321100 0 011111 2
Q ss_pred cchhhHhhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC-C-CCCCCChhhHHhhc-CCeeEE
Q 009851 296 DSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-D-ANDRYPEGFQERVA-ARGQMI 372 (524)
Q Consensus 296 ~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~-~-~~~~l~~~~~~~~~-~n~~v~ 372 (524)
+++|.+|||.+++++||||||||.....++++.+++.+|+.++.+|||+++.+... . ....+|++|.+++. .++.+.
T Consensus 270 ~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~ 349 (491)
T PLN02534 270 ETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIK 349 (491)
T ss_pred hHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeecc
Confidence 35799999999888999999999999999999999999999999999999843111 1 11236889988865 455556
Q ss_pred eccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC-------CC--C-CC
Q 009851 373 SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD-------EG--G-II 442 (524)
Q Consensus 373 ~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~-------~~--~-~~ 442 (524)
+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+..+ ++ + .+
T Consensus 350 ~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v 429 (491)
T PLN02534 350 GWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLV 429 (491)
T ss_pred CCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999998779999988421 11 1 48
Q ss_pred CHHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 443 TREEIKNKVDQVLG---N--QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 443 t~~~l~~ai~~~l~---~--~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
++++|.++|+++|. + +++|+||+++++++++++.+||||++++++|++.|..
T Consensus 430 ~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 430 KKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999999995 2 4799999999999999999999999999999998864
No 22
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9e-60 Score=479.64 Aligned_cols=412 Identities=28% Similarity=0.475 Sum_probs=304.6
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC----CCCCCC-CC
Q 009851 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPW-ED 74 (524)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----~~~~~~-~~ 74 (524)
|. +.||+++|++++||++|+++||+.|+++|++|||++++.+...+++... ...+++|..++ ++++++ +.
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCcccc
Confidence 54 6799999999999999999999999999999999999988766654321 11247885543 566554 22
Q ss_pred cccHH----HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhccc
Q 009851 75 RNDLG----KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPK 150 (524)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~ 150 (524)
..++. ..+......+.+.++++++. .++||||+|. ++|+..+|+++|||++.|+++++.....+.+ +.
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~ 148 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR 148 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH
Confidence 22221 11222223344444444443 5789999995 8899999999999999999999987776554 11
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCC----CCccc--cc
Q 009851 151 LIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE----MNSRD--CF 224 (524)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~--l~ 224 (524)
.. .+ . | +|+++. +...+ ++
T Consensus 149 --~~-------~~--~-----~---------------------------------------~pg~p~~~~~~~~~~~~~~ 173 (446)
T PLN00414 149 --AE-------LG--F-----P---------------------------------------PPDYPLSKVALRGHDANVC 173 (446)
T ss_pred --hh-------cC--C-----C---------------------------------------CCCCCCCcCcCchhhcccc
Confidence 00 00 0 0 011111 11111 11
Q ss_pred ccccCCCchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCC-----CcccccccccccCCCCCCCCCCccCcchh
Q 009851 225 WAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTAGYFWCEDSNC 299 (524)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----~~v~~VGp~~~~~~~~~~~~~~~~~~~~l 299 (524)
.++. . ....+.+..+...+++.+++||+.+||+...+.. +.++.|||+........ + ...+++|
T Consensus 174 -~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~--~--~~~~~~~ 242 (446)
T PLN00414 174 -SLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKS--G--KPLEDRW 242 (446)
T ss_pred -hhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCccccc--C--cccHHHH
Confidence 1110 0 0123334445567789999999999998766543 46999999975332110 0 1224579
Q ss_pred hHhhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCC-CCCCCChhhHHhhcCCeeEE-eccCh
Q 009851 300 LKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTD-ANDRYPEGFQERVAARGQMI-SWAPQ 377 (524)
Q Consensus 300 ~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~-~~~~l~~~~~~~~~~n~~v~-~~vpq 377 (524)
.+|||.+++++||||||||....+.+++.+++.+|+.++.+|+|++....+.. ....+|++|++++.++++++ +|+||
T Consensus 243 ~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ 322 (446)
T PLN00414 243 NHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQ 322 (446)
T ss_pred HHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCH
Confidence 99999999999999999999999999999999999999999999997642211 12468999999999999887 89999
Q ss_pred hhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 378 LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 378 ~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|+|+.+..++.+.+++++|+++++++|.|
T Consensus 323 ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~ 402 (446)
T PLN00414 323 PLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDK 402 (446)
T ss_pred HHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999654799999965322358999999999999976
Q ss_pred H-----HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 458 Q-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 458 ~-----~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
+ ++|++|+++++.+.+ +||++ ..++++++.+..
T Consensus 403 ~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 403 DSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALEN 440 (446)
T ss_pred ChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHH
Confidence 4 499999999999865 56634 448999888844
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.5e-63 Score=524.03 Aligned_cols=435 Identities=23% Similarity=0.322 Sum_probs=245.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCc---cc----
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDR---ND---- 77 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~---- 77 (524)
||+++|. ++||+.++..|+++|++|||+||++++.... .+... ...++++..++.+.+..+.. ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888884 7899999999999999999999999885422 12111 11366676666544332111 10
Q ss_pred ----------HHHHHHH---HHHhccHHH------HHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccch
Q 009851 78 ----------LGKLIEK---CLQVMPGKL------EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (524)
Q Consensus 78 ----------~~~~~~~---~~~~~~~~~------~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~ 138 (524)
....+.. +.+.....+ .++++.++. .++|++|+|.+.+|+..+|+.+|+|.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 1111111 111111111 122233333 589999999998899999999999998754332
Q ss_pred HHHHHHHhhcccccccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCC
Q 009851 139 AASVALVFRIPKLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEM 218 (524)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (524)
+.. .......|.|.+++|+|...+.+. +.+++++|+.+....
T Consensus 151 ~~~--------------~~~~~~~g~p~~psyvP~~~s~~~------------------------~~msf~~Ri~N~l~~ 192 (500)
T PF00201_consen 151 PMY--------------DLSSFSGGVPSPPSYVPSMFSDFS------------------------DRMSFWQRIKNFLFY 192 (500)
T ss_dssp SCS--------------CCTCCTSCCCTSTTSTTCBCCCSG------------------------TTSSSST--TTSHHH
T ss_pred ccc--------------hhhhhccCCCCChHHhccccccCC------------------------Cccchhhhhhhhhhh
Confidence 210 011122388999999999877544 334444444443210
Q ss_pred CcccccccccC---CCchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccC
Q 009851 219 NSRDCFWAHIG---DWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCE 295 (524)
Q Consensus 219 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~ 295 (524)
........... +....+.+.. .....+.+.+.+++++|+.+.++++ ++.+|++++||+++.+... +.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l 262 (500)
T PF00201_consen 193 LYFRFIFRYFFSPQDKLYKKYFGF-PFSFRELLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PL 262 (500)
T ss_dssp HHHHHHHHHGGGS-TTS-EEESS--GGGCHHHHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S------------TC
T ss_pred hhhccccccchhhHHHHHhhhccc-ccccHHHHHHHHHHhhhccccCcCC-cchhhcccccCcccccccc--------cc
Confidence 00000000000 0000000000 0001122345677899999999998 8999999999999876543 57
Q ss_pred cchhhHhhhcCCCCceEEEeecCCCC-CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEec
Q 009851 296 DSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW 374 (524)
Q Consensus 296 ~~~l~~~l~~~~~~~vV~vs~GS~~~-~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~ 374 (524)
+.++.+|++...++++|||||||... ++.+..+++++++++++.+|||++++. +. +.+++|+++++|
T Consensus 263 ~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~---------~~---~~l~~n~~~~~W 330 (500)
T PF00201_consen 263 PEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE---------PP---ENLPKNVLIVKW 330 (500)
T ss_dssp HHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS---------HG---CHHHTTEEEESS
T ss_pred ccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc---------cc---ccccceEEEecc
Confidence 78899999984458899999999864 444557889999999999999999653 11 135789999999
Q ss_pred cChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHH
Q 009851 375 APQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 454 (524)
Q Consensus 375 vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~ 454 (524)
+||.+||+||++++||||||+||++||+++|||||++|+++||+.||+++++. |+|+.++. ..+|+++|.++|+++
T Consensus 331 ~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 331 LPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREV 406 (500)
T ss_dssp --HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHH
T ss_pred ccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999987 679999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh-ccccccCCCCCCCCCCccceeeecccC
Q 009851 455 LGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK-KQVIHLAPNTPAMNTADPFWACFNLAI 524 (524)
Q Consensus 455 l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (524)
|+|++||+||+++++++++ ++..+++++++|+|++++ .+..||++...+| +|||||+|||
T Consensus 407 l~~~~y~~~a~~ls~~~~~------~p~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l----~~~~~~~lDv 467 (500)
T PF00201_consen 407 LENPSYKENAKRLSSLFRD------RPISPLERAVWWIEYVARHGGAPHLRSPARDL----SFYQYYLLDV 467 (500)
T ss_dssp HHSHHHHHHHHHHHHTTT-----------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCCCcccCChhhcC----CHHHHHHHHH
Confidence 9999999999999999999 789999999999999999 4566899988887 9999999997
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.3e-48 Score=408.17 Aligned_cols=453 Identities=28% Similarity=0.433 Sum_probs=305.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCC---CCCCCeEEEecCCCCCCCCCc--cc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKN---YLGEQIHLVSIPDGMEPWEDR--ND 77 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~--~~ 77 (524)
+.+++++++|++||++|+..||+.|+++||+||++++............... .....+.+...+++++..... ..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 4678888889999999999999999999999999999876544322100000 000111111212223222111 01
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcC-CceEEEccchHHHHHHHhhcccccccCC
Q 009851 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMN-VRGAVFWPSSAASVALVFRIPKLIDDGI 156 (524)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lg-iP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (524)
.......+...+...+++.+..+......++|++|+|.+..+...++...+ ++..++.+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------- 151 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLA------------- 151 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHh-------------
Confidence 112234445556666666454433322244999999998777777777665 888888777766544
Q ss_pred CCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhH
Q 009851 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (524)
Q Consensus 157 ~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 236 (524)
+|.|.+.+|+|........ ..+....+.+++.....................
T Consensus 152 -----~g~~~~~~~~p~~~~~~~~-----------------------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 203 (496)
T KOG1192|consen 152 -----LGLPSPLSYVPSPFSLSSG-----------------------DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKI 203 (496)
T ss_pred -----cCCcCcccccCcccCcccc-----------------------ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3667777788876542220 122222222222110000000000000000000
Q ss_pred HHHHH-------HHHHHhcccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCC
Q 009851 237 FFDLL-------ERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPS 309 (524)
Q Consensus 237 ~~~~~-------~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 309 (524)
..... ....+.+.+.++.++|+.+.++....+..+++++|||++...... +. ..+++|++..+..
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------~~--~~~~~wl~~~~~~ 275 (496)
T KOG1192|consen 204 SKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------KS--PLPLEWLDILDES 275 (496)
T ss_pred HHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCCCCCCceEECcEEecCccc------cc--cccHHHHHHHhhc
Confidence 11110 111234567779999999998885577789999999999884322 11 1344566554443
Q ss_pred --ceEEEeecCCC---CCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhh-hc
Q 009851 310 --SVVYVSFGSFT---ILDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRV-LN 382 (524)
Q Consensus 310 --~vV~vs~GS~~---~~~~~~~~~l~~al~~~-~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~l-L~ 382 (524)
++|||||||+. .++.++..+++.+++.+ +++|||+++.... ..+++++.++.++|+...+|+||.++ |+
T Consensus 276 ~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~----~~~~~~~~~~~~~nV~~~~W~PQ~~lll~ 351 (496)
T KOG1192|consen 276 RHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDS----IYFPEGLPNRGRGNVVLSKWAPQNDLLLD 351 (496)
T ss_pred cCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcc----hhhhhcCCCCCcCceEEecCCCcHHHhcC
Confidence 79999999997 79999999999999999 8899999986521 11233333223467888899999998 59
Q ss_pred CCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHH
Q 009851 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA 462 (524)
Q Consensus 383 ~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 462 (524)
|+++++||||||||||+|++++|||||++|+++||+.||+++++. |.|..+.+ ..++.+.+..++.+++.+++|++
T Consensus 352 H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~ 427 (496)
T KOG1192|consen 352 HPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKE 427 (496)
T ss_pred CCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHH
Confidence 999999999999999999999999999999999999999999997 66655554 44566559999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhhcc-ccccCCCCCCCCCCccceeeecccC
Q 009851 463 RALELKEKAMSSVREGGSSYKTFQNFLQWTMNALKKQ-VIHLAPNTPAMNTADPFWACFNLAI 524 (524)
Q Consensus 463 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (524)
+|+++++.+++ .+..+ +.+++|+|...+++ +.+++.. -.+.|.++|++|+
T Consensus 428 ~~~~l~~~~~~------~p~~~-~~~~~~~e~~~~~~~~~~l~~~-----~~~~~~~~~~~d~ 478 (496)
T KOG1192|consen 428 AAKRLSEILRD------QPISP-ELAVKWVEFVARHGGAKHLKEA-----AHLSFIEYGSLDV 478 (496)
T ss_pred HHHHHHHHHHc------CCCCH-HHHHHHHHHHHhcCCCcccCcc-----ccCChhhhhhhHH
Confidence 99999999998 78889 99999999988844 6677776 3448999999985
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.5e-42 Score=354.58 Aligned_cols=383 Identities=20% Similarity=0.253 Sum_probs=265.1
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCc-----ccHHHHHHH
Q 009851 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDR-----NDLGKLIEK 84 (524)
Q Consensus 10 ~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~ 84 (524)
.+|+.||++|++.||++|+++||+|+|++++.+.+.+++. |+.++.++......+.. .+....+..
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHHH
Confidence 5789999999999999999999999999999999999885 78888888544321100 233444444
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCCCCCCc
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGMIP 164 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (524)
+...+...+..+.+.+.+ .+||+||+|.+++++..+|+.+|||+|.+++.+.....
T Consensus 73 ~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------------------- 128 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE--------------------- 128 (392)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc---------------------
Confidence 444445555555555544 78999999998889999999999999988644321100
Q ss_pred cccCCCCCCCCCCccccccccchhhhheehhhccC--CCCCCccccccccCCCCCCCcccccccccCCCchhhHHHHHHH
Q 009851 165 CHVIPYFPPANFNFDACHSRSLLYATVIFFVLYST--SGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLE 242 (524)
Q Consensus 165 ~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (524)
.+...|+.....+ ....+..+ ..+......++.-.|++.. ..
T Consensus 129 --~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~r~~~gl~~~-------------~~--------- 172 (392)
T TIGR01426 129 --FEEMVSPAGEGSA------------EEGAIAERGLAEYVARLSALLEEHGITTP-------------PV--------- 172 (392)
T ss_pred --ccccccccchhhh------------hhhccccchhHHHHHHHHHHHHHhCCCCC-------------CH---------
Confidence 0000111100000 00000000 0000000000000000000 00
Q ss_pred HHHHhcccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCCCC
Q 009851 243 RNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTIL 322 (524)
Q Consensus 243 ~~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~ 322 (524)
... .....+..+..+.+.|+++...++++++++||+....... ..|....+++++||+|+||+...
T Consensus 173 ~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~ 238 (392)
T TIGR01426 173 EFL-AAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKED-------------GSWERPGDGRPVVLISLGTVFNN 238 (392)
T ss_pred HHH-hcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCcccc-------------CCCCCCCCCCCEEEEecCccCCC
Confidence 000 0123344677888888887567788999999987643211 12454445577999999998666
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEecCChhhHHHHH
Q 009851 323 DQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGV 402 (524)
Q Consensus 323 ~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal 402 (524)
..+.++.+++++++.+.+++|..+.+.. .+.+ +..++|+.+.+|+||.++|+++++ +|||||+||++||+
T Consensus 239 ~~~~~~~~~~al~~~~~~~i~~~g~~~~-------~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal 308 (392)
T TIGR01426 239 QPSFYRTCVEAFRDLDWHVVLSVGRGVD-------PADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEAL 308 (392)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEECCCCC-------hhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHH
Confidence 6678888999999999999998865411 1111 124678999999999999977665 99999999999999
Q ss_pred HcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcH
Q 009851 403 SNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSY 482 (524)
Q Consensus 403 ~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~ 482 (524)
++|+|+|++|...||..||+++++ +|+|+.+.. ..+++++|.++|.++|.|++|+++++++++.+++ .+|
T Consensus 309 ~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~---~~~--- 378 (392)
T TIGR01426 309 FNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIRE---AGG--- 378 (392)
T ss_pred HhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---cCC---
Confidence 999999999999999999999999 599998875 5689999999999999999999999999999997 355
Q ss_pred HHHHHHHHHHHHHhh
Q 009851 483 KTFQNFLQWTMNALK 497 (524)
Q Consensus 483 ~~~~~~~~~i~~~~~ 497 (524)
.+++++.|++.++
T Consensus 379 --~~~aa~~i~~~~~ 391 (392)
T TIGR01426 379 --ARRAADEIEGFLA 391 (392)
T ss_pred --HHHHHHHHHHhhc
Confidence 6777777777653
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=5.9e-43 Score=359.19 Aligned_cols=386 Identities=16% Similarity=0.129 Sum_probs=261.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCC---C------
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE---D------ 74 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~---~------ 74 (524)
+||+|++.|+.||++|++.||++|++|||+|+|++++.+...+++. |++|+.+++...... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 4899999999999999999999999999999999999988888764 889988875432210 0
Q ss_pred ---cccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccc
Q 009851 75 ---RNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (524)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 151 (524)
..........+...+...++++++.+.. .++|+||+|.+.+++..+|+++|||++.+++++.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-------- 140 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS-------- 140 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc--------
Confidence 0112223344444556666666666554 79999999998889999999999999998876543211
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCccccccccchhhhhee-hhhccCCCCCCccccccccCCCCCCCcccccccccCC
Q 009851 152 IDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIF-FVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGD 230 (524)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 230 (524)
+.|+.. ++ .+...+.. ................+...|+++...
T Consensus 141 ------------------~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~---------- 184 (401)
T cd03784 141 ------------------AFPPPL-------GR-ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSL---------- 184 (401)
T ss_pred ------------------cCCCcc-------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----------
Confidence 111100 00 00000000 000000000000000011111111000
Q ss_pred CchhhHHHHHHHHHHHhcccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCc
Q 009851 231 WTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSS 310 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 310 (524)
.....+..+....+.+.++..+++++..++|......... ...+.++..|++.. ++
T Consensus 185 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~--~~ 240 (401)
T cd03784 185 ----------------LDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYN------GPPPPELWLFLAAG--RP 240 (401)
T ss_pred ----------------cccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCC------CCCCHHHHHHHhCC--CC
Confidence 0001223444455555555467777888886333222211 23456677888764 55
Q ss_pred eEEEeecCCCCCC-HHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceE
Q 009851 311 VVYVSFGSFTILD-QVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACF 389 (524)
Q Consensus 311 vV~vs~GS~~~~~-~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ 389 (524)
+|||++||..... .+.+..++++++..+.++||+.+.... . . ...++|+++.+|+||.++|.| +++|
T Consensus 241 ~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~----~--~----~~~~~~v~~~~~~p~~~ll~~--~d~~ 308 (401)
T cd03784 241 PVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL----G--A----EDLPDNVRVVDFVPHDWLLPR--CAAV 308 (401)
T ss_pred cEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc----c--c----cCCCCceEEeCCCCHHHHhhh--hhee
Confidence 9999999986644 456777999999889999999876511 1 1 234688999999999999966 5559
Q ss_pred EecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009851 390 LSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKE 469 (524)
Q Consensus 390 ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~ 469 (524)
|||||+||++||+++|||+|++|+..||+.||+++++ +|+|+.++. ..++.++|.++|.+++++ .++++++++++
T Consensus 309 I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~ 383 (401)
T cd03784 309 VHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLR 383 (401)
T ss_pred eecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 599999876 448999999999999975 56677888888
Q ss_pred HHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 470 KAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 470 ~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
.+++ ++| .+++++.|+.
T Consensus 384 ~~~~---~~g-----~~~~~~~ie~ 400 (401)
T cd03784 384 RIRE---EDG-----VPSAADVIER 400 (401)
T ss_pred HHHh---ccC-----HHHHHHHHhh
Confidence 8766 366 6666666654
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=322.22 Aligned_cols=395 Identities=19% Similarity=0.213 Sum_probs=250.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCC---CcccHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE---DRNDLG 79 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~ 79 (524)
++||+|+..|+.||++|++.||++|.++||+|++++++.+.+.++++ ++.|..++....... ...+..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 47899999999999999999999999999999999999999999987 667766664322111 111111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHh-hcccccccCCCC
Q 009851 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVF-RIPKLIDDGIID 158 (524)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (524)
+.+............++++.+.+ ..+|+++.|...+.+ .+++..++|++.............. +.+.+...+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLP 147 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccccc
Confidence 11111223333344555555555 789999999777655 8899999999886655433211111 000000000000
Q ss_pred CCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHH
Q 009851 159 SHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFF 238 (524)
Q Consensus 159 ~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 238 (524)
.+..-+|... .++...+-+| .+.+.. ......
T Consensus 148 -------~~~~~~~~~~-------~~~~~~~~~~-------------------~~~~~~---------------r~~~~~ 179 (406)
T COG1819 148 -------IPLYPLPPRL-------VRPLIFARSW-------------------LPKLVV---------------RRNLGL 179 (406)
T ss_pred -------ccccccChhh-------ccccccchhh-------------------hhhhhh---------------hhhccc
Confidence 0000000000 0000000000 000000 000000
Q ss_pred HHHH-HHHHhcc-cccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEee
Q 009851 239 DLLE-RNTRAMI-AVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSF 316 (524)
Q Consensus 239 ~~~~-~~~~~~~-~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~ 316 (524)
.... +..+... .....+.-....+.+. ...+....++||+....... ...|.. .++++||+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~------------~~~~~~--~d~~~vyvsl 244 (406)
T COG1819 180 ELGLPNIRRLFASGPLLEIAYTDVLFPPG-DRLPFIGPYIGPLLGEAANE------------LPYWIP--ADRPIVYVSL 244 (406)
T ss_pred cccccchHHHhcCCCCccccccccccCCC-CCCCCCcCcccccccccccc------------Ccchhc--CCCCeEEEEc
Confidence 0000 0001111 1111111111111110 23344566777777655432 112322 2366999999
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEecCChh
Q 009851 317 GSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWN 396 (524)
Q Consensus 317 GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ItHgG~g 396 (524)
||.... .+.++.++++++.++.++|...+.. .. ... ..++|+++.+|+||.++|.++++ ||||||+|
T Consensus 245 Gt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~-~~~--------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~g 311 (406)
T COG1819 245 GTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD-TLV--------NVPDNVIVADYVPQLELLPRADA--VIHHGGAG 311 (406)
T ss_pred CCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc-ccc--------cCCCceEEecCCCHHHHhhhcCE--EEecCCcc
Confidence 998766 8889999999999999999888552 00 111 24678889999999999955555 99999999
Q ss_pred hHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhh
Q 009851 397 STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVR 476 (524)
Q Consensus 397 s~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~ 476 (524)
||+|||++|||+|++|...||+.||.|+++ +|+|+.+.. ..++++.|+++|+++|+|+.|+++++++++.++..
T Consensus 312 tt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~-- 385 (406)
T COG1819 312 TTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE-- 385 (406)
T ss_pred hHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc--
Confidence 999999999999999999999999999999 699999986 56999999999999999999999999999999983
Q ss_pred cCCCcHHHHHHHHHHHHHHhhc
Q 009851 477 EGGSSYKTFQNFLQWTMNALKK 498 (524)
Q Consensus 477 ~~g~~~~~~~~~~~~i~~~~~~ 498 (524)
+| ...+.+.|+...++
T Consensus 386 -~g-----~~~~a~~le~~~~~ 401 (406)
T COG1819 386 -DG-----PAKAADLLEEFARE 401 (406)
T ss_pred -cc-----HHHHHHHHHHHHhc
Confidence 66 66677777776553
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.92 E-value=3e-23 Score=207.31 Aligned_cols=317 Identities=17% Similarity=0.170 Sum_probs=197.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChh--hHHHhhhcCCCCCCCeEEEecCCC-CCCCCCcccHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK--RVVESLQGKNYLGEQIHLVSIPDG-MEPWEDRNDLGK 80 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~--~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 80 (524)
.||+|...|+.||++|.++||++|.++||+|+|++.....+ .+.+ .++.++.++.. +.. ....+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~---------~g~~~~~~~~~~l~~----~~~~~ 68 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK---------ENIPYYSISSGKLRR----YFDLK 68 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc---------cCCcEEEEeccCcCC----CchHH
Confidence 36899999999999999999999999999999999765432 1211 36777777632 211 11122
Q ss_pred HHHHHHHhccHHHH--HHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCC
Q 009851 81 LIEKCLQVMPGKLE--ELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (524)
Q Consensus 81 ~~~~~~~~~~~~~~--~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (524)
.+..........++ .++++ .+||+||...-+. .+..+|..+|+|++..-....
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~----------------- 125 (352)
T PRK12446 69 NIKDPFLVMKGVMDAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT----------------- 125 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC-----------------
Confidence 23333333332222 33444 8999999877544 478899999999987432110
Q ss_pred CCCCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhH
Q 009851 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (524)
Q Consensus 157 ~~~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 236 (524)
+++..
T Consensus 126 --------------------------------------------------------~g~~n------------------- 130 (352)
T PRK12446 126 --------------------------------------------------------PGLAN------------------- 130 (352)
T ss_pred --------------------------------------------------------ccHHH-------------------
Confidence 00000
Q ss_pred HHHHHHHHHHhcccccEEEEcCCcccccccccCC-CcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEe
Q 009851 237 FFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVS 315 (524)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs 315 (524)
+.+ .+.++.++ .++++-. ...+ .+++++|+-..+.... ...+...+.+.-.+++++|+|.
T Consensus 131 --r~~------~~~a~~v~-~~f~~~~---~~~~~~k~~~tG~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~ 191 (352)
T PRK12446 131 --KIA------LRFASKIF-VTFEEAA---KHLPKEKVIYTGSPVREEVLK-------GNREKGLAFLGFSRKKPVITIM 191 (352)
T ss_pred --HHH------HHhhCEEE-EEccchh---hhCCCCCeEEECCcCCccccc-------ccchHHHHhcCCCCCCcEEEEE
Confidence 000 01122232 2232211 1111 3678888655443211 0111111223323346699999
Q ss_pred ecCCCCCCH-HHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEecc-C-hhhhhcCCCcceEEec
Q 009851 316 FGSFTILDQ-VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA-P-QLRVLNHPSIACFLSH 392 (524)
Q Consensus 316 ~GS~~~~~~-~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~v-p-q~~lL~~~~v~~~ItH 392 (524)
.||...... +.+.+++..+.. +.+++|..+.+. +.+... . ..+..+..|+ + -.++++++++ +|||
T Consensus 192 GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~-------~~~~~~-~-~~~~~~~~f~~~~m~~~~~~adl--vIsr 259 (352)
T PRK12446 192 GGSLGAKKINETVREALPELLL-KYQIVHLCGKGN-------LDDSLQ-N-KEGYRQFEYVHGELPDILAITDF--VISR 259 (352)
T ss_pred CCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch-------HHHHHh-h-cCCcEEecchhhhHHHHHHhCCE--EEEC
Confidence 999865444 234444444432 478888887541 111111 1 1344566777 4 3378977776 9999
Q ss_pred CChhhHHHHHHcCCceeccCcc-----cchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH-HHHHHHHH
Q 009851 393 CGWNSTMEGVSNGIPFLCWPYF-----GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-DFKARALE 466 (524)
Q Consensus 393 gG~gs~~Eal~~GvP~v~~P~~-----~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~-~~r~~a~~ 466 (524)
||.+|+.|++++|+|+|++|+. .||..||+.+++ .|+|..+.. ..++++.|.++|.++++|+ .|++++++
T Consensus 260 ~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 260 AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYE---EDVTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999985 489999999999 499988864 5689999999999999886 56555544
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.9e-22 Score=200.57 Aligned_cols=305 Identities=16% Similarity=0.193 Sum_probs=190.3
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCC-CCcccHHHH
Q 009851 4 PRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLGKL 81 (524)
Q Consensus 4 ~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 81 (524)
+||+|...+ +.||+..++.||++| |||+|+|++.....+.+.. .+....+++-.... ....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 588877666 779999999999999 6999999999866554432 23444444221111 111122122
Q ss_pred HHHHH---HhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCC
Q 009851 82 IEKCL---QVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIID 158 (524)
Q Consensus 82 ~~~~~---~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (524)
..... ......++++++.++. .+||+||+| +.+.+..+|+..|||++.+.........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~~--------------- 129 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLHP--------------- 129 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcccc---------------
Confidence 21111 1233445555555555 899999999 4455778899999999998766432100
Q ss_pred CCCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHH
Q 009851 159 SHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFF 238 (524)
Q Consensus 159 ~~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 238 (524)
... .+.. ... .
T Consensus 130 --------------~~~--------------------------~~~~-------------------------~~~----~ 140 (318)
T PF13528_consen 130 --------------NFW--------------------------LPWD-------------------------QDF----G 140 (318)
T ss_pred --------------cCC--------------------------cchh-------------------------hhH----H
Confidence 000 0000 000 0
Q ss_pred HHHHHHHHh--cccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEee
Q 009851 239 DLLERNTRA--MIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSF 316 (524)
Q Consensus 239 ~~~~~~~~~--~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~ 316 (524)
....+.... ...++..+.-++. . + .....++.++||+..+.... ... .+++.|+|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~--~-~~~~~~~~~~~p~~~~~~~~----------------~~~-~~~~~iLv~~ 199 (318)
T PF13528_consen 141 RLIERYIDRYHFPPADRRLALSFY-P--P-LPPFFRVPFVGPIIRPEIRE----------------LPP-EDEPKILVYF 199 (318)
T ss_pred HHHHHhhhhccCCcccceecCCcc-c--c-ccccccccccCchhcccccc----------------cCC-CCCCEEEEEe
Confidence 001111111 2333444433333 1 1 22233567788887654422 111 1245899999
Q ss_pred cCCCCCCHHHHHHHHHHHhcCC-CCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEecc--ChhhhhcCCCcceEEecC
Q 009851 317 GSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA--PQLRVLNHPSIACFLSHC 393 (524)
Q Consensus 317 GS~~~~~~~~~~~l~~al~~~~-~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~v--pq~~lL~~~~v~~~ItHg 393 (524)
|..... .++++++..+ .++++. +.. . .+...+|+.+.++. .-.++|+.+++ +||||
T Consensus 200 gg~~~~------~~~~~l~~~~~~~~~v~-g~~------~------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~ 258 (318)
T PF13528_consen 200 GGGGPG------DLIEALKALPDYQFIVF-GPN------A------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKG 258 (318)
T ss_pred CCCcHH------HHHHHHHhCCCCeEEEE-cCC------c------ccccCCCEEEeecChHHHHHHHHhCCE--EEECC
Confidence 975322 6667776666 566555 433 0 01126888888876 44479955555 99999
Q ss_pred ChhhHHHHHHcCCceeccCc--ccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHH
Q 009851 394 GWNSTMEGVSNGIPFLCWPY--FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 454 (524)
Q Consensus 394 G~gs~~Eal~~GvP~v~~P~--~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~ 454 (524)
|.||++|++++|+|+|++|. ..||..||+++++ +|+|..++. ..++++.|.++|.++
T Consensus 259 G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 259 GYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEccc---ccCCHHHHHHHHhcC
Confidence 99999999999999999999 7899999999999 699999975 679999999998753
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=5.5e-21 Score=189.74 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=90.3
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCCC-CEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccC--hhhhhcCCC
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP--QLRVLNHPS 385 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~-~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vp--q~~lL~~~~ 385 (524)
++.|++.+|+.. .+.+++++++.+. .++ +... +...+ ..++|+.+.+|.| ..++| +.
T Consensus 188 ~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i--~~~~------~~~~~----~~~~~v~~~~~~~~~~~~~l--~~ 247 (321)
T TIGR00661 188 EDYILVYIGFEY------RYKILELLGKIANVKFV--CYSY------EVAKN----SYNENVEIRRITTDNFKELI--KN 247 (321)
T ss_pred CCcEEEECCcCC------HHHHHHHHHhCCCeEEE--EeCC------CCCcc----ccCCCEEEEECChHHHHHHH--Hh
Confidence 347888888742 2345667765553 444 2221 01111 2357888999998 34677 55
Q ss_pred cceEEecCChhhHHHHHHcCCceeccCccc--chhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHH
Q 009851 386 IACFLSHCGWNSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 386 v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r 461 (524)
++++|||||.+|++|++++|+|++++|... ||..||+.+++ .|+|+.++. .++ ++.+++.++++|+.|+
T Consensus 248 ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 248 AELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEY---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred CCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcCh---hhH---HHHHHHHhcccccccc
Confidence 556999999999999999999999999965 89999999999 499999865 223 6777887888887764
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=8.9e-19 Score=173.07 Aligned_cols=339 Identities=16% Similarity=0.204 Sum_probs=202.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (524)
+|++...++.||+.|.++|+++|.++|+ +|.++.+....+..... ..++.++.++.+-...... ...+.
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~~~~~~---~~~~~ 71 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGLRRKGS---LKLLK 71 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccccccCc---HHHHH
Confidence 6778888899999999999999999999 57777555433322111 1377887777544333111 11222
Q ss_pred HHHHhccH--HHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCC
Q 009851 84 KCLQVMPG--KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (524)
Q Consensus 84 ~~~~~~~~--~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..+..+.. ..+.++++ .+||+||.-.-++ .+..+|..+|||.+..-.-.
T Consensus 72 ~~~~~~~~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~--------------------- 124 (357)
T COG0707 72 APFKLLKGVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA--------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC---------------------
Confidence 22223222 23456666 8999999855444 67888999999998832110
Q ss_pred CCCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHH
Q 009851 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFD 239 (524)
Q Consensus 160 ~~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 239 (524)
++|+...
T Consensus 125 ----------------------------------------------------~~G~ank--------------------- 131 (357)
T COG0707 125 ----------------------------------------------------VPGLANK--------------------- 131 (357)
T ss_pred ----------------------------------------------------CcchhHH---------------------
Confidence 1111100
Q ss_pred HHHHHHHhcccccEEEEcCCcccccccccCCCcccccc-cccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecC
Q 009851 240 LLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGS 318 (524)
Q Consensus 240 ~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VG-p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS 318 (524)
.. .+.++.+. .+++..+. .....+++.+| |+..+-... .... .. .+...++++|+|.-||
T Consensus 132 ~~------~~~a~~V~-~~f~~~~~--~~~~~~~~~tG~Pvr~~~~~~--------~~~~-~~-~~~~~~~~~ilV~GGS 192 (357)
T COG0707 132 IL------SKFAKKVA-SAFPKLEA--GVKPENVVVTGIPVRPEFEEL--------PAAE-VR-KDGRLDKKTILVTGGS 192 (357)
T ss_pred Hh------HHhhceee-eccccccc--cCCCCceEEecCcccHHhhcc--------chhh-hh-hhccCCCcEEEEECCc
Confidence 00 01112222 23332111 11123577777 443321110 0000 01 1111136699999998
Q ss_pred CCCCCH-HHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh-cCC-eeEEeccChh-hhhcCCCcceEEecCC
Q 009851 319 FTILDQ-VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV-AAR-GQMISWAPQL-RVLNHPSIACFLSHCG 394 (524)
Q Consensus 319 ~~~~~~-~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~-~~n-~~v~~~vpq~-~lL~~~~v~~~ItHgG 394 (524)
.....- +.+......+.+ +..+++..+.+ .+ +...... ..+ +.+..|..+. ++++-+++ +||++|
T Consensus 193 ~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~-------~~-~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaG 261 (357)
T COG0707 193 QGAKALNDLVPEALAKLAN-RIQVIHQTGKN-------DL-EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAG 261 (357)
T ss_pred chhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-------hH-HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCc
Confidence 754332 223333434433 46777776554 11 1222111 233 6677888877 78966666 999999
Q ss_pred hhhHHHHHHcCCceeccCcc----cchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009851 395 WNSTMEGVSNGIPFLCWPYF----GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEK 470 (524)
Q Consensus 395 ~gs~~Eal~~GvP~v~~P~~----~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~ 470 (524)
.+|+.|+++.|+|+|.+|.- .||..||..++++ |.|..++- ..+|.+++.+.|.+++.+ .++.+++++.
T Consensus 262 a~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~---~~lt~~~l~~~i~~l~~~---~~~l~~m~~~ 334 (357)
T COG0707 262 ALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQ---SELTPEKLAELILRLLSN---PEKLKAMAEN 334 (357)
T ss_pred ccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecc---ccCCHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 99999999999999999974 3899999999996 99999975 569999999999999987 4455555555
Q ss_pred HHhhhhcCCCcHHHHHHHHHHHHHH
Q 009851 471 AMSSVREGGSSYKTFQNFLQWTMNA 495 (524)
Q Consensus 471 ~~~~~~~~g~~~~~~~~~~~~i~~~ 495 (524)
.++. ...++.+++++.++..
T Consensus 335 a~~~-----~~p~aa~~i~~~~~~~ 354 (357)
T COG0707 335 AKKL-----GKPDAAERIADLLLAL 354 (357)
T ss_pred HHhc-----CCCCHHHHHHHHHHHH
Confidence 5553 1233355555555443
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=1.6e-17 Score=167.98 Aligned_cols=116 Identities=13% Similarity=0.178 Sum_probs=91.4
Q ss_pred CeeEEeccC-hhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCc----ccchhhhHHhhccccceeeEEecCCCCCC
Q 009851 368 RGQMISWAP-QLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGLKFDRDEGGII 442 (524)
Q Consensus 368 n~~v~~~vp-q~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~G~~~~~~~~~~~ 442 (524)
++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|..++. .++
T Consensus 236 ~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~---~~~ 309 (357)
T PRK00726 236 NAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ---SDL 309 (357)
T ss_pred cEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc---ccC
Confidence 467789984 4589965555 9999999999999999999999997 36899999999885 99999876 457
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 443 TREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 443 t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
++++|.++|.++++|++++++..+-+.+..+ +++ .+++++.+...++
T Consensus 310 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~ 356 (357)
T PRK00726 310 TPEKLAEKLLELLSDPERLEAMAEAARALGK---PDA-----AERLADLIEELAR 356 (357)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC---cCH-----HHHHHHHHHHHhh
Confidence 8999999999999998887665555444322 233 6777777766654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.75 E-value=3.9e-16 Score=157.34 Aligned_cols=323 Identities=15% Similarity=0.131 Sum_probs=183.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
||++...+..||....+.||+.|.++||+|++++....... ... ...++++..++-.-... ....+.+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGGLRR---KGSLKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecCcCC---CChHHHHHH
Confidence 58888989999999999999999999999999987542211 000 01256666665321111 111121111
Q ss_pred HHHhcc--HHHHHHHHHHhcCCCCCccEEEECCC--chhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCCC
Q 009851 85 CLQVMP--GKLEELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (524)
Q Consensus 85 ~~~~~~--~~~~~ll~~l~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (524)
...... ..+..++++ .+||+|++... ...+..+|...|+|++..... .
T Consensus 71 ~~~~~~~~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~--------------------- 122 (350)
T cd03785 71 PFKLLKGVLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A--------------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C---------------------
Confidence 111111 123344444 79999998753 334567788889998752110 0
Q ss_pred CCCccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHHH
Q 009851 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (524)
Q Consensus 161 ~~~~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (524)
++ + .. .+.
T Consensus 123 -----------------------------------------~~----------~--------~~-------------~~~ 130 (350)
T cd03785 123 -----------------------------------------VP----------G--------LA-------------NRL 130 (350)
T ss_pred -----------------------------------------Cc----------c--------HH-------------HHH
Confidence 00 0 00 000
Q ss_pred HHHHHHhcccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCC
Q 009851 241 LERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFT 320 (524)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~ 320 (524)
....++.+++.+....+. . ...++.++|......... ..+. .+.+...+++.+|++..|+..
T Consensus 131 ------~~~~~~~vi~~s~~~~~~--~-~~~~~~~i~n~v~~~~~~--------~~~~-~~~~~~~~~~~~i~~~~g~~~ 192 (350)
T cd03785 131 ------LARFADRVALSFPETAKY--F-PKDKAVVTGNPVREEILA--------LDRE-RARLGLRPGKPTLLVFGGSQG 192 (350)
T ss_pred ------HHHhhCEEEEcchhhhhc--C-CCCcEEEECCCCchHHhh--------hhhh-HHhcCCCCCCeEEEEECCcHh
Confidence 011245555544433332 0 123566676543322110 0000 112222222445556555542
Q ss_pred CCCH-HHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEecc-ChhhhhcCCCcceEEecCChhhH
Q 009851 321 ILDQ-VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA-PQLRVLNHPSIACFLSHCGWNST 398 (524)
Q Consensus 321 ~~~~-~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~v-pq~~lL~~~~v~~~ItHgG~gs~ 398 (524)
.... +.+...+..+.+.+..+++.++.+ ..+.+.+...+ ..+|+.+.+|+ ...++|+.+++ +|+++|.+++
T Consensus 193 ~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~~~~l~~~~~~-~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~ 265 (350)
T cd03785 193 ARAINEAVPEALAELLRKRLQVIHQTGKG----DLEEVKKAYEE-LGVNYEVFPFIDDMAAAYAAADL--VISRAGASTV 265 (350)
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEcCCc----cHHHHHHHHhc-cCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHH
Confidence 2111 112223334433344556666543 11111111111 24689999998 44589966665 9999999999
Q ss_pred HHHHHcCCceeccCc----ccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 009851 399 MEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 466 (524)
Q Consensus 399 ~Eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~ 466 (524)
.||+++|+|+|+.|. ..+|..|+..+.+. |.|..++. ...+.++|.++|.+++.|++.+++..+
T Consensus 266 ~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~ 333 (350)
T cd03785 266 AELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQ---EELTPERLAAALLELLSDPERLKAMAE 333 (350)
T ss_pred HHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999986 35788999999884 99999875 336899999999999988765544333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.67 E-value=2e-14 Score=144.77 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred ChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcc---cchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHH
Q 009851 376 PQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF---GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVD 452 (524)
Q Consensus 376 pq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~---~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~ 452 (524)
+-.++|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+++ .|.|..++. .+.+.++|.++|.
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~---~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQ---KELLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEec---ccCCHHHHHHHHH
Confidence 45688966666 99999988999999999999999873 478889988988 499988865 4467999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHh
Q 009851 453 QVLGNQDFKARALELKEKAMS 473 (524)
Q Consensus 453 ~~l~~~~~r~~a~~l~~~~~~ 473 (524)
+++.|++.+++ +++..++
T Consensus 317 ~ll~~~~~~~~---~~~~~~~ 334 (348)
T TIGR01133 317 KLLLDPANLEA---MAEAARK 334 (348)
T ss_pred HHHcCHHHHHH---HHHHHHh
Confidence 99998766554 4444444
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.65 E-value=5.2e-15 Score=150.14 Aligned_cols=166 Identities=11% Similarity=-0.017 Sum_probs=106.0
Q ss_pred CCceEEEeecCCCCCCHHHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeeEEeccChhhh
Q 009851 308 PSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQLRV 380 (524)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~~~~~~~~~~l~~~~~~~~--~~n~~v~~~vpq~~l 380 (524)
++++|.+.-||....-......+++++... +.++++........ ..+ +.+.+.. ..++.+..+ ...++
T Consensus 190 ~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~---~~~-~~~~~~~~~~~~v~~~~~-~~~~~ 264 (385)
T TIGR00215 190 NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRR---LQF-EQIKAEYGPDLQLHLIDG-DARKA 264 (385)
T ss_pred CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhH---HHH-HHHHHHhCCCCcEEEECc-hHHHH
Confidence 355777777776432133444555554322 34565544332100 000 1111122 123333332 33468
Q ss_pred hcCCCcceEEecCChhhHHHHHHcCCceecc----Cccc---------chhhhHHhhccccceeeEEecCCCCCCCHHHH
Q 009851 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCW----PYFG---------DQFLNERYICDFWKVGLKFDRDEGGIITREEI 447 (524)
Q Consensus 381 L~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~----P~~~---------DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l 447 (524)
++.+++ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+..+ ++...+.- ...|++.|
T Consensus 265 l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q---~~~~~~~l 337 (385)
T TIGR00215 265 MFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQ---EECTPHPL 337 (385)
T ss_pred HHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcC---CCCCHHHH
Confidence 866666 9999999988 999999999999 8752 388899999885 88877653 56899999
Q ss_pred HHHHHHHhcCH----HHHHHHHHHHHHHHhhhhcCCCcHHHH
Q 009851 448 KNKVDQVLGNQ----DFKARALELKEKAMSSVREGGSSYKTF 485 (524)
Q Consensus 448 ~~ai~~~l~~~----~~r~~a~~l~~~~~~~~~~~g~~~~~~ 485 (524)
.+.+.++|.|+ +++++.++--+.+++...++|.+.+..
