Query 009856
Match_columns 523
No_of_seqs 536 out of 2812
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 18:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 100.0 1.8E-93 3.9E-98 700.7 48.4 509 3-517 117-626 (630)
2 PF12037 DUF3523: Domain of un 100.0 6.4E-42 1.4E-46 327.3 24.9 204 3-206 73-276 (276)
3 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-36 2.6E-41 297.6 21.0 239 239-504 144-394 (406)
4 COG1223 Predicted ATPase (AAA+ 100.0 1.6E-34 3.4E-39 270.6 18.6 237 239-502 114-355 (368)
5 KOG0730 AAA+-type ATPase [Post 100.0 8.2E-34 1.8E-38 296.3 21.1 239 239-505 427-677 (693)
6 KOG0734 AAA+-type ATPase conta 100.0 5.4E-34 1.2E-38 289.3 18.1 245 242-514 300-553 (752)
7 KOG0738 AAA+-type ATPase [Post 100.0 8.9E-32 1.9E-36 264.8 20.1 242 239-507 205-474 (491)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-31 3.7E-36 275.1 19.6 242 239-506 504-773 (802)
9 CHL00195 ycf46 Ycf46; Provisio 100.0 6.6E-31 1.4E-35 278.0 24.5 244 237-506 219-467 (489)
10 PTZ00454 26S protease regulato 100.0 1.3E-30 2.7E-35 270.4 25.6 247 239-512 138-396 (398)
11 KOG0731 AAA+-type ATPase conta 100.0 5.5E-31 1.2E-35 283.2 21.9 244 240-509 305-560 (774)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-30 2.2E-35 269.4 19.6 214 242-483 186-412 (802)
13 PRK03992 proteasome-activating 100.0 6.7E-29 1.5E-33 258.6 23.9 244 239-509 124-379 (389)
14 TIGR01241 FtsH_fam ATP-depende 100.0 6.9E-29 1.5E-33 267.0 23.6 238 240-504 49-297 (495)
15 KOG0728 26S proteasome regulat 100.0 9.8E-29 2.1E-33 230.5 19.5 237 241-504 142-390 (404)
16 KOG0727 26S proteasome regulat 100.0 3.1E-28 6.8E-33 227.4 22.4 239 239-504 148-398 (408)
17 CHL00176 ftsH cell division pr 100.0 2.2E-28 4.8E-33 266.5 24.6 239 240-505 177-426 (638)
18 KOG0739 AAA+-type ATPase [Post 100.0 1.8E-29 3.9E-34 240.7 12.7 211 238-475 125-343 (439)
19 PTZ00361 26 proteosome regulat 100.0 6.9E-28 1.5E-32 251.5 22.9 239 239-504 176-426 (438)
20 TIGR01243 CDC48 AAA family ATP 100.0 7.8E-28 1.7E-32 270.2 23.6 241 240-507 447-715 (733)
21 COG0464 SpoVK ATPases of the A 100.0 1.5E-27 3.2E-32 257.3 23.2 242 238-505 234-486 (494)
22 KOG0736 Peroxisome assembly fa 100.0 8.2E-28 1.8E-32 253.7 18.0 245 236-507 662-937 (953)
23 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-27 3.3E-32 235.2 18.7 210 239-476 85-305 (386)
24 COG0465 HflB ATP-dependent Zn 100.0 1E-27 2.2E-32 254.2 18.4 245 240-511 144-399 (596)
25 TIGR01242 26Sp45 26S proteasom 99.9 1.1E-26 2.3E-31 240.9 22.8 237 239-502 115-363 (364)
26 KOG0652 26S proteasome regulat 99.9 8.4E-27 1.8E-31 218.8 17.6 239 239-504 164-414 (424)
27 KOG0729 26S proteasome regulat 99.9 5.4E-27 1.2E-31 220.7 15.4 240 239-505 170-421 (435)
28 KOG0735 AAA+-type ATPase [Post 99.9 1.4E-26 3E-31 242.4 17.7 212 243-482 664-885 (952)
29 PRK10733 hflB ATP-dependent me 99.9 5.8E-26 1.3E-30 250.1 22.2 238 241-505 147-395 (644)
30 KOG0726 26S proteasome regulat 99.9 4.6E-27 1E-31 223.6 10.7 239 239-504 178-428 (440)
31 CHL00206 ycf2 Ycf2; Provisiona 99.9 5.5E-26 1.2E-30 259.9 21.2 208 272-510 1627-1885(2281)
32 TIGR03689 pup_AAA proteasome A 99.9 3.6E-25 7.9E-30 234.0 24.5 252 239-506 175-482 (512)
33 COG2204 AtoC Response regulato 99.9 1.3E-25 2.7E-30 232.7 12.7 307 123-496 48-385 (464)
34 PLN00020 ribulose bisphosphate 99.9 9.8E-24 2.1E-28 210.4 23.4 194 242-465 111-330 (413)
35 KOG0740 AAA+-type ATPase [Post 99.9 4.8E-24 1E-28 217.8 16.8 240 240-506 147-408 (428)
36 KOG0730 AAA+-type ATPase [Post 99.9 4.3E-23 9.2E-28 216.3 19.6 233 246-511 184-425 (693)
37 TIGR01243 CDC48 AAA family ATP 99.9 8.9E-23 1.9E-27 229.4 22.7 241 240-508 172-441 (733)
38 KOG0651 26S proteasome regulat 99.9 2.1E-23 4.5E-28 200.7 12.0 235 242-503 128-374 (388)
39 KOG0741 AAA+-type ATPase [Post 99.9 1E-23 2.2E-28 214.7 9.9 212 273-506 254-494 (744)
40 PF05496 RuvB_N: Holliday junc 99.9 6.1E-22 1.3E-26 185.9 18.8 191 241-477 19-224 (233)
41 COG0542 clpA ATP-binding subun 99.9 1.8E-21 3.8E-26 211.7 23.6 235 163-476 455-748 (786)
42 COG2256 MGS1 ATPase related to 99.9 1.5E-21 3.2E-26 194.9 19.5 217 241-505 19-241 (436)
43 COG2255 RuvB Holliday junction 99.9 7.9E-21 1.7E-25 181.5 20.8 216 241-502 21-251 (332)
44 CHL00181 cbbX CbbX; Provisiona 99.9 8.8E-21 1.9E-25 189.4 20.7 172 246-424 23-214 (287)
45 PRK00080 ruvB Holliday junctio 99.9 3.4E-20 7.3E-25 189.7 24.7 215 242-502 21-250 (328)
46 TIGR02881 spore_V_K stage V sp 99.9 1.2E-20 2.6E-25 186.8 19.8 171 245-423 5-195 (261)
47 TIGR00635 ruvB Holliday juncti 99.9 5.1E-20 1.1E-24 186.6 24.0 212 244-501 2-228 (305)
48 KOG0732 AAA+-type ATPase conta 99.9 1.1E-20 2.3E-25 209.0 20.4 214 239-479 258-486 (1080)
49 PRK14956 DNA polymerase III su 99.9 3.9E-20 8.4E-25 193.2 22.6 210 240-499 12-243 (484)
50 PRK14962 DNA polymerase III su 99.9 5.6E-20 1.2E-24 194.8 23.2 208 240-502 8-242 (472)
51 PRK10865 protein disaggregatio 99.8 1.8E-18 3.8E-23 196.2 34.4 207 245-476 567-822 (857)
52 TIGR02880 cbbX_cfxQ probable R 99.8 4.6E-20 1E-24 184.3 18.8 170 247-423 23-212 (284)
53 PRK12323 DNA polymerase III su 99.8 1.2E-19 2.6E-24 193.8 20.4 204 239-497 9-244 (700)
54 KOG0744 AAA+-type ATPase [Post 99.8 1.1E-19 2.3E-24 176.0 17.9 252 243-506 139-418 (423)
55 PRK07003 DNA polymerase III su 99.8 2.1E-19 4.6E-24 194.1 21.1 204 239-498 9-240 (830)
56 KOG0989 Replication factor C, 99.8 1.2E-19 2.6E-24 175.2 17.0 195 240-484 30-237 (346)
57 PRK14960 DNA polymerase III su 99.8 3.7E-19 8E-24 190.5 22.0 206 240-500 9-241 (702)
58 PRK14958 DNA polymerase III su 99.8 3.1E-19 6.6E-24 191.1 21.5 212 239-502 9-244 (509)
59 PRK14961 DNA polymerase III su 99.8 6.7E-19 1.5E-23 182.3 22.2 211 240-500 10-242 (363)
60 KOG0735 AAA+-type ATPase [Post 99.8 6.3E-19 1.4E-23 185.4 21.4 243 246-520 408-666 (952)
61 PRK07994 DNA polymerase III su 99.8 8E-19 1.7E-23 190.5 22.6 209 240-500 10-242 (647)
62 PRK14964 DNA polymerase III su 99.8 7.3E-19 1.6E-23 185.7 21.6 206 239-499 6-238 (491)
63 PRK14949 DNA polymerase III su 99.8 9.5E-19 2.1E-23 192.4 22.9 191 240-476 10-222 (944)
64 PLN03025 replication factor C 99.8 6.7E-19 1.5E-23 179.4 20.4 206 240-499 7-220 (319)
65 TIGR00763 lon ATP-dependent pr 99.8 2.8E-18 6E-23 193.6 27.0 230 246-500 320-584 (775)
66 PRK14963 DNA polymerase III su 99.8 1.4E-18 3.1E-23 185.6 22.3 210 240-502 8-240 (504)
67 PF00004 AAA: ATPase family as 99.8 3E-19 6.4E-24 157.4 14.1 127 278-405 1-132 (132)
68 PRK04195 replication factor C 99.8 1.5E-18 3.2E-23 186.3 22.0 209 240-499 8-222 (482)
69 PRK14957 DNA polymerase III su 99.8 2.2E-18 4.7E-23 184.5 23.0 210 240-501 10-243 (546)
70 PRK06645 DNA polymerase III su 99.8 2.2E-18 4.8E-23 183.4 22.5 217 239-503 14-257 (507)
71 COG3829 RocR Transcriptional r 99.8 2.5E-19 5.5E-24 185.5 14.1 221 239-496 238-491 (560)
72 PRK14959 DNA polymerase III su 99.8 2.1E-18 4.7E-23 185.6 21.7 208 240-499 10-241 (624)
73 TIGR03346 chaperone_ClpB ATP-d 99.8 4.1E-17 8.8E-22 185.8 33.4 206 246-476 565-819 (852)
74 PRK14951 DNA polymerase III su 99.8 2.4E-18 5.2E-23 186.4 22.0 206 240-500 10-247 (618)
75 TIGR03345 VI_ClpV1 type VI sec 99.8 2.1E-17 4.5E-22 187.0 30.4 202 246-476 566-824 (852)
76 PRK14952 DNA polymerase III su 99.8 3.6E-18 7.7E-23 184.5 22.5 210 240-500 7-242 (584)
77 PRK08691 DNA polymerase III su 99.8 2.7E-18 5.9E-23 185.5 20.9 214 239-502 9-244 (709)
78 PRK13342 recombination factor 99.8 5.5E-18 1.2E-22 178.6 22.8 205 241-502 7-219 (413)
79 PHA02544 44 clamp loader, smal 99.8 9.4E-18 2E-22 170.9 22.7 213 240-499 15-228 (316)
80 PRK05896 DNA polymerase III su 99.8 5.4E-18 1.2E-22 181.6 21.6 205 240-499 10-241 (605)
81 PRK05563 DNA polymerase III su 99.8 6E-18 1.3E-22 183.5 22.3 205 240-499 10-241 (559)
82 PRK14969 DNA polymerase III su 99.8 3.9E-18 8.5E-23 183.7 20.5 211 240-500 10-242 (527)
83 PRK07764 DNA polymerase III su 99.8 7.8E-18 1.7E-22 188.3 23.0 209 240-499 9-243 (824)
84 COG0466 Lon ATP-dependent Lon 99.8 1.5E-16 3.1E-21 169.1 29.7 230 246-500 323-582 (782)
85 PRK14965 DNA polymerase III su 99.8 8.3E-18 1.8E-22 183.2 20.9 203 240-498 10-240 (576)
86 PRK14953 DNA polymerase III su 99.8 1.6E-17 3.4E-22 177.0 22.0 209 240-500 10-242 (486)
87 PRK06305 DNA polymerase III su 99.8 3.1E-17 6.7E-22 173.7 23.3 208 240-499 11-243 (451)
88 PRK08451 DNA polymerase III su 99.8 2.3E-17 5E-22 175.8 22.2 205 240-499 8-239 (535)
89 PRK14970 DNA polymerase III su 99.8 3.2E-17 7E-22 170.4 22.9 211 240-500 11-231 (367)
90 PRK12402 replication factor C 99.8 2.2E-17 4.8E-22 169.5 21.5 209 241-501 10-248 (337)
91 PRK07133 DNA polymerase III su 99.8 2E-17 4.4E-22 180.5 21.7 210 240-499 12-240 (725)
92 TIGR02902 spore_lonB ATP-depen 99.8 1.6E-17 3.4E-22 179.5 20.7 217 240-501 59-331 (531)
93 PRK06893 DNA replication initi 99.8 3.6E-17 7.9E-22 158.7 21.1 210 240-500 10-228 (229)
94 TIGR02397 dnaX_nterm DNA polym 99.8 2.6E-17 5.6E-22 170.4 21.3 206 240-500 8-240 (355)
95 PRK11034 clpA ATP-dependent Cl 99.8 1.4E-17 2.9E-22 185.2 20.4 206 246-476 458-709 (758)
96 COG3604 FhlA Transcriptional r 99.8 2.6E-18 5.7E-23 175.7 13.0 219 239-495 216-465 (550)
97 PRK09111 DNA polymerase III su 99.8 4.3E-17 9.4E-22 177.0 22.3 212 240-501 18-256 (598)
98 PTZ00112 origin recognition co 99.8 1.1E-16 2.4E-21 173.7 24.7 226 240-503 749-1007(1164)
99 PRK13341 recombination factor 99.8 4E-17 8.7E-22 180.6 21.5 214 241-502 23-247 (725)
100 TIGR02639 ClpA ATP-dependent C 99.8 2.1E-17 4.5E-22 185.7 19.5 202 246-476 454-705 (731)
101 KOG2028 ATPase related to the 99.8 2.3E-17 4.9E-22 162.1 17.0 220 240-501 132-367 (554)
102 KOG0743 AAA+-type ATPase [Post 99.8 2.3E-17 4.9E-22 167.7 17.6 173 241-421 196-385 (457)
103 PRK06647 DNA polymerase III su 99.8 6.9E-17 1.5E-21 174.7 22.4 206 239-499 9-241 (563)
104 PRK14955 DNA polymerase III su 99.8 5.1E-17 1.1E-21 170.2 20.8 211 240-499 10-254 (397)
105 TIGR02639 ClpA ATP-dependent C 99.8 5.6E-17 1.2E-21 182.2 22.5 226 242-503 178-430 (731)
106 PRK08084 DNA replication initi 99.8 1.3E-16 2.8E-21 155.5 21.7 210 240-500 16-234 (235)
107 COG2812 DnaX DNA polymerase II 99.8 2.4E-17 5.1E-22 173.7 17.6 211 239-499 9-241 (515)
108 PRK00149 dnaA chromosomal repl 99.7 6.4E-17 1.4E-21 172.4 19.6 226 238-504 114-351 (450)
109 TIGR02974 phageshock_pspF psp 99.7 4.1E-17 8.9E-22 166.3 16.9 210 248-494 1-242 (329)
110 CHL00095 clpC Clp protease ATP 99.7 2.1E-16 4.6E-21 179.5 24.3 202 246-476 509-775 (821)
111 PRK14954 DNA polymerase III su 99.7 1.9E-16 4.2E-21 172.2 23.0 211 240-499 10-254 (620)
112 PRK00440 rfc replication facto 99.7 1.5E-16 3.3E-21 162.0 20.2 208 241-504 12-228 (319)
113 PRK10787 DNA-binding ATP-depen 99.7 5.8E-16 1.3E-20 173.5 26.1 230 246-501 322-581 (784)
114 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.2E-16 4.8E-21 152.8 19.9 205 241-499 10-225 (226)
115 PRK08903 DnaA regulatory inact 99.7 3.6E-16 7.7E-21 151.7 21.1 203 240-500 12-224 (227)
116 TIGR00362 DnaA chromosomal rep 99.7 1.6E-16 3.4E-21 167.3 20.0 225 238-504 102-339 (405)
117 KOG0736 Peroxisome assembly fa 99.7 2E-16 4.3E-21 168.2 20.5 204 276-507 432-658 (953)
118 PRK12422 chromosomal replicati 99.7 3.7E-16 8E-21 165.0 22.0 226 239-504 104-345 (445)
119 KOG2004 Mitochondrial ATP-depe 99.7 3.6E-15 7.8E-20 157.6 28.9 171 246-422 411-599 (906)
120 PRK14948 DNA polymerase III su 99.7 4.4E-16 9.6E-21 170.2 22.7 208 240-498 10-241 (620)
121 PRK07940 DNA polymerase III su 99.7 2.2E-16 4.7E-21 163.9 18.9 161 243-416 2-186 (394)
122 PRK14086 dnaA chromosomal repl 99.7 4.6E-16 9.9E-21 166.9 21.6 226 238-504 280-517 (617)
123 PRK14950 DNA polymerase III su 99.7 4.6E-16 1E-20 170.4 22.0 209 240-500 10-243 (585)
124 TIGR02928 orc1/cdc6 family rep 99.7 2.2E-15 4.7E-20 156.6 24.8 224 240-503 9-275 (365)
125 PRK00411 cdc6 cell division co 99.7 1.8E-15 3.9E-20 158.9 24.3 228 242-505 26-285 (394)
126 PRK11034 clpA ATP-dependent Cl 99.7 5.9E-16 1.3E-20 172.2 21.5 226 242-503 182-434 (758)
127 PRK06620 hypothetical protein; 99.7 9.4E-16 2E-20 146.9 19.5 200 239-499 9-213 (214)
128 PRK14971 DNA polymerase III su 99.7 1E-15 2.3E-20 167.4 22.1 204 240-499 11-243 (614)
129 PRK11608 pspF phage shock prot 99.7 3.3E-16 7.2E-21 159.7 16.6 214 244-494 4-249 (326)
130 PRK14088 dnaA chromosomal repl 99.7 9E-16 1.9E-20 162.4 20.1 225 238-504 97-334 (440)
131 PRK08727 hypothetical protein; 99.7 2.7E-15 5.7E-20 146.0 21.5 206 240-501 13-230 (233)
132 TIGR03345 VI_ClpV1 type VI sec 99.7 2.4E-15 5.3E-20 170.3 24.3 191 242-468 183-391 (852)
133 PRK14087 dnaA chromosomal repl 99.7 2E-15 4.4E-20 159.9 22.0 225 242-502 111-348 (450)
134 TIGR01817 nifA Nif-specific re 99.7 1.9E-16 4E-21 172.5 14.2 218 241-496 191-439 (534)
135 PF00308 Bac_DnaA: Bacterial d 99.7 1.3E-15 2.8E-20 146.6 17.6 201 240-481 2-215 (219)
136 PRK05642 DNA replication initi 99.7 4.4E-15 9.6E-20 144.5 20.8 213 239-500 12-233 (234)
137 KOG0991 Replication factor C, 99.7 7.4E-16 1.6E-20 143.3 14.3 192 241-484 22-221 (333)
138 PRK10820 DNA-binding transcrip 99.7 6.5E-16 1.4E-20 167.0 16.1 215 240-495 198-447 (520)
139 PRK05201 hslU ATP-dependent pr 99.7 2.7E-15 5.9E-20 153.6 18.4 242 246-503 15-433 (443)
140 PRK05342 clpX ATP-dependent pr 99.7 5.4E-15 1.2E-19 154.3 20.6 234 247-496 72-399 (412)
141 TIGR00390 hslU ATP-dependent p 99.7 4.2E-15 9E-20 152.2 19.2 243 246-504 12-432 (441)
142 TIGR00382 clpX endopeptidase C 99.7 3E-15 6.6E-20 155.3 18.3 227 246-484 77-387 (413)
143 PRK05022 anaerobic nitric oxid 99.7 1.4E-15 3E-20 164.4 16.4 216 244-496 185-437 (509)
144 COG1221 PspF Transcriptional r 99.7 4.5E-16 9.7E-21 159.2 11.2 211 240-488 72-312 (403)
145 TIGR02915 PEP_resp_reg putativ 99.7 4.7E-16 1E-20 166.0 11.9 281 163-495 71-382 (445)
146 TIGR02329 propionate_PrpR prop 99.6 1.8E-15 3.9E-20 162.5 15.1 219 240-498 206-466 (526)
147 PRK10865 protein disaggregatio 99.6 3.3E-15 7.2E-20 169.7 18.1 167 242-423 174-358 (857)
148 TIGR02640 gas_vesic_GvpN gas v 99.6 2.7E-14 5.8E-19 141.4 22.3 202 251-504 4-259 (262)
149 COG1224 TIP49 DNA helicase TIP 99.6 5E-14 1.1E-18 138.7 23.1 133 335-506 292-436 (450)
150 TIGR02903 spore_lon_C ATP-depe 99.6 2.6E-13 5.7E-18 149.1 31.0 216 242-502 150-430 (615)
151 PF05673 DUF815: Protein of un 99.6 2.5E-14 5.4E-19 136.5 19.9 192 242-478 23-245 (249)
152 PRK15424 propionate catabolism 99.6 3.7E-15 8.1E-20 159.9 16.0 216 241-496 214-479 (538)
153 CHL00095 clpC Clp protease ATP 99.6 1.5E-14 3.2E-19 164.5 21.3 165 242-422 175-357 (821)
154 PRK15429 formate hydrogenlyase 99.6 4.6E-15 9.9E-20 166.1 16.9 210 242-492 372-616 (686)
155 COG0593 DnaA ATPase involved i 99.6 3.6E-14 7.9E-19 145.7 21.4 228 238-507 79-318 (408)
156 PRK10923 glnG nitrogen regulat 99.6 1.3E-15 2.7E-20 163.7 11.1 219 244-499 136-385 (469)
157 TIGR03346 chaperone_ClpB ATP-d 99.6 1.2E-14 2.7E-19 165.6 19.0 169 241-424 168-354 (852)
158 CHL00081 chlI Mg-protoporyphyr 99.6 6.2E-14 1.4E-18 142.5 22.0 252 238-507 9-327 (350)
159 PRK09087 hypothetical protein; 99.6 3.6E-14 7.9E-19 137.1 19.1 202 240-502 15-222 (226)
160 PRK11388 DNA-binding transcrip 99.6 1E-14 2.3E-19 162.2 17.1 216 242-499 321-568 (638)
161 COG1474 CDC6 Cdc6-related prot 99.6 1.1E-13 2.5E-18 142.3 22.7 224 246-506 17-269 (366)
162 PRK13407 bchI magnesium chelat 99.6 7.2E-14 1.6E-18 141.8 20.8 245 242-504 4-308 (334)
163 PRK09112 DNA polymerase III su 99.6 6.4E-14 1.4E-18 143.6 20.4 187 241-475 18-241 (351)
164 PRK11361 acetoacetate metaboli 99.6 4.5E-15 9.8E-20 158.9 10.3 219 244-499 141-390 (457)
165 PRK05564 DNA polymerase III su 99.6 1E-13 2.2E-18 141.0 19.7 153 244-419 2-165 (313)
166 PRK07471 DNA polymerase III su 99.6 1.3E-13 2.8E-18 142.1 19.2 159 241-419 14-213 (365)
167 PRK15115 response regulator Gl 99.6 2.4E-14 5.3E-19 152.7 14.1 216 247-499 135-381 (444)
168 TIGR02030 BchI-ChlI magnesium 99.6 3.2E-13 7E-18 137.3 20.8 245 244-507 2-314 (337)
169 PRK07399 DNA polymerase III su 99.5 2.2E-13 4.7E-18 137.9 18.0 155 244-419 2-195 (314)
170 TIGR01818 ntrC nitrogen regula 99.5 4.4E-14 9.5E-19 151.5 12.5 219 245-499 133-381 (463)
171 KOG2035 Replication factor C, 99.5 1.2E-12 2.7E-17 125.0 20.6 210 241-503 8-259 (351)
172 TIGR00678 holB DNA polymerase 99.5 3E-13 6.4E-18 127.3 16.2 146 272-465 11-183 (188)
173 TIGR02442 Cob-chelat-sub cobal 99.5 8.5E-13 1.8E-17 145.9 22.2 242 244-508 2-310 (633)
174 COG3283 TyrR Transcriptional r 99.5 1.7E-13 3.7E-18 134.9 14.3 214 240-494 198-441 (511)
175 PRK13531 regulatory ATPase Rav 99.5 1.2E-12 2.5E-17 137.0 21.1 241 246-508 20-289 (498)
176 TIGR03015 pepcterm_ATPase puta 99.5 7.7E-12 1.7E-16 124.3 25.3 195 277-502 45-266 (269)
177 PRK04132 replication factor C 99.5 4E-13 8.6E-18 149.8 17.7 176 274-498 563-750 (846)
178 COG0470 HolB ATPase involved i 99.5 5.7E-13 1.2E-17 135.9 17.3 148 247-413 2-175 (325)
179 PRK05707 DNA polymerase III su 99.5 9.4E-13 2E-17 133.9 18.0 134 272-418 19-177 (328)
180 PF06068 TIP49: TIP49 C-termin 99.5 1.2E-12 2.7E-17 131.1 18.4 71 238-311 16-88 (398)
181 TIGR01650 PD_CobS cobaltochela 99.5 4.3E-13 9.3E-18 134.4 15.1 133 276-419 65-233 (327)
182 PHA02244 ATPase-like protein 99.5 1.9E-12 4.1E-17 131.0 19.8 122 277-410 121-265 (383)
183 PRK08058 DNA polymerase III su 99.5 1.3E-12 2.8E-17 133.6 17.8 153 244-416 3-179 (329)
184 KOG1942 DNA helicase, TBP-inte 99.5 7.3E-12 1.6E-16 120.4 21.5 133 335-506 297-442 (456)
185 PF05621 TniB: Bacterial TniB 99.5 5.4E-12 1.2E-16 124.3 21.0 221 246-497 34-284 (302)
186 cd00009 AAA The AAA+ (ATPases 99.5 2.2E-12 4.7E-17 114.6 15.8 123 274-405 18-151 (151)
187 smart00350 MCM minichromosome 99.5 4.2E-12 9.1E-17 137.1 20.4 250 246-504 203-506 (509)
188 TIGR00602 rad24 checkpoint pro 99.4 4.4E-12 9.6E-17 138.2 19.5 209 240-484 78-330 (637)
189 PRK10365 transcriptional regul 99.4 5.3E-13 1.2E-17 142.2 12.2 216 247-499 140-386 (441)
190 COG0714 MoxR-like ATPases [Gen 99.4 4.4E-12 9.6E-17 129.9 18.4 241 246-506 24-300 (329)
191 COG2607 Predicted ATPase (AAA+ 99.4 8.7E-12 1.9E-16 117.1 18.5 191 241-476 55-275 (287)
192 KOG1969 DNA replication checkp 99.4 8E-12 1.7E-16 133.0 19.4 205 240-485 265-518 (877)
193 KOG2680 DNA helicase TIP49, TB 99.4 2.9E-11 6.4E-16 116.6 20.3 134 335-507 289-434 (454)
194 PF13177 DNA_pol3_delta2: DNA 99.4 3.9E-12 8.5E-17 116.6 13.1 138 250-407 1-162 (162)
195 PF00158 Sigma54_activat: Sigm 99.4 2E-12 4.4E-17 119.1 11.0 131 248-397 1-162 (168)
196 KOG1051 Chaperone HSP104 and r 99.4 3.4E-12 7.4E-17 141.5 14.5 164 246-422 562-787 (898)
197 TIGR02031 BchD-ChlD magnesium 99.4 2E-11 4.3E-16 133.6 20.4 222 275-507 16-263 (589)
198 PF07724 AAA_2: AAA domain (Cd 99.4 5.5E-13 1.2E-17 123.2 6.7 111 274-386 2-130 (171)
199 PRK07993 DNA polymerase III su 99.4 2.8E-11 6.1E-16 123.4 18.5 133 272-417 21-178 (334)
200 PRK06871 DNA polymerase III su 99.4 4E-11 8.6E-16 121.3 19.3 134 272-418 21-178 (325)
201 PRK08769 DNA polymerase III su 99.3 4.7E-11 1E-15 120.6 18.3 132 273-417 24-183 (319)
202 KOG0990 Replication factor C, 99.3 9.2E-12 2E-16 121.5 12.5 193 240-484 35-239 (360)
203 TIGR00764 lon_rel lon-related 99.3 2.3E-11 5.1E-16 133.3 17.1 141 335-504 218-393 (608)
204 TIGR00368 Mg chelatase-related 99.3 4.1E-11 9E-16 128.1 18.0 226 243-501 189-498 (499)
205 COG1220 HslU ATP-dependent pro 99.3 1E-10 2.2E-15 114.9 18.1 152 336-503 252-434 (444)
206 COG1219 ClpX ATP-dependent pro 99.3 4.6E-11 1E-15 116.4 15.3 218 246-479 61-364 (408)
207 PF01078 Mg_chelatase: Magnesi 99.3 1.1E-12 2.5E-17 122.8 3.5 145 244-409 1-205 (206)
208 PRK06964 DNA polymerase III su 99.3 3.4E-11 7.4E-16 122.6 14.0 132 273-417 19-202 (342)
209 KOG0745 Putative ATP-dependent 99.3 7.2E-11 1.6E-15 119.2 15.9 197 277-485 228-512 (564)
210 PF07728 AAA_5: AAA domain (dy 99.3 1.4E-12 3.1E-17 116.4 3.3 111 277-397 1-139 (139)
211 KOG1514 Origin recognition com 99.3 1.2E-10 2.5E-15 124.2 17.8 220 249-507 399-660 (767)
212 PRK06090 DNA polymerase III su 99.3 1E-10 2.3E-15 117.9 16.5 133 272-417 22-178 (319)
213 COG0606 Predicted ATPase with 99.3 1.5E-11 3.2E-16 126.7 9.1 229 242-502 175-485 (490)
214 PTZ00111 DNA replication licen 99.2 2.9E-10 6.2E-15 126.6 18.9 219 277-505 494-807 (915)
215 COG0464 SpoVK ATPases of the A 99.2 3.2E-10 7E-15 122.6 18.5 205 272-505 15-229 (494)
216 PRK08116 hypothetical protein; 99.2 1.3E-10 2.8E-15 115.3 13.7 164 240-417 79-258 (268)
217 COG3284 AcoR Transcriptional a 99.2 7.6E-11 1.6E-15 125.1 12.3 205 250-496 317-551 (606)
218 PRK09862 putative ATP-dependen 99.2 3.5E-10 7.5E-15 120.5 17.1 230 243-502 188-492 (506)
219 COG0542 clpA ATP-binding subun 99.2 2E-10 4.4E-15 126.0 15.2 168 242-424 166-351 (786)
220 PRK11331 5-methylcytosine-spec 99.2 2.8E-10 6E-15 118.4 14.0 139 245-405 174-357 (459)
221 smart00382 AAA ATPases associa 99.2 3.4E-10 7.4E-15 99.4 12.5 123 275-406 2-147 (148)
