BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009856
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 197/519 (37%), Positives = 294/519 (56%), Gaps = 73/519 (14%)
Query: 21 AEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 77
AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES ++E
Sbjct: 108 AEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQKQEA 164
Query: 78 ARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAHEAKL 122
R++T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 165 MRKATVEHEMELRHKNEMLRIEAEARARAKVERENADIIRENIRLKAA------------ 212
Query: 123 TEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIY 182
+H R+ L +I T + EG R+ ++D +K+ TV G + LA GIY
Sbjct: 213 --EH------------RQTVLESIKTAGTVFGEGFRAFISDWDKVTATVAGLSLLAVGIY 258
Query: 183 TTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA--MNKVIRNKTSAGTAGPVE 240
T + V Y+ LG+PSL+R++S +F + + ++K + +K G
Sbjct: 259 TAKNATGVAGRYIEARLGKPSLVRDTS--RFTVAEAVKHPVKISKRLLSKIQDALEG--- 313
Query: 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 300
+IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A SG
Sbjct: 314 -------VILSPKLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSG 366
Query: 301 LDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQR 360
+DYA+MTGGDVAP+G + VT +H++FDWA SK+GLLLF+DEADAFL +R++ +SE R
Sbjct: 367 MDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLR 426
Query: 361 SALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLK 420
+ LNA L+RTG+QS +LVLA+N+P D AI DRIDE++ F LP EER +L++LY
Sbjct: 427 ATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFD 486
Query: 421 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQA 480
KY+ + KQ+ K+ D + A+ TEG SGREI+KL + QA
Sbjct: 487 KYVLQPASEG----------KQRLKVAQFDYGKKC-SDLAQLTEGMSGREISKLGVAWQA 535
Query: 481 AVYARPDCVLDSQLFREVVEYKVEEHHQRIK-LAAEGSQ 518
A YA D +L+ + V + +H Q+++ L AEG +
Sbjct: 536 AAYASEDGILNEAMIDARVADAIRQHQQKMEWLKAEGKE 574
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 193/505 (38%), Positives = 285/505 (56%), Gaps = 39/505 (7%)
Query: 21 AEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 77
+EE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES ++E
Sbjct: 108 SEEKRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQKQEA 164
Query: 78 ARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 137
R++T E E+ + ++ AEA RA + D R + +
Sbjct: 165 MRKATVEH-----------EMELRHKNDMLRIEAEAHARAKVERENADIIREQIRLKAAE 213
Query: 138 EREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNR 197
R+ L +I T + EG R+ ++D +K+ TV G T LA G+YT + G V Y+
Sbjct: 214 HRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNGTGVAGRYIEA 273
Query: 198 ILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRR 257
LG+PSL+R++S + ++K I +K G +IL P L+ R
Sbjct: 274 RLGKPSLVRDTSRITVVEAIKHPIKISKRIFSKIQDALEG----------VILSPRLEER 323
Query: 258 IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ 317
++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A S +DYA+MTGGDVAP+G +
Sbjct: 324 VRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSSMDYAIMTGGDVAPMGRE 383
Query: 318 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 377
VT +H++FDWA SK+GLLLF+DEADAFL +R++ +SE R+ LNA L+RTG+QS
Sbjct: 384 GVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKF 443
Query: 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437
+LVLA+N+P D AI DRIDE++ F LP EER +L++LY KY+ +
Sbjct: 444 MLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFDKYVLQPASEG------- 496
Query: 438 LFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 497
KQ+ K+ D E A TEG SGREI+KL + QAA YA D +L +
Sbjct: 497 ---KQRLKVAQFDYGKKC-SELATLTEGMSGREISKLGVAWQAAAYASEDGILTEAMIDA 552
Query: 498 VVEYKVEEHHQRIK-LAAEGSQPTK 521
V + +H Q+++ L AEG + TK
Sbjct: 553 RVADAIRQHQQKMEWLKAEGKESTK 577
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 197/520 (37%), Positives = 289/520 (55%), Gaps = 69/520 (13%)
Query: 21 AEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 77
AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QE+S ++E
Sbjct: 108 AEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEDSVQKQEA 164
Query: 78 ARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAHEAKL 122
RR+T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 165 MRRATVEHEMELRHKNEMLRIEAEARAQAKVERENADIIREQIRLKAA------------ 212
Query: 123 TEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIY 182
+H R+ L +I T + EG R+ ++D +K+ TV G T LA G+Y
Sbjct: 213 --EH------------RQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVY 258
Query: 183 TTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAI 242
T + V Y+ LG+PSL+R++S + + K + +K G
Sbjct: 259 TAKNATGVAGRYIEARLGKPSLVRDTSRITVAEAVKHPIKITKRLYSKIQDALEG----- 313
Query: 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD 302
+IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A SG+D
Sbjct: 314 -----VILSPRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMD 368
Query: 303 YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA 362
YA+MTGGDVAP+G + VT +H++FDWA SK+GLLLF+DEADAFL +R++ +SE R+
Sbjct: 369 YAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRAT 428
Query: 363 LNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422
LNA L+RTG+QS +LVLA+N+P D AI DRIDE++ F LP EER +L++LY KY
Sbjct: 429 LNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFDKY 488
Query: 423 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482
+ + KQ+ K+ D E ++ TEG SGREI+KL + QAA
Sbjct: 489 VLQPASEG----------KQRLKVAQFDYGKKC-SELSKLTEGMSGREISKLGVAWQAAA 537
Query: 483 YARPDCVLDSQLFREVVEYKVEEHHQRIK-LAAEGSQPTK 521
YA D +L + V + +H Q++ L AEG + K
Sbjct: 538 YASEDGILTEAMIDARVADAIRQHQQKMAWLKAEGKEGAK 577
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 309 bits (791), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 279/479 (58%), Gaps = 53/479 (11%)
Query: 42 EDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIE 101
+D+LARKR + + + R E ++ QEES ++EQ R+ T E A + E E+ + E
Sbjct: 130 QDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQLRKQTIEHELALKHKYELEKIDAE 189
Query: 102 RETIRVKAMAEAEGR---AHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVR 158
R +A A + R + KL E+ NR+ +IE+I T+ I G+
Sbjct: 190 ---TRARAKAARDNRDVNLEQMKLHEEENRKTVIEKIK-----------TSGELIGSGLN 235
Query: 159 SLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESS------IGK 212
L D+ K+ VGG TALA G YT + G VT Y+ LG+PSL+RE+S + K
Sbjct: 236 QFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYIESRLGKPSLVRETSRITPLEVLK 295
Query: 213 FPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQ 272
P + Q M + ++ P+ NG ++L P+L+RR++ +A T+NTK +
Sbjct: 296 HPIKSV--QMMTRQKKD--------PL-----NG-VVLPPALERRLRDIAITTSNTKRNN 339
Query: 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKS 332
FRN++FYGPPGTGKT+ A+ +A+ SGLDYA++TGGD+APLG V+ IH++FDWA KS
Sbjct: 340 GLFRNVMFYGPPGTGKTLFAKSLAQHSGLDYAVLTGGDIAPLGRDGVSAIHKVFDWASKS 399
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA 392
+KGL++FIDEADAFL +R+ MSE R+ALNA LFRTG+QSR +LV+A+N+P D A