T Consensus 338 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a 379 (385)
T TIGR00215 338 AIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAA 379 (385)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999998 777777777677777666666544433
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=3e-13 Score=137.92 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=108.2
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhc-CCCCEEEEEcCCCCCCCCCCCChhhH---HhhcCCeeEEeccChh-hhhcC
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLEL-CKRPFLWVVRPDITTDANDRYPEGFQ---ERVAARGQMISWAPQL-RVLNH 383 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~-~~~~~iw~~~~~~~~~~~~~l~~~~~---~~~~~n~~v~~~vpq~-~lL~~ 383 (524)
+++|++..|+.... ..+..+++++.. .+.++++..+.+ ..+.+.+. +..++|+.+.+|+++. ++++.
T Consensus 202 ~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~ 273 (380)
T PRK13609 202 KKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFRV 273 (380)
T ss_pred CcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh
Confidence 45777777776432 234567777754 356676665533 11112222 1223588899999875 79977
Q ss_pred CCcceEEecCChhhHHHHHHcCCceecc-CcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHH
Q 009851 384 PSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA 462 (524)
Q Consensus 384 ~~v~~~ItHgG~gs~~Eal~~GvP~v~~-P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 462 (524)
+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+. |.|+.. -+.+++.++|.++++|++.++
T Consensus 274 aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i~~ll~~~~~~~ 343 (380)
T PRK13609 274 TSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKTEALLQDDMKLL 343 (380)
T ss_pred ccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHHHHHHCCHHHHH
Confidence 776 99999988999999999999985 6667778899888774 888765 368999999999999886654
Q ss_pred HHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 463 RALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 463 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
+.+ +..++.. .. .+.+.+++.+.+..
T Consensus 344 ~m~---~~~~~~~-~~----~s~~~i~~~i~~~~ 369 (380)
T PRK13609 344 QMK---EAMKSLY-LP----EPADHIVDDILAEN 369 (380)
T ss_pred HHH---HHHHHhC-CC----chHHHHHHHHHHhh
Confidence 433 3333320 11 23556666665544
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.60 E-value=1.9e-13 Score=132.37 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=75.5
Q ss_pred ceEEEeecCCCCCCHHHHHHHHHHHhcC--CCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeeEEeccChh-hhhcCC
Q 009851 310 SVVYVSFGSFTILDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL-RVLNHP 384 (524)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~l~~al~~~--~~~~iw~~~~~~~~~~~~~l~~~~~~~--~~~n~~v~~~vpq~-~lL~~~ 384 (524)
+.|+++||..-. ......+++++... +.++.++++... ...+.+.+. ...|+.+..++++. ++|+.+
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN------PNLDELKKFAKEYPNIILFIDVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHC
Confidence 479999996432 22445567777553 456777776541 122223221 24688889999987 899666
Q ss_pred CcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHh
Q 009851 385 SIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY 423 (524)
Q Consensus 385 ~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~r 423 (524)
++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 243 Dl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 243 DL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 66 999999 9999999999999999999999999975
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.57 E-value=1.8e-13 Score=129.08 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=124.2
Q ss_pred ccccEEEEcCCcccccccccC------CCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCCCC
Q 009851 249 IAVNFHFCNSTYELESEAFTT------FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTIL 322 (524)
Q Consensus 249 ~~~~~~l~ns~~~le~~~~~~------~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~ 322 (524)
+..|.+++-..|.|-.+...+ ..++.++|.+ .++-...+ .+.. .. +++--|+||-|.- ..
T Consensus 166 r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v-q~~~~~~~----~p~~-------~~-pE~~~Ilvs~GGG-~d 231 (400)
T COG4671 166 RFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV-QRSLPHLP----LPPH-------EA-PEGFDILVSVGGG-AD 231 (400)
T ss_pred HhheEEEEecCccccChhhcCCccHhhhhheeEeEEe-eccCcCCC----CCCc-------CC-CccceEEEecCCC-hh
Confidence 345778888887765442222 2379999988 22211111 1111 11 2344788988862 33
Q ss_pred CHHHHHHHHHHHhc-CCCCEEEEEcCCCCCCCCCCCChhhHHhh----c--CCeeEEeccChh-hhhcCCCcceEEecCC
Q 009851 323 DQVQFQELALGLEL-CKRPFLWVVRPDITTDANDRYPEGFQERV----A--ARGQMISWAPQL-RVLNHPSIACFLSHCG 394 (524)
Q Consensus 323 ~~~~~~~l~~al~~-~~~~~iw~~~~~~~~~~~~~l~~~~~~~~----~--~n~~v~~~vpq~-~lL~~~~v~~~ItHgG 394 (524)
..+.....++|... .+.+-.|.+-.+ ...|...+.++ + +++.|..|-.+. .+++-++. +|+-||
T Consensus 232 G~eLi~~~l~A~~~l~~l~~~~~ivtG------P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~G 303 (400)
T COG4671 232 GAELIETALAAAQLLAGLNHKWLIVTG------PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGG 303 (400)
T ss_pred hHHHHHHHHHHhhhCCCCCcceEEEeC------CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeeccc
Confidence 44555555555532 333324444333 34555433332 3 778888988777 78855555 999999
Q ss_pred hhhHHHHHHcCCceeccCccc---chhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH
Q 009851 395 WNSTMEGVSNGIPFLCWPYFG---DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 395 ~gs~~Eal~~GvP~v~~P~~~---DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~ 458 (524)
.||++|-|.+|+|.+++|... ||-.-|+|+++ ||+.-.+-+ .++|+..++++|...+.-+
T Consensus 304 YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 304 YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 999999999999999999974 99999999999 899987776 6799999999999999734
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.48 E-value=1.8e-11 Score=124.90 Aligned_cols=145 Identities=13% Similarity=0.240 Sum_probs=100.1
Q ss_pred CCceEEEeecCCCCCCHHHHHHHHHHH-hc-CCCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeeEEeccChh-hhhc
Q 009851 308 PSSVVYVSFGSFTILDQVQFQELALGL-EL-CKRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL-RVLN 382 (524)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~l~~al-~~-~~~~~iw~~~~~~~~~~~~~l~~~~~~~--~~~n~~v~~~vpq~-~lL~ 382 (524)
++++|++..|+... ...+..+++++ +. .+.++++..+.+ ..+-+.+.+. ..+|+.+.+|+++. ++++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 35588888887652 23445555554 22 345666665433 1111222222 23578888999766 7897
Q ss_pred CCCcceEEecCChhhHHHHHHcCCceecc-CcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHH
Q 009851 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 383 ~~~v~~~ItHgG~gs~~Eal~~GvP~v~~-P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r 461 (524)
.+++ +|+..|..|+.||+++|+|+|+. |.-+.|..|+..+.+. |+|+... +.+++.++|.++++|++.+
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~~~~~ 342 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNGNEQL 342 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcCHHHH
Confidence 7776 99998888999999999999998 7767778999999885 9998762 6899999999999887543
Q ss_pred HHHHHHHHHHHh
Q 009851 462 ARALELKEKAMS 473 (524)
Q Consensus 462 ~~a~~l~~~~~~ 473 (524)
+++++..++
T Consensus 343 ---~~m~~~~~~ 351 (391)
T PRK13608 343 ---TNMISTMEQ 351 (391)
T ss_pred ---HHHHHHHHH
Confidence 344444444
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.45 E-value=1e-11 Score=126.67 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=68.4
Q ss_pred hhhhcCCCcceEEecCChhhHHHHHHcCCceeccCccc--------chhhh-----HHhhccccceeeEEecCCCCCCCH
Q 009851 378 LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFG--------DQFLN-----ERYICDFWKVGLKFDRDEGGIITR 444 (524)
Q Consensus 378 ~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~--------DQ~~n-----a~rv~~~lG~G~~~~~~~~~~~t~ 444 (524)
..+++.+++ +|+-+|.+++ |++++|+|+|+.|... .|..| +..+.+. +++..+.- ...++
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~ 328 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEATP 328 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCCH
Confidence 478866776 9999998887 9999999999885432 12122 2233332 33333321 45789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 445 EEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 445 ~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
++|.++|.++++|++.+++..+-.+.+++.. ..| +.+++++.|.+.+.
T Consensus 329 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~----a~~~~~~~i~~~~~ 376 (380)
T PRK00025 329 EKLARALLPLLADGARRQALLEGFTELHQQL-RCG----ADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCC----HHHHHHHHHHHHhh
Confidence 9999999999999976665444443333322 123 36666666666543
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.39 E-value=1.7e-14 Score=129.12 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=94.1
Q ss_pred eEEEeecCCCCCCHH-HHHHHHHHHhc--CCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccC-hhhhhcCCCc
Q 009851 311 VVYVSFGSFTILDQV-QFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP-QLRVLNHPSI 386 (524)
Q Consensus 311 vV~vs~GS~~~~~~~-~~~~l~~al~~--~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vp-q~~lL~~~~v 386 (524)
+|+|+.||.....-. .+..+...+.. .+.++++..+..... ..... .+....|+.+.+|++ ..++++.+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~----~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE----ELKIK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH----HHCCC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH----HHHHH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 488999976321111 11123333322 257788887655111 11111 111226888999999 6689977776
Q ss_pred ceEEecCChhhHHHHHHcCCceeccCccc----chhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHH
Q 009851 387 ACFLSHCGWNSTMEGVSNGIPFLCWPYFG----DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 460 (524)
Q Consensus 387 ~~~ItHgG~gs~~Eal~~GvP~v~~P~~~----DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~ 460 (524)
+|||||.||++|++.+|+|+|++|... +|..||..+++. |.|..+.. ...+.+.|.++|.+++.++..
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHCHCCCHH-
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999999998 999999999995 99988875 456789999999999988754
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.35 E-value=2e-10 Score=117.02 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCeeEEeccChh-hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchh-hhHHhhccccceeeEEecCCCCCCCH
Q 009851 367 ARGQMISWAPQL-RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF-LNERYICDFWKVGLKFDRDEGGIITR 444 (524)
Q Consensus 367 ~n~~v~~~vpq~-~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~-~na~rv~~~lG~G~~~~~~~~~~~t~ 444 (524)
.++.+.+|+++. ++++.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCH
Confidence 467888999876 78966666 999999999999999999999998776675 788888874 999765 378
Q ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Q 009851 445 EEIKNKVDQVLGN-QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNA 495 (524)
Q Consensus 445 ~~l~~ai~~~l~~-~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 495 (524)
++|.++|.+++.| ++.+ ++|++..++.. ...+.+.+++.+.+.
T Consensus 335 ~~la~~i~~ll~~~~~~~---~~m~~~~~~~~-----~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 335 KEIARIVAEWFGDKSDEL---EAMSENALKLA-----RPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHHcCCHHHH---HHHHHHHHHhc-----CCchHHHHHHHHHHH
Confidence 9999999999987 5433 34455554431 122245555555543
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=2.9e-09 Score=107.14 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=88.7
Q ss_pred ceEEEeecCCCC-CCHHHHHHHHHHHhc-CCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhh---hhcCC
Q 009851 310 SVVYVSFGSFTI-LDQVQFQELALGLEL-CKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLR---VLNHP 384 (524)
Q Consensus 310 ~vV~vs~GS~~~-~~~~~~~~l~~al~~-~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~---lL~~~ 384 (524)
+.+++..|+... ...+.+-++++.+.. .+..+++. +.+. ..+.+. ....|+.+.+++|+.+ +++.+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~-------~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~ 267 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGP-------ARARLE-ARYPNVHFLGFLDGEELAAAYASA 267 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCc-------hHHHHh-ccCCcEEEEeccCHHHHHHHHHhC
Confidence 467777787532 233444444444432 23455544 3321 011111 2457889999999774 78666
Q ss_pred CcceEEecCC----hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHH
Q 009851 385 SIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 460 (524)
Q Consensus 385 ~v~~~ItHgG----~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~ 460 (524)
++ +|+.+. .+++.||+++|+|+|+.+..+ +...+++. +.|..++. -+.+++.++|.+++.|++.
T Consensus 268 d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 268 DV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEAFAAALAALLADPEL 335 (364)
T ss_pred CE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHHHHHHHHHHHcCHHH
Confidence 66 886654 478999999999999877554 55666664 88887743 5788899999999998876
Q ss_pred HHHHHHHH
Q 009851 461 KARALELK 468 (524)
Q Consensus 461 r~~a~~l~ 468 (524)
+++..+-+
T Consensus 336 ~~~~~~~~ 343 (364)
T cd03814 336 RRRMAARA 343 (364)
T ss_pred HHHHHHHH
Confidence 55444333
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=6e-12 Score=108.85 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=82.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (524)
|+|++.|+.||++|++.||++|++|||+|++++++.+.+.+++. |++|..++... ...........+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS-RLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG-GGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc-CcCcccchhhhhhhH
Confidence 78999999999999999999999999999999999999999775 89999998651 000000011111111
Q ss_pred HHh---ccHHHHHHHHHHh------cCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHH
Q 009851 86 LQV---MPGKLEELIEEIN------SREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAA 140 (524)
Q Consensus 86 ~~~---~~~~~~~ll~~l~------~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~ 140 (524)
.+. ... +.+.++... ..+....|+++.+.....+..+|+++|||++.....+..
T Consensus 71 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEE-AMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHH-HHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhH-HHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111 111 112222211 111246788888888788999999999999998777654
No 45
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.23 E-value=1.8e-09 Score=109.90 Aligned_cols=328 Identities=14% Similarity=0.080 Sum_probs=176.7
Q ss_pred ccCHHHHHHHHHHHHh--CCCEEE---EEeCCcChh--hHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHH
Q 009851 14 QGHVIPLLEFSQCLAK--HGFRVT---FVNTDYNHK--RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCL 86 (524)
Q Consensus 14 ~GH~~p~l~LA~~L~~--rGH~Vt---~~~~~~~~~--~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (524)
.|-=.-.+.||++|.+ .|++|. +++...-.+ .+.. .+ .+..+|.+- -...+..+.+..+.
T Consensus 7 hged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~---------~g-~~~~~~sgg---~~~~~~~~~~~~~~ 73 (396)
T TIGR03492 7 HGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI---------IG-PTKELPSGG---FSYQSLRGLLRDLR 73 (396)
T ss_pred chHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce---------eC-CCCCCCCCC---ccCCCHHHHHHHHH
Confidence 3334556889999998 699999 888764322 1111 12 344444221 11234444444444
Q ss_pred H-hccHHHH--HHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHHHHHHHhhcccccccCCCCCCCCC
Q 009851 87 Q-VMPGKLE--ELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGMI 163 (524)
Q Consensus 87 ~-~~~~~~~--~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (524)
. .....++ .+++++. .+||+||+-.=+. ...+|...|+|++.+.+.-..... .++
T Consensus 74 ~gl~~~~~~~~~~~~~~~----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~---------~~~-------- 131 (396)
T TIGR03492 74 AGLVGLTLGQWRALRKWA----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW---------ESG-------- 131 (396)
T ss_pred hhHHHHHHHHHHHHHHHh----hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee---------cCC--------
Confidence 4 3333333 2333321 3899999765545 888899999999987654221100 000
Q ss_pred ccccCCCCCCCCCCccccccccchhhhheehhhccCCCCCCccccccccCCCCCCCcccccccccCCCchhhHHHHHHHH
Q 009851 164 PCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLER 243 (524)
Q Consensus 164 ~~~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 243 (524)
| ++ ...+++.+.+|.... || +
T Consensus 132 --------~----------------------------~~-~~~~~~~~~~G~~~~-----p~-------------e---- 152 (396)
T TIGR03492 132 --------P----------------------------RR-SPSDEYHRLEGSLYL-----PW-------------E---- 152 (396)
T ss_pred --------C----------------------------CC-ccchhhhccCCCccC-----HH-------------H----
Confidence 0 01 112223333333211 10 0
Q ss_pred HHHh-cccccEEEEcCCcccccccccCCCcccccccccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCCCC
Q 009851 244 NTRA-MIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTIL 322 (524)
Q Consensus 244 ~~~~-~~~~~~~l~ns~~~le~~~~~~~~~v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~ 322 (524)
.... .+.++.+++.+...-+.- ....-++.+||--..+.-.. .... -++. ++++|.+--||....
T Consensus 153 ~n~l~~~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnPv~d~l~~--------~~~~---~l~~--~~~~lllLpGSR~ae 218 (396)
T TIGR03492 153 RWLMRSRRCLAVFVRDRLTARDL-RRQGVRASYLGNPMMDGLEP--------PERK---PLLT--GRFRIALLPGSRPPE 218 (396)
T ss_pred HHHhhchhhCEEeCCCHHHHHHH-HHCCCeEEEeCcCHHhcCcc--------cccc---ccCC--CCCEEEEECCCCHHH
Confidence 0111 244555665543322222 12223788999443332211 0000 1222 234777877876333
Q ss_pred CHHHHHHHHHHHhc----CCCCEEEEEcCCCCCCCCCCCChhhHHhh-------------------cCCeeEEeccCh-h
Q 009851 323 DQVQFQELALGLEL----CKRPFLWVVRPDITTDANDRYPEGFQERV-------------------AARGQMISWAPQ-L 378 (524)
Q Consensus 323 ~~~~~~~l~~al~~----~~~~~iw~~~~~~~~~~~~~l~~~~~~~~-------------------~~n~~v~~~vpq-~ 378 (524)
-.+.+..++++++. .+..|++.+.++.. .+.+.+.. .+++.+..+..+ .
T Consensus 219 ~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (396)
T TIGR03492 219 AYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-------LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFA 291 (396)
T ss_pred HHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-------HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHH
Confidence 33344455555544 36678887743310 01111111 123445555433 4
Q ss_pred hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccc--c-ceeeEEecCCCCCCCHHHHHHHHHHHh
Q 009851 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF--W-KVGLKFDRDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 379 ~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~--l-G~G~~~~~~~~~~~t~~~l~~ai~~~l 455 (524)
++++.+++ +|+-+|..| .|+...|+|+|++|.-..|. |+...++. + |-++.+. ..+.+.|.+++.+++
T Consensus 292 ~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~-----~~~~~~l~~~l~~ll 362 (396)
T TIGR03492 292 EILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA-----SKNPEQAAQVVRQLL 362 (396)
T ss_pred HHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC-----CCCHHHHHHHHHHHH
Confidence 78977777 999999766 99999999999999877776 88765541 1 5555553 245699999999999
Q ss_pred cCHHHHHHHH
Q 009851 456 GNQDFKARAL 465 (524)
Q Consensus 456 ~~~~~r~~a~ 465 (524)
.|++.+++..
T Consensus 363 ~d~~~~~~~~ 372 (396)
T TIGR03492 363 ADPELLERCR 372 (396)
T ss_pred cCHHHHHHHH
Confidence 9987665444
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.21 E-value=5.3e-08 Score=99.85 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=62.0
Q ss_pred cCCeeEEeccChhh---hhcCCCcceEEec-CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQLR---VLNHPSIACFLSH-CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~~~~v~~~ItH-gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+++.+.+++|+.+ +++.+++-.+.+. .| ..++.||+++|+|+|+.. .......+.+. ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC----
Confidence 36788889999874 6666777222222 23 248999999999999854 34456666653 57777754
Q ss_pred CCCHHHHHHHHHHHhcCHHHHH
Q 009851 441 IITREEIKNKVDQVLGNQDFKA 462 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~~~r~ 462 (524)
-+.+++.++|.++++|++.++
T Consensus 351 -~d~~~la~~i~~ll~~~~~~~ 371 (396)
T cd03818 351 -FDPDALAAAVIELLDDPARRA 371 (396)
T ss_pred -CCHHHHHHHHHHHHhCHHHHH
Confidence 479999999999999875443
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.20 E-value=9.4e-09 Score=104.03 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=83.0
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCCCCChhhH----HhhcCCeeEEeccChh---h
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQ----ERVAARGQMISWAPQL---R 379 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~~-~~~~iw~~~~~~~~~~~~~l~~~~~----~~~~~n~~v~~~vpq~---~ 379 (524)
++.+++..|+... ...+.+.+.++.+... +.++++ ++.+. ..+.+. ....+|+.+.+++|+. +
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP-------EKEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc-------cHHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 4477777887643 2334444444444333 444443 33321 111222 2234788889999876 4
Q ss_pred hhcCCCcceEEecCC---------hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHH
Q 009851 380 VLNHPSIACFLSHCG---------WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNK 450 (524)
Q Consensus 380 lL~~~~v~~~ItHgG---------~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~a 450 (524)
+++.+++ +|.... -+++.||+++|+|+|+.+..+.+. .+.+ .+.|..++. -+.+++.++
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~~~~~-----~~~~~l~~~ 358 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGLVVPP-----GDPEALAAA 358 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcceEeCC-----CCHHHHHHH
Confidence 6766666 654322 334799999999999988766433 3334 266777643 478999999
Q ss_pred HHHHhcCHHHHHHH
Q 009851 451 VDQVLGNQDFKARA 464 (524)
Q Consensus 451 i~~~l~~~~~r~~a 464 (524)
|.+++.|++.+++.
T Consensus 359 i~~~~~~~~~~~~~ 372 (394)
T cd03794 359 ILELLDDPEERAEM 372 (394)
T ss_pred HHHHHhChHHHHHH
Confidence 99999887654443
No 48
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.20 E-value=4.8e-08 Score=102.30 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=83.4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeeEEeccChh---hhhcCC
Q 009851 310 SVVYVSFGSFTILDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQL---RVLNHP 384 (524)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~l~~al~~~-~~~~iw~~~~~~~~~~~~~l~~~~~~~~-~~n~~v~~~vpq~---~lL~~~ 384 (524)
..+++..|+.. .......+++++++. +.+++++ +.+ ...+.+.+.. ..|+.+.+++|+. ++++.+
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 35666778753 233455677777654 4555544 333 1112222222 2578888999865 478677
Q ss_pred CcceEEecCC----hhhHHHHHHcCCceeccCcccchhhhHHhhcc---ccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 385 SIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICD---FWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 385 ~v~~~ItHgG----~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~---~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
++ ||.-.. ..++.||+++|+|+|+....+ ....+.+ . +.|..++. -+.+++.++|.++++|
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLAD 400 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhC
Confidence 77 774332 457899999999999866432 3333433 4 77888754 4789999999999998
Q ss_pred HHHHHH
Q 009851 458 QDFKAR 463 (524)
Q Consensus 458 ~~~r~~ 463 (524)
++.+++
T Consensus 401 ~~~~~~ 406 (465)
T PLN02871 401 PELRER 406 (465)
T ss_pred HHHHHH
Confidence 764433
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.19 E-value=1.7e-08 Score=101.30 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=83.5
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChh---hhhcCC
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL---RVLNHP 384 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~---~lL~~~ 384 (524)
+..+++..|+... ...+.+.+.+..+...+.++++. +.+. .............++.+.+++|+. ++++.+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~-G~~~-----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 263 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIV-GNGL-----ELEEESYELEGDPRVEFLGAYPQEEIDDFYAEI 263 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEE-cCch-----hhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhC
Confidence 3467777887632 22333333333333235555544 3321 000000000234788899999866 468777
Q ss_pred CcceEEe----cCC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHH
Q 009851 385 SIACFLS----HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 385 ~v~~~It----HgG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~ 459 (524)
++ +|. ..| ..++.||+++|+|+|+.+. ......+.+. +.|..++. -+.+++.++|.++++|+.
T Consensus 264 d~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 264 DV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-----GDAEDLAAALERLIDDPD 331 (359)
T ss_pred CE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-----CCHHHHHHHHHHHHhChH
Confidence 76 663 233 4479999999999998654 3456666663 67888754 468999999999999876
Q ss_pred HHHHH
Q 009851 460 FKARA 464 (524)
Q Consensus 460 ~r~~a 464 (524)
.++..
T Consensus 332 ~~~~~ 336 (359)
T cd03823 332 LLERL 336 (359)
T ss_pred HHHHH
Confidence 54443
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.12 E-value=1.9e-07 Score=96.32 Aligned_cols=120 Identities=18% Similarity=0.105 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHH
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (524)
++.||++++....|+-..+..+|++|+++||+|++++.......-+.. ...++.++.++..... .......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~~~~---~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPPPQR---LNKLPFL 72 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCCccc---cccchHH
Confidence 457888888887888888899999999999999999875422111100 1247888887642200 1111222
Q ss_pred HHH---HHHhccHHHHHHHHHHhcCCCCCccEEEECC-Cch----hHHHHHHHcCCceEEEcc
Q 009851 82 IEK---CLQVMPGKLEELIEEINSREDEKIDCFIADG-NIG----WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 82 ~~~---~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~-~~~----~~~~~A~~lgiP~i~~~~ 136 (524)
+.. ........+..++.. .++|+|++.. ... .+..++...|+|+|..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~------~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKL------RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 222 212222233334433 6899999743 221 234456667999887544
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=3.7e-09 Score=97.28 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=106.4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeeEEeccC-hhhhhcCCCc
Q 009851 310 SVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAP-QLRVLNHPSI 386 (524)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~--~~n~~v~~~vp-q~~lL~~~~v 386 (524)
--|+|++|. ..+.....+++..+.+.++.+-.+++.. ..-.+++.++. .+|+.+..... -..|++.+++
T Consensus 159 r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 159 RDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred heEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 369999994 3344466678888887776666666533 22334444333 36666664444 4478966666
Q ss_pred ceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 009851 387 ACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 466 (524)
Q Consensus 387 ~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~ 466 (524)
.|+-||. |+.|++.-|+|.+++|+...|-.-|...+. +|+-..++. .++.+....-+..+.+|...|.+.-.
T Consensus 231 --aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~----~l~~~~~~~~~~~i~~d~~~rk~l~~ 302 (318)
T COG3980 231 --AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGY----HLKDLAKDYEILQIQKDYARRKNLSF 302 (318)
T ss_pred --heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccC----CCchHHHHHHHHHhhhCHHHhhhhhh
Confidence 9998885 899999999999999999999999999987 588877753 37788888888889888887777665
Q ss_pred HHHHHH
Q 009851 467 LKEKAM 472 (524)
Q Consensus 467 l~~~~~ 472 (524)
-++.+-
T Consensus 303 ~~~~i~ 308 (318)
T COG3980 303 GSKLIG 308 (318)
T ss_pred ccceee
Confidence 555443
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.11 E-value=7.3e-08 Score=98.60 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=63.0
Q ss_pred cCCeeEEeccChhh---hhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQLR---VLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
..|+.+.+++|+.+ +++.+++ +++. |-..++.||+++|+|+|+-+.. .....+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 36788899999875 5866666 7643 2246899999999999876643 355567663 78888754
Q ss_pred CCCCCHHHHHHHHHHHhcCHHHH
Q 009851 439 GGIITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~r 461 (524)
-+.+++.++|.+++.|++.+
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~ 372 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALR 372 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHH
Confidence 47999999999999887543
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.09 E-value=2.3e-07 Score=92.63 Aligned_cols=140 Identities=13% Similarity=0.145 Sum_probs=82.4
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhc--CCCCEEEEEcCCCCCCCCCCCChh-hH-HhhcCCeeEEeccChh-hhhc
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEG-FQ-ERVAARGQMISWAPQL-RVLN 382 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~--~~~~~iw~~~~~~~~~~~~~l~~~-~~-~~~~~n~~v~~~vpq~-~lL~ 382 (524)
++++++..|+... ...+.+-+.++.+.+ .+.++++. +.+.... ..... .. .....++.+.++..+. .+++
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 262 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDEEN---PAAILEIEKLGLEGRVEFLGFRDDVPELLA 262 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCcch---hhHHHHHHhcCCcceEEEeeccccHHHHHH
Confidence 4478888887632 233334444444432 33444444 3321100 00000 11 1124677777775444 6887
Q ss_pred CCCcceEEecCC----hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH
Q 009851 383 HPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 383 ~~~v~~~ItHgG----~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~ 458 (524)
.+++ +|.-+. .+++.||+++|+|+|+-+..+ ....+.+. +.|..++. -+.+++.++|.+++.|+
T Consensus 263 ~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~~-----~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 263 AADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVPP-----GDAEALADAIERLIEDP 330 (359)
T ss_pred hccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEECC-----CCHHHHHHHHHHHHhCH
Confidence 7776 665432 578999999999999865443 44555553 77877753 46899999999999887
Q ss_pred HHHHHH
Q 009851 459 DFKARA 464 (524)
Q Consensus 459 ~~r~~a 464 (524)
+.+++.
T Consensus 331 ~~~~~~ 336 (359)
T cd03808 331 ELRARM 336 (359)
T ss_pred HHHHHH
Confidence 654433
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.08 E-value=2e-07 Score=93.29 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=65.7
Q ss_pred hcCCeeEEeccChh---hhhcCCCcceEEe----cCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC
Q 009851 365 VAARGQMISWAPQL---RVLNHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (524)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~~~~v~~~It----HgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~ 437 (524)
...++.+.+++++. +++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+. +.|..++.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 45788899999755 57866666 663 3556799999999999998665 3455666653 77877754
Q ss_pred CCCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009851 438 EGGIITREEIKNKVDQVLGNQDFKARA 464 (524)
Q Consensus 438 ~~~~~t~~~l~~ai~~~l~~~~~r~~a 464 (524)
.+.+++.++|.+++.|++.++..
T Consensus 326 ----~~~~~l~~~i~~~~~~~~~~~~~ 348 (374)
T cd03801 326 ----GDPEALAEAILRLLDDPELRRRL 348 (374)
T ss_pred ----CCHHHHHHHHHHHHcChHHHHHH
Confidence 46899999999999988654433
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.07 E-value=1.6e-07 Score=94.54 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=81.5
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhc--CCCCEEEEEcCCCCCCCCCCCChhhHH-----hhcCCeeEEeccChh--
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQL-- 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~--~~~~~iw~~~~~~~~~~~~~l~~~~~~-----~~~~n~~v~~~vpq~-- 378 (524)
++.+++..|+... ...+.+-.++..+.. .+.++++.-++. ..+.+.+ ...+|+.+.+++|+.
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 272 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--------EREELEELARELGLADRVIFTGFVPREEL 272 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHHcCCCCcEEEeccCChHHH
Confidence 3466777787632 233333444444433 344555443221 1112222 224788889999987
Q ss_pred -hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHH
Q 009851 379 -RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (524)
Q Consensus 379 -~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~ 453 (524)
.++..+++ +|.. ++.+++.||+++|+|+|+.+. ...+..+.+. +.|..++. -+. ++.++|.+
T Consensus 273 ~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-----~~~-~~~~~i~~ 339 (374)
T cd03817 273 PDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-----GDE-ALAEALLR 339 (374)
T ss_pred HHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-----CCH-HHHHHHHH
Confidence 46767777 6633 334789999999999998654 3456666663 78888754 122 99999999
Q ss_pred HhcCHHHH
Q 009851 454 VLGNQDFK 461 (524)
Q Consensus 454 ~l~~~~~r 461 (524)
+++|++.+
T Consensus 340 l~~~~~~~ 347 (374)
T cd03817 340 LLQDPELR 347 (374)
T ss_pred HHhChHHH
Confidence 99887643
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.06 E-value=1.6e-07 Score=95.26 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEe----cCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~It----HgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+++.+.++.++. ++++.+++ +|. -|...++.||+++|+|+|+... ...+..+.+. ..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC----
Confidence 4578888877654 67866666 662 2334599999999999998543 4456666663 67777643
Q ss_pred CCCHHHHHHHHHHHhcCHHHHHH
Q 009851 441 IITREEIKNKVDQVLGNQDFKAR 463 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~~~r~~ 463 (524)
-+.+++.++|.+++.|++.+.+
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~ 342 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQE 342 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHH
Confidence 4789999999999988754333
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=3.4e-07 Score=94.48 Aligned_cols=166 Identities=7% Similarity=0.074 Sum_probs=95.6
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcC----CCCEEEEEcCCCCCCCCCCCChhhHHh----hcCCeeEEeccChh--
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELC----KRPFLWVVRPDITTDANDRYPEGFQER----VAARGQMISWAPQL-- 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~----~~~~iw~~~~~~~~~~~~~l~~~~~~~----~~~n~~v~~~vpq~-- 378 (524)
+..+++..|+.. ....+..+++|++.. +.+++ .+|.+ ...+.+.+. ..+|+.+.+++|+.
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g-------~~~~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQG-------GGKARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCC-------hhHHHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 336677778763 333455566665433 23444 33333 112222221 12578888999876
Q ss_pred -hhhcCCCcceEEecCCh------hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHH
Q 009851 379 -RVLNHPSIACFLSHCGW------NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKV 451 (524)
Q Consensus 379 -~lL~~~~v~~~ItHgG~------gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai 451 (524)
++++.+++-.+.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++. -+.++++++|
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~-----~d~~~la~~i 367 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP-----ESVEALVAAI 367 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC-----CCHHHHHHHH
Confidence 47877787555444332 2468999999999987654311 11222 2 56777744 4789999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 452 DQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 452 ~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
.++++|+..+++ +++..++.+.+.-+.....+.+.+.+.++++
T Consensus 368 ~~l~~~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 368 AALARQALLRPK---LGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHhCHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 999988754433 3333333332334555666666666665543
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.02 E-value=2.2e-07 Score=96.19 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=71.4
Q ss_pred eeEEeccChh-hhhcCCCcceEEec-----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCC
Q 009851 369 GQMISWAPQL-RVLNHPSIACFLSH-----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGII 442 (524)
Q Consensus 369 ~~v~~~vpq~-~lL~~~~v~~~ItH-----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~ 442 (524)
+.+.+...+. .+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+.+. |.++.. -
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~ 373 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------E 373 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------C
Confidence 3344433333 67766665 3321 34446999999999999999988888887777653 766654 3
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 443 TREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 443 t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
+.++|.++|.++++|++.+++..+-+...-. +. ....++.++.+...+
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~---~~---~~~~~~~~~~l~~~l 421 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLK---QN---QGALQRTLQLLEPYL 421 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hC---ccHHHHHHHHHHHhc
Confidence 6899999999999988665444333333222 11 233566666655543
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.98 E-value=1.2e-06 Score=90.05 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=63.1
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEe---cCC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~It---HgG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
.+|+.+.+++|+. ++|+.+++ +|. +-| ..++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC--
Confidence 3678888999875 57877776 663 223 35899999999999986543 344556563 67877753
Q ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009851 439 GGIITREEIKNKVDQVLGNQDFKARA 464 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~r~~a 464 (524)
-+.+++.++|.++++|+..+++.
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~ 375 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRM 375 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHH
Confidence 47899999999999887554433
No 60
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.98 E-value=3.9e-08 Score=99.69 Aligned_cols=136 Identities=12% Similarity=0.125 Sum_probs=83.9
Q ss_pred ceEEEeecCCCCCCHHHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeeEEeccChh---h
Q 009851 310 SVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQL---R 379 (524)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~~~~~~~~~~l~~~~~~~~--~~n~~v~~~vpq~---~ 379 (524)
..|+++.+-.... .+.+..+++++.+. +.++++....+ ......+.+.. .+|+.+.+.+++. .
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN------PVVREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC------hHHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 3666655422111 13466677776443 45666554322 01111122222 3578888766654 5
Q ss_pred hhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHH
Q 009851 380 VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 380 lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~ 459 (524)
++++.++ +|+-.|.. +.||+++|+|+|+.+..++++. +.+. |.+..+. -+.++|.+++.++++|++
T Consensus 271 ~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 271 LAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDPD 336 (365)
T ss_pred HHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhChH
Confidence 6766665 99987644 7999999999999876666552 2232 7776553 378999999999999887
Q ss_pred HHHHHHH
Q 009851 460 FKARALE 466 (524)
Q Consensus 460 ~r~~a~~ 466 (524)
.+++..+
T Consensus 337 ~~~~~~~ 343 (365)
T TIGR00236 337 EYKKMSN 343 (365)
T ss_pred HHHHhhh
Confidence 7665543
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.97 E-value=1.2e-06 Score=88.44 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=61.0
Q ss_pred hcCCeeEEeccC-hh---hhhcCCCcceEEecC----ChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEec
Q 009851 365 VAARGQMISWAP-QL---RVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (524)
Q Consensus 365 ~~~n~~v~~~vp-q~---~lL~~~~v~~~ItHg----G~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~ 436 (524)
...++.+.+|++ +. .+++.+++ ++.-. ..+++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC
Confidence 456778889998 43 56866666 77643 357999999999999976543 333445552 57777643
Q ss_pred CCCCCCCHHHHHHHHHHHhcCHHHH
Q 009851 437 DEGGIITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 437 ~~~~~~t~~~l~~ai~~~l~~~~~r 461 (524)
.+.+++.++|.+++.|++.+
T Consensus 315 -----~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 315 -----GDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred -----CCHHHHHHHHHHHHhCHHHH
Confidence 57899999999999887633
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.95 E-value=8.6e-07 Score=89.10 Aligned_cols=135 Identities=10% Similarity=0.095 Sum_probs=84.8
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCC-CCEEEEEcCCCCCCCCCCCChhhHH-----hhcCCeeEEeccChh---h
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQL---R 379 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~-~~~iw~~~~~~~~~~~~~l~~~~~~-----~~~~n~~v~~~vpq~---~ 379 (524)
+..+++..|+.. .......+++++++.. .++++.-++. ..+.+.+ ...+|+.+.+|+|+. .
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 336777788753 2334556777776666 4444443211 1122221 235789999999985 5
Q ss_pred hhcCCCcceEEe---cCCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHh
Q 009851 380 VLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 380 lL~~~~v~~~It---HgG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l 455 (524)
+++.+++-++-+ +.|. .++.||+++|+|+|+....+....... +. +.|...+. -+.+++.++|.+++
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-----~d~~~~~~~i~~l~ 330 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-----GDPAALAEAIRRLL 330 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----CCHHHHHHHHHHHH
Confidence 776666633333 2343 479999999999998765554433322 23 67777643 47999999999999
Q ss_pred cCHHHHH
Q 009851 456 GNQDFKA 462 (524)
Q Consensus 456 ~~~~~r~ 462 (524)
+|++.++
T Consensus 331 ~~~~~~~ 337 (357)
T cd03795 331 EDPELRE 337 (357)
T ss_pred HCHHHHH
Confidence 9885443
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.93 E-value=1.2e-06 Score=87.06 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=62.7
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEecC----ChhhHHHHHHcCCceeccCcccchhhhHHhhccccc-eeeEEecCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEG 439 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItHg----G~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG-~G~~~~~~~~ 439 (524)
..++.+.++.... .++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+. .+.+. | .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC---
Confidence 3566666663333 68866666 66554 2578999999999999866544332 23332 4 7777743
Q ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009851 440 GIITREEIKNKVDQVLGNQDFKARALELKEK 470 (524)
Q Consensus 440 ~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~ 470 (524)
-+.+++.++|.++++|++.+++..+-+..
T Consensus 304 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~ 332 (348)
T cd03820 304 --GDVEALAEALLRLMEDEELRKRMGANARE 332 (348)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 46899999999999998766655544433
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.90 E-value=2.4e-06 Score=85.59 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=62.2
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEE----ecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFL----SHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~I----tHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
.+|+.+.+++|+. .++..+++ +| +-|..+++.||+++|+|+|+-+.. .....+.+. +.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC--
Confidence 4788899999976 56766666 55 235567899999999999976543 345556663 66777743
Q ss_pred CCCCCHHHHHHHHHHHhcCHHH
Q 009851 439 GGIITREEIKNKVDQVLGNQDF 460 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~ 460 (524)
-+.+++.++|.++++++..
T Consensus 329 ---~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 329 ---GDPEALAEAILRLLADPWL 347 (377)
T ss_pred ---CCHHHHHHHHHHHhcCcHH
Confidence 5799999999999998763
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.82 E-value=4.7e-06 Score=85.23 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=59.7
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEec---CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~ItH---gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
.+|+.+.+++|+. .+++.+++ ++.. -| ..++.||+++|+|+|+.-.. .....+.+. +.|..++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC---
Confidence 4788999999987 56777776 5532 12 35789999999999986443 344455553 5676663
Q ss_pred CCCCCHHHHHHHHHHHhcCHHHH
Q 009851 439 GGIITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~r 461 (524)
.+.+++.++|.++++|++.+
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~ 368 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLA 368 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHH
Confidence 27899999999999887543
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.79 E-value=7e-06 Score=82.45 Aligned_cols=84 Identities=12% Similarity=0.037 Sum_probs=59.1
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEecC----ChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~ItHg----G~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
.+|+.+.+++++. .+++.+++ +|.-. -.+++.||+++|+|+|+.+.. .....+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 4788889999965 46767666 55432 256899999999999986543 34444443 66666532
Q ss_pred CCCCCHHHHHHHHHHHhcCHHHHHH
Q 009851 439 GGIITREEIKNKVDQVLGNQDFKAR 463 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~r~~ 463 (524)
+.+++.++|.++++|++.+++
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~ 351 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKA 351 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHH
Confidence 459999999999998744433
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.78 E-value=1e-05 Score=83.03 Aligned_cols=115 Identities=16% Similarity=0.062 Sum_probs=73.8
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEe---cCCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~It---HgG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
.+++.+.+|+|+. .+++.+++ +|. +-|. .++.||+++|+|+|+-+..+ ....+.+ |.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 4678888999875 57766666 654 2243 39999999999999876643 3344444 4443332
Q ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 439 GGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
-+.+++.++|.+++.+..-+. .+.+..++.+.+.-+.....++.++..++.+.
T Consensus 318 ---~~~~~l~~~l~~~l~~~~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 318 ---PDVESIVRKLEEAISILRTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred ---CCHHHHHHHHHHHHhChhhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 278999999999997642111 22333334444455667777777777766653
No 68
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.77 E-value=1e-05 Score=89.45 Aligned_cols=182 Identities=9% Similarity=0.103 Sum_probs=99.5
Q ss_pred hhhHhhhcCCCCceEEEeecCCCCCCHHHHHHHHHHHhcCC-----CCEEEEEcCCCCCCCCC----CCChhh---HHh-
Q 009851 298 NCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCK-----RPFLWVVRPDITTDAND----RYPEGF---QER- 364 (524)
Q Consensus 298 ~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~-----~~~iw~~~~~~~~~~~~----~l~~~~---~~~- 364 (524)
++..|+... +.+++++.|... +.+....+++|+.... ..+.+.++.+....... ..-..+ .++
T Consensus 469 ~l~r~~~~p--dkpvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 469 EIMRFFTNP--RKPMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHhhcccC--CCcEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 455666543 335666677643 3344556677774432 23444454331000000 000111 111
Q ss_pred -hcCCeeEEeccChhh---hhcCCC--cceEEec---CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEE
Q 009851 365 -VAARGQMISWAPQLR---VLNHPS--IACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKF 434 (524)
Q Consensus 365 -~~~n~~v~~~vpq~~---lL~~~~--v~~~ItH---gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~ 434 (524)
+.++|.+.+++++.+ ++..++ .++||.- =| -.++.||+++|+|+|+-...+ ....+... ..|+.+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLV 619 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLV 619 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEE
Confidence 246777888888874 454331 1236653 23 358999999999999876543 33445442 568888
Q ss_pred ecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 435 DRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 435 ~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
++ -+.++|+++|.+++.|+..+++..+-+.+... .-+-..-.+...+.+.....
T Consensus 620 dP-----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~----~FSWe~ia~~yl~~i~~~~~ 673 (1050)
T TIGR02468 620 DP-----HDQQAIADALLKLVADKQLWAECRQNGLKNIH----LFSWPEHCKTYLSRIASCRP 673 (1050)
T ss_pred CC-----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhc
Confidence 54 57999999999999998655444333222111 12444445555555555443
No 69
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.76 E-value=2.1e-07 Score=94.19 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=84.5
Q ss_pred CceEEEeecCCCCC-CHHHHHHHHHHHhcCCCC-EEEEEcCCCCCCCCCCCChhhHH---hh---cCCeeEEeccChh--
Q 009851 309 SSVVYVSFGSFTIL-DQVQFQELALGLELCKRP-FLWVVRPDITTDANDRYPEGFQE---RV---AARGQMISWAPQL-- 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~~-~~~~~~~l~~al~~~~~~-~iw~~~~~~~~~~~~~l~~~~~~---~~---~~n~~v~~~vpq~-- 378 (524)
++.|++++|..... ..+.+..++++++..... +.+.+..+ +...+.+.+ .. .+|+.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------PRTRPRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------CChHHHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 45788888765432 355677788888655332 44333222 111122221 11 3677777766554
Q ss_pred -hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 379 -RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 379 -~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
.+++.+++ ||+-.| |.+.||++.|+|+|+++...+ +..+.+ .|+++.+. -+.++|.++|.+++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~------~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVG------TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecC------CCHHHHHHHHHHHhcC
Confidence 55755665 999999 778899999999999874322 223334 37776652 1589999999999988
Q ss_pred HHHHHH
Q 009851 458 QDFKAR 463 (524)
Q Consensus 458 ~~~r~~ 463 (524)
+..+++
T Consensus 338 ~~~~~~ 343 (363)
T cd03786 338 EFAYSL 343 (363)
T ss_pred chhhhc
Confidence 755544
No 70
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.76 E-value=1e-05 Score=79.56 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=67.3
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCcC--hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccH
Q 009851 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPG 91 (524)
Q Consensus 14 ~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (524)
.-|+.-+-.+.++|.++||+|.+.+-... .+.+.. -|+.+..+...- .+....+.....
