Query 009855
Match_columns 523
No_of_seqs 125 out of 173
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 61.5 1.4 4.7E-05 44.4 -0.6 36 165-200 335-370 (449)
2 1uxx_X Xylanase U; carbohydrat 15.4 1E+02 0.0036 26.5 3.2 20 68-87 110-129 (133)
3 1uy4_A Endo-1,4-beta-xylanase 13.3 1.4E+02 0.0049 26.2 3.5 19 68-86 125-143 (145)
4 2q9k_A Uncharacterized protein 12.0 5.5E+02 0.019 22.4 7.0 45 49-93 69-117 (151)
5 1od3_A Putative xylanase; hydr 11.5 1.5E+02 0.0052 26.8 3.2 20 68-87 147-166 (168)
6 2v4v_A GH59 galactosidase; hyd 10.8 1.5E+02 0.0051 25.2 2.8 18 68-85 107-128 (129)
7 2hew_F Tumor necrosis factor l 10.3 3.6E+02 0.012 24.9 5.1 32 57-94 51-82 (152)
8 1w9s_A BH0236 protein, BHCBM6; 9.7 1.7E+02 0.0058 25.3 2.8 19 68-86 117-140 (142)
9 4hyz_A Uncharacterized protein 8.9 5.1E+02 0.017 21.8 5.4 31 49-83 83-113 (114)
10 4axo_A EUTQ, ethanolamine util 7.7 5.1E+02 0.017 23.3 5.1 29 46-74 70-100 (151)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=61.55 E-value=1.4 Score=44.39 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=24.0
Q ss_pred hHHHHHhchHHHHHHhhhcCCChHHHHhhhhcccCC
Q 009855 165 QISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSG 200 (523)
Q Consensus 165 QIsEVMSqMKdLM~FSknn~LSPlEALe~fv~~~~~ 200 (523)
++.++...|.+.+.--..-.++|-|||+++.++...
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~eeal~~~~~~~~~ 370 (449)
T 3iot_A 335 QMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAA 370 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345555566665553335568999999999877644
No 2
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=15.37 E-value=1e+02 Score=26.46 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.0
Q ss_pred eEEEEeCCCCceeEEEEeec
Q 009855 68 QLRIVFSPDLKICSWEFCAR 87 (523)
Q Consensus 68 ~LRa~Fd~~LKIEswEF~t~ 87 (523)
.|++.|...+.|+||+|...
T Consensus 110 ~l~l~f~G~~nl~~~~f~~~ 129 (133)
T 1uxx_X 110 DLYLVFSGPVNIDYFIFDSN 129 (133)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEcC
Confidence 57788988999999999754
No 3
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=13.31 E-value=1.4e+02 Score=26.21 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.3
Q ss_pred eEEEEeCCCCceeEEEEee
Q 009855 68 QLRIVFSPDLKICSWEFCA 86 (523)
Q Consensus 68 ~LRa~Fd~~LKIEswEF~t 86 (523)
.|++.|...+.|+||+|.-
T Consensus 125 ~lyl~f~g~~nl~~~~F~~ 143 (145)
T 1uy4_A 125 DIVLVFSGPVNVDNFIFSR 143 (145)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEEEe
Confidence 5778888889999999974
No 4
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}
Probab=12.02 E-value=5.5e+02 Score=22.42 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=33.7
Q ss_pred eCceEEEEEecCeEEEEeeeEEEEeCCC----CceeEEEEeecceeecc
Q 009855 49 YAKAIQESVFEQLRVVRDGQLRIVFSPD----LKICSWEFCARRHEELI 93 (523)
Q Consensus 49 c~KAs~iy~Yegs~Vv~~G~LRa~Fd~~----LKIEswEF~t~sHEEyI 93 (523)
++|+++.++=+...+.++|+.+++-|.. ++|..+++.+..=++..
T Consensus 69 np~Vsl~v~~~~~~~~i~G~A~~v~d~~e~~~~~~~li~v~i~~v~~~~ 117 (151)
T 2q9k_A 69 HPVFTLIFFADQSTYSLTCTDVAAWETTARLPLKVALYEGQIKEVRDIL 117 (151)
T ss_dssp SCCEEEEEEETTEEEEEEEEEEEEECCSSCCSSCEEEEEEEEEEEEECS
T ss_pred CCcEEEEEECCCCEEEEEEEEEEEeCccccCCcceEEEEEEEEEEEEcc
Confidence 4888888865556678999999998874 46667777777766665
No 5
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=11.51 E-value=1.5e+02 Score=26.81 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.9
Q ss_pred eEEEEeCCCCceeEEEEeec
Q 009855 68 QLRIVFSPDLKICSWEFCAR 87 (523)
Q Consensus 68 ~LRa~Fd~~LKIEswEF~t~ 87 (523)
.|++.|...+.|+||+|...