Sbjct: 400 RKGLIVFIDEADAFLQKRSKNGMSEDTRAALNAFLFRTGEQSRKFMLVVASNQPEQFDWA 459
Query: 393 ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452
+ DR D+++EF LP EER ++L Y +++ + S + Q++ + +
Sbjct: 460 VNDRFDQLVEFTLPGMEERERILLQYFNEHIVTPATSGS----------RSQRLKLDNF- 508
Query: 453 DNV--IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF-REVVEYKVEEHHQ 508
D V E A+KT G SGRE++KL+ QA+ YA VL + R + V+ H+
Sbjct: 509 DWVAKCNEVAKKTSGMSGRELSKLVIGWQASAYASETGVLTEAIVDRNTADAMVQHEHK 567
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 192/503 (38%), Positives = 289/503 (57%), Gaps = 39/503 (7%)
Query: 21 AEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 77
AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E
Sbjct: 111 AEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEA 167
Query: 78 ARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 137
RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 168 LRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTILE---- 223
Query: 138 EREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNR 197
+I T + EG R+ +TD +K+ TV G T LA GIY+ + V Y+
Sbjct: 224 -------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGIYSAKNATSVAGRYIEA 276
Query: 198 ILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRR 257
LG+PSL+RE+S + +A+ I+ + P +A++ ++L PSL+ R
Sbjct: 277 RLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSKPQDALEG---VVLSPSLEAR 326
Query: 258 IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ 317
++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+G
Sbjct: 327 VRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGRD 386
Query: 318 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 377
VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L RTG S
Sbjct: 387 GVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQHSSKF 446
Query: 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437
+LVLA+N+P D AI DRIDE++ F LP+ EER +L+++Y KY+ +
Sbjct: 447 MLVLASNQPEQFDWAINDRIDEMVSFELPQREERERLVRMYFDKYVLKPATEG------- 499
Query: 438 LFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 497
KQ+ K+ D E A+ TEG SGREI++L + QA YA D VL +
Sbjct: 500 ---KQRLKLAQFDYGKKC-SEIAQLTEGMSGREISQLAVAWQAMAYASEDGVLTEAMMDA 555
Query: 498 VVEYKVEEHHQRIK-LAAEGSQP 519
V+ +++H Q+++ L AEGSQP
Sbjct: 556 RVQDAIQQHRQKMQWLKAEGSQP 578
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 191/503 (37%), Positives = 288/503 (57%), Gaps = 39/503 (7%)
Query: 18 RKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIR 74
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES +
Sbjct: 157 RAQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQK 213
Query: 75 KEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIER 134
+E RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 214 QEAMRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLE- 272
Query: 135 INGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGY 194
+I T + EG R+ +TD +K+ TV G T LA G+Y+ + V +
Sbjct: 273 ----------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRF 322
Query: 195 VNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSL 254
+ LG+PSL+RE+S + +A+ I+ + P +A++ ++L PSL
Sbjct: 323 IEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSRPQDALEG---VVLSPSL 372
Query: 255 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL 314
+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+
Sbjct: 373 EARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPM 432
Query: 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374
G + VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L+RTG S
Sbjct: 433 GREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHS 492
Query: 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 434
+LVLA+N+P D AI DRI+E++ F LP +EER +L+++Y KY+ +
Sbjct: 493 NKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERERLVRMYFDKYVLKPATEG---- 548
Query: 435 WGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494
KQ+ K+ D E AR TEG SGREIA+L S QA YA D VL +
Sbjct: 549 ------KQRLKLAQFDYGRKC-SEVARLTEGMSGREIAQLAVSWQATAYASEDGVLTEAM 601
Query: 495 FREVVEYKVEEHHQRIK-LAAEG 516
V+ V++H Q++ L AEG
Sbjct: 602 MDTRVQDAVQQHQQKMCWLKAEG 624
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 185/497 (37%), Positives = 284/497 (57%), Gaps = 44/497 (8%)
Query: 21 AEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 77
AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E
Sbjct: 111 AEERRKTLTEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEA 167
Query: 78 ARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 137
RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 168 IRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILE---- 223
Query: 138 EREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNR 197
+I T + + EG R+ +TD +K+ TV G T LA G+Y+ + V Y+
Sbjct: 224 -------SIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEA 276
Query: 198 ILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSL 254
LG+PSL+RE+S ++ + +R+ + P +A++ +IL PSL
Sbjct: 277 RLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VILSPSL 323
Query: 255 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL 314
+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+
Sbjct: 324 EARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPM 383
Query: 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374
G + VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L RTG S
Sbjct: 384 GREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQHS 443
Query: 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 434
+LVLA+N+P D AI DRIDE++ F LP+ EER +L+++Y KY+ +
Sbjct: 444 SKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPATEG---- 499
Query: 435 WGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494
KQ+ K+ D E A+ TEG SGREIA+L + QA Y+ D VL +
Sbjct: 500 ------KQRLKVAQFDYGKKC-SEVAQLTEGMSGREIAQLAVAWQAMAYSSEDGVLTEAM 552
Query: 495 FREVVEYKVEEHHQRIK 511
V+ V++H Q+++
Sbjct: 553 MDARVQDAVQQHQQKMQ 569
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 282/497 (56%), Gaps = 44/497 (8%)
Query: 21 AEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 77
AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E
Sbjct: 111 AEERRKTLNEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEA 167
Query: 78 ARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 137
RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 168 IRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILE---- 223
Query: 138 EREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNR 197
+I T + EG R+ +TD +K+ TV G T LA G+Y+ + V Y+
Sbjct: 224 -------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEA 276
Query: 198 ILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSL 254
LG+PSL+RE+S ++ + +R+ + P +A++ +IL PSL
Sbjct: 277 RLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VILSPSL 323
Query: 255 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL 314
+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+
Sbjct: 324 EARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPM 383