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~---------yg~~y~~iG~~g------~~~~~Kl~~~~~---- 70 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL---------YGIDYIVIGKHG------DSLYGKLLESIE---- 70 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH---------cCCCeEEEcCCC------CCHHHHHHHHHH----
Confidence 35999999999999999999999887643 333333 388888887422 122111111111
Q ss_pred HHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccc
Q 009851 92 KLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 92 ~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (524)
...++++.+.. .+||++|+- ..+.+..+|..+|+|+|.+.-+
T Consensus 71 R~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 71 RQYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 12233333333 799999975 4467888999999999998754
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.75 E-value=1.2e-05 Score=83.62 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=64.8
Q ss_pred hcCCeeEEeccChhhh---hcCC--CcceEEecC---C-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEe
Q 009851 365 VAARGQMISWAPQLRV---LNHP--SIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (524)
Q Consensus 365 ~~~n~~v~~~vpq~~l---L~~~--~v~~~ItHg---G-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~ 435 (524)
+.+++.+.+++++.++ ++.+ ++++||... | -.++.||+++|+|+|+...- .....+.+. ..|..++
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVD 389 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeC
Confidence 3577778888887654 5433 223477643 3 45999999999999987553 355556553 5788775
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 009851 436 RDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMS 473 (524)
Q Consensus 436 ~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 473 (524)
. -+.+++.++|.++++|++.+ +++++..++
T Consensus 390 ~-----~d~~~la~~i~~ll~~~~~~---~~~~~~a~~ 419 (439)
T TIGR02472 390 V-----LDLEAIASALEDALSDSSQW---QLWSRNGIE 419 (439)
T ss_pred C-----CCHHHHHHHHHHHHhCHHHH---HHHHHHHHH
Confidence 4 47899999999999987543 334444443
No 72
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.71 E-value=1.9e-05 Score=79.34 Aligned_cols=139 Identities=16% Similarity=0.094 Sum_probs=79.3
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhcC--CCCEEEEEcCCCCCCCCCCCChhhH---H--hhcCCeeEEeccChh-h
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQ---E--RVAARGQMISWAPQL-R 379 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~~--~~~~iw~~~~~~~~~~~~~l~~~~~---~--~~~~n~~v~~~vpq~-~ 379 (524)
+..+++..|.... ...+.+-+.+..+... +.+++++-... ....+...+. + ...+|+.+.++.++. .
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ----GRRFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc----ccchHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 4467777787642 3344455555555442 34444443222 0111111111 1 224678888885443 6
Q ss_pred hhcCCCcceEEec--CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhc
Q 009851 380 VLNHPSIACFLSH--CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 456 (524)
Q Consensus 380 lL~~~~v~~~ItH--gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~ 456 (524)
+++.+++-.+-++ -| .+++.||+++|+|+|+.... .....+.+. +.|..++. -+.+++.++|..++.
T Consensus 260 ~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~~ 329 (355)
T cd03819 260 AYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP-----GDAEALAQALDQILS 329 (355)
T ss_pred HHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC-----CCHHHHHHHHHHHHh
Confidence 8877777333231 23 36999999999999876533 345556553 57877754 479999999976654
Q ss_pred -CHHHH
Q 009851 457 -NQDFK 461 (524)
Q Consensus 457 -~~~~r 461 (524)
|++.+
T Consensus 330 ~~~~~~ 335 (355)
T cd03819 330 LLPEGR 335 (355)
T ss_pred hCHHHH
Confidence 55433
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.70 E-value=4.7e-06 Score=83.80 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=59.8
Q ss_pred cCCeeEEe-ccChh---hhhcCCCcceEEe--c----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEe
Q 009851 366 AARGQMIS-WAPQL---RVLNHPSIACFLS--H----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (524)
Q Consensus 366 ~~n~~v~~-~vpq~---~lL~~~~v~~~It--H----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~ 435 (524)
.+|+.+.+ |+|+. .+++.+++ +|. + |..+++.||+++|+|+|+-+..+ ...+.+. +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 46787774 58875 67766666 552 2 33568999999999999877544 3335553 7777775
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCHHHHH
Q 009851 436 RDEGGIITREEIKNKVDQVLGNQDFKA 462 (524)
Q Consensus 436 ~~~~~~~t~~~l~~ai~~~l~~~~~r~ 462 (524)
. -+.+++.++|.++++|++.++
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQ 339 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHH
Confidence 3 468999999999999865433
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.69 E-value=1.7e-05 Score=78.67 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+++.+.++.++. ++++.+++ +|.- |..+++.||+++|+|+|+.... .....+.+. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC----
Confidence 4677788887765 68877776 5532 3356899999999999985443 556677774 78887754
Q ss_pred CCCHHHH---HHHHHHHhcCHHHHHHHHH
Q 009851 441 IITREEI---KNKVDQVLGNQDFKARALE 466 (524)
Q Consensus 441 ~~t~~~l---~~ai~~~l~~~~~r~~a~~ 466 (524)
-+.+.+ .+++.+++.+++.++++++
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred -CCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 456676 5666666666654444433
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.68 E-value=1.8e-05 Score=79.65 Aligned_cols=128 Identities=14% Similarity=0.184 Sum_probs=71.3
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHhcCC--CCEEEEEcCCCCCCCCCCCChhhH--HhhcCCeeEEeccChhh---hhcCC
Q 009851 312 VYVSFGSFTILDQVQFQELALGLELCK--RPFLWVVRPDITTDANDRYPEGFQ--ERVAARGQMISWAPQLR---VLNHP 384 (524)
Q Consensus 312 V~vs~GS~~~~~~~~~~~l~~al~~~~--~~~iw~~~~~~~~~~~~~l~~~~~--~~~~~n~~v~~~vpq~~---lL~~~ 384 (524)
.++..|+... .+.+..++++++... .++++. +.+. ....+.+.+. ....+++.+.+++|+.+ ++..+
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~iv-G~~~---~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIV-GNAD---HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEE-cCCC---CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 3456787642 233455666665444 454433 3321 0111111111 12357888999999874 56555
Q ss_pred CcceEEecCCh-----hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHH
Q 009851 385 SIACFLSHCGW-----NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 385 ~v~~~ItHgG~-----gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~ 459 (524)
++ ++-+.-. +++.||+++|+|+|+....+ +...+.+ .|..++. .+.+.++|.++++|++
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~-------~~~l~~~i~~l~~~~~ 332 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV-------GDDLASLLEELEADPE 332 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC-------chHHHHHHHHHHhCHH
Confidence 55 5544332 47999999999999865432 2222322 2333322 1229999999998874
Q ss_pred HH
Q 009851 460 FK 461 (524)
Q Consensus 460 ~r 461 (524)
.+
T Consensus 333 ~~ 334 (363)
T cd04955 333 EV 334 (363)
T ss_pred HH
Confidence 43
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.66 E-value=1.5e-05 Score=80.51 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=64.4
Q ss_pred hcCCeeEEeccChh---hhhcCCCcceEEec----------CChhhHHHHHHcCCceeccCcccchhhhHHhhcccccee
Q 009851 365 VAARGQMISWAPQL---RVLNHPSIACFLSH----------CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG 431 (524)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~~~~v~~~ItH----------gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G 431 (524)
..+++.+.+++|+. ++++.+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 35778888999876 45877776 5532 2357899999999999987654 366666664 788
Q ss_pred eEEecCCCCCCCHHHHHHHHHHHhcCHHHHH
Q 009851 432 LKFDRDEGGIITREEIKNKVDQVLGNQDFKA 462 (524)
Q Consensus 432 ~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 462 (524)
..++. -+.+++.++|.+++.|++.++
T Consensus 316 ~~~~~-----~d~~~l~~~i~~l~~~~~~~~ 341 (367)
T cd05844 316 LLVPE-----GDVAALAAALGRLLADPDLRA 341 (367)
T ss_pred EEECC-----CCHHHHHHHHHHHHcCHHHHH
Confidence 87753 478999999999999876443
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.65 E-value=1.5e-05 Score=79.39 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=78.3
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeeEEeccChh---hhhcCCC
Q 009851 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL---RVLNHPS 385 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~--~~~n~~v~~~vpq~---~lL~~~~ 385 (524)
.+.+..|... ..+....+++++++.+.++++.-.... ...+.....+. ..+++.+.+++++. .+++.++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 3445566652 233445677888888877765543220 00111111112 25788899999986 4677777
Q ss_pred cceEEe--cCC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 386 IACFLS--HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 386 v~~~It--HgG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
+-.+-+ +-| ..++.||+++|+|+|+.... .....+.+. ..|..++ ..+++.++|.+++..
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~-------~~~~l~~~l~~l~~~ 308 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD-------SVEELAAAVARADRL 308 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC-------CHHHHHHHHHHHhcc
Confidence 633323 234 35899999999999976553 344555542 3677663 299999999988754
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.62 E-value=3e-05 Score=77.81 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=60.8
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEe----------cCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceee
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLS----------HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 432 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~It----------HgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~ 432 (524)
.+|+.+.+++|+. .+++.+++ ++. -|.-+++.||+++|+|+|+.+..+ ....+.+. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 4788899999865 56766776 555 234579999999999999865532 33345442 4787
Q ss_pred EEecCCCCCCCHHHHHHHHHHHhcCHHH
Q 009851 433 KFDRDEGGIITREEIKNKVDQVLGNQDF 460 (524)
Q Consensus 433 ~~~~~~~~~~t~~~l~~ai~~~l~~~~~ 460 (524)
.++. -+.+++.++|.+++.|+..
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~ 330 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPEL 330 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHH
Confidence 7743 3799999999999988754
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.61 E-value=0.00013 Score=72.76 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=55.0
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEecCC----hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItHgG----~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
..++.+.+...+. ++++.+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC----
Confidence 3566666654443 68877776 776544 4799999999999998543 344455543 3444532
Q ss_pred CCCHHHHHHHHHHHhcCHH
Q 009851 441 IITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~~ 459 (524)
-+.+++.++|.++++|++
T Consensus 317 -~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 -GDPEALAEAIEALLADPA 334 (365)
T ss_pred -CCHHHHHHHHHHHHhChH
Confidence 368999999999998864
No 80
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.59 E-value=1.8e-05 Score=80.01 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=79.3
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHhcCC--CCEEEEEcCCCCCCCCCCCChhhHH--hhcCCeeEEeccCh--h---hhh
Q 009851 311 VVYVSFGSFTILDQVQFQELALGLELCK--RPFLWVVRPDITTDANDRYPEGFQE--RVAARGQMISWAPQ--L---RVL 381 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al~~~~--~~~iw~~~~~~~~~~~~~l~~~~~~--~~~~n~~v~~~vpq--~---~lL 381 (524)
.+++..|.........+..+++++.+.. .+++ .++.+. ..+.+ ....+ .+++|+.+.+++++ . +.+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g~---~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDGS---DFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCCc---cHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 5667777654322344556777775543 3443 333331 00111 11111 13478888898754 2 344
Q ss_pred cCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 382 NHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 382 ~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
+..++ +|.. |-..++.||+++|+|+|+.-..+ .....+++. ..|..++. -+.+++.++|.++++|
T Consensus 256 ~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~---g~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 256 KNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS---GPRDIIKPG-LNGELYTP-----GNIDEFVGKLNKVISG 324 (359)
T ss_pred hcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC---ChHHHccCC-CceEEECC-----CCHHHHHHHHHHHHhC
Confidence 33444 6643 33579999999999999865122 233455553 56877754 5899999999999998
Q ss_pred HHH
Q 009851 458 QDF 460 (524)
Q Consensus 458 ~~~ 460 (524)
++.
T Consensus 325 ~~~ 327 (359)
T PRK09922 325 EVK 327 (359)
T ss_pred ccc
Confidence 863
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.55 E-value=7.4e-05 Score=75.13 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=60.8
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+++.+.++..+. ++++.+++ +|.- |-.+++.||+++|+|+|+-...+ ....+.+ +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC----
Confidence 4678788875443 78876666 5543 44679999999999999755543 3344444 44544422
Q ss_pred CCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 009851 441 IITREEIKNKVDQVLGNQDFKARALEL 467 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~~~r~~a~~l 467 (524)
-+.++++++|.++++|++.+++....
T Consensus 316 -~~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 316 -ESPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred -CCHHHHHHHHHHHHhCcchhhhhhhh
Confidence 35799999999999998766554433
No 82
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.53 E-value=8.9e-05 Score=75.66 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=81.0
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcC--CCCEEEEEcCCCCCCCCCCCChhhHHh---h---cCCeeEE-eccChh-
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQER---V---AARGQMI-SWAPQL- 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~--~~~~iw~~~~~~~~~~~~~l~~~~~~~---~---~~n~~v~-~~vpq~- 378 (524)
+.++++..|.... .+....+++++++. +.++++..++.. ...+.+.+.+. . ..++... +++|+.
T Consensus 200 ~~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 200 SRPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred CceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC----cHHHHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 3356777786532 33455566666544 455555443331 11111222211 1 1235544 678765
Q ss_pred --hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC-CCCCCHHHHHHHH
Q 009851 379 --RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKV 451 (524)
Q Consensus 379 --~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~-~~~~t~~~l~~ai 451 (524)
.++..+++ +|.= +...++.||+++|+|+|+... ......+++. +.|..++.+. +..-..+++.++|
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAI 346 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHH
Confidence 56877776 6642 224577999999999998654 3455666663 6788876521 0111238999999
Q ss_pred HHHhcCHHHHH
Q 009851 452 DQVLGNQDFKA 462 (524)
Q Consensus 452 ~~~l~~~~~r~ 462 (524)
.+++.|++.++
T Consensus 347 ~~l~~~~~~~~ 357 (388)
T TIGR02149 347 NILLADPELAK 357 (388)
T ss_pred HHHHhCHHHHH
Confidence 99998875443
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.50 E-value=0.00053 Score=69.59 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=58.5
Q ss_pred CCeeEEeccChh-hhhcCCCcceEE--ec--CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCC
Q 009851 367 ARGQMISWAPQL-RVLNHPSIACFL--SH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (524)
Q Consensus 367 ~n~~v~~~vpq~-~lL~~~~v~~~I--tH--gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~ 441 (524)
.++.+.++..+. ++++.+++ +| ++ |-.+++.||+++|+|+|+-... .+...+.+. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----
Confidence 455555654433 78877777 65 33 4466999999999999986653 355566553 56877753
Q ss_pred CCHHHHHHHHHHHhcCHHHH
Q 009851 442 ITREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 442 ~t~~~l~~ai~~~l~~~~~r 461 (524)
-+.+++.++|.+++.|+..+
T Consensus 323 ~d~~~la~~i~~l~~~~~~~ 342 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAAR 342 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHH
Confidence 47899999999999887543
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.50 E-value=0.00013 Score=73.42 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=81.3
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhc-----CCCCEEEEEcCCCCCCCCCCCChhhHH-----hhcCCeeEEeccChh
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLEL-----CKRPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQL 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~-----~~~~~iw~~~~~~~~~~~~~l~~~~~~-----~~~~n~~v~~~vpq~ 378 (524)
+..+++..|+... .+....+++++++ .+.++++.- .+ ...+.+.+ ...+|+.+.++..+.
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G-~g-------~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 256 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAG-DG-------PLRATLERLIKALGLSNRVKLLGLRDDI 256 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEc-CC-------CcHHHHHHHHHhcCCCCcEEEecccccH
Confidence 4477788887532 2333344444432 245565543 22 11122221 123678888876553
Q ss_pred -hhhcCCCcceEEecC----ChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHH
Q 009851 379 -RVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (524)
Q Consensus 379 -~lL~~~~v~~~ItHg----G~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~ 453 (524)
++++.+++ +|.-. ..+++.||+++|+|+|+. |.......+++ .|.. +.. -+.+++.++|.+
T Consensus 257 ~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~~-----~~~~~~~~~i~~ 322 (360)
T cd04951 257 AAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VPI-----SDPEALANKIDE 322 (360)
T ss_pred HHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eCC-----CCHHHHHHHHHH
Confidence 78877777 55432 256899999999999874 44555556654 2444 422 478999999999
Q ss_pred Hh-cCHHHHHHHHHHHHHH
Q 009851 454 VL-GNQDFKARALELKEKA 471 (524)
Q Consensus 454 ~l-~~~~~r~~a~~l~~~~ 471 (524)
++ .++.+++...+-++.+
T Consensus 323 ll~~~~~~~~~~~~~~~~~ 341 (360)
T cd04951 323 ILKMSGEERDIIGARRERI 341 (360)
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 98 4556655444433333
No 85
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.50 E-value=7.1e-06 Score=85.42 Aligned_cols=206 Identities=12% Similarity=0.063 Sum_probs=105.8
Q ss_pred ccEEEEcCCcccccccccCCCcccccc-cccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCCCCCHHHHHH
Q 009851 251 VNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQE 329 (524)
Q Consensus 251 ~~~~l~ns~~~le~~~~~~~~~v~~VG-p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~ 329 (524)
.|.+++--..|-+.- ....-++.+|| |+....... +..++..+-+.-.+++++|-+--||-...=...+..
T Consensus 362 vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv 433 (608)
T PRK01021 362 LDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTI 433 (608)
T ss_pred hhhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 344454444444443 34456789999 665442211 122223333333334668989999854333334445
Q ss_pred HHHHHh--cC--CCCEEEEEcCCCCCCCCCCCChhhHHhhcC----CeeEEeccChhhhhcCCCcceEEecCChhhHHHH
Q 009851 330 LALGLE--LC--KRPFLWVVRPDITTDANDRYPEGFQERVAA----RGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEG 401 (524)
Q Consensus 330 l~~al~--~~--~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~----n~~v~~~vpq~~lL~~~~v~~~ItHgG~gs~~Ea 401 (524)
++++.+ .. +.+|+...... ...+.+.+...+ ++.++.--...++++.+++ .+.-+|. .+.|+
T Consensus 434 ~l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEa 503 (608)
T PRK01021 434 QVQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLET 503 (608)
T ss_pred HHHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHH
Confidence 666665 32 45666543222 111122222211 2233311012588866666 8888885 57899
Q ss_pred HHcCCceeccC-cccchhhhHHhhcc----ccce-----eeEEec--CC-CCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009851 402 VSNGIPFLCWP-YFGDQFLNERYICD----FWKV-----GLKFDR--DE-GGIITREEIKNKVDQVLGNQDFKARALELK 468 (524)
Q Consensus 402 l~~GvP~v~~P-~~~DQ~~na~rv~~----~lG~-----G~~~~~--~~-~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 468 (524)
...|+|||++= ...=-...++++.+ ..|+ |..+-+ -. -...|++.|.+++ ++|.|++++++.++=-
T Consensus 504 AL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l 582 (608)
T PRK01021 504 ALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDAC 582 (608)
T ss_pred HHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 99999998842 22222334555543 0011 111111 00 1357899999997 8888886665555554
Q ss_pred HHHHhhh
Q 009851 469 EKAMSSV 475 (524)
Q Consensus 469 ~~~~~~~ 475 (524)
+++++..
T Consensus 583 ~~lr~~L 589 (608)
T PRK01021 583 RDLYQAM 589 (608)
T ss_pred HHHHHHh
Confidence 5555544
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.48 E-value=0.0006 Score=74.14 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=56.5
Q ss_pred cCCeeEEecc-Chh---hhhcC-CC-cceEEec---CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEe
Q 009851 366 AARGQMISWA-PQL---RVLNH-PS-IACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (524)
Q Consensus 366 ~~n~~v~~~v-pq~---~lL~~-~~-v~~~ItH---gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~ 435 (524)
.+++.+.++. +.. +++.+ ++ .++||.= =| ..++.||+++|+|+|+--.. .....|++. ..|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeC
Confidence 3677777764 322 34432 21 2236642 22 35899999999999885443 466667763 6798886
Q ss_pred cCCCCCCCHHHHHHHHHHHh----cCHHHHHH
Q 009851 436 RDEGGIITREEIKNKVDQVL----GNQDFKAR 463 (524)
Q Consensus 436 ~~~~~~~t~~~l~~ai~~~l----~~~~~r~~ 463 (524)
+ -+.++++++|.+++ .|++.+++
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ 719 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQK 719 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5 47899999998876 56654443
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=0.00035 Score=69.16 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=58.2
Q ss_pred EEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009851 389 FLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARA 464 (524)
Q Consensus 389 ~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a 464 (524)
++-+||.| ..|++++|+|+|.=|++..|..-++++.+. |.|+.++ +++.+.+++..++.|++.+++.
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~ 393 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAY 393 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHH
Confidence 56699998 789999999999999999999999999996 9999984 3889999999998887655544
No 88
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.47 E-value=2.1e-05 Score=78.52 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=114.5
Q ss_pred ccEEEEcCCcccccccccCCCcccccc-cccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCCCCCHHHHHH
Q 009851 251 VNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQE 329 (524)
Q Consensus 251 ~~~~l~ns~~~le~~~~~~~~~v~~VG-p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~ 329 (524)
.|.+++--.+|-++- ....-++.||| |+....... .......+.+ -.+++++|-+--||-...-...+..
T Consensus 134 ~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~ 204 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPI 204 (373)
T ss_pred HhheeECCcccHHHH-hccCCCeEEECCcchhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 444555444444443 33445789999 665443321 1222222333 2233558999999853322233334
Q ss_pred HHHHH-----hcCCCCEEEEEcCCCCCCCCCCCChhhHH---hhcCCeeEEe-ccChhhhhcCCCcceEEecCChhhHHH
Q 009851 330 LALGL-----ELCKRPFLWVVRPDITTDANDRYPEGFQE---RVAARGQMIS-WAPQLRVLNHPSIACFLSHCGWNSTME 400 (524)
Q Consensus 330 l~~al-----~~~~~~~iw~~~~~~~~~~~~~l~~~~~~---~~~~n~~v~~-~vpq~~lL~~~~v~~~ItHgG~gs~~E 400 (524)
+++++ ...+.+|++..... ...+.+.+ ....++.+.- .-.-.+++..+++ .+.-.| ..|.|
T Consensus 205 ~l~aa~~l~~~~p~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE 274 (373)
T PF02684_consen 205 FLEAAKLLKKQRPDLQFVVPVAPE-------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLE 274 (373)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCH-------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHH
Confidence 45554 23355666554322 11111111 1223333332 2234478866666 666666 46889
Q ss_pred HHHcCCceeccC-cccchhhhHHhhccccceeeEEe-c--C-----C--CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009851 401 GVSNGIPFLCWP-YFGDQFLNERYICDFWKVGLKFD-R--D-----E--GGIITREEIKNKVDQVLGNQDFKARALELKE 469 (524)
Q Consensus 401 al~~GvP~v~~P-~~~DQ~~na~rv~~~lG~G~~~~-~--~-----~--~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~ 469 (524)
+...|+|||++= ...=-...|+++.+ ... +.+. . + | -+..|++.|.+++.++|.|++.++..+...+
T Consensus 275 ~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~ 352 (373)
T PF02684_consen 275 AALLGVPMVVAYKVSPLTYFIAKRLVK-VKY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFR 352 (373)
T ss_pred HHHhCCCEEEEEcCcHHHHHHHHHhhc-CCE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998743 32333456666644 232 1111 0 0 0 1457999999999999999977777777777
Q ss_pred HHHhhhhcCCCcH
Q 009851 470 KAMSSVREGGSSY 482 (524)
Q Consensus 470 ~~~~~~~~~g~~~ 482 (524)
.+++..+.|.++.
T Consensus 353 ~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 353 EIRQLLGPGASSR 365 (373)
T ss_pred HHHHhhhhccCCH
Confidence 7777655555544
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.46 E-value=4.2e-05 Score=76.84 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=61.7
Q ss_pred hcCCeeEEeccChh---hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC
Q 009851 365 VAARGQMISWAPQL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (524)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~ 437 (524)
..+|+.+.+++|+. ++++.+++ ++.- |..+++.||+++|+|+|+.... .....+. ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeCC-
Confidence 45788888999886 56766666 4422 3356899999999999985442 1222222 23444533
Q ss_pred CCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009851 438 EGGIITREEIKNKVDQVLGNQDFKARALELKE 469 (524)
Q Consensus 438 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~ 469 (524)
-+.+++.++|.+++.|++.+.+..+-+.
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4799999999999999877666555443
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.41 E-value=0.00033 Score=71.11 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=52.8
Q ss_pred CCeeEEe-ccChhh---hhcCCCcceEEe-c-----CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEe
Q 009851 367 ARGQMIS-WAPQLR---VLNHPSIACFLS-H-----CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (524)
Q Consensus 367 ~n~~v~~-~vpq~~---lL~~~~v~~~It-H-----gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~ 435 (524)
+|+.+.. |+|+.+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ......+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566554 788865 4877777 663 1 12 3579999999999998643 2356667664 7888873
Q ss_pred cCCCCCCCHHHHHHHHHHHh
Q 009851 436 RDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 436 ~~~~~~~t~~~l~~ai~~~l 455 (524)
+.+++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4789999998775
No 91
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.34 E-value=0.00063 Score=70.05 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=51.3
Q ss_pred EEeccChhhhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHH
Q 009851 371 MISWAPQLRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREE 446 (524)
Q Consensus 371 v~~~vpq~~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~ 446 (524)
+.++.+..+++...++ ||.- +=.+++.||+++|+|+|+.-..+ + ..+.+. +-|... -+.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-------~~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-------DDGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-------CCHHH
Confidence 3466666678877766 8876 34678999999999999876543 2 334332 455444 26889
Q ss_pred HHHHHHHHhcCH
Q 009851 447 IKNKVDQVLGNQ 458 (524)
Q Consensus 447 l~~ai~~~l~~~ 458 (524)
+.++|.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999754
No 92
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=0.00013 Score=71.49 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=94.4
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHH----hcC-CCCEEEEEcCCCCCCCCCCCChhhHHhhc--CCeeEE---eccChh
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGL----ELC-KRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMI---SWAPQL 378 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al----~~~-~~~~iw~~~~~~~~~~~~~l~~~~~~~~~--~n~~v~---~~vpq~ 378 (524)
+..|.+++=-..... +.++.+++++ +.. ++.+|..+-.. ..+.+-..+++. .|+++. ++.+..
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~------~~v~e~~~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR------PRVRELVLKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC------hhhhHHHHHHhCCCCcEEEeCCcchHHHH
Confidence 348888764433333 3445555544 444 45555443222 111111123333 457776 678888
Q ss_pred hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH
Q 009851 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 379 ~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~ 458 (524)
.+++++.+ ++|-.| |-.-||-..|+|.+++=..-+++. +++. |.-+.+. .+.+.|.+++.++++++
T Consensus 277 ~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 277 NLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG------TDEENILDAATELLEDE 342 (383)
T ss_pred HHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC------ccHHHHHHHHHHHhhCh
Confidence 99988877 999988 457899999999999999999997 4432 7766664 47899999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 009851 459 DFKARALELKEKAM 472 (524)
Q Consensus 459 ~~r~~a~~l~~~~~ 472 (524)
+..+|.+....-+.
T Consensus 343 ~~~~~m~~~~npYg 356 (383)
T COG0381 343 EFYERMSNAKNPYG 356 (383)
T ss_pred HHHHHHhcccCCCc
Confidence 88876665554443
No 93
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.32 E-value=0.00016 Score=72.94 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=80.4
Q ss_pred CceEEEeecCC---CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeeEEeccChh---hh
Q 009851 309 SSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQL---RV 380 (524)
Q Consensus 309 ~~vV~vs~GS~---~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~--~~n~~v~~~vpq~---~l 380 (524)
++.|++++-.. .....+.+..+++++...+.++++.+..... ....+.+.+.+.. .+|+.+.+-++.. .+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p--~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA--GSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC--CchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 35888887543 2344678899999997777666655432210 0011111222222 3678888765554 68
Q ss_pred hcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeE-EecCCCCCCCHHHHHHHHHHHhcCHH
Q 009851 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK-FDRDEGGIITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 381 L~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~-~~~~~~~~~t~~~l~~ai~~~l~~~~ 459 (524)
++++++ +||-++.+- .||.+.|||.|.+- +-+ . ..+. |..+. +. .+.++|.+++.+++ +++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e-~~~~-g~nvl~vg------~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---K-GRLR-ADSVIDVD------PDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---h-hhhh-cCeEEEeC------CCHHHHHHHHHHHh-ChH
Confidence 877777 999886555 99999999999763 211 1 1121 43333 32 47899999999965 444
Q ss_pred HH
Q 009851 460 FK 461 (524)
Q Consensus 460 ~r 461 (524)
++
T Consensus 341 ~~ 342 (365)
T TIGR03568 341 FK 342 (365)
T ss_pred HH
Confidence 43
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.31 E-value=0.00028 Score=71.61 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=56.3
Q ss_pred cCCeeEEecc--Chh---hhhcCCCcceEEecC---C-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEec
Q 009851 366 AARGQMISWA--PQL---RVLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (524)
Q Consensus 366 ~~n~~v~~~v--pq~---~lL~~~~v~~~ItHg---G-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~ 436 (524)
.+++.+.++. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+....+ ....+.+. ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 4567777776 443 56766666 77533 2 459999999999999865432 33445553 5666553
Q ss_pred CCCCCCCHHHHHHHHHHHhcCHHHHHH
Q 009851 437 DEGGIITREEIKNKVDQVLGNQDFKAR 463 (524)
Q Consensus 437 ~~~~~~t~~~l~~ai~~~l~~~~~r~~ 463 (524)
+.+++..+|.+++.|++.++.
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~ 343 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRK 343 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHH
Confidence 356788899999988765543
No 95
>PLN00142 sucrose synthase
Probab=98.22 E-value=0.0015 Score=71.18 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=44.9
Q ss_pred EEec---CChh-hHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHH----hcCHHH
Q 009851 389 FLSH---CGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV----LGNQDF 460 (524)
Q Consensus 389 ~ItH---gG~g-s~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~----l~~~~~ 460 (524)
||.- -|+| ++.||+++|+|+|+... ......|++. ..|..+++ -+.++++++|.++ +.|++.
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~l 739 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPSY 739 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHHH
Confidence 6642 4444 89999999999988654 3456667663 57888865 4678888887654 467755
Q ss_pred HHH
Q 009851 461 KAR 463 (524)
Q Consensus 461 r~~ 463 (524)
+++
T Consensus 740 r~~ 742 (815)
T PLN00142 740 WNK 742 (815)
T ss_pred HHH
Confidence 443
No 96
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.22 E-value=0.00029 Score=72.30 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=59.2
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEE--ec--CCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFL--SH--CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 439 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~I--tH--gG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~ 439 (524)
..++.+.+++++. .+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ... -|.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 3678888999865 67877777 55 32 354 36999999999999987643221 122 26676663
Q ss_pred CCCCHHHHHHHHHHHhcCHHHHH
Q 009851 440 GIITREEIKNKVDQVLGNQDFKA 462 (524)
Q Consensus 440 ~~~t~~~l~~ai~~~l~~~~~r~ 462 (524)
-+.+++.++|.++++|++.++
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~ 367 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAERE 367 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHH
Confidence 378999999999999876443
No 97
>PLN02949 transferase, transferring glycosyl groups
Probab=98.20 E-value=0.0025 Score=66.42 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=68.0
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEe---cCChh-hHHHHHHcCCceeccCcccchhhhHHhhccc-cc-eeeEEec
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDF-WK-VGLKFDR 436 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~It---HgG~g-s~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~-lG-~G~~~~~ 436 (524)
.+++.+.+++|+. ++|+.+++ +|+ +-|+| ++.||+++|+|+|+....+- ....+.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 5788899999876 46766665 663 23333 79999999999998765431 00111110 01 23332
Q ss_pred CCCCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 437 DEGGIITREEIKNKVDQVLGN-QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 437 ~~~~~~t~~~l~~ai~~~l~~-~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
-+.++++++|.+++++ ++.++ ++++..++.++ .-+.+.-.+++.+.+...+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~---~m~~~ar~~~~-~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERL---EIAAAARKRAN-RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHh
Confidence 1789999999999984 43322 23333333321 23555556666666655543
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.16 E-value=0.00011 Score=74.02 Aligned_cols=135 Identities=11% Similarity=0.134 Sum_probs=88.9
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChh---hhhcCCCcce
Q 009851 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL---RVLNHPSIAC 388 (524)
Q Consensus 312 V~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~---~lL~~~~v~~ 388 (524)
.++..|... .......+++++++.+.++++.-++. ..+.+.+...+|+.+.+++|+. .+++.+++-+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 455667653 23445667888877777766554322 1233344567899999999985 5787777733
Q ss_pred EEecCCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCH-HHHHHHHH
Q 009851 389 FLSHCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-DFKARALE 466 (524)
Q Consensus 389 ~ItHgG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~-~~r~~a~~ 466 (524)
+-+.-|. .++.||+++|+|+|+....+ ....+.+. +.|..++. -+.+++.++|.++++|+ ..++++++
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~ 336 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRA 336 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHH
Confidence 2233343 45789999999999975433 44456563 67888754 47899999999999887 44444433
No 99
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.15 E-value=4.8e-05 Score=75.49 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=84.1
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCCCC-EEEEEcCCCCCCCCCCCChhhHHhhc--CCeeEEeccChhhhhcCCC
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRP-FLWVVRPDITTDANDRYPEGFQERVA--ARGQMISWAPQLRVLNHPS 385 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~-~iw~~~~~~~~~~~~~l~~~~~~~~~--~n~~v~~~vpq~~lL~~~~ 385 (524)
+++|.+--||....-...+..++++..+...+ ..+.+... ... +.+.+... ..+.+.+ .-.++++.++
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------FKG-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------CcH-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 35888888886433234444344555333221 22222211 001 22222221 1222332 3347887777
Q ss_pred cceEEecCChhhHHHHHHcCCceeccCcc--cchhhhHHhhc---cccceeeEE-e----c---C--CCCCCCHHHHHHH
Q 009851 386 IACFLSHCGWNSTMEGVSNGIPFLCWPYF--GDQFLNERYIC---DFWKVGLKF-D----R---D--EGGIITREEIKNK 450 (524)
Q Consensus 386 v~~~ItHgG~gs~~Eal~~GvP~v~~P~~--~DQ~~na~rv~---~~lG~G~~~-~----~---~--~~~~~t~~~l~~a 450 (524)
+ .|+-+|..|+ |+...|+|||+ +.- .=|..||+++. . .|++-.+ + . - -....|++.|.++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 6 9999999999 99999999988 543 46788999987 5 4666333 2 0 0 0145889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 009851 451 VDQVLGNQDFKARALELKEKA 471 (524)
Q Consensus 451 i~~~l~~~~~r~~a~~l~~~~ 471 (524)
+.+ ...+++++...++.+.+
T Consensus 313 i~~-~~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 313 YKE-MDREKFFKKSKELREYL 332 (347)
T ss_pred HHH-HHHHHHHHHHHHHHHHh
Confidence 987 22334444444444444
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.13 E-value=0.00099 Score=68.78 Aligned_cols=79 Identities=22% Similarity=0.196 Sum_probs=54.9
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEe-----cCChhhHHHHHHcCCceeccCcccchhhhHHhhc---cccceeeEE
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLS-----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYIC---DFWKVGLKF 434 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~It-----HgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~---~~lG~G~~~ 434 (524)
.+++.+.+++|+. .+|..+++ +|+ |-| -++.||+++|+|+|+.-..+. ....++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 5788899999877 57766666 553 223 488999999999987554321 112232 32 567664
Q ss_pred ecCCCCCCCHHHHHHHHHHHhcCH
Q 009851 435 DRDEGGIITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 435 ~~~~~~~~t~~~l~~ai~~~l~~~ 458 (524)
-+.++++++|.++++++
T Consensus 377 -------~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -------STAEEYAEAIEKILSLS 393 (419)
T ss_pred -------CCHHHHHHHHHHHHhCC
Confidence 27899999999999865
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.10 E-value=1e-05 Score=80.81 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred CCCceEEEeecCCCCCC-H---HHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCCCCChhhHHhhc--CCeeEEeccChh-
Q 009851 307 QPSSVVYVSFGSFTILD-Q---VQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMISWAPQL- 378 (524)
Q Consensus 307 ~~~~vV~vs~GS~~~~~-~---~~~~~l~~al~~~-~~~~iw~~~~~~~~~~~~~l~~~~~~~~~--~n~~v~~~vpq~- 378 (524)
.+++.+++++=...... + ..+.++++++.+. +.++||.+.... .....+.+.+. +|+.++..+++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p------~~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP------RGSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H------HHHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc------hHHHHHHHHhcccCCEEEECCCCHHH
Confidence 44779999985554444 3 3455566666554 778999885331 00111222221 589888766655
Q ss_pred --hhhcCCCcceEEecCChhhHH-HHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHh
Q 009851 379 --RVLNHPSIACFLSHCGWNSTM-EGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 379 --~lL~~~~v~~~ItHgG~gs~~-Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l 455 (524)
.+|+++++ +||..| ++. ||.+.|+|.|.+=..++.+. -+ . .|..+.+. .+.++|.++|.+++
T Consensus 252 ~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe---~r-~-~~~nvlv~------~~~~~I~~ai~~~l 316 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQE---GR-E-RGSNVLVG------TDPEAIIQAIEKAL 316 (346)
T ss_dssp HHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HH---HH-H-TTSEEEET------SSHHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHH---HH-h-hcceEEeC------CCHHHHHHHHHHHH
Confidence 78877777 999999 555 99999999999933333222 12 2 25555553 58999999999999
Q ss_pred cCHHHHHHHHH
Q 009851 456 GNQDFKARALE 466 (524)
Q Consensus 456 ~~~~~r~~a~~ 466 (524)
.+.+..++.+.
T Consensus 317 ~~~~~~~~~~~ 327 (346)
T PF02350_consen 317 SDKDFYRKLKN 327 (346)
T ss_dssp H-HHHHHHHHC
T ss_pred hChHHHHhhcc
Confidence 87555554444
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.10 E-value=1e-05 Score=67.46 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=76.3
Q ss_pred eEEEeecCCCCCCHH----HHHHHHHHHhcCCC-CEEEEEcCCCCCCCCCCCChhhHH-hhcCCeeE--EeccCh-hhhh
Q 009851 311 VVYVSFGSFTILDQV----QFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQE-RVAARGQM--ISWAPQ-LRVL 381 (524)
Q Consensus 311 vV~vs~GS~~~~~~~----~~~~l~~al~~~~~-~~iw~~~~~~~~~~~~~l~~~~~~-~~~~n~~v--~~~vpq-~~lL 381 (524)
.+||+-||... +.= .-.+..+.|.+.|+ +.|..++.+.. ..++.... +..+...+ .+|-|- .+..
T Consensus 5 ~vFVTVGtT~F-d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 5 TVFVTVGTTSF-DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----FFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred EEEEEeccccH-HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----CCCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 79999999752 211 12335666666675 67888877621 11111111 11122223 477887 4677
Q ss_pred cCCCcceEEecCChhhHHHHHHcCCceeccCcc----cchhhhHHhhccccceeeEE
Q 009851 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF----GDQFLNERYICDFWKVGLKF 434 (524)
Q Consensus 382 ~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~----~DQ~~na~rv~~~lG~G~~~ 434 (524)
..+++ +|+|+|+||+.|.|..|+|.|+++-- ..|..-|..+++. |.=..=
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C 132 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYC 132 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEe
Confidence 55666 99999999999999999999999953 5799999999874 665444
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.07 E-value=0.00069 Score=71.04 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=72.8
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHh---cCCCCEEEEEcCCCCCCCCCCCChh---hHHhhcCCeeE-EeccChh--h
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLE---LCKRPFLWVVRPDITTDANDRYPEG---FQERVAARGQM-ISWAPQL--R 379 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~---~~~~~~iw~~~~~~~~~~~~~l~~~---~~~~~~~n~~v-~~~vpq~--~ 379 (524)
+.++++..|.... .+.+..+++|++ +.+.++++.-++. ..+.+. ..++.+.++.+ .++-.+. .
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 3467777786532 223334444442 3366766553221 111112 22334556554 3563222 5
Q ss_pred hhcCCCcceEEe---cCChh-hHHHHHHcCCceeccCccc--chhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHH
Q 009851 380 VLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (524)
Q Consensus 380 lL~~~~v~~~It---HgG~g-s~~Eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~ 453 (524)
+++.+++ +|. +-|+| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++. -+.+++.++|.+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~~ 424 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALRR 424 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHHH
Confidence 6766666 664 23444 8899999999998865432 221111111222 77888854 578999999999
Q ss_pred Hhc
Q 009851 454 VLG 456 (524)
Q Consensus 454 ~l~ 456 (524)
++.
T Consensus 425 ~l~ 427 (466)
T PRK00654 425 ALE 427 (466)
T ss_pred HHH
Confidence 886
No 104
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.99 E-value=0.0031 Score=64.07 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=52.4
Q ss_pred cCCeeEEeccChhh---hhcCCCcceEE------ecCCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEe
Q 009851 366 AARGQMISWAPQLR---VLNHPSIACFL------SHCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (524)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~~~~v~~~I------tHgG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~ 435 (524)
.+|+.+.+++|+.+ .+++.++..+- +.++. +.+.|++++|+|+|+.++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 47899999999774 67777773332 22332 458999999999998763 122222 13 33332
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCH
Q 009851 436 RDEGGIITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 436 ~~~~~~~t~~~l~~ai~~~l~~~ 458 (524)
. -+.+++.++|.+++.++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcC
Confidence 1 27999999999987544
No 105
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.98 E-value=0.0001 Score=75.12 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=97.2
Q ss_pred CCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh------cCCeeEEeccChhhhh
Q 009851 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV------AARGQMISWAPQLRVL 381 (524)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~------~~n~~v~~~vpq~~lL 381 (524)
++.++|.||.+....+++.+....+.|++.+...+|........ ...+.+.. ++++.+.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG------EARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH------HHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH------HHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 35699999999988999999999999998999899987654111 12222222 4778788888876544
Q ss_pred ---cCCCcceEE---ecCChhhHHHHHHcCCceeccCcccchhhhH-HhhccccceeeEEecCCCCCCCHHHHHHHHHHH
Q 009851 382 ---NHPSIACFL---SHCGWNSTMEGVSNGIPFLCWPYFGDQFLNE-RYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 454 (524)
Q Consensus 382 ---~~~~v~~~I---tHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na-~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~ 454 (524)
...++ ++ ..+|.+|++|||+.|||+|.+|--.=.-..+ ..+.. +|+.-.+. -+.++-.+.-.++
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~s~~eYv~~Av~L 427 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------DSEEEYVEIAVRL 427 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------SSHHHHHHHHHHH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------CCHHHHHHHHHHH
Confidence 33443 43 4678899999999999999999433222223 33444 57775553 2566655555566
Q ss_pred hcCHHHHHHHH-HHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 455 LGNQDFKARAL-ELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 455 l~~~~~r~~a~-~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
-+|.+++++.+ +|+++..+ |+--+-..+++.+|...+
T Consensus 428 a~D~~~l~~lR~~Lr~~~~~------SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 428 ATDPERLRALRAKLRDRRSK------SPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HH-HHHHHHHHHHHHHHHHH------SGGG-HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHH
Confidence 67876655443 34444444 666677888888887654
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.95 E-value=0.0037 Score=65.80 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=72.3
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhh---HHhhcCCeeEEeccChh---hhh
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGF---QERVAARGQMISWAPQL---RVL 381 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~---~~~~~~n~~v~~~vpq~---~lL 381 (524)
+.++++..|.... ...+.+.+.+..+.+.+.++++.-.+. ..+.+.+ .++..+|+.+....++. .++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD------PEYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 4467777787642 223333333333333445655543221 1111222 22235677765433443 467
Q ss_pred cCCCcceEEec---CCh-hhHHHHHHcCCceeccCcccchhhhHHhhccc-----cceeeEEecCCCCCCCHHHHHHHHH
Q 009851 382 NHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDF-----WKVGLKFDRDEGGIITREEIKNKVD 452 (524)
Q Consensus 382 ~~~~v~~~ItH---gG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~-----lG~G~~~~~~~~~~~t~~~l~~ai~ 452 (524)
+.+++ ++.- -|. .+.+||+++|+|+|+....+ ....+.+. -|.|..++. -+.+++.++|.
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~~~~~-----~~~~~l~~~i~ 437 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGFVFEG-----YNADALLAALR 437 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeEEeCC-----CCHHHHHHHHH
Confidence 66666 6642 122 47899999999998765532 22222221 157888854 57899999999
Q ss_pred HHhc
Q 009851 453 QVLG 456 (524)
Q Consensus 453 ~~l~ 456 (524)
+++.
T Consensus 438 ~~l~ 441 (476)
T cd03791 438 RALA 441 (476)
T ss_pred HHHH
Confidence 9885
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.94 E-value=0.034 Score=60.53 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=62.3
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEe---cCC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~It---HgG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+++.+.+|.++. .+++..++ ||. +.| -+++.||+++|+|+|+.... .....|.+. ..|..++. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 4778888888765 67866666 554 444 56899999999999987653 355566663 57888865 3
Q ss_pred CCCHHHHHHHHHHHh----cCHHHHHHHHHH
Q 009851 441 IITREEIKNKVDQVL----GNQDFKARALEL 467 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l----~~~~~r~~a~~l 467 (524)
..+.+++.+++.+++ .++.+++++++.
