Query 009854
Match_columns 524
No_of_seqs 234 out of 1656
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 3E-106 7E-111 849.5 59.2 522 2-524 13-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 7E-102 2E-106 808.0 54.5 504 2-524 37-554 (596)
3 PLN02792 oxidoreductase 100.0 8E-102 2E-106 805.4 54.2 487 2-524 26-523 (536)
4 PLN02991 oxidoreductase 100.0 3E-101 7E-106 799.2 54.5 483 2-524 38-530 (543)
5 PLN02835 oxidoreductase 100.0 2E-100 5E-105 797.6 54.4 483 3-524 40-531 (539)
6 PLN02168 copper ion binding / 100.0 1.9E-99 4E-104 787.6 54.0 486 2-524 36-541 (545)
7 PLN02354 copper ion binding / 100.0 1.4E-99 3E-104 792.5 53.0 491 2-524 37-538 (552)
8 KOG1263 Multicopper oxidases [ 100.0 2E-98 4E-103 773.0 53.7 510 2-524 38-555 (563)
9 TIGR03388 ascorbase L-ascorbat 100.0 3E-94 6.5E-99 758.1 54.7 499 2-524 11-538 (541)
10 PLN02191 L-ascorbate oxidase 100.0 7.8E-94 1.7E-98 754.7 54.7 498 2-524 33-561 (574)
11 PLN02604 oxidoreductase 100.0 1E-92 2.2E-97 748.3 56.1 500 2-524 34-561 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.2E-91 2.5E-96 736.0 51.8 482 2-508 18-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 5.1E-76 1.1E-80 616.2 46.5 411 3-505 56-587 (587)
14 PRK10965 multicopper oxidase; 100.0 2.5E-75 5.4E-80 607.1 43.3 408 8-505 62-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 5.8E-74 1.3E-78 592.1 40.8 389 8-506 62-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.4E-59 3E-64 488.3 38.8 399 7-506 48-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 4.3E-46 9.3E-51 365.1 21.0 247 6-278 42-300 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 3.4E-35 7.5E-40 245.6 8.9 111 3-113 6-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 5.8E-30 1.3E-34 223.6 11.5 107 396-506 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 6.3E-27 1.4E-31 208.6 14.3 150 124-276 1-159 (159)
21 TIGR02376 Cu_nitrite_red nitri 99.7 8.7E-16 1.9E-20 151.1 25.2 248 156-508 48-299 (311)
22 TIGR01480 copper_res_A copper- 99.7 1.2E-16 2.6E-21 168.7 18.8 226 14-253 249-572 (587)
23 TIGR03095 rusti_cyanin rusticy 99.7 4.5E-17 9.7E-22 141.4 11.6 101 8-110 38-148 (148)
24 PRK10965 multicopper oxidase; 99.6 5E-14 1.1E-18 147.8 18.4 237 8-256 209-511 (523)
25 PRK10883 FtsI repressor; Provi 99.5 3.8E-13 8.2E-18 139.9 19.6 224 8-258 206-458 (471)
26 TIGR03389 laccase laccase, pla 99.5 1.8E-12 3.9E-17 137.7 22.4 240 12-253 167-505 (539)
27 PLN02835 oxidoreductase 99.5 9.2E-13 2E-17 138.8 19.6 240 11-254 191-498 (539)
28 COG2132 SufI Putative multicop 99.3 1.5E-11 3.2E-16 128.6 15.2 234 7-255 185-436 (451)
29 TIGR03388 ascorbase L-ascorbat 99.3 2.1E-10 4.5E-15 122.0 19.7 228 24-253 204-509 (541)
30 PLN02168 copper ion binding / 99.3 2E-10 4.4E-15 120.9 19.0 240 11-253 188-501 (545)
31 PLN02354 copper ion binding / 99.3 1.2E-10 2.6E-15 123.1 16.5 239 12-253 190-504 (552)
32 PLN02991 oxidoreductase 99.3 6.5E-10 1.4E-14 116.9 21.7 241 10-253 189-496 (543)
33 TIGR03390 ascorbOXfungal L-asc 99.3 1.6E-10 3.4E-15 122.6 17.2 240 12-253 172-517 (538)
34 PLN02604 oxidoreductase 99.2 2.2E-10 4.9E-15 122.1 17.6 227 23-253 224-532 (566)
35 PLN02792 oxidoreductase 99.2 1.9E-09 4.2E-14 113.5 23.0 241 10-253 178-489 (536)
36 PLN02191 L-ascorbate oxidase 99.1 5.4E-09 1.2E-13 111.4 17.7 234 16-253 219-532 (574)
37 PF07731 Cu-oxidase_2: Multico 99.1 1.5E-09 3.2E-14 94.5 11.0 79 174-254 32-121 (138)
38 TIGR03096 nitroso_cyanin nitro 99.0 9.9E-10 2.2E-14 92.1 7.3 80 7-100 44-124 (135)
39 PLN00044 multi-copper oxidase- 98.8 1.3E-06 2.8E-11 92.9 23.0 239 156-485 49-291 (596)
40 PF07732 Cu-oxidase_3: Multico 98.8 3E-08 6.5E-13 83.1 8.5 90 400-507 26-116 (117)
41 KOG1263 Multicopper oxidases [ 98.2 0.00011 2.5E-09 77.4 20.2 235 156-489 48-286 (563)
42 TIGR02656 cyanin_plasto plasto 98.2 7.2E-06 1.6E-10 66.6 7.6 82 22-110 16-99 (99)
43 TIGR02657 amicyanin amicyanin. 98.1 1.3E-05 2.7E-10 62.8 7.9 74 22-110 10-83 (83)
44 TIGR03095 rusti_cyanin rusticy 98.1 1.6E-05 3.5E-10 69.3 8.7 92 400-505 52-148 (148)
45 PF00394 Cu-oxidase: Multicopp 98.0 1.8E-05 4E-10 70.4 8.3 94 399-506 59-157 (159)
46 PF13473 Cupredoxin_1: Cupredo 98.0 1E-05 2.2E-10 66.4 4.9 78 15-109 27-104 (104)
47 PRK02710 plastocyanin; Provisi 97.9 3.9E-05 8.5E-10 64.5 8.0 76 20-110 44-119 (119)
48 PF00127 Copper-bind: Copper b 97.9 2.2E-05 4.7E-10 63.8 6.1 82 23-110 17-99 (99)
49 TIGR03094 sulfo_cyanin sulfocy 97.7 0.00028 6.1E-09 61.6 9.9 98 14-114 75-189 (195)
50 PRK02888 nitrous-oxide reducta 97.7 0.00012 2.5E-09 77.1 8.5 98 4-112 534-635 (635)
51 PF06525 SoxE: Sulfocyanin (So 97.7 0.00038 8.2E-09 62.2 10.4 103 12-115 74-191 (196)
52 TIGR02656 cyanin_plasto plasto 97.6 0.00027 6E-09 57.3 7.7 83 400-505 17-99 (99)
53 TIGR03096 nitroso_cyanin nitro 97.4 0.00088 1.9E-08 56.6 7.9 59 401-490 62-120 (135)
54 TIGR02375 pseudoazurin pseudoa 97.3 0.001 2.2E-08 55.2 7.9 76 22-113 14-90 (116)
55 COG3794 PetE Plastocyanin [Ene 97.3 0.0011 2.5E-08 55.5 7.6 75 23-111 54-128 (128)
56 TIGR03102 halo_cynanin halocya 97.1 0.0024 5.2E-08 52.9 7.7 76 20-110 39-115 (115)
57 PF00127 Copper-bind: Copper b 97.1 0.0028 6E-08 51.4 7.9 83 400-505 17-99 (99)
58 PRK02888 nitrous-oxide reducta 96.6 0.0083 1.8E-07 63.5 9.0 79 400-506 555-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.3 0.015 3.1E-07 47.6 6.9 63 400-493 35-97 (104)
60 PRK02710 plastocyanin; Provisi 96.1 0.028 6E-07 47.2 7.7 73 400-505 47-119 (119)
61 TIGR02375 pseudoazurin pseudoa 95.4 0.1 2.2E-06 43.4 8.1 36 468-507 54-89 (116)
62 COG4454 Uncharacterized copper 94.7 0.068 1.5E-06 45.9 5.4 74 176-253 63-142 (158)
63 COG4454 Uncharacterized copper 94.3 0.083 1.8E-06 45.4 5.0 45 461-505 113-157 (158)
64 TIGR02657 amicyanin amicyanin. 94.1 0.37 7.9E-06 37.5 8.1 73 400-505 11-83 (83)
65 TIGR02695 azurin azurin. Azuri 94.1 0.22 4.8E-06 41.4 7.0 86 22-108 15-124 (125)
66 TIGR03102 halo_cynanin halocya 93.5 0.6 1.3E-05 38.7 8.6 73 401-505 43-115 (115)
67 PF00116 COX2: Cytochrome C ox 93.0 1.4 3E-05 37.0 10.2 62 176-256 46-107 (120)
68 PF06525 SoxE: Sulfocyanin (So 92.5 1.9 4.2E-05 38.9 10.8 100 398-507 84-188 (196)
69 TIGR03094 sulfo_cyanin sulfocy 90.9 3.5 7.5E-05 36.6 10.4 100 398-507 83-187 (195)
70 PF00116 COX2: Cytochrome C ox 89.9 3.2 7E-05 34.8 9.3 74 399-504 45-119 (120)
71 PF12690 BsuPI: Intracellular 89.6 3.5 7.7E-05 31.9 8.6 66 185-251 3-82 (82)
72 COG3794 PetE Plastocyanin [Ene 86.6 3.7 8.1E-05 34.6 7.5 74 401-506 55-128 (128)
73 TIGR02866 CoxB cytochrome c ox 86.0 3 6.6E-05 38.5 7.4 77 400-508 117-194 (201)
74 COG1470 Predicted membrane pro 85.9 46 0.001 34.4 17.7 176 25-256 278-470 (513)
75 TIGR02695 azurin azurin. Azuri 85.1 5.3 0.00011 33.4 7.5 77 176-252 16-111 (125)
76 COG4263 NosZ Nitrous oxide red 79.5 4 8.7E-05 41.4 5.7 77 23-110 558-636 (637)
77 PRK10378 inactive ferrous ion 79.2 12 0.00025 38.0 9.0 84 14-113 34-119 (375)
78 PF12690 BsuPI: Intracellular 78.3 4.5 9.7E-05 31.3 4.6 58 24-92 17-80 (82)
79 TIGR02866 CoxB cytochrome c ox 78.0 4.6 0.0001 37.2 5.5 76 23-113 117-194 (201)
80 COG1622 CyoA Heme/copper-type 77.5 6.4 0.00014 37.4 6.3 77 23-114 137-215 (247)
81 PF01835 A2M_N: MG2 domain; I 69.2 15 0.00032 29.3 5.8 71 179-253 10-85 (99)
82 PF05506 DUF756: Domain of unk 63.0 45 0.00097 26.0 7.3 63 22-93 8-73 (89)
83 PF07705 CARDB: CARDB; InterP 60.3 80 0.0017 24.6 9.8 66 179-253 14-83 (101)
84 PF04151 PPC: Bacterial pre-pe 59.4 47 0.001 24.4 6.5 65 176-252 5-69 (70)
85 COG1622 CyoA Heme/copper-type 58.9 34 0.00074 32.6 7.0 78 400-509 137-215 (247)
86 MTH00047 COX2 cytochrome c oxi 57.3 44 0.00094 30.6 7.1 61 177-256 117-177 (194)
87 MTH00047 COX2 cytochrome c oxi 51.3 1.2E+02 0.0026 27.7 9.0 75 400-506 116-191 (194)
88 MTH00140 COX2 cytochrome c oxi 51.0 57 0.0012 30.7 7.1 77 399-507 139-216 (228)
89 MTH00140 COX2 cytochrome c oxi 50.1 57 0.0012 30.7 6.9 62 176-256 140-201 (228)
90 PF05938 Self-incomp_S1: Plant 49.1 48 0.001 27.0 5.6 70 34-112 2-71 (110)
91 PRK10378 inactive ferrous ion 48.1 1.2E+02 0.0025 30.9 9.1 62 176-253 44-105 (375)
92 PF04379 DUF525: Protein of un 46.1 35 0.00075 26.9 4.0 49 185-236 15-67 (90)
93 PRK05461 apaG CO2+/MG2+ efflux 44.9 56 0.0012 27.6 5.3 49 185-236 32-84 (127)
94 PF05506 DUF756: Domain of unk 44.8 1.5E+02 0.0032 23.0 9.9 58 184-252 20-77 (89)
95 PF07691 PA14: PA14 domain; I 44.1 1.6E+02 0.0035 24.8 8.5 61 178-243 54-121 (145)
96 COG1188 Ribosome-associated he 43.8 18 0.00039 29.0 2.0 35 13-47 35-69 (100)
97 PF14326 DUF4384: Domain of un 43.5 1.5E+02 0.0032 22.7 8.3 25 179-203 2-26 (83)
98 TIGR01433 CyoA cytochrome o ub 42.7 72 0.0015 30.0 6.3 62 176-256 139-200 (226)
99 PF14874 PapD-like: Flagellar- 40.7 1.8E+02 0.0039 22.9 8.1 64 179-249 15-82 (102)
100 MTH00008 COX2 cytochrome c oxi 39.8 1E+02 0.0022 29.1 6.8 61 176-255 140-200 (228)
101 PF11322 DUF3124: Protein of u 39.5 1E+02 0.0022 25.9 5.9 54 186-243 27-80 (125)
102 PTZ00047 cytochrome c oxidase 39.5 1.6E+02 0.0034 26.1 7.3 61 177-256 74-134 (162)
103 KOG4680 Uncharacterized conser 38.0 2.2E+02 0.0048 24.3 7.6 72 156-255 56-129 (153)
104 TIGR01432 QOXA cytochrome aa3 36.7 88 0.0019 29.2 5.9 62 176-256 130-191 (217)
105 PRK13202 ureB urease subunit b 36.6 96 0.0021 25.0 5.1 59 24-82 12-83 (104)
106 TIGR01433 CyoA cytochrome o ub 36.4 85 0.0018 29.5 5.7 76 400-507 139-215 (226)
107 PTZ00047 cytochrome c oxidase 35.8 2E+02 0.0044 25.4 7.5 75 400-506 73-148 (162)
108 PF14451 Ub-Mut7C: Mut7-C ubiq 35.5 30 0.00065 26.7 2.1 26 11-36 49-74 (81)
109 PF14524 Wzt_C: Wzt C-terminal 34.9 1.5E+02 0.0033 24.7 6.9 73 178-253 29-107 (142)
110 MTH00098 COX2 cytochrome c oxi 34.4 1.3E+02 0.0029 28.2 6.7 61 176-255 140-200 (227)
111 PF14392 zf-CCHC_4: Zinc knuck 33.9 53 0.0011 22.4 2.9 31 466-496 15-45 (49)
112 PF10633 NPCBM_assoc: NPCBM-as 32.4 2.1E+02 0.0047 21.3 7.6 64 180-252 1-74 (78)
113 PF11614 FixG_C: IG-like fold 32.2 1.3E+02 0.0028 24.7 5.7 49 185-242 34-84 (118)
114 PF11142 DUF2917: Protein of u 32.0 1.3E+02 0.0029 21.8 5.0 30 178-212 2-31 (63)
115 MTH00129 COX2 cytochrome c oxi 30.4 1.5E+02 0.0032 28.0 6.3 62 176-256 140-201 (230)
116 PF10989 DUF2808: Protein of u 29.8 62 0.0014 28.0 3.5 27 465-491 98-128 (146)
117 PRK10525 cytochrome o ubiquino 29.7 1.1E+02 0.0025 30.2 5.6 63 176-257 151-213 (315)
118 MTH00051 COX2 cytochrome c oxi 29.5 1.6E+02 0.0036 27.8 6.5 61 176-255 144-204 (234)
119 PRK13202 ureB urease subunit b 29.1 2E+02 0.0043 23.2 5.7 64 177-241 12-85 (104)
120 COG4633 Plastocyanin domain co 28.9 3.1E+02 0.0067 25.6 7.6 93 2-115 76-173 (272)
121 COG2967 ApaG Uncharacterized p 28.6 65 0.0014 26.6 3.0 55 34-89 33-95 (126)
122 MTH00154 COX2 cytochrome c oxi 28.5 2.1E+02 0.0046 26.8 7.0 62 176-256 140-201 (227)
123 MTH00185 COX2 cytochrome c oxi 28.1 2.2E+02 0.0048 26.8 7.0 63 177-258 141-203 (230)
124 smart00758 PA14 domain in bact 27.9 3.6E+02 0.0077 22.5 8.3 63 178-245 52-115 (136)
125 TIGR03079 CH4_NH3mon_ox_B meth 27.8 1.1E+02 0.0023 30.7 4.9 16 68-83 337-352 (399)
126 TIGR02988 YaaA_near_RecF S4 do 27.4 35 0.00075 24.3 1.2 23 13-35 35-58 (59)
127 MTH00139 COX2 cytochrome c oxi 27.0 2.2E+02 0.0047 26.7 6.8 76 399-506 139-215 (226)
128 TIGR00192 urease_beta urease, 26.9 1.8E+02 0.004 23.3 5.1 59 24-82 12-82 (101)
129 MTH00023 COX2 cytochrome c oxi 26.8 2.4E+02 0.0051 26.8 7.1 62 176-256 151-212 (240)
130 MTH00008 COX2 cytochrome c oxi 26.3 2.6E+02 0.0057 26.3 7.2 76 399-506 139-215 (228)
131 TIGR03396 PC_PLC phospholipase 26.0 2.3E+02 0.0049 31.5 7.6 80 5-93 574-658 (690)
132 PRK13203 ureB urease subunit b 25.6 2E+02 0.0043 23.2 5.1 57 25-81 13-81 (102)
133 MTH00023 COX2 cytochrome c oxi 25.2 2.9E+02 0.0063 26.2 7.4 76 399-506 150-226 (240)
134 COG3354 FlaG Putative archaeal 25.1 2.4E+02 0.0052 24.3 5.8 63 184-251 70-140 (154)
135 MTH00038 COX2 cytochrome c oxi 24.9 3E+02 0.0065 25.9 7.3 75 399-505 139-214 (229)
136 PRK07440 hypothetical protein; 24.4 69 0.0015 23.8 2.4 26 11-36 35-64 (70)
137 PF14344 DUF4397: Domain of un 23.7 4.1E+02 0.0088 21.7 11.9 38 205-242 44-83 (122)
138 PRK05659 sulfur carrier protei 23.3 71 0.0015 23.1 2.3 25 12-36 32-60 (66)
139 cd00407 Urease_beta Urease bet 23.1 2.5E+02 0.0055 22.6 5.3 57 25-81 13-81 (101)
140 TIGR01432 QOXA cytochrome aa3 22.6 1.9E+02 0.0042 26.8 5.6 76 401-508 131-207 (217)
141 MTH00076 COX2 cytochrome c oxi 22.0 2.9E+02 0.0063 26.0 6.6 61 177-256 141-201 (228)
142 MTH00117 COX2 cytochrome c oxi 21.9 3.9E+02 0.0085 25.1 7.5 63 177-258 141-203 (227)
143 cd00565 ThiS ThiaminS ubiquiti 21.7 76 0.0016 23.0 2.1 24 13-36 32-59 (65)
144 cd00918 Der-p2_like Several gr 20.9 4.3E+02 0.0093 22.0 6.7 61 22-83 19-87 (120)
145 TIGR00192 urease_beta urease, 20.8 3.6E+02 0.0079 21.7 5.7 64 177-241 12-84 (101)
146 MTH00038 COX2 cytochrome c oxi 20.5 4E+02 0.0086 25.1 7.2 62 176-256 140-201 (229)
147 MTH00129 COX2 cytochrome c oxi 20.2 3.3E+02 0.0072 25.6 6.6 76 399-506 139-215 (230)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3.4e-106 Score=849.50 Aligned_cols=522 Identities=70% Similarity=1.227 Sum_probs=431.4
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
..+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++.+++|+||++++|||+|+||++|+|+|
T Consensus 13 ~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f 92 (539)
T TIGR03389 13 KNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNF 92 (539)
T ss_pred EEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeeccChHHHHhhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEEc
Q 009854 82 TLAGQRGTLWWHAHILWLRATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTIN 161 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iN 161 (524)
++.+++||||||||...+++||+|+|||+++.+.++++...++|++|+++||++.+...++......|..+..++.++||
T Consensus 93 ~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liN 172 (539)
T TIGR03389 93 TITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTIN 172 (539)
T ss_pred EecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEEC
Confidence 98668999999999988889999999999987766666677999999999999998887777666666656677999999
Q ss_pred CCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeC
Q 009854 162 GHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAA 241 (524)
Q Consensus 162 G~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~ 241 (524)
|+.++++.|+....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|+++
T Consensus 173 G~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~ 252 (539)
T TIGR03389 173 GHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTAD 252 (539)
T ss_pred CCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECC
Confidence 99988888988778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCcce
Q 009854 242 HATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPARVPLKIDH 321 (524)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~ 321 (524)
+.+|+|||++....++. ..+.+....|+|+|.++.....+..+..+.+++......+...+..+..+.++..+|..+++
T Consensus 253 ~~~g~y~i~~~~~~~~~-~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~ 331 (539)
T TIGR03389 253 QSPGRYFMAARPYMDAP-GAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDR 331 (539)
T ss_pred CCCceEEEEEeccccCc-cCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCe
Confidence 88899999998764443 11334568999999886553323233333333322111111234444333344445556677
Q ss_pred EEEEEeccCccCCc--c--ccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCCCccccCCCCC-CCCcccC
Q 009854 322 SLFFTIGLGINPCA--T--CVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQ-PANFQTN 396 (524)
Q Consensus 322 ~~~~~~~~~~~~~~--~--~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~-~~~~~~~ 396 (524)
++.+.+.+...... . ..++..+.|++|+++|..|..++|++.+..+.|.+..+++..+|+.+++++.. +.+...+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 411 (539)
T TIGR03389 332 RLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTT 411 (539)
T ss_pred EEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccc
Confidence 76666554321110 0 11345678999999999998888887666666767677888888888776643 2222234
Q ss_pred CCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEE
Q 009854 397 NGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRF 476 (524)
Q Consensus 397 ~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf 476 (524)
.++.++.++.|++|||+|+|........||||||||+|+||++|.|.|+..+....+|+.||++|||+.||++||++|||
T Consensus 412 ~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf 491 (539)
T TIGR03389 412 NGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRF 491 (539)
T ss_pred cCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEE
Confidence 46788999999999999999653335589999999999999999999986555557899999999999999999999999
Q ss_pred EeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 477 RADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 477 ~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
++||||.|+|||||+||+..||+++|.+.++++..++++++|..+|+|
T Consensus 492 ~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 492 VADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred ecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999998888788999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=7.3e-102 Score=808.02 Aligned_cols=504 Identities=28% Similarity=0.457 Sum_probs=407.6
Q ss_pred cccCCCC--ccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEE
Q 009854 2 KNATRLC--STKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIY 79 (524)
Q Consensus 2 ~~~~~~g--~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y 79 (524)
..++||| ..+++++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++ |||||+||++|+|
T Consensus 37 ~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY 115 (596)
T PLN00044 37 VSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTY 115 (596)
T ss_pred EEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCC-CcCCcCCCCcEEE
Confidence 3578999 567999999999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred EEEeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCC-ccEEEEeceeecccHHHHHHHHHhcCCCCCCCce
Q 009854 80 NFTLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPH-KEVTVILSEWWKSDVEAVINEALKSGLAPNVSDA 157 (524)
Q Consensus 80 ~~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 157 (524)
+|++.+++||||||+|...|+ +||+|+|||++++..+.|+...+ +|.+|+++||++.+...+ ......|..+..++.
T Consensus 116 ~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~ 194 (596)
T PLN00044 116 QFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-RRALDAGDLLGAPDG 194 (596)
T ss_pred EEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-HHHHhcCCCCCCCCc
Confidence 999966899999999999988 89999999999876666665444 799999999999886653 344445544456789
Q ss_pred EEEcCCCCCCCCCC----CCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCce
Q 009854 158 HTINGHPGPLSSCP----SQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQT 233 (524)
Q Consensus 158 ~~iNG~~~~~~~~~----~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR 233 (524)
.+|||+....++|. +...+.++|++|++|||||||++....+.|+|+||+|+||++||.+++|+.+|+|.|++|||
T Consensus 195 ~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQR 274 (596)
T PLN00044 195 VLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQS 274 (596)
T ss_pred eEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCce
Confidence 99999965444554 23446899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC-ceEEEEee-CCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCC-CCCccccccccccccccCCCC
Q 009854 234 TNVLLSAAHATG-KYLVAASP-FLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPP-RNATPVAANFTASLRSLNSKK 310 (524)
Q Consensus 234 ~dv~v~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~l~~l~~~~ 310 (524)
|||+|+++++++ +|||++.. +..+. .+++....|||+|.++........|..+. +.+.....++...++.+..+.
T Consensus 275 ydVLV~a~q~~~~~Y~i~a~~~~~~~~--~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~ 352 (596)
T PLN00044 275 YSFLLTMDQNASTDYYVVASARFVDAA--VVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTAS 352 (596)
T ss_pred EEEEEECCCCCCCceEEEEecccccCc--cccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCC
Confidence 999999999765 89999864 22322 24556788999998865422212344443 455444433444555443332
Q ss_pred CCCCCCCCcceEEEEEeccCc-cCCc-cccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCCCccccCCCC
Q 009854 311 YPARVPLKIDHSLFFTIGLGI-NPCA-TCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNPPVTYNFTGT 388 (524)
Q Consensus 311 ~p~~~p~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~ 388 (524)
.+...|...+....+.+.... ..+. ......++.|++||++|..|+.++|.+++.+.+|.+..+||+.||..
T Consensus 353 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~------ 426 (596)
T PLN00044 353 GARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNR------ 426 (596)
T ss_pred cCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCcc------
Confidence 223334333433333332111 0000 00111368899999999999999998877777899988898887731
Q ss_pred CCCCcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecC
Q 009854 389 QPANFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPS 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp 468 (524)
....++.+..+++|++|||+|+|.. ...||||||||+|+||++|.|.|++. +...+|+.||++||||.|++
T Consensus 427 -----~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~ 497 (596)
T PLN00044 427 -----LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFP 497 (596)
T ss_pred -----ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCC
Confidence 1123567889999999999999953 45899999999999999999999965 45689999999999999999
Q ss_pred CcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCC-CCCCCCCCCCCCCC
Q 009854 469 GGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGP-NESLLPPPSDLPKC 524 (524)
Q Consensus 469 ~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~p~~~p~c 524 (524)
+||++|||++||||.|++||||+.|...||.+.|.|+++.+. .+++++||.++|+|
T Consensus 498 ~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 498 GAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999999875 78999999999999
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=7.6e-102 Score=805.45 Aligned_cols=487 Identities=26% Similarity=0.453 Sum_probs=396.9
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
..++|||+.+++++|||++|||+|++++||+|+|+|+|+|+++++|||||+++..++|+||+++ +||||+||++|+|+|
T Consensus 26 ~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F 104 (536)
T PLN02792 26 GNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDF 104 (536)
T ss_pred EEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred EeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCC-CCCCceEE
Q 009854 82 TLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLA-PNVSDAHT 159 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 159 (524)
++.+++||||||+|...|+ +||+|+|||.+++..+.+++.+++|++++++||++++...+ ......+.. +..++.+|
T Consensus 105 ~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~~~g~~~~~~~d~~l 183 (536)
T PLN02792 105 QVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTL-KKILDGGRKLPLMPDGVM 183 (536)
T ss_pred EeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHH-HHHhhccCcCCCCCCEEE
Confidence 9966899999999999887 89999999988665556666778999999999999886553 333334433 44789999
Q ss_pred EcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEE
Q 009854 160 INGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLS 239 (524)
Q Consensus 160 iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~ 239 (524)
|||+... ..+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|+
T Consensus 184 iNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 184 INGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred EeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEE
Confidence 9999642 126799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCc
Q 009854 240 AAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPARVPLKI 319 (524)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~ 319 (524)
+++++|+|+|++.....+. +....|||+|.++....+ ..+..|.+++......+...++.+..+..+...|...