Query: 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374
G + VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L RTG S
Sbjct: 384 GREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQHS 443
Query: 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 434
+LVLA+N+P D AI DRIDE++ F LP+ EER +L+++Y KY+ +
Sbjct: 444 NKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPATEG---- 499
Query: 435 WGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494
KQ+ K+ D E A+ T G SGREIA+L + QA Y+ D VL +
Sbjct: 500 ------KQRLKVAQFDYGKKC-SEVAQLTAGMSGREIAQLAVAWQAMAYSSEDGVLTEAM 552
Query: 495 FREVVEYKVEEHHQRIK 511
V+ V++H Q+++
Sbjct: 553 MDARVQDAVQQHQQKMQ 569
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 187/503 (37%), Positives = 288/503 (57%), Gaps = 39/503 (7%)
Query: 18 RKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIR 74
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES +
Sbjct: 109 RAQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQK 165
Query: 75 KEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIER 134
+E RR+T ++ + L K E +RV+ EA RA + D R + +
Sbjct: 166 QEAMRRAT---VEREMELRHKN------EMLRVET--EARARAKAERENADIIREQIRLK 214
Query: 135 INGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGY 194
+ R+ L +I T + EG R+ +TDR+K+ TV G T LA G+Y+ + VT +
Sbjct: 215 ASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGRF 274
Query: 195 VNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSL 254
+ LG+PSL+RE+S + +A+ I+ + P + ++ ++L PSL
Sbjct: 275 IEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSRPQDVLEG---VVLSPSL 324
Query: 255 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL 314
+ R++ +A AT NTK ++ +R++L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+
Sbjct: 325 EARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPM 384
Query: 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374
G + VT +H++FDWA S++GLLLF+DEADAFL +R + +S+ R+ LNA L+ G S
Sbjct: 385 GREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQHS 444
Query: 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 434
+LVLA+N P D AI RID ++ F LP++EER +L++L+ + +
Sbjct: 445 NKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEG---- 500
Query: 435 WGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494
K++ K+ D E AR TEG SGREIA+L S QA YA D VL +
Sbjct: 501 ------KRRLKLAQFDYGRKC-SEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAM 553
Query: 495 FREVVEYKVEEHHQRIK-LAAEG 516
V+ V+++ Q+++ L AEG
Sbjct: 554 MDACVQDAVQQYRQKMRWLKAEG 576
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 229/392 (58%), Gaps = 21/392 (5%)
Query: 133 ERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTW 192
E + + +L +I + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 37 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG 96
Query: 193 GYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHP 252
Y+ LG+PSL+RE+S + +A+ I+ + + P + ++ ++L P
Sbjct: 97 RYIEARLGKPSLVRETS------RITVLEALRHPIQQVSRRLLSRPQDVLEG---VVLSP 147
Query: 253 SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 312
SL+ R++ +A T N K ++ +R++L YGPPGTGKT+ A+++A SG+DYA+MTGGDVA
Sbjct: 148 SLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 207
Query: 313 PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372
P+G + VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L+RTG
Sbjct: 208 PMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQ 267
Query: 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSS 432
S +L+LA+ P D AI ID ++ F LP +EER +L+++YL +Y+ +
Sbjct: 268 HSNKFMLILASCHPEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEG-- 325
Query: 433 LKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDS 492
K++ K+ D + E AR TEG S R+IA+L S QA YA D VL
Sbjct: 326 --------KRRLKLAQFDYGRKCL-EIARLTEGMSCRKIAQLAVSWQATAYASKDGVLTE 376
Query: 493 QLFREVVEYKVEEHHQRIK-LAAEGSQPTKNQ 523
+ V+ V++H Q ++ L E P Q
Sbjct: 377 AMMDACVQDFVQQHQQMMRWLKGERPGPEDEQ 408
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 37/232 (15%)
Query: 247 DIILHPSLQRRIQHLAKATANTKIH--QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA 304
+II +++ + + K N K+ AP +N+LFYGPPGTGKT++AR +A ++ +
Sbjct: 125 EIIGQEEAKKKCRIIMKYLENPKLFGEWAP-KNVLFYGPPGTGKTLMARALATETNSSFI 183
Query: 305 MMTGGDVAPLG---AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRS 361
++ ++ +G A I E++ A +S ++FIDE DA R +
Sbjct: 184 LVKAPEL--IGEHVGDASKMIRELYQRASESAP-CIVFIDELDAIGLSREYQSLRGDVSE 240
Query: 362 ALNALLFRTG--DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYL 419
+NALL ++ +V + ATN P LD AI R +E IEF LP +EER K+++LY
Sbjct: 241 VVNALLTELDGIKENEGVVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIMELYA 300
Query: 420 KKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 471
KK + + ++E KT+GFSGR+I
Sbjct: 301 KKMPLPVKAN--------------------------LKEFVEKTKGFSGRDI 326
>sp|P32795|YME1_YEAST Mitochondrial inner membrane i-AAA protease supercomplex subunit
YME1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YME1 PE=1 SV=1
Length = 747
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 37/215 (17%)
Query: 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG--DVAPLGAQAVTKIHEIFDWAKKSK 333
+ +L GPPGTGKT++AR A ++G+D+ M+G D +G A +I ++F A +S+
Sbjct: 315 KGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGA-KRIRDLFAQA-RSR 372
Query: 334 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 391
++FIDE DA +RN + A+++ LN LL Q+ I+++ ATN P LD
Sbjct: 373 APAIIFIDELDAIGGKRNPKDQAYAKQT-LNQLLVELDGFSQTSGIIIIGATNFPEALDK 431
Query: 392 AIT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449
A+T R D+V+ LP R +LK ++K KIT+
Sbjct: 432 ALTRPGRFDKVVNVDLPDVRGRADILKHHMK------------------------KITLA 467
Query: 450 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 484
D D I AR T G SG E+A L+ QAAVYA
Sbjct: 468 DNVDPTI--IARGTPGLSGAELANLVN--QAAVYA 498
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 268 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIF 326
T+I P + +L YGPPGTGKT++A+ +A ++ + + G + V + + E+F
Sbjct: 205 TQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF 264
Query: 327 DWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLA 382
D AKK K ++FIDE DA R + S E QR+ + L G ++R D+ ++ A
Sbjct: 265 DLAKK-KAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGA 323
Query: 383 TNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLK 420
TNR LD A+ R D +IE PLP EE R +LK++ +
Sbjct: 324 TNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTR 363
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFD 327
KI P + +L +GPPGTGKT++A+ +A +SG ++ + G ++ + ++ I EIF
Sbjct: 480 KIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFR 539
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL--FRTGDQSRDIVLVLATNR 385
A++S ++F DE DA +R S +N LL ++ +D+V++ ATNR
Sbjct: 540 KARQSAP-CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNR 598
Query: 386 PGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 443
P +D A+ R+D VI P+P E+ R + K++ +
Sbjct: 599 PDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSM--------------------- 637
Query: 444 QKITIKDLSDNV-IQEAARKTEGFSGREIAKL 474