222 PF14532 Sigma54_activ_2: Sigm 99.2 6.5E-11 1.4E-15 105.6 7.4 126 249-405 1-137 (138)
223 COG1239 ChlI Mg-chelatase subu 99.1 1.8E-09 3.9E-14 110.0 16.8 247 242-513 13-333 (423)
224 PF07726 AAA_3: ATPase family 99.1 9.9E-12 2.1E-16 107.1 0.3 112 277-397 1-129 (131)
225 PRK12377 putative replication 99.1 5.9E-10 1.3E-14 108.8 12.6 152 241-407 69-236 (248)
226 PRK05818 DNA polymerase III su 99.1 4.7E-09 1E-13 101.9 17.5 120 273-406 5-147 (261)
227 PRK08699 DNA polymerase III su 99.1 8.6E-10 1.9E-14 112.2 12.8 132 273-417 19-183 (325)
228 KOG2227 Pre-initiation complex 99.1 3.3E-09 7.1E-14 108.6 16.8 200 245-482 149-376 (529)
229 PRK13765 ATP-dependent proteas 99.1 4.9E-09 1.1E-13 114.9 18.2 139 334-501 226-399 (637)
230 KOG0741 AAA+-type ATPase [Post 99.1 1.7E-09 3.8E-14 111.6 13.4 154 261-417 526-684 (744)
231 PRK05917 DNA polymerase III su 99.0 7.3E-09 1.6E-13 102.7 16.1 123 272-407 16-155 (290)
232 PF03215 Rad17: Rad17 cell cyc 99.0 1.3E-08 2.8E-13 109.3 19.1 210 241-483 14-269 (519)
233 PRK06835 DNA replication prote 99.0 2.4E-08 5.1E-13 101.6 19.9 121 276-408 184-319 (329)
234 PRK07952 DNA replication prote 99.0 4.3E-09 9.2E-14 102.6 12.3 152 241-407 67-235 (244)
235 PRK07276 DNA polymerase III su 99.0 3.2E-08 6.9E-13 98.5 18.4 129 272-416 21-172 (290)
236 COG3267 ExeA Type II secretory 99.0 1.1E-07 2.4E-12 91.0 20.0 185 278-496 54-267 (269)
237 PF01637 Arch_ATPase: Archaeal 98.9 5.4E-09 1.2E-13 100.8 11.5 168 275-473 20-233 (234)
238 PRK08181 transposase; Validate 98.9 3.5E-09 7.6E-14 104.7 10.0 121 276-409 107-245 (269)
239 COG1241 MCM2 Predicted ATPase 98.9 1.9E-08 4.2E-13 109.6 16.5 249 245-506 285-596 (682)
240 PRK13406 bchD magnesium chelat 98.9 1.2E-08 2.7E-13 110.9 14.6 205 275-509 25-257 (584)
241 PRK07132 DNA polymerase III su 98.9 4.9E-08 1.1E-12 97.9 17.8 129 272-417 15-160 (299)
242 KOG0480 DNA replication licens 98.9 7.4E-08 1.6E-12 101.8 17.2 247 244-506 343-647 (764)
243 smart00763 AAA_PrkA PrkA AAA d 98.9 4.9E-08 1.1E-12 99.2 15.5 63 244-308 48-118 (361)
244 KOG0478 DNA replication licens 98.9 9.5E-08 2.1E-12 101.8 18.0 218 277-505 464-727 (804)
245 PRK08939 primosomal protein Dn 98.9 1.1E-08 2.5E-13 103.1 10.9 131 242-386 123-261 (306)
246 PRK06526 transposase; Provisio 98.8 4.9E-09 1.1E-13 103.0 7.2 124 276-412 99-240 (254)
247 KOG2170 ATPase of the AAA+ sup 98.8 8.8E-08 1.9E-12 93.3 15.3 131 246-387 82-226 (344)
248 PF12775 AAA_7: P-loop contain 98.8 1.9E-08 4E-13 100.0 10.2 168 241-423 5-197 (272)
249 COG1484 DnaC DNA replication p 98.8 2E-08 4.4E-13 98.7 10.2 100 275-386 105-209 (254)
250 PF13173 AAA_14: AAA domain 98.8 2.2E-08 4.7E-13 88.1 9.1 117 277-410 4-126 (128)
251 COG4650 RtcR Sigma54-dependent 98.8 4.3E-08 9.4E-13 94.8 11.3 196 278-502 211-443 (531)
252 KOG1970 Checkpoint RAD17-RFC c 98.8 6.7E-07 1.5E-11 93.5 19.8 210 241-482 77-320 (634)
253 PF00493 MCM: MCM2/3/5 family 98.7 9.1E-09 2E-13 105.3 5.5 244 246-504 24-328 (331)
254 PF01695 IstB_IS21: IstB-like 98.7 2.9E-09 6.4E-14 99.1 1.5 110 275-397 47-171 (178)
255 PRK06921 hypothetical protein; 98.7 1.1E-07 2.5E-12 94.1 12.7 114 275-396 117-239 (266)
256 PF12774 AAA_6: Hydrolytic ATP 98.7 2.3E-07 5E-12 89.8 14.3 145 246-414 10-175 (231)
257 PF05729 NACHT: NACHT domain 98.6 4.2E-07 9.2E-12 82.7 11.5 140 277-421 2-165 (166)
258 COG5271 MDN1 AAA ATPase contai 98.6 4E-07 8.7E-12 103.9 12.9 157 245-419 864-1047(4600)
259 PRK09183 transposase/IS protei 98.6 1.8E-07 3.9E-12 92.4 8.7 99 276-386 103-206 (259)
260 PRK06581 DNA polymerase III su 98.5 4.9E-06 1.1E-10 79.5 17.1 135 274-421 14-163 (263)
261 PF13401 AAA_22: AAA domain; P 98.5 3.8E-07 8.3E-12 80.0 8.9 97 276-385 5-125 (131)
262 KOG0482 DNA replication licens 98.5 9.7E-07 2.1E-11 91.2 11.9 246 246-502 342-638 (721)
263 COG5271 MDN1 AAA ATPase contai 98.5 3.3E-07 7.2E-12 104.6 8.2 136 276-421 1544-1705(4600)
264 cd01120 RecA-like_NTPases RecA 98.5 2.3E-06 5E-11 77.4 12.5 107 278-386 2-137 (165)
265 KOG1968 Replication factor C, 98.5 5.4E-07 1.2E-11 101.4 9.6 165 278-482 360-536 (871)
266 PF00931 NB-ARC: NB-ARC domain 98.5 2.7E-06 5.8E-11 85.2 13.9 165 273-478 17-206 (287)
267 PF03969 AFG1_ATPase: AFG1-lik 98.3 1.8E-06 4E-11 89.0 9.0 102 271-386 58-168 (362)
268 PHA00729 NTP-binding motif con 98.3 1.1E-06 2.3E-11 84.1 6.5 25 276-300 18-42 (226)
269 KOG0481 DNA replication licens 98.3 2E-05 4.3E-10 81.8 15.8 248 246-506 331-643 (729)
270 PLN03210 Resistant to P. syrin 98.3 3.3E-05 7.1E-10 92.0 19.4 154 242-420 180-365 (1153)
271 COG1618 Predicted nucleotide k 98.3 1.2E-05 2.7E-10 71.7 11.8 24 276-299 6-29 (179)
272 KOG0477 DNA replication licens 98.3 1E-05 2.2E-10 85.7 13.1 225 277-507 484-762 (854)
273 TIGR02688 conserved hypothetic 98.2 4.9E-05 1.1E-09 78.7 17.3 49 456-504 386-435 (449)
274 PF00910 RNA_helicase: RNA hel 98.2 7.4E-06 1.6E-10 69.6 8.1 23 278-300 1-23 (107)
275 KOG2543 Origin recognition com 98.2 3.2E-05 7E-10 78.0 13.7 133 275-418 30-192 (438)
276 PF07693 KAP_NTPase: KAP famil 98.2 0.00019 4.2E-09 73.2 20.0 82 333-424 171-268 (325)
277 PF06309 Torsin: Torsin; Inte 98.2 1.6E-05 3.6E-10 68.6 10.0 53 246-299 25-77 (127)
278 PRK04841 transcriptional regul 98.2 9.2E-05 2E-09 86.2 19.7 179 245-475 13-226 (903)
279 KOG2228 Origin recognition com 98.1 3.3E-05 7.1E-10 76.7 12.3 162 246-419 24-219 (408)
280 PF13191 AAA_16: AAA ATPase do 98.1 6.1E-06 1.3E-10 76.7 6.8 58 248-310 2-62 (185)
281 PHA02774 E1; Provisional 98.1 2.4E-05 5.2E-10 83.8 11.8 108 275-406 434-555 (613)
282 PF12780 AAA_8: P-loop contain 98.1 0.00024 5.2E-09 70.4 18.1 167 246-423 8-214 (268)
283 PF05707 Zot: Zonular occluden 98.1 4.8E-06 1E-10 78.7 5.4 122 278-406 3-146 (193)
284 PF14516 AAA_35: AAA-like doma 98.0 0.00035 7.6E-09 71.7 18.8 168 275-478 31-243 (331)
285 TIGR01618 phage_P_loop phage n 98.0 2E-05 4.4E-10 75.5 8.5 21 276-296 13-33 (220)
286 PRK08118 topology modulation p 98.0 2.8E-05 6E-10 71.7 9.2 103 277-423 3-105 (167)
287 PHA02624 large T antigen; Prov 98.0 2.7E-05 5.9E-10 83.7 9.8 118 275-405 431-561 (647)
288 COG1373 Predicted ATPase (AAA+ 98.0 0.00027 5.9E-09 74.2 17.2 120 277-413 39-161 (398)
289 PF13207 AAA_17: AAA domain; P 98.0 6.5E-06 1.4E-10 71.2 3.9 30 278-307 2-31 (121)
290 cd01124 KaiC KaiC is a circadi 98.0 6.8E-05 1.5E-09 70.0 11.0 31 278-308 2-35 (187)
291 COG5245 DYN1 Dynein, heavy cha 98.0 7.7E-05 1.7E-09 85.6 12.8 200 275-485 1494-1719(3164)
292 KOG0479 DNA replication licens 97.9 0.00047 1E-08 72.9 16.8 248 246-503 301-643 (818)
293 PRK05800 cobU adenosylcobinami 97.9 0.00014 3.1E-09 67.1 11.3 103 277-385 3-125 (170)
294 KOG1051 Chaperone HSP104 and r 97.9 0.00014 3E-09 81.9 13.0 162 245-422 185-366 (898)
295 COG1485 Predicted ATPase [Gene 97.9 0.00021 4.6E-09 71.8 12.9 29 272-300 62-90 (367)
296 KOG3928 Mitochondrial ribosome 97.8 0.00065 1.4E-08 69.4 16.2 118 335-476 316-458 (461)
297 PF10236 DAP3: Mitochondrial r 97.8 0.0009 1.9E-08 67.9 17.2 129 322-473 142-308 (309)
298 PRK15455 PrkA family serine pr 97.8 3.4E-05 7.4E-10 82.6 6.9 65 242-308 72-137 (644)
299 PRK07261 topology modulation p 97.8 0.0001 2.2E-09 68.1 9.3 103 277-422 2-104 (171)
300 PRK00131 aroK shikimate kinase 97.8 2.6E-05 5.7E-10 71.7 4.6 32 274-305 3-34 (175)
301 PRK04296 thymidine kinase; Pro 97.8 0.00022 4.7E-09 67.2 10.8 31 277-307 4-37 (190)
302 PTZ00202 tuzin; Provisional 97.8 0.0032 6.9E-08 65.7 19.8 63 242-309 258-320 (550)
303 PRK14700 recombination factor 97.8 0.00039 8.4E-09 68.9 12.7 106 373-502 5-115 (300)
304 PF13604 AAA_30: AAA domain; P 97.7 3.5E-05 7.7E-10 72.9 5.0 31 277-307 20-53 (196)
305 cd00544 CobU Adenosylcobinamid 97.7 0.00041 9E-09 63.9 11.8 103 278-385 2-125 (169)
306 KOG2383 Predicted ATPase [Gene 97.7 0.00015 3.1E-09 73.8 9.3 28 272-299 111-138 (467)
307 KOG3347 Predicted nucleotide k 97.7 2.7E-05 6E-10 68.5 3.6 31 276-306 8-38 (176)
308 cd01128 rho_factor Transcripti 97.7 0.00049 1.1E-08 67.5 12.8 27 275-301 16-42 (249)
309 PRK08233 hypothetical protein; 97.7 0.00024 5.2E-09 65.9 9.9 30 277-306 5-35 (182)
310 PRK10536 hypothetical protein; 97.7 0.00035 7.7E-09 68.1 11.2 22 277-298 76-97 (262)
311 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00023 5.1E-09 68.2 10.0 108 276-390 30-158 (213)
312 PF03266 NTPase_1: NTPase; In 97.7 0.00011 2.4E-09 67.7 7.2 23 277-299 1-23 (168)
313 TIGR02237 recomb_radB DNA repa 97.7 0.00035 7.5E-09 66.6 10.9 36 275-310 12-50 (209)
314 PRK14722 flhF flagellar biosyn 97.7 0.00016 3.5E-09 74.7 8.7 25 275-299 137-161 (374)
315 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.00042 9.2E-09 62.9 10.4 115 277-403 4-152 (159)
316 PRK09376 rho transcription ter 97.6 0.00044 9.5E-09 71.3 11.4 108 276-383 170-317 (416)
317 PF04665 Pox_A32: Poxvirus A32 97.6 0.00073 1.6E-08 65.5 12.0 129 277-418 15-169 (241)
318 PRK12723 flagellar biosynthesi 97.6 0.00048 1E-08 71.8 11.5 25 275-299 174-198 (388)
319 PRK05973 replicative DNA helic 97.6 0.00061 1.3E-08 66.1 11.3 36 273-308 62-100 (237)
320 PRK13695 putative NTPase; Prov 97.6 0.0011 2.4E-08 61.3 12.6 23 277-299 2-24 (174)
321 PRK13947 shikimate kinase; Pro 97.6 7.1E-05 1.5E-09 68.9 4.3 31 277-307 3-33 (171)
322 PRK09361 radB DNA repair and r 97.6 0.00055 1.2E-08 66.1 10.7 35 275-309 23-60 (225)
323 PRK00625 shikimate kinase; Pro 97.6 7E-05 1.5E-09 69.4 4.2 31 277-307 2-32 (173)
324 PRK14528 adenylate kinase; Pro 97.5 0.00065 1.4E-08 63.7 10.6 30 277-306 3-32 (186)
325 cd00983 recA RecA is a bacter 97.5 0.0005 1.1E-08 69.7 10.3 75 275-349 55-148 (325)
326 PRK03839 putative kinase; Prov 97.5 7.2E-05 1.6E-09 69.6 4.0 30 277-306 2-31 (180)
327 cd03283 ABC_MutS-like MutS-lik 97.5 0.00054 1.2E-08 65.0 9.8 23 276-298 26-48 (199)
328 COG4088 Predicted nucleotide k 97.5 0.00046 1E-08 64.2 8.9 24 277-300 3-26 (261)
329 KOG1808 AAA ATPase containing 97.5 0.00019 4.2E-09 85.6 7.7 152 248-418 419-598 (1856)
330 PF05272 VirE: Virulence-assoc 97.5 0.00092 2E-08 63.3 10.8 102 277-405 54-169 (198)
331 cd00464 SK Shikimate kinase (S 97.5 0.00011 2.3E-09 66.3 4.2 30 277-306 1-30 (154)
332 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00089 1.9E-08 60.8 10.3 104 273-387 23-141 (157)
333 PF05970 PIF1: PIF1-like helic 97.5 0.00043 9.4E-09 72.0 9.3 44 252-300 4-47 (364)
334 PRK08533 flagellar accessory p 97.5 0.0018 3.8E-08 63.0 12.9 34 274-307 23-59 (230)
335 cd03216 ABC_Carb_Monos_I This 97.5 0.001 2.3E-08 60.9 10.8 104 273-387 24-143 (163)
336 cd02027 APSK Adenosine 5'-phos 97.5 0.00045 9.8E-09 62.3 8.2 31 278-308 2-35 (149)
337 TIGR02012 tigrfam_recA protein 97.5 0.00051 1.1E-08 69.6 9.4 76 274-349 54-148 (321)
338 COG2909 MalT ATP-dependent tra 97.5 0.0026 5.5E-08 70.6 15.3 119 245-385 18-169 (894)
339 PF13671 AAA_33: AAA domain; P 97.5 8E-05 1.7E-09 66.2 3.2 24 278-301 2-25 (143)
340 PRK13949 shikimate kinase; Pro 97.5 0.00011 2.3E-09 67.9 4.0 31 277-307 3-33 (169)
341 COG1102 Cmk Cytidylate kinase 97.5 0.0001 2.2E-09 66.0 3.6 28 278-305 3-30 (179)
342 PF00448 SRP54: SRP54-type pro 97.5 0.00089 1.9E-08 63.3 10.3 25 275-299 1-25 (196)
343 PRK11889 flhF flagellar biosyn 97.5 0.0012 2.5E-08 68.3 11.7 34 275-308 241-277 (436)
344 cd01121 Sms Sms (bacterial rad 97.5 0.00078 1.7E-08 70.0 10.6 75 274-349 81-173 (372)
345 PRK14532 adenylate kinase; Pro 97.5 0.00011 2.4E-09 68.9 4.0 29 277-305 2-30 (188)
346 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00011 2.4E-09 68.4 4.0 28 278-305 2-29 (183)
347 COG4619 ABC-type uncharacteriz 97.4 0.0011 2.4E-08 59.9 10.0 25 275-299 29-53 (223)
348 cd00046 DEXDc DEAD-like helica 97.4 0.00071 1.5E-08 58.7 8.6 23 277-299 2-24 (144)
349 PRK13948 shikimate kinase; Pro 97.4 0.00017 3.7E-09 67.3 4.7 35 273-307 8-42 (182)
350 PRK05986 cob(I)alamin adenolsy 97.4 0.0011 2.3E-08 62.0 9.8 117 276-404 23-173 (191)
351 CHL00195 ycf46 Ycf46; Provisio 97.4 0.016 3.4E-07 62.5 20.0 129 335-504 82-210 (489)
352 TIGR02858 spore_III_AA stage I 97.4 0.0007 1.5E-08 67.2 9.1 25 276-300 112-136 (270)
353 PF02562 PhoH: PhoH-like prote 97.4 0.00018 3.9E-09 68.1 4.7 23 277-299 21-43 (205)
354 PRK08154 anaerobic benzoate ca 97.4 0.00032 6.9E-09 71.3 6.8 55 252-306 110-164 (309)
355 cd03243 ABC_MutS_homologs The 97.4 0.001 2.2E-08 63.1 9.9 22 276-297 30-51 (202)
356 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00093 2E-08 59.9 9.1 101 273-387 24-128 (144)
357 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00064 1.4E-08 66.8 8.7 32 278-309 2-36 (249)
358 PRK06217 hypothetical protein; 97.4 0.00017 3.6E-09 67.5 4.2 31 277-307 3-33 (183)
359 PRK11823 DNA repair protein Ra 97.4 0.0013 2.7E-08 70.2 11.4 75 274-349 79-171 (446)
360 PRK14531 adenylate kinase; Pro 97.4 0.00018 4E-09 67.2 4.4 29 277-305 4-32 (183)
361 PRK08485 DNA polymerase III su 97.4 0.0032 6.9E-08 58.9 12.5 70 336-417 56-137 (206)
362 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0013 2.8E-08 61.2 9.9 103 274-386 24-132 (177)
363 cd02020 CMPK Cytidine monophos 97.4 0.00017 3.7E-09 64.3 3.9 30 278-307 2-31 (147)
364 cd00227 CPT Chloramphenicol (C 97.4 0.00016 3.5E-09 67.0 3.8 32 276-307 3-34 (175)
365 PF04548 AIG1: AIG1 family; I 97.4 0.002 4.4E-08 61.7 11.5 98 277-383 2-125 (212)
366 PRK14530 adenylate kinase; Pro 97.4 0.00018 3.9E-09 69.0 4.3 30 277-306 5-34 (215)
367 PF13479 AAA_24: AAA domain 97.3 0.00036 7.7E-09 67.0 6.2 67 276-346 4-80 (213)
368 PRK06067 flagellar accessory p 97.3 0.0013 2.9E-08 63.9 10.3 36 273-308 23-61 (234)
369 KOG0742 AAA+-type ATPase [Post 97.3 0.064 1.4E-06 55.1 22.1 73 46-122 151-228 (630)
370 PRK06762 hypothetical protein; 97.3 0.00023 5.1E-09 65.2 4.6 33 276-308 3-35 (166)
371 COG1936 Predicted nucleotide k 97.3 0.00016 3.5E-09 65.6 3.3 30 277-307 2-31 (180)
372 TIGR00767 rho transcription te 97.3 0.0016 3.4E-08 67.5 10.9 28 273-300 166-193 (415)
373 COG0703 AroK Shikimate kinase 97.3 0.00019 4.1E-09 65.7 3.7 32 276-307 3-34 (172)
374 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0018 3.9E-08 62.4 10.7 22 276-297 32-53 (222)
375 TIGR01128 holA DNA polymerase 97.3 0.01 2.3E-07 59.7 16.8 128 334-502 46-178 (302)
376 TIGR03499 FlhF flagellar biosy 97.3 0.00074 1.6E-08 67.6 8.3 35 275-309 194-233 (282)
377 PRK06547 hypothetical protein; 97.3 0.00024 5.2E-09 65.7 4.4 35 273-307 13-47 (172)
378 PRK14527 adenylate kinase; Pro 97.3 0.0022 4.7E-08 60.3 11.0 31 275-305 6-36 (191)
379 smart00534 MUTSac ATPase domai 97.3 0.0027 5.9E-08 59.4 11.5 20 278-297 2-21 (185)
380 cd01428 ADK Adenylate kinase ( 97.3 0.0002 4.4E-09 67.2 3.9 29 278-306 2-30 (194)
381 PRK12608 transcription termina 97.3 0.0023 4.9E-08 65.9 11.6 25 276-300 134-158 (380)
382 PRK07452 DNA polymerase III su 97.3 0.0097 2.1E-07 60.8 16.5 178 277-501 3-198 (326)
383 PRK05703 flhF flagellar biosyn 97.3 0.002 4.2E-08 68.3 11.5 35 275-309 221-260 (424)
384 COG0529 CysC Adenylylsulfate k 97.3 0.0011 2.4E-08 60.4 8.1 39 273-311 21-62 (197)
385 PRK14974 cell division protein 97.3 0.0039 8.4E-08 63.8 13.1 34 275-308 140-176 (336)
386 PF06745 KaiC: KaiC; InterPro 97.3 0.0017 3.8E-08 62.7 10.2 36 273-308 17-56 (226)
387 PF00519 PPV_E1_C: Papillomavi 97.3 0.0023 4.9E-08 65.4 11.1 34 273-306 260-293 (432)
388 PF01745 IPT: Isopentenyl tran 97.3 0.00073 1.6E-08 63.6 7.0 35 277-311 3-37 (233)
389 PRK06696 uridine kinase; Valid 97.3 0.00051 1.1E-08 66.4 6.3 37 275-311 22-61 (223)
390 cd02021 GntK Gluconate kinase 97.3 0.00023 5.1E-09 64.0 3.7 27 278-304 2-28 (150)
391 cd01853 Toc34_like Toc34-like 97.3 0.0036 7.7E-08 61.5 12.3 26 273-298 29-54 (249)
392 TIGR01313 therm_gnt_kin carboh 97.3 0.00022 4.7E-09 65.2 3.5 27 278-304 1-27 (163)
393 PF13245 AAA_19: Part of AAA d 97.3 0.00048 1E-08 54.6 4.9 22 278-299 13-35 (76)
394 cd03246 ABCC_Protease_Secretio 97.3 0.0031 6.7E-08 58.3 11.2 103 274-387 27-157 (173)
395 cd03247 ABCC_cytochrome_bd The 97.2 0.002 4.4E-08 59.8 9.9 27 273-299 26-52 (178)
396 PTZ00088 adenylate kinase 1; P 97.2 0.0003 6.4E-09 68.2 4.4 30 277-306 8-37 (229)
397 PLN02200 adenylate kinase fami 97.2 0.00034 7.3E-09 68.1 4.7 35 275-311 43-77 (234)
398 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0028 6E-08 60.1 10.8 21 276-296 29-49 (200)
399 cd01393 recA_like RecA is a b 97.2 0.0024 5.3E-08 61.5 10.7 36 275-310 19-63 (226)
400 smart00487 DEXDc DEAD-like hel 97.2 0.002 4.3E-08 59.5 9.7 24 276-299 25-49 (201)
401 cd03228 ABCC_MRP_Like The MRP 97.2 0.0031 6.7E-08 58.2 10.8 105 273-389 26-158 (171)
402 PRK03731 aroL shikimate kinase 97.2 0.00036 7.9E-09 64.2 4.4 30 277-306 4-33 (171)
403 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.003 6.5E-08 60.1 10.8 22 276-297 30-51 (204)
404 COG3854 SpoIIIAA ncharacterize 97.2 0.0018 4E-08 61.4 9.0 26 274-299 136-161 (308)
405 PF00437 T2SE: Type II/IV secr 97.2 0.00036 7.8E-09 69.4 4.6 98 241-345 99-208 (270)
406 PRK04040 adenylate kinase; Pro 97.2 0.00037 8.1E-09 65.4 4.5 26 275-300 2-27 (188)
407 PRK13946 shikimate kinase; Pro 97.2 0.00032 7E-09 65.6 4.0 32 276-307 11-42 (184)
408 cd02022 DPCK Dephospho-coenzym 97.2 0.0013 2.8E-08 61.2 8.1 27 278-305 2-28 (179)
409 TIGR00152 dephospho-CoA kinase 97.2 0.0012 2.5E-08 62.0 7.7 131 278-416 2-143 (188)
410 PRK00771 signal recognition pa 97.2 0.0028 6.1E-08 67.1 11.4 36 274-309 94-132 (437)
411 PF01926 MMR_HSR1: 50S ribosom 97.2 0.0022 4.7E-08 54.9 8.8 21 278-298 2-22 (116)
412 PF09848 DUF2075: Uncharacteri 97.2 0.0018 3.8E-08 67.1 9.8 23 277-299 3-25 (352)
413 PRK14730 coaE dephospho-CoA ki 97.2 0.0012 2.6E-08 62.4 7.8 49 277-327 3-55 (195)
414 COG0563 Adk Adenylate kinase a 97.2 0.00037 8E-09 64.8 4.2 28 277-304 2-29 (178)
415 PRK09354 recA recombinase A; P 97.2 0.0024 5.3E-08 65.3 10.4 74 275-348 60-152 (349)
416 cd01131 PilT Pilus retraction 97.2 0.00096 2.1E-08 63.2 7.0 24 277-300 3-26 (198)
417 PRK05057 aroK shikimate kinase 97.2 0.00041 8.9E-09 64.2 4.4 32 276-307 5-36 (172)
418 cd03214 ABC_Iron-Siderophores_ 97.2 0.004 8.6E-08 58.0 10.9 27 273-299 23-49 (180)
419 TIGR01360 aden_kin_iso1 adenyl 97.2 0.0004 8.6E-09 64.8 4.2 28 277-304 5-32 (188)
420 PF01583 APS_kinase: Adenylyls 97.2 0.001 2.2E-08 60.2 6.6 35 277-311 4-41 (156)
421 PRK05574 holA DNA polymerase I 97.2 0.039 8.4E-07 56.6 19.3 187 274-504 16-215 (340)
422 PRK02496 adk adenylate kinase; 97.2 0.0004 8.6E-09 64.9 4.1 30 277-306 3-32 (184)
423 cd02019 NK Nucleoside/nucleoti 97.1 0.00067 1.4E-08 52.6 4.6 29 278-306 2-31 (69)
424 COG2804 PulE Type II secretory 97.1 0.0027 5.8E-08 67.1 10.4 54 242-304 234-287 (500)
425 cd03227 ABC_Class2 ABC-type Cl 97.1 0.0019 4.1E-08 59.1 8.4 24 276-299 22-45 (162)
426 COG4178 ABC-type uncharacteriz 97.1 0.0015 3.3E-08 70.8 8.7 28 272-299 416-443 (604)
427 TIGR01351 adk adenylate kinase 97.1 0.0004 8.6E-09 66.4 3.9 29 278-306 2-30 (210)
428 TIGR00708 cobA cob(I)alamin ad 97.1 0.0051 1.1E-07 56.6 11.0 116 277-404 7-155 (173)
429 PRK13808 adenylate kinase; Pro 97.1 0.003 6.4E-08 64.3 10.3 30 277-306 2-31 (333)
430 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0024 5.1E-08 63.4 9.4 92 244-345 58-160 (264)
431 cd03238 ABC_UvrA The excision 97.1 0.0072 1.6E-07 56.1 12.0 25 273-297 19-43 (176)
432 PRK12724 flagellar biosynthesi 97.1 0.0082 1.8E-07 62.8 13.5 33 276-308 224-260 (432)
433 PF13238 AAA_18: AAA domain; P 97.1 0.00038 8.2E-09 60.3 3.3 22 278-299 1-22 (129)
434 PRK00081 coaE dephospho-CoA ki 97.1 0.0015 3.2E-08 61.7 7.5 27 277-304 4-30 (194)
435 PRK00279 adk adenylate kinase; 97.1 0.00047 1E-08 66.2 4.1 29 277-305 2-30 (215)
436 PRK03846 adenylylsulfate kinas 97.1 0.0044 9.5E-08 58.7 10.6 38 273-310 22-62 (198)
437 KOG0923 mRNA splicing factor A 97.1 0.064 1.4E-06 58.1 20.0 41 332-382 376-416 (902)
438 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0018 3.8E-08 64.1 8.2 36 273-308 34-72 (259)
439 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0049 1.1E-07 59.7 11.2 36 275-310 19-63 (235)
440 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0042 9E-08 58.6 10.2 27 273-299 33-59 (194)
441 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0047 1E-07 60.2 10.6 35 273-307 19-56 (237)
442 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0075 1.6E-07 55.4 11.4 27 273-299 25-51 (166)
443 PF10923 DUF2791: P-loop Domai 97.0 0.031 6.7E-07 58.6 17.1 47 248-299 27-73 (416)
444 PF08303 tRNA_lig_kinase: tRNA 97.0 0.015 3.2E-07 52.7 12.6 130 281-424 5-148 (168)
445 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0078 1.7E-07 58.0 11.7 35 274-308 15-52 (224)
446 PLN02674 adenylate kinase 97.0 0.0007 1.5E-08 66.0 4.3 32 274-305 30-61 (244)
447 cd01878 HflX HflX subfamily. 97.0 0.019 4.1E-07 54.2 14.1 25 274-298 40-64 (204)
448 PRK13764 ATPase; Provisional 97.0 0.0011 2.4E-08 72.4 6.3 25 276-300 258-282 (602)