T Consensus 257 a~~~~g~Y~i~a~~~~~~~-----~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 330 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAA-----KVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGS 330 (536)
T ss_pred cCCCCceEEEEEEeccCCC-----CCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcc
Confidence 9998899999998643221 346789999988644321 2233344444433333322333333322233444332
Q ss_pred ce--------EEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCC-CCCCCCccccCCCCCC
Q 009854 320 DH--------SLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDD-FPGNPPVTYNFTGTQP 390 (524)
Q Consensus 320 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~ 390 (524)
++ ++.+...+.. .+..+.|++|+++|..|+.|+|.+++..+.|.+..+ |+..||..++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~----- 398 (536)
T PLN02792 331 YHYGKMKISRTLILESSAAL-------VKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGM----- 398 (536)
T ss_pred cccceeccceeEEecccccc-------cCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCC-----
Confidence 22 2222211111 123578999999999999999988776666777553 77766643221
Q ss_pred CCcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCc
Q 009854 391 ANFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGG 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g 470 (524)
..++.++.+++|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+.||++||||.|+++|
T Consensus 399 -----~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~~g 469 (536)
T PLN02792 399 -----RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYPES 469 (536)
T ss_pred -----ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEEECCCC
Confidence 23567889999999999999953 45799999999999999999999864 4568999999999999999999
Q ss_pred EEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 471 WTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 471 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
|++|||++||||+|+||||+.+|+..||.++|.|+++..+.+++++||+++|+|
T Consensus 470 w~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 470 WTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred EEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999998889999999999999
No 4
>PLN02991 oxidoreductase
Probab=100.00 E-value=3.3e-101 Score=799.21 Aligned_cols=483 Identities=27% Similarity=0.475 Sum_probs=389.3
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
+.++|||.++++++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++...+|+||+++ +||||+||++|+|+|
T Consensus 38 ~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F 116 (543)
T PLN02991 38 GNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYAL 116 (543)
T ss_pred EEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CCCccCCCCcEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred EeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEE
Q 009854 82 TLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTI 160 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~i 160 (524)
++.+++||||||+|...++ +||+|+|||+++...+.++..+++|++|+++||+++....+... ...+.....++.++|
T Consensus 117 ~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~~~~~~~~~~d~~li 195 (543)
T PLN02991 117 QVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-LDNGGKLPLPDGILI 195 (543)
T ss_pred EeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-hhcCCCCCCCCEEEE
Confidence 9966899999999998887 89999999999876666666678899999999999886654433 334445557899999
Q ss_pred cCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEe
Q 009854 161 NGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSA 240 (524)
Q Consensus 161 NG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~ 240 (524)
||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++
T Consensus 196 NG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a 266 (543)
T PLN02991 196 NGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITA 266 (543)
T ss_pred ccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEEC
Confidence 99963 257999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCC--
Q 009854 241 AHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPARVPLK-- 318 (524)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~-- 318 (524)
++++|+|||++...... ......|||+|.++..+.....|..|. +......+.+..+....+..+...|..
T Consensus 267 ~~~~~~y~i~~~~~~~~-----~~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~~~~~~~~~~~~l~p~~~~~~p~~~~ 339 (543)
T PLN02991 267 DQPAKDYYIVVSSRFTS-----KILITTGVLHYSNSAGPVSGPIPDGPI--QLSWSFDQARAIKTNLTASGPRPNPQGSY 339 (543)
T ss_pred CCCCCcEEEEEeeccCC-----CCcceEEEEEeCCCCCCCCCCCCCCCc--cccccccchhhhhhcccCCCCCCCCCccc
Confidence 99889999998753222 124578999999875432111222221 111111111111111111111122222
Q ss_pred ------cceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCC-CCCCCCccccCCCCCCC
Q 009854 319 ------IDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDD-FPGNPPVTYNFTGTQPA 391 (524)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~ 391 (524)
.++.+.+...+.. ..+++.|++|+.+|..|+.|+|.+++..++|.|..+ ++..++..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~-------~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~--------- 403 (543)
T PLN02991 340 HYGKINITRTIRLANSAGN-------IEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNG--------- 403 (543)
T ss_pred cccccccceeEEEeecccc-------cCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCC---------
Confidence 2222222221111 123578999999999999999988777777877654 44444310
Q ss_pred CcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcE
Q 009854 392 NFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGW 471 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~ 471 (524)
.....+.++.+++|++|||+|+|.. ...||||||||+|+||++|.|.|++. +...+|+.||++|||+.||++||
T Consensus 404 --~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw 477 (543)
T PLN02991 404 --AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSW 477 (543)
T ss_pred --ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCE
Confidence 1123456789999999999999954 45899999999999999999999875 45679999999999999999999
Q ss_pred EEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 472 TAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 472 v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
++|||++||||.|+|||||.+|+..||.+++.|+++..+.+++++||.++|+|
T Consensus 478 ~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 478 TAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred EEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999899999999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.1e-100 Score=797.64 Aligned_cols=483 Identities=26% Similarity=0.479 Sum_probs=382.1
Q ss_pred ccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEE
Q 009854 3 NATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFT 82 (524)
Q Consensus 3 ~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~ 82 (524)
.+++||+++++|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++..++|+||+++ +||||+||++|+|+|+
T Consensus 40 ~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~ 118 (539)
T PLN02835 40 TISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQ 118 (539)
T ss_pred EeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEEc
Q 009854 83 LAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTIN 161 (524)
Q Consensus 83 ~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iN 161 (524)
+.+++||||||+|...|+ +||+|+|||+++...+.+++.+++|++|+++||++++...+. .....|.....++.++||
T Consensus 119 ~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~liN 197 (539)
T PLN02835 119 TKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQ-QRLDSGKVLPFPDGVLIN 197 (539)
T ss_pred ECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHH-HHhhcCCCCCCCceEEEc
Confidence 866899999999998888 899999999876555556667899999999999998876543 333345455678999999
Q ss_pred CCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeC
Q 009854 162 GHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAA 241 (524)
Q Consensus 162 G~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~ 241 (524)
|+.. +.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|..+++|.|++||||||+|+++
T Consensus 198 G~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~ 267 (539)
T PLN02835 198 GQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLN 267 (539)
T ss_pred cccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcC
Confidence 9975 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCC---CccccccccccccccCCCCCCCC---C
Q 009854 242 HATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRN---ATPVAANFTASLRSLNSKKYPAR---V 315 (524)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~l~~l~~~~~p~~---~ 315 (524)
+.+|+|+|++.....+ ......|+|+|.++..+....+|..|... +..........+........+.. .
T Consensus 268 ~~~g~y~i~a~~~~~~-----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 342 (539)
T PLN02835 268 QSPKDYYIVASTRFTR-----QILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHY 342 (539)
T ss_pred CCCCcEEEEEEccccC-----CCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccc
Confidence 8889999998642221 13467899999886432222223222210 00000000001111111000000 0
Q ss_pred -CCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCC-CCCCCccccCCCCCCCCc
Q 009854 316 -PLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDF-PGNPPVTYNFTGTQPANF 393 (524)
Q Consensus 316 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~ 393 (524)
....++++.+...... .+| ...|++|+++|..|+.|+|.+++...+|.++... ...++ +.
T Consensus 343 ~~~~~~~~~~~~~~~~~------~~g-~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~-----------~~ 404 (539)
T PLN02835 343 GKITPTKTIVLANSAPL------ING-KQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPS-----------GG 404 (539)
T ss_pred cccCCCceEEEeccccc------cCC-eEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCC-----------CC
Confidence 0112344433321111 123 5679999999998888888776555555554321 11111 11
Q ss_pred ccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEE
Q 009854 394 QTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTA 473 (524)
Q Consensus 394 ~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~ 473 (524)
..+.++.++.+++|++|||+|+|.. ...||||||||+|+||++|.|.|++. ....+|+.||++||||.|+++||++
T Consensus 405 ~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~ 480 (539)
T PLN02835 405 PAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTT 480 (539)
T ss_pred ccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEE
Confidence 1234578889999999999999964 56899999999999999999988754 2456788999999999999999999
Q ss_pred EEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 474 IRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 474 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
|||+|||||.|+|||||++|+..||+++|.|+++.+..++++++|.++|+|
T Consensus 481 IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 481 ILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred EEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 999999999999999999999999999999999998889999999999999
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.9e-99 Score=787.61 Aligned_cols=486 Identities=27% Similarity=0.469 Sum_probs=380.0
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
...+|||+.+++|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++ |||||+||++|+|+|
T Consensus 36 ~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F 114 (545)
T PLN02168 36 SQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRF 114 (545)
T ss_pred EEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEE
Q 009854 82 TLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTI 160 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~i 160 (524)
++++++||||||+|...|+ +||+|+|||++++..+.+++.+++|+.|+++||++.+...+. .....+.....++.++|
T Consensus 115 ~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~li 193 (545)
T PLN02168 115 QVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMR-ASLDNGHSLPNPDGILF 193 (545)
T ss_pred EeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHH-hhhhcCCCCCCCCEEEE
Confidence 9966899999999999888 899999999998776666667889999999999998754432 22333433446789999
Q ss_pred cCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEe
Q 009854 161 NGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSA 240 (524)
Q Consensus 161 NG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~ 240 (524)
||+.. ..+.+++++|++|||||||++..+.+.|+|+||+|+||++||.+++|..+++|.|++||||||+|++
T Consensus 194 NG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a 265 (545)
T PLN02168 194 NGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTA 265 (545)
T ss_pred eccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEc
Confidence 99963 1268999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-C---ceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCC
Q 009854 241 AHAT-G---KYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPARVP 316 (524)
Q Consensus 241 ~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p 316 (524)
++.+ | +|||++.....+. .....|+|+|.++......+.+..|...+.....+...+++....+..+...|
T Consensus 266 ~~~~~g~~~~Y~i~a~~~~~~~-----~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p 340 (545)
T PLN02168 266 KTDPVGIYRSYYIVATARFTDA-----YLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNP 340 (545)
T ss_pred CCCCCCCcceEEEEEEecccCC-----CcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCC
Confidence 8654 4 7999998633222 34678999998764432222333333333322222222222111111111222
Q ss_pred CC--------cceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCC-CCCCCCccccCCC
Q 009854 317 LK--------IDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDD-FPGNPPVTYNFTG 387 (524)
Q Consensus 317 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~-~~~~~p~~~~~~~ 387 (524)
.. .++++.+.... .. .+| ...|++||++|..|+.|++.+++..+.+.+..+ ++..||.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~--~~----~~g-~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~------ 407 (545)
T PLN02168 341 QGSYHYGRINVTRTIILHNDV--ML----SSG-KLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSN------ 407 (545)
T ss_pred cccccccccccceeEEecccc--cc----cCc-eEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCc------
Confidence 11 22222222111 00 123 578999999999999888876554443333222 4444431
Q ss_pred CCCCCcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEec
Q 009854 388 TQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVP 467 (524)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp 467 (524)
.....++.++.+++|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.||
T Consensus 408 -----~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl~nP~rRDTv~vp 478 (545)
T PLN02168 408 -----KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGYNLVDAVSRSTVQVY 478 (545)
T ss_pred -----CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccCCCCCCCccceEEeC
Confidence 00112467889999999999999953 458999999999999999999998653 457899999999999999
Q ss_pred CCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCC------CCCCCCCCCCCCCCC
Q 009854 468 SGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKG------PNESLLPPPSDLPKC 524 (524)
Q Consensus 468 p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~------~~~~~~~~p~~~p~c 524 (524)
++||++|||++||||.|+|||||++|.+.||.+.++|++++. +.+.++++|+++++|
T Consensus 479 ~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 479 PYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred CCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 999999999999999999999999999999999998875544 356789999999999
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.4e-99 Score=792.48 Aligned_cols=491 Identities=25% Similarity=0.468 Sum_probs=386.9
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
..++|||..+++|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++ |||||+||++|+|+|
T Consensus 37 ~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F 115 (552)
T PLN02354 37 GTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHF 115 (552)
T ss_pred EEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-CcCCCCCCCcEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEE
Q 009854 82 TLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTI 160 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~i 160 (524)
++.+++||||||+|...|+ +||+|+|||+++...+.+++.+++|++|+++||+++....+. .....|.....++.+||
T Consensus 116 ~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~li 194 (552)
T PLN02354 116 QPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALK-KFLDSGRTLGRPDGVLI 194 (552)
T ss_pred EeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHH-HHHhcCCCCCCCCeEEE
Confidence 9866899999999999888 899999999998765666666789999999999998766543 33444444445789999
Q ss_pred cCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEe
Q 009854 161 NGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSA 240 (524)
Q Consensus 161 NG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~ 240 (524)
||+....+ ....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++
T Consensus 195 NG~~~~~~---~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a 271 (552)
T PLN02354 195 NGKSGKGD---GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTA 271 (552)
T ss_pred eCCcCCCC---CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEEC
Confidence 99975322 123478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccc----cccccccccCCCCCCCCC-
Q 009854 241 AHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAA----NFTASLRSLNSKKYPARV- 315 (524)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~l~~l~~~~~p~~~- 315 (524)
++++|+|+|++.....+ .+....|+|+|.++.....+..|..+. +..... .+...+......+.+...
T Consensus 272 ~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~l~~~~~~p~~~~~~ 344 (552)
T PLN02354 272 NQAPKDYYMVASTRFLK-----KVLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSFRWNLTASAARPNPQGSY 344 (552)
T ss_pred CCCCCcEEEEEeccccC-----CCccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhhhhcccccccCCCCCCcc
Confidence 98889999998742222 234678999998865433222222211 100000 111111111111111000
Q ss_pred ---CCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhcccc-ccccCC-CCCCCCccccCCCCCC
Q 009854 316 ---PLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIG-GVFTDD-FPGNPPVTYNFTGTQP 390 (524)
Q Consensus 316 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~-g~~~~~-~~~~~p~~~~~~~~~~ 390 (524)
....++++.+...... + .+ .+.|++|+++|..|+.|.|.+.+.++. |.++.+ ++..+|...+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~--~----~g-~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~------ 411 (552)
T PLN02354 345 HYGKINITRTIKLVNSASK--V----DG-KLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT------ 411 (552)
T ss_pred ccccccccceEEEeccccc--C----Cc-eEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccC------
Confidence 0112333433332111 0 22 577999999999999999887654443 655433 3444442211
Q ss_pred CCcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCc
Q 009854 391 ANFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGG 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g 470 (524)
....+..++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. ....+|+.||++|||+.||++|
T Consensus 412 ---~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~G 484 (552)
T PLN02354 412 ---KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKS 484 (552)
T ss_pred ---ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCC
Confidence 0123557889999999999999953 56899999999999999999999865 3567899999999999999999
Q ss_pred EEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 471 WTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 471 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
|++|||++||||+|+|||||+.|+..||.+.|+|.++.+..++++++|++.+.|
T Consensus 485 w~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 485 WAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred eEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 999999999999999999999999999999999998888778888899999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-98 Score=772.99 Aligned_cols=510 Identities=50% Similarity=0.894 Sum_probs=452.3
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
..+.|+|.+++++++||++|||+|+|++||+|.|+|.|.+.++++|||||+++...+|+|| +.+|||||+||++|+|+|
T Consensus 38 ~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F 116 (563)
T KOG1263|consen 38 GTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRF 116 (563)
T ss_pred eeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-CccccCCcCCCCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred EeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecc-cHHHHHHHHHhcCCCCCCCceEE
Q 009854 82 TLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKS-DVEAVINEALKSGLAPNVSDAHT 159 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 159 (524)
+++++.||||||+|...++ +|++|+|||.++...++|++.+++|++|+++||+.+ ....+.......+..+..+|..+
T Consensus 117 ~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~ 196 (563)
T KOG1263|consen 117 TVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVL 196 (563)
T ss_pred EeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceE
Confidence 9988999999999999999 899999999999988889999999999999999996 66666666666666666689999
Q ss_pred EcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEE
Q 009854 160 INGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLS 239 (524)
Q Consensus 160 iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~ 239 (524)
|||+.+..++| .+.++|++||+|||||+|+|....+.|+|.||+|+||++||.+++|..++++.|.||||++|+++
T Consensus 197 iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvt 272 (563)
T KOG1263|consen 197 INGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLT 272 (563)
T ss_pred ECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEe
Confidence 99999988999 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCC---CCCCCCCCCCCccccccccccccccCCCCCCCCCC
Q 009854 240 AAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTA---TTLTVPPPRNATPVAANFTASLRSLNSKKYPARVP 316 (524)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p 316 (524)
+++.+++|+|++.++.++....+ +....++++|.++..... +..+.++...+...+..+...++.+.....+...|
T Consensus 273 adq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P 351 (563)
T KOG1263|consen 273 ADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVP 351 (563)
T ss_pred CCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccCC
Confidence 99999999999998766542233 567899999998433322 23344566566666777777888887777777888
Q ss_pred CCcceEEEEEeccCccCCccc-cCCceEEEEecCeeeecCcc-hhhhhhhccccccccCCCCCCCCccccCCCCCCCCcc
Q 009854 317 LKIDHSLFFTIGLGINPCATC-VNGSRVVADINNVTFVMPTI-SLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQPANFQ 394 (524)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~in~~~~~~p~~-~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 394 (524)
...++........+...+... ..+.++.+++|+.+|..|+. .++..+++..+|.+..+++..|+..+++++
T Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~------- 424 (563)
T KOG1263|consen 352 QGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG------- 424 (563)
T ss_pred CccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCcc-------
Confidence 888887777766665555432 34568889999999999987 455567777778888899999988888776
Q ss_pred cCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCC-CCCCCCCCCcCceeEecCCcEEE
Q 009854 395 TNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDP-KKFNLVDPVERNTIGVPSGGWTA 473 (524)
Q Consensus 395 ~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~-~~~~~~~p~~rDTv~vpp~g~v~ 473 (524)
.+.++.++.++++++||++++|.+......|||||||+.|+|++.|.|.|++..+. ..+|+.+|+.||||.|+||||++
T Consensus 425 ~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~a 504 (563)
T KOG1263|consen 425 PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTA 504 (563)
T ss_pred ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEE
Confidence 35688999999999999999999876777899999999999999999999995566 78999999999999999999999
Q ss_pred EEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 474 IRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 474 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
|||.|||||.|++||||++|...||.++|+|.++.++.+++.++|+++++|
T Consensus 505 Irf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 505 IRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred EEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999
No 9
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3e-94 Score=758.14 Aligned_cols=499 Identities=33% Similarity=0.565 Sum_probs=377.5
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCccccccCCCCCceEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYN 80 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~ 80 (524)
..++|||+.+.+|+|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++|+||+++++||+|+||++++|+
T Consensus 11 ~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~ 90 (541)
T TIGR03388 11 EFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYN 90 (541)
T ss_pred EEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEE
Confidence 46899999999999999999999999999999999999995 88999999999999999999999999999999999999
Q ss_pred EEeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcC-CCCCCCceE
Q 009854 81 FTLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSG-LAPNVSDAH 158 (524)
Q Consensus 81 ~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g-~~~~~~~~~ 158 (524)
|++ .++||||||||...+. +||+|+|||+++..+..++ .+|+|++|+++||+++............. .....++.+
T Consensus 91 f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (541)
T TIGR03388 91 FVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSL 168 (541)
T ss_pred EEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcce
Confidence 998 7899999999998887 8999999999886544444 36899999999999987754433222111 111345889
Q ss_pred EEcCCCCCCCCCCCC-------------------CceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccc
Q 009854 159 TINGHPGPLSSCPSQ-------------------GGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVK 219 (524)
Q Consensus 159 ~iNG~~~~~~~~~~~-------------------~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~ 219 (524)
+|||+.. +.|... ....++|++|++|||||||++..+.+.|+|+||+|+|||+||.+++
T Consensus 169 liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~ 246 (541)
T TIGR03388 169 LINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVE 246 (541)
T ss_pred EECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecc
Confidence 9999864 334211 1245899999999999999999999999999999999999999999
Q ss_pred eeEecEEEeCCCceEEEEEEeCCCC-CceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCC--CCCCCCCCCCcccc
Q 009854 220 PFKTETVLIAPGQTTNVLLSAAHAT-GKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTAT--TLTVPPPRNATPVA 296 (524)
Q Consensus 220 P~~~d~v~l~pgeR~dv~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~--~~~~~p~~~~~~~~ 296 (524)
|+.++.|.|++||||||+|++++.+ |+|||++.....+ .......|||+|.++.....+ +.+..|.+.+....
T Consensus 247 P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~----~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~ 322 (541)
T TIGR03388 247 PFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK----PNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRS 322 (541)
T ss_pred cceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC----CCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchh
Confidence 9999999999999999999999866 4899998754321 123457899999875443211 11223333332211
Q ss_pred ccccccccccCCCCCCCCCCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCC
Q 009854 297 ANFTASLRSLNSKKYPARVPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFP 376 (524)
Q Consensus 297 ~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~ 376 (524)
..+. +..+..... ...+...++++.+...... ......|.+|+++|..|..|.|.+.+....+.+..+.+
T Consensus 323 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~ 392 (541)
T TIGR03388 323 KAFS--LAIKAAMGS-PKPPETSDRRIVLLNTQNK-------INGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPP 392 (541)
T ss_pred hccc--hhhhccccC-CCCCCCCCcEEEEeccCcc-------cCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCC
Confidence 1111 111111111 1233456776654332211 11246699999999988888877755433333322211
Q ss_pred -CCCCccccCCCCCCCCcccCCCceEEEccCCCEEEEEEEcCCCC---CCCCCCeeecCcceEEEeecCCCCCCCCCCCC
Q 009854 377 -GNPPVTYNFTGTQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMI---APENHPLHLHGFNFFEVGRGLGNFNSKKDPKK 452 (524)
Q Consensus 377 -~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~ 452 (524)
...+..|+.... +.+...+.++.++.++.|++||++|+|.... ....||||||||+||||++|.|.|+...+...
T Consensus 393 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~ 471 (541)
T TIGR03388 393 PENYPRDYDIFKP-PPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKS 471 (541)
T ss_pred cccccccccccCC-CcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCccc
Confidence 011111111110 1112234567888999999999999996422 25689999999999999999999986555567
Q ss_pred CCCCCCCcCceeEecCCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 453 FNLVDPVERNTIGVPSGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 453 ~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+. .+.++.+|+++++|
T Consensus 472 ~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~~~~~P~~~~~C 538 (541)
T TIGR03388 472 YNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEKVGKLPKEALGC 538 (541)
T ss_pred ccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----ccccCCCCccccCC
Confidence 89999999999999999999999999999999999999999999999999654 25678899999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=7.8e-94 Score=754.71 Aligned_cols=498 Identities=31% Similarity=0.545 Sum_probs=370.4
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCccccccCCCCCceEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYN 80 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~ 80 (524)
..++|||..+++++|||++|||+||+++||+|+|+|+|.|+ ++|+|||||+++..++|+||+++++||+|+||++|+|+
T Consensus 33 ~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~ 112 (574)
T PLN02191 33 KYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYK 112 (574)
T ss_pred EEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEE
Confidence 35789999999999999999999999999999999999997 78999999999999999999999999999999999999
Q ss_pred EEeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHh-cCCCCCCCceE
Q 009854 81 FTLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALK-SGLAPNVSDAH 158 (524)
Q Consensus 81 ~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~-~g~~~~~~~~~ 158 (524)
|++ .++||||||||...|+ +||+|+|||+++.+...+. .+|+|++|+++||++............ .......++.+
T Consensus 113 f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 190 (574)
T PLN02191 113 FTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSI 190 (574)
T ss_pred EEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCce
Confidence 999 7899999999999888 8999999998765433222 468999999999999765432222111 11112346889
Q ss_pred EEcCCCCCCCCCCC-------------------CCc-eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccc
Q 009854 159 TINGHPGPLSSCPS-------------------QGG-FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV 218 (524)
Q Consensus 159 ~iNG~~~~~~~~~~-------------------~~~-p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~ 218 (524)
+|||+.. +.|.. ... ..++|++||+|||||||+|+.+.+.|+|+||+|+|||+||.++
T Consensus 191 liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v 268 (574)
T PLN02191 191 LINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYI 268 (574)
T ss_pred EECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeec
Confidence 9999864 34421 112 3699999999999999999999999999999999999999999
Q ss_pred ceeEecEEEeCCCceEEEEEEeCCCC-CceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCC--CCCCCCCCCccc
Q 009854 219 KPFKTETVLIAPGQTTNVLLSAAHAT-GKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATT--LTVPPPRNATPV 295 (524)
Q Consensus 219 ~P~~~d~v~l~pgeR~dv~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~--~~~~p~~~~~~~ 295 (524)
+|+.+++|.|++||||||+|++++.+ ++||||+.....+. ......|||+|.+......+. .+..|.+.+...
T Consensus 269 ~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~----~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~ 344 (574)
T PLN02191 269 TPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP----NTTQALTILNYVTAPASKLPSSPPPVTPRWDDFER 344 (574)
T ss_pred cceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC----CCCCceEEEEECCCCCCCCCCCCCCCCCcccccch
Confidence 99999999999999999999999876 58999997533221 122356999998765432111 112233333221
Q ss_pred cccccccccccCCCCCCCCCCC-CcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCC
Q 009854 296 AANFTASLRSLNSKKYPARVPL-KIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDD 374 (524)
Q Consensus 296 ~~~~~~~l~~l~~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~ 374 (524)
...+...+ +.....+ ..|. ..+.++.+..... ......|.+|+++|..|..|.|.+......+.+...
T Consensus 345 ~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~~--------~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~ 413 (574)
T PLN02191 345 SKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQNL--------IDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRK 413 (574)
T ss_pred hhcccccc--cccccCC-CCCCcccceEEEecccce--------eCCeEEEEECcccCcCCCcchHHHHhhccCcccccC
Confidence 11111111 1110011 1222 2344443321110 112457999999999888888877654444444433
Q ss_pred CCCCC-CccccCCCCCCCCcccCCCceEEEccCCCEEEEEEEcCCCC---CCCCCCeeecCcceEEEeecCCCCCCCCCC
Q 009854 375 FPGNP-PVTYNFTGTQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMI---APENHPLHLHGFNFFEVGRGLGNFNSKKDP 450 (524)
Q Consensus 375 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~ 450 (524)
.+... +..|+..+... ....+.+..++.++.|++|||+|+|.... ....||||||||+||||++|.|.|++....