+L+++V ++E A+KTEG++G +I L
Sbjct: 638 ------NLAEDVNLEELAKKTEGYTGADIEAL 663
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFD 327
K+ P + +L GPPGTGKT++A+ +A ++G ++ ++ G ++ + + + +IF+
Sbjct: 207 KLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFE 266
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRP 386
A+++ ++FIDE DA +R+ +R L G + R V+V+ ATNRP
Sbjct: 267 EAEENAPS-IIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRP 325
Query: 387 GDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 433
LD A+ R D I +P E R ++L+++ + +++ D L
Sbjct: 326 NALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYL 374
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 127/267 (47%), Gaps = 49/267 (18%)
Query: 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 309
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 492 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
Query: 310 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER-NSI-HMSEAQRSALNAL 366
++ + ++ + EIFD A++S +LF DE D+ +R NS A LN L
Sbjct: 549 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGNSAGDAGGAADRVLNQL 607
Query: 367 LFRT-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKY 422
L G ++ V ++ ATNRP +DSA+ R+D++I PLP E+ R + K L+K
Sbjct: 608 LTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKS 667
Query: 423 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482
+ + D ++L A+ T+GFSG +I ++ +A
Sbjct: 668 PVAKDVDVTAL--------------------------AKYTQGFSGADITEICQ--RACK 699
Query: 483 YARPDCVLDSQLFREVVEYKVEEHHQR 509
YA RE +E +E +R
Sbjct: 700 YA----------IRENIEKDIENERRR 716
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 90/160 (56%), Gaps = 5/160 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+ A+K+
Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE D+ +R + +R L G +SR V+V+ ATNRP +D
Sbjct: 300 APS-IIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 358
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
A+ R D I+ +P E R ++L+++ K +++ D
Sbjct: 359 ALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVD 398
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 49/267 (18%)
Query: 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 309
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 493 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 549
Query: 310 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER-NSI-HMSEAQRSALNAL 366
++ + ++ + EIFD A++S +LF DE D+ +R NS+ A LN L
Sbjct: 550 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGNSVGDAGGAADRVLNQL 608
Query: 367 LFRT-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKY 422
L G ++ V ++ ATNRP +D A+ R+D++I PLP EE R+++ K L+K
Sbjct: 609 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKS 668
Query: 423 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482
+ + D +L A+ T+GFSG +I ++ ++
Sbjct: 669 PVAKDVDLRAL--------------------------AKYTQGFSGADITEICQ--RSCK 700
Query: 483 YARPDCVLDSQLFREVVEYKVEEHHQR 509
YA RE +E +E+ +R
Sbjct: 701 YA----------IRENIEKDIEKERKR 717
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+ A+K+
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE D+ +R H +R L G +SR V+V+ ATNRP +D
Sbjct: 301 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 359
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLK 420
A+ R D I+ +P E R ++L+++ K
Sbjct: 360 ALRRFGRFDREIDIGVPDEIGRLEVLRIHTK 390
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 131/272 (48%), Gaps = 50/272 (18%)
Query: 222 AMNKVIRNKTSAG-TAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLF 280
A NK N+ G AG EA GDII + L + P + ++
Sbjct: 134 AKNKKAENRVKLGDVAGNAEAKSMVGDIIDFIKEPEKYSALGA--------RMP-KGVML 184
Query: 281 YGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL--GAQAVTKIHEIFDWAKKSKKGLLL 338
YGPPGTGKT++A+ IA ++G+ + M+G D + G A ++I +F+ AKKS+K ++
Sbjct: 185 YGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMYVGVGA-SRIRTLFNKAKKSEKA-VI 242
Query: 339 FIDEADAFLCER-NSIHMSEAQRS-ALNALLFRTGD--QSRDIVLVLATNRPGDLDSAI- 393
FIDE DA +R S S +R LNALL +++ IV++ ATNR LD A+
Sbjct: 243 FIDEIDAIGKKRARSTSASNDERDQTLNALLTEMSGFHENKGIVVIGATNRLDTLDEALL 302
Query: 394 -TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452
R D IE LP R K+LKLY GD K L
Sbjct: 303 RPGRFDRQIEVGLPDILARKKILKLY---------GDK------------------KPLG 335
Query: 453 DNV-IQEAARKTEGFSGREIAKLM--ASVQAA 481
D+V ++ A+ T FSG + L+ A++QAA
Sbjct: 336 DDVDLEVLAKNTVSFSGAMLENLLNEAAIQAA 367
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 35/212 (16%)
Query: 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL-GAQAVTKIHEIFDWAKKSKK 334
+ +L YGPPG GKT++A+ IA + ++ + G ++ + ++ + ++FD A ++
Sbjct: 969 KGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKA-RAAS 1027
Query: 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 392
++F DE D+ ERNS ++A +N +L ++ + I ++ ATNRP LD A
Sbjct: 1028 PCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 1087
Query: 393 IT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450
+T R+D++I LP + R+ + K LK +++ D
Sbjct: 1088 LTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVD--------------------- 1126
Query: 451 LSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482
I + A++TEGFSG +I L Q+AV
Sbjct: 1127 -----IHDMAKRTEGFSGADITNL---CQSAV 1150
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 40/259 (15%)
Query: 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--LGAQAVTKIHEIFDWAK 330
AP + +L +G PGTGKT +A+ IA +S ++ G ++ +G ++ K+ +IF A
Sbjct: 560 AP-KGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIG-ESEQKLRKIFKKAS 617
Query: 331 KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDL 389
+ K ++FIDE D+ +R+ + +R L G + + VLVL ATNRP +
Sbjct: 618 E-KTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSI 676
Query: 390 DSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 447
D A+ R D IE P+P E+ R+++L L K ++ K+
Sbjct: 677 DPALRRFGRFDREIEIPVPDEQGRYEIL----------------------LTKTKKMKLD 714
Query: 448 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV----LDSQLFREVVEYKV 503
D +++ A++ G+ G ++A+L +AA+ + + LD + F E ++ V
Sbjct: 715 ----PDVNLRKIAKECHGYVGADLAQL--CFEAAIQCIKEHIHFLDLDEEDFIEFMKISV 768
Query: 504 EEHHQRIKLAAEGSQPTKN 522
+E + + GS T N
Sbjct: 769 DEDKKNMGNEPYGSSHTNN 787
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 41/243 (16%)
Query: 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 309
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 493 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549
Query: 310 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA---LNA 365
++ + ++ + EIFD A++S +LF DE D+ +R S + +A +A LN
Sbjct: 550 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGS-SVGDAGGAADRVLNQ 607
Query: 366 LLFRTGDQS--RDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
LL S + + ++ ATNRP +D A+ R+D++I PLP E+ R ++ K L+K
Sbjct: 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK 667
Query: 422 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 481
+ D +L AR T+GFSG +I ++ +A
Sbjct: 668 SPIAKNVDLRAL--------------------------ARHTQGFSGADITEICQ--RAC 699