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 345666666666655 455666665544
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.90 E-value=0.0067 Score=63.78 Aligned_cols=131 Identities=10% Similarity=0.025 Sum_probs=73.9
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChh---hHHhhcCCeeEEeccChh---hhh
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEG---FQERVAARGQMISWAPQL---RVL 381 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~---~~~~~~~n~~v~~~vpq~---~lL 381 (524)
+.++++..|.... ...+.+.+.+..+.+.+.++++. +.+. ..+.+. +.+..+.|+.+....++. .++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-----~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD-----PELEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC-----HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 3467777787642 22333333333333335566544 3220 111122 223345667666555554 477
Q ss_pred cCCCcceEEec---CChh-hHHHHHHcCCceeccCcccchhhhHHhhcc-----ccceeeEEecCCCCCCCHHHHHHHHH
Q 009851 382 NHPSIACFLSH---CGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICD-----FWKVGLKFDRDEGGIITREEIKNKVD 452 (524)
Q Consensus 382 ~~~~v~~~ItH---gG~g-s~~Eal~~GvP~v~~P~~~DQ~~na~rv~~-----~lG~G~~~~~~~~~~~t~~~l~~ai~ 452 (524)
+.+++ ++.- -|.| +.+||+++|+|.|+-...+ ....+.+ .-+.|..++. -+.+++.++|.
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~-----~d~~~la~~i~ 432 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEE-----YDPGALLAALS 432 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCC-----CCHHHHHHHHH
Confidence 66666 6642 2433 7899999999998765532 2222222 0167888754 57899999999
Q ss_pred HHhc
Q 009851 453 QVLG 456 (524)
Q Consensus 453 ~~l~ 456 (524)
+++.
T Consensus 433 ~~l~ 436 (473)
T TIGR02095 433 RALR 436 (473)
T ss_pred HHHH
Confidence 9986
No 109
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.90 E-value=0.0036 Score=66.45 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=53.3
Q ss_pred CeeEEeccChh-hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCC
Q 009851 368 RGQMISWAPQL-RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGII 442 (524)
Q Consensus 368 n~~v~~~vpq~-~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~ 442 (524)
++.+.++.++. ++++..++ ||.= |=.+++.||+++|+|+|+...-+... +.+ |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------C
Confidence 35556777765 48866666 7652 22568999999999999977655321 323 3332232 2
Q ss_pred CHHHHHHHHHHHhcCHHHH
Q 009851 443 TREEIKNKVDQVLGNQDFK 461 (524)
Q Consensus 443 t~~~l~~ai~~~l~~~~~r 461 (524)
+.+++.++|.++|.|+.-+
T Consensus 667 D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQP 685 (794)
T ss_pred CHHHHHHHHHHHHhCchhh
Confidence 6899999999999887633
No 110
>PLN02316 synthase/transferase
Probab=97.78 E-value=0.026 Score=63.41 Aligned_cols=114 Identities=8% Similarity=0.035 Sum_probs=65.3
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEecC---C-hhhHHHHHHcCCceeccCccc--chhhhH-------Hhhccccc
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFG--DQFLNE-------RYICDFWK 429 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~ItHg---G-~gs~~Eal~~GvP~v~~P~~~--DQ~~na-------~rv~~~lG 429 (524)
++++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+....+ |..... ...-. -+
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EP 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CC
Confidence 3566665444543 57755555 77432 2 358999999999988754432 221111 10001 15
Q ss_pred eeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHH
Q 009851 430 VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFL 489 (524)
Q Consensus 430 ~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 489 (524)
.|..++. .+++.|..+|.++|.+ |.+..+.+++..++.+...-|-....+...
T Consensus 976 tGflf~~-----~d~~aLa~AL~raL~~--~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 976 NGFSFDG-----ADAAGVDYALNRAISA--WYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred ceEEeCC-----CCHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 6877753 6899999999999964 333444455555555444555444443333
No 111
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.77 E-value=0.00085 Score=69.02 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=72.9
Q ss_pred cCCeeEEeccChhh---hhcCCCcceEEecCC----hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC
Q 009851 366 AARGQMISWAPQLR---VLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (524)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~~~~v~~~ItHgG----~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~ 438 (524)
.+++.+.+|+++.+ ++...++.+||...- -++++||+++|+|+|+-.. ......+.+. +.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC--
Confidence 35678889999874 555445555776543 5689999999999998543 3356667662 58887753
Q ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHH
Q 009851 439 GGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQN 487 (524)
Q Consensus 439 ~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 487 (524)
.-+.+++.++|.++++|++.++ ++++..++.+.+.-+......+
T Consensus 361 --~~~~~~la~~I~~ll~~~~~~~---~m~~~ar~~~~~~f~~~~~~~~ 404 (407)
T cd04946 361 --DPTPNELVSSLSKFIDNEEEYQ---TMREKAREKWEENFNASKNYRE 404 (407)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHcCHHHhHHH
Confidence 2478999999999998875443 3444555444444444444433
No 112
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00038 Score=57.19 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=70.7
Q ss_pred EEEeecCCCCCCHHHHHH--HHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEec--cCh-hhhhcCCCc
Q 009851 312 VYVSFGSFTILDQVQFQE--LALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW--APQ-LRVLNHPSI 386 (524)
Q Consensus 312 V~vs~GS~~~~~~~~~~~--l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~--vpq-~~lL~~~~v 386 (524)
|||+.||....=...+.. ..+-.+....++|..++.+ +..|- .+ ..+.+| -+- +.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kpv------ag-l~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKPV------AG-LRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Ccccc------cc-cEEEeechHHHHHHHhhcceE
Confidence 789999972211112111 2222344456889999876 22220 11 134444 343 356755565
Q ss_pred ceEEecCChhhHHHHHHcCCceeccCccc--------chhhhHHhhccccceeeEEec
Q 009851 387 ACFLSHCGWNSTMEGVSNGIPFLCWPYFG--------DQFLNERYICDFWKVGLKFDR 436 (524)
Q Consensus 387 ~~~ItHgG~gs~~Eal~~GvP~v~~P~~~--------DQ~~na~rv~~~lG~G~~~~~ 436 (524)
+|+|||.||+..++..++|.|++|--. .|...|..+.+ ++.=+...+
T Consensus 69 --VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 69 --VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred --EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 999999999999999999999999753 47888888877 577776654
No 113
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.70 E-value=0.0014 Score=67.43 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=73.2
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEec---------CCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceee
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLSH---------CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 432 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~ItH---------gG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~ 432 (524)
.+++.+.+|+|+. +++..+++ ||.- -|. ++++||+++|+|+|+.... .....+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 4678889999987 46766776 6642 244 5789999999999986543 344556553 5787
Q ss_pred EEecCCCCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Q 009851 433 KFDRDEGGIITREEIKNKVDQVLG-NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWT 492 (524)
Q Consensus 433 ~~~~~~~~~~t~~~l~~ai~~~l~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i 492 (524)
.++. -+.+++.++|.++++ |++.++ ++++..++.+.+.-+.+...+.+.+.+
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~---~~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELA---PVVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7754 479999999999998 875433 333333333333444444444444443
No 114
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=0.0071 Score=59.48 Aligned_cols=216 Identities=14% Similarity=0.029 Sum_probs=106.0
Q ss_pred cccEEEEcCCcccccccccCCCcccccc-cccccCCCCCCCCCCccCcchhhHhhhcCCCCceEEEeecCCCCCCHHHHH
Q 009851 250 AVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQ 328 (524)
Q Consensus 250 ~~~~~l~ns~~~le~~~~~~~~~v~~VG-p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~ 328 (524)
.+|.++.--.++-++- ....-...||| |+....+. .+..+++.+-+....++.++-+--||-.+.-...+.
T Consensus 136 ~~D~lLailPFE~~~y-~k~g~~~~yVGHpl~d~i~~-------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~ 207 (381)
T COG0763 136 YVDHLLAILPFEPAFY-DKFGLPCTYVGHPLADEIPL-------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLP 207 (381)
T ss_pred HhhHeeeecCCCHHHH-HhcCCCeEEeCChhhhhccc-------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHH
Confidence 3454554333333332 22222488999 55444322 123333444443333455999999986332222333
Q ss_pred HHHHHHh-----cCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCe-eEEec-cChh--hhhcCCCcceEEecCChhhHH
Q 009851 329 ELALGLE-----LCKRPFLWVVRPDITTDANDRYPEGFQERVAARG-QMISW-APQL--RVLNHPSIACFLSHCGWNSTM 399 (524)
Q Consensus 329 ~l~~al~-----~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~-~v~~~-vpq~--~lL~~~~v~~~ItHgG~gs~~ 399 (524)
-+.++.. ..+.+|+.-+... ..+.+.. +....+. ...-+ .++. +.+..+++ .+.-+|. -+.
T Consensus 208 ~f~~a~~~l~~~~~~~~~vlp~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tL 277 (381)
T COG0763 208 PFVQAAQELKARYPDLKFVLPLVNA----KYRRIIE---EALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATL 277 (381)
T ss_pred HHHHHHHHHHhhCCCceEEEecCcH----HHHHHHH---HHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHH
Confidence 3444442 3446777655332 0011111 1111222 11112 2222 46644554 6777775 468
Q ss_pred HHHHcCCceeccCc-ccchhhhHHhhccccceeeEEec--C-----C--CCCCCHHHHHHHHHHHhcCH----HHHHHHH
Q 009851 400 EGVSNGIPFLCWPY-FGDQFLNERYICDFWKVGLKFDR--D-----E--GGIITREEIKNKVDQVLGNQ----DFKARAL 465 (524)
Q Consensus 400 Eal~~GvP~v~~P~-~~DQ~~na~rv~~~lG~G~~~~~--~-----~--~~~~t~~~l~~ai~~~l~~~----~~r~~a~ 465 (524)
|+..+|+|||+.=- ..=-++.+++..+ +...-..+. + | -+..+++.|.+++.+++.|+ .+++...
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 99999999987421 1112334555443 232211111 0 0 14578999999999999988 3555555
Q ss_pred HHHHHHHhhhhcCCCcHHHHHHH
Q 009851 466 ELKEKAMSSVREGGSSYKTFQNF 488 (524)
Q Consensus 466 ~l~~~~~~~~~~~g~~~~~~~~~ 488 (524)
++.+.++ ++++++.+.+.+
T Consensus 357 ~l~~~l~----~~~~~e~aA~~v 375 (381)
T COG0763 357 ELHQYLR----EDPASEIAAQAV 375 (381)
T ss_pred HHHHHHc----CCcHHHHHHHHH
Confidence 5555554 354444443333
No 115
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.65 E-value=0.028 Score=59.12 Aligned_cols=88 Identities=10% Similarity=0.088 Sum_probs=61.0
Q ss_pred cCCeeEEeccChhhhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccc----c-ceeeEEec
Q 009851 366 AARGQMISWAPQLRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF----W-KVGLKFDR 436 (524)
Q Consensus 366 ~~n~~v~~~vpq~~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~----l-G~G~~~~~ 436 (524)
.+|+.+.+...-.++++..++ +|.- |--+++.||+++|+|+|+-. .......+.+. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 478888885555678866666 5533 33568999999999999843 33344445441 1 26777754
Q ss_pred CCCCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009851 437 DEGGIITREEIKNKVDQVLGNQDFKARA 464 (524)
Q Consensus 437 ~~~~~~t~~~l~~ai~~~l~~~~~r~~a 464 (524)
-+.+++.++|.++++|++.+++.
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~ 449 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAM 449 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHH
Confidence 57999999999999998655443
No 116
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.57 E-value=0.032 Score=58.81 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=58.5
Q ss_pred cCCeeEEeccChhhhhcCCCcceEEe---cCC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCC--C
Q 009851 366 AARGQMISWAPQLRVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE--G 439 (524)
Q Consensus 366 ~~n~~v~~~vpq~~lL~~~~v~~~It---HgG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~--~ 439 (524)
.+++.+.++.+..+++..+++ +|. .=| ..+++||+++|+|+|+....+ .....+++. .-|..++.+. +
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 456777888888899977777 664 233 458999999999999866431 234455553 5677775310 0
Q ss_pred CCCC-HHHHHHHHHHHhcCH
Q 009851 440 GIIT-REEIKNKVDQVLGNQ 458 (524)
Q Consensus 440 ~~~t-~~~l~~ai~~~l~~~ 458 (524)
..-+ .++++++|.++++++
T Consensus 449 d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred chhHHHHHHHHHHHHHhChH
Confidence 0112 788999999999543
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.55 E-value=0.0017 Score=57.80 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=65.4
Q ss_pred hcCCeeEEeccChh---hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecC
Q 009851 365 VAARGQMISWAPQL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (524)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~ 437 (524)
...++.+.+++++. .++..+++ +|+. |+.+++.||+++|+|+|+. |...+...+.+. +.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-
Confidence 35788899999833 67867666 7776 6677999999999999864 455566677774 77888854
Q ss_pred CCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q 009851 438 EGGIITREEIKNKVDQVLGNQDFKARAL 465 (524)
Q Consensus 438 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~ 465 (524)
-+.+++.++|.+++.|++.+++..
T Consensus 143 ----~~~~~l~~~i~~~l~~~~~~~~l~ 166 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLNDPELRQKLG 166 (172)
T ss_dssp ----TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHCCHHHHHHHH
Confidence 489999999999998875544443
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.51 E-value=0.0083 Score=61.11 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=73.3
Q ss_pred hhcCCeeEEeccChh---hhhcCCCcceEEec----CCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEe
Q 009851 364 RVAARGQMISWAPQL---RVLNHPSIACFLSH----CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (524)
Q Consensus 364 ~~~~n~~v~~~vpq~---~lL~~~~v~~~ItH----gG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~ 435 (524)
....++.+.+++|+. ++++.+++ +|.- -|. .++.||+++|+|+|+.... .+...+++. ..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEe
Confidence 345678888999865 56877777 6643 333 5788999999999987653 345556553 5676442
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHH
Q 009851 436 RDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTM 493 (524)
Q Consensus 436 ~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~ 493 (524)
...+.+++.++|.++++|++.+ ++++..++.+.+.-+.....+++.+.++
T Consensus 327 ----~~~d~~~la~~I~~ll~d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 327 ----EPMTSDSIISDINRTLADPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred ----CCCCHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2257999999999999988643 3444444332233343444444444443
No 119
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.25 E-value=0.0017 Score=66.55 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=103.8
Q ss_pred CCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHh------hcCCeeEEeccCh----
Q 009851 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQER------VAARGQMISWAPQ---- 377 (524)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~------~~~n~~v~~~vpq---- 377 (524)
++.+||.+|--....+++.++..++.|.+.+..++|.+...-.++ ..|+.. -++++.+.+-++-
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 356999999888889999999999999999999999997662221 122211 1466666554432
Q ss_pred -hhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHh-hccccceeeEEecCCCCCCCHHHHHHHHHHHh
Q 009851 378 -LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY-ICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 378 -~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~r-v~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l 455 (524)
...|..-.++.+.+. |..|.++.|+.|||||.+|.-.--...|.- +.. +|+|-.+.+ +.++-.+.--++=
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak------~~eEY~~iaV~La 902 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK------NREEYVQIAVRLA 902 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh------hHHHHHHHHHHhh
Confidence 234544445556665 678999999999999999976543334433 334 788876543 4444444333443
Q ss_pred cCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 456 GNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 456 ~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
+|..+ .++++.+.+++ +-+|+--+....+..+|.
T Consensus 903 td~~~---L~~lr~~l~~~--r~~splfd~~q~~~~LE~ 936 (966)
T KOG4626|consen 903 TDKEY---LKKLRAKLRKA--RASSPLFDTKQYAKGLER 936 (966)
T ss_pred cCHHH---HHHHHHHHHHH--hcCCCccCchHHHHHHHH
Confidence 45443 34444455543 344554444444444444
No 120
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.11 E-value=0.42 Score=49.05 Aligned_cols=116 Identities=10% Similarity=-0.046 Sum_probs=66.1
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHhcCCCCE-EEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccC-h---hhhhcCCC
Q 009851 311 VVYVSFGSFTILDQVQFQELALGLELCKRPF-LWVVRPDITTDANDRYPEGFQERVAARGQMISWAP-Q---LRVLNHPS 385 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~-iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vp-q---~~lL~~~~ 385 (524)
.+++..|............+++|+...+..+ ++.++.+. .. ...++...++.. + .++++.++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-----~~--------~~~~v~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-----PF--------TAGNVVNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-----cc--------cccceEEecCcCCHHHHHHHHHhCC
Confidence 3445455422222234566888887665443 34444331 01 123455555543 2 24554455
Q ss_pred cceEEec----CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHH
Q 009851 386 IACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVD 452 (524)
Q Consensus 386 v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~ 452 (524)
+ ||.- |--+++.||+++|+|+|+....+ ....+.+ +.|..+++ -+.++|+++++
T Consensus 309 v--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~~ 366 (405)
T PRK10125 309 A--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLSK 366 (405)
T ss_pred E--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhccC
Confidence 5 6653 33568999999999999987765 3333433 67888865 46788887543
No 121
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.08 E-value=0.064 Score=49.41 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=24.7
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEe
Q 009851 13 AQGHVIPLLEFSQCLAKHGFRVTFVN 38 (524)
Q Consensus 13 ~~GH~~p~l~LA~~L~~rGH~Vt~~~ 38 (524)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 66999999999999999999999988
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.81 E-value=0.0057 Score=51.92 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=50.2
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEec---CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSH---CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItH---gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~ 441 (524)
..|+.+.+|+++. ++++..++....+. +-.+++.|++++|+|+|+.+.. ....++. .+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-C-----
Confidence 5799999999655 68888888655442 2348999999999999997761 2223333 3777666 2
Q ss_pred CCHHHHHHHHHHHhcC
Q 009851 442 ITREEIKNKVDQVLGN 457 (524)
Q Consensus 442 ~t~~~l~~ai~~~l~~ 457 (524)
-+.+++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3899999999999865
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.80 E-value=0.0068 Score=60.54 Aligned_cols=109 Identities=13% Similarity=0.233 Sum_probs=76.2
Q ss_pred hcCCeeEEeccChhhh---hcCCCcceEEecC-------C------hhhHHHHHHcCCceeccCcccchhhhHHhhcccc
Q 009851 365 VAARGQMISWAPQLRV---LNHPSIACFLSHC-------G------WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFW 428 (524)
Q Consensus 365 ~~~n~~v~~~vpq~~l---L~~~~v~~~ItHg-------G------~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~l 428 (524)
..+|+.+.+|+|+.++ |+. +.+++...- . -+-+.|.+++|+|+|+. ++...+..|++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 3578989999999865 433 333322211 1 12277889999999985 455677888885
Q ss_pred ceeeEEecCCCCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHH
Q 009851 429 KVGLKFDRDEGGIITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQ 490 (524)
Q Consensus 429 G~G~~~~~~~~~~~t~~~l~~ai~~~l~~~--~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 490 (524)
++|+.++ +.+++.+++.++..++ .|++|++++++++++ |.--.++++.++.
T Consensus 279 ~~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9999984 5678999998865322 589999999999997 6655555555443
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.76 E-value=0.025 Score=48.28 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=65.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
||++++.....| ...+++.|.++||+|++++.....+..... .+++++.++... ......+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~------k~~~~~~-- 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPR------KSPLNYI-- 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCC------CccHHHH--
Confidence 577777665555 568899999999999999996654333222 488888885321 1122222
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECCCch-h--HHHHHHHcC-CceEEEcc
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIG-W--SMEIAKKMN-VRGAVFWP 136 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~-~--~~~~A~~lg-iP~i~~~~ 136 (524)
.. . .+..++++ .+||+|.+....+ + +..++...| +|.+....
T Consensus 62 --~~-~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 --KY-F-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --HH-H-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11 1 34555555 8999998776554 2 344567888 89986544
No 125
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.71 E-value=0.023 Score=57.57 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=60.6
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEec--CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGII 442 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItH--gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~ 442 (524)
.+++.+.++.++. .+++.+++-.+.++ |...++.||+++|+|+|+..... .....+.+. ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 4567777776665 68877777444454 33568999999999999864431 134445553 67777753 5
Q ss_pred CHHHHHHHHHHHhcCHH
Q 009851 443 TREEIKNKVDQVLGNQD 459 (524)
Q Consensus 443 t~~~l~~ai~~~l~~~~ 459 (524)
+.+++.++|.+++.|++
T Consensus 331 d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 331 DIEALAEAIIELLNDPK 347 (372)
T ss_pred cHHHHHHHHHHHHcCHH
Confidence 79999999999999874
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.71 E-value=0.49 Score=45.32 Aligned_cols=104 Identities=21% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCcC--hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHH-HHHHHHHHh
Q 009851 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG-KLIEKCLQV 88 (524)
Q Consensus 12 ~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (524)
+-.-|+.-+-.|..+|.++||+|.+.+-+.. .+.+... ||.+..+...-. ..+. +++....+
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g~-----~tl~~Kl~~~~eR- 72 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHGG-----VTLKEKLLESAER- 72 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccCC-----ccHHHHHHHHHHH-
Confidence 4456899999999999999999988776532 3344443 788877764221 1222 22222211
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccch
Q 009851 89 MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (524)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~ 138 (524)
.-.+.+++.+ .+||+.+. -..+-...+|..+|+|.+.+.-..
T Consensus 73 -~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 -VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 1124455555 89999999 566789999999999999986543
No 127
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.55 E-value=0.085 Score=52.25 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=75.6
Q ss_pred CceEEEeecCC---CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEe--ccChh-hhhc
Q 009851 309 SSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMIS--WAPQL-RVLN 382 (524)
Q Consensus 309 ~~vV~vs~GS~---~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~--~vpq~-~lL~ 382 (524)
++.|.+..|+. -..+.+.+.++++.+...+.++++..+.. .+...-+.+.+..+. ..+.+ -++|. .+++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~ 253 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEKQRAERIAEALPG-AVVLPKMSLAEVAALLA 253 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHhhCCC-CeecCCCCHHHHHHHHH
Confidence 45666666654 34678889999999866677777654432 111111222222222 22333 34555 7886
Q ss_pred CCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceee-EEecCCCCCCCHHHHHHHHHHHh
Q 009851 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL-KFDRDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 383 ~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~-~~~~~~~~~~t~~~l~~ai~~~l 455 (524)
++++ +|+. -.|.++=|.+.|+|+|++ ++ +.+..+..= +|-.. .+..+.-..++.+++.++|.++|
T Consensus 254 ~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 254 GADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred cCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 6665 9985 568899999999999874 22 111111100 11111 11111125689999999998875
No 128
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.043 Score=56.51 Aligned_cols=171 Identities=14% Similarity=0.133 Sum_probs=103.1
Q ss_pred CCCceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhh------cCCeeEEeccChhh-
Q 009851 307 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV------AARGQMISWAPQLR- 379 (524)
Q Consensus 307 ~~~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~------~~n~~v~~~vpq~~- 379 (524)
+++.+||+||+......++.+..-.+-|+..+-.++|..+++.. +.....+++.. +.|.++.+-.|..+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----AEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----HHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 34779999999999999999999999998999999999877521 22222222211 35666666666553
Q ss_pred --hhcCCCcceEE---ecCChhhHHHHHHcCCceeccCcccchhh--hHHhhccccceeeEEecCCCCCCCHHHHHHHHH
Q 009851 380 --VLNHPSIACFL---SHCGWNSTMEGVSNGIPFLCWPYFGDQFL--NERYICDFWKVGLKFDRDEGGIITREEIKNKVD 452 (524)
Q Consensus 380 --lL~~~~v~~~I---tHgG~gs~~Eal~~GvP~v~~P~~~DQ~~--na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~ 452 (524)
=++.+++ |. --||..|+.|+|+.|||+|.++ ++||. |+.-+...+|+-..+.. -.++=+..++.
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~av~ 573 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVEKAVA 573 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHHHHH
Confidence 3333444 55 4699999999999999998765 67763 33333322355544422 23455556654
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 453 QVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 453 ~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
--. | |..+.+.+.+++.. ..-++--+.+.+.+.+|...
T Consensus 574 ~g~-d---ral~q~~r~~l~~~--r~tspL~d~~~far~le~~y 611 (620)
T COG3914 574 FGS-D---RALRQQVRAELKRS--RQTSPLFDPKAFARKLETLY 611 (620)
T ss_pred hcc-c---HHHHHhhHHHHHhc--cccCcccCHHHHHHHHHHHH
Confidence 332 2 22233333333331 12244445666666666653
No 129
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.73 E-value=0.02 Score=49.68 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHH
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (524)
.-+..|+++|+++||+|++++.......-+. ...++.+..++-..... .......+ ..+..++
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRPW--PLRLLRFL--------RRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SSS--GGGHCCHH--------HHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccch--hhhhHHHH--------HHHHHHH
Confidence 3467899999999999999997655442211 11467777776222111 00111111 1223333
Q ss_pred HHHhcCCCCCccEEEECCCch-hHHHHHH-HcCCceEEEcc
Q 009851 98 EEINSREDEKIDCFIADGNIG-WSMEIAK-KMNVRGAVFWP 136 (524)
Q Consensus 98 ~~l~~~~~~~~D~vI~D~~~~-~~~~~A~-~lgiP~i~~~~ 136 (524)
.... .+||+|.+..... ....++. ..++|++....
T Consensus 68 -~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 68 -AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1122 7999999886433 3334444 88999988553
No 130
>PRK14098 glycogen synthase; Provisional
Probab=95.66 E-value=0.29 Score=51.62 Aligned_cols=131 Identities=14% Similarity=0.057 Sum_probs=74.5
Q ss_pred CceEEEeecCCCC-CCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChh---hHHhhcCCeeEEeccChh---hhh
Q 009851 309 SSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEG---FQERVAARGQMISWAPQL---RVL 381 (524)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~---~~~~~~~n~~v~~~vpq~---~lL 381 (524)
+.++++..|.... ...+.+.+.+..+...+.+++.. +.+. ..+.+. +.++.++|+.+...++.. .++
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lviv-G~G~-----~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVIC-GSGD-----KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEE-eCCC-----HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH
Confidence 3356677776532 23333333333333345565544 3320 111122 223446788888888875 578
Q ss_pred cCCCcceEEecC---Ch-hhHHHHHHcCCceeccCccc--chhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHh
Q 009851 382 NHPSIACFLSHC---GW-NSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 382 ~~~~v~~~ItHg---G~-gs~~Eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l 455 (524)
+.+++ |+.-. |. .+.+||+++|+|.|+....+ |... ....+. +.|..++. -+.+++.++|.+++
T Consensus 380 a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~-----~d~~~la~ai~~~l 449 (489)
T PRK14098 380 AGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHD-----YTPEALVAKLGEAL 449 (489)
T ss_pred HhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCC-----CCHHHHHHHHHHHH
Confidence 66666 66532 22 37789999999988766533 2111 111222 67877753 57999999999876
No 131
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.56 E-value=0.5 Score=49.78 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=50.8
Q ss_pred cCCeeEEeccChh-hhhcCCCcceEEec---CC-hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 366 AARGQMISWAPQL-RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~~~~v~~~ItH---gG-~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+|+.+.++..+. .+|+..++ ||.. -| .+++.||+++|+|+|+... ..+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC----
Confidence 4778888886544 67877776 7753 34 5699999999999997665 3456666664 77888764
Q ss_pred CCCHHHHHHHH
Q 009851 441 IITREEIKNKV 451 (524)
Q Consensus 441 ~~t~~~l~~ai 451 (524)
-+.+.+.+++
T Consensus 523 -~D~~aLa~ai 532 (578)
T PRK15490 523 -AQTVNLDQAC 532 (578)
T ss_pred -CChhhHHHHH
Confidence 2344454444
No 132
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.19 E-value=1.7 Score=41.97 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=65.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcChhhHHHhhhcCCCCCCCeEE-EecCCCCCCCCCcccHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 81 (524)
||+++-..+.|++.-+..+.++|.++. -+|++++.+.+.+.++.. +.++- +.++... ....+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~~----~~~~~--- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKKH----GKLGL--- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCcc----cccch---
Confidence 688888899999999999999999975 899999999888777654 34433 3332111 00011
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceE
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGA 132 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i 132 (524)
..+..++..++. .++|+++-=........++...+++..
T Consensus 66 ---------~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 66 ---------GARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred ---------HHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 123345555554 789999865554444445555565554
No 133
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.97 E-value=0.2 Score=44.23 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=58.2
Q ss_pred hCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCc
Q 009851 29 KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKI 108 (524)
Q Consensus 29 ~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (524)
++||+|++++........ +|++.+.+...-............++.......... ..+..|++++ ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~-~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVA-RAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHH-HHHHHHHHcC-CCC
Confidence 589999999965544332 378877776422222122222222333333333333 3334445544 899
Q ss_pred cEEEECCCchhHHHHHHHc-CCceEEEc
Q 009851 109 DCFIADGNIGWSMEIAKKM-NVRGAVFW 135 (524)
Q Consensus 109 D~vI~D~~~~~~~~~A~~l-giP~i~~~ 135 (524)
|+||..+-.-.++-+-+.+ ++|.+.+.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999998777889999999 89999865
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=94.67 E-value=1.7 Score=43.10 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=55.0
Q ss_pred hcCCeeEE---eccChh---hhhcCCCcceEEec---CC-hhhHHHHHHcCCceeccCc------ccch------hhhHH
Q 009851 365 VAARGQMI---SWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPY------FGDQ------FLNER 422 (524)
Q Consensus 365 ~~~n~~v~---~~vpq~---~lL~~~~v~~~ItH---gG-~gs~~Eal~~GvP~v~~P~------~~DQ------~~na~ 422 (524)
+++++.+. +++++. ++++.+++ ||.- =| ..++.||+++|+|+|+--. .+|+ ..+..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45678777 455654 66766666 7753 24 4578999999999998533 2333 22222
Q ss_pred hhc--cccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 423 YIC--DFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 423 rv~--~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
... +. |.|..++ ..+++++.++|.+++..
T Consensus 277 ~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEH-GQKWKIH-----KFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCccc-Cceeeec-----CCCHHHHHHHHHHHHhc
Confidence 222 22 6666663 37999999999999543
No 135
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.44 E-value=3.3 Score=41.19 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=68.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHhhhcCCCCCCCeEE-EecCCCCCCCCCcccHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 81 (524)
||+|+-..+.|++.-...+.+.|.+. +.+|++++.+.+.+.++.. +.++- +.++.. .. ...+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--~~--~~~~--- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG--HG--ALEL--- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc--cc--chhh---
Confidence 68999999999999999999999996 8999999998877777654 34432 222211 00 0000
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
....++.+.++. .++|++|.-........++...|+|.-+
T Consensus 66 ---------~~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 ---------TERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---------hHHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 012344555555 7999999765555566667777877643
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.30 E-value=2.6 Score=42.10 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=71.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHhhhcCCCCCCCeE-EEecCCCCCCCCCcccHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIH-LVSIPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 81 (524)
||+++-..+.|++.-...+.+.|.++ +.+|++++.+.+.+.++.. +.++ ++.++..... .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~----~~~~~- 67 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAK----AGERK- 67 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhc----chHHH-
Confidence 58888889999999999999999996 8999999999888877654 3554 3444321110 00000
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
+. ....++..++. .++|++|.=.....+..++...|.|.-+
T Consensus 68 ---~~-----~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 68 ---LA-----NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HH-----HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 10 11234455555 7999998654445667788888988755
No 137
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.93 E-value=1.2 Score=45.85 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=57.6
Q ss_pred hhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeE-EecCCCCCCCHHHHHHHHHHHhcC
Q 009851 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK-FDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 379 ~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~-~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
.++++.++ +|.. =.=++.-|+..|||.+.++. | +.....+.. +|.... ++. ..++.++|.+.+.++++|
T Consensus 323 ~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~---~~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDI---RHLLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEech---hhCCHHHHHHHHHHHHhC
Confidence 78855554 8753 23367778999999999888 3 333333445 677744 554 568899999999999988
Q ss_pred H-HHHHHHHHHHHHHHh
Q 009851 458 Q-DFKARALELKEKAMS 473 (524)
Q Consensus 458 ~-~~r~~a~~l~~~~~~ 473 (524)
. .+++..++--++.|.
T Consensus 393 r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 393 LPALNARLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5 456555555555544
No 138
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=93.79 E-value=0.06 Score=42.73 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=42.1
Q ss_pred chhhHhhhcCCCCceEEEeecCCCCC---CH--HHHHHHHHHHhcCCCCEEEEEcCC
Q 009851 297 SNCLKWLDQQQPSSVVYVSFGSFTIL---DQ--VQFQELALGLELCKRPFLWVVRPD 348 (524)
Q Consensus 297 ~~l~~~l~~~~~~~vV~vs~GS~~~~---~~--~~~~~l~~al~~~~~~~iw~~~~~ 348 (524)
..+.+|+-..+.++-|.+|+||.... .. ..+..++++++.++..++.++...
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 34457898888899999999998543 22 478889999999999999999765
No 139
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.59 E-value=1.6 Score=37.09 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD 67 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 67 (524)
|++.+|++.+.++-+|-.-..-++..|.++|++|+++......+.+.+... ..+.+++.++-
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-----~~~~d~V~lS~ 62 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-----ETDADAILVSS 62 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----HcCCCEEEEcC
Confidence 889999999999999999999999999999999999998765444433321 12555555553
No 140
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.85 E-value=0.73 Score=40.89 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=58.4
Q ss_pred cCCCccCHHHHHHHHHHH-HhCC-CEEEEEeCCcCh--hhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHH
Q 009851 10 PAPAQGHVIPLLEFSQCL-AKHG-FRVTFVNTDYNH--KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (524)
Q Consensus 10 ~~~~~GH~~p~l~LA~~L-~~rG-H~Vt~~~~~~~~--~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (524)
-.++.||..-|+.|.+.+ .++. ++..+++..... +.+.+.... .....++..++...... ..........
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~---~~~~~~~~~~~r~r~v~---q~~~~~~~~~ 77 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS---SSKRHKILEIPRAREVG---QSYLTSIFTT 77 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh---ccccceeeccceEEEec---hhhHhhHHHH
Confidence 347889999999999999 4444 555555554332 222211100 00111344443211111 1111111111
Q ss_pred HHhccHHHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHc------CCceEEEcc
Q 009851 86 LQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKM------NVRGAVFWP 136 (524)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~l------giP~i~~~~ 136 (524)
....-..+.-+.+ .+||+||+..-.. ....+|..+ |.+.|.+-+
T Consensus 78 l~~~~~~~~il~r-------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 78 LRAFLQSLRILRR-------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHHHHHHH-------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1111112222222 5899999998655 467778888 999988743
No 141
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.37 E-value=1.1 Score=39.13 Aligned_cols=102 Identities=21% Similarity=0.169 Sum_probs=52.0
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHH
Q 009851 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGK 92 (524)
Q Consensus 13 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (524)
..|=-.-+..|+++|+++||+|++++......... . ........... .......... ....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-----------~-~~~~~~~~~~~--~~~~~~~~~~-----~~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-----------E-LVKIFVKIPYP--IRKRFLRSFF-----FMRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-----------T-EEEE---TT-S--STSS--HHHH-----HHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-----------h-ccceeeeeecc--cccccchhHH-----HHHH
Confidence 45777889999999999999999998765433221 1 11111100000 0011111111 1123
Q ss_pred HHHHHHHHhcCCCCCccEEEECCCch-hHHHHHHHcCCceEEEccchHH
Q 009851 93 LEELIEEINSREDEKIDCFIADGNIG-WSMEIAKKMNVRGAVFWPSSAA 140 (524)
Q Consensus 93 ~~~ll~~l~~~~~~~~D~vI~D~~~~-~~~~~A~~lgiP~i~~~~~~~~ 140 (524)
+..++++ .++|+|-+..... +....+-. ++|.+........
T Consensus 72 ~~~~i~~------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~~ 113 (177)
T PF13439_consen 72 LRRLIKK------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPYF 113 (177)
T ss_dssp HHHHHHH------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH-
T ss_pred HHHHHHH------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCcc
Confidence 5556665 6899995555433 33333434 9999988766553
No 142
>PHA01630 putative group 1 glycosyl transferase
Probab=92.29 E-value=8.5 Score=38.27 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=51.5
Q ss_pred eccChh---hhhcCCCcceEEe--c-CC-hhhHHHHHHcCCceeccCccc--chhh---hHHhhccc----------cce
Q 009851 373 SWAPQL---RVLNHPSIACFLS--H-CG-WNSTMEGVSNGIPFLCWPYFG--DQFL---NERYICDF----------WKV 430 (524)
Q Consensus 373 ~~vpq~---~lL~~~~v~~~It--H-gG-~gs~~Eal~~GvP~v~~P~~~--DQ~~---na~rv~~~----------lG~ 430 (524)
.++|+. .+++.+++ |+. + .| ..++.||+++|+|+|+.-..+ |... |+..+... -++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 346765 46766666 552 2 32 558999999999999976543 3221 11111100 023
Q ss_pred eeEEecCCCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHH
Q 009851 431 GLKFDRDEGGIITREEIKNKVDQVLGN---QDFKARALELKEKA 471 (524)
Q Consensus 431 G~~~~~~~~~~~t~~~l~~ai~~~l~~---~~~r~~a~~l~~~~ 471 (524)
|..++ .+.+++.+++.++|.| +.++++.+.-+...
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~ 311 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILY 311 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 44432 2678888888888886 44554444433333
No 143
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=91.93 E-value=2.3 Score=33.08 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=41.8
Q ss_pred cCChhhHHHHHHcCCceeccCcccchhhhHHhhccccc-eeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHH
Q 009851 392 HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKAR 463 (524)
Q Consensus 392 HgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG-~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~ 463 (524)
+|-..-+.|++++|+|+|.-+. ......+.+ | -++.. . +.+++.++|..+++|++.+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ 68 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRR 68 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHH
Confidence 4556689999999999997655 333333333 4 34444 2 899999999999999864443
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=91.60 E-value=9.1 Score=43.15 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=67.8
Q ss_pred cCCeeEEeccChh---hhhcCCCcceEEec----CChhhHHHHHHcCCceeccCccc--chhhh--HHhh-ccccceeeE
Q 009851 366 AARGQMISWAPQL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFG--DQFLN--ERYI-CDFWKVGLK 433 (524)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~~~~v~~~ItH----gG~gs~~Eal~~GvP~v~~P~~~--DQ~~n--a~rv-~~~lG~G~~ 433 (524)
.+++.+..+.+.. .+++.+++ ||.- +-..+.+||+++|+|.|+....+ |-..+ ...+ .+ -+.|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEE
Confidence 3578888887765 57866666 7753 12347999999999998866543 22111 1111 12 256777
Q ss_pred EecCCCCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 434 FDRDEGGIITREEIKNKVDQVLG----NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 434 ~~~~~~~~~t~~~l~~ai~~~l~----~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
++. -+.+++.++|.+++. |+..+++.. +.. +.+.-+.....+...+..+..+
T Consensus 913 f~~-----~D~eaLa~AL~rAL~~~~~dpe~~~~L~---~~a---m~~dFSWe~~A~qYeeLY~~ll 968 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFNYYKRKPEVWKQLV---QKD---MNIDFSWDSSASQYEELYQRAV 968 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHHHhccCHHHHHHHH---HHH---HHhcCCHHHHHHHHHHHHHHHH
Confidence 754 578899999988874 554433332 221 1224454555555554444443
No 145
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.79 E-value=0.56 Score=42.63 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=29.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
+|||+.---+. +---+..|+++|.+.||+|+++.+...++..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 35666664444 4455778999997788999999998876554
No 146
>PRK14099 glycogen synthase; Provisional
Probab=90.72 E-value=6.9 Score=41.24 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 1 MSRPRVLVMPAP------AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 1 m~~~~il~~~~~------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
|+++||+|++.- +.|=-.-.-.|.++|+++||+|.++++..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 889999988721 12333446688999999999999999965
No 147
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.28 E-value=2.1 Score=45.38 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=57.5
Q ss_pred CCeeEEeccC--hh-hhhcCCCcceEEecC---ChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 367 ARGQMISWAP--QL-RVLNHPSIACFLSHC---GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 367 ~n~~v~~~vp--q~-~lL~~~~v~~~ItHg---G~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.++.+.++.+ +. ..+.+.++ +|.=+ |.++..||+.+|+|+| .......|++. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 5677778888 33 67755555 88766 7889999999999999 33345556663 6676662
Q ss_pred CCCHHHHHHHHHHHhcCHH
Q 009851 441 IITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~~ 459 (524)
+..+|.++|..+|.+.+
T Consensus 474 --d~~~l~~al~~~L~~~~ 490 (519)
T TIGR03713 474 --DISELLKALDYYLDNLK 490 (519)
T ss_pred --CHHHHHHHHHHHHhCHH
Confidence 68999999999999873
No 148
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=89.86 E-value=13 Score=37.29 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=26.4
Q ss_pred CccCHHHHHHHHHHHHhC-CCEEEEEeCCc
Q 009851 13 AQGHVIPLLEFSQCLAKH-GFRVTFVNTDY 41 (524)
Q Consensus 13 ~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~ 41 (524)
=+|++--+.+|||.|+++ |++|++.+.+.
T Consensus 10 NfGDIGVcWRLArqLa~e~g~~VrLwvDdl 39 (374)
T PF10093_consen 10 NFGDIGVCWRLARQLAAEHGQQVRLWVDDL 39 (374)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCH
Confidence 469999999999999998 99999999864
No 149
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.79 E-value=9.7 Score=31.29 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=64.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
||++.+.++..|.....-++..|.++|++|..+......+.+.+... ..+.+++.++-.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-----~~~pdvV~iS~~~~~~------------ 63 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-----EEDADAIGLSGLLTTH------------ 63 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----HcCCCEEEEecccccc------------
Confidence 57899999999999999999999999999988876544333322211 1244444444222111
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
...+.++++.+++..+.++-+++...........++.+|+-.+.
T Consensus 64 -----~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 64 -----MTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred -----HHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEE
Confidence 12345555555553211344566665444334578888875544
No 150
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.68 E-value=23 Score=35.19 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=72.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (524)
+||+++-...-|++.=...+-+.|.++. .++++++...+.+.++.. +.++-+..-.. .. ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~--~~---~~---- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK--KK---KG---- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc--cc---cc----
Confidence 6899999889999999999999999985 999999999888877654 23332221110 00 00
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
........+.+.+++ .++|+||.=....-...++..+++|.-.
T Consensus 65 ------~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ------LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 112234556666665 7899998776666666777788888765
No 151
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.95 E-value=4.9 Score=37.76 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHH
Q 009851 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (524)
Q Consensus 16 H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (524)
|---+..|+++|. .+++|+++.+..+++.+.... .....++...+.. ........+.... .-.+..
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl----Tl~~Plr~~~~~~--~~~av~GTPaDCV-------~lal~~ 77 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSL----TLHEPLRVRQVDN--GAYAVNGTPADCV-------ILGLNE 77 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc----ccccCceeeEecc--ceEEecCChHHHH-------HHHHHH
Confidence 3444567788888 999999999988776553221 1112333333332 0000111222211 112344
Q ss_pred HHHHHhcCCCCCccEEEECCC----------ch---hHHHHHHHcCCceEEEccc
Q 009851 96 LIEEINSREDEKIDCFIADGN----------IG---WSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 96 ll~~l~~~~~~~~D~vI~D~~----------~~---~~~~~A~~lgiP~i~~~~~ 137 (524)
++++ .+||+||+... ++ +++.=|..+|||.|.++..
T Consensus 78 l~~~------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 78 LLKE------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred hccC------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 4444 56999997432 22 3445578899999998765
No 152
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=84.47 E-value=8.1 Score=38.00 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=85.2
Q ss_pred cccEEEEcCCcccccccccCCCc-ccccccccccCCCCCCCCCCccCcchhhHh---hhcCCCCceEEEeecCC---CCC
Q 009851 250 AVNFHFCNSTYELESEAFTTFPE-LLPIGPLLASNRLGNTAGYFWCEDSNCLKW---LDQQQPSSVVYVSFGSF---TIL 322 (524)
Q Consensus 250 ~~~~~l~ns~~~le~~~~~~~~~-v~~VGp~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~vV~vs~GS~---~~~ 322 (524)
..|++++..+..+. ..+| +...|+++.-.+.. ..+.-.+| +... +++.+-|-.|.- ...