T Consensus 147 dLylvf~G~~nldw~~F~~~ 166 (168)
T 1od3_A 147 DIVLVFSGPVNVDWFVFSKS 166 (168)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEeC
Confidence 57788988899999999753
No 6
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum}
Probab=10.78 E-value=1.5e+02 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.526 Sum_probs=14.5
Q ss_pred eEEEEeCCC----CceeEEEEe
Q 009855 68 QLRIVFSPD----LKICSWEFC 85 (523)
Q Consensus 68 ~LRa~Fd~~----LKIEswEF~ 85 (523)
.|++.|... +.|+||+|.
T Consensus 107 ~l~l~f~g~~~~~~nld~~~f~ 128 (129)
T 2v4v_A 107 DVYLVFKGDSGYLFNLNWFTFS 128 (129)
T ss_dssp EEEEEEECSSSCCCEEEEEEEE
T ss_pred EEEEEEECCCCceEEEEEEEEE
Confidence 577888654 999999996
No 7
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF, cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1 PDB: 2hey_F
Probab=10.34 E-value=3.6e+02 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.2
Q ss_pred EecCeEEEEeeeEEEEeCCCCceeEEEEeecceeeccc
Q 009855 57 VFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIP 94 (523)
Q Consensus 57 ~Yegs~Vv~~G~LRa~Fd~~LKIEswEF~t~sHEEyIp 94 (523)
..||.+++ .||..|+.+++| +|+.|..+|.+.
T Consensus 51 ~CDGfYLi---sLKG~fSqe~sI---~l~YRk~~~plf 82 (152)
T 2hew_F 51 KCDGLYII---YLKGSFFQEVKI---DLHFREDHNPIS 82 (152)
T ss_dssp CBCEEEEE---EEEEEESSCCCE---EEECCTTSCCEE
T ss_pred ecCceEEE---EEEEeeccccEE---EEEEecCCCccc
Confidence 33444443 389999999997 578888888664
No 8
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A*
Probab=9.66 E-value=1.7e+02 Score=25.28 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.2
Q ss_pred eEEEEeCCC-----CceeEEEEee
Q 009855 68 QLRIVFSPD-----LKICSWEFCA 86 (523)
Q Consensus 68 ~LRa~Fd~~-----LKIEswEF~t 86 (523)
.|++.|... +.|+||+|..
T Consensus 117 ~l~l~f~g~~~~~~~nld~~~f~~ 140 (142)
T 1w9s_A 117 DVYLVFKGSPEYDLMNVNWFVFRA 140 (142)
T ss_dssp EEEEEEESCTTSCCCEEEEEEEEC
T ss_pred EEEEEEECCCCcceEEEEEEEEEe
Confidence 577888654 9999999974
No 9
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=8.92 E-value=5.1e+02 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=22.2
Q ss_pred eCceEEEEEecCeEEEEeeeEEEEeCCCCceeEEE
Q 009855 49 YAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWE 83 (523)
Q Consensus 49 c~KAs~iy~Yegs~Vv~~G~LRa~Fd~~LKIEswE 83 (523)
+.-+.+...|++..++ .|+.||.+.||.-|-
T Consensus 83 y~vv~~~~~ye~~~~~----f~i~Fd~d~kl~G~~ 113 (114)
T 4hyz_A 83 YGGVIIVVKYEEGNVN----YSLAYDEDMNLVSFT 113 (114)
T ss_dssp EEEEEEEEEETTEEEE----EEEEECTTSCEEEEE
T ss_pred eEEEEEEEEEeccceE----EEEEECCCCcEeeeE
Confidence 4455677778774443 679999999997653
No 10
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=7.71 E-value=5.1e+02 Score=23.26 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=0.0
Q ss_pred EEEeCceEEEEEecC--eEEEEeeeEEEEeC
Q 009855 46 VLDYAKAIQESVFEQ--LRVVRDGQLRIVFS 74 (523)
Q Consensus 46 ~LEc~KAs~iy~Yeg--s~Vv~~G~LRa~Fd 74 (523)
++++..+.+.++++. ..++++|.+++..+
T Consensus 70 ~~~~e~~~~~~~~~~eE~~yVLeG~~~l~i~ 100 (151)
T 4axo_A 70 MMEMKETTFDWTLNYDEIDYVIDGTLDIIID 100 (151)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEEEEEEEEET
T ss_pred EEEEcCccccEeCCCcEEEEEEEeEEEEEEC
Done!