Query: 482 VYA 484
YA
Sbjct: 700 KYA 702
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 90/160 (56%), Gaps = 5/160 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+ A+K+
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE D+ +R H +R L G +SR V+V+ ATNRP +D
Sbjct: 301 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
A+ R D I+ +P E R ++L+++ K SD+ D
Sbjct: 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVD 399
>sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1
Length = 613
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 36/211 (17%)
Query: 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK----IHEIFD 327
+AP R +L +GPPG GKTM+A+ +A +S + ++ A L ++ V + + +F
Sbjct: 369 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFA 425
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS--RDIVLVL-ATN 384
A++ + ++FIDE D+ LCER ++R L+ G QS D +LV+ ATN
Sbjct: 426 VARELQPS-IIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATN 484
Query: 385 RPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 444
RP +LD A+ R + + LP EE R LLK +L KQ
Sbjct: 485 RPQELDDAVLRRFTKRVYVSLPNEETRLILLK--------------------NLLSKQGS 524
Query: 445 KITIKDLSDNVIQEAARKTEGFSGREIAKLM 475
+T K+L+ + AR T+G+SG ++ L+
Sbjct: 525 PLTQKELA-----QLARMTDGYSGSDLTALV 550
>sp|Q6AZT2|SPAST_XENLA Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
Length = 600
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 36/210 (17%)
Query: 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK----IHEIFD 327
+AP R +L +GPPG GKTM+A+ +A +S + ++ A L ++ V + + +F
Sbjct: 356 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFS 412
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS--RDIVLVL-ATN 384
A++ + ++FIDE D+ LCER ++R L+ G QS D VLV+ ATN
Sbjct: 413 VARELQPS-IIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATN 471
Query: 385 RPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 444
RP +LD A+ R + + LP EE R LLK +L KQ
Sbjct: 472 RPQELDDAVLRRFTKRVYVALPNEETRLVLLK--------------------NLLSKQGN 511
Query: 445 KITIKDLSDNVIQEAARKTEGFSGREIAKL 474
++ K+L+ + +R TEG+SG +I L
Sbjct: 512 PLSEKELT-----QLSRLTEGYSGSDITAL 536
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 50/268 (18%)
Query: 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 309
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 492 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
Query: 310 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRS---ALNA 365
++ + ++ + EIFD A++S +LF DE D+ +R + + LN
Sbjct: 549 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGGGSGGDGGGAADRVLNQ 607
Query: 366 LLFRT-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
LL G ++ V ++ ATNRP +DSA+ R+D++I PLP E+ R + K L+K
Sbjct: 608 LLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRK 667
Query: 422 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 481
+ + D +L A+ T+GFSG +I ++ +A
Sbjct: 668 SPIAKDVDIGAL--------------------------AKYTQGFSGADITEICQ--RAC 699
Query: 482 VYARPDCVLDSQLFREVVEYKVEEHHQR 509
YA RE +E +E+ +R
Sbjct: 700 KYA----------IRENIEKDIEKEKRR 717
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 90/160 (56%), Gaps = 5/160 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+ A+K+
Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE D+ +R + +R L G +SR V+V+ ATNRP +D
Sbjct: 300 APS-IIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 358
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
A+ R D I+ +P E R ++L+++ K +++ D
Sbjct: 359 ALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVD 398
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 40/242 (16%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + + +IF
Sbjct: 198 KVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFK 257
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA +R E QR+ + L G +R D+ ++ AT
Sbjct: 258 LAKE-KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 316
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 441
NRP LD AI R D +IE P P E+ R ++LK++ +K
Sbjct: 317 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM------------------- 357
Query: 442 QQQKITIKDLSDNV-IQEAARKTEGFSGREIAKLM--ASVQAAVYARPDCVLDSQLFREV 498
+L+++V ++E A+ TEG G E+ + A + A R +D FR+
Sbjct: 358 --------NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD--FRKA 407
Query: 499 VE 500
VE
Sbjct: 408 VE 409
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 261 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAV 319
L K K+ +P + +L YGPPGTGKT++AR +A ++ + + G + V +
Sbjct: 173 LTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGA 232
Query: 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSR 375
+ E+FD AK+ ++FIDE DA RN S E QR+ + L G D
Sbjct: 233 RLVRELFDLAKQRAPS-IIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRG 291
Query: 376 DIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLY 418
D+ +V ATNR LD A+ R D +IE PLP + R +LK++
Sbjct: 292 DVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIH 336
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
NRP LD AI R D +IE +P E+ R ++LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEK 334
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
NRP LD AI R D +IE +P E+ R ++LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEK 334
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 35/260 (13%)
Query: 268 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIF 326
+KI P + +L YGPPGTGKT++AR IA ++G ++ G ++ + + ++ + + + F
Sbjct: 235 SKIGVKPPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAF 294
Query: 327 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL-FRTGDQSRDIVLVL-ATN 384
+ A+K+ ++FIDE DA +R E +R ++ LL G ++R V+VL ATN
Sbjct: 295 EEAEKNSPA-IIFIDEIDALAPKREK-SQGEVERRIVSQLLTLMDGMKARSNVIVLGATN 352
Query: 385 RPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ 442
RP +D A+ R D IE +P E R ++L+++ K S++ D ++
Sbjct: 353 RPNSIDPALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSEDVDLVAIN-------- 404
Query: 443 QQKITIKDLSDNVIQEAARKTEGFSGREIAKLM--ASVQAAVYARPDCVLDSQLFREVVE 500
++ GF+G ++A L A++Q P LDS+ V
Sbjct: 405 ------------------KELHGFTGSDLASLCSEAALQQIREKLPQIDLDSEKIDAKVL 446
Query: 501 YKVEEHHQRIKLAAEGSQPT 520
++ + + + A E + P+
Sbjct: 447 ASLKVNSENFRYAIEHTDPS 466
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL-GAQAVTKIHEIFD 327
K P + +LFYGPPG GKT++A+ +A + ++ + G ++ + ++ + I ++F
Sbjct: 509 KFGMTPAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFA 568
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSE-AQRSALNALLFRTG--DQSRDIVLVLATN 384
A+ + +LF DE D+ R+ S A LN LL +Q +++ ++ ATN
Sbjct: 569 RARGAAP-CVLFFDEIDSIAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATN 627
Query: 385 RPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
RP LDSA+ R+D+++ PLP + R +L+ LKK S E D
Sbjct: 628 RPDQLDSALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEID 674
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 38/224 (16%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
KI P + +L YGPPGTGKT++A+ +A ++ + G + V + + E+FD