T Consensus 97 ~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~~~~--------l~~a~~~~~~~~~~l-~~p~~avLIGG~s~~~~~ 162 (311)
T PF06258_consen 97 PFDLVIVPEHDRLP-----RGPNVLPTLGAPNRITPER--------LAEAAAAWAPRLAAL-PRPRVAVLIGGDSKHYRW 162 (311)
T ss_pred ccCEEEECcccCcC-----CCCceEecccCCCcCCHHH--------HHHHHHhhhhhhccC-CCCeEEEEECcCCCCccc
Confidence 45778887775431 1234 45677777554321 11111223 3322 244565555633 235
Q ss_pred CHHHHHH----HHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhc--CCeeEEe---ccChhhhhcCCCcceEEecC
Q 009851 323 DQVQFQE----LALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMIS---WAPQLRVLNHPSIACFLSHC 393 (524)
Q Consensus 323 ~~~~~~~----l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~--~n~~v~~---~vpq~~lL~~~~v~~~ItHg 393 (524)
+.+.... +.+.++..+.++..+.+..-. ...-..+.+... ..+.+.+ .=|+..+|+.++. .|||=-
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp----~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~-i~VT~D 237 (311)
T PF06258_consen 163 DEEDAERLLDQLAALAAAYGGSLLVTTSRRTP----PEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADA-IVVTED 237 (311)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCc----HHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCE-EEEcCc
Confidence 5653333 334445555566655554411 111112222222 2232322 2367788877765 455555
Q ss_pred ChhhHHHHHHcCCceeccCcccchhh----hHHhhccccceeeEEe
Q 009851 394 GWNSTMEGVSNGIPFLCWPYFGDQFL----NERYICDFWKVGLKFD 435 (524)
Q Consensus 394 G~gs~~Eal~~GvP~v~~P~~~DQ~~----na~rv~~~lG~G~~~~ 435 (524)
-.+=+.||+..|+|+.++|.-. +.. -.+.+++. |+-..++
T Consensus 238 SvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 238 SVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred cHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECC
Confidence 5777899999999999999876 322 12334453 6665554
No 153
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.28 E-value=9.7 Score=36.26 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=53.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChh-hHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK-RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (524)
||+++. +.|. -..|++.|.++||+|+..+...... .+...+ ....+. ..+
T Consensus 2 ~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g--------~~~v~~--g~l-------------- 52 (256)
T TIGR00715 2 TVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ--------ALTVHT--GAL-------------- 52 (256)
T ss_pred eEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC--------CceEEE--CCC--------------
Confidence 455554 3343 6789999999999999888765432 222110 111110 000
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchh------HHHHHHHcCCceEEEc
Q 009851 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW------SMEIAKKMNVRGAVFW 135 (524)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~------~~~~A~~lgiP~i~~~ 135 (524)
-...+.+++++ .++|+||--.+-++ +..+++.+|||++.+-
T Consensus 53 -----~~~~l~~~l~~------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 -----DPQELREFLKR------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -----CHHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 11224555665 78997764333222 4678999999999964
No 154
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=83.01 E-value=12 Score=37.30 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=70.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEe-cCCCCCCCCCcccHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVS-IPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~ 81 (524)
||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.++-+. ++.. .. ...+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~--~~--~~~~--- 66 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG--HG--ALEI--- 66 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc--cc--hhhh---
Confidence 79999999999999999999999995 8999999998888877665 3554332 2211 00 0000
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
....+++..++. .++|++|.=....-...++...|+|.-+
T Consensus 67 ---------~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---------GERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---------HHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112345555655 7999988654445566677777888654
No 155
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=82.28 E-value=13 Score=37.37 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=71.7
Q ss_pred CC--CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHhhhcCCCCCCCeEE-EecCCCCCCCCCc
Q 009851 1 MS--RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDR 75 (524)
Q Consensus 1 m~--~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~ 75 (524)
|. ..||+++-....|++.-...+.+.|.++ +.+|++++.+.+.+.++.. +.++- +.++...
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~~------ 66 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNKK------ 66 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEecccc------
Confidence 54 4689999999999999999999999997 8999999999888777554 35543 3333210
Q ss_pred ccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
......+ ..+..++..++. .++|++|.=........++...|.|..+
T Consensus 67 ~~~~~~~--------~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 AGASEKI--------KNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ccHHHHH--------HHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0000000 122344556655 7999999554444455667777877755
No 156
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=81.85 E-value=9.6 Score=35.96 Aligned_cols=112 Identities=18% Similarity=0.100 Sum_probs=59.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCC--CCCCCCCcccHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD--GMEPWEDRNDLGKLI 82 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~ 82 (524)
|||+.---+ =|---+..|+++|.+.| +|+++.+...++.+.... .....+++..++. +.........+....
T Consensus 2 ~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~~~v~GTPaDcv 75 (244)
T TIGR00087 2 KILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL----TLFEPLRVGQVKVKNGAHIYAVDGTPTDCV 75 (244)
T ss_pred eEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc----CCCCCeEEEEeccCCCccEEEEcCcHHHHH
Confidence 455444222 12234667899999988 899999987766553321 1223455555541 111011112222222
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEECCC----------ch---hHHHHHHHcCCceEEEcc
Q 009851 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGN----------IG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~----------~~---~~~~~A~~lgiP~i~~~~ 136 (524)
... +. .+.. .+||+||+... ++ ++..-|..+|||.+.++.
T Consensus 76 ~~g-------l~----~l~~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 76 ILG-------IN----ELMP---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHH-------HH----Hhcc---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 221 22 2222 57899996542 22 244556778999999874
No 157
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=81.45 E-value=73 Score=33.30 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred hHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 009851 397 STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 466 (524)
Q Consensus 397 s~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~ 466 (524)
++.||+++|+|+++. ++-.=+..+++ .-.|..+++ ..-....+++++.++.+|++++.+..+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 689999999999875 33445566666 367777765 112234799999999999988665543
No 158
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.24 E-value=8.1 Score=37.09 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHcCCceeccCcccchhh--hHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 009851 400 EGVSNGIPFLCWPYFGDQFL--NERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALEL 467 (524)
Q Consensus 400 Eal~~GvP~v~~P~~~DQ~~--na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l 467 (524)
.++--|||+|.+|-.+-|+. -|.|-..-+|..+.+-. -.+..-..+..++|.|+++..+++.-
T Consensus 325 QavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~~~q~ll~dp~r~~air~n 389 (412)
T COG4370 325 QAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQAVQELLGDPQRLTAIRHN 389 (412)
T ss_pred HhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHHHHHHHhcChHHHHHHHhc
Confidence 35678999999999999954 45554444677776643 23444445555699999988877743
No 159
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=81.22 E-value=7.1 Score=35.41 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcCh-hhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHH
Q 009851 17 VIPLLEFSQCLAKHGFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (524)
Q Consensus 17 ~~p~l~LA~~L~~rGH~Vt~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (524)
+.-...+.+.++++|-+|.|+.+.... ..++...... ...-+.-..++..+..... ....+..+...-...++.
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~--~~~~i~~rw~~G~LTN~~~---~~~~~~~~~~~~~~~~~k 116 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT--GSFYVNGRWLGGTLTNWKT---IRKSIKRLKKLEKEKLEK 116 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc--CCeeecCeecCCcCCCHHH---HHHHHHHHHHHHHHHHHH
Confidence 344455667778889999999998543 3333321100 0011112233333332211 111111111111122333
Q ss_pred HHHHHhcCCCCCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHH
Q 009851 96 LIEEINSREDEKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAAS 141 (524)
Q Consensus 96 ll~~l~~~~~~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~ 141 (524)
.+..+.... ..||+|| .|+..- .+..-|.++|||.|.+.-+.+.+
T Consensus 117 ~~~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~~~ 163 (193)
T cd01425 117 NLGGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDP 163 (193)
T ss_pred hcccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCC
Confidence 333332222 6789777 555433 67888999999999987665433
No 160
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=80.73 E-value=14 Score=28.55 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHH
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (524)
++.+++.|.+.|+++. +++.....+++. |+....+......+ .+ .+++.
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~---------Gi~~~~~~~ki~~~-----------------~~---~i~~~ 50 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREA---------GLPVKTLHPKVHGG-----------------IL---AILDL 50 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHC---------CCcceeccCCCCCC-----------------CH---HHHHH
Confidence 4689999999999883 444555666654 55442111000000 01 23344
Q ss_pred HhcCCCCCccEEEECCC---------chhHHHHHHHcCCceE
Q 009851 100 INSREDEKIDCFIADGN---------IGWSMEIAKKMNVRGA 132 (524)
Q Consensus 100 l~~~~~~~~D~vI~D~~---------~~~~~~~A~~lgiP~i 132 (524)
+.. .++|+||..+. ......+|...|||++
T Consensus 51 i~~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 51 IKN---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred hcC---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 443 89999997543 1134567888899986
No 161
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.57 E-value=18 Score=30.77 Aligned_cols=110 Identities=20% Similarity=0.198 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHH
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (524)
|++.||++.+.+.-||=.-.--+++.|++.|.+|.........+.+.... ...+.+.+-++.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA-----~~~dv~vIgvSsl~g~--------- 75 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA-----VEEDVDVIGVSSLDGG--------- 75 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH-----HhcCCCEEEEEeccch---------
Confidence 46899999999999999999999999999999999887765543333221 1134555554422111
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch-hHHHHHHHcCCceEE
Q 009851 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG-WSMEIAKKMNVRGAV 133 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~-~~~~~A~~lgiP~i~ 133 (524)
....+..+++.+++.+ .....+++-...+ .-...-+++|+--+.
T Consensus 76 --------h~~l~~~lve~lre~G-~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 76 --------HLTLVPGLVEALREAG-VEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred --------HHHHHHHHHHHHHHhC-CcceEEeecCccCchhHHHHHHhCcceee
Confidence 1222445555555433 3333445665555 445556677866654
No 162
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=79.28 E-value=25 Score=33.36 Aligned_cols=112 Identities=12% Similarity=0.133 Sum_probs=57.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC-CC--CCCCCCcccHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP-DG--MEPWEDRNDLGKL 81 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-~~--~~~~~~~~~~~~~ 81 (524)
|||+.---+. |---+..|+++|.+ +|+|+++.+...++...... .....++...+. ++ .........+...
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si----t~~~pl~~~~~~~~~~~~~~~~v~GTPaDc 75 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI----TIYEPIIIKEVKLEGINSKAYSISGTPADC 75 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc----cCCCCeEEEeeccCCCCccEEEECCcHHHH
Confidence 5666553322 22237788888865 68999999987765432211 111234444433 11 1001111222222
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECC----------Cch---hHHHHHHHcCCceEEEcc
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADG----------NIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~----------~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
.... +..+.. .+||+||+.. +++ +++.-|..+|||.|.++.
T Consensus 76 V~la-----------l~~l~~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 76 VRVA-----------LDKLVP---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred HHHH-----------HHHhcC---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 2211 122222 5799999643 233 345556788999999875
No 163
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.95 E-value=11 Score=34.59 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=32.0
Q ss_pred CEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 4 PRVLVMPAP--AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~~~--~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
++|++++.| +.|...-.-+|+-.|+++|+.|.++-.+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 567777766 5699999999999999999999998766
No 164
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=78.00 E-value=9.7 Score=39.71 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=56.8
Q ss_pred eccChhh---hhcCCCcceEEe---cCChh-hHHHHHHcCCc----eeccCcccchhhhHHhhccccceeeEEecCCCCC
Q 009851 373 SWAPQLR---VLNHPSIACFLS---HCGWN-STMEGVSNGIP----FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (524)
Q Consensus 373 ~~vpq~~---lL~~~~v~~~It---HgG~g-s~~Eal~~GvP----~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~ 441 (524)
+.+|+.+ +++.+++ |+. +=|+| ++.||+++|+| +|+--+.+ .+..+ +-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC-----
Confidence 4566764 4656666 665 33644 78899999999 65544443 22222 34667754
Q ss_pred CCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHh
Q 009851 442 ITREEIKNKVDQVLGNQ--DFKARALELKEKAMS 473 (524)
Q Consensus 442 ~t~~~l~~ai~~~l~~~--~~r~~a~~l~~~~~~ 473 (524)
.+.++++++|.++|+++ +-+++.+++.+.+++
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~ 440 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK 440 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999744 456666666666543
No 165
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=77.79 E-value=13 Score=35.37 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC-C-CCCCCCCcccHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP-D-GMEPWEDRNDLGK 80 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-~-~~~~~~~~~~~~~ 80 (524)
++|||+.---+. |---+..|+++|.+.| +|+++.+...++..-... .....+++..+. + +.........+..
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~y~v~GTPaD 78 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM----TLGVPLRIKEYQKNNRFFGYTVSGTPVD 78 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc----cCCCCeEEEEEccCCCceEEEEcCcHHH
Confidence 467777664332 2234677899998888 799999887655442221 122345555543 1 1110111122222
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCC----------ch---hHHHHHHHcCCceEEEcc
Q 009851 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGN----------IG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~----------~~---~~~~~A~~lgiP~i~~~~ 136 (524)
.... -+..+.. .+||+||+... ++ +++.-|..+|||.|.++.
T Consensus 79 CV~l-----------al~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 CIKV-----------ALSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHH-----------HHHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 2111 1222222 57999997532 22 345556778999999875
No 166
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=77.77 E-value=4.8 Score=31.73 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCC-cccHHHHHHHHHHhccHHHHHHHH
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWED-RNDLGKLIEKCLQVMPGKLEELIE 98 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~ 98 (524)
++.+|+.|.+.|+ .++++......+++. |+....+.+.....+. .... .+.++++
T Consensus 2 ~~~~a~~l~~lG~--~i~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g~~-------------~i~~~i~ 57 (95)
T PF02142_consen 2 IVPLAKRLAELGF--EIYATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDGRV-------------QIMDLIK 57 (95)
T ss_dssp HHHHHHHHHHTTS--EEEEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTHCH-------------HHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEChHHHHHHHHc---------CCCceeeeeecccCccCCchh-------------HHHHHHH
Confidence 5789999999995 456677777777765 6775554421111100 0001 3444444
Q ss_pred HHhcCCCCCccEEEECCCchh---------HHHHHHHcCCceE
Q 009851 99 EINSREDEKIDCFIADGNIGW---------SMEIAKKMNVRGA 132 (524)
Q Consensus 99 ~l~~~~~~~~D~vI~D~~~~~---------~~~~A~~lgiP~i 132 (524)
. .++|+||..+.-.. -..+|...+||++
T Consensus 58 ~------~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 58 N------GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp T------TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred c------CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 4 89999997764332 2457888899986
No 167
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=77.39 E-value=6.2 Score=38.73 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=32.9
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhh
Q 009851 5 RVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (524)
Q Consensus 5 ~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 45 (524)
|++|+. -|+.|-..-..++|-.++++|++|-+++++..+..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 556444 56779999999999999999999999999877654
No 168
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.03 E-value=4.4 Score=36.71 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 2 SRPRVLVMPAPAQGHVIP-LLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
+..||++--.|+. ..+- ...++++|.++||+|+++.++...+.+
T Consensus 4 ~~k~IllgVTGsi-aa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSH-CTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHH-HHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 4567876665544 4455 799999999999999999998765543
No 169
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=76.88 E-value=16 Score=34.66 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=57.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC--CCCCCCCCcccHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP--DGMEPWEDRNDLGKLI 82 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~ 82 (524)
|||+.---+. |---+..|+++|.+ +|+|+++.+...++..-... .....++...+. ++.........+....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~~~~~~y~v~GTPaDcV 75 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAI----TIRVPLWAKKVFISERFVAYATTGTPADCV 75 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccc----cCCCCceEEEeecCCCccEEEECCcHHHHH
Confidence 5555553332 23336678888864 68999999987665543221 011233333332 1111111112222222
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEECC----------Cch---hHHHHHHHcCCceEEEcc
Q 009851 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADG----------NIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~----------~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
... +. .+.. .+||+||+.. +++ ++..-|..+|||.|.++.
T Consensus 76 ~la-------l~----~~~~---~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 76 KLG-------YD----VIMD---KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred HHH-------HH----hhcc---CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 221 12 2222 5799999643 333 244556778999999885
No 170
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=76.63 E-value=42 Score=27.73 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=64.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
||++.+.++-.|..-..-++.-|...|++|.........+.+.+... ..+-+++.++-...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-----~~~~d~V~iS~~~~-------------- 61 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-----QEDVDVIGLSSLSG-------------- 61 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----HcCCCEEEEcccch--------------
Confidence 58889999999999999999999999999999998655433322211 12444444442211
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
...+.++++++.+++....++-+++.......-......+|+-.+.
T Consensus 62 ---~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 62 ---GHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred ---hhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 1222345666666653222344445543323334455678876654
No 171
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=76.43 E-value=73 Score=30.46 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=54.9
Q ss_pred CCeeEEeccCh---hhhhcCCCcceEEec---CChhh-HHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCC
Q 009851 367 ARGQMISWAPQ---LRVLNHPSIACFLSH---CGWNS-TMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 439 (524)
Q Consensus 367 ~n~~v~~~vpq---~~lL~~~~v~~~ItH---gG~gs-~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~ 439 (524)
.++.+.+++|+ ..+++.+++ ++.- .|.|. +.||+++|+|+|.... ......+.+. +.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecC---
Confidence 67777889882 256755555 5555 35543 5999999999965444 3233444441 3466 322
Q ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHH
Q 009851 440 GIITREEIKNKVDQVLGNQDFKARAL 465 (524)
Q Consensus 440 ~~~t~~~l~~ai~~~l~~~~~r~~a~ 465 (524)
..+.+++.+++..++.+.+.++...
T Consensus 326 -~~~~~~~~~~i~~~~~~~~~~~~~~ 350 (381)
T COG0438 326 -PGDVEELADALEQLLEDPELREELG 350 (381)
T ss_pred -CCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 1268999999999998874333333
No 172
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.31 E-value=26 Score=31.98 Aligned_cols=106 Identities=18% Similarity=0.286 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (524)
+.||++.+.++-.|-....-++..|...|++|+.+......+.+.+... ..+.+++.++-.....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-----~~~~d~v~lS~~~~~~---------- 146 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-----EHKPDILGLSALMTTT---------- 146 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----HcCCCEEEEecccccc----------
Confidence 4689999999999999999999999999999998887654433333211 1245555555322211
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCC--CccEEEECCCchhHHHHHHHcCCceEE
Q 009851 83 EKCLQVMPGKLEELIEEINSREDE--KIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~--~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
.+.++.+++.+++.. . ++.+++..... ....++.+|.-.+.
T Consensus 147 -------~~~~~~~i~~lr~~~-~~~~~~i~vGG~~~--~~~~~~~~GaD~~~ 189 (201)
T cd02070 147 -------MGGMKEVIEALKEAG-LRDKVKVMVGGAPV--NQEFADEIGADGYA 189 (201)
T ss_pred -------HHHHHHHHHHHHHCC-CCcCCeEEEECCcC--CHHHHHHcCCcEEE
Confidence 223556666666532 2 34455555432 24578888876554
No 173
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.25 E-value=60 Score=29.34 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC---C-c-ChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcc
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT---D-Y-NHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRN 76 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~---~-~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 76 (524)
.+-.|.+.+..+.|-....+.+|-+.+.+|++|.++-- . . -+..+-+. .+++++.....++.-.. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~-------l~~v~~~~~g~~~~~~~--~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF-------GGGVEFHVMGTGFTWET--Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc-------CCCcEEEECCCCCcccC--C
Confidence 35578899999999999999999999999999988753 1 1 11111111 13788888776533211 1
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch
Q 009851 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (524)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~ 118 (524)
+..+ -....+..+....+.+.+ .++|+||.|....
T Consensus 92 ~~~e----~~~~~~~~~~~a~~~l~~---~~ydlvVLDEi~~ 126 (191)
T PRK05986 92 DRER----DIAAAREGWEEAKRMLAD---ESYDLVVLDELTY 126 (191)
T ss_pred CcHH----HHHHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 1111 112333444444444444 7899999998766
No 174
>PRK12342 hypothetical protein; Provisional
Probab=75.62 E-value=24 Score=33.56 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCEEEEEeCCcCh--hh-H-HHhhhcCCCCCCCeE-EEecCCCCCCCCCcccHHHHHHHHHHhccHHHHH
Q 009851 21 LEFSQCLAKHGFRVTFVNTDYNH--KR-V-VESLQGKNYLGEQIH-LVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (524)
Q Consensus 21 l~LA~~L~~rGH~Vt~~~~~~~~--~~-i-~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (524)
++.|-.|.+.|.+||+++..... .. + ++... -|.. -+.+.+....+ .+.. .....+..
T Consensus 41 lE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~ala------mGaD~avli~d~~~~g---~D~~--------ata~~La~ 103 (254)
T PRK12342 41 IEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLS------RGPHSLYLVQDAQLEH---ALPL--------DTAKALAA 103 (254)
T ss_pred HHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHH------cCCCEEEEEecCccCC---CCHH--------HHHHHHHH
Confidence 56677777778999999976543 22 2 33321 1221 12222211111 1110 11122344
Q ss_pred HHHHHhcCCCCCccEEEECCCch-h-----HHHHHHHcCCceEEEccc
Q 009851 96 LIEEINSREDEKIDCFIADGNIG-W-----SMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 96 ll~~l~~~~~~~~D~vI~D~~~~-~-----~~~~A~~lgiP~i~~~~~ 137 (524)
.++. ..||+|++..... . +..+|+.||+|++.....
T Consensus 104 ~i~~------~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 104 AIEK------IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHH------hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 4554 4699999866544 3 789999999999986544
No 175
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=75.62 E-value=26 Score=33.46 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEP 71 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 71 (524)
|.++||+++.+++...-. .++++|.++|++|.++......+... ...+++.+-+|.+...
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~--------~l~~~DgLvipGGfs~ 60 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK--------SVSDYDCLVIPGGFSA 60 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc--------chhhCCEEEECCCCCc
Confidence 678899999988775443 56799999999999887643211100 1136777888877543
No 176
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=75.37 E-value=3.5 Score=34.61 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=35.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
+||++...|+.+=.. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 478877777765555 999999999999999999998877776654
No 177
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=75.26 E-value=26 Score=33.46 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=58.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCC-CCCCCCCcccHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLIE 83 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 83 (524)
|||+.---+. |---+..|++.|.+.| +|+++.+...++..-... .....++...+.. +.........+.....
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ai----T~~~pl~~~~~~~~~~~~y~v~GTPaDCV~ 75 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGI----TLHKPLRMYEVDLCGFKVYATSGTPSDTIY 75 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccc----cCCCCcEEEEeccCCcceEEeCCCHHHHHH
Confidence 4555543322 3345778899998887 799999887665443221 1112344444431 1111111122222222
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEE----------C-CCch---hHHHHHHHcCCceEEEcc
Q 009851 84 KCLQVMPGKLEELIEEINSREDEKIDCFIA----------D-GNIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~----------D-~~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
.. +..+ . .+||+||+ | ..++ ++..-|..+|||.|.++.
T Consensus 76 la-----------l~~l-~---~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 76 LA-----------TYGL-G---RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HH-----------HHhc-c---CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 11 1222 2 68999996 3 2223 234456778999999875
No 178
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=75.21 E-value=9.9 Score=39.76 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=46.7
Q ss_pred EeccChhh---hhcCCCcceEEe---cCChh-hHHHHHHcCCc----eeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 372 ISWAPQLR---VLNHPSIACFLS---HCGWN-STMEGVSNGIP----FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 372 ~~~vpq~~---lL~~~~v~~~It---HgG~g-s~~Eal~~GvP----~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
.+++++.+ +++.+++ ||. +-|+| ++.||+++|+| +|+--..+ .+.. ..-|+.+++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~----~~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE----LSGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhh----cCCCEEECC----
Confidence 36778774 5766666 663 34544 67899999999 54432222 1111 133566644
Q ss_pred CCCHHHHHHHHHHHhcCH
Q 009851 441 IITREEIKNKVDQVLGNQ 458 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~ 458 (524)
.+.++++++|.++++++
T Consensus 412 -~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 -YDIDEVADAIHRALTMP 428 (460)
T ss_pred -CCHHHHHHHHHHHHcCC
Confidence 57999999999999865
No 179
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=74.52 E-value=13 Score=38.43 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCeeEE-eccChh--hhhcCCCcceEEecCC--hhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCC
Q 009851 367 ARGQMI-SWAPQL--RVLNHPSIACFLSHCG--WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (524)
Q Consensus 367 ~n~~v~-~~vpq~--~lL~~~~v~~~ItHgG--~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~ 441 (524)
+|+.+. ++.++. +++..+++=+-|+||+ ..++.||+.+|+|++..=...-.. ..+.. |..+..
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecC-----
Confidence 677666 667733 7998899888888876 679999999999999765543211 11211 434432
Q ss_pred CCHHHHHHHHHHHhcCHH-HHHHH
Q 009851 442 ITREEIKNKVDQVLGNQD-FKARA 464 (524)
Q Consensus 442 ~t~~~l~~ai~~~l~~~~-~r~~a 464 (524)
-+.+++.++|.++|++++ ++++.
T Consensus 396 ~~~~~m~~~i~~lL~d~~~~~~~~ 419 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDPNQFRELL 419 (438)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHH
Confidence 468999999999999885 44433
No 180
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=74.42 E-value=16 Score=35.06 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=33.0
Q ss_pred CeeEEeccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCc
Q 009851 368 RGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 413 (524)
Q Consensus 368 n~~v~~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~ 413 (524)
++.+.+-++-.+||.+++. +||-.+ +.-.||+.+|+|++++.-
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3444577888899976666 888765 478999999999998653
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.30 E-value=59 Score=28.39 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=59.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEE---EeCC--cChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTF---VNTD--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~---~~~~--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (524)
-|.+.+..+.|-....+.+|-+.+.+|++|.+ +-.. .-+..+-+.. +++++.....+..-.. .+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-------~~v~~~~~g~~~~~~~--~~~~ 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-------PNIEIHRMGRGFFWTT--ENDE 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-------CCcEEEECCCCCccCC--CChH
Confidence 35678888999999999999999999999999 4442 1122222211 4788888776543221 1111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch
Q 009851 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (524)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~ 118 (524)
+.. ...+..++...+.+.. .++|++|.|....
T Consensus 75 ~~~----~~a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 75 EDI----AAAAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred HHH----HHHHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 111 2223334433344433 7899999998766
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=73.27 E-value=17 Score=35.92 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=40.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~ 49 (524)
+||+++-..+.|++.-...+.+.|.+. +.+||+++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 379999999999999999999999996 8999999998877766543
No 183
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=73.21 E-value=26 Score=33.38 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=51.7
Q ss_pred HHHHHHHHHhC---CCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHH
Q 009851 20 LLEFSQCLAKH---GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEEL 96 (524)
Q Consensus 20 ~l~LA~~L~~r---GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (524)
+..|++.|.+. |++|+++.+...++.+.... .....++...+.++. ......+....... +..+
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~~--yav~GTPaDCV~la-------l~~~ 82 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPRR--FAAEGSPADCVLAA-------LYDV 82 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCCe--EEEcCchHHHHHHH-------HHHh
Confidence 45567777663 47999999987665443221 111245555544211 11112222222221 2222
Q ss_pred HHHHhcCCCCCccEEEECC----------Cch---hHHHHHHHcCCceEEEcc
Q 009851 97 IEEINSREDEKIDCFIADG----------NIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 97 l~~l~~~~~~~~D~vI~D~----------~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
++. .+||+||+.. +++ +++.-|..+|||.|.++.
T Consensus 83 ~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 83 MKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 221 4799999643 333 244556778999999885
No 184
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=73.06 E-value=28 Score=39.21 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=66.4
Q ss_pred ccChh---hhhcCCCcceEEec---CChh-hHHHHHHcCCc---eeccCcccchhhhHHhhccccc-eeeEEecCCCCCC
Q 009851 374 WAPQL---RVLNHPSIACFLSH---CGWN-STMEGVSNGIP---FLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGII 442 (524)
Q Consensus 374 ~vpq~---~lL~~~~v~~~ItH---gG~g-s~~Eal~~GvP---~v~~P~~~DQ~~na~rv~~~lG-~G~~~~~~~~~~~ 442 (524)
++|+. .+++.+++ |+.- -|+| +..|++++|+| ++++.-+ -..+.. +| -|+.+++ .
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~----l~~~allVnP-----~ 428 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS----LGAGALLVNP-----W 428 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh----hcCCeEEECC-----C
Confidence 44544 56766666 6644 3766 67799999999 3444322 222232 23 4778855 7
Q ss_pred CHHHHHHHHHHHhc-CH-HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 443 TREEIKNKVDQVLG-NQ-DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 443 t~~~l~~ai~~~l~-~~-~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
+.++++++|.++|+ ++ .-+++.+++.+.++.. +...-.+.+++.+++...
T Consensus 429 D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 429 NITEVSSAIKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELNDIIV 480 (797)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHHhh
Confidence 89999999999998 44 4555566666666542 445556666666666543
No 185
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=72.82 E-value=30 Score=31.44 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (524)
+.+|++.+.++-.|-....-++.-|..+|++|+++...-..+.+.+... ..+.+++.++-.....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-----~~~pd~v~lS~~~~~~---------- 148 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-----KEKPLMLTGSALMTTT---------- 148 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-----HcCCCEEEEccccccC----------
Confidence 4689999999999999999999999999999999988765444433321 1245555555322221
Q ss_pred HHHHHhccHHHHHHHHHHhcCC-CCCccEEEECCCchhHHHHHHHcCCceE
Q 009851 83 EKCLQVMPGKLEELIEEINSRE-DEKIDCFIADGNIGWSMEIAKKMNVRGA 132 (524)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~-~~~~D~vI~D~~~~~~~~~A~~lgiP~i 132 (524)
.+.++++++.+++.+ ..++-++|..... ....|+++|.-.+
T Consensus 149 -------~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~~ 190 (197)
T TIGR02370 149 -------MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADVY 190 (197)
T ss_pred -------HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcEE
Confidence 223455666666532 1234566655433 3456777776543
No 186
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.65 E-value=6.2 Score=32.61 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=26.9
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMPAPAQG---HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~~~~~G---H~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+||+|+.-|-.+ .-...+.|+.+-++|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 377877766554 45678999999999999999998864
No 187
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=71.71 E-value=27 Score=33.07 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=59.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
|||+.---+. |---+..|+++|.+. |+|+++.+...++.+.... .....+++..+.++ .......+....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~--~~~v~GTPaDcV-- 71 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL----TLTRPLRVEKVDNG--FYAVDGTPTDCV-- 71 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc----cCCCCeEEEEecCC--eEEECCcHHHHH--
Confidence 4555543322 333467889999988 7999999987665543221 11124555554311 011112222221
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECC----------Cch---hHHHHHHHcCCceEEEcc
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADG----------NIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~----------~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
.--+..+.. .+||+||+.. +++ +++.-|...|||.+.++.
T Consensus 72 ---------~~gl~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 72 ---------HLALNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ---------HHHHHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 212222222 5799999643 222 345556778999999875
No 188
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.88 E-value=6.8 Score=35.25 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCccCHH------------HHHHHHHHHHhCCCEEEEEeCCc
Q 009851 2 SRPRVLVMPAPAQGHVI------------PLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~------------p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+..||++...|+.-++. --..||+++..+||+||++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45566766666665553 35789999999999999999985
No 189
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=70.75 E-value=90 Score=30.32 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=64.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhh----c--CCCCCCCeEEEecCCCCCCCCCcccH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQ----G--KNYLGEQIHLVSIPDGMEPWEDRNDL 78 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~----~--~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (524)
.|.+.-.|+.|--.-.-.|.++|.++||+|-++.-+.....--.... + .....+|+=+.++|.. ...
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr-------G~l 125 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR-------GTL 125 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC-------ccc
Confidence 45588899999999999999999999999999987654322111100 0 0011123333443321 111
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEE
Q 009851 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAV 133 (524)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~ 133 (524)
.. ......+.++.+.+ ..+|+||++..-. .=..+++...+=.+.
T Consensus 126 GG--------lS~at~~~i~~ldA---aG~DvIIVETVGvGQsev~I~~~aDt~~~v 171 (323)
T COG1703 126 GG--------LSRATREAIKLLDA---AGYDVIIVETVGVGQSEVDIANMADTFLVV 171 (323)
T ss_pred hh--------hhHHHHHHHHHHHh---cCCCEEEEEecCCCcchhHHhhhcceEEEE
Confidence 11 12223445555554 7899999996655 234555655544444
No 190
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=70.01 E-value=31 Score=32.79 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=31.6
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 7 LVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 7 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
+|..-|+.|...-...+|..+++.|++|.++..+...
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 3555678899999999999999999999999987653
No 191
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=69.92 E-value=29 Score=28.35 Aligned_cols=85 Identities=22% Similarity=0.133 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCC--CCCCCCCcccHHHHHHHHHHhccHHH
Q 009851 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD--GMEPWEDRNDLGKLIEKCLQVMPGKL 93 (524)
Q Consensus 16 H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (524)
+-.-+..+|+.|.+.|.+|. +++...+.+.+. ++....+.. ..... -.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~~~----------------~~~~i 63 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEPQN----------------DKPSL 63 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCCCC----------------CchhH
Confidence 55668899999999998883 455655566554 454433321 11110 01345
Q ss_pred HHHHHHHhcCCCCCccEEEECCC---------chhHHHHHHHcCCceEE
Q 009851 94 EELIEEINSREDEKIDCFIADGN---------IGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 94 ~~ll~~l~~~~~~~~D~vI~D~~---------~~~~~~~A~~lgiP~i~ 133 (524)
.+++++ .++|+||.-+. .+.....|-.+|||++.
T Consensus 64 ~~~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 64 RELLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 566665 79999997432 23456778899999973
No 192
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=69.47 E-value=56 Score=34.05 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|+..+|++.... +.|-..-...|++.|+++|++|..+-+.
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 555566666544 4588999999999999999999988664
No 193
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.18 E-value=60 Score=32.03 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=33.1
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhh
Q 009851 4 PRVLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (524)
Q Consensus 4 ~~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 45 (524)
+||+|++. |+.|-..-..++|-.|++.|..|.+++++..+..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 57886664 4669988889999999999998888877765443
No 194
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=67.99 E-value=29 Score=32.47 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=27.2
Q ss_pred CccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHHHH
Q 009851 107 KIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAASVA 143 (524)
Q Consensus 107 ~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~~~ 143 (524)
-||+++ .|+..- -+..=|.++|||.|.+.-+.+-+..
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~ 194 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDG 194 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCcc
Confidence 388765 676544 5777899999999998776654433
No 195
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.83 E-value=1.1e+02 Score=29.00 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCC-----eeE-----EeccChhhhhcCCCcceEEec-CChhhH
Q 009851 330 LALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAAR-----GQM-----ISWAPQLRVLNHPSIACFLSH-CGWNST 398 (524)
Q Consensus 330 l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n-----~~v-----~~~vpq~~lL~~~~v~~~ItH-gG~gs~ 398 (524)
+.+.+++.+-+|+.+.+... |+.....+..| +.+ .++=|+.+.|+.++. +|.- -..|-.
T Consensus 189 l~k~l~~~g~~~lisfSRRT--------p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~ 258 (329)
T COG3660 189 LVKILENQGGSFLISFSRRT--------PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMC 258 (329)
T ss_pred HHHHHHhCCceEEEEeecCC--------cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhh
Confidence 44455777777777776541 22222222221 112 244589999965554 6554 456778
Q ss_pred HHHHHcCCceec
Q 009851 399 MEGVSNGIPFLC 410 (524)
Q Consensus 399 ~Eal~~GvP~v~ 410 (524)
.||.+.|+|+.+
T Consensus 259 sEAasTgkPv~~ 270 (329)
T COG3660 259 SEAASTGKPVFI 270 (329)
T ss_pred HHHhccCCCeEE
Confidence 899999999965
No 196
>PRK06849 hypothetical protein; Provisional
Probab=67.80 E-value=32 Score=34.99 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.1
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
|+ +++|++.. +.....+.+|+.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 44 56666664 2233689999999999999999987653
No 197
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.66 E-value=13 Score=28.15 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
.-++++..+...|...+-.+|+.|++.|..|...=.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 457788889999999999999999999999886543
No 198
>PRK05973 replicative DNA helicase; Provisional
Probab=66.98 E-value=47 Score=31.18 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=36.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
+++...|+.|-..-.+.++.+-+++|+.|.|++.....+.+.+.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 45666788999999999999999999999999998776555443
No 199
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=66.83 E-value=56 Score=26.27 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHH
Q 009851 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLE 94 (524)
Q Consensus 15 GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (524)
++-.-++.+++.|.+.|+++. +++...+.+++. |+....+.... ...+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~------------------~~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVS------------------EGRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecC------------------CCchhHH
Confidence 466678899999999999883 455566666654 56544332111 0123355
Q ss_pred HHHHHHhcCCCCCccEEEECCC-------chhHHHHHHHcCCceEE
Q 009851 95 ELIEEINSREDEKIDCFIADGN-------IGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 95 ~ll~~l~~~~~~~~D~vI~D~~-------~~~~~~~A~~lgiP~i~ 133 (524)
+++++ .++|+||.-+. .+.....|-..|||++.
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 55555 89999997432 24567778999999985
No 200
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=66.71 E-value=13 Score=33.53 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcCh-hhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHH
Q 009851 11 APAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQ 87 (524)
Q Consensus 11 ~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (524)
..+.|-+.....|+++|.++ |++|.+-+..... +.+.+... +.+...-+|-.
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D------------------- 82 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD------------------- 82 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-------------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-------------------
Confidence 45679999999999999997 8988888775443 33333210 12222223311
Q ss_pred hccHHHHHHHHHHhcCCCCCccEEEECC--CchhHHHHHHHcCCceEEEccc
Q 009851 88 VMPGKLEELIEEINSREDEKIDCFIADG--NIGWSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~D~vI~D~--~~~~~~~~A~~lgiP~i~~~~~ 137 (524)
....++.+++. .+||++|.-. +.+..+..|++.|||.+.++.-
T Consensus 83 -~~~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 -FPWAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp -SHHHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred -CHHHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 22346777777 6788777433 3446788889999999997643
No 201
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=66.48 E-value=1e+02 Score=27.90 Aligned_cols=40 Identities=18% Similarity=0.462 Sum_probs=29.9
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
.+|++.++ -++.|-..-...||..|+++|++|.++=....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35555443 44668888999999999999999988865543
No 202
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.07 E-value=1.5e+02 Score=29.55 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC--hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (524)
+.|++++-.|-.||--.|--=|..|++.|.+|.++..... .+.+.+. ++|+++.++...- .........
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h--------prI~ih~m~~l~~-~~~~p~~~~ 82 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH--------PRIRIHGMPNLPF-LQGGPRVLF 82 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC--------CceEEEeCCCCcc-cCCCchhhh
Confidence 6788888889999999999999999999999999987654 2333333 6999999985331 111111111
Q ss_pred -HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEEC-CCchhHHHHHHHc----CCceEEEccchHHH
Q 009851 81 -LIEKCLQVMPGKLEELIEEINSREDEKIDCFIAD-GNIGWSMEIAKKM----NVRGAVFWPSSAAS 141 (524)
Q Consensus 81 -~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D-~~~~~~~~~A~~l----giP~i~~~~~~~~~ 141 (524)
.++.+.+.+ ..+-.+... .++|.+++- +-+...+.++.-+ |..+++=|....++
T Consensus 83 l~lKvf~Qfl-~Ll~aL~~~------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 83 LPLKVFWQFL-SLLWALFVL------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hHHHHHHHHH-HHHHHHHhc------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 122222211 122233332 678877754 3333444444433 55666655544443
No 203
>PHA02542 41 41 helicase; Provisional
Probab=66.00 E-value=47 Score=34.83 Aligned_cols=41 Identities=10% Similarity=0.328 Sum_probs=34.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
+++..-|+.|-..-.+.+|...++.|+.|.|++-....+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 45667889999999999999999999999999988766544
No 204
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=65.95 E-value=37 Score=33.37 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=58.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
-|+|+-.-+.|-..-.-.||..|.+.|+.|.++..+-+++...+++. .+....|+.++.-..+-.+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~-~w~er~gv~vI~~~~G~DpA------------ 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE-VWGERLGVPVISGKEGADPA------------ 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH-HHHHHhCCeEEccCCCCCcH------------
Confidence 35688888999999999999999999999999999987655444321 00011366666543222221
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECC
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADG 115 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~ 115 (524)
. ..-+-++...+ .++|+||+|.
T Consensus 208 --a----VafDAi~~Aka---r~~DvvliDT 229 (340)
T COG0552 208 --A----VAFDAIQAAKA---RGIDVVLIDT 229 (340)
T ss_pred --H----HHHHHHHHHHH---cCCCEEEEeC
Confidence 1 12233333333 7899999994
No 205
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=65.82 E-value=51 Score=29.25 Aligned_cols=111 Identities=19% Similarity=0.251 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHH-HhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCC-------------CCCC------CC
Q 009851 15 GHVIPLLEFSQCL-AKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDG-------------MEPW------ED 74 (524)
Q Consensus 15 GH~~p~l~LA~~L-~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------------~~~~------~~ 74 (524)
+.+.-.+..|+.| .+.|.+|.+.-+. +...+++.. ++..+.++-. .... ..
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 6677788999999 8899999887664 444444431 3444444310 0000 01
Q ss_pred cccHHHHHHHHHHh--------ccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccchHH
Q 009851 75 RNDLGKLIEKCLQV--------MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAA 140 (524)
Q Consensus 75 ~~~~~~~~~~~~~~--------~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~ 140 (524)
.......+..++.. ....++..++++.. .++|+||.+.. +..+|+++|+|++.+.++..+
T Consensus 88 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 88 IIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp -SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred ccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 11112223333222 15567777777776 78999999954 578899999999998775543
No 206
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=65.50 E-value=58 Score=33.74 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.+||++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 78999999854 6789999999998764
No 207
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=65.14 E-value=66 Score=28.89 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 66 (524)
.-.-.|+..|+++||+||+.+.....+.-.. ...|++...+|
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeC
Confidence 3445688889999999999988654422111 22578887776
No 208
>PRK14099 glycogen synthase; Provisional
Probab=64.67 E-value=11 Score=39.73 Aligned_cols=117 Identities=11% Similarity=0.145 Sum_probs=61.1
Q ss_pred cCCe-eEEeccChh-hhh-cCCCcceEEe---cCCh-hhHHHHHHcCCceeccCccc--chhhhHHhh---ccccceeeE
Q 009851 366 AARG-QMISWAPQL-RVL-NHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFG--DQFLNERYI---CDFWKVGLK 433 (524)
Q Consensus 366 ~~n~-~v~~~vpq~-~lL-~~~~v~~~It---HgG~-gs~~Eal~~GvP~v~~P~~~--DQ~~na~rv---~~~lG~G~~ 433 (524)
++++ .+.++-.+. .++ +.+++ |+. +=|. .+.+||+++|+|.|+....+ |--...... +. -+.|..
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~-~~~G~l 425 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATG-VATGVQ 425 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccC-CCceEE
Confidence 4555 345663332 223 23444 664 3343 37789999998766654322 211111000 01 046877
Q ss_pred EecCCCCCCCHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh
Q 009851 434 FDRDEGGIITREEIKNKVDQ---VLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNAL 496 (524)
Q Consensus 434 ~~~~~~~~~t~~~l~~ai~~---~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 496 (524)
++. -+.++|.++|.+ +++|++.+++. ++..+. +.-|-++..++..+..++++
T Consensus 426 ~~~-----~d~~~La~ai~~a~~l~~d~~~~~~l---~~~~~~---~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 426 FSP-----VTADALAAALRKTAALFADPVAWRRL---QRNGMT---TDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcCHHHHHHH---HHHhhh---hcCChHHHHHHHHHHHHHHH
Confidence 754 579999999987 56676443332 222221 23455555566555555544
No 209
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=64.61 E-value=73 Score=31.11 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=76.5
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHH---hcCCCCEEEEEcCCCCCCCCCCCChhhH----Hhhc-CCeeEE-eccCh---h
Q 009851 311 VVYVSFGSFTILDQVQFQELALGL---ELCKRPFLWVVRPDITTDANDRYPEGFQ----ERVA-ARGQMI-SWAPQ---L 378 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al---~~~~~~~iw~~~~~~~~~~~~~l~~~~~----~~~~-~n~~v~-~~vpq---~ 378 (524)
.+-|-.|..+..+.+.+. +++++ ...+.+++.-++-+.+. +..-+.++ +..+ +|+.+. +++|- .
T Consensus 146 ~~tIlvGNSgd~SN~Hie-~L~~l~~~~~~~v~ii~PlsYp~gn---~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIE-ALRALHQQFGDNVKIIVPMGYPANN---QAYIEEVRQAGLALFGAENFQILTEKLPFDDYL 221 (322)
T ss_pred ceEEEEeCCCCCcccHHH-HHHHHHHHhCCCeEEEEECCcCCCC---HHHHHHHHHHHHHhcCcccEEehhhhCCHHHHH
Confidence 455556765555544443 33333 23344666555432111 11111111 1223 677665 67764 4
Q ss_pred hhhcCCCcceEEec--CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHH
Q 009851 379 RVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (524)
Q Consensus 379 ~lL~~~~v~~~ItH--gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~ 453 (524)
++|+..+++.|+|+ =|.|++.-.++.|||+++-- +=++|.... + .|+-+..+. ..++...+.++=++
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e-~gv~Vlf~~---d~L~~~~v~e~~rq 290 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-E-QGLPVLFTG---DDLDEDIVREAQRQ 290 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-h-CCCeEEecC---CcccHHHHHHHHHH
Confidence 79999999888876 48999999999999998642 334444433 3 387776665 55777777666443
No 210
>PRK06179 short chain dehydrogenase; Provisional
Probab=64.47 E-value=23 Score=33.70 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|...+.++++.+ .|-+ -..+|++|+++|++|+.+...
T Consensus 1 m~~~~~vlVtGa-sg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTGA-SSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEecC-CCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 555556666644 4444 578999999999999887754
No 211
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=64.42 E-value=28 Score=34.30 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHHHH
Q 009851 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAASVA 143 (524)
Q Consensus 106 ~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~~~ 143 (524)
..||+|| .|...- .+..=|.++|||.|.+.-+.+-+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~ 190 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDG 190 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCccc
Confidence 3688766 566544 7888899999999998766554433
No 212
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=64.06 E-value=57 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=26.5
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 009851 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (524)
Q Consensus 6 il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 38 (524)
|.+.. ....|-..-.+.|++.|.++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34443 3356999999999999999999998876
No 213
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=63.05 E-value=57 Score=33.64 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.9
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.+||++|.... +..+|+++|||++.+.