449 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0066 1.4E-07 56.1 10.6 27 273-299 24-50 (173)
450 TIGR01420 pilT_fam pilus retra 97.0 0.0012 2.7E-08 68.0 6.3 25 276-300 123-147 (343)
451 cd01130 VirB11-like_ATPase Typ 97.0 0.0011 2.3E-08 62.2 5.3 25 276-300 26-50 (186)
452 PF01443 Viral_helicase1: Vira 97.0 0.00088 1.9E-08 64.8 4.9 22 278-299 1-22 (234)
453 COG1419 FlhF Flagellar GTP-bin 97.0 0.0084 1.8E-07 61.9 12.0 26 274-299 202-227 (407)
454 cd01122 GP4d_helicase GP4d_hel 97.0 0.0052 1.1E-07 61.1 10.4 36 273-308 28-67 (271)
455 PF05872 DUF853: Bacterial pro 97.0 0.0052 1.1E-07 64.0 10.4 72 336-414 257-330 (502)
456 PF00406 ADK: Adenylate kinase 96.9 0.00055 1.2E-08 61.7 3.0 26 280-305 1-26 (151)
457 PHA00012 I assembly protein 96.9 0.0036 7.7E-08 62.7 8.7 58 333-395 80-137 (361)
458 TIGR01069 mutS2 MutS2 family p 96.9 0.011 2.4E-07 67.1 14.0 23 276-298 323-345 (771)
459 PRK04182 cytidylate kinase; Pr 96.9 0.0008 1.7E-08 62.2 3.9 29 277-305 2-30 (180)
460 PHA00350 putative assembly pro 96.9 0.0014 3E-08 68.1 6.0 115 278-399 4-158 (399)
461 PRK13833 conjugal transfer pro 96.9 0.001 2.2E-08 67.5 4.9 68 276-344 145-225 (323)
462 cd03239 ABC_SMC_head The struc 96.9 0.018 4E-07 53.5 12.9 23 277-299 24-46 (178)
463 TIGR00991 3a0901s02IAP34 GTP-b 96.9 0.015 3.4E-07 58.4 13.1 44 252-298 18-61 (313)
464 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0015 3.3E-08 57.5 5.3 28 275-302 22-49 (133)
465 COG1855 ATPase (PilT family) [ 96.9 0.001 2.2E-08 68.6 4.7 45 242-299 243-287 (604)
466 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.9 0.004 8.6E-08 59.2 8.6 23 277-299 40-62 (205)
467 PF10662 PduV-EutP: Ethanolami 96.9 0.0044 9.5E-08 55.1 8.1 22 276-297 2-23 (143)
468 cd00984 DnaB_C DnaB helicase C 96.9 0.007 1.5E-07 58.9 10.5 36 273-308 11-50 (242)
469 TIGR01613 primase_Cterm phage/ 96.9 0.0037 8.1E-08 63.3 8.8 139 246-404 48-202 (304)
470 PRK01184 hypothetical protein; 96.9 0.00085 1.8E-08 62.6 3.8 29 277-306 3-31 (184)
471 cd01394 radB RadB. The archaea 96.9 0.0085 1.9E-07 57.4 10.8 35 275-309 19-56 (218)
472 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00091 2E-08 61.3 3.9 28 278-305 3-30 (171)
473 cd03232 ABC_PDR_domain2 The pl 96.9 0.016 3.4E-07 54.6 12.3 25 274-298 32-56 (192)
474 PF08433 KTI12: Chromatin asso 96.9 0.0049 1.1E-07 61.2 9.2 82 277-370 3-96 (270)
475 PF00488 MutS_V: MutS domain V 96.9 0.01 2.2E-07 57.8 11.2 101 276-387 44-167 (235)
476 TIGR01448 recD_rel helicase, p 96.9 0.0018 3.9E-08 73.1 6.9 23 277-299 340-362 (720)
477 PRK14526 adenylate kinase; Pro 96.9 0.001 2.3E-08 63.6 4.2 28 277-304 2-29 (211)
478 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0085 1.9E-07 57.6 10.5 22 276-297 31-52 (216)
479 PRK06585 holA DNA polymerase I 96.9 0.087 1.9E-06 54.3 18.8 178 276-504 21-212 (343)
480 PRK12727 flagellar biosynthesi 96.9 0.0051 1.1E-07 66.0 9.7 25 275-299 350-374 (559)
481 cd03229 ABC_Class3 This class 96.9 0.0097 2.1E-07 55.2 10.6 26 274-299 25-50 (178)
482 cd01852 AIG1 AIG1 (avrRpt2-ind 96.9 0.0072 1.6E-07 57.0 9.9 22 277-298 2-23 (196)
483 TIGR00455 apsK adenylylsulfate 96.8 0.0049 1.1E-07 57.5 8.6 39 273-311 16-57 (184)
484 TIGR02782 TrbB_P P-type conjug 96.8 0.0011 2.5E-08 66.8 4.5 68 276-344 133-214 (299)
485 PF13521 AAA_28: AAA domain; P 96.8 0.0008 1.7E-08 61.5 3.0 26 278-304 2-27 (163)
486 cd03286 ABC_MSH6_euk MutS6 hom 96.8 0.011 2.4E-07 56.8 10.9 24 275-298 30-53 (218)
487 PRK13541 cytochrome c biogenes 96.8 0.016 3.4E-07 54.6 11.8 27 273-299 24-50 (195)
488 PRK10263 DNA translocase FtsK; 96.8 0.016 3.4E-07 67.7 13.7 76 336-418 1142-1219(1355)
489 PRK13900 type IV secretion sys 96.8 0.0037 8.1E-08 64.0 8.0 68 276-344 161-245 (332)
490 PRK05541 adenylylsulfate kinas 96.8 0.0016 3.5E-08 60.2 4.9 27 274-300 6-32 (176)
491 cd03233 ABC_PDR_domain1 The pl 96.8 0.011 2.3E-07 56.2 10.7 28 273-300 31-58 (202)
492 PLN02459 probable adenylate ki 96.8 0.0011 2.3E-08 65.1 3.8 29 277-305 31-59 (261)
493 COG5192 BMS1 GTP-binding prote 96.8 0.0053 1.1E-07 64.8 9.0 71 272-343 66-144 (1077)
494 PF10443 RNA12: RNA12 protein; 96.8 0.13 2.8E-06 53.8 19.0 80 337-422 151-232 (431)
495 PRK04301 radA DNA repair and r 96.8 0.0094 2E-07 60.8 10.8 36 275-310 102-146 (317)
496 COG1136 SalX ABC-type antimicr 96.8 0.022 4.7E-07 54.7 12.4 24 276-299 32-55 (226)
497 TIGR00416 sms DNA repair prote 96.8 0.0058 1.3E-07 65.3 9.4 74 274-348 93-184 (454)
498 PF13086 AAA_11: AAA domain; P 96.8 0.001 2.2E-08 63.8 3.4 22 278-299 20-41 (236)
499 PRK13894 conjugal transfer ATP 96.8 0.0013 2.8E-08 66.9 4.2 68 276-344 149-229 (319)
500 COG1124 DppF ABC-type dipeptid 96.7 0.014 3.1E-07 56.1 10.8 26 274-299 32-57 (252)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-93 Score=700.69 Aligned_cols=509 Identities=67% Similarity=0.976 Sum_probs=482.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHhhh
Q 009856 3 RKFTMKQFNLKLMLQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRST 82 (523)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (523)
.+|++.++|++++++||.+||||||+++|+++++++++|+|+|+||||+.+++.|+++|++.+++||+++.+||..|+.|
T Consensus 117 ~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraT 196 (630)
T KOG0742|consen 117 KEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDKLARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRAT 196 (630)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhhhc
Q 009856 83 EEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLT 162 (523)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~~~~~~~~~~~ 162 (523)
++++++++++++.+++++++++.+.++.+|+++++...+-+.|++++++..+++++|++|+++|++.|.+++.+++++++
T Consensus 197 eE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~lt 276 (630)
T KOG0742|consen 197 EEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLT 276 (630)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCCCCcccccCCCCCCCchhhHHHHHHHHhhcCCCCCCCccccc
Q 009856 163 DRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAI 242 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~~~l~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (523)
|+++++..|+|+|++++|+|+++.|+.|+|.||+++||+|+|+||+|+..+||.+.++.....+.- .........
T Consensus 277 D~~Kli~tVgGlTaLAaGvYTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~-----~~~~s~~gk 351 (630)
T KOG0742|consen 277 DWNKLIATVGGLTALAAGVYTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG-----SRSASSRGK 351 (630)
T ss_pred hhHhHHHHhhhHHHHHhhheeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh-----hHhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999887765544311 112234567
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHH
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKI 322 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l 322 (523)
++|++||++|.+..+|.++.....|++.+..|+++||||||||||||++|+.||..+|.+|..++|+++.++|.+.+..+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTki 431 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKI 431 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEe
Q 009856 323 HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIE 402 (523)
Q Consensus 323 ~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~ 402 (523)
+.+|+|++.+++|.+|||||+|.|+.+|+...|++..+..||.||...++.+++++++++||.|.+||.++.+|||.+|+
T Consensus 432 H~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~ve 511 (630)
T KOG0742|consen 432 HKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVE 511 (630)
T ss_pred HHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 009856 403 FPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD-LSDNVIQEAARKTEGFSGREIAKLMASVQAA 481 (523)
Q Consensus 403 ~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a 481 (523)
||+|..++|..||..||++|........+...|..+|.....++.+.. .++..+...|..|+|||||+|.+|+..++++
T Consensus 512 FpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAa 591 (630)
T KOG0742|consen 512 FPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAA 591 (630)
T ss_pred cCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 999999999999999999998743333335688999999999998876 6778899999999999999999999999999
Q ss_pred HHcCCCCccCHHHHHHHHHHHHHhhhhcchhhccCC
Q 009856 482 VYARPDCVLDSQLFREVVEYKVEEHHQRIKLAAEGS 517 (523)
Q Consensus 482 ~~~~~~~~it~e~~~~~l~~~~~~~~~~~~~~~~~~ 517 (523)
+|++.+|+++...|++.+++.+.+|.+++ |+..++
T Consensus 592 vYgsedcvLd~~lf~e~v~ykv~eHqqr~-~La~e~ 626 (630)
T KOG0742|consen 592 VYGSEDCVLDEALFDERVDYKVQEHQQRM-WLAAEG 626 (630)
T ss_pred HhcccchhhHHHHHHHHHHHHHHHHHHHH-HHhhcc
Confidence 99999999999999999999999999999 655543
No 2
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=100.00 E-value=6.4e-42 Score=327.29 Aligned_cols=204 Identities=56% Similarity=0.732 Sum_probs=202.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHhhh
Q 009856 3 RKFTMKQFNLKLMLQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRST 82 (523)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (523)
.+|+++++|+++++.||++||+|||+++++++++++++|+|+|+|+||++++++++.+|++++++|++++.+||++|+.|
T Consensus 73 ~e~ea~~~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~T 152 (276)
T PF12037_consen 73 AEYEAAQAQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRAT 152 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhhhc
Q 009856 83 EEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLT 162 (523)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~~~~~~~~~~~ 162 (523)
+++|+++++++++++++|++++++.+..+|++++++.+|+|.|+++++++.++.++|.++|++|+++|.++|.++.+|++
T Consensus 153 e~~i~~~r~~t~~~eaeL~~e~~~~k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~llt 232 (276)
T PF12037_consen 153 EEQILAQRRQTEEEEAELRRETERAKAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFRALLT 232 (276)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCCCCccc
Q 009856 163 DRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIR 206 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~~~l~~ 206 (523)
|++++++.|++.|++++|||++|.|++|+++||+++||+|+|||
T Consensus 233 D~~kl~~~vgg~T~LA~GvYtar~gt~v~~~yie~rLGkPsLVR 276 (276)
T PF12037_consen 233 DRDKLTTTVGGLTALAAGVYTAREGTRVAGRYIEARLGKPSLVR 276 (276)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCccCC
Confidence 99999999999999999999999999999999999999999986
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=297.56 Aligned_cols=239 Identities=28% Similarity=0.415 Sum_probs=208.9
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hc----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-AN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..++++|-|.+...+.++..+..- .+ -..+..||++||||||||||||+||+|+|+..++.|+.+.|+.+..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 467889999999999888888876542 22 2345689999999999999999999999999999999999999875
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.|++..-++++|..|+... ||||||||||+++.+|.+. +.....++.+..||..++ +..+++-||++||+++.
T Consensus 224 KYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 224 KYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 77899999999999998766 7999999999999998754 334567888888888887 45679999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|||||++ |||..|+||+|+.+.|.+||+.+..+... ..+.+++.||..|+||
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--------------------------~~dvd~e~la~~~~g~ 356 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--------------------------ADDVDLELLARLTEGF 356 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--------------------------ccCcCHHHHHHhcCCC
Confidence 9999998 99999999999999999999999988755 3445799999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
||+||+.+|..+-..|+..+...+|++||.++++..+.
T Consensus 357 sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 357 SGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred chHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 99999999987777777778899999999999998865
No 4
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=270.58 Aligned_cols=237 Identities=29% Similarity=0.465 Sum_probs=204.2
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcC-CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc-cchh
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQ-APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGA 316 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~-~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~-~~~~ 316 (523)
..+..+|+++||++.++...+-+...+.++...+ ..|++||||||||||||++|+++|++.+.|++.+....+. ...+
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 4567789999999999999999999999987655 5678999999999999999999999999999999988765 4777
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcHHHh
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAIT 394 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~al~ 394 (523)
++...++.+++.|.... |||+||||+|+++-.|.-...-.+....+|.||..++ ....+++.|++||.|+.||++++
T Consensus 194 dgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 194 DGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hHHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 89999999999998776 7999999999998777655556677889999999887 45568999999999999999999
Q ss_pred ccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHH
Q 009856 395 DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 474 (523)
Q Consensus 395 ~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 474 (523)
|||...|+|.+|+.++|..|++.|++.++. .+ +..+..++..|.|||||||..=
T Consensus 273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-------------------------pv-~~~~~~~~~~t~g~SgRdikek 326 (368)
T COG1223 273 SRFEEEIEFKLPNDEERLEILEYYAKKFPL-------------------------PV-DADLRYLAAKTKGMSGRDIKEK 326 (368)
T ss_pred hhhhheeeeeCCChHHHHHHHHHHHHhCCC-------------------------cc-ccCHHHHHHHhCCCCchhHHHH
Confidence 999999999999999999999999998765 11 2248899999999999999875
Q ss_pred H-HHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 475 M-ASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 475 ~-~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
+ ..+..-++..+...++.+|+..+++..
T Consensus 327 vlK~aLh~Ai~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 327 VLKTALHRAIAEDREKVEREDIEKALKKE 355 (368)
T ss_pred HHHHHHHHHHHhchhhhhHHHHHHHHHhh
Confidence 5 444455555577899999999999863
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-34 Score=296.32 Aligned_cols=239 Identities=27% Similarity=0.425 Sum_probs=206.3
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc-----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~-----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..+..+|++|-|.++++..+++.+.+.-. .+.+..|+++||||||||||||++|+++|++++++|+.+.|+++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 45788999999999999999987764322 2344589999999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCc
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~ 390 (523)
+.+++...+..+|..|+... ||||||||+|++...|++. .+....++|+.+|..++ ...++++||++||+|+.||
T Consensus 507 k~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~-~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID 584 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGS-SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMID 584 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCC-ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcC
Confidence 88899999999999998776 5999999999999999843 34778899999999987 4567999999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
+++++ |||..|++|+|+.+.|.+||+.++++... -.+.++..||..|+||||
T Consensus 585 ~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~--------------------------~~~vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 585 PALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF--------------------------SEDVDLEELAQATEGYSG 638 (693)
T ss_pred HHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC--------------------------CccccHHHHHHHhccCCh
Confidence 99999 99999999999999999999999998765 223479999999999999
Q ss_pred HHHHHHHHHHHHHHHcC--CCCccCHHHHHHHHHHHHHh
Q 009856 469 REIAKLMASVQAAVYAR--PDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~--~~~~it~e~~~~~l~~~~~~ 505 (523)
+||..+|..+...++.. ....|+..||.++++...+.
T Consensus 639 Ael~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 639 AEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 99999997555555432 34578999999999887654
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-34 Score=289.33 Aligned_cols=245 Identities=25% Similarity=0.372 Sum_probs=210.0
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-chh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~~ 316 (523)
...|++|-|-++++..|..++..++++ ..++.-|++|||+||||||||+||+++|.+.|.||++..|+.+.. +.+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 556999999999999999999998875 456677899999999999999999999999999999999999887 566
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcHHHh
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAIT 394 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~al~ 394 (523)
.+...++++|..|+... ||||||||+|+++++|...... .....||++|-.++. .+.+++||++||.|+.||++|.
T Consensus 380 vGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred ccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 77889999999998766 7999999999999999876655 778899999999873 4568999999999999999999
Q ss_pred c--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHH
Q 009856 395 D--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 472 (523)
Q Consensus 395 ~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 472 (523)
+ |||.+|.+|.||..-|.+||.+|+.+... -.+.+...||.-|.||||+||.
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~--------------------------~~~VD~~iiARGT~GFsGAdLa 511 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL--------------------------DEDVDPKIIARGTPGFSGADLA 511 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCc--------------------------ccCCCHhHhccCCCCCchHHHH
Confidence 8 99999999999999999999999998755 1233567789999999999999
Q ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhcchhhc
Q 009856 473 KLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIKLAA 514 (523)
Q Consensus 473 ~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~~~~~~ 514 (523)
+|+|.+-..+...+...+|+.+++.+-+..+-...+|....+
T Consensus 512 NlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~ 553 (752)
T KOG0734|consen 512 NLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVID 553 (752)
T ss_pred HHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccC
Confidence 999843333333455689999999998888766666654443
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-32 Score=264.83 Aligned_cols=242 Identities=23% Similarity=0.359 Sum_probs=201.6
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hc---chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-AN---TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~---~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
..|...|++|.|..++++.|...+..- .. ......|+++||++||||||||+||+++|.++|..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 346788999999999999999876532 22 2333478999999999999999999999999999999999998875
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC---CCCC---EEEEEeeCCCC
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---QSRD---IVLVLATNRPG 387 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~---v~iI~ttn~~~ 387 (523)
+-++....++-+|+.|+.+. |++|||||||.|++.|++.+.++..+++-..||..++. ...+ |+|+++||.|+
T Consensus 285 wRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 88899999999999998877 68999999999999999888888889998888877652 2223 67778899999
Q ss_pred CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 388 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 388 ~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
+||.+|++||...|++|+|+.+.|..+++..+..... .++..++.|+..++|||
T Consensus 364 diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~--------------------------~~~~~~~~lae~~eGyS 417 (491)
T KOG0738|consen 364 DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL--------------------------DDPVNLEDLAERSEGYS 417 (491)
T ss_pred chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC--------------------------CCCccHHHHHHHhcCCC
Confidence 9999999999999999999999999999999887544 45557899999999999
Q ss_pred HHHHHHHHHHHHHHHHc-----------------CCCCccCHHHHHHHHHHHHHhhh
Q 009856 468 GREIAKLMASVQAAVYA-----------------RPDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~-----------------~~~~~it~e~~~~~l~~~~~~~~ 507 (523)
|.||..+|..+-..+.. .....++.+||+.++..+.|...