Sbjct: 181 KIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFD 240
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA R S E QR+ + L G + R D+ ++ AT
Sbjct: 241 LAKE-KAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGAT 299
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 441
NR LD+A+ R D +IE PLP E R+ +LK++ + C
Sbjct: 300 NRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTR---C----------------- 339
Query: 442 QQQKITIKDLSDNV-IQEAARKTEGFSGREIAKLMASVQAAVYA 484
+LS++V + E AR TEG +G E+ + ++A ++A
Sbjct: 340 -------MNLSEDVDLMEVARLTEGRNGAELNAI--CMEAGMFA 374
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
NRP LD AI R D +IE +P E+ R +LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEK 334
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
K+ P + +L YGPPGTGKT++A+ +AR++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
NRP LD AI R D +IE P E+ R ++ K++ K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDK 334
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 327
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 383
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
NRP LD AI R D +IE +P E+ R +LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEK 334
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 47/264 (17%)
Query: 254 LQRRIQHLAKATAN-TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 312
LQ +Q+ + K +P + +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 493 LQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552
Query: 313 PL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFR 369
+ ++ + EIFD A++S +LF DE D+ +R S A LN LL
Sbjct: 553 TMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTE 611
Query: 370 T-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 425
G ++ V ++ ATNRP +D A+ R+D++I PLP E+ R ++ K L+K S
Sbjct: 612 MDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLS 671
Query: 426 DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 485
+ D +L A+ T+GFSG ++ ++ +A YA
Sbjct: 672 KDIDLRAL--------------------------AKHTQGFSGADVTEICQ--RACKYA- 702
Query: 486 PDCVLDSQLFREVVEYKVEEHHQR 509
RE +E +E +R
Sbjct: 703 ---------IRENIEKDIEREKRR 717
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 5/160 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+ A+K+
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE D+ +R H +R L G +SR V+V+ ATNRP +D
Sbjct: 301 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 359
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
A+ R D I+ +P E R ++L ++ K ++E D
Sbjct: 360 ALRRFGRFDREIDIGVPDEVGRLEVLGIHTKNMKLAEEVD 399
>sp|Q9P7J5|YJNA_SCHPO Uncharacterized AAA domain-containing protein C24B10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC24B10.10c PE=3 SV=1
Length = 355
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 14/154 (9%)
Query: 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKSKK 334
+ +L YGPPG GKTM+A+ +A++S + ++ G + ++ + +F A+K +
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEP 185
Query: 335 GLLLFIDEADAFLCERN-SIHMSEAQ-----RSALNALLFRTGDQSRDIVLVL-ATNRPG 387
++ FIDE D FL +R + H + AQ S + LL QSR VLVL ATNRP
Sbjct: 186 TII-FIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLL---SGQSR--VLVLGATNRPA 239
Query: 388 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKK 421
D+D AI R+ +V PLP E+R K+L+LYLKK
Sbjct: 240 DIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKK 273
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 52/275 (18%)
Query: 227 IRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGT 286
IR AG G EA+K + ++ P + HL + P+R +L +GPPGT
Sbjct: 124 IRWNDVAGLEGAKEALK---EAVILPI---KFPHLFTG------KRTPWRGILLFGPPGT 171
Query: 287 GKTMVAREIARKSGLD--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 344
GK+ +A+ +A ++ +++ + ++ ++ + +F+ A++ K ++ FIDE D
Sbjct: 172 GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSII-FIDEVD 230
Query: 345 AFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 401
+ RN + SEA R L + G+ + +++ ATN P LDSAI R ++ I
Sbjct: 231 SLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRI 289
Query: 402 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 461
PLP E R ++ +L+L T +L+D I E AR
Sbjct: 290 YIPLPEEAARAQMFRLHLGS-------------------------TPHNLTDANIHELAR 324
Query: 462 KTEGFSGREIAKLMAS--------VQAAVYARPDC 488
KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 52/275 (18%)
Query: 227 IRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGT 286
IR AG G EA+K + ++ P + HL + P+R +L +GPPGT
Sbjct: 124 IRWNDVAGLEGAKEALK---EAVILPI---KFPHLFTG------KRTPWRGILLFGPPGT 171
Query: 287 GKTMVAREIARKSGLD--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 344
GK+ +A+ +A ++ +++ + ++ ++ + +F+ A++ K ++ FIDE D
Sbjct: 172 GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSII-FIDEVD 230
Query: 345 AFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 401
+ RN + SEA R L + G+ + +++ ATN P LDSAI R ++ I
Sbjct: 231 SLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRI 289
Query: 402 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 461
PLP E R ++ +L+L T +L+D I E AR
Sbjct: 290 YIPLPEEAARAQMFRLHLGS-------------------------TPHNLTDANIHELAR 324
Query: 462 KTEGFSGREIAKLMAS--------VQAAVYARPDC 488
KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 52/275 (18%)
Query: 227 IRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGT 286
IR AG G EA+K + ++ P + HL + P+R +L +GPPGT
Sbjct: 124 IRWNDVAGLEGAKEALK---EAVILPI---KFPHLFTG------KRTPWRGILLFGPPGT 171
Query: 287 GKTMVAREIARKSGLD--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 344
GK+ +A+ +A ++ +++ + ++ ++ + +F+ A++ K ++ FIDE D
Sbjct: 172 GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSII-FIDEVD 230
Query: 345 AFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 401
+ RN + SEA R L + G+ + +++ ATN P LDSAI R ++ I
Sbjct: 231 SLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRI 289
Query: 402 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 461
PLP E R ++ +L+L T +L+D I E AR
Sbjct: 290 YIPLPEEAARAQMFRLHLGS-------------------------TPHNLTDANIHELAR 324
Query: 462 KTEGFSGREIAKLMAS--------VQAAVYARPDC 488
KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 40/245 (16%)
Query: 254 LQRRIQHLAKATANTKIHQA--------PFRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305
L+++IQ L +A HQ P + +L YGPPGTGKT++AR A ++ +
Sbjct: 175 LEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 234
Query: 306 MTGGDVAPL----GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EA 358
+ G + + GA+ V + F AK+ K ++FIDE DA +R +S E
Sbjct: 235 LAGPQLVQMFIGDGAKLV---RDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREV 290
Query: 359 QRSALNALLFRTGDQSRD-IVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLL 415
QR+ L L G S D I ++ ATNR LD A+ + R+D IEFP P EE R ++L
Sbjct: 291 QRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350
Query: 416 KLYLKKYLC------------SDEGDSSSLK-----WGHL-FKKQQQKITIKDLSDNVIQ 457
+++ +K +D+ + + LK G L ++ ++T +D ++ +IQ
Sbjct: 351 QIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQ 410