T Consensus 414 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~ 492 (574)
T PLN02191 414 SPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDE 492 (574)
T ss_pred CCcccccccccccCCCc-cccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCc
Confidence 33211 11121111110 01123356788999999999999996411 357899999999999999999999875445
Q ss_pred CCCCCCCCCcCceeEecCCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 451 KKFNLVDPVERNTIGVPSGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 451 ~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
..+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|... .++++.+|++++.|
T Consensus 493 ~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~-----~~~~~~~p~~~~~C 561 (574)
T PLN02191 493 KTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEG-----LNRIGKIPDEALGC 561 (574)
T ss_pred ccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecC-----hhhccCCCcchhhh
Confidence 6789999999999999999999999999999999999999999999999999532 24556688889999
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=1e-92 Score=748.28 Aligned_cols=500 Identities=34% Similarity=0.575 Sum_probs=378.2
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCCccccccCCCCCceEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHV-KYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYN 80 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~ 80 (524)
..++|||+.+++|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+.+|+||+++++||+|+||++++|+
T Consensus 34 ~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~ 113 (566)
T PLN02604 34 EYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYE 113 (566)
T ss_pred EEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEE
Confidence 3679999999999999999999999999999999999998 589999999999998899999999999999999999999
Q ss_pred EEeCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhc-CCCCCCCceE
Q 009854 81 FTLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKS-GLAPNVSDAH 158 (524)
Q Consensus 81 ~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~-g~~~~~~~~~ 158 (524)
|++ +++||||||||...++ +||+|+|||+++.+...++ .+++|.+|+++||++....+........ ......++..
T Consensus 114 f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 191 (566)
T PLN02604 114 FVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSL 191 (566)
T ss_pred EEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCce
Confidence 998 7999999999998887 8999999999886544444 3688999999999998876544432211 1111356899
Q ss_pred EEcCCCCCCCCCCC-----------------CCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccccee
Q 009854 159 TINGHPGPLSSCPS-----------------QGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPF 221 (524)
Q Consensus 159 ~iNG~~~~~~~~~~-----------------~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~ 221 (524)
+|||+.. +.|+. ...+.+++++|++|||||||+++.+.+.|+|+||+|+|||+||.+++|+
T Consensus 192 liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~ 269 (566)
T PLN02604 192 LIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPF 269 (566)
T ss_pred EEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccc
Confidence 9999864 34431 1335789999999999999999999999999999999999999999999
Q ss_pred EecEEEeCCCceEEEEEEeCCCCC-ceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCC-CCCC-CCCCCCCCcccccc
Q 009854 222 KTETVLIAPGQTTNVLLSAAHATG-KYLVAASPFLDTPAILVDNKTATATVHYSGTLGST-ATTL-TVPPPRNATPVAAN 298 (524)
Q Consensus 222 ~~d~v~l~pgeR~dv~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~~-~~~p~~~~~~~~~~ 298 (524)
.++.|.|++||||||+|++++.+| +|||++.....+. +.....|||+|.+..... .+.. +..+.+++......
T Consensus 270 ~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~----~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (566)
T PLN02604 270 VVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN----TTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLN 345 (566)
T ss_pred eeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC----CCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhc
Confidence 999999999999999999998775 8999987543321 235678999998643221 1111 11122222111111
Q ss_pred ccccccccCCCCCCCCCCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCC-C
Q 009854 299 FTASLRSLNSKKYPARVPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFP-G 377 (524)
Q Consensus 299 ~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~-~ 377 (524)
....+..+.. .+...+...++++.+...... ....+.|++|+++|..|+.|.|.+.+....+.++.+.+ .
T Consensus 346 ~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-------~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~ 416 (566)
T PLN02604 346 QSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE-------VNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPE 416 (566)
T ss_pred chhccccccc--CcCCCCCCCCeEEEEeccccc-------cCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCc
Confidence 0111111111 111223345666654332221 11256799999999988888887765544455542211 0
Q ss_pred CCC-ccccCCCCCCCCcccCCCceEEEccCCCEEEEEEEcCCCC---CCCCCCeeecCcceEEEeecCCCCCCCCCCCCC
Q 009854 378 NPP-VTYNFTGTQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMI---APENHPLHLHGFNFFEVGRGLGNFNSKKDPKKF 453 (524)
Q Consensus 378 ~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~ 453 (524)
.++ ..|+.... ..+.....+..++.++.|++||++|+|.... ....||||||||+|+||++|.|.|++.++...+
T Consensus 417 ~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~ 495 (566)
T PLN02604 417 GYDFANYDIYAK-PNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKY 495 (566)
T ss_pred ccccccccccCC-ccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCcccccccc
Confidence 000 00111100 1111223356788999999999999996421 356799999999999999999999876666788
Q ss_pred CCCCCCcCceeEecCCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009854 454 NLVDPVERNTIGVPSGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGKGPNESLLPPPSDLPKC 524 (524)
Q Consensus 454 ~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~p~c 524 (524)
|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+. .+.++.+|..+++|
T Consensus 496 nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 496 NLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred CCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 9999999999999999999999999999999999999999999999999754 24778899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.2e-91 Score=736.05 Aligned_cols=482 Identities=27% Similarity=0.477 Sum_probs=363.5
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCccccccCCCCCceEEE
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYN 80 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~ 80 (524)
+.+++||+.+.+|+|||++|||+|++++||+|+|+|+|.|+ ++|+|||||+++..++|+||++++|||+|+||++|+|+
T Consensus 18 ~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~ 97 (538)
T TIGR03390 18 DNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYE 97 (538)
T ss_pred eEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEE
Confidence 46789999999999999999999999999999999999996 89999999999999999999999999999999999999
Q ss_pred EEeC-CcccceeeccChHHHHhhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCC-CCCCCceE
Q 009854 81 FTLA-GQRGTLWWHAHILWLRATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGL-APNVSDAH 158 (524)
Q Consensus 81 ~~~~-~~~Gt~wyH~H~~~~~~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~-~~~~~~~~ 158 (524)
|+++ +++||||||||...|+.||+|+|||+++...++ .+|+|++|+++||+++....+......... ....++.+
T Consensus 98 f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (538)
T TIGR03390 98 IKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAV 174 (538)
T ss_pred EEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceE
Confidence 9983 589999999999988888999999998764433 358899999999999887765544332221 12345889
Q ss_pred EEcCCCCCCCCC---C---CCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCce-eeEEEecCcccceeEecEEEeCCC
Q 009854 159 TINGHPGPLSSC---P---SQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHK-LTVVEVDAAYVKPFKTETVLIAPG 231 (524)
Q Consensus 159 ~iNG~~~~~~~~---~---~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~-~~via~DG~~~~P~~~d~v~l~pg 231 (524)
+|||+....... + ....+.++|++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|+.+++|.|++|
T Consensus 175 liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~G 254 (538)
T TIGR03390 175 LLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGG 254 (538)
T ss_pred EECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccC
Confidence 999996533100 0 113478999999999999999999999999999999 999999999999999999999999
Q ss_pred ceEEEEEEeCCC-------CCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccc-cccc
Q 009854 232 QTTNVLLSAAHA-------TGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANF-TASL 303 (524)
Q Consensus 232 eR~dv~v~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~l 303 (524)
|||||+|++++. +|+|||++.....++ .....|||+|.++..+..+..+..+..........+ ...+
T Consensus 255 qRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~-----~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 255 QRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK-----VYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred CEEEEEEECCCccccccCCCCcEEEEEeecCCCC-----cceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 999999999975 489999987543221 235689999986544333222222211110000001 0123
Q ss_pred cccCCCCCC-CCCCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeec--CcchhhhhhhccccccccCCCCCCCC
Q 009854 304 RSLNSKKYP-ARVPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVM--PTISLLQAHFFKIGGVFTDDFPGNPP 380 (524)
Q Consensus 304 ~~l~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~~~~l~~~~~~~~g~~~~~~~~~~p 380 (524)
.++.....+ ...+..+++++.+.+.+.... ..+...|++|+++|.. +..|+|...+.+. . +..++
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-----~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~----~~~~~ 397 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-----LNGRVAWLQNGLSWTESVRQTPYLVDIYENG---L----PATPN 397 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccc-----cCCeEEEEECCcccCCCCCCCchHHHHhcCC---C----CcCCC
Confidence 333221101 012344677777666653211 1235779999999975 6677776643221 0 11110
Q ss_pred ccccCCCCCCCCcccCCCceEEEccCCCEEEEEEEcCCCC-----CCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCC
Q 009854 381 VTYNFTGTQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMI-----APENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNL 455 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~-----~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~ 455 (524)
++ +.. ........+.++.++.|++|||+|+|.... ....||||||||+|+||++|.|.|++......+++
T Consensus 398 --~~--~~~-~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl 472 (538)
T TIGR03390 398 --YT--AAL-ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLEN 472 (538)
T ss_pred --cc--ccc-ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhcc
Confidence 10 000 000112345678899999999999996421 25789999999999999999999987554556788
Q ss_pred CCCCcCceeEec----------CCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCCC
Q 009854 456 VDPVERNTIGVP----------SGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNGK 508 (524)
Q Consensus 456 ~~p~~rDTv~vp----------p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~ 508 (524)
.||++|||+.|| +++|++|||++||||.|+|||||+||+..||+++|.|.+.+
T Consensus 473 ~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 473 YTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred CCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 999999999996 88999999999999999999999999999999999987643
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=5.1e-76 Score=616.22 Aligned_cols=411 Identities=28% Similarity=0.434 Sum_probs=305.0
Q ss_pred ccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEE
Q 009854 3 NATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFT 82 (524)
Q Consensus 3 ~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~ 82 (524)
.+..+|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||++++.. +||+|+++||+|+||++|+|+|+
T Consensus 56 ~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~PG~s~~Y~f~ 133 (587)
T TIGR01480 56 MVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIAPGETFTYRFP 133 (587)
T ss_pred EEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccCCCCeEEEEEE
Confidence 4678899999999999999999999999999999999999999999999998765 99999999999999999999999
Q ss_pred eCCcccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHh--------------
Q 009854 83 LAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALK-------------- 147 (524)
Q Consensus 83 ~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~-------------- 147 (524)
+ .++||||||||...+. .||+|+|||+++...++ .+|+|++|+++||++.+...++.....
T Consensus 134 ~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~ 209 (587)
T TIGR01480 134 V-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVAD 209 (587)
T ss_pred C-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhh
Confidence 9 7899999999998877 89999999998755433 468999999999997766554332210
Q ss_pred -------cCCC---------------C-----C--CCceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCe
Q 009854 148 -------SGLA---------------P-----N--VSDAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEE 198 (524)
Q Consensus 148 -------~g~~---------------~-----~--~~~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~ 198 (524)
.|.. + . ....+++||+.. ...+++.+++|++|||||||+|+.+.
T Consensus 210 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvRLR~INas~~~~ 282 (587)
T TIGR01480 210 FFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVRLRFINGSAMTY 282 (587)
T ss_pred hhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEEEEEEecCCCce
Confidence 1100 0 0 012378898863 12356899999999999999999999
Q ss_pred EEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCC
Q 009854 199 LFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLG 278 (524)
Q Consensus 199 ~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~ 278 (524)
+.|+|+||+|+||++||.+++|+.++++.|++||||||+|++++ .|.|.|.+..... .....++|++.....
T Consensus 283 f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~-------~~~~~~~l~~~~~~~ 354 (587)
T TIGR01480 283 FDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDR-------TGYARGTLAVRLGLT 354 (587)
T ss_pred EEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCC-------CceEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999875 4899999875322 235677888765422
Q ss_pred CCCCCCCCCC--CCCCccc-c---------ccc------------------c----------------------------
Q 009854 279 STATTLTVPP--PRNATPV-A---------ANF------------------T---------------------------- 300 (524)
Q Consensus 279 ~~~~~~~~~p--~~~~~~~-~---------~~~------------------~---------------------------- 300 (524)
...+.++..| ...+... . ..+ .
T Consensus 355 ~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (587)
T TIGR01480 355 APVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDM 434 (587)
T ss_pred CCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccC
Confidence 2222221111 0101000 0 000 0
Q ss_pred -------------------ccccccCCCCCCCCCCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhh
Q 009854 301 -------------------ASLRSLNSKKYPARVPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQ 361 (524)
Q Consensus 301 -------------------~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~ 361 (524)
.....|.. ..+...+...++++.+.+.- +-.++.|+|||+.|.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~p~r~~~~~L~g---------~m~~~~wtiNG~~~~-------- 496 (587)
T TIGR01480 435 PMDRMDDPGIGLRDNGRRVLTYADLHS-LFPPPDGRAPGREIELHLTG---------NMERFAWSFDGEAFG-------- 496 (587)
T ss_pred cccccCCCCcccccCCcceeehhhccc-cccccCcCCCCceEEEEEcC---------CCceeEEEECCccCC--------
Confidence 00000000 00000001223333222211 112445666665541
Q ss_pred hhhccccccccCCCCCCCCccccCCCCCCCCcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecC
Q 009854 362 AHFFKIGGVFTDDFPGNPPVTYNFTGTQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGL 441 (524)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~ 441 (524)
....+.++.|++|+|.|.|.. .+.|||||||+.|+++..+
T Consensus 497 ------------------------------------~~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~- 536 (587)
T TIGR01480 497 ------------------------------------LKTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ- 536 (587)
T ss_pred ------------------------------------CCCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-
Confidence 112356889999999999965 6799999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEc
Q 009854 442 GNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 442 g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
|. .+.+|||+.|+||+++.++|.+++||.|+||||++.|++.|||..|.|.
T Consensus 537 G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 537 GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 21 1347899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.5e-75 Score=607.08 Aligned_cols=408 Identities=21% Similarity=0.286 Sum_probs=286.2
Q ss_pred CccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcc
Q 009854 8 CSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQR 87 (524)
Q Consensus 8 g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~ 87 (524)
|....+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+. +||+| ||+|.||++++|+|++++++
T Consensus 62 ~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~I~PG~s~~Y~f~~~q~a 136 (523)
T PRK10965 62 KTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGIIAPGGKRTVTFTVDQPA 136 (523)
T ss_pred CceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCCCCCCCEEEEEeccCCCC
Confidence 34457999999999999999999999999999999999999999999876 99986 89999999999999996679
Q ss_pred cceeeccChH----HHH-hhceeeEEEcCCCCCCCCCCC--CCccEEEEeceeecccHHHHHHHHH-hcCCCCCCCceEE
Q 009854 88 GTLWWHAHIL----WLR-ATVHGAIVILPKRGVPYPFPK--PHKEVTVILSEWWKSDVEAVINEAL-KSGLAPNVSDAHT 159 (524)
Q Consensus 88 Gt~wyH~H~~----~~~-~Gl~G~~iV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 159 (524)
||||||+|.+ .|. +||+|+|||+++.+...+++. ...|++|+++||+.+....+..... .....+..++.++
T Consensus 137 GT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~l 216 (523)
T PRK10965 137 ATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLL 216 (523)
T ss_pred ceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEE
Confidence 9999999974 344 899999999998765444443 3469999999998865543211110 0111234678999
Q ss_pred EcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEE-cCceeeEEEecCccc-ceeEecEEEeCCCceEEEE
Q 009854 160 INGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKI-AGHKLTVVEVDAAYV-KPFKTETVLIAPGQTTNVL 237 (524)
Q Consensus 160 iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~P~~~d~v~l~pgeR~dv~ 237 (524)
|||+.+ |.++++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++ +|+.+++|.|+|||||||+
T Consensus 217 VNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 217 TNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred ECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEE
Confidence 999987 567775 579999999999999999998 799999999999987 8999999999999999999
Q ss_pred EEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCC
Q 009854 238 LSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPARVPL 317 (524)
Q Consensus 238 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~ 317 (524)
|++++ .++|.+.+..+...............++++..........+|. .+..+... +. ...
T Consensus 286 v~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~---------------~l~~~~~~--~~-~~~ 346 (523)
T PRK10965 286 VDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPD---------------SLASLPAL--PS-LEG 346 (523)
T ss_pred EEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCCh---------------hhccCCCC--Cc-ccc
Confidence 99987 4789988764422110000011134556665432211111111 01111000 00 000
Q ss_pred CcceEEEEEeccCcc---------CCc--------------cc--------cCC----ce---E--EEEecCeeeecCcc
Q 009854 318 KIDHSLFFTIGLGIN---------PCA--------------TC--------VNG----SR---V--VADINNVTFVMPTI 357 (524)
Q Consensus 318 ~~~~~~~~~~~~~~~---------~~~--------------~~--------~~~----~~---~--~~~in~~~~~~p~~ 357 (524)
...+++.+.+..... ... +. ..+ .+ + .|+|||++|..
T Consensus 347 ~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~--- 423 (523)
T PRK10965 347 LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM--- 423 (523)
T ss_pred cceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC---
Confidence 112333332210000 000 00 000 00 0 12455544421
Q ss_pred hhhhhhhccccccccCCCCCCCCccccCCCCCCCCcccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEE
Q 009854 358 SLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQPANFQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEV 437 (524)
Q Consensus 358 ~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl 437 (524)
....+.++.|++++|.|.|.+ ..+.|||||||++|+||
T Consensus 424 ----------------------------------------~~~~~~~~~G~~e~w~i~N~~--~~~~Hp~HlHg~~F~Vl 461 (523)
T PRK10965 424 ----------------------------------------NKPMFAAKKGQYERWVISGVG--DMMLHPFHIHGTQFRIL 461 (523)
T ss_pred ----------------------------------------CCcceecCCCCEEEEEEEeCC--CCCccCeEEeCcEEEEE
Confidence 123357889999999999965 23589999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe----CCceeEEEEeechHhhhccceEEEEEc
Q 009854 438 GRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA----DNPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 438 ~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a----dnpG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
+++... .....+.|||||.|++ +.+.|++++ +++|.||||||||+|||.|||.+|.|.
T Consensus 462 ~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 462 SENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 996321 1223468999999988 666665555 467799999999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=5.8e-74 Score=592.12 Aligned_cols=389 Identities=17% Similarity=0.197 Sum_probs=281.6
Q ss_pred CccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcc
Q 009854 8 CSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQR 87 (524)
Q Consensus 8 g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~ 87 (524)
|..+.+|+|||++|||+||+++||+|+|+|+|.|+++|++||||++++.. .+||++ ++|.||++|+|+|++++++
T Consensus 62 g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~a 136 (471)
T PRK10883 62 GTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQNA 136 (471)
T ss_pred CceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCCc
Confidence 66789999999999999999999999999999999999999999999876 366654 6799999999999986779
Q ss_pred cceeeccChHH----HH-hhceeeEEEcCCCCCCCCCCC--CCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEE
Q 009854 88 GTLWWHAHILW----LR-ATVHGAIVILPKRGVPYPFPK--PHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTI 160 (524)
Q Consensus 88 Gt~wyH~H~~~----~~-~Gl~G~~iV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~i 160 (524)
||||||+|.++ |. +||+|+|||+++.+...+++. ...|++|+++||..+....... .........++.++|
T Consensus 137 GT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~--~~~~~~g~~gd~~lv 214 (471)
T PRK10883 137 ATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY--NEPGSGGFVGDTLLV 214 (471)
T ss_pred eeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc--cccccCCccCCeeEE
Confidence 99999999765 33 899999999998765444443 3449999999998765443211 011222356789999
Q ss_pred cCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEE-cCceeeEEEecCccc-ceeEecEEEeCCCceEEEEE
Q 009854 161 NGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKI-AGHKLTVVEVDAAYV-KPFKTETVLIAPGQTTNVLL 238 (524)
Q Consensus 161 NG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~P~~~d~v~l~pgeR~dv~v 238 (524)
||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||.||+++ +|+.++++.|+|||||||+|
T Consensus 215 NG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 215 NGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred CCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 99987 67999875 7999999999999999999 899999999998776 89999999999999999999
Q ss_pred EeCCCCCceEEEEeeCCCCC--c-cccCCC---CeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCC
Q 009854 239 SAAHATGKYLVAASPFLDTP--A-ILVDNK---TATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYP 312 (524)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~--~-~~~~~~---~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p 312 (524)
++++ .+.+.+++....... . ..+... ....+++.......... ...+| ..+.. ..
T Consensus 284 d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p------------~~l~~---~~-- 344 (471)
T PRK10883 284 DMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLV-TDNLP------------MRLLP---DE-- 344 (471)
T ss_pred ECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccCC-CCcCC------------hhhcC---CC--
Confidence 9986 356766653211000 0 000000 01122333221100000 00000 00110 00
Q ss_pred CCCCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCCCccccCCCCCCCC
Q 009854 313 ARVPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQPAN 392 (524)
Q Consensus 313 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 392 (524)
..+....+++.+.++.. .|.|||++|....
T Consensus 345 -~~~~~~~~~~~~~l~~~-------------~~~INg~~~~~~~------------------------------------ 374 (471)
T PRK10883 345 -IMEGSPIRSREISLGDD-------------LPGINGALWDMNR------------------------------------ 374 (471)
T ss_pred -CCCCCCcceEEEEecCC-------------cCccCCcccCCCc------------------------------------
Confidence 01112233333333211 1568888773321
Q ss_pred cccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEE
Q 009854 393 FQTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWT 472 (524)
Q Consensus 393 ~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v 472 (524)
..+.+++|++++|.+.| .+.|||||||+.|||++++.... ...+..|||||.|+ +.+
T Consensus 375 -------~~~~~~~g~~e~W~~~n-----~~~HP~HlHg~~FqVl~~~G~~~---------~~~~~gwkDTV~v~--~~v 431 (471)
T PRK10883 375 -------IDVTAQQGTWERWTVRA-----DMPQAFHIEGVMFLIRNVNGAMP---------FPEDRGWKDTVWVD--GQV 431 (471)
T ss_pred -------ceeecCCCCEEEEEEEC-----CCCcCEeECCccEEEEEecCCCC---------CccccCcCcEEEcC--CeE
Confidence 12467899999999988 35899999999999999953211 11234799999996 469
Q ss_pred EEEEEeCCce----eEEEEeechHhhhccceEEEEEcC
Q 009854 473 AIRFRADNPG----VWFMHCHLEVHTTWGLKMAFIVDN 506 (524)
Q Consensus 473 ~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 506 (524)
.|+++++++| .||||||||+|||.|||.+|+|.+
T Consensus 432 ~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 432 ELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred EEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 9999999887 899999999999999999999964
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-59 Score=488.29 Aligned_cols=399 Identities=26% Similarity=0.364 Sum_probs=286.5
Q ss_pred CCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCc
Q 009854 7 LCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQ 86 (524)
Q Consensus 7 ~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~ 86 (524)
.++....|++||++|||+||+++||+|+|+++|++.+.|++||||+.++.. +||++..+|+++.||++++|.|.. +.
T Consensus 48 ~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~-~~ 124 (451)
T COG2132 48 PGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ-DV 124 (451)
T ss_pred cCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC-CC
Confidence 466778999999999999999999999999999998889999999888855 999999999999999999999998 66
Q ss_pred ccceeeccChHHHH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEEcCCCC
Q 009854 87 RGTLWWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTINGHPG 165 (524)
Q Consensus 87 ~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~ 165 (524)
+||||||+|.++|. +||+|++||++....+. ..|.+..++..+|+.......... ........++..+|||+.+
T Consensus 125 ~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~~ 199 (451)
T COG2132 125 PGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAIL 199 (451)
T ss_pred CcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCcc
Confidence 77999999999987 99999999999976554 447777777778876555443332 1222345578999999775
Q ss_pred CCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCC
Q 009854 166 PLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATG 245 (524)
Q Consensus 166 ~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g 245 (524)
+.+.++. ++|||||+|+++.+.+.+++.+++|+||++||.+++|..+|.+.|+||||+||++++.+ .+
T Consensus 200 ----------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~ 267 (451)
T COG2132 200 ----------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GG 267 (451)
T ss_pred ----------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CC
Confidence 4445555 56999999999888888999999999999999999889999999999999999999997 47
Q ss_pred ceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCC--CCCCccccccccccccccCCCCCCCCCCC-CcceE
Q 009854 246 KYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPP--PRNATPVAANFTASLRSLNSKKYPARVPL-KIDHS 322 (524)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~l~~l~~~~~p~~~p~-~~~~~ 322 (524)
.+.+.+... +.. ....+..........+........ ...+. .. .....+....+. .+. ..+..
T Consensus 268 ~~~l~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~----~~~~~~~~~~~~--~~~~~~~~~ 333 (451)
T COG2132 268 AVTLTALGE-DMP------DTLKGFRAPNPILTPSYPVLNGRVGAPTGDM-AD----HAPVGLLVTILV--EPGPNRDTD 333 (451)
T ss_pred eEEEEeccc-cCC------ceeeeeeccccccccccccccccccCCCcch-hh----ccccccchhhcC--CCccccccc
Confidence 888888651 111 011112111110100000000000 00000 00 000000000000 000 00000
Q ss_pred EEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCCCccccCCCCCCCCcccCCCceEE
Q 009854 323 LFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQPANFQTNNGTRIY 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
..+.. .-....|.+|++.|.. ....+
T Consensus 334 ~~l~~-----------~~~~~~~~~n~~~~~~-------------------------------------------~~~~~ 359 (451)
T COG2132 334 FHLIG-----------GIGGYVWAINGKAFDD-------------------------------------------NRVTL 359 (451)
T ss_pred chhhc-----------ccccccccccCccCCC-------------------------------------------CcCce
Confidence 00000 0011234455444311 12356
Q ss_pred EccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeCCce
Q 009854 403 RLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRADNPG 482 (524)
Q Consensus 403 ~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG 482 (524)
.++.|++++|+|.|.. .+.||||+||+.|+|++.+ .......+.||||+.+.+++.++|+|.+++||
T Consensus 360 ~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g 426 (451)
T COG2132 360 IAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAPGERLLVRFDADYPG 426 (451)
T ss_pred eecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEEeCCCeEEEEEEeCCCCC
Confidence 7889999999999965 5899999999999999986 12233567899999999999999999999999
Q ss_pred eEEEEeechHhhhccceEEEEEcC
Q 009854 483 VWFMHCHLEVHTTWGLKMAFIVDN 506 (524)
Q Consensus 483 ~w~~HCHil~H~d~GM~~~~~V~~ 506 (524)
.|+||||+++|++.|||..+.|..
T Consensus 427 ~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 427 PWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred ceEEeccchhHhhcCCeeEEEecC
Confidence 999999999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=4.3e-46 Score=365.12 Aligned_cols=247 Identities=22% Similarity=0.313 Sum_probs=201.6
Q ss_pred CCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC--CCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEe
Q 009854 6 RLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK--YNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTL 83 (524)
Q Consensus 6 ~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~--~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~ 83 (524)
.+|+.+.+|+|||++|||+||+++||+|+|+|+|.+. .++++||||.. ++||++.++| |.||++++|+|++
T Consensus 42 ~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~ 114 (311)
T TIGR02376 42 DDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKA 114 (311)
T ss_pred CCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEc
Confidence 4799999999999999999999999999999999985 58999999963 3788887777 9999999999998
Q ss_pred CCcccceeeccChHH----HH-hhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHH---HHHHHhcCCCCCCC
Q 009854 84 AGQRGTLWWHAHILW----LR-ATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAV---INEALKSGLAPNVS 155 (524)
Q Consensus 84 ~~~~Gt~wyH~H~~~----~~-~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~---~~~~~~~g~~~~~~ 155 (524)
+++||||||||.++ +. +||+|+|||++++.. +..|+|++|+++||+++..... +...... .....+
T Consensus 115 -~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~ 188 (311)
T TIGR02376 115 -TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDEGEGGAYEDDVAA-MRTLTP 188 (311)
T ss_pred -CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccccccccccchHHH-HhcCCC
Confidence 78999999999643 44 899999999987532 2568999999999988654321 1000000 011345
Q ss_pred ceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccccee--EecEEEeCCCce
Q 009854 156 DAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPF--KTETVLIAPGQT 233 (524)
Q Consensus 156 ~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~--~~d~v~l~pgeR 233 (524)
+.++|||+.+++ .+.+++++|+++||||+|++..+.+.||++|+.+++|+.||.++.+. .++++.|+||||
T Consensus 189 ~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R 261 (311)
T TIGR02376 189 THVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSA 261 (311)
T ss_pred CEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCce
Confidence 899999997532 14579999999999999999889999999999999999999999653 489999999999
Q ss_pred EEEEEEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCC
Q 009854 234 TNVLLSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLG 278 (524)
Q Consensus 234 ~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~ 278 (524)
+||+|++++ ||.|+++++.+.... +....++++|++...