T Consensus 418 GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 418 GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 99999999633222211 11235899999999999877643
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-31 Score=275.14 Aligned_cols=242 Identities=25% Similarity=0.366 Sum_probs=201.2
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
.-|..+|++|-+..++...|...+.+- +.+ ..+..+|.+||||||||||||.+|+++|++.|.+|+.+.|+++..
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 358889999999999999998866543 222 233466789999999999999999999999999999999999875
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCc
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~ 390 (523)
+.|+....++.+|..|+.+. ||||||||+|+|.+.|+..+ +....+++|+||..++ ....+|.||++||+|+.+|
T Consensus 584 kYVGESErAVR~vFqRAR~sa-PCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASA-PCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCC-CeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 78899999999999998766 79999999999999999877 6677889999999987 4567899999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCC--CC
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GF 466 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~ 466 (523)
|++++ |||..+++++|+.++|..||+...+.... + -.++.+++.||..+. ||
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~---p---------------------l~~dVdl~eia~~~~c~gf 717 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKP---P---------------------LSSDVDLDEIARNTKCEGF 717 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCC---C---------------------CCcccCHHHHhhcccccCC
Confidence 99998 99999999999999999999999885211 1 134557999998765 99
Q ss_pred CHHHHHHHHHHHHHHHH-----cCC-----------CCccCHHHHHHHHHHHHHhh
Q 009856 467 SGREIAKLMASVQAAVY-----ARP-----------DCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~-----~~~-----------~~~it~e~~~~~l~~~~~~~ 506 (523)
||+||..||..+-..++ ... ..++|..+|.+++....|.-
T Consensus 718 tGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 718 TGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 99999999963333332 111 22578889999999887764
No 9
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=6.6e-31 Score=278.02 Aligned_cols=244 Identities=19% Similarity=0.231 Sum_probs=202.2
Q ss_pred CcccccccCCCcccCHHHHHHHHHHHHHHhc--chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 237 GPVEAIKNNGDIILHPSLQRRIQHLAKATAN--TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 237 ~~~~~~~~~~~vig~~~~~~~l~~~~~~~~~--~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
....+..+|++|.|.+.+++.+......+.. ...+..+++++|||||||||||++|+++|..++.|++.++++.+..
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4445677899999999999988875544322 2223467889999999999999999999999999999999887654
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHH
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAI 393 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al 393 (523)
+.++....+..+|..+.... ||||||||+|.++..+...+.+.....++..++..+.....+++||+|||.++.+|+++
T Consensus 299 ~vGese~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred ccChHHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHH
Confidence 66678889999999887665 79999999999987655544556677888888888877777899999999999999999
Q ss_pred hc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHH
Q 009856 394 TD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 471 (523)
Q Consensus 394 ~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI 471 (523)
++ ||+..++|+.|+.++|..||+.++.+.... ..++..+..+|..|+||||+||
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~------------------------~~~~~dl~~La~~T~GfSGAdI 433 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK------------------------SWKKYDIKKLSKLSNKFSGAEI 433 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC------------------------cccccCHHHHHhhcCCCCHHHH
Confidence 87 999999999999999999999999875320 1234568999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 472 AKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 472 ~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
..+|..+...++. ....+|.++|..++..++|..
T Consensus 434 ~~lv~eA~~~A~~-~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 434 EQSIIEAMYIAFY-EKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHHHHHH-cCCCcCHHHHHHHHHhcCCCc
Confidence 9999866666654 346799999999999999964
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=270.43 Aligned_cols=247 Identities=22% Similarity=0.353 Sum_probs=201.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+..++.+...+... .++ ..+..|++++|||||||||||++|+++|..++.+|+.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457789999999999999999877642 222 223467899999999999999999999999999999998877643
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~ 388 (523)
+.++....+..+|..+.... |+||||||+|.++.++.+. +.+...+..+..++..++. ...+++||+|||.++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 44566678889999887655 7999999999998876432 2234566778888877763 3457899999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+||++++ ||+..|+|++|+.++|..||+.++.+... ..+..+..++..|+||
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l--------------------------~~dvd~~~la~~t~g~ 350 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL--------------------------SEEVDLEDFVSRPEKI 350 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC--------------------------CcccCHHHHHHHcCCC
Confidence 9999997 99999999999999999999999876543 1234688999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhcchh
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIKL 512 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~~~~ 512 (523)
||+||..+|..+...++..+...|+.+||.+++......+...+.|
T Consensus 351 sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~~~~~ 396 (398)
T PTZ00454 351 SAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDRDYDF 396 (398)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccccchhc
Confidence 9999999998777777777778999999999999987755444443
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-31 Score=283.16 Aligned_cols=244 Identities=25% Similarity=0.383 Sum_probs=210.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.....|+||.|.++++..|..++..+.|+. .+..+|+++||+||||||||+||+|+|.+.|.||+.++++++.. +
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 445789999999999999999999999864 44578899999999999999999999999999999999999876 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcc---cccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCC
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN---SIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~---~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l 389 (523)
.+.....++++|..++... |||+||||+|.+...+. ..+.+......||++|-+++ ....+++|+++||+++.+
T Consensus 385 ~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred cccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 4455788999999998766 79999999999999885 33445677789999999887 344679999999999999
Q ss_pred cHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 390 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 390 ~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
|+++++ |||..|+++.|+...|..|+..++..... ..++.++..||..|+|||
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-------------------------~~e~~dl~~~a~~t~gf~ 518 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-------------------------DDEDVDLSKLASLTPGFS 518 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-------------------------CcchhhHHHHHhcCCCCc
Confidence 999998 99999999999999999999999987654 135556777999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhc
Q 009856 468 GREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
|+||.++|+.+...+.......|+..+|..+++..+..+..+
T Consensus 519 gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 519 GADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred HHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999766666666778999999999999777765433
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=269.41 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=184.6
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-chh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~~ 316 (523)
...|.++-|.+.....|..++..+..+ ..+..|+++||||||||||||+||++||.+++.||+.+++..+.+ +.|
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 557999999999999999988877654 345579999999999999999999999999999999999998764 888
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC------CCCCEEEEEeeCCCCCCc
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD------QSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~v~iI~ttn~~~~l~ 390 (523)
++..+++++|+.|.... |||+||||||++.++|.... -+..++.+.+|+..++. ...+|+||+|||+|+.||
T Consensus 266 ESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQ-REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred ccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHH-HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 99999999999998666 79999999999999988743 44567778888877652 245799999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
|+|++ ||+..|.+..|+...|.+||+..+++... -.+-++..||..|+||.|
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl--------------------------~g~~d~~qlA~lTPGfVG 397 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRL--------------------------SGDFDFKQLAKLTPGFVG 397 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCC--------------------------CCCcCHHHHHhcCCCccc
Confidence 99998 99999999999999999999999998765 123368899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009856 469 REIAKLMASVQAAVY 483 (523)
Q Consensus 469 rdI~~L~~~~~~a~~ 483 (523)
+||..||..+-..++
T Consensus 398 ADL~AL~~~Aa~vAi 412 (802)
T KOG0733|consen 398 ADLMALCREAAFVAI 412 (802)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999975555553
No 13
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=6.7e-29 Score=258.63 Aligned_cols=244 Identities=25% Similarity=0.393 Sum_probs=197.9
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|...|+++.|.+..++.+...+... ..+ ..+..|++++|||||||||||++|+++|..++.+|+.++++.+..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 346778899999999999998876542 221 233467889999999999999999999999999999999988754
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC--cHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM--SEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~ 388 (523)
+.++....+..+|..+.... |+||||||+|.+++.+.+... +...+..+..++..++. ...+++||+|||.++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred hhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 44566677888998887654 789999999999877654322 34556677777766652 3458999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+++++++ ||+..|+|++|+.++|..||+.++..... -.+..+..++..|+||
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--------------------------~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--------------------------ADDVDLEELAELTEGA 336 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--------------------------CCcCCHHHHHHHcCCC
Confidence 9999997 99999999999999999999998876543 1223578899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhc
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
||+||..+|..+...+.......|+.+||.++++...+.+...
T Consensus 337 sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 337 SGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999998777777777778999999999999998765544
No 14
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=6.9e-29 Score=267.02 Aligned_cols=238 Identities=24% Similarity=0.398 Sum_probs=195.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+..+|++++|.+.++..+..++..+.++. .+..+++++|||||||||||++|+++|..++.||+.++++++.. .
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 567789999999999999999888766543 23567789999999999999999999999999999999887654 3
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+.... |+||||||+|.+++.+... +........++.|+..++. ...+++||+|||.++.+|
T Consensus 129 ~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred hcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 3455678899999887655 7899999999999877642 2234456778888887763 345799999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
|++++ ||+..|+|++|+.++|..|++.++..... .++..+..++..+.||||
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--------------------------~~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--------------------------APDVDLKAVARRTPGFSG 261 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--------------------------CcchhHHHHHHhCCCCCH
Confidence 99998 99999999999999999999999876433 134467899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
+||..+|+.+...+.......||.++|..+++....
T Consensus 262 adl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 262 ADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 999999986555445555678999999999998764
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.8e-29 Score=230.50 Aligned_cols=237 Identities=24% Similarity=0.355 Sum_probs=190.0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhc-c----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATAN-T----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~-~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
|..+++-+-|.+...+.+...+..-.. + ..+...|+++|||||||||||.+|+++|++..+.|+.++|+++.. +
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 444555555566666666665543211 1 123456789999999999999999999999999999999999875 7
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~ 390 (523)
.+++...++++|-.|+.+. |+|||+||||++++.|..+ +.....++....+|..++ ..++++-+|++||+.+-+|
T Consensus 222 igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild 300 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 300 (404)
T ss_pred hhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccccc
Confidence 7788899999999998877 6899999999999887532 234455666666666665 4567999999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
|++++ |+|..|+||+|+.+.|.+|++.+.++... ..--.+..||....|.||
T Consensus 301 ~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl--------------------------~rgi~l~kiaekm~gasg 354 (404)
T KOG0728|consen 301 PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL--------------------------TRGINLRKIAEKMPGASG 354 (404)
T ss_pred HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch--------------------------hcccCHHHHHHhCCCCcc
Confidence 99998 99999999999999999999999887654 111258899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
+++...|..+-..++....-.+|.+||+-++.....
T Consensus 355 aevk~vcteagm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 355 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred chhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999986666666666678999999999987653
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=227.38 Aligned_cols=239 Identities=24% Similarity=0.367 Sum_probs=200.8
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-----hcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-----~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..++.++-|.+-.++.++..+..- -+...+..||++||+|||||||||+||+++|+.....|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 467888899999988888888765532 123445689999999999999999999999999999999999999864
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.+++...++++|..|+... |+||||||+|+++.+|-+. +..-..++.|..+|..++ +...|+-+|++||+.+.
T Consensus 228 kylgegprmvrdvfrlakena-psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENA-PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHhccCcHHHHHHHHHHhccC-CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 66788999999999998766 7899999999999887653 445567788888888876 45679999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+||++++ |+|..|+||+|+..+++-++.....+... .++.+++.+..+.+..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~l--------------------------s~~vdle~~v~rpdki 360 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL--------------------------SDEVDLEDLVARPDKI 360 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC--------------------------CcccCHHHHhcCcccc
Confidence 9999998 99999999999999999999998877654 3445688888888999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
||++|..+|..+-..+......++...||+++....+.
T Consensus 361 s~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 361 SGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred chhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 99999999976665555556678999999999887664
No 17
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2.2e-28 Score=266.46 Aligned_cols=239 Identities=23% Similarity=0.371 Sum_probs=196.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchh----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
....+|++++|.+++++.+..++..+..+.. +..+++++||+||||||||++|+++|..++.||+.++++++.. .
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4567899999999999999999888776544 4566789999999999999999999999999999999988654 3
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccc--ccCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS--IHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~--~~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+.... ||||||||+|.++..+.. .+.+......++.++..++. ...+++||+|||.++.++
T Consensus 257 ~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 3344567788898887554 799999999999877653 23344556788888887753 345789999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
+++++ ||+..|.|++|+.++|..||+.++..... .++..+..+|..|.||||
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--------------------------~~d~~l~~lA~~t~G~sg 389 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--------------------------SPDVSLELIARRTPGFSG 389 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--------------------------chhHHHHHHHhcCCCCCH
Confidence 99997 99999999999999999999999876332 345678999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
+||..+++.+...+.......||.++|..+++..+..
T Consensus 390 aDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 390 ADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 9999999865544444566789999999999987543
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-29 Score=240.69 Aligned_cols=211 Identities=28% Similarity=0.459 Sum_probs=179.5
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHH-Hhcch---hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKA-TANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~~---~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
...|...|.+|-|.+.++++|...+.. +..+. ....|+++||||||||||||+||+++|.+.+..|+.++.+++.+
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 356788899999999999999886543 22222 23468899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH---hCCCCCCEEEEEeeCCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~---~~~~~~~v~iI~ttn~~~~l 389 (523)
+.++...-+..+|..|+.+. |+||||||||.+++.++.+. ++..++.-..||-. ++.+..+++|+++||-|+.|
T Consensus 205 KWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~L 282 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVL 282 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhH
Confidence 78899999999999998766 79999999999998887655 55666666666544 45777889999999999999
Q ss_pred cHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 390 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
|.++++||...|++|+|+...|..+++.++..... .+++.++..|+..|+||||.
T Consensus 283 DsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~-------------------------~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 283 DSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH-------------------------VLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred HHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc-------------------------ccchhhHHHHHhhcCCCCcC
Confidence 99999999999999999999999999988765443 58999999999999999999
Q ss_pred HHHHHH
Q 009856 470 EIAKLM 475 (523)
Q Consensus 470 dI~~L~ 475 (523)
||.-.+
T Consensus 338 DisivV 343 (439)
T KOG0739|consen 338 DISIVV 343 (439)
T ss_pred ceEEEe
Confidence 986554
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=6.9e-28 Score=251.48 Aligned_cols=239 Identities=23% Similarity=0.357 Sum_probs=193.8
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+..++.+..++... ..+ ..+..|+.++|||||||||||++|+++|..++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 356788999999999999998877642 222 223467889999999999999999999999999999999888754
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~ 388 (523)
+.++....+..+|..+.... ++||||||+|.++.++... +.....+..+..++..++. ...++.||+|||.++.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 45566677889999887654 7899999999998876532 2233455666777766652 3457999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+++++++ ||+..|+|++|+.++|..||..++.+... ..+..+..++..+.||
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--------------------------~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--------------------------AEDVDLEEFIMAKDEL 388 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--------------------------CcCcCHHHHHHhcCCC
Confidence 9999986 99999999999999999999999876543 1233678899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
||+||..+|..+...+...+...||.+||..|++..+.
T Consensus 389 sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 389 SGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 99999999987766676667789999999999998754
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=7.8e-28 Score=270.21 Aligned_cols=241 Identities=26% Similarity=0.400 Sum_probs=196.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
.+...|+++.|.+.+++.+...+... ..+ ..+..+++++|||||||||||++|+++|..++.+|+.+.++++..
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 45678999999999999999877642 221 223467789999999999999999999999999999999988754
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcH
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~ 391 (523)
+.++....+..+|..+.... |+||||||+|.+++.++....+......++.++..++ ....+++||+|||.++.+|+
T Consensus 527 ~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 66678889999999997665 7999999999999888755444556778888888876 35568999999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++++ ||+..|+|++|+.++|..||+.++.+... .++..+..+|..|+||||+
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--------------------------~~~~~l~~la~~t~g~sga 659 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--------------------------AEDVDLEELAEMTEGYTGA 659 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------CccCCHHHHHHHcCCCCHH
Confidence 9997 99999999999999999999988765433 1334689999999999999
Q ss_pred HHHHHHHHHHHHHHcC------------------CCCccCHHHHHHHHHHHHHhhh
Q 009856 470 EIAKLMASVQAAVYAR------------------PDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~------------------~~~~it~e~~~~~l~~~~~~~~ 507 (523)
||..+|..+...++.. ....|+.+||..++....|...
T Consensus 660 di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 660 DIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 9999997444433220 1236999999999998776643
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=257.30 Aligned_cols=242 Identities=26% Similarity=0.393 Sum_probs=204.5
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchh-----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKI-----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 312 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~-----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~ 312 (523)
...+...|.++.|.+.++..+...+........ +..++.++|||||||||||++|+++|..++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 456788999999999999999988776544222 456778999999999999999999999999999999999876
Q ss_pred c-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCC
Q 009856 313 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 313 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l 389 (523)
+ +.++...++..+|..|.... ||||||||+|++++.++..... ....+++.++..++ ....++++|+|||.|+.+
T Consensus 314 sk~vGesek~ir~~F~~A~~~~-p~iiFiDEiDs~~~~r~~~~~~-~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLA-PSIIFIDEIDSLASGRGPSEDG-SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCC-CcEEEEEchhhhhccCCCCCch-HHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 5 78899999999999998655 7999999999999988765422 23678888888875 566789999999999999
Q ss_pred cHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 390 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 390 ~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
|+++++ ||+..++|++|+..+|..|++.++...... ...+.++..++..++|||
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~------------------------~~~~~~~~~l~~~t~~~s 447 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP------------------------LAEDVDLEELAEITEGYS 447 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc------------------------chhhhhHHHHHHHhcCCC
Confidence 999999 999999999999999999999999864330 134568899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCccCHHHHHHHHHHHHHh
Q 009856 468 GREIAKLMASVQAAVYARP-DCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~~-~~~it~e~~~~~l~~~~~~ 505 (523)
|+||..+|..+...+.... ...+|.+||..++....|.
T Consensus 448 gadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 448 GADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 9999999986666666555 6789999999999986553
No 22
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.2e-28 Score=253.70 Aligned_cols=245 Identities=22% Similarity=0.324 Sum_probs=195.8
Q ss_pred CCcccccccCCCcccCHHHHHHHHHHHHHH-hcc---hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc
Q 009856 236 AGPVEAIKNNGDIILHPSLQRRIQHLAKAT-ANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 311 (523)
Q Consensus 236 ~~~~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~---~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~ 311 (523)
-.+.-|...|+||-|.++++..|...+..- ..+ ..+-.+..|||||||||||||.+|+|+|.++...|+.+.|+++
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 345678889999999999999998876541 111 1112334579999999999999999999999999999999998
Q ss_pred cc-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCc-HHHHHHHHHHHHHhCC----CCCCEEEEEeeCC
Q 009856 312 AP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS-EAQRSALNALLFRTGD----QSRDIVLVLATNR 385 (523)
Q Consensus 312 ~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~-~~~~~~l~~ll~~~~~----~~~~v~iI~ttn~ 385 (523)
.. +.|+...+++++|..|+.. .|||||+||+|+++++|+..+++ ..+.+++.++|.+++. ...++.||++||+
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A-~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSA-APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhcc-CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 76 6779999999999999755 48999999999999999876554 4556788889888762 5568999999999
Q ss_pred CCCCcHHHhc--cccceEeecCCCH-HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH
Q 009856 386 PGDLDSAITD--RIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK 462 (523)
Q Consensus 386 ~~~l~~al~~--Rf~~~i~~~~p~~-~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 462 (523)
|+.|||+|++ |||.-+++.+++. +.+..+|+..-+++.. -.+..+..||+.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkL--------------------------dedVdL~eiAk~ 874 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKL--------------------------DEDVDLVEIAKK 874 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccC--------------------------CCCcCHHHHHhh
Confidence 9999999998 9999999988775 5677799988887655 233468889988
Q ss_pred CC-CCCHHHHHHHHH-HHHHHHHc------CC----------CCccCHHHHHHHHHHHHHhhh
Q 009856 463 TE-GFSGREIAKLMA-SVQAAVYA------RP----------DCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 463 t~-G~sgrdI~~L~~-~~~~a~~~------~~----------~~~it~e~~~~~l~~~~~~~~ 507 (523)
|+ .|||+|+-.||. ++.+|+.. ++ .-.++++||.++++.+.|...
T Consensus 875 cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 875 CPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 65 699999999994 44444421 11 126899999999999988653
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=235.17 Aligned_cols=210 Identities=32% Similarity=0.439 Sum_probs=173.0
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc-c-----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN-T-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 312 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~-~-----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~ 312 (523)
..-..+|+++-|.+.+++.+..++..-.. + ..-..|+++||||||||||||++|+++|++.|.+|+.+.++.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 34566899999999999999987653221 1 11125789999999999999999999999999999999999887
Q ss_pred c-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHH---HHhC-CCCCCEEEEEeeCCCC
Q 009856 313 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL---FRTG-DQSRDIVLVLATNRPG 387 (523)
Q Consensus 313 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll---~~~~-~~~~~v~iI~ttn~~~ 387 (523)
+ +.++....+..+|..|.+.. |++|||||+|.++..| ....++.....=+.|+ +.+. .....++|+++||+|.
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 5 77888889999999998776 7999999999999988 4444555544444444 3333 3333688889999999
Q ss_pred CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 388 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 388 ~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
++|.++++|++..++++.|+..+|.+|++.++..... -++.++..+|..|+|||
T Consensus 243 DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~--------------------------e~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 243 DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL--------------------------EDDVDLDEIAQMTEGYS 296 (386)
T ss_pred cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc--------------------------CcccCHHHHHHhcCCCc
Confidence 9999999999999999999999999999999987654 24447899999999999
Q ss_pred HHHHHHHHH
Q 009856 468 GREIAKLMA 476 (523)
Q Consensus 468 grdI~~L~~ 476 (523)
|+||..+|.
T Consensus 297 GSDLkelC~ 305 (386)
T KOG0737|consen 297 GSDLKELCR 305 (386)
T ss_pred HHHHHHHHH
Confidence 999999996
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=254.18 Aligned_cols=245 Identities=25% Similarity=0.388 Sum_probs=208.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchh----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.....|.++.|.+++++.+..++..++++.+ +..-|+++||+||||||||+||+++|.+.+.||+.++++++.. +
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 4567899999999999999999999987643 3466789999999999999999999999999999999999877 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCCCC--CCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGDQS--RDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~~~--~~v~iI~ttn~~~~l~ 390 (523)
.+-....++.+|..|+++. |||+||||+|+....|..+ +-+..-...++++|..++... ..+++|++||+|+-+|
T Consensus 224 VGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred cCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 5566678899999998877 5999999999999888543 334455679999999987444 5899999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
|+|++ |||..|.++.|+...|..|++.++++... -.+..+..||..|.||||
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l--------------------------~~~Vdl~~iAr~tpGfsG 356 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL--------------------------AEDVDLKKIARGTPGFSG 356 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC--------------------------CCcCCHHHHhhhCCCccc
Confidence 99998 99999999999999999999988876554 122346669999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhcch
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 511 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~~~ 511 (523)
+|+.+++|.+-..+.......++..+|.++++..+....++..
T Consensus 357 AdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 357 ADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred chHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 9999999865555555677899999999999999887666554
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=1.1e-26 Score=240.90 Aligned_cols=237 Identities=27% Similarity=0.394 Sum_probs=189.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|...|++++|.+..++.+...+... .++ ..+..+++++|||||||||||++|+++|..++.+|+.+.++.+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 457778899999999999998877543 222 123467789999999999999999999999999999988776543
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~ 388 (523)
+.++....+..+|..+.... |+||||||+|.++..+.... .....+..+..++..++. ...++.||+|||.++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 34455667788888776544 78999999999987664322 234456677777776653 3458999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+++++++ ||+..|.|+.|+.++|..|++.++..... ..+..+..++..+.||
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--------------------------~~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--------------------------AEDVDLEAIAKMTEGA 327 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--------------------------CccCCHHHHHHHcCCC
Confidence 9999997 99999999999999999999998765433 1123578999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
||+||..+|..+...+.......|+.+||..+++..
T Consensus 328 sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 328 SGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999999877777777777899999999998864
No 26
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.4e-27 Score=218.75 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=196.2
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-----hcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-----~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|...+.++-|.+...+.+...+... +.-..+..||+++|+|||||||||.+|++.|...+..|..+-|+.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 357778889998877666655543321 112345678999999999999999999999999999999998888765
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC--cHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM--SEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~ 388 (523)
+.+++..-++..|..|+... |+||||||+|.++.+|.++.. .-..++....+|..++. ....+-||++||+.+-
T Consensus 244 MfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 56678888899999997655 799999999999988865432 23455666666666653 3457899999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
++|++++ |++..|+||.|+.+.|..|++.+.++... .++..++.+|..|++|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--------------------------~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--------------------------SDDVNFEELARSTDDF 376 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--------------------------CCCCCHHHHhhccccc
Confidence 9999997 99999999999999999999999887655 3455799999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
.|++....|..+-..++..+...++-+||...+..+.+
T Consensus 377 NGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 377 NGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred CchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHH
Confidence 99999999988888888888899999999999888765
No 27
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-27 Score=220.67 Aligned_cols=240 Identities=24% Similarity=0.345 Sum_probs=199.6
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHh-----cchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~-----~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..++.++-|-.+..+.++..+..-- ....+..||++||+|||||||||.+|+++|+..+..|+.+.|+++..
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 4577788999998888888888765422 22345678999999999999999999999999999999999999875
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.++....++++|..|+. +..|+||+||+|++.+.|-+. +.....++....++..++ +..+|+-++++||+|+.
T Consensus 250 kyvgegarmvrelf~mart-kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMART-KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHhhhhHHHHHHHHHHhcc-cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 777889999999999965 447999999999999887653 334556666666666665 45679999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|+|+|++ |+|..++|.+|+.+-|..|++.+.+.... -.+--++.||..|..-
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv--------------------------erdir~ellarlcpns 382 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV--------------------------ERDIRFELLARLCPNS 382 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEecccccc--------------------------ccchhHHHHHhhCCCC
Confidence 9999998 99999999999999999999988776544 2334688899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
+|++|+..|..+-.-++.....+.|..||..+++..+..