Query: 458 EAARK 462
A+K
Sbjct: 411 VQAKK 415
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 145/304 (47%), Gaps = 50/304 (16%)
Query: 251 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 310
HPSL + I P R +L YGPPGTGKT++AR +A ++G + ++ G +
Sbjct: 223 HPSLFK------------AIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPE 270
Query: 311 V-APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNAL--L 367
+ + L ++ + + + F+ A+K+ ++FIDE DA +R+ H E +R ++ L L
Sbjct: 271 IMSKLAGESESNLRKAFEEAEKNSPA-IIFIDEIDAIAPKRDKTH-GEVERRIVSQLLTL 328
Query: 368 FRTGDQSRDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 425
+S ++++ ATNRP +D A+ R D I+ +P R ++L+++ K
Sbjct: 329 MDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLH 388
Query: 426 DEGDSSSL---KWGHL------------FKKQQQKITIKDLSDN-----VIQEAARKTEG 465
D+ D + GH+ ++ ++K+ + DL D+ V+ A E
Sbjct: 389 DDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMEN 448
Query: 466 FSGREIAKLMASVQAAVYARPDCV------LDS--QLFREVVEYKVEEHHQRIKLAAEGS 517
F ++++ V P+ L+S + +E+V+Y VE + +K G
Sbjct: 449 FRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKF---GM 505
Query: 518 QPTK 521
QP++
Sbjct: 506 QPSR 509
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 37/228 (16%)
Query: 254 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313
+Q ++H K K P R +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 490 VQYPVEHPDKFL---KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 546
Query: 314 L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER--NSIHMSEAQRSALNALLFRT 370
+ ++ + +IFD A +S +LF DE D+ R N A +N +L
Sbjct: 547 MWFGESEANVRDIFDKA-RSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEM 605
Query: 371 GDQS--RDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSD 426
+++ ++ ATNRP +D AI R+D++I PLP ++ R +LK L+K +
Sbjct: 606 DGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAK 665
Query: 427 EGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 474
E D + + A+ T+GFSG ++ ++
Sbjct: 666 EVDLTYI--------------------------AKVTQGFSGADLTEI 687
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 135/280 (48%), Gaps = 36/280 (12%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P R +L +GPPGTGKT++AR +A ++G + ++ G +V + + ++ + + + F+ +K+
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR-DIVLVLATNRPGDLDS 391
+ +LFIDE DA +R + +R L G + R ++V++ ATNRP +D
Sbjct: 303 QPA-ILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDG 361
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDE---------------GDSSSLK 434
A+ R D I+ +P R ++L+++ K +D+ D +SL
Sbjct: 362 ALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLC 421
Query: 435 WGHLFKKQQQKITIKDLSDN-----VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 489
++ ++K+ + DL D+ V+ A E F + ++++ AV P+
Sbjct: 422 SEAALQQIREKMELIDLEDDQIDAEVLNSLAVTMENFRFAQGKSSPSALREAVVETPNTT 481
Query: 490 LDS--------QLFREVVEYKVEEHHQRIKLAAEGSQPTK 521
+ +E+V+Y VE + +K G QP++
Sbjct: 482 WSDIGGLQNVKRELQELVQYPVEHPEKYLKF---GMQPSR 518
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 254 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313
+Q ++H K K P R +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 499 VQYPVEHPEKYL---KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 555
Query: 314 L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA---LNALLFR 369
+ ++ + ++FD A+ + +LF DE D+ R + ++ +N +L
Sbjct: 556 MWFGESEANVRDVFDKARAAAP-CVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTE 614
Query: 370 TG--DQSRDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 425
+ +++ ++ ATNRP +D A+ R+D++I PLP E R ++LK L+K S
Sbjct: 615 MDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLS 674
Query: 426 DEGDSSSL 433
+ D + L
Sbjct: 675 KDLDLTFL 682
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 5/160 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE DA +R H +R L G + R V+V+ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
A+ R D ++ +P R ++L+++ K SD+ D
Sbjct: 356 ALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVD 395
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 37/228 (16%)
Query: 254 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313
+Q ++H K K P + +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 493 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549
Query: 314 L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER--NSIHMSEAQRSALNALLFRT 370
+ ++ + EIFD A+++ +LF DE D+ R N A +N +L
Sbjct: 550 MWFGESEANVREIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 371 GDQS--RDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSD 426
S +++ ++ ATNRP +D AI R+D++I PLP E+ R +LK L+K +
Sbjct: 609 DGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAK 668
Query: 427 EGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 474
+ D L A+ T GFSG ++ ++
Sbjct: 669 DVDVDFL--------------------------AKMTNGFSGADLTEI 690
>sp|Q9SSB4|PRS7B_ARATH 26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana
GN=RPT1B PE=2 SV=2
Length = 464
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPG+GKT+VAR +A ++G + + G + V + + E+F A +S
Sbjct: 238 PPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMA-RS 296
Query: 333 KKGLLLFIDEADAFLCERNSIHM---SEAQRSALNALLFRTGDQSR-DIVLVLATNRPGD 388
KK +LF DE DA R + +E QR+ L L G +R +I +++ATNRP
Sbjct: 297 KKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDI 356
Query: 389 LDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLC 424
LD A+ R+D +EF LP E R ++ K++ + C
Sbjct: 357 LDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSC 394
>sp|Q980M1|PAN_SULSO Proteasome-activating nucleotidase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pan
PE=3 SV=1
Length = 393
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 36/223 (16%)
Query: 269 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFD 327
+I P + +L YGPPGTGKTM+A+ +A +S + + + A + + E+F+
Sbjct: 162 EIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFE 221
Query: 328 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSRDIVLVLAT 383
AK+ K ++FIDE DA +R I S E QR+ + L G D ++ ++ AT
Sbjct: 222 MAKR-KAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAAT 280
Query: 384 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 441
NR LD A+ R D +IE PLP + R ++ +YLKK K
Sbjct: 281 NRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKM------------------K 322
Query: 442 QQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 484
+ I ++ LS + TEGFSG +I + V+AA A
Sbjct: 323 IEDNINLELLS--------QLTEGFSGADIKNV--CVEAAYMA 355
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 5/160 (3%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 332
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDLDS 391
++FIDE DA +R H +R L G + R V+V+ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 392 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
A+ R D ++ +P R ++L+++ K SD+ D
Sbjct: 356 ALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVD 395
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 254 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313