T Consensus 354 ~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 79999999833 6678999999999865
No 214
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=62.97 E-value=70 Score=32.94 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.+||++|.. +.+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 799999988 447789999999998854
No 215
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=62.85 E-value=21 Score=36.86 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.+||++|.+.. ...+|+++|+|++.+.
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 78999999964 5788999999998754
No 216
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=62.66 E-value=34 Score=29.96 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDG 68 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 68 (524)
.+||.+.-.|+.|-..-...+++.|.++|+.|-=+.++.-. ..+.+ .||+.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR----~gGkR-----~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR----EGGKR-----IGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee----cCCeE-----eeeEEEEccCC
Confidence 46889999999999999999999999999998766665433 21111 27787887743
No 217
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=62.22 E-value=59 Score=29.99 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
+.||++.+.++-.|-....-++-.|..+|++|+++......+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v 132 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKIL 132 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 468999999999999999999999999999999999875544443
No 218
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.18 E-value=69 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEE
Q 009851 11 APAQGHVIPLLEFSQCLAKHGFRVTFV 37 (524)
Q Consensus 11 ~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 37 (524)
.++.|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456688899999999999999999886
No 219
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=61.77 E-value=57 Score=34.88 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=46.1
Q ss_pred ChhhhhcCCCcceEEe---cCChh-hHHHHHHcCCceeccCccc-chhhhHHhhccccceeeEEecCCCC--CCCHHHHH
Q 009851 376 PQLRVLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFG-DQFLNERYICDFWKVGLKFDRDEGG--IITREEIK 448 (524)
Q Consensus 376 pq~~lL~~~~v~~~It---HgG~g-s~~Eal~~GvP~v~~P~~~-DQ~~na~rv~~~lG~G~~~~~~~~~--~~t~~~l~ 448 (524)
+..+++..+++ ||. +=|+| ++.||+++|+|+|+....+ ..... ..+......|+.+...... .-+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35566744444 665 44544 8999999999999877643 11111 1222210256666532111 23568888
Q ss_pred HHHHHHhcC
Q 009851 449 NKVDQVLGN 457 (524)
Q Consensus 449 ~ai~~~l~~ 457 (524)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888843
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.62 E-value=51 Score=29.93 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
|+|+-..+.|-..-...||..+..+|..|.+++.+.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 45666678899999999999999999999999998765
No 221
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.20 E-value=25 Score=28.71 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=35.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
|+++.+.+..-|-.-...||..|.++||+|.++-.....+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 688889999999999999999999999999999665543333
No 222
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=61.07 E-value=94 Score=34.56 Aligned_cols=153 Identities=14% Similarity=0.221 Sum_probs=92.2
Q ss_pred ceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCC------------------------CCCCCCChhhHHhh
Q 009851 310 SVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT------------------------DANDRYPEGFQERV 365 (524)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~------------------------~~~~~l~~~~~~~~ 365 (524)
..+|+++=.+...+....+.-++.+.+.|.|++...++.... ...+.+++.-.+..
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 378888766666666777778888888888888887765211 11233333333333
Q ss_pred cCCeeEE-eccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCH
Q 009851 366 AARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITR 444 (524)
Q Consensus 366 ~~n~~v~-~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~ 444 (524)
..++.++ +--||..+ -+.|+|..-.-++. .++|--.-|-.+..+ .+|+.... --.
T Consensus 652 ~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivA--MTGDGVNDApALK~A-dIGIAMG~-----~GT 707 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHKL----------------KIVEALQSRGEVVA--MTGDGVNDAPALKKA-DIGIAMGI-----SGT 707 (972)
T ss_pred hhcceEEEecCchhHH----------------HHHHHHHhcCCEEE--ecCCCccchhhhhhc-ccceeecC-----Ccc
Confidence 4444444 33354432 25666666665544 467776667666664 77766632 234
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHH
Q 009851 445 EEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMN 494 (524)
Q Consensus 445 ~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~ 494 (524)
+.-++|=+=+|.|..|.. +-+|++||-+.+.++.+|+++...
T Consensus 708 dVaKeAsDMVL~DDnFst--------IvaAVEEGr~IynNik~Fir~~lS 749 (972)
T KOG0202|consen 708 DVAKEASDMVLADDNFST--------IVAAVEEGRAIYNNIKNFIRYLLS 749 (972)
T ss_pred HhhHhhhhcEEecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 444556666677776643 344667777888888888877644
No 223
>PRK05595 replicative DNA helicase; Provisional
Probab=60.97 E-value=44 Score=34.75 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=33.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcChhhHH
Q 009851 7 LVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 7 l~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~i~ 47 (524)
++-..|+.|-..-.+.+|..++ +.|+.|.+++.....+.+.
T Consensus 205 viaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 205 LIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 4566778999999999999876 5699999999987655543
No 224
>PRK08760 replicative DNA helicase; Provisional
Probab=60.77 E-value=35 Score=35.82 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i 46 (524)
+++..-|+.|-..-.+.+|...+. .|+.|.|++.....+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 346667899999999999999875 59999999988765444
No 225
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=60.14 E-value=1.3e+02 Score=29.59 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHH
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (524)
--+.+|++.|.++|.+|.++.++...+..+..... .+-..+.+ .....+.++.
T Consensus 194 e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-----~~~~~~~l----------------------~g~~sL~el~ 246 (334)
T TIGR02195 194 EHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-----LPGELRNL----------------------AGETSLDEAV 246 (334)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-----CCcccccC----------------------CCCCCHHHHH
Confidence 36789999999999999988887665544332100 00000000 0111234444
Q ss_pred HHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEcc
Q 009851 98 EEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 98 ~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (524)
.-+ .+-|++|+.- .+.+++|..+|+|.|.++.
T Consensus 247 ali-----~~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 247 DLI-----ALAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred HHH-----HhCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 443 2468999763 4568899999999998764
No 226
>PRK08506 replicative DNA helicase; Provisional
Probab=60.04 E-value=60 Score=34.09 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=34.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
+++...|+.|-..-.+.+|...++.|+.|.|++.......+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 346667899999999999999999999999999987655443
No 227
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=59.92 E-value=37 Score=33.84 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTD 40 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~ 40 (524)
+.+||+++-.|+-| ..+|+.|+..|+ +++++=.+
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 46789999888766 788999999998 67776544
No 228
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=59.92 E-value=11 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
+||.++. +.|++ -..|+++..+|||+||-++-...+
T Consensus 1 mKIaiIg--AsG~~--Gs~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKA--GSRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchh--HHHHHHHHHhCCCeeEEEEeChHh
Confidence 3566554 33444 246899999999999999976543
No 229
>PRK09620 hypothetical protein; Provisional
Probab=59.90 E-value=22 Score=33.18 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCccCH------------HHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 1 MSRPRVLVMPAPAQGHV------------IPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~------------~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
|+..||++...|+.-.+ .--..||++|.++|++|+++....
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45667777766544442 234789999999999999997653
No 230
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=59.86 E-value=27 Score=38.91 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=67.6
Q ss_pred EEeccChhh---hhcCCCcceEEec---CCh-hhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCC
Q 009851 371 MISWAPQLR---VLNHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIIT 443 (524)
Q Consensus 371 v~~~vpq~~---lL~~~~v~~~ItH---gG~-gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t 443 (524)
+.+++++.+ +++.+++ |+.- -|+ .++.|++++|+|-..+|+..+--.-+..+ .-|+.+++ .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P-----~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP-----ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-----CC
Confidence 346788774 5655666 6543 244 47889999977633333333222222222 23677755 68
Q ss_pred HHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhh
Q 009851 444 REEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWTMNALK 497 (524)
Q Consensus 444 ~~~l~~ai~~~l~~~--~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 497 (524)
.++++++|.++|+++ +.+++.+++.+.+++ -+...-.+++++.+.+..+
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAAE 465 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHh
Confidence 999999999999853 455555555555543 2566667777776766543
No 231
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=59.63 E-value=29 Score=34.37 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=30.4
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 8 VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 8 ~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
=++.|+.|-.--...|++.|.++|++|.+++-.+-
T Consensus 42 NltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 42 NLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred ccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 35678899999999999999999999999987653
No 232
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=59.51 E-value=26 Score=35.28 Aligned_cols=112 Identities=12% Similarity=0.205 Sum_probs=65.7
Q ss_pred cCCeeEE-eccChhhhhcCCCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHh----hccccceeeEEecCCCC
Q 009851 366 AARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY----ICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 366 ~~n~~v~-~~vpq~~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~r----v~~~lG~G~~~~~~~~~ 440 (524)
.+|+..+ +..+-.++|..+++ +||--. +.+.|.+..++|+|....-.|+....+- ..+ ..-|..+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~------ 320 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV------ 320 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee------
Confidence 4666665 45567799977777 999874 5889999999999987766665532211 111 1223222
Q ss_pred CCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHH
Q 009851 441 IITREEIKNKVDQVLGNQD-FKARALELKEKAMSSVREGGSSYKTFQNFLQWTM 493 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~~~~-~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~i~ 493 (524)
-+.++|.++|.+++.+.+ ++++.+++.+++-.. .+| .+-+++++.|.
T Consensus 321 -~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~Dg---~s~eri~~~I~ 368 (369)
T PF04464_consen 321 -YNFEELIEAIENIIENPDEYKEKREKFRDKFFKY--NDG---NSSERIVNYIF 368 (369)
T ss_dssp -SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT----S----HHHHHHHHHH
T ss_pred -CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCC--CCc---hHHHHHHHHHh
Confidence 478999999999987664 566677777777442 234 23455555543
No 233
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=59.50 E-value=1.3e+02 Score=26.74 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=58.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---eCC-cC-hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFV---NTD-YN-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~---~~~-~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (524)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++ -.. .. +..+-+. .++++.....++.-.. .+..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~--------~~~~~~~~g~g~~~~~--~~~~ 76 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP--------HGVEFQVMGTGFTWET--QNRE 76 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh--------cCcEEEECCCCCeecC--CCcH
Confidence 466888889999999999999999999999554 333 11 1112111 2688887776543211 1111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch
Q 009851 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (524)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~ 118 (524)
+.. ...+..++...+.+.. .++|+||.|....
T Consensus 77 ~~~----~~~~~~~~~a~~~l~~---~~~DlvVLDEi~~ 108 (173)
T TIGR00708 77 ADT----AIAKAAWQHAKEMLAD---PELDLVLLDELTY 108 (173)
T ss_pred HHH----HHHHHHHHHHHHHHhc---CCCCEEEehhhHH
Confidence 111 1233334444444443 7899999998765
No 234
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=58.68 E-value=1.6e+02 Score=29.84 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=33.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 7 LVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 7 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
++.-.|+.|--.-++.+|..++++|..|.+++.....+.+.
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 45556788999999999999999999999998876655543
No 235
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.58 E-value=68 Score=32.83 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=38.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
..|+++-.=+.|-..-+-.||+.|.++|+.|-+++.+.++...-++
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 3466777778899999999999999999999999999876655444
No 236
>CHL00067 rps2 ribosomal protein S2
Probab=58.47 E-value=39 Score=31.55 Aligned_cols=42 Identities=10% Similarity=0.049 Sum_probs=29.0
Q ss_pred CCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHHHHHHhh
Q 009851 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAASVALVFR 147 (524)
Q Consensus 106 ~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 147 (524)
..||+|| .|+..- .+..-|.++|||.|.+.-+.+.+....+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idyp 203 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIP 203 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCcccccee
Confidence 4688776 565543 68888999999999987665544333333
No 237
>PRK10867 signal recognition particle protein; Provisional
Probab=58.35 E-value=65 Score=33.29 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~i 46 (524)
|+|+..++.|-..-...||..|+++ |+.|.++..+.+....
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 4577777889999999999999999 9999999998776543
No 238
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=57.91 E-value=51 Score=31.26 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=53.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (524)
+||+++..-+.| ..||+.|.++|+ |++-+...+........ ........ ..+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~--G~lg------------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV--GRLG------------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE--CCCC-------------
Confidence 467777644444 478999999999 66655544443332110 00111110 0000
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEE--ECCCch----hHHHHHHHcCCceEEEc
Q 009851 84 KCLQVMPGKLEELIEEINSREDEKIDCFI--ADGNIG----WSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~D~vI--~D~~~~----~~~~~A~~lgiP~i~~~ 135 (524)
....+.+++++ .++++|| +.+|.. -+..+++.+|||++.+-
T Consensus 54 -----~~~~l~~~l~~------~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 -----DEEGLAEFLRE------NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred -----CHHHHHHHHHh------CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 22335566666 7889887 222222 25678999999999964
No 239
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=57.80 E-value=74 Score=32.77 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~i~ 47 (524)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.......+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 34666789999999999999887 6799999999887655443
No 240
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=57.72 E-value=88 Score=29.13 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=33.5
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcChhhHHH
Q 009851 7 LVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 7 l~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~i~~ 48 (524)
++...++.|-..-.+.++..++.+ |+.|.+++.......+..
T Consensus 17 lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 17 IIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 355566779999999999999887 999999999876554443
No 241
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=56.82 E-value=78 Score=30.12 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=52.2
Q ss_pred HHHHHHHHhC--CCEEEEEeCCcCh----hhHHHhhhcCCCCCCCeE-EEecCCCCCCCCCcccHHHHHHHHHHhccHHH
Q 009851 21 LEFSQCLAKH--GFRVTFVNTDYNH----KRVVESLQGKNYLGEQIH-LVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKL 93 (524)
Q Consensus 21 l~LA~~L~~r--GH~Vt~~~~~~~~----~~i~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (524)
++.|-.|.++ |.+||+++-.... ..+++... -|.. -+.+.+....+ .+.. .....+
T Consensus 42 lE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLA------mGaD~avli~d~~~~g---~D~~--------~tA~~L 104 (256)
T PRK03359 42 IEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLS------RGPDELIVVIDDQFEQ---ALPQ--------QTASAL 104 (256)
T ss_pred HHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHH------cCCCEEEEEecCcccC---cCHH--------HHHHHH
Confidence 5667778876 3799999976533 33554431 1222 12222211111 1110 112224
Q ss_pred HHHHHHHhcCCCCCccEEEECCCch------hHHHHHHHcCCceEEEccc
Q 009851 94 EELIEEINSREDEKIDCFIADGNIG------WSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 94 ~~ll~~l~~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~i~~~~~ 137 (524)
...++. ..||+|++..... -+..+|+.||+|++.+...
T Consensus 105 a~ai~~------~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 105 AAAAQK------AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHH------hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 444554 4699999765433 3678999999999986654
No 242
>PRK06321 replicative DNA helicase; Provisional
Probab=56.36 E-value=78 Score=33.20 Aligned_cols=42 Identities=12% Similarity=0.282 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++..-|+.|-....+.+|...+. .|..|.|++.......+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 346667899999999999999874 599999999887654443
No 243
>PRK08006 replicative DNA helicase; Provisional
Probab=56.05 E-value=66 Score=33.71 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++-.-|+.|-....+.+|...+. .|+.|.|++.....+.+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 346668899999999999999874 599999999887654443
No 244
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=55.95 E-value=1.4e+02 Score=25.89 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=69.4
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEE
Q 009851 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFL 390 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~I 390 (524)
.|-|-+||.+ +....++..+.|++.+..+-..+..- ...|+.+. +++. -+.+..++.||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~---~~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVK---EYEARGADVII 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHH---HTTTTTESEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHH---HhccCCCEEEE
Confidence 4556677643 67788889999988886655444322 22233322 1111 11122344588
Q ss_pred ecCChh----hHHHHHHcCCceeccCcccchhhhHH------hhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHH
Q 009851 391 SHCGWN----STMEGVSNGIPFLCWPYFGDQFLNER------YICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 460 (524)
Q Consensus 391 tHgG~g----s~~Eal~~GvP~v~~P~~~DQ~~na~------rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~ 460 (524)
.=.|.. ++..++ .-.|+|.+|...++..... .+-. |+++..-.- +...++.-+...|-. +.|+++
T Consensus 61 a~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~--g~pvatv~i-~~~~nAA~~A~~ILa-~~d~~l 135 (150)
T PF00731_consen 61 AVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPS--GVPVATVGI-NNGFNAALLAARILA-LKDPEL 135 (150)
T ss_dssp EEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--T--TS--EE-SS-THHHHHHHHHHHHHH-TT-HHH
T ss_pred EECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccC--CCCceEEEc-cCchHHHHHHHHHHh-cCCHHH
Confidence 877754 333333 3799999999876542221 1221 565443210 011233444444422 358899
Q ss_pred HHHHHHHHHHHHh
Q 009851 461 KARALELKEKAMS 473 (524)
Q Consensus 461 r~~a~~l~~~~~~ 473 (524)
+++.+..+++.++
T Consensus 136 ~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 136 REKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999988888775
No 245
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=55.72 E-value=41 Score=31.48 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=52.3
Q ss_pred CEEEEEcCCCccC--H--HHHHHHHHHHHhCCCEEEEEeCCcC--hhhHHHhhhcCCCCCCCeE--EEecCCCCCCCCCc
Q 009851 4 PRVLVMPAPAQGH--V--IPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIH--LVSIPDGMEPWEDR 75 (524)
Q Consensus 4 ~~il~~~~~~~GH--~--~p~l~LA~~L~~rGH~Vt~~~~~~~--~~~i~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~ 75 (524)
..|+|.+..+... + .-+.+|++.|.++|.+|.++.++.. .+.+.... .+.+ .+.+.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-------~~~~~~~~~~~--------- 169 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-------AGLQNPVINLA--------- 169 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-------TTHTTTTEEET---------
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-------HhcccceEeec---------
Confidence 4566777554422 1 3368999999999988888888766 22222221 0111 11111
Q ss_pred ccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccch
Q 009851 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (524)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~~ 138 (524)
....+.++..-+ .+.|++|+.- .+..++|..+|+|.+.++...
T Consensus 170 -------------~~~~l~e~~ali-----~~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 -------------GKTSLRELAALI-----SRADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -------------TTS-HHHHHHHH-----HTSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred -------------CCCCHHHHHHHH-----hcCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 011244444444 3468888653 457899999999999987543
No 246
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=55.72 E-value=98 Score=32.00 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 93 LEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 93 ~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
+.++++. .+||++|.+.. ...+|+++|||++.+.
T Consensus 364 ~~~~l~~------~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 364 IESYAKE------LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHh------cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 4555555 78999999965 6789999999998754
No 247
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=55.67 E-value=19 Score=32.38 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 44 (524)
.||++--.|+.|=+.-.+.+.++|.+.|++|+++.++....
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 36777766766666666799999999999999999876544
No 248
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=55.36 E-value=1.5e+02 Score=32.88 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=60.0
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHH
Q 009851 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (524)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (524)
.|.+.+.. ..|-..-.+.|++.|.++|.+|.++=+-... | .. ......
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~----------------------p--~~-------~~~~~~ 52 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP----------------------P--LT-------MSEVEA 52 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC----------------------C--CC-------HHHHHH
Confidence 46666544 4589999999999999999999998653211 0 00 000000
Q ss_pred HHHH-hccHHHHHHHHHHhcCCCCCccEEEECCCch---------hHHHHHHHcCCceEEEccch
Q 009851 84 KCLQ-VMPGKLEELIEEINSREDEKIDCFIADGNIG---------WSMEIAKKMNVRGAVFWPSS 138 (524)
Q Consensus 84 ~~~~-~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~---------~~~~~A~~lgiP~i~~~~~~ 138 (524)
.+.. .....++.+++.+..-. .+.|++|+|...+ ....+|+.++.|.+.+....
T Consensus 53 ~~~~~~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 53 LLASGQLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHhccCChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 0000 01122233333322111 5789999887643 24678999999999987554
No 249
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.31 E-value=50 Score=34.02 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 44 (524)
|+|+-.++.|-..-...||..|.++|++|.+++.+.+..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 457777788999999999999999999999999987764
No 250
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.22 E-value=9.9 Score=33.12 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=26.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
||.++-.|.+|+ .+|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 567777776664 79999999999999999975
No 251
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=54.05 E-value=31 Score=30.38 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=26.9
Q ss_pred hccHHHHHHHHHHhcCCCCCccEEEECCCchhHH--H-H--HHHc-CCceEEEccc
Q 009851 88 VMPGKLEELIEEINSREDEKIDCFIADGNIGWSM--E-I--AKKM-NVRGAVFWPS 137 (524)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~--~-~--A~~l-giP~i~~~~~ 137 (524)
.....+.+++++ .+||+||+-..++... . + ...+ ++|.+.+.|-
T Consensus 76 ~~~~~l~~~l~~------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 76 LFARRLIRLLRE------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHhh------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 334445555555 8999999998765333 2 1 2224 5888776654
No 252
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=53.95 E-value=18 Score=32.38 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
+||++.-.|+.|=. -...+.+.|.++|++|.++.++...+.+.
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 46776666655544 48999999999999999999987666654
No 253
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=53.66 E-value=1.1e+02 Score=32.28 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=37.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
+++.-.++.|-..-.+.++.+.+++|..|.+++..+..+.+...
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 55677788899999999999999999999999998876666543
No 254
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=53.55 E-value=83 Score=30.26 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.5
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 4 PRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 4 ~~il-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
.+++ |+..++.|-..-...||..|++.|++|.++..+.+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3444 666778899999999999999999999999988653
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.49 E-value=22 Score=33.78 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
...++|.-.++.|-..=..+||.+|.++|+.|+|++.+.....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 3568888888888888899999999999999999999776655544
No 256
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=53.12 E-value=22 Score=31.91 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=35.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~~ 48 (524)
+||++.-.|+-+ .+=...++++|.+ .||+|.++.++...+.+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 467766666666 7779999999999 5999999999887777654
No 257
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=52.75 E-value=35 Score=33.51 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
|+++||+++-.|+.| ..+|..|++.||+|+++.... .+.+..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHh
Confidence 457899999888776 457888999999999998765 344433
No 258
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=52.75 E-value=94 Score=32.43 Aligned_cols=27 Identities=26% Similarity=0.106 Sum_probs=21.9
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.+||++|.. .....+|+++|||++.+.
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 789999987 335778899999998753
No 259
>PRK09165 replicative DNA helicase; Provisional
Probab=52.61 E-value=75 Score=33.59 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKH---------------GFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~r---------------GH~Vt~~~~~~~~~~i~ 47 (524)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.....+.+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 4466678899999999999988754 78999999987765554
No 260
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=52.13 E-value=38 Score=35.00 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=28.3
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
|. .+|||++-.+++-| +||+.|.+-++...+++.+.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 54 47999999888777 6899999988665555555543
No 261
>PRK05920 aromatic acid decarboxylase; Validated
Probab=52.10 E-value=24 Score=32.20 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
.+||++--.|+ +..+=...+.+.|.+.||+|+++.+......+..
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 45677665554 4447889999999999999999999887766643
No 262
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.09 E-value=34 Score=31.82 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=33.6
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
|.|+. =|+.|-..-.+.||.+|+++|-.|+++=.+.++...
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 34444 456799999999999999999999999988776544
No 263
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=51.81 E-value=25 Score=32.95 Aligned_cols=97 Identities=8% Similarity=0.104 Sum_probs=51.1
Q ss_pred CceEEEeecCC---CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCe-eEEe--ccChh-hhh
Q 009851 309 SSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARG-QMIS--WAPQL-RVL 381 (524)
Q Consensus 309 ~~vV~vs~GS~---~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~-~v~~--~vpq~-~lL 381 (524)
++.|.+..|+. -..+.+.+.++++.+.+.+++++...+... .....-+.+.+....++ .+.+ -+.|. .++
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali 181 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE---QEKEIADQIAAGLQNPVINLAGKTSLRELAALI 181 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH---HHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH---HHHHHHHHHHHhcccceEeecCCCCHHHHHHHH
Confidence 55788888876 346788899999999877766654433220 00000011111112222 2322 23343 788
Q ss_pred cCCCcceEEecCChhhHHHHHHcCCceecc
Q 009851 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCW 411 (524)
Q Consensus 382 ~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~ 411 (524)
+++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 182 ~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 182 SRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred hcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 67666 8886 457899999999999987
No 264
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=51.66 E-value=1.6e+02 Score=26.23 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=51.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCE--EEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFR--VTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKL 81 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~--Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (524)
+||+|+..++. ..+..+.++|.+++|+ +.++.+............. .++....+....- ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-----~~~~~~~~~~~~~------~~--- 63 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-----NGIPAQVADEKNF------QP--- 63 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-----TTHHEEEHHGGGS------SS---
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-----CCCCEEeccccCC------Cc---
Confidence 47887754444 5566778899999997 4444444332221111000 1222211110000 00
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch-hHHHHHHHcCCceEEEccc
Q 009851 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG-WSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~-~~~~~A~~lgiP~i~~~~~ 137 (524)
.+...+.+.+.++. .+||++|+-.+.. -...+-+.....++-+.++
T Consensus 64 ----~~~~~~~~~~~l~~------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 64 ----RSENDEELLELLES------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ----HHHHHHHHHHHHHH------TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ----hHhhhhHHHHHHHh------hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 01122233444444 8999998876532 3444556666677776654
No 265
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.23 E-value=1.1e+02 Score=31.19 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=65.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (524)
|++=--|+-|--.=+++++..|+++| .|.+++..+....++-...+- ++.- .++ ..
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~~~-------------~~l----~l- 151 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GLPT-------------NNL----YL- 151 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CCCc-------------cce----EE-
Confidence 44555678899999999999999999 999999998876664321110 1100 000 00
Q ss_pred HHhccHHHHHHHHHHhcCCCCCccEEEECCCch-h--------------------HHHHHHHcCCceEEEcc
Q 009851 86 LQVMPGKLEELIEEINSREDEKIDCFIADGNIG-W--------------------SMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~-~--------------------~~~~A~~lgiP~i~~~~ 136 (524)
...-.++++++.+.. .+||++|.|..-. + ...+|+..||+.+.+-.
T Consensus 152 --~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 152 --LAETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred --ehhcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 111225556666655 8999999997532 1 13568888888887643
No 266
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=51.10 E-value=2.3e+02 Score=27.03 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=28.6
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 4 PRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.|++.++ -++.|-..-.+.||..|++.|++|.++=..
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4555444 346688888899999999999999988554
No 267
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=50.86 E-value=1.6e+02 Score=25.22 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
|.++-.++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777888999999999999999999999988663
No 268
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=50.59 E-value=28 Score=33.92 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCCCEEE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 1 MSRPRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 1 m~~~~il-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
|+++|++ |..=|+.|-..-...||-.|++.|++|.++=.+..
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 7777666 65666779999999999999999999999865443
No 269
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=50.28 E-value=2.2e+02 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
|++.+++...-|+.|-......||..|+++|++|.++-.+...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 5555555556778899999999999999999999999766443
No 270
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=50.26 E-value=67 Score=30.42 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=53.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (524)
.+|+++..-+.| ..||+.|.++|+.|++.+...+.. ... .+..... ..+.
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~---------~~~~v~~--G~l~------------- 52 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD---------LPGPVRV--GGFG------------- 52 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc---------CCceEEE--CCCC-------------
Confidence 457776644444 478999999999888776655433 110 1111111 0000
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEE--ECCCch----hHHHHHHHcCCceEEEc
Q 009851 84 KCLQVMPGKLEELIEEINSREDEKIDCFI--ADGNIG----WSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~D~vI--~D~~~~----~~~~~A~~lgiP~i~~~ 135 (524)
..+.+.+++++ .++++|| +.+|.. -+..+++.+|||++.+-
T Consensus 53 -----~~~~l~~~l~~------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 -----GAEGLAAYLRE------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred -----CHHHHHHHHHH------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 12345566666 7889877 222322 25678999999999975
No 271
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=49.93 E-value=32 Score=33.48 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeC
Q 009851 1 MSRPRVLVMPAPAQG-H---VIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 1 m~~~~il~~~~~~~G-H---~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
|++.||+++..|..+ | +...-.++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 889999988865332 2 45667889999999999988743
No 272
>PRK11823 DNA repair protein RadA; Provisional
Probab=49.92 E-value=2.2e+02 Score=29.68 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=34.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
+++.-.|+.|-..-++.+|..++++|++|.+++.....+.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 345666788999999999999999999999999887665553
No 273
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=49.80 E-value=32 Score=29.99 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
+..+|+++-.|.. ....++.|.+.||+||++.+...
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCccC
Confidence 3467777765533 37789999999999999965433
No 274
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=49.25 E-value=22 Score=31.87 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
|++--.|+-|-.. ...+.+.|.++|++|.++.++.....+.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 4444445445444 4899999999999999999988777764
No 275
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.87 E-value=3.2e+02 Score=28.10 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
..|+|+-.++.|-..-...||..|..+|..|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4567888888899999999999999999999999997664
No 276
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.73 E-value=1.6e+02 Score=27.56 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEECCCchh---HHHHHHHcCCceEE
Q 009851 90 PGKLEELIEEINSREDEKIDCFIADGNIGW---SMEIAKKMNVRGAV 133 (524)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~---~~~~A~~lgiP~i~ 133 (524)
.+.++.+++.+. +-++.+.|.-+.+ +..+|...|||++.
T Consensus 137 ~~aM~~~m~~Lk-----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK-----ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH-----HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 556677777774 4689999987773 56789999999986
No 277
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=48.64 E-value=1.7e+02 Score=31.16 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=65.0
Q ss_pred ccCHHHHHHHH-HHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCC-C------------CCC------C
Q 009851 14 QGHVIPLLEFS-QCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDG-M------------EPW------E 73 (524)
Q Consensus 14 ~GH~~p~l~LA-~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~------------~~~------~ 73 (524)
.|++.-.+.+| +.+.+.|++|.+.-+ .+.+.+++.. .+-++.++-. + ... .
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~--------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~ 106 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRL--------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQ 106 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhC--------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecC
Confidence 37777778888 446667887766555 4556666542 3444444310 0 000 0
Q ss_pred CcccHHHHHHHHHHh--------ccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccc
Q 009851 74 DRNDLGKLIEKCLQV--------MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 74 ~~~~~~~~~~~~~~~--------~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (524)
....-.+.+..+++. ....++..++.+.+ .++++||.|.. +..+|+++|++.+.+.+.
T Consensus 107 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~---~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 107 DTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA---RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH---CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 011112222222222 14566777788777 78999999964 678999999999988764
No 278
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=48.58 E-value=27 Score=35.71 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=36.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
|+..||++.-.|+. ...=...+.+.|.++|++|.++.++.....+..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 35678887766655 556789999999999999999999877666643
No 279
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=48.14 E-value=58 Score=28.83 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=35.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
+++.-.|+.|-..-.+.++.+.++.|..|.+++.....+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 4566777889999999999999999999999999877655543
No 280
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=47.97 E-value=96 Score=32.04 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~i 46 (524)
++++..++.|-..-...||..|. ++|.+|.++..+.+....
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 45777778899999999999997 589999999998776543
No 281
>PRK05993 short chain dehydrogenase; Provisional
Probab=47.97 E-value=1.1e+02 Score=29.15 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|...+.++++.++ |- --..+|+.|+++|++|.++...
T Consensus 1 m~~~k~vlItGas-gg--iG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 1 MDMKRSILITGCS-SG--IGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCCCEEEEeCCC-cH--HHHHHHHHHHHCCCEEEEEECC
Confidence 5555566666443 32 2367899999999999887654
No 282
>PRK05636 replicative DNA helicase; Provisional
Probab=47.81 E-value=87 Score=33.16 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=32.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~i 46 (524)
|++..-|+.|-..-.+.+|...+ +.|..|.|++.......+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 34566788899999999999876 458899999888765444
No 283
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=47.46 E-value=2e+02 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=30.8
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 6 il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
|.|.. -|+.|-..-.+.||..|+++|++|.++=.+..
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 44444 66789999999999999999999999987654
No 284
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=47.41 E-value=93 Score=28.68 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
+++.-.++.|-..-.+.++..-+++|+.|.+++.....+.+.+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 44566678888888899998888889999999998776555443
No 285
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.36 E-value=2.6e+02 Score=26.66 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEEEccchH
Q 009851 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSA 139 (524)
Q Consensus 92 ~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~~~~~~~ 139 (524)
.+.++++.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+...
T Consensus 205 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~ 251 (266)
T cd01018 205 DLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAA 251 (266)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHH
Confidence 34555555555 7899999998766 467889999999988876553
No 286
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=47.25 E-value=2.2e+02 Score=28.52 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHH-h-cCCCCEEEEEcCCCCCCCCCCCChhhHH--hhcCCeeEEeccChh---hhhcCCCcceEEecCC
Q 009851 322 LDQVQFQELALGL-E-LCKRPFLWVVRPDITTDANDRYPEGFQE--RVAARGQMISWAPQL---RVLNHPSIACFLSHCG 394 (524)
Q Consensus 322 ~~~~~~~~l~~al-~-~~~~~~iw~~~~~~~~~~~~~l~~~~~~--~~~~n~~v~~~vpq~---~lL~~~~v~~~ItHgG 394 (524)
...+.+.+++.-+ . ..+.+|+..-++++ ...+ +..+| .+.+++.+.+-+||. ++|...++ |++-.=
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk----~i~l-ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSl 280 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPK----RIDL-EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSL 280 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcc----cchH-HHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHH
Confidence 3455666655444 3 45678885543331 1111 23333 246899999999998 67877777 776432
Q ss_pred ----hhhHHHHHHcCCceec
Q 009851 395 ----WNSTMEGVSNGIPFLC 410 (524)
Q Consensus 395 ----~gs~~Eal~~GvP~v~ 410 (524)
.-++.||..+|.|+|.
T Consensus 281 TEafc~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVVS 300 (426)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 2367899999999874
No 287
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=46.99 E-value=85 Score=29.22 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=26.5
Q ss_pred CCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHH
Q 009851 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAAS 141 (524)
Q Consensus 106 ~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~ 141 (524)
..||+|| .|+..- .+..=|.++|||.|.+.-+.+-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p 191 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDP 191 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCC
Confidence 4688766 666533 67888999999999987665543
No 288
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=46.98 E-value=39 Score=29.46 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=26.7
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEE
Q 009851 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVV 345 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~ 345 (524)
.+|+|+||........++..++++.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999888777778888888877665334443
No 289
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=46.91 E-value=1.5e+02 Score=25.25 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcChh---hHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHH
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDYNHK---RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEEL 96 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~~~~---~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (524)
...+.+.|.++|+.+.++|...... ..+..+.. .-+..+...+..... +.-...++.+
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-----~~f~~i~~~~~~~~~--------------Kp~~~~~~~~ 142 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-----DYFDEIISSDDVGSR--------------KPDPDAYRRA 142 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-----GGCSEEEEGGGSSSS--------------TTSHHHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc-----cccccccccchhhhh--------------hhHHHHHHHH
Confidence 3567788888999999999875332 22222110 012222222111111 1112234555
Q ss_pred HHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEE
Q 009851 97 IEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (524)
Q Consensus 97 l~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (524)
++.+.- .+-+++++|-.. .-...|...|++.|.+
T Consensus 143 ~~~~~~---~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 143 LEKLGI---PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHTS---SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHcCC---CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 555432 344677777665 7899999999999864
No 290
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=46.84 E-value=29 Score=30.84 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 5 RVLVMPAPAQGHVIP-LLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 5 ~il~~~~~~~GH~~p-~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
||+..-.++ ||... .+.+.+.|.+ +||+|.++.++...+.++
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 345444444 77765 8999999985 699999999987776554
No 291
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=46.65 E-value=2e+02 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~ 40 (524)
+||+|+..+..+-+. .|.+.+.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 678888866544433 5666676664 777776544
No 292
>PRK07773 replicative DNA helicase; Validated
Probab=46.45 E-value=1.1e+02 Score=35.03 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~i~ 47 (524)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.......+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 4566778999999999999998765 88999999887765543
No 293
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=46.39 E-value=1.6e+02 Score=25.64 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 44 (524)
+++.-.++.|-......+|..|+++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 457777888999999999999999999999999876643
No 294
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.25 E-value=1.5e+02 Score=31.14 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.6
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEE
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~ 133 (524)
.+||++|.+ .....+|+++|||++.
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 689999997 4577899999999984
No 295
>PRK00784 cobyric acid synthase; Provisional
Probab=45.89 E-value=2.5e+02 Score=29.58 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=27.7
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
.|++.... ..|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35555443 469999999999999999999987755
No 296
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=45.77 E-value=30 Score=35.19 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
|+..||++...|+.+ ..-...+.+.|.+.|++|.++.++.....+..
T Consensus 1 l~~k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 1 LENKKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCCEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 456788876656544 46689999999999999999999887766653
No 297
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=45.73 E-value=25 Score=31.39 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=31.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
||++.-.|+ +...-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 566555554 455566799999999999999999987665553
No 298
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.48 E-value=1.7e+02 Score=30.34 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=53.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (524)
+|+++.. +-...+.+++.|.+-|-+|..+......+..+... .+. +. ..+.
T Consensus 312 krvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~-------~~~--~~----------~~D~----- 362 (432)
T TIGR01285 312 KKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLP-------VET--VV----------IGDL----- 362 (432)
T ss_pred CEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCC-------cCc--EE----------eCCH-----
Confidence 5666554 22466888888999999987777655433221110 000 00 0111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
..+++++++ .++|++|.+.. ...+|+++|||++.+.
T Consensus 363 -------~~l~~~i~~------~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 -------EDLEDLACA------AGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred -------HHHHHHHhh------cCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 123455555 78999998854 6789999999998754
No 299
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.23 E-value=1.3e+02 Score=30.77 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEE
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (524)
.+||++|.... ...+|+++|||++.+
T Consensus 355 ~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 78999999944 468899999999854
No 300
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=45.15 E-value=1e+02 Score=32.70 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCccEEE----ECCCchhHHHHHHHcCCceEEEccchH
Q 009851 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSA 139 (524)
Q Consensus 106 ~~~D~vI----~D~~~~~~~~~A~~lgiP~i~~~~~~~ 139 (524)
..+|.+| ||-..+..+..|-+++||.|.+...+.
T Consensus 108 ~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm 145 (552)
T PRK00911 108 HWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPI 145 (552)
T ss_pred CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 7899877 898889899999999999999976654
No 301
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=44.84 E-value=97 Score=28.53 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
+++++ |+.|++ -..+|+.|+++|++|+++..
T Consensus 2 ~~lIt-G~sg~i--G~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVT-GGMGGI--GTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEE-CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 44555 445665 56779999999999988765
No 302
>PRK08862 short chain dehydrogenase; Provisional
Probab=44.60 E-value=1.1e+02 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.203 Sum_probs=23.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
-|.++++.++. .+ -.++|++|+++|++|.++..
T Consensus 5 ~k~~lVtGas~-GI--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 5 SSIILITSAGS-VL--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred CeEEEEECCcc-HH--HHHHHHHHHHCCCEEEEEcC
Confidence 35666664443 33 67899999999999988754
No 303
>PRK11519 tyrosine kinase; Provisional
Probab=44.60 E-value=4.9e+02 Score=29.04 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhh------------hcCC--------CCCCCe
Q 009851 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL------------QGKN--------YLGEQI 60 (524)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~------------~~~~--------~~~~~i 60 (524)
+.|+++++ .|+.|-..-...||..|+..|++|.++-.+.....+.... .... ...+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 35666555 4577999999999999999999999997654332222111 0000 001233
Q ss_pred EEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch----hHHHHHHHcCCceEEEc
Q 009851 61 HLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~----~~~~~A~~lgiP~i~~~ 135 (524)
.+++-.. ...+..+++ ....++++++.++ .++|.||.|.--. -+..++...+...+++.
T Consensus 605 ~~lp~g~------~~~~~~ell------~s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIPRGQ------VPPNPSELL------MSERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEeCCC------CCCCHHHHh------hHHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 3333221 112233322 1334677777765 4899999995422 25667787777666654
No 304
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=44.43 E-value=89 Score=31.17 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTD 40 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~ 40 (524)
+++||+++-.|+-| ..+|+.|+..|. +++++=.+
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 46789999888766 567899999997 78887664
No 305
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=44.35 E-value=3.4e+02 Score=27.11 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=58.8
Q ss_pred CCeeEE-eccChh---hhhcCCCcceEEec--CChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCC
Q 009851 367 ARGQMI-SWAPQL---RVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (524)
Q Consensus 367 ~n~~v~-~~vpq~---~lL~~~~v~~~ItH--gG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~ 440 (524)
+|+.+. +++|-. ++|+.++++.|.|. =|.|++.-.++.|+|+++- .+-+.|-. +.+ .|+-+.... .
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~-l~~-~~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQD-LKE-QGIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHH-HHh-CCCeEEecc---c
Confidence 467654 688755 79988888777764 5899999999999999753 23333433 334 377776654 5
Q ss_pred CCCHHHHHHHHHHHhc
Q 009851 441 IITREEIKNKVDQVLG 456 (524)
Q Consensus 441 ~~t~~~l~~ai~~~l~ 456 (524)
.++...|+++=+.+..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 6899999988887763
No 306
>PRK06988 putative formyltransferase; Provisional
Probab=44.13 E-value=1.8e+02 Score=28.52 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
++||+|+..+. ..+...+.|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 36899886443 44666788888999988777653
No 307
>PRK07952 DNA replication protein DnaC; Validated
Probab=44.08 E-value=79 Score=29.85 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=27.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+++...++.|-..=..+||.+|.++|+.|.+++...
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 556666677777778888888888888888876433
No 308
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=43.83 E-value=1.3e+02 Score=29.61 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
-|+++-.++.|-..-...||..|+.+|++|.++..+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 345777778899999999999999999999999987654
No 309
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=43.64 E-value=65 Score=31.70 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=72.2
Q ss_pred ceEEEeecC-C--CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEe--ccChh-hhhcC
Q 009851 310 SVVYVSFGS-F--TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMIS--WAPQL-RVLNH 383 (524)
Q Consensus 310 ~vV~vs~GS-~--~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~--~vpq~-~lL~~ 383 (524)
+.|.+..|+ . -..+.+.+.++++.+...+.++++..+.. .+.+.-+.+.+. ..++.+.+ .+.+. .++++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~----~e~~~~~~i~~~-~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE----HEEQRAKRLAEG-FPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHcc-CCcceecCCCCHHHHHHHHHh
Confidence 355444444 3 34678889999998866677766543432 011111222211 12333432 34454 68866
Q ss_pred CCcceEEecCChhhHHHHHHcCCceecc--CcccchhhhHHhhccccceeeEEecC--CCCCCCHHHHHHHHHHHhc
Q 009851 384 PSIACFLSHCGWNSTMEGVSNGIPFLCW--PYFGDQFLNERYICDFWKVGLKFDRD--EGGIITREEIKNKVDQVLG 456 (524)
Q Consensus 384 ~~v~~~ItHgG~gs~~Eal~~GvP~v~~--P~~~DQ~~na~rv~~~lG~G~~~~~~--~~~~~t~~~l~~ai~~~l~ 456 (524)
+++ ||+. ..|.++=|.+.|+|+|++ |... ..++-.-.. .....+. --..++.+++.++++++|.
T Consensus 254 a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p--~~~~p~~~~----~~~~~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKA--VVSV-DTGLSHLTAALDRPNITLYGPTDP--GLIGGYGKN----QHACRSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CCE--EEec-CCcHHHHHHHhCCCEEEEECCCCc--ccccCCCCC----ceeecCCCcccccCCHHHHHHHHHHHhh
Confidence 666 9986 458899999999999874 3221 111110000 0001110 0146889999999988763
No 310
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=43.53 E-value=88 Score=29.93 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHH
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (524)
.-+.+|++.|.++|++|.++..+...+..+...... .+-..+.+ .....+.++.
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~----~~~~~~~~----------------------~~~~~l~e~~ 193 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAAL----GGPRVVNL----------------------AGKTSLRELA 193 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc----CCCccccC----------------------cCCCCHHHHH
Confidence 468899999999999999888776555544321000 00000000 0011233444
Q ss_pred HHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccc
Q 009851 98 EEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 98 ~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (524)
..+ .+-|++|+.- .+..++|..+|+|.+.+...
T Consensus 194 ~li-----~~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 194 ALL-----ARADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHH-----HhCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 433 2468888653 36788889999999997643
No 311
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=43.42 E-value=96 Score=27.06 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=28.4
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 10 ~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
+-|+.|-..-...||..|+++|++|.++=.+...
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3567799999999999999999999998765433
No 312
>PRK12377 putative replication protein; Provisional
Probab=43.38 E-value=94 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=25.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.++|.-.++.|-..=..+||++|.+.|+.|.+++.+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 3556666666777777777777777777777766543
No 313
>PRK07004 replicative DNA helicase; Provisional
Probab=43.17 E-value=1.3e+02 Score=31.50 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++..-|+.|-..-.+.+|..++. .|+.|.|++.....+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 345667899999999999998874 699999999987765543
No 314
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=43.16 E-value=91 Score=29.48 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=47.4
Q ss_pred CEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEE
Q 009851 32 FRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCF 111 (524)
Q Consensus 32 H~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~v 111 (524)
....+..++.+....+.. |++...+-...+.. .. ....+.++.+.+++ .+..+|
T Consensus 150 ~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~~~~~~--~p------------s~~~l~~l~~~ik~---~~v~~i 203 (256)
T PF01297_consen 150 GRPVVVYHDAFQYFAKRY---------GLKVIGVIEISPGE--EP------------SPKDLAELIKLIKE---NKVKCI 203 (256)
T ss_dssp GGEEEEEESTTHHHHHHT---------T-EEEEEESSSSSS--SS-------------HHHHHHHHHHHHH---TT-SEE
T ss_pred CCeEEEEChHHHHHHHhc---------CCceeeeecccccc--CC------------CHHHHHHHHHHhhh---cCCcEE
Confidence 356666677777777665 67765544211111 11 12234455555555 889999
Q ss_pred EECCCch--hHHHHHHHcCCceEEEccc
Q 009851 112 IADGNIG--WSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 112 I~D~~~~--~~~~~A~~lgiP~i~~~~~ 137 (524)
+++.... .+..+|+..|+|.+.+.+.