T Consensus 383 tgaeirsvcteagmfairarrk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 383 TGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999866666666677899999999999988764
No 28
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=242.37 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=179.4
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcc-----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-chh
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 316 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~-----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~~ 316 (523)
..|+++-|..+++..+.+.+..-... ..+.+-..|||||||||||||++|.++|..++..|+.+.|+++.. +.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 66899999999999999988764431 112233458999999999999999999999999999999998764 777
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcHHHh
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAIT 394 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~al~ 394 (523)
....+++.+|..|.. ..|||||+||+|.++++|+... .....+++|++|..++. .-.++.|+++|.+|+.+||+++
T Consensus 744 aSEq~vR~lF~rA~~-a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQS-AKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred ccHHHHHHHHHHhhc-cCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 888999999999964 4589999999999999987544 34567899999998873 3457899999999999999999
Q ss_pred c--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHH
Q 009856 395 D--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 472 (523)
Q Consensus 395 ~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 472 (523)
+ |+|..++.+.|+..+|.+|++...+.... -++.+++.+|..|+||||+||.
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~--------------------------~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLK--------------------------DTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCC--------------------------ccccchHHHhhhcCCCchhhHH
Confidence 8 99999999999999999999998775543 3566899999999999999999
Q ss_pred HHHHHHHHHH
Q 009856 473 KLMASVQAAV 482 (523)
Q Consensus 473 ~L~~~~~~a~ 482 (523)
.|+..++.++
T Consensus 876 ~ll~~A~l~a 885 (952)
T KOG0735|consen 876 SLLYNAQLAA 885 (952)
T ss_pred HHHHHHHHHH
Confidence 9997666555
No 29
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=5.8e-26 Score=250.13 Aligned_cols=238 Identities=24% Similarity=0.364 Sum_probs=193.2
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-ch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~ 315 (523)
....|.++.|.+..+..+..++.....+. .....++++||+||||||||++|+++|..++.||+.++++++.. +.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 35568899999999999999887655422 23345678999999999999999999999999999999987654 33
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcH
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~ 391 (523)
+.....+..+|..+.... ||||||||+|.++..+..+ +.+......++.+|..++. ...+++||+|||+++.+|+
T Consensus 227 g~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred cccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 455567888898886554 7999999999998877642 3344556788888877763 3457899999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++++ ||+..|.|+.|+.++|..|+..++.+... ..+..+..++..|.||||+
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l--------------------------~~~~d~~~la~~t~G~sga 359 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--------------------------APDIDAAIIARGTPGFSGA 359 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC--------------------------CCcCCHHHHHhhCCCCCHH
Confidence 9997 99999999999999999999999987543 1223467799999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
||..+|+.+...+...+...|+..+|..+++...+.
T Consensus 360 dl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 360 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 999999877766666677899999999999877554
No 30
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-27 Score=223.56 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=193.3
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc-----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~-----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|.++-|.+...+.+...+..--. -..+..||++|+|||+||||||.||+++|+.....|+.+.|+++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45788899999987777666655432111 1234578999999999999999999999999999999999999874
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC--cHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM--SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.++...-++.+|..|..+. |+|+||||||++..+|.+... .-..++.+..+|..++ +..+++-||++||..+.
T Consensus 258 kylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 66788889999999998776 689999999999988864332 2344556666776665 34568999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|||+|.+ |+|..|.|+.|+...+..||..+..+... -.+..++.+...-+.+
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl--------------------------~~dVnle~li~~kddl 390 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL--------------------------AEDVNLEELIMTKDDL 390 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccch--------------------------hccccHHHHhhccccc
Confidence 9999998 99999999999999999999988766543 1233577777777789
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
||+||..+|..+-..+.....-.+|.+||.++.+.++.
T Consensus 391 SGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 391 SGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred ccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999987777777666678999999999988765
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=5.5e-26 Score=259.90 Aligned_cols=208 Identities=14% Similarity=0.202 Sum_probs=163.7
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccc------------h------------------------
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL------------G------------------------ 315 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~------------~------------------------ 315 (523)
..|++||||+||||||||+||+++|..++.||+.++++++... +
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3678899999999999999999999999999999998876521 0
Q ss_pred ------hhHHH--HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC-----CCCCEEEEEe
Q 009856 316 ------AQAVT--KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----QSRDIVLVLA 382 (523)
Q Consensus 316 ------~~~~~--~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----~~~~v~iI~t 382 (523)
+...+ .++.+|..|+..+ ||||||||||.++.+.. ....+..++..++. ...+|+||+|
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~S-PCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMS-PCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCC-CeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 11122 3788899998776 79999999999976421 11235666666642 3458999999
Q ss_pred eCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHH
Q 009856 383 TNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA 460 (523)
Q Consensus 383 tn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 460 (523)
||.|+.+||||++ |||..|.++.|+..+|.+++...+..... .. .-+...++.+|
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~----------------------~L-~~~~vdl~~LA 1835 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGF----------------------HL-EKKMFHTNGFG 1835 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCC----------------------CC-CcccccHHHHH
Confidence 9999999999998 99999999999999999988765432111 00 00112478899
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhcc
Q 009856 461 RKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRI 510 (523)
Q Consensus 461 ~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~~ 510 (523)
..|.||||+||..||+.+...+...+...|+.++|+.|++..+.....++
T Consensus 1836 ~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~ 1885 (2281)
T CHL00206 1836 SITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQV 1885 (2281)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999997777777778889999999999999988765543
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=3.6e-25 Score=234.02 Aligned_cols=252 Identities=21% Similarity=0.279 Sum_probs=183.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------e
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------Y 303 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------~ 303 (523)
..|..+|++|.|.+..++.+...+... ..+ ..+..|++++|||||||||||++|+++|+.++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 446788999999999999998876532 221 2234678899999999999999999999998655 3
Q ss_pred eEEecCCcc-cchhhHHHHHHHHHHHHHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCE
Q 009856 304 AMMTGGDVA-PLGAQAVTKIHEIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDI 377 (523)
Q Consensus 304 ~~v~~~~~~-~~~~~~~~~l~~~f~~a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~v 377 (523)
+.+.++.+. .+.++....+..+|..+... ..++||||||+|.++++++++..+......++.|+..++. ...++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 344444443 35567777888899887653 2579999999999998877654444556677888887763 33689
Q ss_pred EEEEeeCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 378 VLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
+||+|||+++.|||++++ ||+..|+|++|+.+++..||..++..... .... + .. ....+...
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~---l~~~---l----~~------~~g~~~a~ 398 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP---LDAD---L----AE------FDGDREAT 398 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC---chHH---H----HH------hcCCCHHH
Confidence 999999999999999998 99999999999999999999999875321 0000 0 00 00111111
Q ss_pred HHH-----------------------------HHHHCCCCCHHHHHHHHHHHHHHHHc----CCCCccCHHHHHHHHHHH
Q 009856 456 IQE-----------------------------AARKTEGFSGREIAKLMASVQAAVYA----RPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 456 l~~-----------------------------la~~t~G~sgrdI~~L~~~~~~a~~~----~~~~~it~e~~~~~l~~~ 502 (523)
+.. +...++.+||+.|.++|..+...++. .....|+.+|+..++.+-
T Consensus 399 ~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 399 AAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHh
Confidence 111 11235679999999999876655542 344689999999999887
Q ss_pred HHhh
Q 009856 503 VEEH 506 (523)
Q Consensus 503 ~~~~ 506 (523)
..++
T Consensus 479 ~~~~ 482 (512)
T TIGR03689 479 FRES 482 (512)
T ss_pred hccc
Confidence 6544
No 33
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-25 Score=232.69 Aligned_cols=307 Identities=19% Similarity=0.265 Sum_probs=244.1
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhhhccccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCCC
Q 009856 123 TEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQP 202 (523)
Q Consensus 123 ~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~~ 202 (523)
..|+.+.+++++ ..++...++.++.. +|+.+++++++++.+..+|.++|.|++ +|+.||+..+
T Consensus 48 ~~~lvl~Di~mp-~~~Gl~ll~~i~~~-------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~---Dfl~KP~~~~ 110 (464)
T COG2204 48 PFDLVLLDIRMP-GMDGLELLKEIKSR-------------DPDLPVIVMTGHGDIDTAVEALRLGAF---DFLEKPFDLD 110 (464)
T ss_pred CCCEEEEecCCC-CCchHHHHHHHHhh-------------CCCCCEEEEeCCCCHHHHHHHHhcCcc---eeeeCCCCHH
Confidence 678899999888 45788888888776 899999999999999999999999995 9999999877
Q ss_pred CcccccCCCCCCCchhhHHHHHHHHhhcCCCCCCCcccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEc
Q 009856 203 SLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYG 282 (523)
Q Consensus 203 ~l~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~G 282 (523)
.+.. .+.+++.......+... ........+..+||.+..++.+.+.+..+..+..+ |||+|
T Consensus 111 ~L~~-----------~v~ral~~~~~~~e~~~--~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~------VLI~G 171 (464)
T COG2204 111 RLLA-----------IVERALELRELQRENRR--SLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDAS------VLITG 171 (464)
T ss_pred HHHH-----------HHHHHHHHhhhhhhhhh--hhhccccccCCceecCHHHHHHHHHHHHHhCCCCC------EEEEC
Confidence 7765 55566554322111110 11222356789999999999999999998887766 99999
Q ss_pred CCCCchHHHHHHHHHHhC---CCeeEEecCCccc--chhhHHHHHHHHHHHHHhcC-------CceEEEEccchhhhhhc
Q 009856 283 PPGTGKTMVAREIARKSG---LDYAMMTGGDVAP--LGAQAVTKIHEIFDWAKKSK-------KGLLLFIDEADAFLCER 350 (523)
Q Consensus 283 ppGtGKT~lA~ala~~l~---~~~~~v~~~~~~~--~~~~~~~~l~~~f~~a~~~~-------~~~vL~iDEid~l~~~~ 350 (523)
++||||..+|++|+..+. .||+.+||+.+.. +.++.+++-.+.|+.|...+ .++.||||||..+
T Consensus 172 ESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m---- 247 (464)
T COG2204 172 ESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM---- 247 (464)
T ss_pred CCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC----
Confidence 999999999999999884 5999999999886 66778888888888876544 4578999999775
Q ss_pred ccccCcHHHHHHHHHHHHH-----hCCC---CCCEEEEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH--
Q 009856 351 NSIHMSEAQRSALNALLFR-----TGDQ---SRDIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK-- 413 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~-----~~~~---~~~v~iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~-- 413 (523)
+...|..|..+++. ++.. .-++.||++||.. ..+.+.|.-|+ .++.+..|+..+|.+
T Consensus 248 -----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDI 321 (464)
T COG2204 248 -----PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDI 321 (464)
T ss_pred -----CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhH
Confidence 67888888888875 3322 2388999999873 35667777788 899999999987776
Q ss_pred --HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccC
Q 009856 414 --LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLD 491 (523)
Q Consensus 414 --il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it 491 (523)
++++|+.+... ..+.....++++.+..+..+. |+| +++.|.|.++.++..+....++
T Consensus 322 p~L~~hfl~~~~~------------------~~~~~~~~~s~~a~~~L~~y~--WPG-NVREL~N~ver~~il~~~~~i~ 380 (464)
T COG2204 322 PLLAEHFLKRFAA------------------ELGRPPKGFSPEALAALLAYD--WPG-NVRELENVVERAVILSEGPEIE 380 (464)
T ss_pred HHHHHHHHHHHHH------------------HcCCCCCCCCHHHHHHHHhCC--CCh-HHHHHHHHHHHHHhcCCccccc
Confidence 88888887655 333445579999999997764 666 9999999999999999888888
Q ss_pred HHHHH
Q 009856 492 SQLFR 496 (523)
Q Consensus 492 ~e~~~ 496 (523)
.+++.
T Consensus 381 ~~~l~ 385 (464)
T COG2204 381 VEDLP 385 (464)
T ss_pred hhhcc
Confidence 77754
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=9.8e-24 Score=210.44 Aligned_cols=194 Identities=15% Similarity=0.214 Sum_probs=147.2
Q ss_pred cccCCCccc----CHHHHHHHH-HHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-ch
Q 009856 242 IKNNGDIIL----HPSLQRRIQ-HLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 315 (523)
Q Consensus 242 ~~~~~~vig----~~~~~~~l~-~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~ 315 (523)
..+|+++.| .|...+.+. .+....- ...+..+|.+++||||||||||++|+++|..+|.+++.++++++.+ +.
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l-~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFL-ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhh-hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 445555544 455554443 2222111 1234578899999999999999999999999999999999998764 88
Q ss_pred hhHHHHHHHHHHHHHhc----CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------------CCCCCE
Q 009856 316 AQAVTKIHEIFDWAKKS----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------------DQSRDI 377 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------------~~~~~v 377 (523)
++....++.+|..|... ..||||||||||++++.+.+.......+-+...|+..++ .....+
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 89999999999988743 468999999999999988644323233444456665543 234578
Q ss_pred EEEEeeCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 378 VLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
.||+|||.|+.|+|+|++ ||+..+ ..|+.++|..|++.+++... ++...
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~---------------------------l~~~d 320 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG---------------------------VSRED 320 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC---------------------------CCHHH
Confidence 999999999999999999 998854 58999999999999987642 46677
Q ss_pred HHHHHHHCCC
Q 009856 456 IQEAARKTEG 465 (523)
Q Consensus 456 l~~la~~t~G 465 (523)
+..|+..+.|
T Consensus 321 v~~Lv~~f~g 330 (413)
T PLN00020 321 VVKLVDTFPG 330 (413)
T ss_pred HHHHHHcCCC
Confidence 8888888777
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.8e-24 Score=217.80 Aligned_cols=240 Identities=26% Similarity=0.342 Sum_probs=189.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhc----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|+++-|...+++.+...+..... ...-..|.+++||.||||||||+++++||.+++..|+.++++.+.+ +
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 3456789999999999999887665332 1223467889999999999999999999999999999999998875 6
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHH-HHhC---CCCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL-FRTG---DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll-~~~~---~~~~~v~iI~ttn~~~~l~ 390 (523)
.|+....++.+|..|+... |+|+||||+|.++.+|.... .+..+.....++ +..+ ....+++||+|||.|+.+|
T Consensus 227 ~Ge~eK~vralf~vAr~~q-PsvifidEidslls~Rs~~e-~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKRSDNE-HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred cChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhcCCcc-cccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 6777888999999997655 78999999999999995433 333333333333 3322 3344899999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
.++++||...++||+|+.+.|..+|..++..... .+++..++.|+..|+|||+.|
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~-------------------------~l~~~d~~~l~~~Tegysgsd 359 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPN-------------------------GLSDLDISLLAKVTEGYSGSD 359 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCC-------------------------CccHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999987633 478889999999999999999
Q ss_pred HHHHHHHHHHHHHc-------------CCCCccCHHHHHHHHHHHHHhh
Q 009856 471 IAKLMASVQAAVYA-------------RPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 471 I~~L~~~~~~a~~~-------------~~~~~it~e~~~~~l~~~~~~~ 506 (523)
|..+|..+...-.. ..-..++..+|..++....+..
T Consensus 360 i~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 360 ITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred HHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 99999643321111 1123567778888888776654
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-23 Score=216.35 Aligned_cols=233 Identities=27% Similarity=0.404 Sum_probs=191.6
Q ss_pred CCcccCHHHHHHHHHHHHHHhc-----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc-cchhhHH
Q 009856 246 GDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAV 319 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~-----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~-~~~~~~~ 319 (523)
+.+.|.......+..++..... ...+..|++++|+|||||||||.+++++|++.+..++.++++.+. .+.+++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 4556666666666665543221 123457889999999999999999999999999999999999765 4788999
Q ss_pred HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcHHHhc-c
Q 009856 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAITD-R 396 (523)
Q Consensus 320 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~al~~-R 396 (523)
.+++..|..+.....|+++||||+|.+++++..... ...++...++..++. ...++++|++||+|+.|++++++ |
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCC
Confidence 999999999998887899999999999998876543 345566666655553 34789999999999999999997 9
Q ss_pred ccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHH
Q 009856 397 IDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMA 476 (523)
Q Consensus 397 f~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~ 476 (523)
||..+.+..|+...|.+|++.+++++.. .++..+..+|..|.||.|+|+..+|.
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~~--------------------------~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMNL--------------------------LSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcCC--------------------------cchhhHHHHHHHccchhHHHHHHHHH
Confidence 9999999999999999999999998765 35678999999999999999999998
Q ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhcch
Q 009856 477 SVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 511 (523)
Q Consensus 477 ~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~~~ 511 (523)
.+...+... |.++|..+.....|...+.+-
T Consensus 396 ea~~~~~r~-----~~~~~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 396 EASLQATRR-----TLEIFQEALMGIRPSALREIL 425 (693)
T ss_pred HHHHHHhhh-----hHHHHHHHHhcCCchhhhhee
Confidence 666555543 888999999998888776654
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=8.9e-23 Score=229.40 Aligned_cols=241 Identities=24% Similarity=0.399 Sum_probs=186.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHh-cc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
.+..+|++++|.+..++.+..++.... .+ ..+..+++++|||||||||||++|+++|..++.+++.++++++..
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 356789999999999999988776432 21 223367789999999999999999999999999999999887654
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcH
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~ 391 (523)
+.+.....+..+|..+.... ++||||||+|.+++.+.... .......++.|+..++. ....++||++||.++.+++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 55566778899999887654 68999999999988765432 22334555666655542 3457889999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++.+ ||+..+.|+.|+.++|..|++.+...... ..+..++.++..+.||+++
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l--------------------------~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL--------------------------AEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------ccccCHHHHHHhCCCCCHH
Confidence 9987 99999999999999999999977665432 2334688999999999999
Q ss_pred HHHHHHHHHHHHHHcC-------------------CCCccCHHHHHHHHHHHHHhhhh
Q 009856 470 EIAKLMASVQAAVYAR-------------------PDCVLDSQLFREVVEYKVEEHHQ 508 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~-------------------~~~~it~e~~~~~l~~~~~~~~~ 508 (523)
||..++..+...++.. ....++.++|..++....|...+
T Consensus 384 dl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 384 DLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccc
Confidence 9999997544433211 11257889999999888776533
No 38
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=200.73 Aligned_cols=235 Identities=23% Similarity=0.371 Sum_probs=179.9
Q ss_pred cccCCCcccCHHHHHHHHHHHH-HHhc----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-ch
Q 009856 242 IKNNGDIILHPSLQRRIQHLAK-ATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 315 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~-~~~~----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~ 315 (523)
..+|+++-|.-.....+...+. .+.+ .+.+..||.+++||||||||||.+|+++|..+|.+|+.+..+.+.. ..
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 4578888887777666666443 2222 2345678999999999999999999999999999999998888764 77
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC--cHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcH
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM--SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~ 391 (523)
++...-+++.|..|.... +|+||+||+|+.++.+.+.+. ....+..|..++..++ +....+-+|+|||.|+.|+|
T Consensus 208 GEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred ccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 789999999999998877 599999999999988755432 3345667777777765 34567899999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
+|++ |++..+.+|.|+...|..|++.+...... +..-..+.+.+.++||.|.
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~--------------------------~Geid~eaivK~~d~f~ga 340 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF--------------------------HGEIDDEAILKLVDGFNGA 340 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccc--------------------------cccccHHHHHHHHhccChH
Confidence 9998 99999999999999999877655433221 1222367788889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
|+++.|..+-.-+.......+-.+++.+++....
T Consensus 341 d~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 341 DLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred HHhhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 9999886443333333344566777777776654
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-23 Score=214.66 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=175.1
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhC-CCeeEEecCCccc-chhhHHHHHHHHHHHHHhc-------CCceEEEEccc
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSG-LDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKS-------KKGLLLFIDEA 343 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~-~~~~~v~~~~~~~-~~~~~~~~l~~~f~~a~~~-------~~~~vL~iDEi 343 (523)
...+++|||||||||||.+|+.|..-++ .+--.+||+.+.. +.+++..+++.+|..|... +.-.||++||+
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence 4557899999999999999999999985 4566788888764 7789999999999887531 12358999999
Q ss_pred hhhhhhcccc-cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHH
Q 009856 344 DAFLCERNSI-HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLY 418 (523)
Q Consensus 344 d~l~~~~~~~-~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~ 418 (523)
|+++..|.+. +.+..+..++|+||..++ +.-.|+.+|+.||+.+.+|.+|++ ||...+++.+|+..-|.+|++.+
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 9999998764 345677789999998887 456799999999999999999998 99999999999999999999998
Q ss_pred HHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCC------------
Q 009856 419 LKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP------------ 486 (523)
Q Consensus 419 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~------------ 486 (523)
.++...... --++.++..||..|..|||++|..|+.+++..+..+.
T Consensus 414 T~rMre~~~----------------------l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~ 471 (744)
T KOG0741|consen 414 TKRMRENNK----------------------LSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPV 471 (744)
T ss_pred hhhhhhcCC----------------------CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCch
Confidence 877643111 1345579999999999999999999998888776421
Q ss_pred ---CCccCHHHHHHHHHHHHHhh
Q 009856 487 ---DCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 487 ---~~~it~e~~~~~l~~~~~~~ 506 (523)
.-.++++||..++++..|..
T Consensus 472 ~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 472 AIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred hhhheeecHHHHHHHHHhcCccc
Confidence 11579999999999988865
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=6.1e-22 Score=185.94 Aligned_cols=191 Identities=29% Similarity=0.446 Sum_probs=133.4
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 320 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~ 320 (523)
.+.+|+++||+++++..+.-++..... .+.+..|+|||||||+||||||+.||++++.+|..++++.+... +
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~---r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~-----~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKK---RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA-----G 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHC---TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-----H
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHh---cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-----H
Confidence 456899999999999998877766543 23456689999999999999999999999999999888654332 2
Q ss_pred HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh------CCC---------CCCEEEEEeeCC
Q 009856 321 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT------GDQ---------SRDIVLVLATNR 385 (523)
Q Consensus 321 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~------~~~---------~~~v~iI~ttn~ 385 (523)
.+..++.. ...+.|||||||+.| +...+..|...+... +.. -.++.+|++|..
T Consensus 91 dl~~il~~---l~~~~ILFIDEIHRl---------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 91 DLAAILTN---LKEGDILFIDEIHRL---------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp HHHHHHHT-----TT-EEEECTCCC-----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred HHHHHHHh---cCCCcEEEEechhhc---------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 23333332 235789999999997 557778887777542 211 136889999999
Q ss_pred CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 386 PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 386 ~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
...+.++|++||..+..+..|+.++...|+......... .++++....||.++.|
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-------------------------~i~~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-------------------------EIDEDAAEEIARRSRG 213 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--------------------------EE-HHHHHHHHHCTTT
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-------------------------CcCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999987665544 5889999999999999
Q ss_pred CCHHHHHHHHHH
Q 009856 466 FSGREIAKLMAS 477 (523)
Q Consensus 466 ~sgrdI~~L~~~ 477 (523)
+||-...|+..
T Consensus 214 -tPRiAnrll~r 224 (233)
T PF05496_consen 214 -TPRIANRLLRR 224 (233)
T ss_dssp -SHHHHHHHHHH
T ss_pred -ChHHHHHHHHH
Confidence 77766666653
No 41
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-21 Score=211.69 Aligned_cols=235 Identities=19% Similarity=0.274 Sum_probs=177.0
Q ss_pred cccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCCCCcccccCCCCCCCchhhHHHHHHHHhhcCCCCCCCccccc
Q 009856 163 DRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAI 242 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~~~l~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (523)
+++.+..+++.||+++++. +..++.++.+..+..+.
T Consensus 455 ~~~~Ia~vv~~~TgIPv~~--------l~~~e~~kll~le~~L~------------------------------------ 490 (786)
T COG0542 455 DEDDIAEVVARWTGIPVAK--------LLEDEKEKLLNLERRLK------------------------------------ 490 (786)
T ss_pred CHHHHHHHHHHHHCCChhh--------hchhhHHHHHHHHHHHh------------------------------------
Confidence 6777888888888887765 44555555553333332
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcc-hhcCCCCceEEEEcCCCCchHHHHHHHHHHhC---CCeeEEecCC--------
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGD-------- 310 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~~~~-------- 310 (523)
..|+|++++...+...++..+.+ ..+..|..++||.||+|+|||.+|++||..+. ..++.+++|+
T Consensus 491 ---~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 ---KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred ---cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 78999999999999988877764 45567888999999999999999999999995 6677777554
Q ss_pred ------cccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------C
Q 009856 311 ------VAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------Q 373 (523)
Q Consensus 311 ------~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----------~ 373 (523)
.+++|.+..+. ++.+.+.+|++||+||||++ .+.++++.||+.+++ +
T Consensus 568 rLIGaPPGYVGyeeGG~----LTEaVRr~PySViLlDEIEK------------AHpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVILLDEIEK------------AHPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHhCCCCCCceeccccc----hhHhhhcCCCeEEEechhhh------------cCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 34445444444 45555888999999999998 567788888887753 4
Q ss_pred CCCEEEEEeeCCCC----------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccC
Q 009856 374 SRDIVLVLATNRPG----------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 425 (523)
Q Consensus 374 ~~~v~iI~ttn~~~----------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~ 425 (523)
++|++||+|||... .+.|+|++|++.+|.|.+.+.+....|+..++......
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~ 711 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR 711 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 66899999999531 36799999999999999999999999999999876541
Q ss_pred CCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCC--CCCHHHHHHHHH
Q 009856 426 DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GFSGREIAKLMA 476 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~sgrdI~~L~~ 476 (523)
.. ..++.+ .++++..+.|+..+. .|.+|-|+.++.
T Consensus 712 L~---------------~~~i~l-~~s~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 712 LA---------------ERGITL-ELSDEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HH---------------hCCceE-EECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence 00 111222 589999999998753 466677777663
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.5e-21 Score=194.88 Aligned_cols=217 Identities=26% Similarity=0.377 Sum_probs=165.9
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 320 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~ 320 (523)
.+.+|+++||++++...-.-+-+.+. .....+++|||||||||||+|+.||...+.+|..++... ....
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------ccHH
Confidence 46788999999988744322222222 233457999999999999999999999999999987743 4556
Q ss_pred HHHHHHHHHHhcC---CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee--CCCCCCcHHHhc
Q 009856 321 KIHEIFDWAKKSK---KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSAITD 395 (523)
Q Consensus 321 ~l~~~f~~a~~~~---~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt--n~~~~l~~al~~ 395 (523)
.++.++..+.... +..|||||||+.| +...++.|...+ ..+.+++|++| |+.-.++++|+|
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRf---------nK~QQD~lLp~v-----E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRF---------NKAQQDALLPHV-----ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhc---------Chhhhhhhhhhh-----cCCeEEEEeccCCCCCeeecHHHhh
Confidence 7788888875443 3689999999997 456677777776 56778888866 666689999999
Q ss_pred cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHH
Q 009856 396 RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLM 475 (523)
Q Consensus 396 Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~ 475 (523)
|+ .++.|.+.+.++...++..-+......... ....++++.++.|+..+.| |.+.++
T Consensus 154 R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~------------------~~~~i~~~a~~~l~~~s~G----D~R~aL 210 (436)
T COG2256 154 RA-RVFELKPLSSEDIKKLLKRALLDEERGLGG------------------QIIVLDEEALDYLVRLSNG----DARRAL 210 (436)
T ss_pred hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCc------------------ccccCCHHHHHHHHHhcCc----hHHHHH
Confidence 99 899999999999999999844332220000 0113789999999999999 999999
Q ss_pred HHHHHHHHcCCCC-ccCHHHHHHHHHHHHHh
Q 009856 476 ASVQAAVYARPDC-VLDSQLFREVVEYKVEE 505 (523)
Q Consensus 476 ~~~~~a~~~~~~~-~it~e~~~~~l~~~~~~ 505 (523)
+.++.++...... .++.+++..++....+.