T Consensus 262 ~dv~v~~~~-pG~y~~~~~~~~~~~-----~~g~~~~i~~~g~~~ 300 (311)
T TIGR02376 262 AAALYTFEQ-PGVYAYVDHNLIEAF-----EKGAAAQVKVEGAWN 300 (311)
T ss_pred EEEEEEeCC-CeEEEEECcHHHHHH-----hCCCEEEEEECCCCC
Confidence 999999997 799999998654321 235789999987543
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=3.4e-35 Score=245.62 Aligned_cols=111 Identities=42% Similarity=0.779 Sum_probs=104.1
Q ss_pred ccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEE
Q 009854 3 NATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFT 82 (524)
Q Consensus 3 ~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~ 82 (524)
.+.++|..+++|+|||++|||+||+++||+|+|+|+|.+.++++|||||++++..+|+||+++++||+|.||++++|+|+
T Consensus 6 ~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~ 85 (117)
T PF07732_consen 6 TVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFT 85 (117)
T ss_dssp EEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEE
T ss_pred EEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEe
Confidence 56788888999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred eCCcccceeeccChHHHH-hhceeeEEEcCCC
Q 009854 83 LAGQRGTLWWHAHILWLR-ATVHGAIVILPKR 113 (524)
Q Consensus 83 ~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~ 113 (524)
+++++||||||||.+++. +||+|+|||++++
T Consensus 86 ~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 86 ANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp ESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 965699999999999875 9999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=5.8e-30 Score=223.61 Aligned_cols=107 Identities=42% Similarity=0.823 Sum_probs=94.9
Q ss_pred CCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEE
Q 009854 396 NNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIR 475 (524)
Q Consensus 396 ~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~ir 475 (524)
..+..++.++.|+++||+|+|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45678999999999999999965 66999999999999999987765433 345678899999999999999999999
Q ss_pred EEeCCceeEEEEeechHhhhccceEEEEEcC
Q 009854 476 FRADNPGVWFMHCHLEVHTTWGLKMAFIVDN 506 (524)
Q Consensus 476 f~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 506 (524)
|+++|||.|+|||||++|+|.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999875
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=6.3e-27 Score=208.62 Aligned_cols=150 Identities=33% Similarity=0.578 Sum_probs=121.9
Q ss_pred ccEEEEeceeecccHHHHHHHHHhcCC----CCCCCceEEEcCCCCCCCCCC-----CCCceeEEEecCCEEEEEEEecC
Q 009854 124 KEVTVILSEWWKSDVEAVINEALKSGL----APNVSDAHTINGHPGPLSSCP-----SQGGFKLPVESGKTYMLRLINAA 194 (524)
Q Consensus 124 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~iNG~~~~~~~~~-----~~~~p~~~v~~G~~~rlRliN~~ 194 (524)
+|++|+++||+++............+. .+..++.++|||+.+ +.|+ ....+.+++++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 478999999999888776665444322 266789999999976 4554 24568999999999999999999
Q ss_pred CCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEc
Q 009854 195 LNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYS 274 (524)
Q Consensus 195 ~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~ 274 (524)
+.+.+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++++|+|+|++....... .........|+|+|.
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~-~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSI-NDPQNGNALAILRYD 157 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSS-HSHGGGTTEEEEEET
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCC-ccCCCcEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999987899999996322211 223456789999998
Q ss_pred CC
Q 009854 275 GT 276 (524)
Q Consensus 275 ~~ 276 (524)
++
T Consensus 158 ~~ 159 (159)
T PF00394_consen 158 GA 159 (159)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.74 E-value=8.7e-16 Score=151.11 Aligned_cols=248 Identities=17% Similarity=0.145 Sum_probs=152.9
Q ss_pred ceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCC-CCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceE
Q 009854 156 DAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAAL-NEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTT 234 (524)
Q Consensus 156 ~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~-~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~ 234 (524)
+.+++||+. ..|.+++++|++++++|.|... ...|.+|+|++. +.||.. ....+.||+++
T Consensus 48 ~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~------~~~~I~PG~t~ 108 (311)
T TIGR02376 48 QAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGA------ALTQVNPGETA 108 (311)
T ss_pred EEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCC------cceeECCCCeE
Confidence 679999985 2389999999999999999863 257899999874 457652 12348999999
Q ss_pred EEEEEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCC
Q 009854 235 NVLLSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPAR 314 (524)
Q Consensus 235 dv~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~ 314 (524)
.+.|.+++ +|.||+|||...... ... .....+.|....... .+..+. ++.--+++.....
T Consensus 109 ty~F~~~~-~Gty~YH~H~~~~~~-~q~-~~Gl~G~liV~~~~~--------~~~~d~-----e~~l~l~d~~~~~---- 168 (311)
T TIGR02376 109 TLRFKATR-PGAFVYHCAPPGMVP-WHV-VSGMNGAIMVLPREG--------LPEYDK-----EYYIGESDLYTPK---- 168 (311)
T ss_pred EEEEEcCC-CEEEEEEcCCCCchh-HHh-hcCcceEEEeeccCC--------CcCcce-----eEEEeeeeEeccc----
Confidence 99999986 799999999532100 000 112344444443211 000000 0000001100000
Q ss_pred CCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCCCccccCCCCCCCCcc
Q 009854 315 VPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQPANFQ 394 (524)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 394 (524)
.............. ...+..-...+||+....
T Consensus 169 -~~~~~~~~~~~~~~-------~~~~~~~~~~iNG~~~~~---------------------------------------- 200 (311)
T TIGR02376 169 -DEGEGGAYEDDVAA-------MRTLTPTHVVFNGAVGAL---------------------------------------- 200 (311)
T ss_pred -cccccccccchHHH-------HhcCCCCEEEECCccCCC----------------------------------------
Confidence 00000000000000 000000113345432100
Q ss_pred cCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCC-C-cCceeEecCCcEE
Q 009854 395 TNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDP-V-ERNTIGVPSGGWT 472 (524)
Q Consensus 395 ~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p-~-~rDTv~vpp~g~v 472 (524)
.....++.|++++|.|.|.+ ....+.||++|++|.++... |.+ ..+ . ..|++.|.||+..
T Consensus 201 ----~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~D-G~~-----------~~~~~~~~~~~~i~PG~R~ 262 (311)
T TIGR02376 201 ----TGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVT-GKF-----------ANPPNRDVETWFIPGGSAA 262 (311)
T ss_pred ----CCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEEC-Ccc-----------cCCCCCCcceEEECCCceE
Confidence 01236778999999999975 34678999999999999884 321 122 2 3689999999999
Q ss_pred EEEEEeCCceeEEEEeechHhh-hccceEEEEEcCCC
Q 009854 473 AIRFRADNPGVWFMHCHLEVHT-TWGLKMAFIVDNGK 508 (524)
Q Consensus 473 ~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~~~ 508 (524)
.|.++++.||.|++|||...|+ ..||++.+.|+...
T Consensus 263 dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 263 AALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred EEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 9999999999999999999998 77999999987544
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.73 E-value=1.2e-16 Score=168.72 Aligned_cols=226 Identities=13% Similarity=0.138 Sum_probs=146.5
Q ss_pred EEEcCcCCC--cEEEEecCCEEEEEEEeCCCC-CceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeCCc
Q 009854 14 VTVNGYFPG--PTIVAREDDTVLVKVVNHVKY-NVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLAGQ 86 (524)
Q Consensus 14 ~~~NG~~pg--P~i~~~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~ 86 (524)
+++||+.+. +++.+++|+++|+||+|.... ...+++.|+...... .||.+. +....|.||||++..+++ ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 789999763 579999999999999999854 467888888755443 788553 345678999999999997 46
Q ss_pred ccceeeccChHHHHhhceeeEEEcCCC-CCCC-CCCCC----CccEEE------------Eec-----ee----------
Q 009854 87 RGTLWWHAHILWLRATVHGAIVILPKR-GVPY-PFPKP----HKEVTV------------ILS-----EW---------- 133 (524)
Q Consensus 87 ~Gt~wyH~H~~~~~~Gl~G~~iV~~~~-~~~~-~~~~~----~~e~~l------------~~~-----d~---------- 133 (524)
.|.|+..+...+. .|...+.+..... ..+. ++... -.+.-+ .+. +.
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 6899988754322 2333333332211 1100 11000 000000 000 00
Q ss_pred ec-----------------------------------------ccHHH-HHHHHHh---------cCC------CCCC-C
Q 009854 134 WK-----------------------------------------SDVEA-VINEALK---------SGL------APNV-S 155 (524)
Q Consensus 134 ~~-----------------------------------------~~~~~-~~~~~~~---------~g~------~~~~-~ 155 (524)
.+ ..... .+..... .+. .+.. .
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 00 00000 0000000 000 0011 1
Q ss_pred ceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEE
Q 009854 156 DAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTN 235 (524)
Q Consensus 156 ~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~d 235 (524)
..|+|||+.++ ..+.++++.||++||||+|.+ ...|++|+|||.|.++..||.+ +...|++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 24899999863 224689999999999999988 7899999999999999888863 2335899999999999
Q ss_pred EEEEeCCCCCceEEEEee
Q 009854 236 VLLSAAHATGKYLVAASP 253 (524)
Q Consensus 236 v~v~~~~~~g~~~~~~~~ 253 (524)
+.|++++ ||.|++|||.
T Consensus 556 ~~f~ad~-pG~w~~HCH~ 572 (587)
T TIGR01480 556 FRVTADA-LGRWAYHCHM 572 (587)
T ss_pred EEEECCC-CeEEEEcCCC
Confidence 9999997 6999999995
No 23
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.72 E-value=4.5e-17 Score=141.39 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=79.0
Q ss_pred CccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC---CCceEEecCccccCCCCCCCCCccccccCCCC----Cc--eE
Q 009854 8 CSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK---YNVSIHWHGVRQLRTCWADGPAYITQCPIQPG----QN--YI 78 (524)
Q Consensus 8 g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~---~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG----~~--~~ 78 (524)
+....-+.++| .++|+|++++||+|+|+|+|.+. ....||+||......+.+||++.++|+++.|+ +. .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 44445567788 55899999999999999999964 44667777776554444899999999998884 11 34
Q ss_pred EEEEeCCcccceeeccChHHHH-hhceeeEEEc
Q 009854 79 YNFTLAGQRGTLWWHAHILWLR-ATVHGAIVIL 110 (524)
Q Consensus 79 y~~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~ 110 (524)
++|+. .++||||||||..++. +||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 55655 5899999999998888 7999999995
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.58 E-value=5e-14 Score=147.76 Aligned_cols=237 Identities=13% Similarity=0.139 Sum_probs=145.3
Q ss_pred CccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC-CCceEEe-cCccccCCCCCCCCCc-----cccccCCCCCceEEE
Q 009854 8 CSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK-YNVSIHW-HGVRQLRTCWADGPAY-----ITQCPIQPGQNYIYN 80 (524)
Q Consensus 8 g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~~iH~-HG~~~~~~~~~DG~~~-----~~q~~i~PG~~~~y~ 80 (524)
|.....+++||+. .|.+.+. |.++|+||.|... ....+.+ .|....... .||.+. +....|.||||++..
T Consensus 209 g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 209 GWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred CccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEE
Confidence 5567789999997 5888885 6799999999975 3445666 454433222 788442 335668999999999
Q ss_pred EEeCCcccceeeccChHHHHhhc--------eeeEEEcC--CCC-CCCC-----CCC-------CCccEEEEeceeec--
Q 009854 81 FTLAGQRGTLWWHAHILWLRATV--------HGAIVILP--KRG-VPYP-----FPK-------PHKEVTVILSEWWK-- 135 (524)
Q Consensus 81 ~~~~~~~Gt~wyH~H~~~~~~Gl--------~G~~iV~~--~~~-~~~~-----~~~-------~~~e~~l~~~d~~~-- 135 (524)
++. .+.|.++...-.... .|+ +-.+.+.. ... ...| .+. ..+.+.+.+..+..
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 998 456766665421110 111 11122321 111 0000 000 01222332221100
Q ss_pred -------ccHHHHHHHH--------HhcC-------C----CC--CCCceEEEcCCCCCCCCCCCCCceeEEEecCCEEE
Q 009854 136 -------SDVEAVINEA--------LKSG-------L----AP--NVSDAHTINGHPGPLSSCPSQGGFKLPVESGKTYM 187 (524)
Q Consensus 136 -------~~~~~~~~~~--------~~~g-------~----~~--~~~~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~r 187 (524)
.........+ ...| + .. .....++|||+.+.. ..+.++++.|++++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~------~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM------NKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC------CCcceecCCCCEEE
Confidence 0000000000 0000 0 00 000124899998631 34668999999999
Q ss_pred EEEEecCCCCeEEEEEcCceeeEEEecCcccc---eeEecEEEeCCCceEEEEEEeCC---CCCceEEEEeeCCC
Q 009854 188 LRLINAALNEELFFKIAGHKLTVVEVDAAYVK---PFKTETVLIAPGQTTNVLLSAAH---ATGKYLVAASPFLD 256 (524)
Q Consensus 188 lRliN~~~~~~~~~~l~gh~~~via~DG~~~~---P~~~d~v~l~pgeR~dv~v~~~~---~~g~~~~~~~~~~~ 256 (524)
|+|+|.+....|+|||||++|+|++.||.+.. +.+.|||.+.+ ++++++++++. .+|.|++|||...-
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~H 511 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEH 511 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhh
Confidence 99999996678999999999999999998764 45789999977 88999999984 34799999997643
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.54 E-value=3.8e-13 Score=139.92 Aligned_cols=224 Identities=15% Similarity=0.143 Sum_probs=138.8
Q ss_pred CccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC-CCceEEe-cCccccCCCCCCCCCc-----cccccCCCCCceEEE
Q 009854 8 CSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK-YNVSIHW-HGVRQLRTCWADGPAY-----ITQCPIQPGQNYIYN 80 (524)
Q Consensus 8 g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~~iH~-HG~~~~~~~~~DG~~~-----~~q~~i~PG~~~~y~ 80 (524)
|.....+++||+. .|.|.|+.| ++|+||.|... ....+++ +|....... .||... +++..|.||||++..
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEE
Confidence 5667889999997 699999875 89999999985 4567887 565433322 786332 345678999999999
Q ss_pred EEeCCcccceeeccChHH-HHhhcee------------eEEEcCCCC---CCCCCCCCCccEEEEeceeecccHHHHHHH
Q 009854 81 FTLAGQRGTLWWHAHILW-LRATVHG------------AIVILPKRG---VPYPFPKPHKEVTVILSEWWKSDVEAVINE 144 (524)
Q Consensus 81 ~~~~~~~Gt~wyH~H~~~-~~~Gl~G------------~~iV~~~~~---~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 144 (524)
+++ .+.+.+.+++-... ....+.+ .+-++.... ...+.+.......+ ........ ..
T Consensus 283 Vd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~-----~~~~~~~~-~~ 355 (471)
T PRK10883 283 VDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDEI-----MEGSPIRS-RE 355 (471)
T ss_pred EEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCCC-----CCCCCcce-EE
Confidence 998 55566666652110 0011111 011111110 00001100000000 00000000 00
Q ss_pred HHhcCCCCCCCceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccce---e
Q 009854 145 ALKSGLAPNVSDAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKP---F 221 (524)
Q Consensus 145 ~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P---~ 221 (524)
...+ ++.++|||+.+.. ..+.++++.|++++|+|.|. ..|+||||+|.|+|++.||....| -
T Consensus 356 -~~l~-----~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 356 -ISLG-----DDLPGINGALWDM------NRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred -EEec-----CCcCccCCcccCC------CcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccC
Confidence 0000 1224699998631 22457899999999999886 379999999999999999986543 4
Q ss_pred EecEEEeCCCceEEEEEEeCCCCC---ceEEEEeeCCCCC
Q 009854 222 KTETVLIAPGQTTNVLLSAAHATG---KYLVAASPFLDTP 258 (524)
Q Consensus 222 ~~d~v~l~pgeR~dv~v~~~~~~g---~~~~~~~~~~~~~ 258 (524)
+.|||.+. +++.++++++...| .|++|||..+-.+
T Consensus 421 wkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD 458 (471)
T PRK10883 421 WKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMAD 458 (471)
T ss_pred cCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccc
Confidence 57999994 57999999997544 7999999865444
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.51 E-value=1.8e-12 Score=137.66 Aligned_cols=240 Identities=15% Similarity=0.154 Sum_probs=145.7
Q ss_pred cEEEEcCcCC---------CcEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----cccccCCCCCce
Q 009854 12 PIVTVNGYFP---------GPTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNY 77 (524)
Q Consensus 12 ~~~~~NG~~p---------gP~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~ 77 (524)
..+++||+.- -++|.|++|+++|+||+|... ....+|.+|....... .||++. +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 5689999841 148999999999999999974 4567888888765543 799643 335668999999
Q ss_pred EEEEEeCCcccceeeccChHHH-----H-hhceeeEEEcCCCCCCCCC----CCCCc-----c----E-EEEeceeec--
Q 009854 78 IYNFTLAGQRGTLWWHAHILWL-----R-ATVHGAIVILPKRGVPYPF----PKPHK-----E----V-TVILSEWWK-- 135 (524)
Q Consensus 78 ~y~~~~~~~~Gt~wyH~H~~~~-----~-~Gl~G~~iV~~~~~~~~~~----~~~~~-----e----~-~l~~~d~~~-- 135 (524)
+..+++++.+|.||.+.+.... . ..-.+.|...+......+. +..+. + . .+....+-.
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999996668999999874211 1 1112333332222111110 00000 0 0 000000000
Q ss_pred -ccHHH----HHHHHHhcCC-----CC-CCCceEEEcCCCCCC---------------------------CCC-CCC---
Q 009854 136 -SDVEA----VINEALKSGL-----AP-NVSDAHTINGHPGPL---------------------------SSC-PSQ--- 173 (524)
Q Consensus 136 -~~~~~----~~~~~~~~g~-----~~-~~~~~~~iNG~~~~~---------------------------~~~-~~~--- 173 (524)
..... .+........ .. ...-.+.+||+.+.. .-| +..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000000 00 001235778875310 001 000
Q ss_pred -------CceeEEEecCCEEEEEEEecCC--CCeEEEEEcCceeeEEEec-Ccc-----------cceeEecEEEeCCCc
Q 009854 174 -------GGFKLPVESGKTYMLRLINAAL--NEELFFKIAGHKLTVVEVD-AAY-----------VKPFKTETVLIAPGQ 232 (524)
Q Consensus 174 -------~~p~~~v~~G~~~rlRliN~~~--~~~~~~~l~gh~~~via~D-G~~-----------~~P~~~d~v~l~pge 232 (524)
....+.++.|++++|.|.|.+. ...|+||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788999999999999862 3489999999999999986 321 137778999999999
Q ss_pred eEEEEEEeCCCCCceEEEEee
Q 009854 233 TTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 233 R~dv~v~~~~~~g~~~~~~~~ 253 (524)
-+-+.|++++ ||.|.+|||.
T Consensus 486 ~vvirf~adN-PG~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADN-PGVWFMHCHL 505 (539)
T ss_pred eEEEEEecCC-CeEEEEEecc
Confidence 9999999998 7999999995
No 27
>PLN02835 oxidoreductase
Probab=99.50 E-value=9.2e-13 Score=138.81 Aligned_cols=240 Identities=15% Similarity=0.111 Sum_probs=149.3
Q ss_pred ccEEEEcCcCCCcEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeCC
Q 009854 11 KPIVTVNGYFPGPTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLAG 85 (524)
Q Consensus 11 ~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~ 85 (524)
...+++||+.. +++.+++|+++|+||.|... ....+|+.|....... .||.+. +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 46799999974 89999999999999999985 4678899998866543 899643 33456899999999999966
Q ss_pred cccceeeccChHHHH--hhceeeEEEcCCCC-CCCCCCC---CCc--------cEEEEeceeecccH---HHHHHHHH-h
Q 009854 86 QRGTLWWHAHILWLR--ATVHGAIVILPKRG-VPYPFPK---PHK--------EVTVILSEWWKSDV---EAVINEAL-K 147 (524)
Q Consensus 86 ~~Gt~wyH~H~~~~~--~Gl~G~~iV~~~~~-~~~~~~~---~~~--------e~~l~~~d~~~~~~---~~~~~~~~-~ 147 (524)
.+|.||...-..... ....+.+--+.... ...+.+. .+. .....+........ ........ .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 689999986321111 11122222222111 0001110 000 00000110000000 00000000 0
Q ss_pred -----cCCCCC--CCceEEEcCCCCCCC---------------CCCC------------CCceeEEEecCCEEEEEEEec
Q 009854 148 -----SGLAPN--VSDAHTINGHPGPLS---------------SCPS------------QGGFKLPVESGKTYMLRLINA 193 (524)
Q Consensus 148 -----~g~~~~--~~~~~~iNG~~~~~~---------------~~~~------------~~~p~~~v~~G~~~rlRliN~ 193 (524)
...... ....|.+||..+... -|.. ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000000 013577888876310 0100 012345778899999999998
Q ss_pred CCCCeEEEEEcCceeeEEEe-cCcc----------cceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeC
Q 009854 194 ALNEELFFKIAGHKLTVVEV-DAAY----------VKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPF 254 (524)
Q Consensus 194 ~~~~~~~~~l~gh~~~via~-DG~~----------~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~ 254 (524)
+ ...|+||||||.|+|++. +|.+ ..|...||+.+.+++..-+.|++++ ||.|.+|||..
T Consensus 429 ~-~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG~Wl~HCHi~ 498 (539)
T PLN02835 429 E-KTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QGMWNMRSAIW 498 (539)
T ss_pred C-CCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CEEeeeeecch
Confidence 7 568999999999999987 5522 2388999999999999999999998 69999999963
No 28
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=1.5e-11 Score=128.55 Aligned_cols=234 Identities=19% Similarity=0.142 Sum_probs=150.1
Q ss_pred CCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCC----ccccccCCCCCceEEEE
Q 009854 7 LCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHV-KYNVSIHWHGVRQLRTCWADGPA----YITQCPIQPGQNYIYNF 81 (524)
Q Consensus 7 ~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~~q~~i~PG~~~~y~~ 81 (524)
.|..+....+||+.. |.+ +.++..+|+||.|.. .....+++.|.+..... .||.+ .+.+..+.|||+++...
T Consensus 185 ~~~~g~~~~vnG~~~-p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v 261 (451)
T COG2132 185 GGFPGDTLLVNGAIL-PFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLV 261 (451)
T ss_pred cCCCCCeEEECCCcc-cee-ecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEE
Confidence 577888899999652 555 445555999999998 66677777766654433 67755 45677899999999999
Q ss_pred EeCCcccceeeccChHHHHhhceeeEEEcCCCCCCCC-------CCCCC---ccEEEEeceeecccHHHHHHHHHhcCCC
Q 009854 82 TLAGQRGTLWWHAHILWLRATVHGAIVILPKRGVPYP-------FPKPH---KEVTVILSEWWKSDVEAVINEALKSGLA 151 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~~~~~Gl~G~~iV~~~~~~~~~-------~~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~ 151 (524)
+. ...|++-+.+.......-+.+..-.........+ .+..+ ......................... .
T Consensus 262 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 338 (451)
T COG2132 262 DM-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--G 338 (451)
T ss_pred Ec-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--c
Confidence 88 4478888888762211222222211111100000 00111 1111111111111110000000000 0
Q ss_pred CCCCceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccc---ceeEecEEEe
Q 009854 152 PNVSDAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV---KPFKTETVLI 228 (524)
Q Consensus 152 ~~~~~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~---~P~~~d~v~l 228 (524)
......+.+||+.++. ....+.++.|+++||+|.|-+. ..|+|||||+.|.|++.| ... .+...|++.+
T Consensus 339 ~~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v 410 (451)
T COG2132 339 GIGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLV 410 (451)
T ss_pred ccccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEe
Confidence 1122568888887632 2467899999999999999995 999999999999999999 322 3578999999
Q ss_pred CCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 229 APGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 229 ~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
.|++++.+.++++. +|.|+++||...
T Consensus 411 ~~~~~~~v~~~a~~-~g~~~~HCH~l~ 436 (451)
T COG2132 411 APGERLLVRFDADY-PGPWMFHCHILE 436 (451)
T ss_pred CCCeEEEEEEeCCC-CCceEEeccchh
Confidence 99999999999998 589999999753
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.28 E-value=2.1e-10 Score=122.00 Aligned_cols=228 Identities=15% Similarity=0.123 Sum_probs=135.3
Q ss_pred EEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeCCcc-cceeeccChH
Q 009854 24 TIVAREDDTVLVKVVNHV-KYNVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLAGQR-GTLWWHAHIL 97 (524)
Q Consensus 24 ~i~~~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~~-Gt~wyH~H~~ 97 (524)
+|.|++|+++|+||+|.. .....++++|....... .||.+. +....|.||||++..+++++.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999987 45667788887765443 788543 3356689999999999985444 5899986543
Q ss_pred HHH--hhceeeEEEcCCCCC-CCC-C-----CCCCc-----cEEEE-eceeecc-cHHHHHHH-H-HhcCCCCCCCceEE
Q 009854 98 WLR--ATVHGAIVILPKRGV-PYP-F-----PKPHK-----EVTVI-LSEWWKS-DVEAVINE-A-LKSGLAPNVSDAHT 159 (524)
Q Consensus 98 ~~~--~Gl~G~~iV~~~~~~-~~~-~-----~~~~~-----e~~l~-~~d~~~~-~~~~~~~~-~-~~~g~~~~~~~~~~ 159 (524)
... .....+++....... ..+ . +..+. +..+. +...... ........ . ...+........++
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 321 111124444322111 000 0 00000 00000 0000000 00000000 0 00000000012367
Q ss_pred EcCCCCCC-------------------------CCCC-------C-----CCceeEEEecCCEEEEEEEecCC-----CC
Q 009854 160 INGHPGPL-------------------------SSCP-------S-----QGGFKLPVESGKTYMLRLINAAL-----NE 197 (524)
Q Consensus 160 iNG~~~~~-------------------------~~~~-------~-----~~~p~~~v~~G~~~rlRliN~~~-----~~ 197 (524)
+||..+.. +.|. . ...-.+.++.|++|.|.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 78776520 0000 0 01134788999999999999752 45
Q ss_pred eEEEEEcCceeeEEEec-Ccc-----------cceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 198 ELFFKIAGHKLTVVEVD-AAY-----------VKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 198 ~~~~~l~gh~~~via~D-G~~-----------~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
.|+||||||.|+|++.. |.+ ..|...||+.+.++.-+-+.|++++ ||-|.+|||.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG~W~~HCHi 509 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PGVWAFHCHI 509 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-CeEeeeeccc
Confidence 79999999999999987 332 1377889999999999999999998 6999999995
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.27 E-value=2e-10 Score=120.87 Aligned_cols=240 Identities=16% Similarity=0.141 Sum_probs=145.6
Q ss_pred ccEEEEcCcCC-CcEEEEecCCEEEEEEEeCCCC-CceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeC
Q 009854 11 KPIVTVNGYFP-GPTIVAREDDTVLVKVVNHVKY-NVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLA 84 (524)
Q Consensus 11 ~~~~~~NG~~p-gP~i~~~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~ 84 (524)
...+++||+.+ .|+|.+++|+++|+||.|.... ...++..|....... .||.+. +.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 45789999952 4799999999999999999754 567888887765543 788532 3456799999999999995
Q ss_pred Ccc-c---ceeeccChHHHHhhce-eeEEEcCCCCCC--CCCC---CC-Cc----cEEEEec-eee---cc-cHH--H-H
Q 009854 85 GQR-G---TLWWHAHILWLRATVH-GAIVILPKRGVP--YPFP---KP-HK----EVTVILS-EWW---KS-DVE--A-V 141 (524)
Q Consensus 85 ~~~-G---t~wyH~H~~~~~~Gl~-G~~iV~~~~~~~--~~~~---~~-~~----e~~l~~~-d~~---~~-~~~--~-~ 141 (524)
++. | .||...-.......+. .+++........ .|.+ .. +. +..+.+. ... .. ... . .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 444 4 7998865421111111 233333322110 1111 00 00 0000000 000 00 000 0 0
Q ss_pred ----HHHHH-hcCCC--CCCCceEEEcCCCCCC----------CC----CCCC-------------CceeEEEecCCEEE
Q 009854 142 ----INEAL-KSGLA--PNVSDAHTINGHPGPL----------SS----CPSQ-------------GGFKLPVESGKTYM 187 (524)
Q Consensus 142 ----~~~~~-~~g~~--~~~~~~~~iNG~~~~~----------~~----~~~~-------------~~p~~~v~~G~~~r 187 (524)
..... ..... ......+.+||..+.. +. .... ..-.++++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001357788887631 00 0000 12346888899999
Q ss_pred EEEEecCCCCeEEEEEcCceeeEEEec-----C------cccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 188 LRLINAALNEELFFKIAGHKLTVVEVD-----A------AYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 188 lRliN~~~~~~~~~~l~gh~~~via~D-----G------~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
+=|-|.. ...|+||||||.|.|++.. + ++..|...|++.+.++.=+-+.|++++ ||.|.+|||.