T Consensus 204 ~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 204 FTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred EecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 9998766 4678899999999886654
No 315
>PRK08840 replicative DNA helicase; Provisional
Probab=43.08 E-value=1.4e+02 Score=31.15 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++-.-|+.|-..-.+.+|...+. .|+.|.|++.....+.+.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHH
Confidence 345667899999999999999874 599999999987665543
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=42.95 E-value=2.3e+02 Score=28.26 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
.|+|+-.++.|-..-...||..|.++|++|.+++.+.+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 355777788999999999999999999999998887554
No 317
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=42.62 E-value=2e+02 Score=27.67 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEEEcc
Q 009851 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 92 ~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~~~~ 136 (524)
.+.++++.+++ .+..+|+++.... .+-.+|+..|++.+.+.+
T Consensus 208 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 208 QLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 35555555555 7899999998776 466789999999887654
No 318
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.60 E-value=28 Score=30.99 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=23.3
Q ss_pred cCCCcceEEecCChhhHHHHHHcCCceeccCccc
Q 009851 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFG 415 (524)
Q Consensus 382 ~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~ 415 (524)
.+..++.+|++||...+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 5577777999999999888877 99999999853
No 319
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=42.26 E-value=1.5e+02 Score=30.65 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++...|+.|-..-.+.+|..++. .|+.|.+++.....+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 345667788999999999999876 599999999987665543
No 320
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.25 E-value=34 Score=35.71 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCCcC
Q 009851 3 RPRVLVMPAPAQGHVIP------------LLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p------------~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
..||++...|+.-.+.| -..||+++..+|++||+++.+..
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 45788777777766655 46899999999999999997653
No 321
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=42.25 E-value=86 Score=31.62 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=37.1
Q ss_pred eEEecCChhhHHHHHHcCCcee-----------ccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhc
Q 009851 388 CFLSHCGWNSTMEGVSNGIPFL-----------CWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 456 (524)
Q Consensus 388 ~~ItHgG~gs~~Eal~~GvP~v-----------~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~ 456 (524)
++-|+ |..++..|+.+|.|+. .+|..++| +-+....+-..+.+ ++.+++..+|.++++
T Consensus 247 GVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~---tf~~a~~~~d~vvv-------V~~~ei~aaI~~l~e 315 (457)
T KOG1250|consen 247 GVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGEN---TFELAQKLVDRVVV-------VEDDEIAAAILRLFE 315 (457)
T ss_pred EEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHH---HHHHHHhcCceEEE-------eccHHHHHHHHHHHH
Confidence 35555 5778999999999873 22333333 22222212222333 678999999999997
Q ss_pred CHH
Q 009851 457 NQD 459 (524)
Q Consensus 457 ~~~ 459 (524)
|++
T Consensus 316 dek 318 (457)
T KOG1250|consen 316 DEK 318 (457)
T ss_pred hhh
Confidence 764
No 322
>PRK07206 hypothetical protein; Provisional
Probab=42.19 E-value=1.1e+02 Score=31.23 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
++++++-..+. ...+++++.++|+++.++....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46777764322 3468999999999998888764
No 323
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=42.19 E-value=1e+02 Score=26.80 Aligned_cols=97 Identities=21% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhC-CCEEEEEeCCc---ChhhHHHhhhcCCCCCCCe-EEEecCCCCCCCCCcccHHHHHHHHHHhccHH
Q 009851 18 IPLLEFSQCLAKH-GFRVTFVNTDY---NHKRVVESLQGKNYLGEQI-HLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGK 92 (524)
Q Consensus 18 ~p~l~LA~~L~~r-GH~Vt~~~~~~---~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (524)
.-.+..|++|++. |.+|+.++... ..+.+++.... .|+ +.+.+++..-.. .+. ......
T Consensus 18 ~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~~~---~~~--------~~~a~~ 81 (164)
T PF01012_consen 18 LEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPALAE---YDP--------EAYADA 81 (164)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGGTT---C-H--------HHHHHH
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCccccc---cCH--------HHHHHH
Confidence 3467889999885 78888887653 22222222110 144 334433211110 011 112223
Q ss_pred HHHHHHHHhcCCCCCccEEEECCCch---hHHHHHHHcCCceEEEcc
Q 009851 93 LEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 93 ~~~ll~~l~~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
+.++++. .+||+|++-.... .+..+|.+||.|++.-..
T Consensus 82 l~~~~~~------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 82 LAELIKE------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHH------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHh------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 4555555 6899999876544 367889999999987443
No 324
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.08 E-value=1.5e+02 Score=27.40 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 7 LVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 7 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
++.---+.|--.-...++-.+...||+|+++++...
T Consensus 32 lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 32 LIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred EEECCCCccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 344444678888889999999999999999999864
No 325
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.94 E-value=93 Score=30.88 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=60.0
Q ss_pred CEEEEEcCCCc-c----CHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccH
Q 009851 4 PRVLVMPAPAQ-G----HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (524)
Q Consensus 4 ~~il~~~~~~~-G----H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (524)
..|+|.|..+. . -..-+.+|++.|.++|.+|.++.++...+..++... .......
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~~------------- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAVI------------- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCccc-------------
Confidence 46777776233 2 245688999999999999999988854444433321 0100000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEccc
Q 009851 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (524)
-..+..+.++..-+ ..-|++|+.- .+..++|..+|.|.|.+...
T Consensus 236 --------l~~k~sL~e~~~li-----~~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 --------LAGKTSLEELAALI-----AGADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --------cCCCCCHHHHHHHH-----hcCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 01122234444433 2458888653 45689999999999998744
No 326
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=41.89 E-value=38 Score=31.78 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~ 47 (524)
|++--.|+.+=+.=.+.|++.|.++ ||+|.++.++...+.+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4444434334447899999999999 99999999987666654
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.77 E-value=1.9e+02 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-C-CEEEEEeCCcCh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKH-G-FRVTFVNTDYNH 43 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~r-G-H~Vt~~~~~~~~ 43 (524)
|+|+-..+.|-..-...||..++.+ | +.|.+++.+.+.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 4466666779999999999999987 6 999999998764
No 328
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=41.69 E-value=3e+02 Score=25.83 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=36.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCcChhhHHHh
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG-FRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rG-H~Vt~~~~~~~~~~i~~~ 49 (524)
+||++.-=|+.|-..-.--|+++|.++| ++|.++=.+.+...-...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~L 47 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhc
Confidence 3688888888888887777799998887 999999887765544443
No 329
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=41.50 E-value=1.9e+02 Score=23.35 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHH
Q 009851 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (524)
Q Consensus 16 H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (524)
+-.-++.+|+.|.+.|+++ ++++.....+++. |+....+...... ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~~-----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA---------GIPVRAVSKRHED-----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc---------CCceEEEEecCCC-----------------CCcHHHH
Confidence 5567889999999999988 3555666666664 5655443221110 1122333
Q ss_pred HHHHHhcCCCCCccEEEECC--Cc--------hhHHHHHHHcCCceEE
Q 009851 96 LIEEINSREDEKIDCFIADG--NI--------GWSMEIAKKMNVRGAV 133 (524)
Q Consensus 96 ll~~l~~~~~~~~D~vI~D~--~~--------~~~~~~A~~lgiP~i~ 133 (524)
++++- .++|+||.-+ .. +....+|-..|||++.
T Consensus 62 ~i~~~-----g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 62 AIAEK-----GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHhCC-----CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 33220 3788888622 22 2345668888999987
No 330
>PRK08939 primosomal protein DnaI; Reviewed
Probab=41.18 E-value=86 Score=30.75 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
.+++...++.|-..=+.+||.+|+++|..|+|+..+.....+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 466777777788888889999999999999998876544333
No 331
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=41.13 E-value=2.8e+02 Score=27.44 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcChh--hHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHH-hccHHHH
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDYNHK--RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQ-VMPGKLE 94 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~--~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 94 (524)
.-+.+|++.|.++|.+|.++..+...+ ..++... .. ... . ..+ ..+..+.
T Consensus 200 e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~-------~~---------~~~----~-------~~~l~g~~sL~ 252 (344)
T TIGR02201 200 DRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQ-------GC---------QTP----R-------VTSLAGKLTLP 252 (344)
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHh-------hC---------CCC----c-------ccccCCCCCHH
Confidence 456789999988899988887654222 2222100 00 000 0 000 0111244
Q ss_pred HHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEcc
Q 009851 95 ELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 95 ~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (524)
++..-+ .+.|++|+. ..+.+++|..+|+|.|.++.
T Consensus 253 el~ali-----~~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 253 QLAALI-----DHARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHHH-----HhCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 444444 346899977 35679999999999998764
No 332
>PRK06904 replicative DNA helicase; Validated
Probab=41.09 E-value=1.4e+02 Score=31.25 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++-.-|+.|-..-.+.+|...+. .|+.|.|++.....+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 345667899999999999998875 599999999987765544
No 333
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=41.02 E-value=4.6e+02 Score=27.68 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=56.8
Q ss_pred eEEeccChhh---hhcCCCcceEEe--cCChhhH-HHHHHcCC----ceeccCcccchhhhHHhhccccceeeEEecCCC
Q 009851 370 QMISWAPQLR---VLNHPSIACFLS--HCGWNST-MEGVSNGI----PFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 439 (524)
Q Consensus 370 ~v~~~vpq~~---lL~~~~v~~~It--HgG~gs~-~Eal~~Gv----P~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~ 439 (524)
.+.+.+|+.+ ++.-++| ++|| .-|+|-+ .|.++++. |+|+=-+. -|. ++ +.-|+.+++
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVNP--- 432 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTNP--- 432 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEECC---
Confidence 4457888875 4545666 2333 3488854 59999877 44432222 222 22 455778865
Q ss_pred CCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHh
Q 009851 440 GIITREEIKNKVDQVLGNQ--DFKARALELKEKAMS 473 (524)
Q Consensus 440 ~~~t~~~l~~ai~~~l~~~--~~r~~a~~l~~~~~~ 473 (524)
.+.++++++|.++|+.+ +-++|.+++.+.++.
T Consensus 433 --~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~ 466 (487)
T TIGR02398 433 --YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY 466 (487)
T ss_pred --CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 89999999999999865 445666666665554
No 334
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=40.99 E-value=2.5e+02 Score=25.49 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 2 SRPRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 2 ~~~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
.+.++-|...+ ..|-..-++.-++....+|-.|.++++..+
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 34556655544 569999999999999999999999998754
No 335
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=40.40 E-value=93 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=29.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 9 MPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 9 ~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
++.|+.|-.--...||+.|.++|++|.+++-.+-
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4578889998899999999999999999987543
No 336
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=40.13 E-value=1.2e+02 Score=30.32 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=59.5
Q ss_pred CceEEEeecCC---CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhc-CCe-eEEe--ccChh-hh
Q 009851 309 SSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVA-ARG-QMIS--WAPQL-RV 380 (524)
Q Consensus 309 ~~vV~vs~GS~---~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~-~n~-~v~~--~vpq~-~l 380 (524)
++.|.+..|+. -..+.+.+.++++.|...+.++++..+.+.. ....-+.+.+... .++ .+.+ .+.+. .+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 45788888875 3467889999999997778887765443200 0000111221111 122 2233 34444 78
Q ss_pred hcCCCcceEEecCChhhHHHHHHcCCceecc
Q 009851 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCW 411 (524)
Q Consensus 381 L~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~ 411 (524)
++++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 260 i~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 260 IDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 866666 9986 567889999999999874
No 337
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.11 E-value=2.2e+02 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.1
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.++|++|.+.. +..+|+++|||++.+.
T Consensus 436 ~~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECch---HHHHHHHcCCCEEEec
Confidence 78999999854 6788999999998764
No 338
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.05 E-value=3.2e+02 Score=30.50 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=31.3
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
+.|++.++ .++.|-..-...||..|+..|++|.++=.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34666555 44668888899999999999999999876544
No 339
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=39.71 E-value=1.2e+02 Score=28.80 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHHHH
Q 009851 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAASVA 143 (524)
Q Consensus 106 ~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~~~ 143 (524)
..||+|| .|+..- .+..=|.++|||.|.+.-+.+-+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~ 195 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDG 195 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcc
Confidence 4688766 566544 6788899999999998766554333
No 340
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=39.63 E-value=24 Score=33.30 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 446689999999999999999976
No 341
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=39.63 E-value=3e+02 Score=26.13 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
+++.-.|+.|-..-.+.+|...+++|..|.+++.....
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 44666778899999999999999999999999987543
No 342
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=39.47 E-value=65 Score=31.15 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEecCChhhHH
Q 009851 320 TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTM 399 (524)
Q Consensus 320 ~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ItHgG~gs~~ 399 (524)
+..+.+..+++.+|+...+.+.||...++.+. ..+.++++...+-++|++ ||=+.-..+++
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga-----------------~rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYGA-----------------NRLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH-----------------HHhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 34456667779999999999999999877321 124455555555567776 77777777777
Q ss_pred HHHHc--CCceeccCcc
Q 009851 400 EGVSN--GIPFLCWPYF 414 (524)
Q Consensus 400 Eal~~--GvP~v~~P~~ 414 (524)
-+++. |++.+-=|..
T Consensus 105 ~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 105 LALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHhcCceEEECccc
Confidence 77654 6666655543
No 343
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=39.10 E-value=3.2e+02 Score=28.56 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
+++.-.|+.|-..-++.++..++++|+.|.+++.....+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 345566788999999999999999999999999877655543
No 344
>PRK06526 transposase; Provisional
Probab=39.10 E-value=58 Score=30.94 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
.+++++-.++.|-..=...|+.++.++|+.|.|++.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 466677666777777777778888888888777544
No 345
>PRK05748 replicative DNA helicase; Provisional
Probab=39.09 E-value=1.9e+02 Score=30.16 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcChhhHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 47 (524)
+++...|+.|-..-.+.+|...+. .|+.|.|++.....+.+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 456667899999999999999874 599999999887765543
No 346
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=38.96 E-value=1.6e+02 Score=31.22 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCccEEE----ECCCchhHHHHHHHcCCceEEEccchHH
Q 009851 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSAA 140 (524)
Q Consensus 106 ~~~D~vI----~D~~~~~~~~~A~~lgiP~i~~~~~~~~ 140 (524)
..+|.+| ||-..+..+..|-++++|.|.+...+..
T Consensus 88 ~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm~ 126 (535)
T TIGR00110 88 HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPML 126 (535)
T ss_pred CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCcc
Confidence 7899777 8988898899999999999998766543
No 347
>PLN02470 acetolactate synthase
Probab=38.84 E-value=1.6e+02 Score=31.87 Aligned_cols=29 Identities=7% Similarity=0.280 Sum_probs=23.7
Q ss_pred CCcceEEecCChh------hHHHHHHcCCceeccC
Q 009851 384 PSIACFLSHCGWN------STMEGVSNGIPFLCWP 412 (524)
Q Consensus 384 ~~v~~~ItHgG~g------s~~Eal~~GvP~v~~P 412 (524)
.+++++++|.|-| .+.+|...++|||++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 4566689998854 7889999999999984
No 348
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.78 E-value=1.6e+02 Score=26.53 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC
Q 009851 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (524)
Q Consensus 17 ~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 66 (524)
-.-.+.||+.|.+.|.++. ++....+.+++. |+.+..+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhh
Confidence 4557899999999999883 565677777775 67666554
No 349
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=38.58 E-value=1e+02 Score=30.77 Aligned_cols=96 Identities=7% Similarity=0.005 Sum_probs=58.6
Q ss_pred CCceEEEeecCC----CCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcC----Ce-eEEe--ccC
Q 009851 308 PSSVVYVSFGSF----TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAA----RG-QMIS--WAP 376 (524)
Q Consensus 308 ~~~vV~vs~GS~----~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~----n~-~v~~--~vp 376 (524)
+++.|.+.-|+. -..+.+.+.++++.+...+.+++..-+.. +.+.-+.+.+..+. ++ .+.+ .+.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~-----e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~ 253 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK-----DHEAGNEILAALNTEQQAWCRNLAGETQLE 253 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH-----hHHHHHHHHHhcccccccceeeccCCCCHH
Confidence 356888888873 34678889999998876677766543221 11111222222221 11 2223 234
Q ss_pred hh-hhhcCCCcceEEecCChhhHHHHHHcCCceecc
Q 009851 377 QL-RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCW 411 (524)
Q Consensus 377 q~-~lL~~~~v~~~ItHgG~gs~~Eal~~GvP~v~~ 411 (524)
+. .+++++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 254 el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 254 QAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 44 68866666 9985 568899999999999873
No 350
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=38.41 E-value=2.5e+02 Score=24.75 Aligned_cols=30 Identities=20% Similarity=0.065 Sum_probs=24.0
Q ss_pred CCccEEEECCCch---hHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~---~~~~~A~~lgiP~i~~~ 135 (524)
.+||+|++-.... .+..+|.+||.|++.=.
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 5799999876655 47889999999998743
No 351
>PRK08116 hypothetical protein; Validated
Probab=38.11 E-value=3.3e+02 Score=26.00 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=24.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
++|.-.++.|-..=..++|++|.++|+.|.+++...
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 455555566666666678888887787777766443
No 352
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.00 E-value=1.8e+02 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.024 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+++++ + |+.|+ --..|++.|+++||+|++++...
T Consensus 7 ~~vlI-t-Gasg~--iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 7 RVALV-T-GAARG--LGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CEEEE-e-CCCch--HHHHHHHHHHHCCCeEEEEeCCC
Confidence 34554 3 44555 45788999999999997766543
No 353
>PRK08181 transposase; Validated
Probab=37.86 E-value=88 Score=30.04 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
+++|+-.++.|-..=..++|.++.++|+.|.|++.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 45555555555555555666666666666666554
No 354
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=37.80 E-value=1.7e+02 Score=28.42 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=35.6
Q ss_pred cceEEecCChhhHHHHHHc----CCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 386 v~~~ItHgG~gs~~Eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
++.+|+-||-||+.+++.. ++|++.+-. - .+|.. ...+.+++.++|.+++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~--------G------~lGFL------~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH--------G------RLGFI------TDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC--------C------Ccccc------ccCCHHHHHHHHHHHHcC
Confidence 4459999999999999874 566654431 0 22322 235778999999998854
No 355
>CHL00175 minD septum-site determining protein; Validated
Probab=37.79 E-value=3.1e+02 Score=26.23 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=29.5
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.|++.+. -|+.|-..-...||..|+++|++|.++=.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3555443 4567888999999999999999998885543
No 356
>PRK10818 cell division inhibitor MinD; Provisional
Probab=37.64 E-value=3.2e+02 Score=25.82 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.0
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 10 ~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.-|+.|-..-...||..|+++|++|.++=.+.
T Consensus 10 ~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 35677999999999999999999999987665
No 357
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=37.50 E-value=2e+02 Score=25.09 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=58.1
Q ss_pred cCCCccCHHHH-HHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCC--------CC--CcccH
Q 009851 10 PAPAQGHVIPL-LEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEP--------WE--DRNDL 78 (524)
Q Consensus 10 ~~~~~GH~~p~-l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~--------~~--~~~~~ 78 (524)
.+...+.+..+ -.+|++|.++|++|.=++.......-.. ...+....++++... .. -.-+.
T Consensus 5 ~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~--------~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~ 76 (159)
T PF10649_consen 5 VYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG--------RCDMDLRDLPSGRRIRISQDLGPGSRGCRLDP 76 (159)
T ss_pred EcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC--------ccceEEEECCCCCEEEEeeccCCCCcccccCH
Confidence 33444555554 4689999999999987776542211111 125666666543221 10 00111
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch---------hHHHHHHHcCCceEEEccch
Q 009851 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---------WSMEIAKKMNVRGAVFWPSS 138 (524)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~---------~~~~~A~~lgiP~i~~~~~~ 138 (524)
.. +......+-..+. ..+|++|.+-|.- ..+..|-..|||+++..+..
T Consensus 77 ~~--------La~A~~~l~~al~----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 77 GA--------LAEASAALRRALA----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HH--------HHHHHHHHHHHHh----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 11 1111122222332 4799999997743 13445677799998865543
No 358
>PRK06182 short chain dehydrogenase; Validated
Probab=37.12 E-value=2e+02 Score=27.18 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|+..+ ++++. +.|.+ -..+|++|+++||+|..+...
T Consensus 1 ~~~k~-vlItG-asggi--G~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 1 MQKKV-ALVTG-ASSGI--GKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCCCE-EEEEC-CCChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 54444 44443 33433 567999999999999887653
No 359
>PRK12743 oxidoreductase; Provisional
Probab=37.02 E-value=1.6e+02 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=21.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
.++++.++ |.+ -..+|+.|+++||+|.++..
T Consensus 4 ~vlItGas-~gi--G~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 4 VAIVTASD-SGI--GKACALLLAQQGFDIGITWH 34 (256)
T ss_pred EEEEECCC-chH--HHHHHHHHHHCCCEEEEEeC
Confidence 45555433 333 37799999999999987754
No 360
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.57 E-value=3e+02 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=20.8
Q ss_pred CCccEEEECCCchh----HHHHHHHcCCceEEEcc
Q 009851 106 EKIDCFIADGNIGW----SMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 106 ~~~D~vI~D~~~~~----~~~~A~~lgiP~i~~~~ 136 (524)
.++|.||....... ....+...|||+|.+..
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 57898887544332 23455678999998753
No 361
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=36.36 E-value=37 Score=34.67 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=25.0
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEE
Q 009851 6 VLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFV 37 (524)
Q Consensus 6 il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~ 37 (524)
|++-.. .+.|-..-.+.|.++|++||++|.-+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 444433 35599999999999999999998754
No 362
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=36.34 E-value=2.5e+02 Score=24.34 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
...+.+.|.++|+.+.++|.....
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~ 113 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRD 113 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchH
Confidence 466778899999999999986544
No 363
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=36.33 E-value=1.2e+02 Score=32.32 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=29.1
Q ss_pred CCccEEE----ECCCchhHHHHHHHcCCceEEEccchH
Q 009851 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSA 139 (524)
Q Consensus 106 ~~~D~vI----~D~~~~~~~~~A~~lgiP~i~~~~~~~ 139 (524)
..+|.+| ||-..|..+.++-.++||.|.+...+.
T Consensus 119 ~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM 156 (575)
T COG0129 119 HPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPM 156 (575)
T ss_pred cCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcC
Confidence 7799877 888889888889999999999877664
No 364
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=35.85 E-value=2.5e+02 Score=27.64 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
+||+|+..+. ..+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEEcC
Confidence 3788886553 3367778899999998766654
No 365
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=35.56 E-value=51 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|+..||.|+-.|-.| ..+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 787889888666544 57899999999999988653
No 366
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.33 E-value=57 Score=34.10 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
.+||++...|+ .-.+=...|++.|.++||+|.++.++.....+..
T Consensus 70 ~k~IllgVtGs-IAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGG-IAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccH-HHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 46777666554 3455888999999999999999999987776654
No 367
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=35.19 E-value=2.8e+02 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCEEEEEeCCcC
Q 009851 21 LEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 21 l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
.++.+.|.++|+.+.+++...+
T Consensus 93 ~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 93 KNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHCCCeEEEEeCCcc
Confidence 5677889999999999986543
No 368
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=34.97 E-value=70 Score=32.37 Aligned_cols=71 Identities=15% Similarity=0.287 Sum_probs=45.3
Q ss_pred CcceEEecCChhhHHHHHHc------------C-----CceeccCcccchhhhHHhhccccceee-EEecCCCCCCCHHH
Q 009851 385 SIACFLSHCGWNSTMEGVSN------------G-----IPFLCWPYFGDQFLNERYICDFWKVGL-KFDRDEGGIITREE 446 (524)
Q Consensus 385 ~v~~~ItHgG~gs~~Eal~~------------G-----vP~v~~P~~~DQ~~na~rv~~~lG~G~-~~~~~~~~~~t~~~ 446 (524)
...+++|.||..+..-|+.+ | .|++.++-.. ++-+.+.. ..+|+|+ .++.+++..++.++
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~~~~~md~~~ 180 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTDEDGRMDIEA 180 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BBTTSSB-HHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCCcchhhhHHH
Confidence 36789999998888777533 2 4566555433 33333333 3379994 34446567789999
Q ss_pred HHHHHHHHhcC
Q 009851 447 IKNKVDQVLGN 457 (524)
Q Consensus 447 l~~ai~~~l~~ 457 (524)
|.++|.+...+
T Consensus 181 L~~~l~~~~~~ 191 (373)
T PF00282_consen 181 LEKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhhhcccccc
Confidence 99999888754
No 369
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=34.60 E-value=3.5e+02 Score=28.15 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=59.2
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHH
Q 009851 6 VLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (524)
Q Consensus 6 il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (524)
|++.... ..|-..-...|++.|+++|++|..+-+.... +. +.+ +..-.+.+.. ....+ +
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~--~D----------~~~--~~~~~g~~~~-~ld~~---~-- 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY--ID----------PMF--HTQATGRPSR-NLDSF---F-- 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC--CC----------HHH--HHHHhCCchh-hCCcc---c--
Confidence 4444333 4588899999999999999999998653210 00 000 0000000000 00000 0
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEECCC-------c-----hhHHHHHHHcCCceEEEccch
Q 009851 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGN-------I-----GWSMEIAKKMNVRGAVFWPSS 138 (524)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~-------~-----~~~~~~A~~lgiP~i~~~~~~ 138 (524)
.-.+.+.+.++.+. .+.|++|++.. . .....+|+.++.|++.+....
T Consensus 62 ---~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 62 ---MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred ---CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 11233444444432 46799997765 1 237799999999999987654
No 370
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.56 E-value=48 Score=30.53 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=66.2
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcC-hhhHHHhhhcCCCCCCCeEE--EecCCCCCCCCCcccHHHHHHHHHH--
Q 009851 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYN-HKRVVESLQGKNYLGEQIHL--VSIPDGMEPWEDRNDLGKLIEKCLQ-- 87 (524)
Q Consensus 13 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~-~~~i~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (524)
+..|+...+.+...++.||=.+.|+++... .+.++.+..+. .+..+ ..++..+..+ ......+..
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~----~gy~~~~~w~~G~lTN~------~~l~g~~~~~~ 159 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA----GGYSHNRKWLGGLLTNA------RELFGALVRKF 159 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh----cCceeeeeeccceeecc------hhhcccccccc
Confidence 447788889999999999999999998754 45555443211 12211 2222222222 111111100
Q ss_pred hccHHHHHHHHHHhcCCCCCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHHHHHHhhcc
Q 009851 88 VMPGKLEELIEEINSREDEKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAASVALVFRIP 149 (524)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (524)
.+.+....++.. ..+|+|| .|..-. .++.-|.+++||.|.+.-+.+.+....+++|
T Consensus 160 ~~~pd~~~f~~t------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVP 217 (251)
T KOG0832|consen 160 LSLPDALCFLPT------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVP 217 (251)
T ss_pred cCCCcceeeccc------CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCCCccceeeccC
Confidence 011111112222 5568766 566655 6888899999999998766554444333333
No 371
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=34.46 E-value=71 Score=27.97 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 66 (524)
+.++|+++-++++||. -|.-|.+-|++|++..-+....+..... .|++..++.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~-------~Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKA-------DGFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHH-------TT-ECCEHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHH-------CCCeeccHH
Confidence 4578999999999985 5788999999999998876544433321 366655444
No 372
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=34.02 E-value=1.5e+02 Score=26.41 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCCccEEEECCC--chhHHHHHHHcCCceEEEc
Q 009851 95 ELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 95 ~ll~~l~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~i~~~ 135 (524)
.+.+...+ .++|.|++=.. .+.+..+|.++|+|++.+-
T Consensus 44 ~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKD---DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcc---cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 44444444 67999984332 3368899999999999864
No 373
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=33.68 E-value=2.4e+02 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEE
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (524)
.+||++|...+ ...+|+++|||++.+
T Consensus 357 ~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCc---cchhhhhcCCCEEec
Confidence 68999999855 447899999999886
No 374
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=33.52 E-value=2.5e+02 Score=29.18 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=22.2
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEE
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (524)
.+||++|.... +..+|+++|||++.+
T Consensus 386 ~~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 386 LKPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred cCCCEEEEcCc---chhhhhhcCCCeEec
Confidence 78999998854 678999999999875
No 375
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.45 E-value=77 Score=31.38 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCccEEEECCCchh----------HHHHHHHcCCceEEEc
Q 009851 93 LEELIEEINSREDEKIDCFIADGNIGW----------SMEIAKKMNVRGAVFW 135 (524)
Q Consensus 93 ~~~ll~~l~~~~~~~~D~vI~D~~~~~----------~~~~A~~lgiP~i~~~ 135 (524)
.+.+++-+++ .+||++|+.+.+.. +..+.++++||.+.-.
T Consensus 69 ~~~i~~mv~~---~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 69 LKKILEMVKK---LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 3444444444 89999999986543 2245678999999743
No 376
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.44 E-value=4.4e+02 Score=29.56 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=31.1
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 4 PRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 4 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
.|++.++ -|+.|-..-...||..|++.|++|.++=.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4555444 55779999999999999999999999876644
No 377
>PRK04328 hypothetical protein; Provisional
Probab=33.43 E-value=4.1e+02 Score=24.97 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
-+++.-.|+.|-..-.+.++.+-+++|+.+.+++.....+.+.+
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 35566677889988888888887788999999998776655443
No 378
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=33.41 E-value=86 Score=29.25 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 009851 20 LLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
-.+||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 468899999999999999754
No 379
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.40 E-value=3.1e+02 Score=23.42 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=59.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (524)
+|++.. .-++-.-++.+|+.|.+. ||++ +.+....+.+++. .|+....+-.+ +.+
T Consensus 6 ~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi~~-~~g---------- 62 (142)
T PRK05234 6 RIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLLSG-PLG---------- 62 (142)
T ss_pred EEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEEcC-CCC----------
Confidence 444444 557778899999999999 9985 4555666666654 15554443111 100
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEE--CCCch--------hHHHHHHHcCCceEEEcc
Q 009851 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIA--DGNIG--------WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~--D~~~~--------~~~~~A~~lgiP~i~~~~ 136 (524)
..+.+-++++. .++|+||. |+... .-..+|-..|||++.-..
T Consensus 63 ------g~~~i~~~I~~------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 63 ------GDQQIGALIAE------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred ------CchhHHHHHHc------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 12234455555 79999997 43322 234568889999987443
No 380
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.30 E-value=1.8e+02 Score=28.30 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=36.3
Q ss_pred cceEEecCChhhHHHHHHc----CCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 386 v~~~ItHgG~gs~~Eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
++.+|+=||-||+.+++.. ++|++.+... .+|.. ..++.+++.++|.+++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcC
Confidence 4459999999999999753 5676655431 12211 236789999999999864
No 381
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=33.29 E-value=1.6e+02 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCC
Q 009851 19 PLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 19 p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.+-.+...|.++|++|++++-.
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~t 34 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEECE
T ss_pred hhHHHHHHHHhcCCeEEEEEec
Confidence 4445667788999999988743
No 382
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=33.11 E-value=60 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHHH
Q 009851 443 TREEIKNKVDQVLGN-QDFKARALEL 467 (524)
Q Consensus 443 t~~~l~~ai~~~l~~-~~~r~~a~~l 467 (524)
|+++|.+||..+..+ -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 578999999999876 4677766655
No 383
>PRK08177 short chain dehydrogenase; Provisional
Probab=33.00 E-value=2.6e+02 Score=25.47 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=22.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.++++.++ | .--..+|+.|+++|++|+++....
T Consensus 3 ~vlItG~s-g--~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 3 TALIIGAS-R--GLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEEeCCC-c--hHHHHHHHHHHhCCCEEEEEeCCC
Confidence 34555332 3 344568999999999999887653
No 384
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.93 E-value=1.7e+02 Score=25.46 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=26.4
Q ss_pred ChhhhhcCCCcceEEecCChhhHHH---HHHcCCceeccCcc
Q 009851 376 PQLRVLNHPSIACFLSHCGWNSTME---GVSNGIPFLCWPYF 414 (524)
Q Consensus 376 pq~~lL~~~~v~~~ItHgG~gs~~E---al~~GvP~v~~P~~ 414 (524)
+-..++...+-..++-=||.||+.| ++.+++|+++++..
T Consensus 83 ~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 83 ARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred hHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 3445554434345666788998765 58899999988753
No 385
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=32.86 E-value=1.5e+02 Score=25.78 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=21.2
Q ss_pred cceEEecCCh------hhHHHHHHcCCceeccCc
Q 009851 386 IACFLSHCGW------NSTMEGVSNGIPFLCWPY 413 (524)
Q Consensus 386 v~~~ItHgG~------gs~~Eal~~GvP~v~~P~ 413 (524)
...+++|+|- +.+.||...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3347777774 477889999999999853
No 386
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.82 E-value=4.3e+02 Score=25.47 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
...+|+++-.|..|. .+|+.|.++||.|.++......+.....
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 356788888887775 5799999999999999988776555443
No 387
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=32.73 E-value=91 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
++..+++++-.|..| ...++.|.+.|++||++.+....+...
T Consensus 8 l~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~~~~l~~ 49 (202)
T PRK06718 8 LSNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPELTENLVK 49 (202)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCCCHHHHH
No 388
>PRK14098 glycogen synthase; Provisional
Probab=32.41 E-value=66 Score=33.95 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=27.5
Q ss_pred CEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMPAP------AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~~~------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+||+|++.- +.|=-.-.-+|.++|+++||+|.++.+..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 678877621 12333445688999999999999999964
No 389
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=32.34 E-value=3.8e+02 Score=26.94 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCC-CEEEEEeCCcChh-----hHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHH
Q 009851 20 LLEFSQCLAKHG-FRVTFVNTDYNHK-----RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKL 93 (524)
Q Consensus 20 ~l~LA~~L~~rG-H~Vt~~~~~~~~~-----~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (524)
.-.|+++|.+.| .+|.+++...... .+.+... ..++++..+....+.. ....+
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~-----~~~~~~~~~~~~~~~p----------------~~~~v 69 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLK-----EAGIEVVIFDGVEPNP----------------TLSNV 69 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHH-----HcCCeEEEECCCCCCC----------------CHHHH
Confidence 457788888777 7888887764332 3333321 1256665554322111 12234
Q ss_pred HHHHHHHhcCCCCCccEEEECCC--ch-hHHHHHHHc------------------CCceEEEccchH
Q 009851 94 EELIEEINSREDEKIDCFIADGN--IG-WSMEIAKKM------------------NVRGAVFWPSSA 139 (524)
Q Consensus 94 ~~ll~~l~~~~~~~~D~vI~D~~--~~-~~~~~A~~l------------------giP~i~~~~~~~ 139 (524)
.++++.++. .++|+||.=.- .. .+..+|..+ ++|+|.+-|+..
T Consensus 70 ~~~~~~~~~---~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~g 133 (370)
T cd08551 70 DAAVAAYRE---EGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAG 133 (370)
T ss_pred HHHHHHHHh---cCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCc
Confidence 445555544 67899984322 22 344455554 789888776654
No 390
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=32.25 E-value=3.9e+02 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=25.7
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 4 PRVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.+|+++- .|..|. .+|+.|.++||+|+++...
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 5788886 666664 6899999999999999864
No 391
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.16 E-value=4.4e+02 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.0
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.|++.. -|+.|-..-.-+||..|++.|++|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 444444 567799999999999999999999888543
No 392
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.10 E-value=3.2e+02 Score=25.48 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=24.6
Q ss_pred CEEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 4 PRVLVMPAPAQ-GHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 4 ~~il~~~~~~~-GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
-|+++++.++. +-+ -..+|++|+++|++|.+..-
T Consensus 7 ~k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 7 GKKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 46777776652 222 37899999999999987643
No 393
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.08 E-value=1.3e+02 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=36.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 48 (524)
|+|+-.-+.|-...+-.+|-.+.++|..+-+++.+.++.-...
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD 146 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD 146 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH
Confidence 4477777889999999999999999999999999877654433
No 394
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.98 E-value=3.1e+02 Score=23.13 Aligned_cols=60 Identities=7% Similarity=0.148 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD 67 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 67 (524)
+.+|++-+..+-+|-.----++..|.+.|++|..+......+.+-+.-. ..+.+.+.++.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-----~~~adiVglS~ 60 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-----ETKADAILVSS 60 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----HcCCCEEEEec
Confidence 3578999999999999999999999999999999998766444433211 12556666553
No 395
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=31.83 E-value=34 Score=27.82 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=38.7
Q ss_pred HHcCCceeccCcccchhhhHHhhccccceeeEEec-----------CCCCCCCHHHHHHHHHHHh
Q 009851 402 VSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR-----------DEGGIITREEIKNKVDQVL 455 (524)
Q Consensus 402 l~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~-----------~~~~~~t~~~l~~ai~~~l 455 (524)
+.|+.++-..|..+|.-.|+-|+.+ |.-..++. ..-...+.|+++.+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 4566778889999999999999976 77665543 1123478899999987654
No 396
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.80 E-value=4.1e+02 Score=24.70 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=20.8
Q ss_pred CCccEEEECCCch----hHHHHHHHcCCceEEEcc
Q 009851 106 EKIDCFIADGNIG----WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 106 ~~~D~vI~D~~~~----~~~~~A~~lgiP~i~~~~ 136 (524)
.++|.||...... ..+..+...|||.|.+..
T Consensus 54 ~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 54 QKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred cCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecC
Confidence 4789888754322 234557788999988753
No 397
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=31.80 E-value=1.9e+02 Score=31.13 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=29.9
Q ss_pred CCccEEE----ECCCchhHHHHHHHcCCceEEEccchHH
Q 009851 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSAA 140 (524)
Q Consensus 106 ~~~D~vI----~D~~~~~~~~~A~~lgiP~i~~~~~~~~ 140 (524)
..+|.+| ||-..+..+..|-+++||.|.+...+..
T Consensus 110 ~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm~ 148 (615)
T PRK12448 110 HCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPME 148 (615)
T ss_pred CCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCcC
Confidence 7899777 8988898999999999999998776543
No 398
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.66 E-value=1.9e+02 Score=25.25 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.1
Q ss_pred cceEEecCChh------hHHHHHHcCCceeccC
Q 009851 386 IACFLSHCGWN------STMEGVSNGIPFLCWP 412 (524)
Q Consensus 386 v~~~ItHgG~g------s~~Eal~~GvP~v~~P 412 (524)
...+++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44488888844 7889999999999986
No 399
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.65 E-value=1e+02 Score=30.11 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=53.8
Q ss_pred CEEEEEcCCCcc--CH--HHHHHHHHHHHhCCCEEEEEeC-CcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccH
Q 009851 4 PRVLVMPAPAQG--HV--IPLLEFSQCLAKHGFRVTFVNT-DYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (524)
Q Consensus 4 ~~il~~~~~~~G--H~--~p~l~LA~~L~~rGH~Vt~~~~-~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (524)
..|++.|..+.. .+ .-+.+|++.|.++|.++.++.+ +...+..++.... .++. .
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~----~~~~---~-------------- 238 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEA----LPGA---V-------------- 238 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhh----CCCC---e--------------
Confidence 345666654321 11 3567899999988988877644 3332332222100 0000 0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEcc
Q 009851 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (524)
+ ..+..+.++..-+ .+.|++|+.- .+.+++|..+|+|.+.++.
T Consensus 239 ------l--~g~~sL~el~ali-----~~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 239 ------V--LPKMSLAEVAALL-----AGADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred ------e--cCCCCHHHHHHHH-----HcCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 0 0111244444444 3468999763 4568899999999998764
No 400
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=31.59 E-value=4.1e+02 Score=25.85 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
.|.+.-.++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 344666778899999999999999999999998876443
No 401
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=31.37 E-value=1e+02 Score=29.79 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCEEEEEeCCcChh
Q 009851 21 LEFSQCLAKHGFRVTFVNTDYNHK 44 (524)
Q Consensus 21 l~LA~~L~~rGH~Vt~~~~~~~~~ 44 (524)
..+|..|+++|++|.++..+....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468899999999999999876653
No 402
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=31.23 E-value=4.3e+02 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhh
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 45 (524)
-+++.-.++.|-......++-.++++|..+.+++.....+.
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~ 66 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTE 66 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHH
Confidence 45566677889999989999999999999999998765443
No 403
>PRK13768 GTPase; Provisional
Probab=31.18 E-value=82 Score=29.88 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=31.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
-+++...++.|-..-...++..|.++|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3556667788999999999999999999999998654
No 404
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=31.11 E-value=81 Score=32.45 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCc--cC-HHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 3 RPRVLVMPAPAQ--GH-VIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 3 ~~~il~~~~~~~--GH-~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
..||+++|.-+. .+ -+...+|++.|.++|.+|.|..+|-
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 467888883322 22 3678899999999999999999975
No 405
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=30.91 E-value=3.9e+02 Score=25.23 Aligned_cols=30 Identities=13% Similarity=-0.066 Sum_probs=20.8
Q ss_pred CCccEEEECCCc----hhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNI----GWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~----~~~~~~A~~lgiP~i~~~ 135 (524)
.++|.||..... ...+..+...|||+|.+.
T Consensus 53 ~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 53 QGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cCCCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 578988875432 234566778999999874
No 406
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=30.84 E-value=62 Score=32.11 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+||.|+-.|..| ..+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 579999877766 467899999999999998643
No 407
>PRK06914 short chain dehydrogenase; Provisional
Probab=30.79 E-value=3.4e+02 Score=25.64 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|+.. .++++ |+.|.+ -..+++.|+++||+|+.+...
T Consensus 1 ~~~k-~~lIt-Gasg~i--G~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 1 MNKK-IAIVT-GASSGF--GLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCC-EEEEE-CCCchH--HHHHHHHHHhCCCEEEEEeCC
Confidence 5443 34444 344433 678899999999999888654
No 408
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.51 E-value=56 Score=29.91 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=29.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|++..+|+.|-....-.||++|.+++|+|..++..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 44666889999999999999999999998876653
No 409
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.50 E-value=65 Score=31.15 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|.-.||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 ~~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 1 MDIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 555688999887777 56889999999999998754
No 410
>PRK08589 short chain dehydrogenase; Validated
Probab=30.49 E-value=2.5e+02 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=24.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.|.++++.++ |.+ -..+|+.|+++|++|.++...
T Consensus 6 ~k~vlItGas-~gI--G~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGAS-TGI--GQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCEEEEECCC-chH--HHHHHHHHHHCCCEEEEEeCc
Confidence 3566666443 333 578999999999999988654
No 411
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=30.44 E-value=1.2e+02 Score=24.67 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
++....++..|......++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56677788899999999999999999999998765444333
No 412
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.43 E-value=1e+02 Score=29.49 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=35.8
Q ss_pred cceEEecCChhhHHHHHH------cCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 386 IACFLSHCGWNSTMEGVS------NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 386 v~~~ItHgG~gs~~Eal~------~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
++++|+-||-||+..++. .++|++.+-.. .+|.. ..++.+++.+++.+++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL------~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFY------TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceec------ccCCHHHHHHHHHHHHcC
Confidence 344999999999999986 47787654320 22222 225678888899888854
No 413
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.28 E-value=79 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=22.0
Q ss_pred CCccEEEECCCch-h-HHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIG-W-SMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~-~-~~~~A~~lgiP~i~~~ 135 (524)
.+||+||...... . ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 5999999865443 2 4455678999998875
No 414
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=30.26 E-value=1e+02 Score=30.01 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGME 70 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 70 (524)
..+|+++-++++||.. |.-|++.|.+|++-.-+...++..+.. .|+++..+.+...
T Consensus 18 gK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~-------dGf~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKE-------DGFKVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHh-------cCCEeecHHHHhh
Confidence 4689999999999976 667899999999998876655443332 4787777664433
No 415
>PRK08309 short chain dehydrogenase; Provisional
Probab=30.25 E-value=3.9e+02 Score=23.66 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 009851 21 LEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 21 l~LA~~L~~rGH~Vt~~~~~ 40 (524)
..+++.|+++|++|++++-.
T Consensus 13 g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHCcCEEEEEECC
Confidence 46999999999999998753
No 416
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.22 E-value=3.5e+02 Score=26.09 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEEEccc
Q 009851 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 92 ~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~~~~~ 137 (524)
.+..+++.+++ .+..+|+++.... .+-.+++..|++.+.+.+.
T Consensus 216 ~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l 260 (286)
T cd01019 216 RLAKIRKEIKE---KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPL 260 (286)
T ss_pred HHHHHHHHHHH---cCCcEEEecCCCChHHHHHHHHhcCceEEEeccc
Confidence 34555555555 7899999998766 6788999999987766543
No 417
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.15 E-value=3.1e+02 Score=25.50 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=24.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|.++++ |+.|.+ -..+|+.|+++|++|.++...