T Consensus 211 N~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~ 241 (436)
T COG2256 211 NLLELAALSAEPDEVLILELLEEILQRRSAR 241 (436)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHhhhhhc
Confidence 9999999886544 56688888888876553
No 43
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.87 E-value=7.9e-21 Score=181.45 Aligned_cols=216 Identities=23% Similarity=0.347 Sum_probs=174.1
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 320 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~ 320 (523)
.+..|+++||++.+++.+.-++.+.+. .+...-|+|||||||.||||||..+|+++|.++...+|+.+... +
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~---r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-----g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKK---RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-----G 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHh---cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-----h
Confidence 356789999999999999888776543 35566789999999999999999999999999988877665432 2
Q ss_pred HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh------CC---------CCCCEEEEEeeCC
Q 009856 321 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT------GD---------QSRDIVLVLATNR 385 (523)
Q Consensus 321 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~------~~---------~~~~v~iI~ttn~ 385 (523)
.+..+++ ...++.|||||||+.+ ++....+|...+..+ +. +-.++.+|++|.+
T Consensus 93 DlaaiLt---~Le~~DVLFIDEIHrl---------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 93 DLAAILT---NLEEGDVLFIDEIHRL---------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred hHHHHHh---cCCcCCeEEEehhhhc---------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 3444443 3446889999999998 335556666655432 11 2247889999999
Q ss_pred CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 386 PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 386 ~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
...+...|++||+.+..+..|+.++...|+......... +++++....||.++.|
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-------------------------~i~~~~a~eIA~rSRG 215 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-------------------------EIDEEAALEIARRSRG 215 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-------------------------CCChHHHHHHHHhccC
Confidence 999999999999999999999999999999998876655 5889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
+||=...|+..+.--+...+...|+.+..+++++..
T Consensus 216 -TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 216 -TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred -CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 787778888888877777788899998888887754
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=8.8e-21 Score=189.43 Aligned_cols=172 Identities=26% Similarity=0.338 Sum_probs=123.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcch-------hcCCCCceEEEEcCCCCchHHHHHHHHHHh-------CCCeeEEecCCc
Q 009856 246 GDIILHPSLQRRIQHLAKATANTK-------IHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAMMTGGDV 311 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~-------~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~v~~~~~ 311 (523)
.+++|.+.+++.+..++....... ....++.+++|+||||||||++|+++|..+ ..+++.++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 479999999999998875433211 111234579999999999999999999876 235777777665
Q ss_pred cc-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC---
Q 009856 312 AP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 387 (523)
Q Consensus 312 ~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~--- 387 (523)
.. +.+........+|..+ .++||||||++.+...++... .....+..++..++....+++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a----~ggVLfIDE~~~l~~~~~~~~---~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA----MGGVLFIDEAYYLYKPDNERD---YGSEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHc----cCCEEEEEccchhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 33 3333344455566543 367999999999865433222 234556666666666667888888876422
Q ss_pred --CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhcc
Q 009856 388 --DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 424 (523)
Q Consensus 388 --~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~ 424 (523)
.++|+|.+||+.+|.|++|+.+++..|+..++.+...
T Consensus 176 ~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~ 214 (287)
T CHL00181 176 FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY 214 (287)
T ss_pred HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC
Confidence 3579999999999999999999999999999987643
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.87 E-value=3.4e-20 Score=189.75 Aligned_cols=215 Identities=23% Similarity=0.330 Sum_probs=163.1
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHH
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 321 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~ 321 (523)
+.+|++++|++..+..+..++..... .+.+++++|||||||||||++|+++|+.++.++..++++.+... ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~---~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~-----~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK---RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP-----GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh---cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh-----HH
Confidence 45789999999999999877765432 24456789999999999999999999999998887766543221 22
Q ss_pred HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh------CC---------CCCCEEEEEeeCCC
Q 009856 322 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT------GD---------QSRDIVLVLATNRP 386 (523)
Q Consensus 322 l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~------~~---------~~~~v~iI~ttn~~ 386 (523)
+..++.. ...++||||||+|.+.. .....+..++... +. .-.++++|++||.+
T Consensus 93 l~~~l~~---l~~~~vl~IDEi~~l~~---------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~ 160 (328)
T PRK00080 93 LAAILTN---LEEGDVLFIDEIHRLSP---------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA 160 (328)
T ss_pred HHHHHHh---cccCCEEEEecHhhcch---------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence 3333332 34578999999998732 2333444443321 11 11357899999999
Q ss_pred CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 387 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 387 ~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
..+++++.+||+.++.|++|+.+++..|+...+..... .++++.+..|+..+.|
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-------------------------~~~~~~~~~ia~~~~G- 214 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-------------------------EIDEEGALEIARRSRG- 214 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-------------------------CcCHHHHHHHHHHcCC-
Confidence 99999999999999999999999999999988876543 4789999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
++|.+..++..+...+...+...|+.+++..++...
T Consensus 215 ~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 215 TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 557888888776666655555789999999998764
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.2e-20 Score=186.85 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=127.0
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcc-------hhcCCCCceEEEEcCCCCchHHHHHHHHHHh-------CCCeeEEecCC
Q 009856 245 NGDIILHPSLQRRIQHLAKATANT-------KIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAMMTGGD 310 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~-------~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~v~~~~ 310 (523)
+++++|.+.+++.|..++...... ....+...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 478999999999999887665321 1112334689999999999999999999875 23567777766
Q ss_pred ccc-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC--
Q 009856 311 VAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 387 (523)
Q Consensus 311 ~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~-- 387 (523)
+.. +.++....+..+|..+ .++||||||+|.|..... +......++.++..++....++++|++++..+
T Consensus 85 l~~~~~g~~~~~~~~~~~~a----~~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA----LGGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHhc----cCCEEEEechhhhccCCc----cchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 543 3445556667777554 367999999999864211 12335567778887777777888888765432
Q ss_pred ---CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 388 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 388 ---~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
.++|++.+||+..|.||+|+.+++..|++.++....
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999987643
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.86 E-value=5.1e-20 Score=186.63 Aligned_cols=212 Identities=23% Similarity=0.325 Sum_probs=156.1
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIH 323 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~ 323 (523)
+|+++||++.++..+..++...... ..++.+++|+||||||||++|+++|+.++.++..+.++..... ..+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~-----~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP-----GDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----hhHH
Confidence 6799999999999988877544332 2345679999999999999999999999988777665443221 1222
Q ss_pred HHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC---------------CCCCCEEEEEeeCCCCC
Q 009856 324 EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---------------DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 324 ~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---------------~~~~~v~iI~ttn~~~~ 388 (523)
..+. ....+.+|||||++.+.+ .....+..++.... ....++++|++||.+..
T Consensus 74 ~~l~---~~~~~~vl~iDEi~~l~~---------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 74 AILT---NLEEGDVLFIDEIHRLSP---------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGM 141 (305)
T ss_pred HHHH---hcccCCEEEEehHhhhCH---------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccc
Confidence 2222 233467999999998743 22333433332211 12235789999999999
Q ss_pred CcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 389 LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 389 l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
+++++++||..++.|++|+.+++..++...+..... .++++.++.|+..+.| ++
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-------------------------~~~~~al~~ia~~~~G-~p 195 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-------------------------EIEPEAALEIARRSRG-TP 195 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-------------------------CcCHHHHHHHHHHhCC-Cc
Confidence 999999999888999999999999999988775433 4789999999999988 55
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
|.+..++..+...+.......+|.+++..++..
T Consensus 196 R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 196 RIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 677777776554443444567999999999987
No 48
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-20 Score=208.97 Aligned_cols=214 Identities=27% Similarity=0.431 Sum_probs=171.8
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc-----chhcCCCCceEEEEcCCCCchHHHHHHHHHHhC-----CCeeEEec
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTG 308 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~-----~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~-----~~~~~v~~ 308 (523)
......|+++-|.+.+...+...+...-- ...+..|++++||+||||||||+.|+++|..+. ..|+.-.|
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34567899999999999999887654321 233457899999999999999999999999883 44555567
Q ss_pred CCcc-cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCC
Q 009856 309 GDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNR 385 (523)
Q Consensus 309 ~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~ 385 (523)
++.. .+.++....+.-+|..|.+.. |+|+|+||||-|++.+++... ..+..++..+|..++ +..+.++||+|||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskqE-qih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQE-QIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchHH-HhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 7654 488899999999999998766 799999999999988865431 122344455555554 35568999999999
Q ss_pred CCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 386 PGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 386 ~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
++.++|++++ ||+..++|++|+.+.|..|+..+-.+... .++...+..+|..|
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~-------------------------~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP-------------------------PISRELLLWLAEET 470 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC-------------------------CCCHHHHHHHHHhc
Confidence 9999999988 99999999999999999999998766543 36777899999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 009856 464 EGFSGREIAKLMASVQ 479 (523)
Q Consensus 464 ~G~sgrdI~~L~~~~~ 479 (523)
.||-|+||+.||..+-
T Consensus 471 ~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEAA 486 (1080)
T ss_pred cccchHHHHHHHHHHh
Confidence 9999999999997433
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=3.9e-20 Score=193.25 Aligned_cols=210 Identities=21% Similarity=0.239 Sum_probs=152.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCee--EEe----------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--MMT---------- 307 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~--~v~---------- 307 (523)
+.+.+|+++||++.+...|...+.. +..+..+||+||||||||++|+.+|+.+++... ...
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~-------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i 84 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS-------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHH
Confidence 4577899999999999988776552 233345899999999999999999999876310 000
Q ss_pred ----cCCcccchh---hHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 009856 308 ----GGDVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 377 (523)
Q Consensus 308 ----~~~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v 377 (523)
..++..+.. .....++.+...+ .....+.|+||||+|.|. ...++.||..++.++.++
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHHHhhcCCCce
Confidence 011111110 1122333333332 223456799999999872 346777888888888999
Q ss_pred EEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHH
Q 009856 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 457 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (523)
+||++|+.+..+.++++||| ..+.|..++.++....+...+..... .++++.+.
T Consensus 153 iFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi-------------------------~~e~eAL~ 206 (484)
T PRK14956 153 VFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENV-------------------------QYDQEGLF 206 (484)
T ss_pred EEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999999 88999999999999999888876543 47899999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 458 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 458 ~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
.|+..+.| +++..++.++.++... .+.||.+.+..++
T Consensus 207 ~Ia~~S~G----d~RdAL~lLeq~i~~~-~~~it~~~V~~~l 243 (484)
T PRK14956 207 WIAKKGDG----SVRDMLSFMEQAIVFT-DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHcCC----hHHHHHHHHHHHHHhC-CCCcCHHHHHHHh
Confidence 99999999 7777777665544333 3468888877655
No 50
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=5.6e-20 Score=194.84 Aligned_cols=208 Identities=22% Similarity=0.265 Sum_probs=154.2
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC------------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL------------------ 301 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~------------------ 301 (523)
..+.+|+++||++.+...+...+.. +..++++|||||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~-------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK-------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 4567899999999998887765542 334456999999999999999999999865
Q ss_pred ------CeeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 302 ------DYAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 302 ------~~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
+++.++++. ..+ ...++.+...+. ....+.||||||+|.|. ...++.|+..+..
T Consensus 81 ~~g~~~dv~el~aa~--~~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk~LE~ 143 (472)
T PRK14962 81 DEGTFMDVIELDAAS--NRG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLKTLEE 143 (472)
T ss_pred hcCCCCccEEEeCcc--cCC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHHHHHh
Confidence 233333321 112 223333333332 22345799999999873 2345667777777
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.+..+++|++|+.+..+++++.+|| .++.|.+|+.++...++...+..... .++
T Consensus 144 p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi-------------------------~i~ 197 (472)
T PRK14962 144 PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGI-------------------------EID 197 (472)
T ss_pred CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 7788999988888889999999999 79999999999999999988876443 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
+++++.|+..+.| |++.+++.++.++.... ..||.+++..++...
T Consensus 198 ~eal~~Ia~~s~G----dlR~aln~Le~l~~~~~-~~It~e~V~~~l~~~ 242 (472)
T PRK14962 198 REALSFIAKRASG----GLRDALTMLEQVWKFSE-GKITLETVHEALGLI 242 (472)
T ss_pred HHHHHHHHHHhCC----CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcCC
Confidence 9999999999888 77778877776543322 359999998887543
No 51
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.85 E-value=1.8e-18 Score=196.21 Aligned_cols=207 Identities=15% Similarity=0.210 Sum_probs=143.0
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcch-hcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccch-----
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG----- 315 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~----- 315 (523)
+..++|++.+...+...+....... .+..|..++||+||||||||++|++||..+ +.+++.++++.+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 3789999999999988887665432 234455679999999999999999999987 4578888887653210
Q ss_pred -hhHH---H-HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh--C------CCCCCEEEEEe
Q 009856 316 -AQAV---T-KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT--G------DQSRDIVLVLA 382 (523)
Q Consensus 316 -~~~~---~-~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~--~------~~~~~v~iI~t 382 (523)
+... + .-...+..+....+++||||||++.+ ++..+..|..++..- . .+.++.+||+|
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka---------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA---------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC---------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 0000 0 01123344445567899999999986 445555555555431 1 12456789999
Q ss_pred eCCC-------------------------CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhh
Q 009856 383 TNRP-------------------------GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437 (523)
Q Consensus 383 tn~~-------------------------~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~ 437 (523)
||.. ..+.|+|++|++.++.|.+++.++...|+..++.......
T Consensus 718 SN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl----------- 786 (857)
T PRK10865 718 SNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL----------- 786 (857)
T ss_pred CCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH-----------
Confidence 9973 1367899999999999999999999999999998753200
Q ss_pred hhhhhhhhhhhccCCHHHHHHHHHHC--CCCCHHHHHHHHH
Q 009856 438 LFKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMA 476 (523)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~ 476 (523)
...++.+ .+++++++.|+.+. .-|..|.|+.++.
T Consensus 787 ----~~~gi~l-~is~~al~~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 787 ----EERGYEI-HISDEALKLLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred ----HhCCCcC-cCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence 0111222 58999999998863 2344678888775
No 52
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=4.6e-20 Score=184.33 Aligned_cols=170 Identities=28% Similarity=0.358 Sum_probs=125.2
Q ss_pred CcccCHHHHHHHHHHHHHHhcch-------hcCCCCceEEEEcCCCCchHHHHHHHHHHhC-------CCeeEEecCCcc
Q 009856 247 DIILHPSLQRRIQHLAKATANTK-------IHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMTGGDVA 312 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~-------~~~~p~~~vLL~GppGtGKT~lA~ala~~l~-------~~~~~v~~~~~~ 312 (523)
+++|.+.+++.+..++....... ....|..+++|+||||||||++|+++|..+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999998876543311 1122455899999999999999999988762 368888876654
Q ss_pred c-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC--C--
Q 009856 313 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP--G-- 387 (523)
Q Consensus 313 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~--~-- 387 (523)
. +.+.....+..+|..+ .+++|||||++.+.+.+.... ........++..++....+++||++++.. +
T Consensus 103 ~~~~g~~~~~~~~~~~~a----~~gvL~iDEi~~L~~~~~~~~---~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA----MGGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENQRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred HhhcccchHHHHHHHHHc----cCcEEEEechhhhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 3 3334445566677554 368999999999864332222 33455566666666666788888887643 2
Q ss_pred -CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 388 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 388 -~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
.++|+|.+||+..|.||+|+.+++..|+.+++.+..
T Consensus 176 ~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 176 FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999998754
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=1.2e-19 Score=193.78 Aligned_cols=204 Identities=20% Similarity=0.251 Sum_probs=150.5
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------------
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---------------- 302 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---------------- 302 (523)
.+...+|++|||++.+.+.|.+.+.. +..++.+||+||+|||||++|+.||+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 35677899999999999988877653 3334568999999999999999999999761
Q ss_pred -------------eeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHH
Q 009856 303 -------------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNAL 366 (523)
Q Consensus 303 -------------~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~l 366 (523)
++.++.+. ......++++..... ...++.|+||||+|.|. ...+|.|
T Consensus 82 ~sC~~I~aG~hpDviEIdAas-----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNAL 144 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAAS-----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAM 144 (700)
T ss_pred HHHHHHHcCCCCcceEecccc-----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHH
Confidence 12222110 112334444444432 23456899999999872 3467889
Q ss_pred HHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhh
Q 009856 367 LFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 446 (523)
Q Consensus 367 l~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (523)
|..++..+.+++||++||.++.|.+.|+||| ..+.|..++.++....+..++.....
T Consensus 145 LKTLEEPP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi---------------------- 201 (700)
T PRK12323 145 LKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGI---------------------- 201 (700)
T ss_pred HHhhccCCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCC----------------------
Confidence 9999988899999999999999999999999 99999999999999999988876433
Q ss_pred hhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHH
Q 009856 447 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 497 (523)
Q Consensus 447 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~ 497 (523)
.++++.+..|+..+.| |+|+...++.. ..++.. +.||.+++..
T Consensus 202 ---~~d~eAL~~IA~~A~G-s~RdALsLLdQ--aia~~~--~~It~~~V~~ 244 (700)
T PRK12323 202 ---AHEVNALRLLAQAAQG-SMRDALSLTDQ--AIAYSA--GNVSEEAVRG 244 (700)
T ss_pred ---CCCHHHHHHHHHHcCC-CHHHHHHHHHH--HHHhcc--CCcCHHHHHH
Confidence 4678889999999988 66666666652 223332 3455554443
No 54
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-19 Score=175.96 Aligned_cols=252 Identities=20% Similarity=0.241 Sum_probs=174.5
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHh-cchhcCC-----CCceEEEEcCCCCchHHHHHHHHHHhC---------CCeeEEe
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATA-NTKIHQA-----PFRNMLFYGPPGTGKTMVAREIARKSG---------LDYAMMT 307 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~-~~~~~~~-----p~~~vLL~GppGtGKT~lA~ala~~l~---------~~~~~v~ 307 (523)
.-|+.+|....+++++...+.... .+..+.. ..+-+||+||||||||+|++++|+.+. ..++.++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 346778888999999887655432 2222221 234699999999999999999999983 3356777
Q ss_pred cCCccc-chhhHHHHHHHHHHHHHhc--CCc--eEEEEccchhhhhhccc---ccCcHHHHHHHHHHHHHhC--CCCCCE
Q 009856 308 GGDVAP-LGAQAVTKIHEIFDWAKKS--KKG--LLLFIDEADAFLCERNS---IHMSEAQRSALNALLFRTG--DQSRDI 377 (523)
Q Consensus 308 ~~~~~~-~~~~~~~~l~~~f~~a~~~--~~~--~vL~iDEid~l~~~~~~---~~~~~~~~~~l~~ll~~~~--~~~~~v 377 (523)
+..+.+ +.++....+..+|...... .++ .+++|||+++++..|.+ ...+.+.-+++|.+|..++ ....|+
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 766544 6677777777777664321 123 34779999999887743 3345566788999998877 466789
Q ss_pred EEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCC--chhhhhhhhhhhhhhhhccCCHHH
Q 009856 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSS--SLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
+|++|+|..+.+|.+|.+|-|.+.++++|+...+..|++..+............ ...|. ....+.+..
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~----------~~i~~~~~~ 368 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVK----------EFIKYQKAL 368 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhh----------HHhHhhHhH
Confidence 999999999999999999999999999999999999999998876431110000 00110 011122333
Q ss_pred HHHHHHH-CCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 456 IQEAARK-TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 456 l~~la~~-t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
...++.. +.|.|||-|++|=-.+.+.. . ....+|.+.|-.++-..+..+
T Consensus 369 ~~~~~~~~~~gLSGRtlrkLP~Laha~y-~-~~~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 369 RNILIELSTVGLSGRTLRKLPLLAHAEY-F-RTFTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred HHHHHHHhhcCCccchHhhhhHHHHHhc-c-CCCccChHHHHHHHHHHHHHH
Confidence 3344443 58999999999876544433 3 235788888888777766544
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=2.1e-19 Score=194.06 Aligned_cols=204 Identities=17% Similarity=0.243 Sum_probs=148.3
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------------
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---------------- 302 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---------------- 302 (523)
.+...+|++|||++.+.+.|...+.. +...+.+||+||+|||||++|+.||+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~-------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG-------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 35677899999999999988876542 2334457999999999999999999998652
Q ss_pred --------eeEEecCCcccchhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 303 --------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 303 --------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
++.++.+. ......+..++..+.. ..++.|+||||+|.|. ...++.||..++
T Consensus 82 I~~G~h~DviEIDAas-----~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtLE 144 (830)
T PRK07003 82 IDEGRFVDYVEMDAAS-----NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTLE 144 (830)
T ss_pred HhcCCCceEEEecccc-----cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHHH
Confidence 22222211 1123334444444322 2356899999999872 245777888888
Q ss_pred CCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccC
Q 009856 372 DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 451 (523)
Q Consensus 372 ~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (523)
..+.+++||++||.+..|.+.|+||| ..+.|..++.++....|...+..... .+
T Consensus 145 EPP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI-------------------------~i 198 (830)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERI-------------------------AF 198 (830)
T ss_pred hcCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCC-------------------------CC
Confidence 88889999999999999999999999 89999999999999999998876544 47
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHcCCCCccCHHHHHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQ-AAVYARPDCVLDSQLFREV 498 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~-~a~~~~~~~~it~e~~~~~ 498 (523)
+++.+..|+..+.| +++..++.+. ...+.. +.|+.+.+..+
T Consensus 199 d~eAL~lIA~~A~G----smRdALsLLdQAia~~~--~~It~~~V~~~ 240 (830)
T PRK07003 199 EPQALRLLARAAQG----SMRDALSLTDQAIAYSA--NEVTETAVSGM 240 (830)
T ss_pred CHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcc--CCcCHHHHHHH
Confidence 89999999999999 4454444432 233332 34555555443
No 56
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.83 E-value=1.2e-19 Score=175.20 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=144.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC------eeEEecCCccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------YAMMTGGDVAP 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~------~~~v~~~~~~~ 313 (523)
..+.+|++++|++.+...|...+.. ...+++|||||||||||+.|+++|+.+.++ +...+.++...
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 4567899999999999998876653 122369999999999999999999999653 23334444322
Q ss_pred --chhhHHHHHHHHHHHH-----HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC
Q 009856 314 --LGAQAVTKIHEIFDWA-----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 386 (523)
Q Consensus 314 --~~~~~~~~l~~~f~~a-----~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~ 386 (523)
+..+.......+.... ...+++.|++|||+|.|. ...+. .|...++..+..++||+.||+.
T Consensus 102 isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt---------sdaq~---aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT---------SDAQA---ALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh---------HHHHH---HHHHHHhccccceEEEEEcCCh
Confidence 1111111111111111 012344799999999863 24444 4444456678899999999999
Q ss_pred CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 387 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 387 ~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+.+.+.+.||| ..+.|++...+.....|+....+... +++++.++.|+..++|
T Consensus 170 srii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v-------------------------~~d~~al~~I~~~S~G- 222 (346)
T KOG0989|consen 170 SRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGV-------------------------DIDDDALKLIAKISDG- 222 (346)
T ss_pred hhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCC-------------------------CCCHHHHHHHHHHcCC-
Confidence 99999999999 78899999999999999988887665 5899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 009856 467 SGREIAKLMASVQAAVYA 484 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~ 484 (523)
|++..+..++.++..
T Consensus 223 ---dLR~Ait~Lqsls~~ 237 (346)
T KOG0989|consen 223 ---DLRRAITTLQSLSLL 237 (346)
T ss_pred ---cHHHHHHHHHHhhcc
Confidence 999999988888873
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=3.7e-19 Score=190.51 Aligned_cols=206 Identities=21% Similarity=0.258 Sum_probs=152.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|++|||++.+.+.|...+.. +..+..+||+||||||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~-------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER-------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 4567899999999998888776652 3344578999999999999999999998762
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.++++. . .....++.+...+ ....++.|+||||+|.|. ....+.++..+..
T Consensus 82 ~~g~hpDviEIDAAs--~---~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLKtLEE 144 (702)
T PRK14960 82 NEGRFIDLIEIDAAS--R---TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLKTLEE 144 (702)
T ss_pred hcCCCCceEEecccc--c---CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhc
Confidence 22222221 1 1233344444333 223456899999999872 2356777777777
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.+.++.||++|+.+..+.+.+++|| ..+.|.+++.++....+...+..... .++
T Consensus 145 PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI-------------------------~id 198 (702)
T PRK14960 145 PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQI-------------------------AAD 198 (702)
T ss_pred CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 7888899999999999999999999 89999999999999999999887554 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
++.+..|+..+.| +.|++..++. ++.+++ .+.||.+++..++.
T Consensus 199 ~eAL~~IA~~S~G-dLRdALnLLD--QaIayg--~g~IT~edV~~lLG 241 (702)
T PRK14960 199 QDAIWQIAESAQG-SLRDALSLTD--QAIAYG--QGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHhc
Confidence 9999999999988 5555555544 333443 46788888877544
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=3.1e-19 Score=191.13 Aligned_cols=212 Identities=17% Similarity=0.186 Sum_probs=155.4
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------------
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---------------- 302 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---------------- 302 (523)
.+.+.+|++|||++.+.+.|...+.. +..+..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 35678999999999999988877653 3334458999999999999999999998653
Q ss_pred --------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCC
Q 009856 303 --------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374 (523)
Q Consensus 303 --------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 374 (523)
++.++++. ..+.+....+...+.......++.|+||||+|.|. ...++.++..++.++
T Consensus 82 i~~g~~~d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk~LEepp 147 (509)
T PRK14958 82 IDEGRFPDLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLKTLEEPP 147 (509)
T ss_pred HhcCCCceEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHHHHhccC
Confidence 23333221 12222223332222222333456899999999873 245778888888888
Q ss_pred CCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 375 ~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
.+++||++|+.+..+.+.+++|| ..+.|.+++..+....+...+..... .++++
T Consensus 148 ~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi-------------------------~~~~~ 201 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENV-------------------------EFENA 201 (509)
T ss_pred CCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHH
Confidence 89999999999999999999999 89999999999999999988887544 47888
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 455 VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 455 ~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
.+..|+..+.| +.|++..++. +.++++ .+.||.+++..++...