T Consensus 427 iViqn~~-~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPL-FSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QGMWNVRSQK 501 (545)
T ss_pred EEEeCCC-CCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-CeEEeeeecC
Confidence 8888876 5699999999999999762 1 123588899999999999999999998 6999999994
No 31
>PLN02354 copper ion binding / oxidoreductase
Probab=99.26 E-value=1.2e-10 Score=123.08 Aligned_cols=239 Identities=14% Similarity=0.113 Sum_probs=147.1
Q ss_pred cEEEEcCcCC------CcEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----cccccCCCCCceEEE
Q 009854 12 PIVTVNGYFP------GPTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYN 80 (524)
Q Consensus 12 ~~~~~NG~~p------gP~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~ 80 (524)
..+++||+.. -|+|.+++|++.|+||.|... ....+|..|....... .||++. +....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 279999999999999999984 5577888888766543 899653 335668999999999
Q ss_pred EEeCCcccceeeccChHHHH--hhceeeEEEcCCCCCC-CCCCCCCccEEEEe---ceeec-------cc---HHHH---
Q 009854 81 FTLAGQRGTLWWHAHILWLR--ATVHGAIVILPKRGVP-YPFPKPHKEVTVIL---SEWWK-------SD---VEAV--- 141 (524)
Q Consensus 81 ~~~~~~~Gt~wyH~H~~~~~--~Gl~G~~iV~~~~~~~-~~~~~~~~e~~l~~---~d~~~-------~~---~~~~--- 141 (524)
+++++.+|.||......... ..-.+.|..++..... ...+.......... .+... .. ....
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99966789999988742111 1222333332221100 00110000000000 00000 00 0000
Q ss_pred H--HHHH--hcCCCCC-CCceEEEcCCCCCCC----------CCC-C-------------------CCceeEEEecCCEE
Q 009854 142 I--NEAL--KSGLAPN-VSDAHTINGHPGPLS----------SCP-S-------------------QGGFKLPVESGKTY 186 (524)
Q Consensus 142 ~--~~~~--~~g~~~~-~~~~~~iNG~~~~~~----------~~~-~-------------------~~~p~~~v~~G~~~ 186 (524)
. .... ....... ....+.+||..+... ... + ...-.+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 0000 0000000 012467888765210 000 0 01134677889999
Q ss_pred EEEEEecCCCCeEEEEEcCceeeEEEecCc-----------ccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 187 MLRLINAALNEELFFKIAGHKLTVVEVDAA-----------YVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 187 rlRliN~~~~~~~~~~l~gh~~~via~DG~-----------~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
.+-|.|.. ...|+||||||.|.|++..-+ +..|...|++.+.++.=.-+.|++++ ||-|.+|||.
T Consensus 429 eiVi~n~~-~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PGvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHE-KSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AGMWNIRSEN 504 (552)
T ss_pred EEEEeCCC-CCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-CeEEeeeccc
Confidence 99999976 568999999999999976532 12488899999999999999999998 6999999996
No 32
>PLN02991 oxidoreductase
Probab=99.26 E-value=6.5e-10 Score=116.88 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=145.5
Q ss_pred cccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCC-CceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeC
Q 009854 10 TKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKY-NVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLA 84 (524)
Q Consensus 10 ~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~ 84 (524)
....+++||+...+++.|++|+++|+||.|.... ...+++.|....... .||.+. +.+..|.||||++..++++
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 3568999999655899999999999999999854 467888888765543 799642 3456789999999999997
Q ss_pred CcccceeeccChHHHHhhcee-eEEEcCCCCCC--CCCCC--CCccEEEEec---eeec-----cc---H-HHH----HH
Q 009854 85 GQRGTLWWHAHILWLRATVHG-AIVILPKRGVP--YPFPK--PHKEVTVILS---EWWK-----SD---V-EAV----IN 143 (524)
Q Consensus 85 ~~~Gt~wyH~H~~~~~~Gl~G-~~iV~~~~~~~--~~~~~--~~~e~~l~~~---d~~~-----~~---~-~~~----~~ 143 (524)
+..|.||.-.........+.+ +++-....... .+.+. .+.+...-.. +... .. . ... ..
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 778999976543111111112 22222211110 01110 0000000000 0000 00 0 000 00
Q ss_pred HHH--hcCCC-CCCCceEEEcCCCCCC----------CCCCC-----------------CCceeEEEecCCEEEEEEEec
Q 009854 144 EAL--KSGLA-PNVSDAHTINGHPGPL----------SSCPS-----------------QGGFKLPVESGKTYMLRLINA 193 (524)
Q Consensus 144 ~~~--~~g~~-~~~~~~~~iNG~~~~~----------~~~~~-----------------~~~p~~~v~~G~~~rlRliN~ 193 (524)
... ..+.. ....-.+.|||..+.. ++.++ ...-.+.++.|+++.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 00000 0001246778876521 00000 011245778888888888887
Q ss_pred CCCCeEEEEEcCceeeEEEecCc-----------ccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 194 ALNEELFFKIAGHKLTVVEVDAA-----------YVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 194 ~~~~~~~~~l~gh~~~via~DG~-----------~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
. ...|+||||||.|.|++...+ +..|...|++.+.++.=.-+.|++++ ||-|.+|||.
T Consensus 428 ~-~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~W~~HCHi 496 (543)
T PLN02991 428 E-DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VGMWNLRSEL 496 (543)
T ss_pred C-CCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CEEeeeeeCc
Confidence 6 468999999999999985421 12588899999999999999999998 6999999996
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.26 E-value=1.6e-10 Score=122.58 Aligned_cols=240 Identities=16% Similarity=0.146 Sum_probs=141.6
Q ss_pred cEEEEcCcC---------------CCcEEEEecCCEEEEEEEeCCCC-CceEEecCcc-ccCCCCCCCCCc----ccccc
Q 009854 12 PIVTVNGYF---------------PGPTIVAREDDTVLVKVVNHVKY-NVSIHWHGVR-QLRTCWADGPAY----ITQCP 70 (524)
Q Consensus 12 ~~~~~NG~~---------------pgP~i~~~~Gd~v~v~l~N~l~~-~~~iH~HG~~-~~~~~~~DG~~~----~~q~~ 70 (524)
..+++||+. ..|+|++++|+++|+||.|.... ...+++.|.. ..... .||++. +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 568999983 12789999999999999999854 4678887776 44433 899642 23456
Q ss_pred CCCCCceEEEEEeCCc-------ccceeeccChHHHHhhc--eeeEEEcCCCCCCCC-CCC-----C------CccEEEE
Q 009854 71 IQPGQNYIYNFTLAGQ-------RGTLWWHAHILWLRATV--HGAIVILPKRGVPYP-FPK-----P------HKEVTVI 129 (524)
Q Consensus 71 i~PG~~~~y~~~~~~~-------~Gt~wyH~H~~~~~~Gl--~G~~iV~~~~~~~~~-~~~-----~------~~e~~l~ 129 (524)
|.||||++..+++++. +|-||-..-.......+ .+.|.-+.......+ .+. . ..+..+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 8999999999999543 48898775321111112 233322212111111 000 0 0111111
Q ss_pred -eceee---cccHHHHHHHH-HhcCCC--C-CCCceEEEcCCCCCCC------------C---C------------CCCC
Q 009854 130 -LSEWW---KSDVEAVINEA-LKSGLA--P-NVSDAHTINGHPGPLS------------S---C------------PSQG 174 (524)
Q Consensus 130 -~~d~~---~~~~~~~~~~~-~~~g~~--~-~~~~~~~iNG~~~~~~------------~---~------------~~~~ 174 (524)
+..-. ........... ...+.. . .....+++||..+..- . . ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 10000 00000000000 000000 0 0113578888765310 0 0 0001
Q ss_pred ceeEEEecCCEEEEEEEecC-------CCCeEEEEEcCceeeEEEec-Ccc-----------cceeEecEEEeC------
Q 009854 175 GFKLPVESGKTYMLRLINAA-------LNEELFFKIAGHKLTVVEVD-AAY-----------VKPFKTETVLIA------ 229 (524)
Q Consensus 175 ~p~~~v~~G~~~rlRliN~~-------~~~~~~~~l~gh~~~via~D-G~~-----------~~P~~~d~v~l~------ 229 (524)
.-.+.++.|++++|.|.|.. ....|+||||||+|.||+.. |.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12567889999999999975 25689999999999999853 432 148889999984
Q ss_pred ----CCceEEEEEEeCCCCCceEEEEee
Q 009854 230 ----PGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 230 ----pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
++.-+-+.+++++ ||.|.||||.
T Consensus 491 ~~~~~~~~~~ir~~~dN-PG~W~~HCHi 517 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTN-PGVWMMHCHI 517 (538)
T ss_pred cccCCCceEEEEEEcCC-CeeEEEeccc
Confidence 7788889999987 6999999995
No 34
>PLN02604 oxidoreductase
Probab=99.24 E-value=2.2e-10 Score=122.11 Aligned_cols=227 Identities=15% Similarity=0.110 Sum_probs=135.1
Q ss_pred cEEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeCCccc-ceeeccCh
Q 009854 23 PTIVAREDDTVLVKVVNHVK-YNVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLAGQRG-TLWWHAHI 96 (524)
Q Consensus 23 P~i~~~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~~G-t~wyH~H~ 96 (524)
++|.+++|+++|+||+|... ....+++.|....... .||.+. +....|.||||++..+++++.+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 58999999999999999974 4566777777655433 788543 33567899999999999855555 79988543
Q ss_pred HHH---H-hhceeeEEEcCCCC--CCCCCCC----CCccEEEEecee-e--------cccHHHHHHH--HHhcCCCCCCC
Q 009854 97 LWL---R-ATVHGAIVILPKRG--VPYPFPK----PHKEVTVILSEW-W--------KSDVEAVINE--ALKSGLAPNVS 155 (524)
Q Consensus 97 ~~~---~-~Gl~G~~iV~~~~~--~~~~~~~----~~~e~~l~~~d~-~--------~~~~~~~~~~--~~~~g~~~~~~ 155 (524)
... . .+. +++...... ...+... ...+....+... . .......... ...........
T Consensus 303 ~~~~~~~~~~~--aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPGL--AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCccee--EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 221 1 222 333332211 0000000 000000000000 0 0000000000 00000000001
Q ss_pred ceEEEcCCCCCCC---------------CCCC-----------------------CCceeEEEecCCEEEEEEEecCC--
Q 009854 156 DAHTINGHPGPLS---------------SCPS-----------------------QGGFKLPVESGKTYMLRLINAAL-- 195 (524)
Q Consensus 156 ~~~~iNG~~~~~~---------------~~~~-----------------------~~~p~~~v~~G~~~rlRliN~~~-- 195 (524)
..|.|||..+... -|.. .....+.++.|++|.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 2577788764210 0000 01124788999999999999852
Q ss_pred ---CCeEEEEEcCceeeEEEec-Ccc-----------cceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 196 ---NEELFFKIAGHKLTVVEVD-AAY-----------VKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 196 ---~~~~~~~l~gh~~~via~D-G~~-----------~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
...|+||||||.|+|++.. |.+ ..|...|++.+.++.-+-|.|++++ ||-|.+|||.
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG~WlfHCHI 532 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PGVWAFHCHI 532 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-CeEeeEeecc
Confidence 3579999999999999987 432 1377789999999999999999998 7999999995
No 35
>PLN02792 oxidoreductase
Probab=99.22 E-value=1.9e-09 Score=113.47 Aligned_cols=241 Identities=14% Similarity=0.073 Sum_probs=146.3
Q ss_pred cccEEEEcCcCC--CcEEEEecCCEEEEEEEeCCCC-CceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEE
Q 009854 10 TKPIVTVNGYFP--GPTIVAREDDTVLVKVVNHVKY-NVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFT 82 (524)
Q Consensus 10 ~~~~~~~NG~~p--gP~i~~~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~ 82 (524)
....+++||+-. .++|.+++|+++|+||.|.... ...+++.|....... .||.+- ++...|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 457899999832 4789999999999999999854 567888888765543 788542 34566999999999999
Q ss_pred eCCcccceeeccChHHHHhhcee-eEEEcCCCCCCC---C-CCCC-CccEEEEe---ceeecc---c--H-H---HH--H
Q 009854 83 LAGQRGTLWWHAHILWLRATVHG-AIVILPKRGVPY---P-FPKP-HKEVTVIL---SEWWKS---D--V-E---AV--I 142 (524)
Q Consensus 83 ~~~~~Gt~wyH~H~~~~~~Gl~G-~~iV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~---~--~-~---~~--~ 142 (524)
+++.+|.||...........+.+ +++-........ + .+.. +.....-. .+.... . . . .. +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 96667999988653211111122 333332211110 0 0000 00000000 000000 0 0 0 00 0
Q ss_pred H--HHH-hcCCCCCC--CceEEEcCCCCCC----------CC---C-C----CC----------CceeEEEecCCEEEEE
Q 009854 143 N--EAL-KSGLAPNV--SDAHTINGHPGPL----------SS---C-P----SQ----------GGFKLPVESGKTYMLR 189 (524)
Q Consensus 143 ~--~~~-~~g~~~~~--~~~~~iNG~~~~~----------~~---~-~----~~----------~~p~~~v~~G~~~rlR 189 (524)
. ... .......+ .-.+.+||..+.. ++ . + .. ....+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 00000000 1246778876531 00 0 0 00 1334678889999999
Q ss_pred EEecCCCCeEEEEEcCceeeEEEecC-----------cccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 190 LINAALNEELFFKIAGHKLTVVEVDA-----------AYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 190 liN~~~~~~~~~~l~gh~~~via~DG-----------~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
|-|.. ...|+||||||.|.||+... +++.|...||+.+.++.=.-+-|++++ ||-|.+|||.
T Consensus 417 iqn~~-~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PGvW~~HCh~ 489 (536)
T PLN02792 417 FQNRE-KIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VGMWNLRSQF 489 (536)
T ss_pred EECCC-CCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CEEEeeeEcc
Confidence 99865 45799999999999997531 123588899999999999999999998 6999999984
No 36
>PLN02191 L-ascorbate oxidase
Probab=99.06 E-value=5.4e-09 Score=111.45 Aligned_cols=234 Identities=14% Similarity=0.124 Sum_probs=135.9
Q ss_pred EcCcCCCcEEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCCc----cccccCCCCCceEEEEEeCCcc-cc
Q 009854 16 VNGYFPGPTIVAREDDTVLVKVVNHV-KYNVSIHWHGVRQLRTCWADGPAY----ITQCPIQPGQNYIYNFTLAGQR-GT 89 (524)
Q Consensus 16 ~NG~~pgP~i~~~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~~-Gt 89 (524)
+||+.-.++|.+++|++.|+||.|.. .....+++.|....... .||++. +....|.||||++..+++++.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 44443223799999999999999997 45566777777755543 899654 3356689999999999996555 48
Q ss_pred eeeccChHHHH----hhceeeEEEc-CCCCCCCCC------CCCCc-----cEEE-Eeceee-cccHHHHHHH-HHhcCC
Q 009854 90 LWWHAHILWLR----ATVHGAIVIL-PKRGVPYPF------PKPHK-----EVTV-ILSEWW-KSDVEAVINE-ALKSGL 150 (524)
Q Consensus 90 ~wyH~H~~~~~----~Gl~G~~iV~-~~~~~~~~~------~~~~~-----e~~l-~~~d~~-~~~~~~~~~~-~~~~g~ 150 (524)
||-..-..... .++ +++-. .......+. +..+. .... .+.... .......... ......
T Consensus 298 y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred EEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 99876432211 232 33333 221110000 00000 0000 000000 0000000000 000000
Q ss_pred C-CCCCceEEEcCCCCCCCC-----------------------------------CC--CCCceeEEEecCCEEEEEEEe
Q 009854 151 A-PNVSDAHTINGHPGPLSS-----------------------------------CP--SQGGFKLPVESGKTYMLRLIN 192 (524)
Q Consensus 151 ~-~~~~~~~~iNG~~~~~~~-----------------------------------~~--~~~~p~~~v~~G~~~rlRliN 192 (524)
. ......+++||..+.... |. ....-.+.++.|+++.+=|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 0 000124667776541000 00 001124567779999999998
Q ss_pred cC-----CCCeEEEEEcCceeeEEEecCcc------------cceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 193 AA-----LNEELFFKIAGHKLTVVEVDAAY------------VKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 193 ~~-----~~~~~~~~l~gh~~~via~DG~~------------~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
.. ....|+||||||+|.||+...+. ..|...|++.+.++.=.-+.|++++ ||-|.+|||.
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG~Wl~HCHi 532 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PGVWFFHCHI 532 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CEEEEEecCc
Confidence 75 35689999999999999765421 2477899999999999999999998 6999999995
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.05 E-value=1.5e-09 Score=94.55 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=72.4
Q ss_pred CceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccc-----------ceeEecEEEeCCCceEEEEEEeCC
Q 009854 174 GGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV-----------KPFKTETVLIAPGQTTNVLLSAAH 242 (524)
Q Consensus 174 ~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-----------~P~~~d~v~l~pgeR~dv~v~~~~ 242 (524)
....++++.|++++|+|.|.+ ...|+|||||+.|+|++.++... .|...|++.+.+|+++.+.+++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCC-CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 447899999999999999988 67999999999999999999873 578999999999999999999995
Q ss_pred CCCceEEEEeeC
Q 009854 243 ATGKYLVAASPF 254 (524)
Q Consensus 243 ~~g~~~~~~~~~ 254 (524)
||.|.++||..
T Consensus 111 -~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 -PGPWLFHCHIL 121 (138)
T ss_dssp -TEEEEEEESSH
T ss_pred -ceEEEEEEchH
Confidence 79999999964
No 38
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.00 E-value=9.9e-10 Score=92.09 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCccccEE-EEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCC
Q 009854 7 LCSTKPIV-TVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAG 85 (524)
Q Consensus 7 ~g~~~~~~-~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~ 85 (524)
.|.....| ++|+++..+.|+|++||+|++++.|..+.++..-+++. |. +..|.||++.+++|.+ +
T Consensus 44 ~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~---------gi----s~~I~pGet~TitF~a-d 109 (135)
T TIGR03096 44 EGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAY---------GI----SEVIKAGETKTISFKA-D 109 (135)
T ss_pred CCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCC---------Cc----ceEECCCCeEEEEEEC-C
Confidence 45555556 99999998999999999999999999865543222221 11 1348999999999998 8
Q ss_pred cccceeeccChHHHH
Q 009854 86 QRGTLWWHAHILWLR 100 (524)
Q Consensus 86 ~~Gt~wyH~H~~~~~ 100 (524)
++|+|||||-.+...
T Consensus 110 KpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 110 KAGAFTIWCQLHPKN 124 (135)
T ss_pred CCEEEEEeCCCCChh
Confidence 999999999877544
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.77 E-value=1.3e-06 Score=92.90 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=137.0
Q ss_pred ceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEE-EecCcccceeEecEEEeCCCceE
Q 009854 156 DAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVV-EVDAAYVKPFKTETVLIAPGQTT 234 (524)
Q Consensus 156 ~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~P~~~d~v~l~pgeR~ 234 (524)
..++|||+. ..|.|+++.|+++++++.|.. .....+|.||.....- -.||. |. ..-.|.||+++
T Consensus 49 ~vi~vNGq~---------PGPtI~~~~GD~v~V~V~N~L-~~~ttIHWHGl~q~~t~w~DGv---~~--TQcPI~PG~sf 113 (596)
T PLN00044 49 EAIGINGQF---------PGPALNVTTNWNLVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGV---GG--TNCAIPAGWNW 113 (596)
T ss_pred EEEEEcCcC---------CCCcEEEECCCEEEEEEEeCC-CCCccEEECCccCCCCccccCC---CC--CcCCcCCCCcE
Confidence 479999985 349999999999999999998 5777889998765433 37886 33 34689999999
Q ss_pred EEEEEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCC
Q 009854 235 NVLLSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPAR 314 (524)
Q Consensus 235 dv~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~ 314 (524)
...|++++.+|+||.|+|.. .+ .. ....+-|...+....+ .| .+...+.... --+.+....
T Consensus 114 tY~F~~~dq~GT~WYHsH~~--~Q---~~-~Gl~GalII~~~~~~~---~P-~~~~~~~e~~----i~l~DW~~~----- 174 (596)
T PLN00044 114 TYQFQVKDQVGSFFYAPSTA--LH---RA-AGGYGAITINNRDVIP---IP-FGFPDGGDIT----LFIADWYAR----- 174 (596)
T ss_pred EEEEEeCCCCceeEeeccch--hh---hh-CcCeeEEEEcCccccc---cc-ccCCcccceE----EEecccccC-----
Confidence 99999964479999999842 11 11 1223333333221110 01 0000000000 000000000
Q ss_pred CCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCCCccccCCCCCCCCcc
Q 009854 315 VPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNPPVTYNFTGTQPANFQ 394 (524)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 394 (524)
. .. .+.-.+..+.. .+..-...|||+.- +. +.+....+
T Consensus 175 -~--~~-~~~~~l~~g~~------~~~~d~~lING~g~------------------~~------------~n~~~~~~-- 212 (596)
T PLN00044 175 -D--HR-ALRRALDAGDL------LGAPDGVLINAFGP------------------YQ------------YNDSLVPP-- 212 (596)
T ss_pred -C--HH-HHHHHHhcCCC------CCCCCceEEcccCc------------------cc------------cCCccccC--
Confidence 0 00 00000000000 00000012333210 00 00000000
Q ss_pred cCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEE
Q 009854 395 TNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAI 474 (524)
Q Consensus 395 ~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~i 474 (524)
......+.++.|++++|.|+|.+ ....--|+|-||+|.|++.. |. +..|...|++.|.+|+..-+
T Consensus 213 -~~~~~~i~V~~Gk~yRlRiINaa--~~~~~~fsIdgH~mtVIa~D-G~-----------~v~P~~vd~i~I~~GQRydV 277 (596)
T PLN00044 213 -GITYERINVDPGKTYRFRVHNVG--VATSLNFRIQGHNLLLVEAE-GS-----------YTSQQNYTNLDIHVGQSYSF 277 (596)
T ss_pred -CCccceEEECCCCEEEEEEEEcc--CCceEEEEECCCEEEEEEeC-Cc-----------ccCceeeeeEEEcCCceEEE
Confidence 01123689999999999999976 35677899999999999984 32 34567789999999999999
Q ss_pred EEEeCCc-e--eEE
Q 009854 475 RFRADNP-G--VWF 485 (524)
Q Consensus 475 rf~adnp-G--~w~ 485 (524)
.++++.+ | .|+
T Consensus 278 LV~a~q~~~~~Y~i 291 (596)
T PLN00044 278 LLTMDQNASTDYYV 291 (596)
T ss_pred EEECCCCCCCceEE
Confidence 9999864 5 576
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.77 E-value=3e-08 Score=83.05 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=67.8
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
+++.++.|+.+++.+.|.. ...+.+|+||.+.- .. .+. |..... -.-.|.||+..+.+|+++
T Consensus 26 PtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~--~~---~~~---DG~~~~-------~~~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQP--PS---PWM---DGVPGV-------TQCPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEES---SSGBSEEEETSBST--TG---GGG---SGGTTT-------SGSSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEecc---ccccccccceeeee--ee---eec---CCcccc-------cceeEEeecceeeeEeee
Confidence 5789999999999999964 56789999997531 00 000 000000 012578999999999998
Q ss_pred C-ceeEEEEeechHhhhccceEEEEEcCC
Q 009854 480 N-PGVWFMHCHLEVHTTWGLKMAFIVDNG 507 (524)
Q Consensus 480 n-pG~w~~HCHil~H~d~GM~~~~~V~~~ 507 (524)
. +|.|.||||...|...||...|+|++.
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 8 999999999999988999999999864
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.24 E-value=0.00011 Score=77.43 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=138.1
Q ss_pred ceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceee-EEEecCcccceeEecEEEeCCCceE
Q 009854 156 DAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLT-VVEVDAAYVKPFKTETVLIAPGQTT 234 (524)
Q Consensus 156 ~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~-via~DG~~~~P~~~d~v~l~pgeR~ 234 (524)
..++|||+. ..|.|.++.|+++.++++|-. .....+|-||-... ---.||.++ ..=.|.|||.+
T Consensus 48 ~vi~iNG~f---------PGP~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~ 112 (563)
T KOG1263|consen 48 QVITINGQF---------PGPTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENF 112 (563)
T ss_pred eeEeecCCC---------CCCeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCcc-----ccCCcCCCCeE
Confidence 578999985 349999999999999999996 68888888876532 223488432 33357899999
Q ss_pred EEEEEeCCCCCceEEEEeeCCCCCccccCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCC
Q 009854 235 NVLLSAAHATGKYLVAASPFLDTPAILVDNKTATATVHYSGTLGSTATTLTVPPPRNATPVAANFTASLRSLNSKKYPAR 314 (524)
Q Consensus 235 dv~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~ 314 (524)
...++.+...|+||.++|...... ....+.|........+ .| .+
T Consensus 113 tY~F~v~~q~GT~~yh~h~~~~Ra------~G~~G~liI~~~~~~p---~p-f~-------------------------- 156 (563)
T KOG1263|consen 113 TYRFTVKDQIGTLWYHSHVSWQRA------TGVFGALIINPRPGLP---VP-FP-------------------------- 156 (563)
T ss_pred EEEEEeCCcceeEEEeeccccccc------cCceeEEEEcCCccCC---CC-CC--------------------------
Confidence 999999966799999998532111 1133333332211100 00 00
Q ss_pred CCCCcceEEEEEeccCccCCccccCCceEEEEecCeeeecCcchhhhhhhccccccccCCCCCCC-CccccCCCCCCCCc
Q 009854 315 VPLKIDHSLFFTIGLGINPCATCVNGSRVVADINNVTFVMPTISLLQAHFFKIGGVFTDDFPGNP-PVTYNFTGTQPANF 393 (524)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~ 393 (524)
..++++.+.++. |.-+ -....+..... ..| ..+..+ -.+++-.+ .