+Q ++H K K P + +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 493 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549
Query: 314 L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER--NSIHMSEAQRSALNALLFRT 370
+ ++ + EIFD A+++ +LF DE D+ R N A +N +L
Sbjct: 550 MWFGESEANVREIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 371 GDQS--RDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 421
S +++ ++ ATNRP +D AI R+D++I PLP E+ R +LK L+K
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRK 663
>sp|Q8LQJ9|FTSH4_ORYSJ ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH4 PE=3 SV=1
Length = 709
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 176/391 (45%), Gaps = 68/391 (17%)
Query: 107 VKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNK 166
VKA+ + + R ++ L + R M + GER +A+ + ++G+ L T
Sbjct: 105 VKALVKVD-RLDDSTLLKTLRRGMAVSGGEGERVGSSSALKSAGQATKDGI--LGTANAP 161
Query: 167 LVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGL-LSQAMNK 225
+ M I+ T +T+ ++ G +LI + I K GL LSQ +
Sbjct: 162 IHMVTSETGHFKDQIWRTFRSLALTFLVIS---GIGALIEDRGISK----GLGLSQEVQP 214
Query: 226 VIRNKTSAGTAGPVEAIKNNGDIILH----PSLQRRIQHLAKATANTKIHQAPFRNMLFY 281
++ +KT V+ K + I+H P +R HL + P + +L
Sbjct: 215 IMDSKTKFSDVKGVDEAKAELEEIVHYLRDP---KRFTHLGG--------KLP-KGVLLV 262
Query: 282 GPPGTGKTMVAREIARKSGLDYAMMTGGD----VAPLGAQAVTKIHEIFDWAKKSKKGLL 337
GPPGTGKTM+AR +A ++G+ + +G + +GA+ ++ ++F AKK + +
Sbjct: 263 GPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGAR---RVRDLFAAAKK-RSPCI 318
Query: 338 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAIT- 394
+F+DE DA RN + R LN LL Q+ I+++ ATN P LD A+
Sbjct: 319 IFMDEIDAIGGSRNPKD-QQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVR 377
Query: 395 -DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 453
R D I P P E R ++L+ ++ K L SD+ D
Sbjct: 378 PGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVD------------------------ 413
Query: 454 NVIQEAARKTEGFSGREIAKL--MASVQAAV 482
+ AR T GFSG ++A L +A+++AA+
Sbjct: 414 --LMIIARGTPGFSGADLANLVNVAALKAAM 442
>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana
GN=AAA1 PE=1 SV=1
Length = 523
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 38/212 (17%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKS 332
P++ +L +GPPGTGKT++A+ +A + G + ++ +A ++ + +FD A+
Sbjct: 271 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAY 330
Query: 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---------DQSRDIVLVL-A 382
+FIDE D+ R E+ R + LL + D SR IV+VL A
Sbjct: 331 APS-TIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAA 389
Query: 383 TNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ 442
TN P D+D A+ R+++ I PLP E R L+ + L+
Sbjct: 390 TNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLR---------------------- 427
Query: 443 QQKITIKDLSDNVIQEAARKTEGFSGREIAKL 474
T++ SD I++ AR+TEG+SG ++ +
Sbjct: 428 ----TVEVASDVNIEDVARRTEGYSGDDLTNV 455
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 113/244 (46%), Gaps = 47/244 (19%)
Query: 254 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG--DV 311
L+ + L T T++ R +L GPPGTGKTM+AR +A ++ + + M+G D
Sbjct: 279 LEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDE 338
Query: 312 APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN---SIHMSEAQRSALNALLF 368
+G A ++ E+F A+K ++FIDE DA +RN + HM R LN LL
Sbjct: 339 MYVGVGA-KRVRELFAAARKQAPS-IIFIDELDAIGQKRNARDAAHM----RQTLNQLLV 392
Query: 369 ------RTGDQSRDIVLVLATNRPGDLDSAIT--DRIDEVIEFPLPREEERFKLLKLYLK 420
+ D + +V + ATN P LD A+T R D I PLP R +
Sbjct: 393 DLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAI------ 446
Query: 421 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQA 480
L + + KD+ ++I AR T GF+G ++A L+ QA
Sbjct: 447 -----------------LLQHTRHVPLGKDVDLSII---ARGTSGFAGADLANLIN--QA 484
Query: 481 AVYA 484
AVYA
Sbjct: 485 AVYA 488
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 261 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAV 319
L K KI P + +L YGPPGTGKT++A+ +A ++ + + + V +
Sbjct: 171 LKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGA 230
Query: 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR- 375
+ +F+ AK+ K ++FIDE DA +R S E QR+ + L G +SR
Sbjct: 231 RLVRGVFELAKE-KSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRG 289
Query: 376 DIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 429
++ +V ATNRP LD A+ R D IE PLP E+ R ++LK++ ++E D
Sbjct: 290 NVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVD 345
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYA-MMTGGDVAPLGAQAVTKIHEIFDWAKKS 332
P + +L YGPPGTGKT++AR +A G+++ +++ V ++ I E+F +AK+
Sbjct: 165 PPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEH 224
Query: 333 KKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSRDIVLVLATNRPGD 388
+ ++F+DE DA R S S E QR+ + L G D +++ATNRP
Sbjct: 225 EP-CVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDT 283
Query: 389 LDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 433
LD A+ R+D IE PLP E R ++LK++L+K E D +L
Sbjct: 284 LDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEAL 330
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)
Query: 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 332
P +L YGPPGTGKTM+A+ +A ++ + M G + V + + ++F+ A+++
Sbjct: 183 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 242
Query: 333 KKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSRDIVLVLATNRPGD 388
+ ++FIDE DA +R S E QR+ + L G D+ +I ++ ATNR
Sbjct: 243 EPA-VIFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLAEMDGFDERGNIRIIAATNRFDM 301
Query: 389 LDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 433
LD AI R D +IE P P E+ R + +++ +K SD+ D L
Sbjct: 302 LDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVEL 348
>sp|C3N7K8|PAN_SULIY Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1
Length = 393
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 26/220 (11%)
Query: 261 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAV 319
L K +I P + +L YGPPGTGKTM+A+ +A +S + + + A +
Sbjct: 154 LKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGA 213
Query: 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSRD 376
+ E+F+ AK+ K ++FIDE DA +R I S E QR+ + L G D
Sbjct: 214 RIVRELFEMAKR-KAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLD 272
Query: 377 IV-LVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSD------- 426
V ++ ATNR LD A+ R D +IE PLP R ++ +YLKK D
Sbjct: 273 NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELL 332
Query: 427 ----EGDSSS------LKWGHL-FKKQQQKITIKDLSDNV 455
EG S + ++ ++ + + K+T+KDL D +
Sbjct: 333 SQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAI 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,084,790
Number of Sequences: 539616
Number of extensions: 7079829
Number of successful extensions: 52623
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 2376
Number of HSP's that attempted gapping in prelim test: 41996
Number of HSP's gapped (non-prelim): 8653
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)