T Consensus 202 al~~ia~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~lg~~ 244 (509)
T PRK14958 202 ALDLLARAANG-SVRDALSLLD--QSIAYG--NGKVLIADVKTMLGTI 244 (509)
T ss_pred HHHHHHHHcCC-cHHHHHHHHH--HHHhcC--CCCcCHHHHHHHHCCC
Confidence 99999999987 5555555554 334453 4678888888766443
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=6.7e-19 Score=182.31 Aligned_cols=211 Identities=22% Similarity=0.250 Sum_probs=149.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE--ec---------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM--TG--------- 308 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v--~~--------- 308 (523)
+.+.+|+++||++.+.+.+...+.. +..++.+||+||||||||++|+++|+.+++..... .|
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~-------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL-------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc-------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4567899999999999988766542 23344689999999999999999999986421100 00
Q ss_pred -----CCcccch---hhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 009856 309 -----GDVAPLG---AQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 377 (523)
Q Consensus 309 -----~~~~~~~---~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v 377 (523)
.++..+. ......+..+...+.. ...+.|+||||+|.+. ....+.++..+..++.++
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPQHI 150 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHHHHhcCCCCe
Confidence 0111110 0122334444443322 2235699999999862 235567777788788888
Q ss_pred EEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHH
Q 009856 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 457 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (523)
.||++|+.++.+.+++.+|| ..+.|++|+.++...++...+..... .++++.+.
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~-------------------------~i~~~al~ 204 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESI-------------------------DTDEYALK 204 (363)
T ss_pred EEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 89999988889999999999 89999999999999999998876543 47889999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 458 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 458 ~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.|+..+.| ++|++..++ +.++.. +.+.+|.+++.+++.
T Consensus 205 ~ia~~s~G-~~R~al~~l---~~~~~~-~~~~It~~~v~~~l~ 242 (363)
T PRK14961 205 LIAYHAHG-SMRDALNLL---EHAINL-GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHcCC-CHHHHHHHH---HHHHHh-cCCCCCHHHHHHHHC
Confidence 99999988 555544444 333322 356799998888664
No 60
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.3e-19 Score=185.35 Aligned_cols=243 Identities=17% Similarity=0.223 Sum_probs=181.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC----CeeEEecCCcccchh-hHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL----DYAMMTGGDVAPLGA-QAVT 320 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~----~~~~v~~~~~~~~~~-~~~~ 320 (523)
.+++..+..++...+ . ...+.....++||+||+|||||.|++++++++.. .+..++|+.+..-.- ....
T Consensus 408 ~d~i~~~s~kke~~n--~----~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk 481 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN--Q----ELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQK 481 (952)
T ss_pred Cceeecchhhhhhhh--h----hcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHH
Confidence 556666666665543 1 1112333468999999999999999999999854 355678877654322 2334
Q ss_pred HHHHHHHHHHhcCCceEEEEccchhhhhhccc-ccCcHHH----HHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhc
Q 009856 321 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNS-IHMSEAQ----RSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD 395 (523)
Q Consensus 321 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~-~~~~~~~----~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~ 395 (523)
.+..+|..+..+. |+||+||++|.+++..+. .+..... -..++.++.........+.||+|.+....++|-|.+
T Consensus 482 ~l~~vfse~~~~~-PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 482 FLNNVFSEALWYA-PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred HHHHHHHHHHhhC-CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcC
Confidence 5678888888777 689999999999883322 1212222 234455555556667778999999999999999987
Q ss_pred --cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHH
Q 009856 396 --RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 473 (523)
Q Consensus 396 --Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 473 (523)
+|+.++.++.|...+|..||..++.+... +....+++.++..|+||.+.|+..
T Consensus 561 ~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-------------------------~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTRRKEILTTIFSKNLS-------------------------DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred ccceEEEEecCCcchhHHHHHHHHHHHhhhh-------------------------hhhhHHHHHHHHhcCCccchhHHH
Confidence 89999999999999999999999987643 245556777999999999999999
Q ss_pred HHHHHHHHHHc----CCCCccCHHHHHHHHHHHHHhhhhcchhhccCCCCC
Q 009856 474 LMASVQAAVYA----RPDCVLDSQLFREVVEYKVEEHHQRIKLAAEGSQPT 520 (523)
Q Consensus 474 L~~~~~~a~~~----~~~~~it~e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 520 (523)
++..+-..++. .....+|.++|.+++++|+|...+++++.++++.-|
T Consensus 616 fVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w 666 (952)
T KOG0735|consen 616 FVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRW 666 (952)
T ss_pred HHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCc
Confidence 99766666652 223489999999999999999999999988875433
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=8e-19 Score=190.46 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=152.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|++|||++.+...|...+.. +..+..+||+||+|||||++|+.+|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 4568999999999999988776653 2233457999999999999999999998763
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 375 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 375 (523)
++.++++. ..+.+....+...+.......++.|+||||+|.|. ...++.||..++.++.
T Consensus 83 ~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLKtLEEPp~ 148 (647)
T PRK07994 83 EQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPE 148 (647)
T ss_pred HcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHHHHHcCCC
Confidence 12222211 12223333333333333334456899999999872 3568888888888899
Q ss_pred CEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 376 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 376 ~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
+++||++|+.+..+.+.++||| ..+.|.+++.++....|...+..... .+++..
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i-------------------------~~e~~a 202 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQI-------------------------PFEPRA 202 (647)
T ss_pred CeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 9999999999999999999999 99999999999999999998876543 478889
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+..|+..+.| ++|+...++. .++.. +.+.||.+++...+.
T Consensus 203 L~~Ia~~s~G-s~R~Al~lld---qaia~-~~~~it~~~v~~~lg 242 (647)
T PRK07994 203 LQLLARAADG-SMRDALSLTD---QAIAS-GNGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHHHHcCC-CHHHHHHHHH---HHHHh-cCCCcCHHHHHHHHc
Confidence 9999999988 5555555554 32222 234577777766553
No 62
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=7.3e-19 Score=185.67 Aligned_cols=206 Identities=22% Similarity=0.239 Sum_probs=153.9
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-----------------
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL----------------- 301 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~----------------- 301 (523)
.+.+.+|+++||++.+.+.+...+.. +..+.++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~ 78 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCIS 78 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHH
Confidence 34567999999999999888765442 344567999999999999999999997643
Q ss_pred -------CeeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 302 -------DYAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 302 -------~~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
+++.++++. .. ....++.+.+.+. ....+.|+||||+|.|. ...++.|+..++
T Consensus 79 i~~~~~~Dv~eidaas--~~---~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~LE 141 (491)
T PRK14964 79 IKNSNHPDVIEIDAAS--NT---SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTLE 141 (491)
T ss_pred HhccCCCCEEEEeccc--CC---CHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHHh
Confidence 233333321 11 2333444444432 23456799999999862 246778888888
Q ss_pred CCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccC
Q 009856 372 DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 451 (523)
Q Consensus 372 ~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (523)
.++..++||++|+.+..+.+.+++|| ..+.|.+++.++....+...+..... .+
T Consensus 142 ePp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi-------------------------~i 195 (491)
T PRK14964 142 EPAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENI-------------------------EH 195 (491)
T ss_pred CCCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCC-------------------------CC
Confidence 88889999999999999999999999 88999999999999999998887554 48
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+++.+..|+..+.| +.|++..++. +.+.+.. ..||.+++...+
T Consensus 196 ~~eAL~lIa~~s~G-slR~alslLd--qli~y~~--~~It~e~V~~ll 238 (491)
T PRK14964 196 DEESLKLIAENSSG-SMRNALFLLE--QAAIYSN--NKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcC--CCCCHHHHHHHH
Confidence 89999999999987 5555555444 2233433 478999888764
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=9.5e-19 Score=192.43 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=140.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCee-E-EecC--------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-M-MTGG-------- 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~-~-v~~~-------- 309 (523)
+.+.+|++|||++.+...|..++.. +..+..+||+||||||||++|+++|+.+++... . ..|.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 4567899999999999998776542 233345799999999999999999999976411 0 0000
Q ss_pred ------Ccc------cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 009856 310 ------DVA------PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 377 (523)
Q Consensus 310 ------~~~------~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v 377 (523)
++. ..+.+....+...+.......++.|+||||+|.|. ...++.||..++.++.++
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEEPP~~v 150 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEEPPEHV 150 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhccCCCe
Confidence 011 11222233333333322223456799999999972 457788888888888999
Q ss_pred EEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHH
Q 009856 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 457 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (523)
+||++|+.+..|.+.|++|| .++.|.+++.++....|.+.+..... .++++.+.
T Consensus 151 rFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI-------------------------~~edeAL~ 204 (944)
T PRK14949 151 KFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQL-------------------------PFEAEALT 204 (944)
T ss_pred EEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999999 89999999999999999988876432 47889999
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q 009856 458 EAARKTEGFSGREIAKLMA 476 (523)
Q Consensus 458 ~la~~t~G~sgrdI~~L~~ 476 (523)
.|+..+.| ++|++-.++.
T Consensus 205 lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 205 LLAKAANG-SMRDALSLTD 222 (944)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 99999988 5555555554
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=6.7e-19 Score=179.39 Aligned_cols=206 Identities=18% Similarity=0.230 Sum_probs=148.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-----CeeEEecCCcccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPL 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-----~~~~v~~~~~~~~ 314 (523)
..+.+|++++|++++...|..++.. ...+++|||||||||||++|+++|+.+.. .++.++.++...
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~- 77 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG- 77 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc-
Confidence 3567889999999998888766441 22236999999999999999999999732 345555554322
Q ss_pred hhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcH
Q 009856 315 GAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~ 391 (523)
.+........|.... ....+.|+||||+|.+. ...+..|...+ +..+..+.||++||....+.+
T Consensus 78 -~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt---------~~aq~aL~~~l---E~~~~~t~~il~~n~~~~i~~ 144 (319)
T PLN03025 78 -IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT---------SGAQQALRRTM---EIYSNTTRFALACNTSSKIIE 144 (319)
T ss_pred -HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC---------HHHHHHHHHHH---hcccCCceEEEEeCCccccch
Confidence 122222222221111 01235799999999973 34455555444 344556778999999999999
Q ss_pred HHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHH
Q 009856 392 AITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 471 (523)
Q Consensus 392 al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI 471 (523)
++.+|+ .++.|++|+.++....+...+.+... .++++.+..|+..+.| |+
T Consensus 145 ~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi-------------------------~i~~~~l~~i~~~~~g----Dl 194 (319)
T PLN03025 145 PIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKV-------------------------PYVPEGLEAIIFTADG----DM 194 (319)
T ss_pred hHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CH
Confidence 999999 79999999999999999998877554 4789999999999988 99
Q ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 472 AKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 472 ~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+.+++.++.+... ...+|.+++.+++
T Consensus 195 R~aln~Lq~~~~~--~~~i~~~~v~~~~ 220 (319)
T PLN03025 195 RQALNNLQATHSG--FGFVNQENVFKVC 220 (319)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHc
Confidence 9999999865543 3468877776643
No 65
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.82 E-value=2.8e-18 Score=193.64 Aligned_cols=230 Identities=19% Similarity=0.228 Sum_probs=150.4
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----------ch
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------~~ 315 (523)
++++|++.+++.+...+....... .....+++|+||||||||++|++||..++.+|+.++++.+.. +.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~--~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~ 397 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG--KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYV 397 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCcee
Confidence 458999999999987655332211 122236999999999999999999999999999987654321 22
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-----h-----C--CCCCCEEEEEee
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----T-----G--DQSRDIVLVLAT 383 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----~-----~--~~~~~v~iI~tt 383 (523)
+...+.+...|..+.... .||||||||++.+..... ....|..+++. + + .+..+++||+||
T Consensus 398 g~~~g~i~~~l~~~~~~~--~villDEidk~~~~~~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt 470 (775)
T TIGR00763 398 GAMPGRIIQGLKKAKTKN--PLFLLDEIDKIGSSFRGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA 470 (775)
T ss_pred CCCCchHHHHHHHhCcCC--CEEEEechhhcCCccCCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence 233455566676654333 389999999997542211 12233333321 0 0 123578999999
Q ss_pred CCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH-H
Q 009856 384 NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR-K 462 (523)
Q Consensus 384 n~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~-~ 462 (523)
|..+.++++|++|| .+|.|+.|+.+++..|++.++........... ... -.++++.+..|+. +
T Consensus 471 N~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~------------~~~---~~~~~~~l~~i~~~~ 534 (775)
T TIGR00763 471 NSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLK------------PDE---LKITDEALLLLIKYY 534 (775)
T ss_pred CCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCC------------cce---EEECHHHHHHHHHhc
Confidence 99999999999999 68999999999999999988743221000000 000 1478889998876 4
Q ss_pred CCCCCHHHHHHHHHHHHHHH-H---c-CCC-------CccCHHHHHHHHH
Q 009856 463 TEGFSGREIAKLMASVQAAV-Y---A-RPD-------CVLDSQLFREVVE 500 (523)
Q Consensus 463 t~G~sgrdI~~L~~~~~~a~-~---~-~~~-------~~it~e~~~~~l~ 500 (523)
+..+..|+|+..+..+...+ + . ... -.++.+++...+.
T Consensus 535 ~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 535 TREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred ChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 55666778877764333222 1 1 111 3677777666554
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.4e-18 Score=185.62 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=155.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|++|+|++.+...|...+.. +..+..+|||||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 4567899999999999988877663 2333457999999999999999999988531
Q ss_pred ------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 009856 303 ------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 376 (523)
Q Consensus 303 ------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 376 (523)
++.++++. ..+.+....+...+........+.||||||+|.+. ...++.++..+...+.+
T Consensus 81 ~~~h~dv~el~~~~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep~~~ 146 (504)
T PRK14963 81 RGAHPDVLEIDAAS--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEPPEH 146 (504)
T ss_pred cCCCCceEEecccc--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhCCCC
Confidence 22333221 12222222232222221223356799999998752 34577778888777788
Q ss_pred EEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHH
Q 009856 377 IVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 456 (523)
Q Consensus 377 v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (523)
+++|++++.+..+.+.+.+|| ..+.|.+|+.++....+...+..... .++++.+
T Consensus 147 t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi-------------------------~i~~~Al 200 (504)
T PRK14963 147 VIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGR-------------------------EAEPEAL 200 (504)
T ss_pred EEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHH
Confidence 899999999999999999999 78999999999999999999887654 4788999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 457 QEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 457 ~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
..|+..+.| +++.+++.++.++.. ...||.+++..++...
T Consensus 201 ~~ia~~s~G----dlR~aln~Lekl~~~--~~~It~~~V~~~l~~~ 240 (504)
T PRK14963 201 QLVARLADG----AMRDAESLLERLLAL--GTPVTRKQVEEALGLP 240 (504)
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHhc--CCCCCHHHHHHHHCCC
Confidence 999999998 777777777766543 3579999888875443
No 67
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=3e-19 Score=157.43 Aligned_cols=127 Identities=35% Similarity=0.592 Sum_probs=106.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc-cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCc
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 356 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~ 356 (523)
|||+||||||||++|+.+|+.++.+++.++++.+. ...++....+..+|..+.....++||||||+|.+.+.. ....+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 69999999999999999999999999999999886 46678888999999998766546999999999999887 33345
Q ss_pred HHHHHHHHHHHHHhCC---CCCCEEEEEeeCCCCCCcHHHh-ccccceEeecC
Q 009856 357 EAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLDSAIT-DRIDEVIEFPL 405 (523)
Q Consensus 357 ~~~~~~l~~ll~~~~~---~~~~v~iI~ttn~~~~l~~al~-~Rf~~~i~~~~ 405 (523)
......+..++..++. ...+++||+|||.++.+++++. +||+..|+||.
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 5556666666666553 3357999999999999999999 99999999874
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=99.81 E-value=1.5e-18 Score=186.33 Aligned_cols=209 Identities=21% Similarity=0.291 Sum_probs=154.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHH
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV 319 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~ 319 (523)
..+.+|++++|++.+...+..++.... .+.|++++|||||||||||++|+++|+.++.+++.+++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~----~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~----- 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWL----KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA----- 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-----
Confidence 345678999999999999988876544 24456789999999999999999999999999999998775421
Q ss_pred HHHHHHHHHHHhc-----CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcH-HH
Q 009856 320 TKIHEIFDWAKKS-----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS-AI 393 (523)
Q Consensus 320 ~~l~~~f~~a~~~-----~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~-al 393 (523)
..+..+...+... .++.||||||+|.+....+ ...+..++..+. ..+..||+++|.+..+.+ .+
T Consensus 79 ~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 79 DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 1122222222111 2467999999999854211 122333333333 233457888898888887 77
Q ss_pred hccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHH
Q 009856 394 TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 473 (523)
Q Consensus 394 ~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 473 (523)
.+|+ ..|.|++|+..++..++...+..... .++++.+..|+..+.| |++.
T Consensus 149 rsr~-~~I~f~~~~~~~i~~~L~~i~~~egi-------------------------~i~~eaL~~Ia~~s~G----DlR~ 198 (482)
T PRK04195 149 RNAC-LMIEFKRLSTRSIVPVLKRICRKEGI-------------------------ECDDEALKEIAERSGG----DLRS 198 (482)
T ss_pred hccc-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CHHH
Confidence 7787 89999999999999999999876544 4788999999999988 9999
Q ss_pred HHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 474 LMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 474 L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+++.++..+ .+...++.+++..++
T Consensus 199 ain~Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 199 AINDLQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHh--cCCCCCcHHHHHHhh
Confidence 999888844 344578888876554
No 69
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=2.2e-18 Score=184.55 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=152.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|+++||++.+...+...+.. +..+..+||+||||||||++|+.+|+.+++.
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4567899999999999888766542 2334458999999999999999999988641
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 375 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 375 (523)
++.+++. ...+.+....+...+........+.|+||||+|.|. ....+.|+..++..+.
T Consensus 83 ~~~~~~dlieidaa--s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK~LEepp~ 148 (546)
T PRK14957 83 NNNSFIDLIEIDAA--SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLKTLEEPPE 148 (546)
T ss_pred hcCCCCceEEeecc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHHHHhcCCC
Confidence 2222221 112223333333333322233456799999999862 3466777777887888
Q ss_pred CEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 376 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 376 ~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
.++||++|+.+..+.+.+++|| .++.|.+++.++....+...+..... .+++..
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi-------------------------~~e~~A 202 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENI-------------------------NSDEQS 202 (546)
T ss_pred CceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 8899998888888998999999 99999999999999999988876543 478899
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
+..|+..+.| +++.+++.++.++...+ ..||.+++.+++..
T Consensus 203 l~~Ia~~s~G----dlR~alnlLek~i~~~~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 203 LEYIAYHAKG----SLRDALSLLDQAISFCG-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHhcc-CCCCHHHHHHHHcc
Confidence 9999999988 66666665554443222 67898888875443
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=2.2e-18 Score=183.39 Aligned_cols=217 Identities=23% Similarity=0.264 Sum_probs=156.8
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE------Eec----
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM------MTG---- 308 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~------v~~---- 308 (523)
.+.+.+|+++||++.+...+...+.. +..+.++||+||||||||++|+++|+.+++..-. ..|
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~ 86 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT 86 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh
Confidence 35678999999999999988765442 3445679999999999999999999998653110 000
Q ss_pred ----------CCcccc---hhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 309 ----------GDVAPL---GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 309 ----------~~~~~~---~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
.++..+ .......+..++..+.. ...+.|+||||+|.|. ...++.|+..++.
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLLk~LEe 154 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALLKTLEE 154 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHHHHHhh
Confidence 011111 11234455566655542 2346799999999862 2456777777777
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.+..++||++|+.++.+.+.+.+|| ..+.|.+++.++...++...+..... .++
T Consensus 155 pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi-------------------------~ie 208 (507)
T PRK06645 155 PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENL-------------------------KTD 208 (507)
T ss_pred cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8888999999998899999999999 78999999999999999999987544 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcC-CCCccCHHHHHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYAR-PDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~-~~~~it~e~~~~~l~~~~ 503 (523)
++.+..|+..+.| +.|++..++.. ++.+.. .+..||.+++...+....
T Consensus 209 ~eAL~~Ia~~s~G-slR~al~~Ldk--ai~~~~~~~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 209 IEALRIIAYKSEG-SARDAVSILDQ--AASMSAKSDNIISPQVINQMLGLVD 257 (507)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH--HHHhhccCCCCcCHHHHHHHHCCCC
Confidence 8999999999988 55555555542 223433 344788888887765443
No 71
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=2.5e-19 Score=185.51 Aligned_cols=221 Identities=26% Similarity=0.351 Sum_probs=173.2
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-- 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-- 313 (523)
....++|+++||.+..+..+...+...+.+..+ |||+|.+||||..+|++|++.+ +.||+.+||+.+..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdst------VLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDST------VLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCc------EEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 456789999999999999888888877665554 9999999999999999999987 57999999999987
Q ss_pred chhhHHHHHHHHHHHHHhcC--------CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-----hCC---CCCCE
Q 009856 314 LGAQAVTKIHEIFDWAKKSK--------KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----TGD---QSRDI 377 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~--------~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----~~~---~~~~v 377 (523)
+.++.+++..+.|+.|.... .++-||||||..| +...+..|..+|+. ++. .+-++
T Consensus 312 lESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------pl~LQaKLLRVLQEkei~rvG~t~~~~vDV 382 (560)
T COG3829 312 LESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------PLPLQAKLLRVLQEKEIERVGGTKPIPVDV 382 (560)
T ss_pred HHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------CHHHHHHHHHHHhhceEEecCCCCceeeEE
Confidence 77888999999999998752 2456999999765 77889999999986 232 33489
Q ss_pred EEEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhh
Q 009856 378 VLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 446 (523)
Q Consensus 378 ~iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (523)
.||+|||.. ..+...|.-|+ .++.+..|+..+|.+ +..+|+.++.. ..+.
T Consensus 383 RIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~------------------~~~~ 443 (560)
T COG3829 383 RIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSR------------------RYGR 443 (560)
T ss_pred EEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHH------------------HcCC
Confidence 999999973 34556666677 788888898877765 77777777655 3333
Q ss_pred hhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-cCCCCccCHHHHH
Q 009856 447 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY-ARPDCVLDSQLFR 496 (523)
Q Consensus 447 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~-~~~~~~it~e~~~ 496 (523)
.+..++++.+..|.++. |+| +++.|-|.++++++ ...+..|+.+++-
T Consensus 444 ~v~~ls~~a~~~L~~y~--WPG-NVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 444 NVKGLSPDALALLLRYD--WPG-NVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred CcccCCHHHHHHHHhCC--CCc-hHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 44568999999987663 444 99999999999996 4444566666554
No 72
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.1e-18 Score=185.56 Aligned_cols=208 Identities=21% Similarity=0.267 Sum_probs=154.5
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++|||++.++..|...+.. +.-+.++||+||||||||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 4567899999999998888876652 2223579999999999999999999998653
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 375 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 375 (523)
++.+++.. ..+.+....+...+..........||||||+|.|. ...++.|+..++....
T Consensus 83 ~~g~hpDv~eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 83 TQGMHVDVVEIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEPPA 148 (624)
T ss_pred hcCCCCceEEEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhccCC
Confidence 22332211 12233444454444444444456899999999872 3346777777777778
Q ss_pred CEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 376 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 376 ~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
+++||++||.+..+.+.|++|| .++.|++++.++...+|...+..... .++++.
T Consensus 149 ~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi-------------------------~id~ea 202 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGV-------------------------DYDPAA 202 (624)
T ss_pred CEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 8999999999999999999999 78999999999999999988776543 478999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+..|+..+.| +++.+++.+..+++. +...||.+++..++
T Consensus 203 l~lIA~~s~G----dlR~Al~lLeqll~~-g~~~It~d~V~~~l 241 (624)
T PRK14959 203 VRLIARRAAG----SVRDSMSLLGQVLAL-GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHh-cCCCcCHHHHHHHh
Confidence 9999999988 666666665544433 44578888876654
No 73
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.80 E-value=4.1e-17 Score=185.81 Aligned_cols=206 Identities=17% Similarity=0.219 Sum_probs=143.4
Q ss_pred CCcccCHHHHHHHHHHHHHHhcc-hhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------ch
Q 009856 246 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~ 315 (523)
..|+|++.+...+...+...+.. ..+..|..++||+||||||||++|++||..+ +.+++.++++.+.. +.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 67999999999999888776543 2334566789999999999999999999987 56788888876432 00
Q ss_pred hhHHH---H-HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEee
Q 009856 316 AQAVT---K-IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLAT 383 (523)
Q Consensus 316 ~~~~~---~-l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~tt 383 (523)
+...+ . ..+.+..+....+++|||||||+++ ++..+..|..+++.-. .+.++++||+||
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka---------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA---------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred CCCCCccCcccccHHHHHHHcCCCcEEEEeccccC---------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 00000 0 0123334445567899999999986 4455555555553311 124678899999
Q ss_pred CCCC-------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhh
Q 009856 384 NRPG-------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHL 438 (523)
Q Consensus 384 n~~~-------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~ 438 (523)
|... .+.|.|+.|++.++.|.+++.++...|+..++......
T Consensus 716 n~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~------------- 782 (852)
T TIGR03346 716 NLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR------------- 782 (852)
T ss_pred CcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH-------------
Confidence 9732 25688999999999999999999999999998754320
Q ss_pred hhhhhhhhhhccCCHHHHHHHHHHCC--CCCHHHHHHHHH
Q 009856 439 FKKQQQKITIKDLSDNVIQEAARKTE--GFSGREIAKLMA 476 (523)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~la~~t~--G~sgrdI~~L~~ 476 (523)
+. ..++. ..+++++++.|+.... .+..|.|+.++.
T Consensus 783 l~--~~~~~-l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 783 LA--ERKIT-LELSDAALDFLAEAGYDPVYGARPLKRAIQ 819 (852)
T ss_pred HH--HCCCe-ecCCHHHHHHHHHhCCCCCCCchhHHHHHH
Confidence 00 11111 2589999999998732 456677777764
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.4e-18 Score=186.39 Aligned_cols=206 Identities=19% Similarity=0.268 Sum_probs=151.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|++|||++.+...|..++.. +..+..+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 4567899999999999988876653 2333457999999999999999999998652
Q ss_pred ------------eeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHH
Q 009856 303 ------------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL 367 (523)
Q Consensus 303 ------------~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll 367 (523)
|+.++++. ......++.+...+. ...++.|+||||+|.|. ...++.|+
T Consensus 83 ~C~~i~~g~h~D~~eldaas-----~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~NaLL 145 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAAS-----NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNAML 145 (618)
T ss_pred HHHHHHcCCCCceeecCccc-----ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 11121110 112233444444432 22346799999999972 34577888
Q ss_pred HHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhh
Q 009856 368 FRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 447 (523)
Q Consensus 368 ~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (523)
..++..+..++||++|+.+..+.+.+++|| .++.|..++.++....+...+.....