T Consensus 157 ---~pd~E~~ill~d---------------W~~~------~~~~~l~~~~~-~~~----~~p~~~D~~~iNg~~-----g 202 (563)
T KOG1263|consen 157 ---KPDKEFTILLGD---------------WYKN------LNHKNLKNFLD-RTG----ALPNPSDGVLINGRS-----G 202 (563)
T ss_pred ---CCCceeEEEeEe---------------eccc------cCHHHHHHhhc-cCC----CCCCCCCceEECCCC-----C
Confidence 112222211100 1110 00000000000 000 000000 00000000 1
Q ss_pred ccCCCceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEE
Q 009854 394 QTNNGTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTA 473 (524)
Q Consensus 394 ~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~ 473 (524)
....|...+.+..|++..|.|+|.++. ...+ |.+-+|...|++.. | .+..|..-|++.|-+|....
T Consensus 203 ~~~~~~~~l~v~pGktY~lRiiN~g~~-~~l~-F~I~~H~ltvVe~D-g-----------~y~~p~~~~~l~i~~GQ~~~ 268 (563)
T KOG1263|consen 203 FLYNCTPTLTVEPGKTYRLRIINAGLN-TSLN-FSIANHQLTVVEVD-G-----------AYTKPFTTDSLDIHPGQTYS 268 (563)
T ss_pred cccCceeEEEEcCCCEEEEEEEccccc-cceE-EEECCeEEEEEEec-c-----------eEEeeeeeceEEEcCCcEEE
Confidence 122346788999999999999998853 3445 99999999999984 2 23445667999999999999
Q ss_pred EEEEeCC-ce-eEEEEee
Q 009854 474 IRFRADN-PG-VWFMHCH 489 (524)
Q Consensus 474 irf~adn-pG-~w~~HCH 489 (524)
+..++|. ++ .|+.=|=
T Consensus 269 vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 269 VLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEeCCCCCCcEEEEEEe
Confidence 9999975 55 5665554
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.17 E-value=7.2e-06 Score=66.60 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=55.6
Q ss_pred CcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCc--cccccCCCCCceEEEEEeCCcccceeeccChHHH
Q 009854 22 GPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAY--ITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWL 99 (524)
Q Consensus 22 gP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~--~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~ 99 (524)
...|++++||+| +|+|....++++.++........ .+..+. .+...+.||+++++.|. .+|+|.|+|- ...
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~-~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE-PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC-Ccc
Confidence 378999999986 55687777788777654322110 010111 12234789999999886 3899999997 223
Q ss_pred HhhceeeEEEc
Q 009854 100 RATVHGAIVIL 110 (524)
Q Consensus 100 ~~Gl~G~~iV~ 110 (524)
.+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 37999999985
No 43
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.13 E-value=1.3e-05 Score=62.84 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=53.0
Q ss_pred CcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChHHHHh
Q 009854 22 GPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWLRA 101 (524)
Q Consensus 22 gP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~~~ 101 (524)
.+.|++++||+|. ++|....++++++.........+.. ..+.||+++++.| .++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---
Confidence 3799999999975 5788778888887653211111111 1257888888777 46899999998775
Q ss_pred hceeeEEEc
Q 009854 102 TVHGAIVIL 110 (524)
Q Consensus 102 Gl~G~~iV~ 110 (524)
.|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 599999885
No 44
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.09 E-value=1.6e-05 Score=69.28 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=58.4
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecC---C--cEEEE
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPS---G--GWTAI 474 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp---~--g~v~i 474 (524)
+.+.++.|+.|++++.|.. ....|.|-||.+.-..- ..+..+.. +.....-.+|+ | ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~------~~p~mdG~------~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYP------YMPGMDGL------GFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCccc------cccccCCC------CccccCcccCCCCCCccceeEE
Confidence 5678999999999999964 23567766663221000 00000000 11111112222 2 24678
Q ss_pred EEEeCCceeEEEEeechHhhhccceEEEEEc
Q 009854 475 RFRADNPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 475 rf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
.|+++.+|.|.||||+..|...||...+.|+
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 8888899999999999999999999999884
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.04 E-value=1.8e-05 Score=70.41 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=76.6
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
...+.++.|++++|.|+|.+ ....+.|++.||.|.|++.... +..|...|++.|.+|+.+-|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 46789999999999999976 3557999999999999998421 223678899999999999999999
Q ss_pred CC-ceeEEEEe----echHhhhccceEEEEEcC
Q 009854 479 DN-PGVWFMHC----HLEVHTTWGLKMAFIVDN 506 (524)
Q Consensus 479 dn-pG~w~~HC----Hil~H~d~GM~~~~~V~~ 506 (524)
+. +|.|.++| +...+...|+..-+.+-+
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667778888887776543
No 46
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.97 E-value=1e-05 Score=66.45 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=49.3
Q ss_pred EEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeecc
Q 009854 15 TVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHA 94 (524)
Q Consensus 15 ~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~ 94 (524)
.-|+++-...|+++.|+.|+|+++|.....+.+...++... ..|.||++.+++|.. .++|+|=|+|
T Consensus 27 ~~~~~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C 92 (104)
T PF13473_consen 27 VTDFGFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYC 92 (104)
T ss_dssp ---EEEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-
T ss_pred ccCCeEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEc
Confidence 34566654699999999999999999888766666664322 348999999999987 8999999999
Q ss_pred ChHHHHhhceeeEEE
Q 009854 95 HILWLRATVHGAIVI 109 (524)
Q Consensus 95 H~~~~~~Gl~G~~iV 109 (524)
..++ . |.|-|+|
T Consensus 93 ~~~~--~-m~G~liV 104 (104)
T PF13473_consen 93 TMHP--N-MKGTLIV 104 (104)
T ss_dssp SSS---T-TB-----
T ss_pred CCCC--c-ceecccC
Confidence 8766 2 7777765
No 47
>PRK02710 plastocyanin; Provisional
Probab=97.94 E-value=3.9e-05 Score=64.50 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=54.9
Q ss_pred CCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChHHH
Q 009854 20 FPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWL 99 (524)
Q Consensus 20 ~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~ 99 (524)
|-.+.|.+++||+| +++|....++++.+.|.... . .+...+.||++++|.|.. +|+|-|+|-.| .
T Consensus 44 F~P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~----~-----~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~ 108 (119)
T PRK02710 44 FEPSTLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL----S-----HKDLAFAPGESWEETFSE---AGTYTYYCEPH-R 108 (119)
T ss_pred EeCCEEEEcCCCEE--EEEECCCCCceEEecCCccc----c-----ccccccCCCCEEEEEecC---CEEEEEEcCCC-c
Confidence 33379999999985 56787777888877653210 0 111247899999999963 89999999733 2
Q ss_pred HhhceeeEEEc
Q 009854 100 RATVHGAIVIL 110 (524)
Q Consensus 100 ~~Gl~G~~iV~ 110 (524)
.+||.|.|+|+
T Consensus 109 ~~gM~G~I~V~ 119 (119)
T PRK02710 109 GAGMVGKITVE 119 (119)
T ss_pred cCCcEEEEEEC
Confidence 37999999984
No 48
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.93 E-value=2.2e-05 Score=63.81 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=53.3
Q ss_pred cEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCC-CCCccccccCCCCCceEEEEEeCCcccceeeccChHHHHh
Q 009854 23 PTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWAD-GPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWLRA 101 (524)
Q Consensus 23 P~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~D-G~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~~~ 101 (524)
..|.+++||+|+ ++|....++++.+---........+ ....-....+.||+++++.|+ ++|+|.|+|-. ...+
T Consensus 17 ~~i~V~~G~tV~--~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTVT--FVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEEE--EEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEEE--EEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 799999999864 6666666777666331110000000 000001234789999999997 68999999983 3447
Q ss_pred hceeeEEEc
Q 009854 102 TVHGAIVIL 110 (524)
Q Consensus 102 Gl~G~~iV~ 110 (524)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999985
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.73 E-value=0.00028 Score=61.57 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=71.3
Q ss_pred EEEcCcCCC-cEEEEecCCEEEEEEEeCCCCCceEEecCccccC------CCCCCCC----Cccc-----cccCCCCCce
Q 009854 14 VTVNGYFPG-PTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLR------TCWADGP----AYIT-----QCPIQPGQNY 77 (524)
Q Consensus 14 ~~~NG~~pg-P~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~------~~~~DG~----~~~~-----q~~i~PG~~~ 77 (524)
+-|||+..| ++|.+..|-+|.|+|+|....++++-. +.... ....||. .|.+ -..|.+|++.
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--ecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 668999888 899999999999999999877777655 22111 1124662 1222 1346678885
Q ss_pred EEEEEeCCcccceeeccChHHHH-hhceeeEEEcCCCC
Q 009854 78 IYNFTLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRG 114 (524)
Q Consensus 78 ~y~~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~ 114 (524)
.-.|.. -++|+|||-|-..+.. +||+|-+||...-.
T Consensus 153 sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 153 SGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred EEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 555554 7899999999988776 99999999986644
No 50
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.00012 Score=77.13 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=69.2
Q ss_pred cCCCCccccEE--EEcCcCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEE
Q 009854 4 ATRLCSTKPIV--TVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 4 ~~~~g~~~~~~--~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 81 (524)
+.++|....++ +..-.+--..|+|++||+|+++|+|.....-.+ ||..+... |+ . .-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~-~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---N-MEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---c-EEEcCCceEEEEE
Confidence 45777766554 344455446899999999999999964322222 56554331 11 1 2378999999999
Q ss_pred EeCCcccceeeccChH-H-HHhhceeeEEEcCC
Q 009854 82 TLAGQRGTLWWHAHIL-W-LRATVHGAIVILPK 112 (524)
Q Consensus 82 ~~~~~~Gt~wyH~H~~-~-~~~Gl~G~~iV~~~ 112 (524)
++ +++|+|||+|..- + .-.+|.|.++|+++
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 98 8999999999752 2 22799999999864
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.69 E-value=0.00038 Score=62.23 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=73.6
Q ss_pred cEEEEcCcCCC-cEEEEecCCEEEEEEEeCCCCCceEEe--cCccccC--CCCCCCCC----c-----cccccCCCCCce
Q 009854 12 PIVTVNGYFPG-PTIVAREDDTVLVKVVNHVKYNVSIHW--HGVRQLR--TCWADGPA----Y-----ITQCPIQPGQNY 77 (524)
Q Consensus 12 ~~~~~NG~~pg-P~i~~~~Gd~v~v~l~N~l~~~~~iH~--HG~~~~~--~~~~DG~~----~-----~~q~~i~PG~~~ 77 (524)
..+-|||+.-| ++|.+-.|-+|.|+|+|....++++-. -+..++. .-..||.- + .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47889999877 899999999999999998765555322 1211111 11245511 1 122468899999
Q ss_pred EEEEEeCCcccceeeccChHHHH-hhceeeEEEcCCCCC
Q 009854 78 IYNFTLAGQRGTLWWHAHILWLR-ATVHGAIVILPKRGV 115 (524)
Q Consensus 78 ~y~~~~~~~~Gt~wyH~H~~~~~-~Gl~G~~iV~~~~~~ 115 (524)
.-.|.. -++|.|||-|-..+.. +||++-|+|...-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877754 6799999999988777 999999999876543
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.61 E-value=0.00027 Score=57.30 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=57.2
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
..+.++.|++|+|+ |.+ ...|.+.++...+..-.. ........+++.+.||+...+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK--------------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh--------------hhcccccccccccCCCCEEEEEeCC-
Confidence 35789999999987 432 456777765432111000 0001123467788999998887765
Q ss_pred CceeEEEEeechHhhhccceEEEEEc
Q 009854 480 NPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 480 npG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
+|.|.|||- -|...||...+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999884
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.37 E-value=0.00088 Score=56.58 Aligned_cols=59 Identities=17% Similarity=0.442 Sum_probs=47.6
Q ss_pred EEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeCC
Q 009854 401 IYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRADN 480 (524)
Q Consensus 401 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 480 (524)
.+.++.|+.|+|++.|.+ +..|.+-++++.+ ...|+||+...++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 578999999999999854 4567766665421 346788999999999999
Q ss_pred ceeEEEEeec
Q 009854 481 PGVWFMHCHL 490 (524)
Q Consensus 481 pG~w~~HCHi 490 (524)
||.|-|||-+
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999964
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.33 E-value=0.001 Score=55.20 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=49.4
Q ss_pred CcEEEEecCCEEEEEEEeCCCCCceEEe-cCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChHHHH
Q 009854 22 GPTIVAREDDTVLVKVVNHVKYNVSIHW-HGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWLR 100 (524)
Q Consensus 22 gP~i~~~~Gd~v~v~l~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~~ 100 (524)
...|.+++||+|+....|. ++++.+ .+.. .+|... ..-.+|++++++| +++|+|-|+|-.| ..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH-~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH-YG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC-cc
Confidence 3789999999988777664 455444 2211 122211 1124566666666 4689999999722 33
Q ss_pred hhceeeEEEcCCC
Q 009854 101 ATVHGAIVILPKR 113 (524)
Q Consensus 101 ~Gl~G~~iV~~~~ 113 (524)
+||.|.|+|.++.
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 8999999998854
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.28 E-value=0.0011 Score=55.50 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=53.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChHHHHhh
Q 009854 23 PTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWLRAT 102 (524)
Q Consensus 23 P~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~~~G 102 (524)
-.|++++||+ |+++|.....++++.-+.. .+ +|.- .....+|+++++.|. .+|+|-|+|-.| ..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH-~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPH-PGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEec---ccceEEEEeccC-CCCC
Confidence 4899999999 5678887778887775554 11 2221 133456688888885 499999999544 1269
Q ss_pred ceeeEEEcC
Q 009854 103 VHGAIVILP 111 (524)
Q Consensus 103 l~G~~iV~~ 111 (524)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.10 E-value=0.0024 Score=52.92 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCCcEEEEecCCEEEEEEEeC-CCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChHH
Q 009854 20 FPGPTIVAREDDTVLVKVVNH-VKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILW 98 (524)
Q Consensus 20 ~pgP~i~~~~Gd~v~v~l~N~-l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~ 98 (524)
|-...|.+++||+|+ ++|. ...++++..-+ ... .| .......+|++|++.|. ++|+|-|+|-.|
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH- 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH- 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCC-
Confidence 333689999999976 5543 34566665421 011 11 01123578999999994 689999999754
Q ss_pred HHhhceeeEEEc
Q 009854 99 LRATVHGAIVIL 110 (524)
Q Consensus 99 ~~~Gl~G~~iV~ 110 (524)
..+||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 236899999985
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.08 E-value=0.0028 Score=51.41 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=54.4
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
..+.++.|++|.|+..+ ...|.+.+ ...+ .....+..... ..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYVP----PGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEE-------eccc---ccccccccccC----ccccceecCCCCEEEEEeC--
Confidence 45788999999998653 33455443 3211 00000000000 1115667888998888877
Q ss_pred CceeEEEEeechHhhhccceEEEEEc
Q 009854 480 NPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 480 npG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
.+|.|.|+|- - |...||-..++|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 8999999999 5 9999999999985
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.62 E-value=0.0083 Score=63.52 Aligned_cols=79 Identities=16% Similarity=0.410 Sum_probs=59.8
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
..+.++.|+.|++.+.|.....+..|-|-+-++.. -+.+.||....+.|+++
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~ad 606 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTAD 606 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcC
Confidence 34778999999999999643346778877754421 13456889999999999
Q ss_pred CceeEEEEeechHhh-hccceEEEEEcC
Q 009854 480 NPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 480 npG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
.||.|.+||...-|. +.+|...+.|++
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999874433 348888888864
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.31 E-value=0.015 Score=47.64 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=40.7
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
..+.++.|+.+.+++.|.+ ...|-|.+-+. .-...|++|+...+.|.++
T Consensus 35 ~~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~----------------------------~~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNND---SRPHEFVIPDL----------------------------GISKVLPPGETATVTFTPL 83 (104)
T ss_dssp -EEEEETTCEEEEEEEE-S---SS-EEEEEGGG----------------------------TEEEEE-TT-EEEEEEEE-
T ss_pred CEEEEcCCCeEEEEEEECC---CCcEEEEECCC----------------------------ceEEEECCCCEEEEEEcCC
Confidence 3578999999999999965 33344444431 1136789999999999999
Q ss_pred CceeEEEEeechHh
Q 009854 480 NPGVWFMHCHLEVH 493 (524)
Q Consensus 480 npG~w~~HCHil~H 493 (524)
.||.|-|+|-+-.+
T Consensus 84 ~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 84 KPGEYEFYCTMHPN 97 (104)
T ss_dssp S-EEEEEB-SSS-T
T ss_pred CCEEEEEEcCCCCc
Confidence 99999999995443
No 60
>PRK02710 plastocyanin; Provisional
Probab=96.10 E-value=0.028 Score=47.22 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=50.8
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
..+.++.|++|+|+ |.+ ...|.+.+.+... +. .+ ...+.+|+...+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~~--------------~~-~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------LS--------------HK-DLAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------cc--------------cc-ccccCCCCEEEEEecC-
Confidence 35788999999986 422 4567776542110 00 01 2346788887777764
Q ss_pred CceeEEEEeechHhhhccceEEEEEc
Q 009854 480 NPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 480 npG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
||.|.|+|= -|...||-..+.|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999996 89999999999884
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.37 E-value=0.1 Score=43.37 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=29.8
Q ss_pred CCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEcCC
Q 009854 468 SGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNG 507 (524)
Q Consensus 468 p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 507 (524)
++....+. ++.+|.|-|+|= .|...||-..++|.++
T Consensus 54 ~g~~~~~t--F~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEEYTVT--VTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEE--eCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 45555544 478999999998 9999999999999874
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.068 Score=45.93 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=54.5
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEc------CceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEE
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIA------GHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLV 249 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~------gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~ 249 (524)
..++++.|+++|+-+-|.+ .--|.|-+. +|.-..+..|- .+-...+++.|.||+..++.+++.+ +|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~-el~hef~~~~~~~~~~~~~~~~~~~D--me~d~~~~v~L~PG~s~elvv~ft~-~g~ye~ 138 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEG-ELKHEFTMDAPDKNLEHVTHMILADD--MEHDDPNTVTLAPGKSGELVVVFTG-AGKYEF 138 (158)
T ss_pred CcccccCCcEEeeeecCcc-cceEEEeccCccccchhHHHhhhCCc--cccCCcceeEeCCCCcEEEEEEecC-CccEEE
Confidence 4579999999999999999 677777776 11111111121 1223457999999999999999998 599999
Q ss_pred EEee
Q 009854 250 AASP 253 (524)
Q Consensus 250 ~~~~ 253 (524)
.|..
T Consensus 139 ~C~i 142 (158)
T COG4454 139 ACNI 142 (158)
T ss_pred EecC
Confidence 9963
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.083 Score=45.41 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=42.5
Q ss_pred CceeEecCCcEEEEEEEeCCceeEEEEeechHhhhccceEEEEEc
Q 009854 461 RNTIGVPSGGWTAIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 461 rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
..++.|.||.+..+-+.+.++|.|-|-|=|-+|-+.||-..|.|.
T Consensus 113 ~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 113 PNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cceeEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 468999999999999999999999999999999999999999885
No 64
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.13 E-value=0.37 Score=37.48 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=45.1
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
..+.+..|++|.|+ |. +...|..+.....+ +..+ +. ...+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~---d~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NR---EAMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--EC---CCCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECC
Confidence 35788999999985 42 24568887653211 0000 11 11234555544 5567
Q ss_pred CceeEEEEeechHhhhccceEEEEEc
Q 009854 480 NPGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 480 npG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
.||.|.|||=+ |- .|-..++|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999986 44 588888774
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.11 E-value=0.22 Score=41.37 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=55.1
Q ss_pred CcEEEEec-CCEEEEEEEeCCCCCceEEecCc--------------------cccCCCCCC-CCCccccccCCCCCceEE
Q 009854 22 GPTIVARE-DDTVLVKVVNHVKYNVSIHWHGV--------------------RQLRTCWAD-GPAYITQCPIQPGQNYIY 79 (524)
Q Consensus 22 gP~i~~~~-Gd~v~v~l~N~l~~~~~iH~HG~--------------------~~~~~~~~D-G~~~~~q~~i~PG~~~~y 79 (524)
=..|.|.. |.+|.|+|.|....+-..--|-+ .....+..| -+...| ..|.|||+.+.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhT-kliggGes~sv 93 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHT-KVIGGGEKTSV 93 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEc-cccCCCceEEE
Confidence 36899998 58999999998543322222211 100011011 111112 35889999999
Q ss_pred EEEeCC-cccc-eeeccChHHHHhhceeeEE
Q 009854 80 NFTLAG-QRGT-LWWHAHILWLRATVHGAIV 108 (524)
Q Consensus 80 ~~~~~~-~~Gt-~wyH~H~~~~~~Gl~G~~i 108 (524)
+|+++. ++|+ |-|-|-..+....|.|.+.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 999832 5786 9999999888888888875
No 66
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.49 E-value=0.6 Score=38.72 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=47.1
Q ss_pred EEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeCC
Q 009854 401 IYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRADN 480 (524)
Q Consensus 401 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 480 (524)
.+.++.|++|.|+-... ...|-.. ..+.+.|+.. .....+|+...+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s~---------------~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDES---------------ERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCcccc---------------ccccCCCCEEEEEe--cC
Confidence 57889999999985431 2234432 2222233210 11234566655555 78
Q ss_pred ceeEEEEeechHhhhccceEEEEEc
Q 009854 481 PGVWFMHCHLEVHTTWGLKMAFIVD 505 (524)
Q Consensus 481 pG~w~~HCHil~H~d~GM~~~~~V~ 505 (524)
||.|.|+|= .|...||-..++|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999997 89999999999884
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.01 E-value=1.4 Score=36.97 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=48.6
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.++.|+.++|++.+.. -.|.|.+.+..+++ .+-||+.-.+-+++++ ||.|.++|..+.
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~~-~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIKM----------------DAIPGRTNSVTFTPDK-PGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEEE----------------EEBTTCEEEEEEEESS-SEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCccc----------------ccccccceeeeeeecc-CCcEEEcCcccc
Confidence 5799999999999999855 68888888665443 3458999999999987 699999998664
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 107 G 107 (120)
T PF00116_consen 107 G 107 (120)
T ss_dssp S
T ss_pred C
Confidence 4
No 68
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.45 E-value=1.9 Score=38.94 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=60.0
Q ss_pred CceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCC---CCCCCC--CCCCCcCceeEecCCcEE
Q 009854 398 GTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKK---DPKKFN--LVDPVERNTIGVPSGGWT 472 (524)
Q Consensus 398 ~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~---~~~~~~--~~~p~~rDTv~vpp~g~v 472 (524)
+...+.++.|-.|.+++.|.+ .+. |.|-|+..+....+... |.+-+. ...+.-=..=-|.+|...
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~---~l~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQE---SLP-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCC---CCC-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 445678899999999999965 344 46677755422111100 000000 000000000012345555
Q ss_pred EEEEEeCCceeEEEEeechHhhhccceEEEEEcCC
Q 009854 473 AIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNG 507 (524)
Q Consensus 473 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 507 (524)
..-+..-.+|.|.+=|=|.-|...||-..|.|-+.
T Consensus 154 ~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 154 SGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 55565556999999999999999999999998764
No 69
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.90 E-value=3.5 Score=36.64 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=59.1
Q ss_pred CceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCC-CCCCCC--CCCCCCC--CCCCcCceeEecCCcEE
Q 009854 398 GTRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLG-NFNSKK--DPKKFNL--VDPVERNTIGVPSGGWT 472 (524)
Q Consensus 398 ~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~~--~~~~~~~--~~p~~rDTv~vpp~g~v 472 (524)
+...+-++.|-.|.+++.|.. ...| .+-++..+.. ++.+.- |.+..+. ..+.--..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 456788999999999999964 3444 4445544321 111100 1110000 00000000012244555
Q ss_pred EEEEEeCCceeEEEEeechHhhhccceEEEEEcCC
Q 009854 473 AIRFRADNPGVWFMHCHLEVHTTWGLKMAFIVDNG 507 (524)
Q Consensus 473 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 507 (524)
-.-+..-.||.|.+=|-+.-|...||-..+.|-..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 56666678999999999999999999999988654
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.90 E-value=3.2 Score=34.75 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=52.9
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+.+ .+..|.|.+-..... +.+-||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS----~DViHsf~ip~~~~k----------------------------~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTS----EDVIHSFWIPELGIK----------------------------MDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEE----SSS-EEEEETTCTEE----------------------------EEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEc----CCccccccccccCcc----------------------------cccccccceeeeeee
Confidence 456899999999999998 466788887654332 234578888899999
Q ss_pred CCceeEEEEeechHhh-hccceEEEEE
Q 009854 479 DNPGVWFMHCHLEVHT-TWGLKMAFIV 504 (524)
Q Consensus 479 dnpG~w~~HCHil~H~-d~GM~~~~~V 504 (524)
+.||.|-..|..+=.. +.-|...+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999876544 3445555544
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=89.59 E-value=3.5 Score=31.89 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=39.0
Q ss_pred EEEEEEEecCCCCeEEEEEc-Cce--eeEEEecCccc------ce--eEecEEEeCCCceEEEEEEeCCC---CCceEEE
Q 009854 185 TYMLRLINAALNEELFFKIA-GHK--LTVVEVDAAYV------KP--FKTETVLIAPGQTTNVLLSAAHA---TGKYLVA 250 (524)
Q Consensus 185 ~~rlRliN~~~~~~~~~~l~-gh~--~~via~DG~~~------~P--~~~d~v~l~pgeR~dv~v~~~~~---~g~~~~~ 250 (524)
.+.|++.|.+ .....|.+. |++ |.|...+|..+ +. +......|.|||...+-.+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3578888888 677777765 554 44555577665 11 34578999999999999998874 6899876
Q ss_pred E
Q 009854 251 A 251 (524)
Q Consensus 251 ~ 251 (524)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 72
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=86.60 E-value=3.7 Score=34.63 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=46.1
Q ss_pred EEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeCC
Q 009854 401 IYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRADN 480 (524)
Q Consensus 401 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 480 (524)
.++++.|++|+|+-.. ...|..+.=+-. .|..-+++....+.....-| +-
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~Tf--e~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHTF--ET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEEe--cc
Confidence 4688899999998432 224554432211 11112233333345555555 44
Q ss_pred ceeEEEEeechHhhhccceEEEEEcC
Q 009854 481 PGVWFMHCHLEVHTTWGLKMAFIVDN 506 (524)
Q Consensus 481 pG~w~~HCHil~H~d~GM~~~~~V~~ 506 (524)
||.|.|.| ..|...||-..+.|++
T Consensus 105 ~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEe--ccCCCCCcEEEEEeCC
Confidence 99999999 4688999999999863
No 73
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.98 E-value=3 Score=38.45 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=55.4
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
+.+.++.|+.|++.+.+. +..|.|.+-+... .+| +-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~~-------------------------k~d---a~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPELGG-------------------------KID---AIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccccCc-------------------------eEE---ecCCcEEEEEEEeC
Confidence 467899999999999873 4556655533211 123 34788888999999
Q ss_pred CceeEEEEeechHhh-hccceEEEEEcCCC
Q 009854 480 NPGVWFMHCHLEVHT-TWGLKMAFIVDNGK 508 (524)
Q Consensus 480 npG~w~~HCHil~H~-d~GM~~~~~V~~~~ 508 (524)
.||.|...|-..-.. +..|...++|.+++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECHH
Confidence 999999999984322 37888888887643
No 74
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.89 E-value=46 Score=34.39 Aligned_cols=176 Identities=16% Similarity=0.297 Sum_probs=98.9
Q ss_pred EEEecCCE--EEEEEEeCCC--CCceEEecCccccC-CCCCCCCCccccccCCCCCceEEEEEe----CCcccceeeccC
Q 009854 25 IVAREDDT--VLVKVVNHVK--YNVSIHWHGVRQLR-TCWADGPAYITQCPIQPGQNYIYNFTL----AGQRGTLWWHAH 95 (524)
Q Consensus 25 i~~~~Gd~--v~v~l~N~l~--~~~~iH~HG~~~~~-~~~~DG~~~~~q~~i~PG~~~~y~~~~----~~~~Gt~wyH~H 95 (524)
+.+.++++ +.|++.|+-. +...+-.-|+.-.. ..+-+|.--++...+.||++.+....+ +-.+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 45555665 6788889874 44455555554211 123466666788889999999998888 2235665
Q ss_pred hHHHHhhceeeEEEcCCCCCCCCCCCCCccEEEEeceeecccHHHHHHHHHhcCCCCCCCceEEEcCCCCCCCCCCCCCc
Q 009854 96 ILWLRATVHGAIVILPKRGVPYPFPKPHKEVTVILSEWWKSDVEAVINEALKSGLAPNVSDAHTINGHPGPLSSCPSQGG 175 (524)
Q Consensus 96 ~~~~~~Gl~G~~iV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~ 175 (524)
.+.|.-.... ...++.++-+.-- |. .....-+-||.