T Consensus 16 k~vlIt-Gas~gI--G~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTGL--GQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 555555 344444 478999999999999988765
No 418
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=30.14 E-value=2.2e+02 Score=30.69 Aligned_cols=28 Identities=7% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcceEEecCChh------hHHHHHHcCCceeccC
Q 009851 385 SIACFLSHCGWN------STMEGVSNGIPFLCWP 412 (524)
Q Consensus 385 ~v~~~ItHgG~g------s~~Eal~~GvP~v~~P 412 (524)
+.+++++|.|-| .+.||...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344489998865 6789999999999873
No 419
>PRK13604 luxD acyl transferase; Provisional
Probab=30.01 E-value=97 Score=30.35 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 38 (524)
.+.+++..+..++-.-+..+|+.|+++|..|.-+=
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 35677777877887779999999999999887653
No 420
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=30.01 E-value=1.4e+02 Score=25.37 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.2
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEE
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVV 345 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~ 345 (524)
..+|++++||.-....+.++++++.+. .+.++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~ 86 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVN 86 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEE
Confidence 459999999997778888888988884 356777654
No 421
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=29.99 E-value=1.1e+02 Score=25.85 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=32.3
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 8 VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 8 ~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
++..+..--++|..-++...++.|++|+++.+---...++
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~ 47 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALR 47 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhh
Confidence 5666777889999999999999999999998854444443
No 422
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=29.98 E-value=87 Score=28.80 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcCh-hhHHHhhhcCCCCCCCeEEE---ecCCCCCCCCCcccHHHHHHHHHHhc---
Q 009851 17 VIPLLEFSQCLAKHGFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLV---SIPDGMEPWEDRNDLGKLIEKCLQVM--- 89 (524)
Q Consensus 17 ~~p~l~LA~~L~~rGH~Vt~~~~~~~~-~~i~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--- 89 (524)
+.-...+...+++.|-.|.|+.+.... ..+...... .+..++ .++..+............+..+....
T Consensus 42 L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~-----~~~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~~~ 116 (211)
T PF00318_consen 42 LRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKR-----TGSFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFKLT 116 (211)
T ss_dssp HHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHH-----HTCEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH-----hCCCccCceecCcccCcHHHHHHHHHHHHHHHHhhhcc
Confidence 344556677778889999999987553 333322110 133343 23333333311111111222211111
Q ss_pred -------cHHHHHHHHHH---hcCCCCCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHH
Q 009851 90 -------PGKLEELIEEI---NSREDEKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAAS 141 (524)
Q Consensus 90 -------~~~~~~ll~~l---~~~~~~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~ 141 (524)
....+.+-+.+ ..-. ..||+|| .|+..- .+..=|..+|||.|.+.-+.+-+
T Consensus 117 kk~~~~~~~~~~kl~k~~~Gi~~l~-~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~~ 179 (211)
T PF00318_consen 117 KKENAKLKKKYQKLKKYFGGIKNLK-KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCNP 179 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTCS-SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-G
T ss_pred chhhhhhHHHHHHhhhhhHhhhccc-ccCcEEEEecccccchhHHHHHhcCceEEEeecCCCCc
Confidence 11122222222 1111 4589777 555443 67888999999999987665443
No 423
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=29.95 E-value=77 Score=30.73 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=25.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
||+++-.|..| ..+|..|++.||+|+++...
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 67787776665 56788999999999999873
No 424
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=29.73 E-value=3.4e+02 Score=24.02 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=47.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc----C-hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY----N-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~----~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (524)
.|.+.+..+.|-....+.+|-+-+-+|.+|.++---. . +..+.+.. +++++.....++...... ...
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-------~~~~~~~~g~~f~~~~~~-~~~ 76 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-------PNVEIERFGKGFVWRMNE-EEE 76 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-------T--EEEE--TT----GGG-HHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-------CeEEEEEcCCcccccCCC-cHH
Confidence 4667887888888877777666666777777765321 1 11111211 468888877654332111 111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch
Q 009851 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (524)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~ 118 (524)
+ ...++..++...+.+.+ ..+|+||.|....
T Consensus 77 ~-----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~~ 107 (172)
T PF02572_consen 77 D-----RAAAREGLEEAKEAISS---GEYDLVILDEINY 107 (172)
T ss_dssp H-----HHHHHHHHHHHHHHTT----TT-SEEEEETHHH
T ss_pred H-----HHHHHHHHHHHHHHHhC---CCCCEEEEcchHH
Confidence 1 23344445555555444 7899999998765
No 425
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=29.71 E-value=2.7e+02 Score=27.76 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCccEEE---ECCCchhHHHHHHHc-CCceEEEccchHHHH
Q 009851 106 EKIDCFI---ADGNIGWSMEIAKKM-NVRGAVFWPSSAASV 142 (524)
Q Consensus 106 ~~~D~vI---~D~~~~~~~~~A~~l-giP~i~~~~~~~~~~ 142 (524)
..+|..+ +|+....-..+++.| .||.|.+.+.++...
T Consensus 333 k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~pTt 373 (429)
T COG1029 333 KEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPTPTT 373 (429)
T ss_pred cCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCCcch
Confidence 6677443 677766555555555 599999988776543
No 426
>PLN00016 RNA-binding protein; Provisional
Probab=29.70 E-value=60 Score=32.80 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.+|+++..-+.|+-.--..|+++|+++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 46777622223333345678899999999999998654
No 427
>PRK10490 sensor protein KdpD; Provisional
Probab=29.67 E-value=2.3e+02 Score=32.61 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
+.||.+=..|+.|-.+-|+.-|++|.++|++|.+-.-.
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 46888888899999999999999999999999765543
No 428
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.66 E-value=80 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 18 IPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 18 ~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
.--+.+|..|++.|.+||++....
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccc
Confidence 456899999999999999998764
No 429
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.60 E-value=6.1e+02 Score=25.68 Aligned_cols=79 Identities=10% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCcceEEecCChhhHHHHHHcCCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcCHHHHHH
Q 009851 384 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKAR 463 (524)
Q Consensus 384 ~~v~~~ItHgG~gs~~Eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~~~~r~~ 463 (524)
-+|++++-.+--.....-+..-++-++--.+.-=+.++.+++. ..++..+|++-..+-++ .||+|
T Consensus 253 ERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva-------------~IL~~p~Lra~W~~El~--~Mr~R 317 (396)
T COG1448 253 ERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVA-------------TILNNPELRAEWEQELE--EMRQR 317 (396)
T ss_pred hccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHH-------------HHhCCHHHHHHHHHHHH--HHHHH
Confidence 5555555554444444444333333333333333333333332 11333444443333332 46666
Q ss_pred HHHHHHHHHhhhhc
Q 009851 464 ALELKEKAMSSVRE 477 (524)
Q Consensus 464 a~~l~~~~~~~~~~ 477 (524)
.++|+..+.++..+
T Consensus 318 i~~mR~~lv~~L~~ 331 (396)
T COG1448 318 ILEMRQALVDALKA 331 (396)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665444
No 430
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.55 E-value=3.2e+02 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=23.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
|.++++.++ | -=-..+|++|+++|++|.++..
T Consensus 9 k~~lItGas-~--gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCN-T--GLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeCCC-c--hHHHHHHHHHHHCCCEEEEecC
Confidence 566777544 3 3457889999999999988754
No 431
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.54 E-value=1.1e+02 Score=29.95 Aligned_cols=74 Identities=9% Similarity=0.075 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceEEecCChhhHHH
Q 009851 321 ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTME 400 (524)
Q Consensus 321 ~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ItHgG~gs~~E 400 (524)
..+.+..+.|.+|+.....+.||...++.+. ..+.++++...+-+||++ ||=..-..+++-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~-----------------~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDDS-----------------NELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccCH-----------------hhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 3456667779999999999999999876221 124444555555556655 666666666666
Q ss_pred HHH--cCCceeccCc
Q 009851 401 GVS--NGIPFLCWPY 413 (524)
Q Consensus 401 al~--~GvP~v~~P~ 413 (524)
+++ .|.+.+-=|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 663 2555544444
No 432
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=29.44 E-value=3.8e+02 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.052 Sum_probs=24.6
Q ss_pred CCccEEEECCCch---hHHHHHHHcCCceEEEcc
Q 009851 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 106 ~~~D~vI~D~~~~---~~~~~A~~lgiP~i~~~~ 136 (524)
.+||+|++-.... .+..+|.+||.|++.-..
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 6799999776544 478899999999987544
No 433
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=29.10 E-value=39 Score=30.67 Aligned_cols=36 Identities=6% Similarity=0.111 Sum_probs=26.9
Q ss_pred CCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHH
Q 009851 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAAS 141 (524)
Q Consensus 106 ~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~ 141 (524)
..||+|| .|+..- -+..-|.++|||.|.+.-+.+-+
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp 144 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPL 144 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCC
Confidence 4688666 676555 67888999999999987665543
No 434
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=29.09 E-value=65 Score=29.94 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 16 H~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
|...|...|++|.++||+|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788999999999999999998763
No 435
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=29.04 E-value=1.2e+02 Score=24.77 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999888776
No 436
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=28.69 E-value=2.4e+02 Score=32.45 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=22.5
Q ss_pred CCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
.+||++|.+.. ...+|+++|||++...
T Consensus 388 ~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 388 KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 79999999744 5678999999999655
No 437
>PRK06180 short chain dehydrogenase; Provisional
Probab=28.66 E-value=1e+02 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|...+.++++ |+.|.+ -..+++.|+++||+|.++...
T Consensus 1 ~~~~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 1 MSSMKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCCCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 4333445555 444544 678899999999999988754
No 438
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.61 E-value=4.2e+02 Score=28.66 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=78.4
Q ss_pred CceEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcce
Q 009851 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIAC 388 (524)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~ 388 (524)
++.|-|-+||.+ +...+++..+.|+..+..+-..+..- ...|+.+. .++-+..- ..++.
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sa------hr~~~~~~----------~~~~~~~~---~~~~v 468 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSA------HRTPERMF----------SYARSAHS---RGLQV 468 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECC------ccCHHHHH----------HHHHHHHH---CCCCE
Confidence 456777777644 56677788888888887765554332 23444322 11111111 12234
Q ss_pred EEecCChhhHHHHH---HcCCceeccCcccch--hhhH-Hhhcccc--ceeeE-EecCCCCCCCHHHHHHHHHHHhcCHH
Q 009851 389 FLSHCGWNSTMEGV---SNGIPFLCWPYFGDQ--FLNE-RYICDFW--KVGLK-FDRDEGGIITREEIKNKVDQVLGNQD 459 (524)
Q Consensus 389 ~ItHgG~gs~~Eal---~~GvP~v~~P~~~DQ--~~na-~rv~~~l--G~G~~-~~~~~~~~~t~~~l~~ai~~~l~~~~ 459 (524)
||.=.|.-.-.-++ ..-+|+|.+|.-..- -..+ .-+.+ + |+.+. +..+ ...++.-++..| --+.|++
T Consensus 469 ~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i~--~~~~aa~~a~~i-~~~~~~~ 544 (577)
T PLN02948 469 IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAIG--NATNAGLLAVRM-LGASDPD 544 (577)
T ss_pred EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEecC--ChHHHHHHHHHH-HhcCCHH
Confidence 77777754333333 235899999995321 1122 11222 3 54322 2221 234555555555 3345889
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 009851 460 FKARALELKEKAMSSVRE 477 (524)
Q Consensus 460 ~r~~a~~l~~~~~~~~~~ 477 (524)
++++.+..++.+++.+.+
T Consensus 545 ~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 545 LLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988875433
No 439
>PRK05854 short chain dehydrogenase; Provisional
Probab=28.56 E-value=3.2e+02 Score=26.57 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=24.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|.++++.++. - =-..+|++|+++|++|.++.-.
T Consensus 15 k~~lITGas~-G--IG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASD-G--LGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCC-h--HHHHHHHHHHHCCCEEEEEeCC
Confidence 5666775443 2 2478899999999999887653
No 440
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=28.54 E-value=63 Score=33.30 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
|++.||+++-.+..| +..|+.|...+++||++....+
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 456788888755444 4468888777899999987554
No 441
>PRK12744 short chain dehydrogenase; Provisional
Probab=28.50 E-value=2.6e+02 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
|.++++.++.| =-..+|+.|+++|++|.++..
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEec
Confidence 45666644443 456799999999999776653
No 442
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=28.37 E-value=1e+02 Score=29.84 Aligned_cols=37 Identities=32% Similarity=0.341 Sum_probs=27.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
||+|+-.|..| ..+|..|++.||+|+++..+...+.+
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~ 38 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKAL 38 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHH
Confidence 68888777665 46788999999999999873333333
No 443
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.37 E-value=70 Score=23.19 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
-+..|..|+++|++|+++-...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 4678999999999999997654
No 444
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=28.27 E-value=3e+02 Score=24.82 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccEEEECCCchhHHHHHHHcCCceEEEccc
Q 009851 108 IDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 108 ~D~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (524)
-+++++|-. ...+..|+..|++.|.+...
T Consensus 170 ~~~l~i~D~-~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 170 EECVFLDDL-GSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred HHeEEEcCC-HHHHHHHHHcCCEEEEECCH
Confidence 357777744 55888999999999987654
No 445
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=28.20 E-value=3e+02 Score=27.97 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=28.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCC-cChhhHHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG-FRVTFVNTD-YNHKRVVE 48 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rG-H~Vt~~~~~-~~~~~i~~ 48 (524)
++|+++-.|..|+ .+|.-|+++| ++|+++.-. .....+..
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~ 43 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE 43 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh
Confidence 5677777655554 5789999999 999999876 34444544
No 446
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.12 E-value=6.4e+02 Score=25.49 Aligned_cols=91 Identities=24% Similarity=0.258 Sum_probs=49.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHH----HhhhcCCCCCCCeEEEecCCCCCCCCCcccHH
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV----ESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (524)
+|+++. |+-...+.|++.|.+-|-+|..+........-. ..... .....+.
T Consensus 272 ~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~-----~~~~v~~--------------- 326 (398)
T PF00148_consen 272 KRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEE-----SDPEVII--------------- 326 (398)
T ss_dssp -EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHT-----TCSEEEE---------------
T ss_pred ceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhC-----CCcEEEe---------------
Confidence 456553 333666788999999998888887665432221 11100 0001000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEc
Q 009851 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (524)
..-...++++++. .+||+++.+.. ...+|+++++|++.+.
T Consensus 327 -------~~~~~~~~~~l~~------~~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 327 -------DPDPEEIEELLEE------LKPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp -------SCBHHHHHHHHHH------HT-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred -------CCCHHHHHHHHHh------cCCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 0011235556665 68999999944 7788999988888754
No 447
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.10 E-value=4.5e+02 Score=23.75 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=59.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe---CC-cC-hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN---TD-YN-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~---~~-~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (524)
|.+.+..+.|-....+.+|-+-+-+|.+|.++- +. .+ +....... ..++.++.+++++.-.... ...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~------~~~v~~~~~~~g~tw~~~~--~~~ 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF------GLGVEFHGMGEGFTWETQD--REA 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh------ccceeEEecCCceeCCCcC--cHH
Confidence 567888888888887777777777777776664 22 12 22222211 1368888888766533111 111
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEECCCch
Q 009851 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (524)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~D~vI~D~~~~ 118 (524)
+. ..+...+....+.+.+ .++|+||.|.+++
T Consensus 103 --d~--~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 103 --DI--AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred --HH--HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 11 3444555555555555 7999999998876
No 448
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=28.09 E-value=2.2e+02 Score=29.99 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC
Q 009851 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (524)
Q Consensus 17 ~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 66 (524)
-.-.+.||+.|.+.|.++ +++....+.+++. |+.+..+.
T Consensus 10 K~~iv~lAk~L~~lGfeI--iATgGTak~L~e~---------GI~v~~Vs 48 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVEL--LSTGGTAKLLAEA---------GVPVTEVS 48 (511)
T ss_pred cccHHHHHHHHHHCCCEE--EEechHHHHHHHC---------CCeEEEee
Confidence 445789999999999988 3666777777775 67666655
No 449
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=28.08 E-value=3.7e+02 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=23.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|.++++.++ |- =-..+|+.|+++|++|.++...
T Consensus 6 k~vlItGas-~g--IG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 6 KVALVTGAN-TG--LGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CEEEEECCC-ch--HHHHHHHHHHHCCCEEEEEcCc
Confidence 445555343 33 3678999999999999888753
No 450
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=28.06 E-value=3.7e+02 Score=26.35 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCCccEEEECCCch--hHHHHHHHcCCceEEEcc
Q 009851 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 92 ~~~~ll~~l~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~i~~~~ 136 (524)
.+.++++.+++ .+..+|+++.... .+-.+++..|++.+.+.+
T Consensus 240 ~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldp 283 (311)
T PRK09545 240 RLHEIRTQLVE---QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDP 283 (311)
T ss_pred HHHHHHHHHHH---cCCCEEEecCCCChHHHHHHHHhcCCeEEEecc
Confidence 45556666665 8899999999776 567899999999877543
No 451
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.03 E-value=41 Score=30.70 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=26.9
Q ss_pred CCccEEE-ECCCch-hHHHHHHHcCCceEEEccchHHH
Q 009851 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSAAS 141 (524)
Q Consensus 106 ~~~D~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~ 141 (524)
..||+|| .|+..- -+..=|.++|||.|.+.-+.+-+
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 4688766 676544 67888999999999987665543
No 452
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.78 E-value=2.9e+02 Score=24.81 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=38.7
Q ss_pred E-EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc---ChhhHHHhhhcCCCCCCCeEEEecCCC
Q 009851 5 R-VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY---NHKRVVESLQGKNYLGEQIHLVSIPDG 68 (524)
Q Consensus 5 ~-il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~---~~~~i~~~~~~~~~~~~~i~~~~~~~~ 68 (524)
| |+|+..++.-|---...+++.|++.|.+|.+++-.. +.+..+...... ....+-+++.+|.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~-~~~~~s~~~~~~~~ 175 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV-NGKDGSHLVSVPPG 175 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCCceEEEeCCC
Confidence 5 557777777777677788999999998888887653 333333222111 11234666776654
No 453
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.76 E-value=62 Score=28.44 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=29.3
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecC
Q 009851 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (524)
Q Consensus 12 ~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 66 (524)
|+.|++- ..|+++|.++||+|+.++-...+ .... .+++.+...
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~--~~~~--------~~~~~~~~d 47 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSPSK--AEDS--------PGVEIIQGD 47 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSGGG--HHHC--------TTEEEEESC
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCchh--cccc--------cccccceee
Confidence 4555553 46899999999999999976542 2221 477776644
No 454
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=27.73 E-value=94 Score=30.84 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCc-cC---HHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 1 MSRPRVLVMPAPAQ-GH---VIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 1 m~~~~il~~~~~~~-GH---~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
|.+.||+++..|.. =| +.....++++|.+.||+|..+-....
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~ 46 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKD 46 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCC
Confidence 77889998874432 23 35567899999999999998875543
No 455
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=27.62 E-value=1e+02 Score=29.98 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCC-CccCHH---HHHHHHHHHHhCCCEEEEEeCCc
Q 009851 1 MSRPRVLVMPAP-AQGHVI---PLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 1 m~~~~il~~~~~-~~GH~~---p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
|.+.||++++.+ +.=|-. ....+.++|.++||+|.++....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 445689877744 223444 66889999999999999986553
No 456
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.56 E-value=1.6e+02 Score=23.09 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|++.||++++..+.|--.-.-.+=+.+.++|.++.+-..+
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 5678999888776653333355566667788887765554
No 457
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=27.55 E-value=1.3e+02 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.008 Sum_probs=23.2
Q ss_pred CCccEEEECC-C-chhHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADG-N-IGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~-~-~~~~~~~A~~lgiP~i~~~ 135 (524)
.++|+|+.=. - .+.+..+|..+|+|++.+.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 6789998432 2 3478889999999999865
No 458
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.33 E-value=4.3e+02 Score=23.21 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcC-hhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHH
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDYN-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIE 98 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (524)
+..|.+...++|.+|.++....- .+.+.+... ...+++++....++.- .....+++++
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~---~~yP~l~ivg~~~g~f------------------~~~~~~~i~~ 95 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR---RRYPGLRIVGYHHGYF------------------DEEEEEAIIN 95 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---HHCCCeEEEEecCCCC------------------ChhhHHHHHH
Confidence 44555666668899999988643 222221111 1225777766544322 1123455666
Q ss_pred HHhcCCCCCccEEEECCCch----hHHHHHHHcCCceEEEccchHHHH
Q 009851 99 EINSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFWPSSAASV 142 (524)
Q Consensus 99 ~l~~~~~~~~D~vI~D~~~~----~~~~~A~~lgiP~i~~~~~~~~~~ 142 (524)
.+.+ .+||+|++-.-.+ |.....+.++.+ +.+....+..+
T Consensus 96 ~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d~ 139 (172)
T PF03808_consen 96 RINA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFDF 139 (172)
T ss_pred HHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhhh
Confidence 6665 7899999987776 566677777777 55555555443
No 459
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=27.29 E-value=85 Score=30.39 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=27.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
.||.|+-.|.+| ..+|+.|.++||+|++..-...
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChh
Confidence 367788777766 4789999999999999886543
No 460
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=27.14 E-value=93 Score=28.30 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 009851 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (524)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 37 (524)
+.++|++.-++.. -..+|+.|.+.||+|++.
T Consensus 27 ~gk~v~I~G~G~v-----G~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 27 EGKTVAVQGLGKV-----GYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEE
Confidence 3467777776643 467899999999999954
No 461
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=26.89 E-value=3.5e+02 Score=25.64 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHH
Q 009851 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (524)
Q Consensus 20 ~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (524)
...||+.|...++.+++.+............ .. ..... ....+.+.+++++
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~-------~~---~~~~G-------------------~l~~e~l~~~l~e 64 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQI-------GP---VRVGG-------------------FLGAEGLAAFLRE 64 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhcc-------CC---eeecC-------------------cCCHHHHHHHHHH
Confidence 4689999999998888777655432221110 01 00000 1123456777777
Q ss_pred HhcCCCCCccEEEECCCchh-------HHHHHHHcCCceEEEc
Q 009851 100 INSREDEKIDCFIADGNIGW-------SMEIAKKMNVRGAVFW 135 (524)
Q Consensus 100 l~~~~~~~~D~vI~D~~~~~-------~~~~A~~lgiP~i~~~ 135 (524)
.+.|++| |..-|. +..+|+..|||++.+-
T Consensus 65 ------~~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 65 ------EGIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred ------cCCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 7888877 333232 5678999999999964
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=26.88 E-value=2.2e+02 Score=26.34 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhH
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i 46 (524)
+++.-.++.|...-...++.+.+++|..|.+++.......+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 44666778899999999988888899999999997665443
No 463
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=26.83 E-value=1.8e+02 Score=26.29 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=45.9
Q ss_pred hCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCc
Q 009851 29 KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKI 108 (524)
Q Consensus 29 ~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (524)
..|.++++.+....++.+.+. .|+++...+..+.+.....+.....+.......+...++++++.+.....+
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~--------~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE--------MGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH--------cCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 468899999888777776655 377777777666544222222223334444455566777887775432336
Q ss_pred cEEEE
Q 009851 109 DCFIA 113 (524)
Q Consensus 109 D~vI~ 113 (524)
|++|+
T Consensus 79 ~~vi~ 83 (209)
T KOG1509|consen 79 DVVIS 83 (209)
T ss_pred ccccc
Confidence 65553
No 464
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=26.83 E-value=89 Score=26.54 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCEEEEEeCCcChhhHHHh
Q 009851 21 LEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (524)
Q Consensus 21 l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 49 (524)
.-+|-.|+++||+|++++.....+.+.+.
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 34788999999999999998744445554
No 465
>PRK06128 oxidoreductase; Provisional
Probab=26.81 E-value=2.9e+02 Score=26.65 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=22.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|.++++.++ |-+ -..+|+.|+++|++|.+....
T Consensus 56 k~vlITGas-~gI--G~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 56 RKALITGAD-SGI--GRATAIAFAREGADIALNYLP 88 (300)
T ss_pred CEEEEecCC-CcH--HHHHHHHHHHcCCEEEEEeCC
Confidence 455666433 323 368999999999999876543
No 466
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=26.78 E-value=59 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcChhhHH
Q 009851 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (524)
Q Consensus 17 ~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~ 47 (524)
+.|++.+.-.+.-|||.++++.+..+.+.+.
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 5788888889999999999999988876653
No 467
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=26.60 E-value=4.5e+02 Score=28.34 Aligned_cols=35 Identities=9% Similarity=-0.031 Sum_probs=29.2
Q ss_pred CCccEEE----ECCCchhHHHHHHHc-CCceEEEccchHH
Q 009851 106 EKIDCFI----ADGNIGWSMEIAKKM-NVRGAVFWPSSAA 140 (524)
Q Consensus 106 ~~~D~vI----~D~~~~~~~~~A~~l-giP~i~~~~~~~~ 140 (524)
..+|.+| ||-..+..+..|-++ ++|.|.+...+..
T Consensus 142 ~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGpM~ 181 (601)
T TIGR01196 142 NMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGPMV 181 (601)
T ss_pred CCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCcC
Confidence 7889776 898889888889999 8999998876654
No 468
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=26.46 E-value=4.3e+02 Score=22.92 Aligned_cols=138 Identities=18% Similarity=0.235 Sum_probs=77.4
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHhcCCCCEEEE-EcCCCCCCCCCCCChhhHHhhcCCeeEEeccChhhhhcCCCcceE
Q 009851 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWV-VRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACF 389 (524)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~l~~al~~~~~~~iw~-~~~~~~~~~~~~l~~~~~~~~~~n~~v~~~vpq~~lL~~~~v~~~ 389 (524)
.|-|-+||.+ +-+.++..++.|+..++.+-.. ++-+ .-|+.+.+ |+-. -....++.+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH-------RTPe~m~~----------ya~~---a~~~g~~vi 61 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH-------RTPEKMFE----------YAEE---AEERGVKVI 61 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc-------CCHHHHHH----------HHHH---HHHCCCeEE
Confidence 4566688754 6677888888898888876533 3332 22333221 1111 112334446
Q ss_pred EecCChh---hHHHHHHcCCceeccCccc------chhhhHHhhccccceeeEEe---cCCCCCCCHHHHHHHHHHHhcC
Q 009851 390 LSHCGWN---STMEGVSNGIPFLCWPYFG------DQFLNERYICDFWKVGLKFD---RDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 390 ItHgG~g---s~~Eal~~GvP~v~~P~~~------DQ~~na~rv~~~lG~G~~~~---~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
|.-.|.- -=+=|...=+|+|.+|.-. |-.+-.-++ --|+-+. .+ +.-++.-+...|- .+.|
T Consensus 62 IAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQM----P~GvPVaTvaIg--~a~NAallAa~IL-a~~d 134 (162)
T COG0041 62 IAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQM----PAGVPVATVAIG--NAANAALLAAQIL-AIKD 134 (162)
T ss_pred EecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcC----CCCCeeEEEeec--chhhHHHHHHHHH-cCCC
Confidence 6554421 1122344478999999873 333333333 4443222 22 2245555555553 3469
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 009851 458 QDFKARALELKEKAMSSVRE 477 (524)
Q Consensus 458 ~~~r~~a~~l~~~~~~~~~~ 477 (524)
+.++++.+++++..++.+.+
T Consensus 135 ~~l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 135 PELAEKLAEFREAQTEEVLE 154 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999886433
No 469
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=26.38 E-value=1.1e+02 Score=29.21 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=30.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
+|.+..=|+-|-..-.+.||..|+++|++|.++=.+.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4677766778999999999999999999999885443
No 470
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=26.36 E-value=4.6e+02 Score=23.23 Aligned_cols=96 Identities=15% Similarity=0.217 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHH
Q 009851 21 LEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEI 100 (524)
Q Consensus 21 l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 100 (524)
..+.+.|.++|+.+.++|..... .+....... ....-+..+-..+..... +--...+...++.+
T Consensus 98 ~~~L~~L~~~g~~~~i~Sn~~~~-~~~~~l~~~-gl~~~fd~i~~s~~~~~~--------------KP~~~~~~~~~~~~ 161 (198)
T TIGR01428 98 PAGLRALKERGYRLAILSNGSPA-MLKSLVKHA-GLDDPFDAVLSADAVRAY--------------KPAPQVYQLALEAL 161 (198)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHH-HHHHHHHHC-CChhhhheeEehhhcCCC--------------CCCHHHHHHHHHHh
Confidence 45567888899999999875432 222211100 000112222222211110 01122344444444
Q ss_pred hcCCCCCccEEEECCCchhHHHHHHHcCCceEEEcc
Q 009851 101 NSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 101 ~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (524)
.- ..-++++++-.. .-...|+..|+++|.+..
T Consensus 162 ~~---~p~~~~~vgD~~-~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 162 GV---PPDEVLFVASNP-WDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred CC---ChhhEEEEeCCH-HHHHHHHHCCCcEEEecC
Confidence 32 223455444343 578889999999998754
No 471
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=26.20 E-value=4.4e+02 Score=27.31 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.+||+++-.++..| .|++.|.+.|++|.++...
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~ 34 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIGH 34 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 45899988777666 5788888889887777543
No 472
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=26.06 E-value=1.2e+02 Score=29.52 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=33.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 42 (524)
||+|.-=|+.|-..-.+.||..|+++|++|.++=.+..
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 48888888999999999999999999999998876554
No 473
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=26.00 E-value=3.6e+02 Score=21.91 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=54.3
Q ss_pred CccCHHHHHHHHHHHHhC--CCEEEEEeCCcChhhHHH-hhhcCCCCCCCeEEEecCCCCCCCCCcccHHHHHHHHHHhc
Q 009851 13 AQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVE-SLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVM 89 (524)
Q Consensus 13 ~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~i~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (524)
..++-.-++.+|+.|.+- |+++. .+....+.+++ . |+....+ ..-+.+ .
T Consensus 7 ~d~dK~~~~~~a~~~~~ll~Gf~i~--AT~gTa~~L~~~~---------Gi~v~~v-k~~~~~----------------g 58 (115)
T cd01422 7 HDNKKEDLVEFVKQHQELLSRHRLV--ATGTTGLLIQEAT---------GLTVNRM-KSGPLG----------------G 58 (115)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEE--EechHHHHHHHhh---------CCcEEEE-ecCCCC----------------c
Confidence 345667788999999999 99983 45566666665 4 5665555 211111 1
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEECCC--ch--------hHHHHHHHcCCceEEE
Q 009851 90 PGKLEELIEEINSREDEKIDCFIADGN--IG--------WSMEIAKKMNVRGAVF 134 (524)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~D~vI~D~~--~~--------~~~~~A~~lgiP~i~~ 134 (524)
.+.+-+++.. .++|+||.-+. .. .-...|-..+||++..
T Consensus 59 ~~~i~~~i~~------g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 59 DQQIGALIAE------GEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred hhHHHHHHHc------CceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 1234445544 78999985543 11 2234588889999874
No 474
>PRK09739 hypothetical protein; Provisional
Probab=25.96 E-value=1.6e+02 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCCCEEEEEc-CCCc-cCHH-HHHHHHHHHHhCCCEEEEEeC
Q 009851 1 MSRPRVLVMP-APAQ-GHVI-PLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 1 m~~~~il~~~-~~~~-GH~~-p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
|+++||+++. .|-. |.-. -.-.+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 7778888664 3432 2222 233456677778999997653
No 475
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.92 E-value=3.6e+02 Score=25.34 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEeCCcC--hhhHHHhhhcCCCCCCCeEEEecCC-CCCCCCCcccHHHHHHHHHHhccHH
Q 009851 17 VIPLLEFSQCLAKHG-FRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLIEKCLQVMPGK 92 (524)
Q Consensus 17 ~~p~l~LA~~L~~rG-H~Vt~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (524)
+.|..++.++|.+-| .+|.++++-.. .+.+.+.. ...||+...+.. +..... .+-+.-...
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l-----~~~G~eV~~~~~~~~~~~~----------~ia~i~p~~ 169 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYF-----AVRGFEIVNFTCLGLTDDR----------EMARISPDC 169 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHH-----HhCCcEEeeeeccCCCCCc----------eeeecCHHH
Confidence 367778888888888 56777776321 12222221 113777766532 121110 011122333
Q ss_pred HHHHHHHHhcCCCCCccEEEECCCchhHHHH----HHHcCCceEEEccchHH
Q 009851 93 LEELIEEINSREDEKIDCFIADGNIGWSMEI----AKKMNVRGAVFWPSSAA 140 (524)
Q Consensus 93 ~~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~----A~~lgiP~i~~~~~~~~ 140 (524)
+.+.+.++.. ..+|.|+.--....++.+ =+.+|+|++..+....+
T Consensus 170 i~~~~~~~~~---~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W 218 (239)
T TIGR02990 170 IVEAALAAFD---PDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAW 218 (239)
T ss_pred HHHHHHHhcC---CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHH
Confidence 4444444433 567887755444434333 35679999875544433
No 476
>PRK05693 short chain dehydrogenase; Provisional
Probab=25.84 E-value=3.5e+02 Score=25.54 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=22.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
|.++++.+ .|-+ -..+++.|+++|++|+.+.-.
T Consensus 2 k~vlItGa-sggi--G~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITGC-SSGI--GRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CEEEEecC-CChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 34555543 3333 357899999999999887643
No 477
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=25.79 E-value=82 Score=27.44 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=23.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
+||.|+-.|..| ..+|+.|+++||+|++.-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 577888777665 5789999999999998753
No 478
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.69 E-value=1.3e+02 Score=30.69 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 009851 19 PLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 19 p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
--..+|++|+++|++|+++..+.
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCc
Confidence 35789999999999999987654
No 479
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=25.57 E-value=2.1e+02 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcCh
Q 009851 19 PLLEFSQCLAKHGFRVTFVNTDYNH 43 (524)
Q Consensus 19 p~l~LA~~L~~rGH~Vt~~~~~~~~ 43 (524)
..+...++|.+.||.|+++|.....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5566677778999999999987543
No 480
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=25.45 E-value=1e+02 Score=30.66 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCc-cC---HHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 1 MSRPRVLVMPAPAQ-GH---VIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 1 m~~~~il~~~~~~~-GH---~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
|++.||+++..|-. =| +.....++++|.+.||+|..+-...
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECC
Confidence 77889998875532 23 4556688899999999999876544
No 481
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=25.36 E-value=7.8e+02 Score=25.53 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=27.9
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
+|++.... +.|-..-.+.|++.|.++|.+|..+-..
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~G 39 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAG 39 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeC
Confidence 45555544 4489999999999999999998766543
No 482
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=25.23 E-value=1.1e+02 Score=29.05 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=31.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
.|.|..=|+.|...-...||..|+++|++|.++=.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 467777778899999999999999999999888554
No 483
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=25.02 E-value=6e+02 Score=25.15 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=37.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChhhHHHhhhcCCCCCCCeEEEecCCCCC
Q 009851 7 LVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGME 70 (524)
Q Consensus 7 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 70 (524)
+++...-.|...-++..++.+.++|..|..+|.... +.+.. ...+..++.+|.+..
T Consensus 81 lvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~---L~~~a-----~~~~~~~i~ip~~~~ 136 (337)
T PRK08674 81 LVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGK---LKEMA-----KEHGLPVIIVPGGYQ 136 (337)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCch---HHHHH-----HhcCCeEEEeCCCCc
Confidence 333344568888899999999999999888886432 22221 012677788876553
No 484
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=24.96 E-value=3.2e+02 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.0
Q ss_pred hhcCCCcceEEecCChhh---HHHHHHcCCceec
Q 009851 380 VLNHPSIACFLSHCGWNS---TMEGVSNGIPFLC 410 (524)
Q Consensus 380 lL~~~~v~~~ItHgG~gs---~~Eal~~GvP~v~ 410 (524)
++.+-+-+.+|++||.=| +..|...|+|+++
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEE
Confidence 344433344999999986 8999999999976
No 485
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.95 E-value=1.4e+02 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEECCC-chhHHHHHHHcCCceEEEc
Q 009851 89 MPGKLEELIEEINSREDEKIDCFIADGN-IGWSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~D~vI~D~~-~~~~~~~A~~lgiP~i~~~ 135 (524)
..+.++++++++++ ...-++|+... -.-...+++.+|||+|.-.
T Consensus 47 ~tpe~~~W~~e~k~---~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A 91 (175)
T COG2179 47 ATPELRAWLAELKE---AGIKVVVVSNNKESRVARAAEKLGVPFIYRA 91 (175)
T ss_pred CCHHHHHHHHHHHh---cCCEEEEEeCCCHHHHHhhhhhcCCceeecc
Confidence 45678899999887 55666665544 3367888999999998843
No 486
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.88 E-value=1.2e+02 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
..+++++++|+. +...+..++.|.+.|.+++++...
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 457888888866 466799999999999998887653
No 487
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.84 E-value=1.2e+02 Score=29.33 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=35.2
Q ss_pred CcceEEecCChhhHHHHHHc---CCceeccCcccchhhhHHhhccccceeeEEecCCCCCCCHHHHHHHHHHHhcC
Q 009851 385 SIACFLSHCGWNSTMEGVSN---GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (524)
Q Consensus 385 ~v~~~ItHgG~gs~~Eal~~---GvP~v~~P~~~DQ~~na~rv~~~lG~G~~~~~~~~~~~t~~~l~~ai~~~l~~ 457 (524)
.+.++|.-||-||+.+++.. ++|++.+|... +|. . ..++.+++.+++.+++++
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------lGF--l------~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------LGF--L------TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------CCc--c------ccCCHHHHHHHHHHHHcC
Confidence 34559999999999999853 45666655421 111 1 235678888888888854
No 488
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=24.82 E-value=6e+02 Score=24.80 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 009851 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (524)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 40 (524)
+||+|+..+ ...+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~-----~~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTP-----EFAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCcEEEEECC
Confidence 377877533 24567788888889998866653
No 489
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.63 E-value=1.6e+02 Score=22.06 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=27.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 009851 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (524)
Q Consensus 6 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 38 (524)
+++...++.|-..-...||+.|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455566677888999999999999999998876
No 490
>PRK07985 oxidoreductase; Provisional
Probab=24.51 E-value=3.3e+02 Score=26.19 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=22.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 5 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
|.++++.++ |- --..+|+.|+++|++|.+...
T Consensus 50 k~vlITGas-~g--IG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 50 RKALVTGGD-SG--IGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred CEEEEECCC-Cc--HHHHHHHHHHHCCCEEEEecC
Confidence 456666443 32 347899999999999987653
No 491
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.40 E-value=92 Score=31.15 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCccCHHHHHHHHHHHHh-CCCEEEEEeCCc
Q 009851 12 PAQGHVIPLLEFSQCLAK-HGFRVTFVNTDY 41 (524)
Q Consensus 12 ~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~ 41 (524)
-=+|++--+.+||+.|++ +||+|++.+.+.
T Consensus 9 DNyGDIGV~WRLArqLa~e~g~~VrLwvDdl 39 (371)
T TIGR03837 9 DNYGDIGVCWRLARQLAAEHGHQVRLWVDDL 39 (371)
T ss_pred cCCcchHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 357999999999999997 699999999864
No 492
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.40 E-value=7.8e+02 Score=25.20 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcChh
Q 009851 4 PRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (524)
Q Consensus 4 ~~il-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 44 (524)
.+++ |+-..+.|-..-...||..+..+|++|.+++.+.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 3455 5555577999999999999999999999999987643
No 493
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.38 E-value=1.4e+02 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=29.6
Q ss_pred eEEecCChhhHHHHHHcCCceeccCccc--chhhhHHhhccccceeeEEec
Q 009851 388 CFLSHCGWNSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDR 436 (524)
Q Consensus 388 ~~ItHgG~gs~~Eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~~~~ 436 (524)
+..|.||..-+.|-=.+|+|+|.+-... -.-.-|.|++. ++++.-..
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~Pl 395 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHPL 395 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCCC
Confidence 3466677767777778999998765432 22334677775 66655443
No 494
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.37 E-value=1.4e+02 Score=30.52 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCccEEEECCCchh----------HHHHHHHcCCceEEEc
Q 009851 93 LEELIEEINSREDEKIDCFIADGNIGW----------SMEIAKKMNVRGAVFW 135 (524)
Q Consensus 93 ~~~ll~~l~~~~~~~~D~vI~D~~~~~----------~~~~A~~lgiP~i~~~ 135 (524)
.+.+++-+++ .+||++|+.+.+.. +..+.+++|||.+.-.
T Consensus 65 ~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 65 KAKVLEMIKG---ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3445555554 89999999986543 1235678999998754
No 495
>PRK06484 short chain dehydrogenase; Validated
Probab=24.34 E-value=4.2e+02 Score=27.88 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 009851 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (524)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 39 (524)
+.|+++++.++.| =-..+|+.|+++|++|.++.-
T Consensus 4 ~~k~~lITGas~g---IG~aia~~l~~~G~~V~~~~r 37 (520)
T PRK06484 4 QSRVVLVTGAAGG---IGRAACQRFARAGDQVVVADR 37 (520)
T ss_pred CCeEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 3477788866554 456799999999999988754
No 496
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=24.33 E-value=5.8e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=20.4
Q ss_pred CCccEEEECCCch----hHHHHHHHcCCceEEEc
Q 009851 106 EKIDCFIADGNIG----WSMEIAKKMNVRGAVFW 135 (524)
Q Consensus 106 ~~~D~vI~D~~~~----~~~~~A~~lgiP~i~~~ 135 (524)
.++|.||..+... ..+..+...|||+|.+.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 56 KGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred hCCCEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 5789888765432 23455567899999865
No 497
>PTZ00445 p36-lilke protein; Provisional
Probab=24.29 E-value=5.7e+02 Score=23.61 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=58.2
Q ss_pred cCHHH-HHHHHHHHHhCCCEEEEEeCCcChh--------------hHHHhhhcCCCCCCCeEEEecCCCCCCCCCcccHH
Q 009851 15 GHVIP-LLEFSQCLAKHGFRVTFVNTDYNHK--------------RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (524)
Q Consensus 15 GH~~p-~l~LA~~L~~rGH~Vt~~~~~~~~~--------------~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (524)
+|+.| +..++++|.+.|..|+++|...... .++...... ...+....+=...|.. .....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s---~~~~~i~~~~~yyp~~--w~~p~ 148 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS---KCDFKIKKVYAYYPKF--WQEPS 148 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc---CccceeeeeeeeCCcc--cCChh
Confidence 45666 7889999999999999999765433 333332110 0111111111111111 01111
Q ss_pred HHHHHHHHh-ccHH--H--HHHHHHHhcCCCCCccEEEECCCchhHHHHHHHcCCceEEEcc
Q 009851 80 KLIEKCLQV-MPGK--L--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (524)
Q Consensus 80 ~~~~~~~~~-~~~~--~--~~ll~~l~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (524)
.+...-... .... + +.++++..- ..-++++.|-. ..-...|+++|+-.+.+..
T Consensus 149 ~y~~~gl~KPdp~iK~yHle~ll~~~gl---~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 149 DYRPLGLDAPMPLDKSYHLKQVCSDFNV---NPDEILFIDDD-MNNCKNALKEGYIALHVTG 206 (219)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHcCC---CHHHeEeecCC-HHHHHHHHHCCCEEEEcCC
Confidence 111111111 1111 2 555555321 23368888865 5578889999999988754
No 498
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=24.08 E-value=1.1e+02 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCc--c-CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 009851 3 RPRVLVMPAPAQ--G-HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (524)
Q Consensus 3 ~~~il~~~~~~~--G-H~~p~l~LA~~L~~rGH~Vt~~~~~~ 41 (524)
..||+++|.-+. . --+...+|++.|.++|.+|.|..+|-
T Consensus 307 A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 348 (463)
T PF02233_consen 307 AKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPV 348 (463)
T ss_dssp -SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred cCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 468888883221 1 24688899999999999999999975
No 499
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=24.04 E-value=80 Score=30.24 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=14.9
Q ss_pred hHHHHHHHcCCceEEEccc
Q 009851 119 WSMEIAKKMNVRGAVFWPS 137 (524)
Q Consensus 119 ~~~~~A~~lgiP~i~~~~~ 137 (524)
-+..+|+.+|||++++.|.
T Consensus 113 iA~~ia~~~gvPayIVDPv 131 (358)
T COG3426 113 IANRIAKALGVPAYIVDPV 131 (358)
T ss_pred HHHHHhhhcCCCeeeeCce
Confidence 4567788899999998765
No 500
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=24.02 E-value=7.2e+02 Score=25.05 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCC-CEEEEEeCCc
Q 009851 20 LLEFSQCLAKHG-FRVTFVNTDY 41 (524)
Q Consensus 20 ~l~LA~~L~~rG-H~Vt~~~~~~ 41 (524)
.-.|.++|.+.| .+|.+++...
T Consensus 16 l~~l~~~l~~~g~~~~lvv~~~~ 38 (377)
T cd08176 16 IKEIGDELKNLGFKKALIVTDKG 38 (377)
T ss_pred HHHHHHHHHHhCCCeEEEECCch
Confidence 456788888888 5677776653
Done!