T Consensus 353 ----------nv~I~A~s~s-----~v~~e~~lki~~~---------------g~--~~~~v~l~~g~------------ 388 (513)
T COG1470 353 ----------NVTITASSSS-----GVTRELPLKIKNT---------------GS--YNELVKLDNGP------------ 388 (513)
T ss_pred ----------eEEEEEeccc-----cceeeeeEEEEec---------------cc--cceeEEccCCc------------
Confidence 3333322211 1244555544320 10 00122233554
Q ss_pred eeEEEecCC--EEEEEEEecCCCC--eEEEEEcCceeeEEEecCcccceeEecEEEeCCCceE--EEEEEeCCC--CCce
Q 009854 176 FKLPVESGK--TYMLRLINAALNE--ELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTT--NVLLSAAHA--TGKY 247 (524)
Q Consensus 176 p~~~v~~G~--~~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~--dv~v~~~~~--~g~~ 247 (524)
..+++.+|+ .+++++-|.|+.. ...+.+.+-+=+-+.+|+.. .+. |.||+|- ++-++++.+ +|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~-----I~s--L~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDEST-----IPS--LEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccc-----ccc--cCCCCcceEEEEEEcCCCCCCCcE
Confidence 458888886 6789999999544 34555555444555556542 232 4556554 444555542 4899
Q ss_pred EEEEeeCCC
Q 009854 248 LVAASPFLD 256 (524)
Q Consensus 248 ~~~~~~~~~ 256 (524)
.+......|
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 988775444
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=85.10 E-value=5.3 Score=33.37 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=51.8
Q ss_pred eeEEEec-CCEEEEEEEecCCC----CeEEEEEc-CceeeEEE-------ecCcccce----eEecEEEeCCCceEEEEE
Q 009854 176 FKLPVES-GKTYMLRLINAALN----EELFFKIA-GHKLTVVE-------VDAAYVKP----FKTETVLIAPGQTTNVLL 238 (524)
Q Consensus 176 p~~~v~~-G~~~rlRliN~~~~----~~~~~~l~-gh~~~via-------~DG~~~~P----~~~d~v~l~pgeR~dv~v 238 (524)
..|+|++ ++.+++.|-|.+.. ..|++-|- .-.+.-++ .|-+++++ +...|=+|++||..+|-|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 5689998 48899999999842 24554442 11222222 24445533 244677999999999999
Q ss_pred EeCC-CCC-ceEEEEe
Q 009854 239 SAAH-ATG-KYLVAAS 252 (524)
Q Consensus 239 ~~~~-~~g-~~~~~~~ 252 (524)
+++. .+| +|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9874 356 5999996
No 76
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=79.46 E-value=4 Score=41.45 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=51.0
Q ss_pred cEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChH--HHH
Q 009854 23 PTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHIL--WLR 100 (524)
Q Consensus 23 P~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~--~~~ 100 (524)
-++.|++||.|.+.++|-....-.+ ||.-.+ .-|+. ..+.|-++-.|.|.+ +.+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeec----cCceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 4778888888888888865433333 333222 11221 347888999999998 8899999987432 223
Q ss_pred hhceeeEEEc
Q 009854 101 ATVHGAIVIL 110 (524)
Q Consensus 101 ~Gl~G~~iV~ 110 (524)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 6677778876
No 77
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=79.24 E-value=12 Score=37.95 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=56.2
Q ss_pred EEEcC-cCCCcEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCC-ccccccCCCCCceEEEEEeCCccccee
Q 009854 14 VTVNG-YFPGPTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPA-YITQCPIQPGQNYIYNFTLAGQRGTLW 91 (524)
Q Consensus 14 ~~~NG-~~pgP~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~-~~~q~~i~PG~~~~y~~~~~~~~Gt~w 91 (524)
+++++ ++--..+.+..|+ +.+.++|....++..-. + +|+- .-....|.||.+..+.+++ .+|+|-
T Consensus 34 Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~--~--------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~ 100 (375)
T PRK10378 34 VTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKALEWEI--L--------KGVMVVEERENIAPGFSQKMTANL--QPGEYD 100 (375)
T ss_pred EEEECCccccCceeeCCCC-EEEEEEeCCCCcceEEe--e--------ccccccccccccCCCCceEEEEec--CCceEE
Confidence 45544 5655699999996 89999999766543211 1 1110 0012459999999988776 599999
Q ss_pred eccChHHHHhhceeeEEEcCCC
Q 009854 92 WHAHILWLRATVHGAIVILPKR 113 (524)
Q Consensus 92 yH~H~~~~~~Gl~G~~iV~~~~ 113 (524)
|+|-.+ ..+.|.|+|....
T Consensus 101 ~~C~~~---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 101 MTCGLL---TNPKGKLIVKGEA 119 (375)
T ss_pred eecCcC---CCCCceEEEeCCC
Confidence 999432 3358899998653
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=78.26 E-value=4.5 Score=31.30 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=29.4
Q ss_pred EEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCc---cccccCCCCCceEEEEEeCCc---ccceee
Q 009854 24 TIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAY---ITQCPIQPGQNYIYNFTLAGQ---RGTLWW 92 (524)
Q Consensus 24 ~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~---~~q~~i~PG~~~~y~~~~~~~---~Gt~wy 92 (524)
+|+..-|++..+.|.|...+. + -.|++|... +....|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 555555666555555442111 1 136777543 234568999999999999433 688753
No 79
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=78.04 E-value=4.6 Score=37.24 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred cEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccCh-HHHH-
Q 009854 23 PTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHI-LWLR- 100 (524)
Q Consensus 23 P~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~-~~~~- 100 (524)
..|.+..|+.|++++++.. .+ ||..++.- |+ +.-+-||..-...|++ +++|+|...|.. .|..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999853 22 56554321 11 1336689988888987 899999999864 2333
Q ss_pred hhceeeEEEcCCC
Q 009854 101 ATVHGAIVILPKR 113 (524)
Q Consensus 101 ~Gl~G~~iV~~~~ 113 (524)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7788888887654
No 80
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.49 E-value=6.4 Score=37.45 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=56.3
Q ss_pred cEEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccCh-HHHH-
Q 009854 23 PTIVAREDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHI-LWLR- 100 (524)
Q Consensus 23 P~i~~~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~-~~~~- 100 (524)
..|.+..|.+|+++++-. +.- ||..++.-+ . +.-.-||...++.+++ +++|+|.-.|+. .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~-------~-k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG-------G-KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC-------c-eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998876 222 344333210 0 1236689889999987 899999999874 3444
Q ss_pred hhceeeEEEcCCCC
Q 009854 101 ATVHGAIVILPKRG 114 (524)
Q Consensus 101 ~Gl~G~~iV~~~~~ 114 (524)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998764
No 81
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=69.16 E-value=15 Score=29.30 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=42.6
Q ss_pred EEecCCEEEEEEE--ecCCCCeEEEEEcCceeeEEEecCcccceeEecEE-EeCCCceEEEEEEeCCCC--CceEEEEee
Q 009854 179 PVESGKTYMLRLI--NAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETV-LIAPGQTTNVLLSAAHAT--GKYLVAASP 253 (524)
Q Consensus 179 ~v~~G~~~rlRli--N~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v-~l~pgeR~dv~v~~~~~~--g~~~~~~~~ 253 (524)
.-+|||++.+|.+ +... ......-....++|...+|..+ ....+ .......++.-+..++.+ |.|.|++..
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4689999999999 6652 1111111122356667666643 22233 457788889889888754 999999875
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=62.95 E-value=45 Score=26.02 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=40.8
Q ss_pred CcEEEEe---cCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeec
Q 009854 22 GPTIVAR---EDDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWH 93 (524)
Q Consensus 22 gP~i~~~---~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH 93 (524)
.|.+.++ ....|+|+|.|....+..+........ .+ ...+..|+||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~--~~~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GG--GPWTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CC--CCEEEEECCCCEEEEEEeec--CCCCcEE
Confidence 4556655 245899999999888777776653221 11 11345699999999999872 3334554
No 83
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=60.32 E-value=80 Score=24.62 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=41.1
Q ss_pred EEecCCEE--EEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEE-EeCCCceEEEEEEeCC-CCCceEEEEee
Q 009854 179 PVESGKTY--MLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETV-LIAPGQTTNVLLSAAH-ATGKYLVAASP 253 (524)
Q Consensus 179 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v-~l~pgeR~dv~v~~~~-~~g~~~~~~~~ 253 (524)
.+.+|+.+ .+.+.|.|....-.+.+. +-.||..+ ....| .|.+|+...+-|.... .+|.|.+.+..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 56677765 578899986654444443 33466544 44455 8899999988888765 46899888764
No 84
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=59.37 E-value=47 Score=24.41 Aligned_cols=65 Identities=14% Similarity=0.328 Sum_probs=36.1
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEe
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAAS 252 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~ 252 (524)
..+++++|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.+.+.+ +|+|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 57899999999999877774 222455555554331111111 111222333344544 599998864
No 85
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=58.93 E-value=34 Score=32.57 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=53.9
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
+-+.++.|+.|++.+.. .+..|.|.+-+-.++ +.+-||-...+.++++
T Consensus 137 n~l~lPv~~~V~f~ltS----~DViHsF~IP~l~~k----------------------------~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 137 NELVLPVGRPVRFKLTS----ADVIHSFWIPQLGGK----------------------------IDAIPGMTTELWLTAN 184 (247)
T ss_pred ceEEEeCCCeEEEEEEe----chhceeEEecCCCce----------------------------eeecCCceEEEEEecC
Confidence 45788999999999876 355565555533221 2234566778899999
Q ss_pred CceeEEEEeechHhh-hccceEEEEEcCCCC
Q 009854 480 NPGVWFMHCHLEVHT-TWGLKMAFIVDNGKG 509 (524)
Q Consensus 480 npG~w~~HCHil~H~-d~GM~~~~~V~~~~~ 509 (524)
.+|.|-.+|+..-=. +..|-..+.|...++
T Consensus 185 ~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 185 KPGTYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred CCeEEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 999999999988744 445556666665443
No 86
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.31 E-value=44 Score=30.61 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=44.8
Q ss_pred eEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCC
Q 009854 177 KLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLD 256 (524)
Q Consensus 177 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~ 256 (524)
.+.+..|+.+||++--.. -.|.|.+.+...+ +..-||..-.+.+.+++ +|.|...|..+..
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~~-~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPDR-HGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcCC-CEEEEEEeehhhC
Confidence 478999999999886554 5666666544322 23348999999998887 6999999986644
No 87
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.28 E-value=1.2e+02 Score=27.70 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=53.8
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
+.+.++.|+.+++.+.. .+..|.|.+-.... .+|.+ ||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS----~DViHsf~vp~l~~-------------------------k~d~~---PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTS----SDVIHSFSVPDLNL-------------------------KMDAI---PGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeec----CccccceeccccCc-------------------------eeecC---CCceEEEEEEcC
Confidence 45788999999999875 45667776653321 23443 677888999999
Q ss_pred CceeEEEEeechHhh-hccceEEEEEcC
Q 009854 480 NPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 480 npG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
.+|.|-.-|.-+-=. +..|-..++|.+
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 999999999877644 456666666654
No 88
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.04 E-value=57 Score=30.72 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=54.6
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+.+ .+..|.|.+=.... ..| +-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts----~DViHsf~ip~~~~-------------------------k~d---~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTS----ADVIHSWTVPSLGV-------------------------KVD---AIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEc----CccccceeccccCc-------------------------eeE---CCCCcceeEEEEe
Confidence 356789999999999987 35666666543221 122 2367777788999
Q ss_pred CCceeEEEEeechHhh-hccceEEEEEcCC
Q 009854 479 DNPGVWFMHCHLEVHT-TWGLKMAFIVDNG 507 (524)
Q Consensus 479 dnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 507 (524)
+.||.|...|.-+-.. +..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 9999999999987765 5666666766553
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.07 E-value=57 Score=30.71 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=46.0
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++.+.. -.|.|.+.+...+ +..-||..-.+.+.+++ ||.|...|..+.
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~~-~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSLGVK----------------VDAIPGRLNQLSFEPKR-PGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceeccccCce----------------eECCCCcceeEEEEeCC-CEEEEEECcccc
Confidence 4689999999999998855 4566666544333 33448888889998887 699999998654
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 201 G 201 (228)
T MTH00140 201 G 201 (228)
T ss_pred C
Confidence 3
No 90
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=49.13 E-value=48 Score=27.00 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEEEEEeCCcccceeeccChHHHHhhceeeEEEcCC
Q 009854 34 LVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIYNFTLAGQRGTLWWHAHILWLRATVHGAIVILPK 112 (524)
Q Consensus 34 ~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wyH~H~~~~~~Gl~G~~iV~~~ 112 (524)
.|+++|.|.....|..|=-.-. .| .+. ..+.||+++...|.. +--|+-.|.|+...........+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~D--lg~--~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DD--LGW--HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----cc--CCC--EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965555555543311 12 122 358999999999986 4557777888765411113445555433
No 91
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=48.11 E-value=1.2e+02 Score=30.94 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=42.5
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEee
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASP 253 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~ 253 (524)
..+++++|+ ++|.+.|.+. .... |+++ +|+.+ ....=.|+||.+..+.+.+. ||+|.+.|.+
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~-~~~E-------fe~~--~~~~v---v~e~EnIaPG~s~~l~~~L~--pGtY~~~C~~ 105 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQ-KALE-------WEIL--KGVMV---VEERENIAPGFSQKMTANLQ--PGEYDMTCGL 105 (375)
T ss_pred CceeeCCCC-EEEEEEeCCC-Ccce-------EEee--ccccc---cccccccCCCCceEEEEecC--CceEEeecCc
Confidence 678999996 9999999993 4433 3443 22211 01123889998888877763 7999999953
No 92
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=46.06 E-value=35 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=28.8
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeeEEEecCccc--c--eeEecEEEeCCCceEEE
Q 009854 185 TYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV--K--PFKTETVLIAPGQTTNV 236 (524)
Q Consensus 185 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~--P~~~d~v~l~pgeR~dv 236 (524)
.|++||-|.+.. .+.|-...+.|...||... + -+....=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 478999999954 4677778888887777532 1 12224557888886543
No 93
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=44.93 E-value=56 Score=27.62 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=33.7
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeeEEEecCccc----ceeEecEEEeCCCceEEE
Q 009854 185 TYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV----KPFKTETVLIAPGQTTNV 236 (524)
Q Consensus 185 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~----~P~~~d~v~l~pgeR~dv 236 (524)
.|++||.|.+. ..+.|-...|.+...||... +.+....=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~---~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGR---VPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCC---CCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 47899999883 24678888899988888632 123344557788876553
No 94
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=44.79 E-value=1.5e+02 Score=23.05 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=38.1
Q ss_pred CEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEe
Q 009854 184 KTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAAS 252 (524)
Q Consensus 184 ~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~ 252 (524)
..++|.|.|.+ .....|.+.... + ......++.|.+|++.++.+.....-|-|-+..+
T Consensus 20 g~l~l~l~N~g-~~~~~~~v~~~~---------y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPG-SAAVTFTVYDNA---------Y-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCC-CCcEEEEEEeCC---------c-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 36899999998 555555544311 1 1122367888899998888887554466777665
No 95
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=44.10 E-value=1.6e+02 Score=24.79 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=43.1
Q ss_pred EEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccc-------ceeEecEEEeCCCceEEEEEEeCCC
Q 009854 178 LPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV-------KPFKTETVLIAPGQTTNVLLSAAHA 243 (524)
Q Consensus 178 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-------~P~~~d~v~l~pgeR~dv~v~~~~~ 243 (524)
|++..-..|+|++.. .....|.|+|.. |++.++..- .+....++.|..|++++|-|...+.
T Consensus 54 ~~~~~~G~y~f~~~~---~d~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTS---DDGARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEE---SSEEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEe---cccEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 566666679999983 345777898887 566665432 3566788999999999999987664
No 96
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=43.85 E-value=18 Score=28.97 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=28.8
Q ss_pred EEEEcCcCCCcEEEEecCCEEEEEEEeCCCCCceE
Q 009854 13 IVTVNGYFPGPTIVAREDDTVLVKVVNHVKYNVSI 47 (524)
Q Consensus 13 ~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~~i 47 (524)
-+.+||+.--|-=.|+.||.|+|++.|..-.-..+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 47899998789999999999999999986444333
No 97
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=43.54 E-value=1.5e+02 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.0
Q ss_pred EEecCCEEEEEEEecCCCCeEEEEE
Q 009854 179 PVESGKTYMLRLINAALNEELFFKI 203 (524)
Q Consensus 179 ~v~~G~~~rlRliN~~~~~~~~~~l 203 (524)
..+.||+++|++-..-.....-|.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred cccCCCEEEEEEEeCCCeEEEEEEE
Confidence 3567888888887754333333433
No 98
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=42.71 E-value=72 Score=30.00 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=42.9
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++-.... .|.|.+. ...-....-||..-.+-+++++ ||.|...|..+.
T Consensus 139 nel~lP~g~pV~~~ltS~DV--iHSF~VP----------------~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV--MNSFFIP----------------QLGSQIYAMAGMQTKLHLIANE-PGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECch--hhhhhhh----------------hcCCeeecCCCceEEEEEEeCC-CEEEEEEchhhc
Confidence 46788888888887766553 3444433 2233334448988899999987 699999998765
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 4
No 99
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=40.68 E-value=1.8e+02 Score=22.93 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=37.1
Q ss_pred EEecCCEE--EEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeC-C-CCCceEE
Q 009854 179 PVESGKTY--MLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAA-H-ATGKYLV 249 (524)
Q Consensus 179 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~-~-~~g~~~~ 249 (524)
.+..|++| .+.|.|.| .....|++.-.. .....+. .....-.|+||+..++.|.+. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s-~~p~~f~v~~~~-----~~~~~~~-v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTS-SIPARFRVRQPE-----SLSSFFS-VEPPSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECC-CCCEEEEEEeCC-----cCCCCEE-EECCCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 55667766 59999999 455556554211 0011110 011234699999999999987 3 3466543
No 100
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.79 E-value=1e+02 Score=29.08 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=43.9
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++.+.. -.|.|.+.+...+ +..-||..-.+.+.+++ +|.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCcc----------------eecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 4678888999998888755 4566665544433 22337888888888887 699999998654
No 101
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=39.53 E-value=1e+02 Score=25.91 Aligned_cols=54 Identities=13% Similarity=0.328 Sum_probs=43.3
Q ss_pred EEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCC
Q 009854 186 YMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHA 243 (524)
Q Consensus 186 ~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~ 243 (524)
+.|-+.|++....+.+ .+......+|.+++.+..+.+.|.|=+..+++|+-++.
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~ 80 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDT 80 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccC
Confidence 4677888886666554 34557788999999999999999999999999987654
No 102
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=39.52 E-value=1.6e+02 Score=26.08 Aligned_cols=61 Identities=8% Similarity=0.111 Sum_probs=42.2
Q ss_pred eEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCC
Q 009854 177 KLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLD 256 (524)
Q Consensus 177 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~ 256 (524)
.+.+..|+.+||++.-+. -.|.|.+......+= .-||..-.+.+.+.. +|.|...|..+..
T Consensus 74 ~LvLP~g~~Vr~~lTS~D--VIHSF~VP~lgvK~D----------------avPGr~n~l~~~~~~-~G~y~gqCsElCG 134 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD--VIHSWSVPSLGIKAD----------------AIPGRLHKINTFILR-EGVFYGQCSEMCG 134 (162)
T ss_pred CEEEeCCCEEEEEEEeCc--cceeeeccccCceee----------------ccCCceEEEEEecCC-CeEEEEEcchhcC
Confidence 478899998888776655 457777665543332 226766677777776 6999999986543
No 103
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=38.01 E-value=2.2e+02 Score=24.26 Aligned_cols=72 Identities=19% Similarity=0.417 Sum_probs=38.2
Q ss_pred ceEEEcCCCCCCCCCCCCCceeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccce--eEecEEEeCCCce
Q 009854 156 DAHTINGHPGPLSSCPSQGGFKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKP--FKTETVLIAPGQT 233 (524)
Q Consensus 156 ~~~~iNG~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P--~~~d~v~l~pgeR 233 (524)
-.+.++|..+ -++..|+-+ +++.-.+ +++|..++.+-..-.=+++| +.+.....-||..
T Consensus 56 aTf~i~~ntg------------~tIs~Gk~V-IeV~y~g------i~ihsethDLCdetsCPVepG~f~~~hsq~LPg~t 116 (153)
T KOG4680|consen 56 ATFSISGNTG------------ETISEGKYV-IEVSYGG------IRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYT 116 (153)
T ss_pred cEEEEecccc------------cEeeCCeEE-EEEEEee------EEEeeccccccccccCCcCcCceeeeeeEeccCcC
Confidence 3577777654 245555533 5544333 45555554444333334444 3334444445443
Q ss_pred EEEEEEeCCCCCceEEEEeeCC
Q 009854 234 TNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 234 ~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
+||+|.+.+.+++
T Consensus 117 ---------PPG~Y~lkm~~~d 129 (153)
T KOG4680|consen 117 ---------PPGSYVLKMTAYD 129 (153)
T ss_pred ---------CCceEEEEEEeec
Confidence 6799988887664
No 104
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=36.74 E-value=88 Score=29.17 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=42.4
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++-.... .|.|.+ |...-....-||..-.+-+++++ +|.|...|..+.
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~v----------------P~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWI----------------PQLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhc----------------hhhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 35677888877777765552 444433 33333344458999999999987 699999998664
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 191 G 191 (217)
T TIGR01432 191 G 191 (217)
T ss_pred C
Confidence 4
No 105
>PRK13202 ureB urease subunit beta; Reviewed
Probab=36.56 E-value=96 Score=24.98 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=38.9
Q ss_pred EEEEecC--CEEEEEEEeCCCCCce--EEecCccccCCCCCC-----C----CCccccccCCCCCceEEEEE
Q 009854 24 TIVARED--DTVLVKVVNHVKYNVS--IHWHGVRQLRTCWAD-----G----PAYITQCPIQPGQNYIYNFT 82 (524)
Q Consensus 24 ~i~~~~G--d~v~v~l~N~l~~~~~--iH~HG~~~~~~~~~D-----G----~~~~~q~~i~PG~~~~y~~~ 82 (524)
.|.+++| ++++|++.|..+.|.- -|+|=.++...-..| | .|.-|..-+.||++.+.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4899999 5999999999987765 477766654432122 1 22223345678888777764
No 106
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=36.37 E-value=85 Score=29.52 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=52.8
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
+-+.++.|+.+++.+.. .+..|.|. |-+-+ ..+|.+ ||-...+.|+++
T Consensus 139 nel~lP~g~pV~~~ltS----~DViHSF~-------VP~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITS----NSVMNSFF-------IPQLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEE----Cchhhhhh-------hhhcC------------------CeeecC---CCceEEEEEEeC
Confidence 34688999999999986 34555544 43322 235555 677788899999
Q ss_pred CceeEEEEeechHhh-hccceEEEEEcCC
Q 009854 480 NPGVWFMHCHLEVHT-TWGLKMAFIVDNG 507 (524)
Q Consensus 480 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 507 (524)
.||.|.-.|--.-=. +..|...++|.+.
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 999999999755433 3667777776553
No 107
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=35.77 E-value=2e+02 Score=25.35 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=50.3
Q ss_pred eEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeC
Q 009854 400 RIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRAD 479 (524)
Q Consensus 400 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 479 (524)
+.+.++.|..+++.+.. .+..|.|.+-.... ..|.+ ||-...+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS----~DVIHSF~VP~lgv-------------------------K~Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITA----TDVIHSWSVPSLGI-------------------------KADAI---PGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEe----CccceeeeccccCc-------------------------eeecc---CCceEEEEEecC
Confidence 45678899999998876 35667766653311 23332 566677888999
Q ss_pred CceeEEEEeechHhh-hccceEEEEEcC
Q 009854 480 NPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 480 npG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
.+|.|...|.-+-=. +..|-..+.|..
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 999999999866532 234555555543
No 108
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=35.48 E-value=30 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=23.0
Q ss_pred ccEEEEcCcCCCcEEEEecCCEEEEE
Q 009854 11 KPIVTVNGYFPGPTIVAREDDTVLVK 36 (524)
Q Consensus 11 ~~~~~~NG~~pgP~i~~~~Gd~v~v~ 36 (524)
...+.+||+.-++.-+++.||+|.|.
T Consensus 49 V~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 49 VGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred eEEEEECCEECCCcccCCCCCEEEEE
Confidence 45789999998999999999999874
No 109
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=34.93 E-value=1.5e+02 Score=24.71 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=42.3
Q ss_pred EEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccce----eEecEEEeCCCceEEEEEEeCC--CCCceEEEE
Q 009854 178 LPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKP----FKTETVLIAPGQTTNVLLSAAH--ATGKYLVAA 251 (524)
Q Consensus 178 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P----~~~d~v~l~pgeR~dv~v~~~~--~~g~~~~~~ 251 (524)
-.+..|+.+++++-=........+. -.+.+...+|..+-- .....+....++++.+.+.++. .+|+|.+.+
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v 105 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISV 105 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEE
Confidence 3578899988888766644443333 345666777765521 1123455555899999988886 379999987
Q ss_pred ee
Q 009854 252 SP 253 (524)
Q Consensus 252 ~~ 253 (524)
.-
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 110
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.36 E-value=1.3e+02 Score=28.20 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=42.0
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++.-.. -.|.|.+.....+ +..-||..-.+-+.+++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED--VLHSWAVPSLGLK----------------TDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECc--ccccccccccccc----------------eecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 3578888888888876555 4455555443322 23337888888888887 699999998654
No 111
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=33.87 E-value=53 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=26.4
Q ss_pred ecCCcEEEEEEEeCCceeEEEEeechHhhhc
Q 009854 466 VPSGGWTAIRFRADNPGVWFMHCHLEVHTTW 496 (524)
Q Consensus 466 vpp~g~v~irf~adnpG~w~~HCHil~H~d~ 496 (524)
.+.|+.+.++++-.....+=+||..+.|.+.
T Consensus 15 ~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 15 FPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred eCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 4567888889988888899999999999764
No 112
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=32.38 E-value=2.1e+02 Score=21.35 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=30.5
Q ss_pred EecCCE--EEEEEEecCCCC--eEEEEEcCceeeEEEecCccc--ceeEecEEEeCCCceEEEEEEeCC----CCCceEE
Q 009854 180 VESGKT--YMLRLINAALNE--ELFFKIAGHKLTVVEVDAAYV--KPFKTETVLIAPGQTTNVLLSAAH----ATGKYLV 249 (524)
Q Consensus 180 v~~G~~--~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~--~P~~~d~v~l~pgeR~dv~v~~~~----~~g~~~~ 249 (524)
+.+|+. +++.+-|.+... ...+++. .-+|=.+ .|.... .|.||+...+-|+..- .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356664 468888988433 3444443 2233221 233334 8899987776666542 3588988
Q ss_pred EEe
Q 009854 250 AAS 252 (524)
Q Consensus 250 ~~~ 252 (524)
...
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 113
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=32.16 E-value=1.3e+02 Score=24.73 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=26.6
Q ss_pred EEEEEEEecCCCC-eEEEEEcCce-eeEEEecCcccceeEecEEEeCCCceEEEEEEeCC
Q 009854 185 TYMLRLINAALNE-ELFFKIAGHK-LTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAH 242 (524)
Q Consensus 185 ~~rlRliN~~~~~-~~~~~l~gh~-~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~ 242 (524)
.|+++|+|.+... .+.+.+.|.. +++. ...+.+.|.+|+..++-|....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEEE
Confidence 4899999999443 4455555532 2220 1247888999998887776554
No 114
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=31.99 E-value=1.3e+02 Score=21.77 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEE
Q 009854 178 LPVESGKTYMLRLINAALNEELFFKIAGHKLTVVE 212 (524)
Q Consensus 178 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via 212 (524)
+++.+|+..+||..... .+.+.+-..+|..
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~ 31 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR 31 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC
Confidence 56778888888854433 2566666666653
No 115
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.40 E-value=1.5e+02 Score=27.97 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=43.5
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++.-.. -.|.|.+.+...+ +..-||.+-.+.+.+++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~~k----------------~da~PG~~~~~~~~~~~-~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED--VLHSWAVPALGVK----------------MDAVPGRLNQTAFIASR-PGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCc--cccceeccccCCc----------------cccCCCceEEEEEEeCC-ceEEEEEChhhc
Confidence 4578889998888876555 4555555544322 23348999999998887 699999998654
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 201 G 201 (230)
T MTH00129 201 G 201 (230)
T ss_pred c
Confidence 3
No 116
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.81 E-value=62 Score=28.02 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.1
Q ss_pred EecCCcEEEEEEEe-CCc---eeEEEEeech
Q 009854 465 GVPSGGWTAIRFRA-DNP---GVWFMHCHLE 491 (524)
Q Consensus 465 ~vpp~g~v~irf~a-dnp---G~w~~HCHil 491 (524)
.|+||..+.|.++. .|| |.|.|+|=..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 46789999999954 566 8999999654
No 117
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=29.67 E-value=1.1e+02 Score=30.24 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=43.9
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++-.... .|.|.+. ...-.+..-||.+-.+-+.+++ +|.|...|..+.
T Consensus 151 NeL~iP~g~pV~f~lTS~DV--iHSF~IP----------------~Lg~K~damPG~~n~l~~~a~~-~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSV--MNSFFIP----------------RLGSQIYAMAGMQTRLHLIANE-PGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchh--hhhhhhh----------------hhCCeeecCCCceeEEEEEcCC-CEEEEEEChhhc
Confidence 35778888888888776663 3444443 3334445558888888898887 699999998765
Q ss_pred CC
Q 009854 256 DT 257 (524)
Q Consensus 256 ~~ 257 (524)
..
T Consensus 212 G~ 213 (315)
T PRK10525 212 GP 213 (315)
T ss_pred Cc
Confidence 43
No 118
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.48 E-value=1.6e+02 Score=27.75 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=43.3
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+|+++..+. -.|.|.+.+...+ +..-||..-.+.+.+++ +|.|...|..+.
T Consensus 144 n~lvlP~~~~v~~~itS~D--ViHsf~vp~lg~k----------------~daiPG~~~~~~~~~~~-~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VLHSFAVPSLSVK----------------IDAVPGRLNQTSFFIKR-PGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hhccccccccCce----------------eEccCCceEeEEEEeCC-CEEEEEEChhhc
Confidence 4578899999998888765 4555555544333 23337888888888887 699999998654
No 119
>PRK13202 ureB urease subunit beta; Reviewed
Probab=29.12 E-value=2e+02 Score=23.24 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=39.0
Q ss_pred eEEEecC--CEEEEEEEecCCCCeEEEEEcCceeeE--------EEecCcccceeEecEEEeCCCceEEEEEEeC
Q 009854 177 KLPVESG--KTYMLRLINAALNEELFFKIAGHKLTV--------VEVDAAYVKPFKTETVLIAPGQTTNVLLSAA 241 (524)
Q Consensus 177 ~~~v~~G--~~~rlRliN~~~~~~~~~~l~gh~~~v--------ia~DG~~~~P~~~d~v~l~pgeR~dv~v~~~ 241 (524)
.+++.+| ++++|++.|.+ .+...+.-|=|-+++ -++=|.-+.=-....+..-||+..+|-+..=
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 4788888 48899999999 777766555443322 1111111110123577888888888877644
No 120
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=28.86 E-value=3.1e+02 Score=25.60 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=65.9
Q ss_pred cccCCCCccccEEEEcCcCCCcEEEEecCCEEEEEEEeCCCCC-----ceEEecCccccCCCCCCCCCccccccCCCCCc
Q 009854 2 KNATRLCSTKPIVTVNGYFPGPTIVAREDDTVLVKVVNHVKYN-----VSIHWHGVRQLRTCWADGPAYITQCPIQPGQN 76 (524)
Q Consensus 2 ~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~-----~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~ 76 (524)
+..+++|..--.+++.|-+-.-.|.|..|..+|+++.=+.+.+ .+--||+.. .++-+|-
T Consensus 76 ~~~a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ 139 (272)
T COG4633 76 IAFAPNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQV 139 (272)
T ss_pred cccccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCce
Confidence 4567777776778888877657999999999999999887543 223333332 2445777
Q ss_pred eEEEEEeCCcccceeeccChHHHHhhceeeEEEcCCCCC
Q 009854 77 YIYNFTLAGQRGTLWWHAHILWLRATVHGAIVILPKRGV 115 (524)
Q Consensus 77 ~~y~~~~~~~~Gt~wyH~H~~~~~~Gl~G~~iV~~~~~~ 115 (524)
...+|+- .++|.|-+-|-.. =|.|.+.|+.....
T Consensus 140 ssIe~T~-~s~ge~af~cgmn----m~~G~~~vet~~~~ 173 (272)
T COG4633 140 SSIEFTP-ISKGEYAFLCGMN----MFRGNIQVETLTGK 173 (272)
T ss_pred eEEEecc-ccccchhhhcchh----hccCeeEEEecCCc
Confidence 7888885 7899997777433 35688999877653
No 121
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=28.56 E-value=65 Score=26.61 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=31.9
Q ss_pred EEEEEeCCCCC---ceEEecCccccCCC---CCCCCCccccccCCCCCceEEEEEe--CCcccc
Q 009854 34 LVKVVNHVKYN---VSIHWHGVRQLRTC---WADGPAYITQCPIQPGQNYIYNFTL--AGQRGT 89 (524)
Q Consensus 34 ~v~l~N~l~~~---~~iH~HG~~~~~~~---~~DG~~~~~q~~i~PG~~~~y~~~~--~~~~Gt 89 (524)
.|++.|....+ .+=|||=-...+.- ..+||-| .|..|+||++|+|.=-. +.+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 57788887655 44588743322110 0334432 37789999999997433 344555
No 122
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.51 E-value=2.1e+02 Score=26.84 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=42.8
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++.-+. -.|.|.+.....+ +..-||..-.+.+.+++ +|.|...|..+.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vp~l~~k----------------~davPG~~~~~~~~~~~-~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQLNFLINR-PGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hhhheeccccCCe----------------eecCCCceEEEEEEEcC-ceEEEEEeechh
Confidence 4678888888887776554 4566655543322 22337888888888887 699999998654
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
+
T Consensus 201 G 201 (227)
T MTH00154 201 G 201 (227)
T ss_pred C
Confidence 3
No 123
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.07 E-value=2.2e+02 Score=26.83 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCC
Q 009854 177 KLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLD 256 (524)
Q Consensus 177 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~ 256 (524)
.+.+..|+.+||++--.. -.|.|.+.+...++-+. ||..-.+.+.+++ ||.|...|..+..
T Consensus 141 ~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k~dai----------------PG~~~~~~~~~~~-~G~~~g~Cse~CG 201 (230)
T MTH00185 141 RMVVPMESPIRVLITAED--VLHSWTVPALGVKMDAV----------------PGRLNQATFIISR-PGLYYGQCSEICG 201 (230)
T ss_pred eEEEecCCEEEEEEEcCc--ccccccccccCceeEec----------------CCceEEEEEEeCC-cEEEEEEchhhcC
Q ss_pred CC
Q 009854 257 TP 258 (524)
Q Consensus 257 ~~ 258 (524)
..
T Consensus 202 ~~ 203 (230)
T MTH00185 202 AN 203 (230)
T ss_pred cC
No 124
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=27.89 E-value=3.6e+02 Score=22.47 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=38.4
Q ss_pred EEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCccc-ceeEecEEEeCCCceEEEEEEeCCCCC
Q 009854 178 LPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYV-KPFKTETVLIAPGQTTNVLLSAAHATG 245 (524)
Q Consensus 178 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-~P~~~d~v~l~pgeR~dv~v~~~~~~g 245 (524)
|++.....|+|.+... ....|.|+|.. |++..+..- .+.....+.|..|+++.+.|..-+..+
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 4554444688888433 34567788764 454443321 233445688888888888887765433
No 125
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=27.80 E-value=1.1e+02 Score=30.74 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.5
Q ss_pred cccCCCCCceEEEEEe
Q 009854 68 QCPIQPGQNYIYNFTL 83 (524)
Q Consensus 68 q~~i~PG~~~~y~~~~ 83 (524)
+.||+|||+.+.+.++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999988
No 126
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=27.45 E-value=35 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=19.2
Q ss_pred EEEEcCcCC-CcEEEEecCCEEEE
Q 009854 13 IVTVNGYFP-GPTIVAREDDTVLV 35 (524)
Q Consensus 13 ~~~~NG~~p-gP~i~~~~Gd~v~v 35 (524)
-+.+||+.- -|..+++.||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 467899864 68899999999986
No 127
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.03 E-value=2.2e+02 Score=26.74 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=51.7
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+.. .+..|.|.+- +-+ .++|.+ ||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS----~DViHsf~vP-------~l~------------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITA----ADVLHSWTVP-------SLG------------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEec----Cccccceecc-------ccC------------------ccccCC---CCcEEEEEEEc
Confidence 456789999999999876 3566665553 222 235655 57777789999
Q ss_pred CCceeEEEEeechHhh-hccceEEEEEcC
Q 009854 479 DNPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 479 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
+.||.+.--|--+-=. +.-|-..++|.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 9999999999766544 334554555443
No 128
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.87 E-value=1.8e+02 Score=23.31 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=38.6
Q ss_pred EEEEecC-CEEEEEEEeCCCCCceE--EecCccccCCCCCC-----C----CCccccccCCCCCceEEEEE
Q 009854 24 TIVARED-DTVLVKVVNHVKYNVSI--HWHGVRQLRTCWAD-----G----PAYITQCPIQPGQNYIYNFT 82 (524)
Q Consensus 24 ~i~~~~G-d~v~v~l~N~l~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~q~~i~PG~~~~y~~~ 82 (524)
.|.+++| ++++|.+.|..+.|.-+ |+|=.++...-..| | .|.-|..-+.||++.+.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4888888 78999999999877664 77766654432222 1 22223345678888877764
No 129
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.81 E-value=2.4e+02 Score=26.82 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=42.8
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++--+. -.|.|.+.....++-| -||..-.+-+.+++ ||.|...|..+.
T Consensus 151 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lgvK~Da----------------iPG~~n~~~~~~~~-~G~y~g~C~e~C 211 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD--VLHSFAVPSLGLKIDA----------------VPGRLNQTGFFIKR-PGVFYGQCSEIC 211 (240)
T ss_pred ceEEEecCCEEEEEEEcCC--cccceeecccCceeec----------------CCCcceeEEEEcCC-CEEEEEEchhhc
Confidence 4578888888887775444 5667776655444322 36777777788877 699999998654
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 212 G 212 (240)
T MTH00023 212 G 212 (240)
T ss_pred C
Confidence 3
No 130
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.29 E-value=2.6e+02 Score=26.28 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=52.8
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+.+ .+..|.|.+-+... ..|. -||-...+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS----~DViHsf~vP~~~~-------------------------k~da---iPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTA----ADVIHSWTVPSLGV-------------------------KVDA---VPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEe----CCccccccccccCc-------------------------ceec---CCCceEEEEEEe
Confidence 456788999999999987 35566665554322 2233 267777788999
Q ss_pred CCceeEEEEeechHhh-hccceEEEEEcC
Q 009854 479 DNPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 479 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
+.||.+..-|.-+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999999877655 455555555544
No 131
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=26.05 E-value=2.3e+02 Score=31.52 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCCCccccEEEEc-C-cCCCcEEEEec---CCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccccCCCCCceEE
Q 009854 5 TRLCSTKPIVTVN-G-YFPGPTIVARE---DDTVLVKVVNHVKYNVSIHWHGVRQLRTCWADGPAYITQCPIQPGQNYIY 79 (524)
Q Consensus 5 ~~~g~~~~~~~~N-G-~~pgP~i~~~~---Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y 79 (524)
.|+|..|.+.+-- . .-+.|.++++. ...|+|+|.|.......+|..-... .++.+ -+..|.+|++.+.
T Consensus 574 GPnGf~R~f~G~~~~~~~~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~ 646 (690)
T TIGR03396 574 GPNGFLREFRGNAAAAAGAVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVEL 646 (690)
T ss_pred CCCceeEEeecccccccCCCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEE
Confidence 4556555554421 0 22446677654 4569999999988888887753221 11111 1245889999999
Q ss_pred EEEeCCcccceeec
Q 009854 80 NFTLAGQRGTLWWH 93 (524)
Q Consensus 80 ~~~~~~~~Gt~wyH 93 (524)
.|.+ ...+ -||-
T Consensus 647 ~w~l-~~s~-GWYD 658 (690)
T TIGR03396 647 HWDL-SASG-GWYD 658 (690)
T ss_pred EEec-cCCC-CceE
Confidence 9976 3233 5665
No 132
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.56 E-value=2e+02 Score=23.19 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCceE--EecCccccCCCCCCC---------CCccccccCCCCCceEEEE
Q 009854 25 IVARED-DTVLVKVVNHVKYNVSI--HWHGVRQLRTCWADG---------PAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 25 i~~~~G-d~v~v~l~N~l~~~~~i--H~HG~~~~~~~~~DG---------~~~~~q~~i~PG~~~~y~~ 81 (524)
|.+++| +++.|+++|..+.+.-+ |+|=.++...-..|= .|.-|..-+.||++.+.+.
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L 81 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVEL 81 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEE
No 133
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.17 E-value=2.9e+02 Score=26.19 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=53.1
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+.. .+..|.|.+-.-.. .+|.+ ||-...+.|.+
T Consensus 150 ~n~lvlP~~~~v~~~~tS----~DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTG----ADVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEc----CCcccceeecccCc-------------------------eeecC---CCcceeEEEEc
Confidence 356789999999999876 46677776653321 23443 56666788999
Q ss_pred CCceeEEEEeechHhh-hccceEEEEEcC
Q 009854 479 DNPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 479 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
+.||.|.-.|.-+--. +.-|-..++|.+
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVS 226 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999999877655 455555565554
No 134
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=25.08 E-value=2.4e+02 Score=24.27 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=43.0
Q ss_pred CEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeE-------ecEEEeCCCceE-EEEEEeCCCCCceEEEE
Q 009854 184 KTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFK-------TETVLIAPGQTT-NVLLSAAHATGKYLVAA 251 (524)
Q Consensus 184 ~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~-------~d~v~l~pgeR~-dv~v~~~~~~g~~~~~~ 251 (524)
.+|.|.+-|.|. .. +.++...++|+ +||..+.|.. .+++.|.|||-. ++.+.-.. .|.-.+..
T Consensus 70 ~t~t~yiKNtG~-~~--~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l-SGyhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGS-DS--IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL-SGYHRIVV 140 (154)
T ss_pred eEEEEEEecCCC-cc--cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC-CcceEEEE
Confidence 478899999993 33 46678888887 7998876532 257789999988 55554443 25444444
No 135
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.91 E-value=3e+02 Score=25.90 Aligned_cols=75 Identities=15% Similarity=0.333 Sum_probs=51.5
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+.. .+..|.|.+-.. | .++|.+ ||-...+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS----~DViHsf~iP~l-------g------------------~k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSS----ADVLHSWAVPSL-------G------------------VKMDAV---PGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEE----CCcccccccccc-------C------------------ceeecC---CCceEEEEEEc
Confidence 456789999999999876 356676665432 1 124443 57777788999
Q ss_pred CCceeEEEEeechHhhhccce-EEEEEc
Q 009854 479 DNPGVWFMHCHLEVHTTWGLK-MAFIVD 505 (524)
Q Consensus 479 dnpG~w~~HCHil~H~d~GM~-~~~~V~ 505 (524)
+.||.+..-|--+--.....| ..++|.
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv 214 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPIVIESV 214 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEe
Confidence 999999999987765544444 344443
No 136
>PRK07440 hypothetical protein; Provisional
Probab=24.42 E-value=69 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=21.1
Q ss_pred ccEEEEcCcCCC----cEEEEecCCEEEEE
Q 009854 11 KPIVTVNGYFPG----PTIVAREDDTVLVK 36 (524)
Q Consensus 11 ~~~~~~NG~~pg----P~i~~~~Gd~v~v~ 36 (524)
+-++.+||++-. +...+++||+|+|-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 346788998876 78899999999873
No 137
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=23.69 E-value=4.1e+02 Score=21.70 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=20.4
Q ss_pred CceeeEEEecCccc--ceeEecEEEeCCCceEEEEEEeCC
Q 009854 205 GHKLTVVEVDAAYV--KPFKTETVLIAPGQTTNVLLSAAH 242 (524)
Q Consensus 205 gh~~~via~DG~~~--~P~~~d~v~l~pgeR~dv~v~~~~ 242 (524)
.+++++...++... .+....++.|.+|..|.+.+.-..
T Consensus 44 ~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 44 TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCC
Confidence 34455544444322 244556666777777776665443
No 138
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=23.28 E-value=71 Score=23.10 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred cEEEEcCcCCC----cEEEEecCCEEEEE
Q 009854 12 PIVTVNGYFPG----PTIVAREDDTVLVK 36 (524)
Q Consensus 12 ~~~~~NG~~pg----P~i~~~~Gd~v~v~ 36 (524)
-.+.+||++-. +...+++||+|+|-
T Consensus 32 vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 32 VAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 35678997665 78889999999873
No 139
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=23.05 E-value=2.5e+02 Score=22.55 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCceE--EecCccccCCCCCCC---------CCccccccCCCCCceEEEE
Q 009854 25 IVARED-DTVLVKVVNHVKYNVSI--HWHGVRQLRTCWADG---------PAYITQCPIQPGQNYIYNF 81 (524)
Q Consensus 25 i~~~~G-d~v~v~l~N~l~~~~~i--H~HG~~~~~~~~~DG---------~~~~~q~~i~PG~~~~y~~ 81 (524)
|.+++| ++++|++.|..+.+.-+ |+|=.++...-..|= .|.-|..-+.||++.+.+.
T Consensus 13 I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L 81 (101)
T cd00407 13 IELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVEL 81 (101)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEE
No 140
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.57 E-value=1.9e+02 Score=26.85 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=51.9
Q ss_pred EEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEeCC
Q 009854 401 IYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRADN 480 (524)
Q Consensus 401 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 480 (524)
-+.++.|+.+++.+.. .+..|.| +|=+-+ ..+|.+ ||-...+.|+++.
T Consensus 131 ~l~iP~g~~v~~~ltS----~DViHsf-------~vP~l~------------------~k~dai---PG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQS----ADTMTSF-------WIPQLG------------------GQKYAM---TGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEEC----Cchhhhh-------hchhhC------------------ceeecC---CCceEEEEEEeCC
Confidence 4678899999999876 3444544 443322 235665 6778889999999
Q ss_pred ceeEEEEeechHhh-hccceEEEEEcCCC
Q 009854 481 PGVWFMHCHLEVHT-TWGLKMAFIVDNGK 508 (524)
Q Consensus 481 pG~w~~HCHil~H~-d~GM~~~~~V~~~~ 508 (524)
||.|--.|=-+-=. +.-|...++|.+++
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeCHH
Confidence 99999999654322 45666667665543
No 141
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.97 E-value=2.9e+02 Score=25.97 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred eEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCC
Q 009854 177 KLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLD 256 (524)
Q Consensus 177 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~ 256 (524)
.+.+..|+.+||++.-.. -.|.|.+.....++=|. ||..-.+.+.+++ +|.|...|..+..
T Consensus 141 ~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~k~da~----------------PG~~n~~~~~~~~-~G~~~g~C~e~CG 201 (228)
T MTH00076 141 RMVVPMESPIRMLITAED--VLHSWAVPSLGIKTDAI----------------PGRLNQTSFIASR-PGVYYGQCSEICG 201 (228)
T ss_pred eEEEecCCEEEEEEEecc--ccccccccccCceEEcc----------------CCcceeEEEEeCC-cEEEEEEChhhcC
No 142
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.93 E-value=3.9e+02 Score=25.05 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=0.0
Q ss_pred eEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCCC
Q 009854 177 KLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFLD 256 (524)
Q Consensus 177 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~~ 256 (524)
.+.+..|+.+||++--+. -.|.|.+.....++=++ ||..-.+.+.+++ ||.|...|..+..
T Consensus 141 ~lvlP~~~~v~~~~tS~D--ViHsf~vP~lg~K~Dav----------------PG~~n~~~~~~~~-~G~y~g~CsE~CG 201 (227)
T MTH00117 141 RMVIPMESPIRILITAED--VLHSWAVPSLGVKTDAV----------------PGRLNQTSFITTR-PGVFYGQCSEICG 201 (227)
T ss_pred eEEEecCceEEEEEEecc--hhhcccccccCceeEec----------------CCceEEEEEEEcc-cceEEEEeccccc
Q ss_pred CC
Q 009854 257 TP 258 (524)
Q Consensus 257 ~~ 258 (524)
..
T Consensus 202 ~~ 203 (227)
T MTH00117 202 AN 203 (227)
T ss_pred cC
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=21.75 E-value=76 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEcCcCCCcE----EEEecCCEEEEE
Q 009854 13 IVTVNGYFPGPT----IVAREDDTVLVK 36 (524)
Q Consensus 13 ~~~~NG~~pgP~----i~~~~Gd~v~v~ 36 (524)
++.+||++-... ..+++||+|.|-
T Consensus 32 ~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 32 AVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 567999986555 889999999873
No 144
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=20.94 E-value=4.3e+02 Score=22.00 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=34.3
Q ss_pred CcEEEEecCCEEEEEEEeCCC---CCceEEec----Ccccc-CCCCCCCCCccccccCCCCCceEEEEEe
Q 009854 22 GPTIVAREDDTVLVKVVNHVK---YNVSIHWH----GVRQL-RTCWADGPAYITQCPIQPGQNYIYNFTL 83 (524)
Q Consensus 22 gP~i~~~~Gd~v~v~l~N~l~---~~~~iH~H----G~~~~-~~~~~DG~~~~~q~~i~PG~~~~y~~~~ 83 (524)
+..=.++.|..+.+.+.=..+ .......| |+..+ +.+..||=-. ..|||..|+.++|.+.+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 344567778877766552222 22333334 33332 1112455212 36999999999999976
No 145
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=20.76 E-value=3.6e+02 Score=21.68 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=38.2
Q ss_pred eEEEecC-CEEEEEEEecCCCCeEEEEEcCceeeE--------EEecCcccceeEecEEEeCCCceEEEEEEeC
Q 009854 177 KLPVESG-KTYMLRLINAALNEELFFKIAGHKLTV--------VEVDAAYVKPFKTETVLIAPGQTTNVLLSAA 241 (524)
Q Consensus 177 ~~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~v--------ia~DG~~~~P~~~d~v~l~pgeR~dv~v~~~ 241 (524)
.+++.+| ++..|.+.|.+ .+...+--|=|-+++ -++=|..+.=-....+..-||+..+|-+..=
T Consensus 12 ~I~ln~gr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTG-DRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred CEEeCCCCcEEEEEEEeCC-CcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 3677777 57789999999 777766544443322 1111111110123578888888888877644
No 146
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.48 E-value=4e+02 Score=25.06 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=42.2
Q ss_pred eeEEEecCCEEEEEEEecCCCCeEEEEEcCceeeEEEecCcccceeEecEEEeCCCceEEEEEEeCCCCCceEEEEeeCC
Q 009854 176 FKLPVESGKTYMLRLINAALNEELFFKIAGHKLTVVEVDAAYVKPFKTETVLIAPGQTTNVLLSAAHATGKYLVAASPFL 255 (524)
Q Consensus 176 p~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~P~~~d~v~l~pgeR~dv~v~~~~~~g~~~~~~~~~~ 255 (524)
..+.+..|+.+||++--.. -.|.|.+.....++ | .-||..-.+.+.+++ +|.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k~-------------d---aiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD--VLHSWAVPSLGVKM-------------D---AVPGRLNQTTFFISR-TGLFYGQCSEIC 200 (229)
T ss_pred ceEEEecCeEEEEEEEECC--ccccccccccCcee-------------e---cCCCceEEEEEEcCC-CEEEEEEccccc
Confidence 4678888988887776544 56666666443332 2 226777777787876 699999998654
Q ss_pred C
Q 009854 256 D 256 (524)
Q Consensus 256 ~ 256 (524)
.
T Consensus 201 G 201 (229)
T MTH00038 201 G 201 (229)
T ss_pred C
Confidence 3
No 147
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.21 E-value=3.3e+02 Score=25.60 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=51.9
Q ss_pred ceEEEccCCCEEEEEEEcCCCCCCCCCCeeecCcceEEEeecCCCCCCCCCCCCCCCCCCCcCceeEecCCcEEEEEEEe
Q 009854 399 TRIYRLPYNSTVQLVLQDTGMIAPENHPLHLHGFNFFEVGRGLGNFNSKKDPKKFNLVDPVERNTIGVPSGGWTAIRFRA 478 (524)
Q Consensus 399 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 478 (524)
.+.+.++.|+.+++.+... +..| .|+|-+-| ...|.+ ||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViH-------sf~ip~~~------------------~k~da~---PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAE----DVLH-------SWAVPALG------------------VKMDAV---PGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeC----cccc-------ceeccccC------------------CccccC---CCceEEEEEEe
Confidence 3567889999999998763 4444 45555433 123443 67777888999
Q ss_pred CCceeEEEEeechHhh-hccceEEEEEcC
Q 009854 479 DNPGVWFMHCHLEVHT-TWGLKMAFIVDN 506 (524)
Q Consensus 479 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 506 (524)
+.||.+...|.-+--. +..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 9999999999875544 455665665554
Done!