T Consensus 146 KtLEEPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi----------------------- 201 (618)
T PRK14951 146 KTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENV----------------------- 201 (618)
T ss_pred HhcccCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCC-----------------------
Confidence 888888889999999999999999999999 99999999999999999988876544
Q ss_pred hccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 448 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 448 ~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.++++.+..|+..+.| +.|++..++. +..+++ .+.||.+++..++.
T Consensus 202 --~ie~~AL~~La~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~Lg 247 (618)
T PRK14951 202 --PAEPQALRLLARAARG-SMRDALSLTD--QAIAFG--SGQLQEAAVRQMLG 247 (618)
T ss_pred --CCCHHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHc
Confidence 4788999999999988 5555555443 333443 45788887776653
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.80 E-value=2.1e-17 Score=186.97 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=139.3
Q ss_pred CCcccCHHHHHHHHHHHHHHhcch-hcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcc---------
Q 009856 246 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA--------- 312 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~--------- 312 (523)
..|+|++.+...+...+.....+. .+..|...+||+||||||||++|++||..+ +..++.++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 789999999999988877655432 334555679999999999999999999998 4467777766532
Q ss_pred -----cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEE
Q 009856 313 -----PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVL 379 (523)
Q Consensus 313 -----~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~i 379 (523)
+.|.... +.+..+.+..+++||+|||++++ ++.....|..+++.-. -+..+++|
T Consensus 646 g~~~gyvg~~~~----g~L~~~v~~~p~svvllDEieka---------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~ii 712 (852)
T TIGR03345 646 GSPPGYVGYGEG----GVLTEAVRRKPYSVVLLDEVEKA---------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVI 712 (852)
T ss_pred CCCCCccccccc----chHHHHHHhCCCcEEEEechhhc---------CHHHHHHHHHHhhcceeecCCCcEEeccccEE
Confidence 1121111 22333335577899999999975 3344444444443211 12368899
Q ss_pred EEeeCCCC-----------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCC
Q 009856 380 VLATNRPG-----------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDS 430 (523)
Q Consensus 380 I~ttn~~~-----------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~ 430 (523)
|+|||... .+.|+|++|++ +|.|.+++.++...|+...+.......
T Consensus 713 I~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl---- 787 (852)
T TIGR03345 713 LLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRL---- 787 (852)
T ss_pred EEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHH----
Confidence 99998521 26799999996 899999999999999999987653200
Q ss_pred CchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC--CCHHHHHHHHH
Q 009856 431 SSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG--FSGREIAKLMA 476 (523)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G--~sgrdI~~L~~ 476 (523)
.. ..++. -.+++++++.|+..+.+ |-.|.|+.++.
T Consensus 788 ---------~~-~~gi~-l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 788 ---------KE-NHGAE-LVYSEALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred ---------HH-hcCce-EEECHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 00 00121 14899999999998643 55777777774
No 76
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3.6e-18 Score=184.48 Aligned_cols=210 Identities=17% Similarity=0.194 Sum_probs=151.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|++|||++.+.+.|...+.. +..++.+||+||+|||||++|+++|+.+++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 4567899999999999998877652 2333448999999999999999999988642
Q ss_pred ---------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 009856 303 ---------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 373 (523)
Q Consensus 303 ---------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 373 (523)
++.++++. ..+.+....+............+.|+||||+|.|. ...++.|+..++..
T Consensus 80 ~~~~~~~~dvieidaas--~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NALLK~LEEp 145 (584)
T PRK14952 80 APNGPGSIDVVELDAAS--HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNALLKIVEEP 145 (584)
T ss_pred hcccCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHHHHHHhcC
Confidence 11111111 01222223333222223333457899999999872 24677888888888
Q ss_pred CCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCH
Q 009856 374 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 453 (523)
Q Consensus 374 ~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (523)
+.+++||++|+.+..+.+.|++|+ .++.|..++.++....+..++..... .+++
T Consensus 146 p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi-------------------------~i~~ 199 (584)
T PRK14952 146 PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGV-------------------------VVDD 199 (584)
T ss_pred CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 899999999999999999999998 89999999999999999988876543 4788
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 454 NVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 454 ~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+.+..|+..+.| +++.+++.++..+...+...||.+++..++.
T Consensus 200 ~al~~Ia~~s~G----dlR~aln~Ldql~~~~~~~~It~~~v~~llg 242 (584)
T PRK14952 200 AVYPLVIRAGGG----SPRDTLSVLDQLLAGAADTHVTYQRALGLLG 242 (584)
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHhccCCCCcCHHHHHHHHC
Confidence 899999999877 4455554444444333356788777776643
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=2.7e-18 Score=185.54 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=154.9
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE--EecC-------
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTGG------- 309 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~--v~~~------- 309 (523)
.+.+.+|++|||++.+.+.|...+.. +..+..+||+||+|||||++|+++|+.++++... ..|+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 35677899999999999988877653 3444679999999999999999999998653110 0000
Q ss_pred -------Ccccc---hhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 009856 310 -------DVAPL---GAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 376 (523)
Q Consensus 310 -------~~~~~---~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 376 (523)
++..+ .......++.++..+. ...++.||||||+|.|. ...++.|+..+...+.+
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEH 149 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhCCCC
Confidence 11111 1112334555554332 23456799999999862 24567788888877888
Q ss_pred EEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHH
Q 009856 377 IVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 456 (523)
Q Consensus 377 v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (523)
++||++|+.+..+.+.+++|| ..+.|+.++.++....+...+..... .++++.+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi-------------------------~id~eAL 203 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKI-------------------------AYEPPAL 203 (709)
T ss_pred cEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCC-------------------------CcCHHHH
Confidence 999999999999999999999 88999999999999999999887654 4788999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 457 QEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 457 ~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
..|+..+.| +.|++..++. +..+++ .+.|+.+++..++...
T Consensus 204 ~~Ia~~A~G-slRdAlnLLD--qaia~g--~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 204 QLLGRAAAG-SMRDALSLLD--QAIALG--SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHhCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHccc
Confidence 999999988 5555555554 233343 3568888877765543
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.80 E-value=5.5e-18 Score=178.59 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=149.6
Q ss_pred ccccCCCcccCHHHHHH---HHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhh
Q 009856 241 AIKNNGDIILHPSLQRR---IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ 317 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~---l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~ 317 (523)
.+.+|+++||++.+... +..++. ...+.+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~--------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~------ 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE--------AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS------ 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc------
Confidence 34678999999998665 555543 1223479999999999999999999999999999987642
Q ss_pred HHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee--CCCCCCcHH
Q 009856 318 AVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSA 392 (523)
Q Consensus 318 ~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt--n~~~~l~~a 392 (523)
....+..++..+.. ...+.||||||+|.+. ...+..|..++ . .+.+++|++| |....++++
T Consensus 73 ~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---------~~~q~~LL~~l---e--~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 73 GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN---------KAQQDALLPHV---E--DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC---------HHHHHHHHHHh---h--cCcEEEEEeCCCChhhhccHH
Confidence 12234444444422 2256899999999873 23444444444 2 2456677665 445589999
Q ss_pred HhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHH
Q 009856 393 ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 472 (523)
Q Consensus 393 l~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 472 (523)
+++|| .++.|++|+.++...++...+..... . + ..++++.+..|+..+.| |++
T Consensus 139 L~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~---~-----------------~--i~i~~~al~~l~~~s~G----d~R 191 (413)
T PRK13342 139 LLSRA-QVFELKPLSEEDIEQLLKRALEDKER---G-----------------L--VELDDEALDALARLANG----DAR 191 (413)
T ss_pred Hhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc---C-----------------C--CCCCHHHHHHHHHhCCC----CHH
Confidence 99999 88999999999999999998765321 0 0 13788899999999877 778
Q ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 473 KLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 473 ~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
.+++.++.++.. ...||.+++..++...
T Consensus 192 ~aln~Le~~~~~--~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 192 RALNLLELAALG--VDSITLELLEEALQKR 219 (413)
T ss_pred HHHHHHHHHHHc--cCCCCHHHHHHHHhhh
Confidence 888877776655 4679999999988764
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.79 E-value=9.4e-18 Score=170.90 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=148.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHH
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV 319 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~ 319 (523)
..+.+|++++|++.+...+...+.. +..+..+||+||||+|||++|+++++.++.+++.+++++ .. .+..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~--~~~i 84 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR--IDFV 84 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc--HHHH
Confidence 4567899999999999988877651 233345667999999999999999999999999998876 22 1111
Q ss_pred -HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhcccc
Q 009856 320 -TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRID 398 (523)
Q Consensus 320 -~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~ 398 (523)
..+............+.||||||+|.+.. ...+..|..++ ...+.++.||+|||.+..+.+++.+||
T Consensus 85 ~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~L~~~l---e~~~~~~~~Ilt~n~~~~l~~~l~sR~- 152 (316)
T PHA02544 85 RNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRHLRSFM---EAYSKNCSFIITANNKNGIIEPLRSRC- 152 (316)
T ss_pred HHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHHHHHHH---HhcCCCceEEEEcCChhhchHHHHhhc-
Confidence 11222211111123568999999998621 12334444444 334567789999999999999999999
Q ss_pred ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 009856 399 EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASV 478 (523)
Q Consensus 399 ~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~ 478 (523)
..+.|+.|+.+++..++..++..... ........++++.+..++....| |++.+++.+
T Consensus 153 ~~i~~~~p~~~~~~~il~~~~~~~~~------------------~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQMIVRCKG------------------ILEAEGVEVDMKVLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHH------------------HHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHH
Confidence 68999999999999988877665421 00000114688899999998877 888888877
Q ss_pred HHHHHcCCCCccCHHHHHHHH
Q 009856 479 QAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 479 ~~a~~~~~~~~it~e~~~~~l 499 (523)
+..+. ...++.+++....
T Consensus 211 ~~~~~---~~~i~~~~l~~~~ 228 (316)
T PHA02544 211 QRYAS---TGKIDAGILSEVT 228 (316)
T ss_pred HHHHc---cCCCCHHHHHHhh
Confidence 76553 2457766655543
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=5.4e-18 Score=181.57 Aligned_cols=205 Identities=23% Similarity=0.264 Sum_probs=148.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++++|++.+...+...+.. +..++++||+||||||||++|+++|+.+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~-------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN-------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4567899999999999888765532 3344679999999999999999999998531
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.++++. .. ..+.++.+...+. ...++.|++|||+|.|. ....+.|+..++.
T Consensus 83 ~~~~h~DiieIdaas--~i---gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLLKtLEE 145 (605)
T PRK05896 83 NTNQSVDIVELDAAS--NN---GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALLKTLEE 145 (605)
T ss_pred HcCCCCceEEecccc--cc---CHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHHHHHHh
Confidence 22222211 11 2233444443332 22346799999999862 2345677777787
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
++..+++|++|+.+..+.+.+++|| .++.|++|+..+....+...+..... .++
T Consensus 146 Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi-------------------------~Is 199 (605)
T PRK05896 146 PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKI-------------------------KIE 199 (605)
T ss_pred CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8888999999999999999999999 78999999999999999998876543 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++.+..++..+.| +++++..++..+ +.+. + ..||.+++..++
T Consensus 200 ~eal~~La~lS~G-dlR~AlnlLekL--~~y~-~-~~It~e~V~ell 241 (605)
T PRK05896 200 DNAIDKIADLADG-SLRDGLSILDQL--STFK-N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHH--Hhhc-C-CCCCHHHHHHHh
Confidence 8899999999988 555555555432 2333 2 338888877753
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=6e-18 Score=183.54 Aligned_cols=205 Identities=24% Similarity=0.303 Sum_probs=152.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|++++|++.+.+.+...+.. +..++.+||+||+|||||++|+.+|+.++++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 5677899999999999988877653 3344568999999999999999999998542
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.++++ .......++.+.+.+. ....+.|+||||+|.|. ...++.|+..++.
T Consensus 83 ~~g~~~dv~eidaa-----s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLKtLEe 145 (559)
T PRK05563 83 TNGSLMDVIEIDAA-----SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLKTLEE 145 (559)
T ss_pred hcCCCCCeEEeecc-----ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHhcC
Confidence 2222221 1122344445544433 23456899999999872 3467788888888
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
++.+++||++|+.++.+.+.+++|| ..+.|++|+..+....+...+..... .++
T Consensus 146 pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi-------------------------~i~ 199 (559)
T PRK05563 146 PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGI-------------------------EYE 199 (559)
T ss_pred CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8889999999999999999999999 78999999999999999998876554 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++.+..|+..+.| +.|++..++.. ...+. ...||.+++..++
T Consensus 200 ~~al~~ia~~s~G-~~R~al~~Ldq--~~~~~--~~~It~~~V~~vl 241 (559)
T PRK05563 200 DEALRLIARAAEG-GMRDALSILDQ--AISFG--DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH--HHHhc--cCCCCHHHHHHHh
Confidence 8899999999887 55555555442 23343 4568888776654
No 82
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=3.9e-18 Score=183.73 Aligned_cols=211 Identities=21% Similarity=0.279 Sum_probs=152.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE--EecC--------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTGG-------- 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~--v~~~-------- 309 (523)
+.+.+|+++||++.+.+.+...+.. +..++.+||+||||||||++|+.+|+.+++.... -.|+
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4567899999999999988776652 3334458999999999999999999998653110 0010
Q ss_pred ------Ccccc---hhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 009856 310 ------DVAPL---GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 377 (523)
Q Consensus 310 ------~~~~~---~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v 377 (523)
++..+ .......++.+...+.. ..++.|+||||+|.|. ....+.|+..+...+.++
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHHhCCCCCE
Confidence 11101 01223344555544432 2345799999999862 245778888888888899
Q ss_pred EEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHH
Q 009856 378 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 457 (523)
Q Consensus 378 ~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (523)
+||++|+.+..+.+.+++|| ..+.|..++.++....+...+..... .+++..+.
T Consensus 151 ~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi-------------------------~~~~~al~ 204 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENI-------------------------PFDATALQ 204 (527)
T ss_pred EEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999998999998999999 99999999999999999888876543 46888999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 458 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 458 ~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.|+..+.| +++++..++. ++.++ +...|+.+++...+.
T Consensus 205 ~la~~s~G-slr~al~lld--qai~~--~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 205 LLARAAAG-SMRDALSLLD--QAIAY--GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHcCC-CHHHHHHHHH--HHHHh--cCCCcCHHHHHHHHC
Confidence 99999987 5555555554 23334 356788888887664
No 83
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=7.8e-18 Score=188.33 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=149.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
....+|++|||++.+.+.|...+.. +...+.+||+||+|||||++|+.||+.++|.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 4567899999999999988877653 2233458999999999999999999999652
Q ss_pred ---------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 009856 303 ---------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 373 (523)
Q Consensus 303 ---------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 373 (523)
|+.+++.. ..+.+....+............+.|+||||+|.|. ....+.||+.+++.
T Consensus 82 ~~g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaLLK~LEEp 147 (824)
T PRK07764 82 APGGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNALLKIVEEP 147 (824)
T ss_pred HcCCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHHHHHHhCC
Confidence 11121111 01222233333222222233457899999999972 35677888888888
Q ss_pred CCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCH
Q 009856 374 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 453 (523)
Q Consensus 374 ~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (523)
..+++||++|+.++.|.+.|++|| .++.|..++.++...+|..++..... .+++
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv-------------------------~id~ 201 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGV-------------------------PVEP 201 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 889999999998889999999999 89999999999999999988876544 4688
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 454 NVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 454 ~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+.+..|+..+.| +.+++..++. ..+...+...||.+++..++
T Consensus 202 eal~lLa~~sgG-dlR~Al~eLE---KLia~~~~~~IT~e~V~all 243 (824)
T PRK07764 202 GVLPLVIRAGGG-SVRDSLSVLD---QLLAGAGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHH---HHHhhcCCCCCCHHHHHHHh
Confidence 899999999877 5555555554 32222334567777666543
No 84
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.5e-16 Score=169.06 Aligned_cols=230 Identities=21% Similarity=0.271 Sum_probs=150.7
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----------ch
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------~~ 315 (523)
.+-+|.+.+++++...+.-......-..| -++|+||||+|||+|++.||+.+|+.|+.++.+.+.. +.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGp--ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGP--ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCc--EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccc
Confidence 57789999999998866543333222233 4889999999999999999999999999998655422 34
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHH---------HH---hCCCCCCEEEEEee
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL---------FR---TGDQSRDIVLVLAT 383 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll---------~~---~~~~~~~v~iI~tt 383 (523)
|..++.+-..+..+...+| |++|||||++.++-.+. ..++|..+| +. +..+-.+|+||+|+
T Consensus 401 GamPGrIiQ~mkka~~~NP--v~LLDEIDKm~ss~rGD-----PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 401 GAMPGKIIQGMKKAGVKNP--VFLLDEIDKMGSSFRGD-----PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred ccCChHHHHHHHHhCCcCC--eEEeechhhccCCCCCC-----hHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 4566666666766765553 88899999997643221 122232222 11 12234589999999
Q ss_pred CCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH-
Q 009856 384 NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK- 462 (523)
Q Consensus 384 n~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~- 462 (523)
|..+.++.+|++|+ ++|.++-|+.+|...|.+.||-.......+.. ... -.++++++..|...
T Consensus 474 Nsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~------------~~e---l~i~d~ai~~iI~~Y 537 (782)
T COG0466 474 NSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLK------------KGE---LTITDEAIKDIIRYY 537 (782)
T ss_pred CccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCC------------ccc---eeecHHHHHHHHHHH
Confidence 99999999999999 99999999999999999998743322111110 011 15788888887654
Q ss_pred CCCCCHH----HHHHHHHHHHHH-HHcCCCC--ccCHHHHHHHHH
Q 009856 463 TEGFSGR----EIAKLMASVQAA-VYARPDC--VLDSQLFREVVE 500 (523)
Q Consensus 463 t~G~sgr----dI~~L~~~~~~a-~~~~~~~--~it~e~~~~~l~ 500 (523)
|.---.| +|.++|+.+-.. +...... .++...+.+-+.
T Consensus 538 TREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 538 TREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 4322224 445555322222 2222222 466666665543
No 85
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=8.3e-18 Score=183.22 Aligned_cols=203 Identities=20% Similarity=0.272 Sum_probs=150.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
+.+.+|+++||++.+.+.|...+.. +..++.+|||||+|||||++|+++|+.+++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 5567899999999999888876653 3344568999999999999999999998643
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.+++.. .. ....++.+...+. ...++.|+||||+|.|. ....+.|+..++.
T Consensus 83 ~~g~~~d~~eid~~s--~~---~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk~LEe 145 (576)
T PRK14965 83 TEGRSVDVFEIDGAS--NT---GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLKTLEE 145 (576)
T ss_pred hcCCCCCeeeeeccC--cc---CHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHHHHHc
Confidence 22222211 11 2233444443332 23456799999999862 3457788888888
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
++.+++||++|+.++.+.+.+++|| ..+.|..++..+....+...+..... .++
T Consensus 146 pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi-------------------------~i~ 199 (576)
T PRK14965 146 PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGI-------------------------SIS 199 (576)
T ss_pred CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCC-------------------------CCC
Confidence 8889999999999999999999999 89999999999999999988877554 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHcCCCCccCHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQ-AAVYARPDCVLDSQLFREV 498 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~-~a~~~~~~~~it~e~~~~~ 498 (523)
++.+..|+..+.| +++.+++.+. ..+|.. ..||.+++..+
T Consensus 200 ~~al~~la~~a~G----~lr~al~~Ldqliay~g--~~It~edV~~l 240 (576)
T PRK14965 200 DAALALVARKGDG----SMRDSLSTLDQVLAFCG--DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHhcc--CCCCHHHHHHH
Confidence 9999999999988 5555555443 334433 35888887766
No 86
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.6e-17 Score=177.02 Aligned_cols=209 Identities=20% Similarity=0.251 Sum_probs=149.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++++|++.+...+...+.. +..++.+|||||||+|||++|+.+|..+++.
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 4567899999999999988776642 2334458899999999999999999988641
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 375 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 375 (523)
++.++++ ...+.+....+............+.|+||||+|.|. ...++.++..+..++.
T Consensus 83 ~~g~~~d~~eidaa--s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LEepp~ 148 (486)
T PRK14953 83 DKGSFPDLIEIDAA--SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLEEPPP 148 (486)
T ss_pred hcCCCCcEEEEeCc--cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHhcCCC
Confidence 1111110 011222233333333332233456799999999862 2356777777787778
Q ss_pred CEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 376 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 376 ~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
.+++|++|+.++.+.+++.+|| ..+.|++|+.++...++..++..... .++++.
T Consensus 149 ~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi-------------------------~id~~a 202 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKI-------------------------EYEEKA 202 (486)
T ss_pred CeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 8899998988888999999999 68999999999999999999887654 478889
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+..|+..+.| +++.+.+.++.++.. ....+|.+++..++.
T Consensus 203 l~~La~~s~G----~lr~al~~Ldkl~~~-~~~~It~~~V~~~lg 242 (486)
T PRK14953 203 LDLLAQASEG----GMRDAASLLDQASTY-GEGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHh-cCCCcCHHHHHHHhC
Confidence 9999999988 555555555444322 245789888888653
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=3.1e-17 Score=173.73 Aligned_cols=208 Identities=20% Similarity=0.237 Sum_probs=150.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++|||++.+...+...+.. +..++++|||||||+|||++|+++|+.+.+.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 3457899999999999887776642 3344569999999999999999999988542
Q ss_pred --------eeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCC
Q 009856 303 --------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374 (523)
Q Consensus 303 --------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 374 (523)
++.+++.. ..+.+....+...+........+.|+||||+|.+. ....+.|+..++..+
T Consensus 84 i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LLk~lEep~ 149 (451)
T PRK06305 84 ISSGTSLDVLEIDGAS--HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLLKTLEEPP 149 (451)
T ss_pred HhcCCCCceEEeeccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHHHHhhcCC
Confidence 22222211 12223333333333322223457899999999873 234667777777777
Q ss_pred CCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 375 ~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
..++||++||.+..+.+++.+|| ..+.|+.++.++....+...+..... .++++
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~-------------------------~i~~~ 203 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGI-------------------------ETSRE 203 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHH
Confidence 88899999998899999999999 78999999999999999888876543 47889
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 455 VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 455 ~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
.+..|+..+.| |++.+++.++..+...+ ..||.+++..++
T Consensus 204 al~~L~~~s~g----dlr~a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 204 ALLPIARAAQG----SLRDAESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 99999999988 66666666665442222 458888776654
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.3e-17 Score=175.81 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=147.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|+++||++.+.+.+...+.. +..++.+|||||||+|||++|+++|+.+.++
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~-------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN-------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4567899999999999888877642 3334457999999999999999999987421
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.++++. .. ....++.+..... ...++.|+||||+|.|. ...++.|+..++.
T Consensus 81 ~~~~h~dv~eldaas--~~---gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK~LEE 143 (535)
T PRK08451 81 LENRHIDIIEMDAAS--NR---GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLKTLEE 143 (535)
T ss_pred hhcCCCeEEEecccc--cc---CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHHhh
Confidence 22222111 11 1234444443322 22346799999999862 3456777888887
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
++..++||++|+.+..+.+++++|+ ..++|.+++.++....+...+...+. .++
T Consensus 144 pp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi-------------------------~i~ 197 (535)
T PRK08451 144 PPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGV-------------------------SYE 197 (535)
T ss_pred cCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8888999999998999999999998 79999999999999999988876544 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++.+..|+..+.| +++.+++.++.++... .+.||.+++..++
T Consensus 198 ~~Al~~Ia~~s~G----dlR~alnlLdqai~~~-~~~It~~~V~~~l 239 (535)
T PRK08451 198 PEALEILARSGNG----SLRDTLTLLDQAIIYC-KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHHHHhc-CCCCCHHHHHHHh
Confidence 8999999999988 5555555554433322 3567777776553
No 89
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=3.2e-17 Score=170.43 Aligned_cols=211 Identities=19% Similarity=0.239 Sum_probs=149.4
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC-------cc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-------VA 312 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~-------~~ 312 (523)
..+.+|++++|++.+.+.+...+.. +..++++|||||||+|||++|+++++.+.++.....+.. +.
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 4567899999999998887766542 344567999999999999999999998865321111100 00
Q ss_pred cchhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCC
Q 009856 313 PLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 313 ~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l 389 (523)
.........+..++..+.. ..++.||||||+|.+.. ..++.++..+...+..+++|++++.+..+
T Consensus 84 ~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 84 AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 0111122345555554432 23457999999998622 23566666666666778888889888999
Q ss_pred cHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 390 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+++.+|+ .++.|++|+.++...++...+.+... .++++.+..|+..+.|
T Consensus 152 ~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~-------------------------~i~~~al~~l~~~~~g---- 201 (367)
T PRK14970 152 IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGI-------------------------KFEDDALHIIAQKADG---- 201 (367)
T ss_pred CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhCCC----
Confidence 99999999 68999999999999999988876554 4789999999999877
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
|++.+.+.++..+...... ||.+++..++.
T Consensus 202 dlr~~~~~lekl~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 202 ALRDALSIFDRVVTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred CHHHHHHHHHHHHHhcCCC-CCHHHHHHHhC
Confidence 6666666555544322333 88888887765
No 90
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.77 E-value=2.2e-17 Score=169.51 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=148.5
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC-----CCeeEEecCCcccch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~-----~~~~~v~~~~~~~~~ 315 (523)
.+.+|++++|++.+...+..++.. +..+++||+||||||||++|+++++.+. .+++.++++++....
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS--------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 456789999999998888776542 1123699999999999999999999874 346777776542100
Q ss_pred --------------h-------hHHHHHHHHHHHHHhc----CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh
Q 009856 316 --------------A-------QAVTKIHEIFDWAKKS----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 370 (523)
Q Consensus 316 --------------~-------~~~~~l~~~f~~a~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 370 (523)
+ .....+..+..+.... ..+.+|||||+|.+. ......|..++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~---------~~~~~~L~~~le~- 151 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR---------EDAQQALRRIMEQ- 151 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC---------HHHHHHHHHHHHh-
Confidence 0 0111222222222221 234699999999862 2334445444433
Q ss_pred CCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 371 GDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 371 ~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
...++.||++++.+..+.+.+.+|+ ..+.|++|+.+++..++...+..... .
T Consensus 152 --~~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~-------------------------~ 203 (337)
T PRK12402 152 --YSRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGV-------------------------D 203 (337)
T ss_pred --ccCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------C
Confidence 3445668888877778888999998 78999999999999999998876554 4
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 451 LSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 451 ~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
++++.+..|+..+.| |++.+++.++.++... ..||.+++..++..
T Consensus 204 ~~~~al~~l~~~~~g----dlr~l~~~l~~~~~~~--~~It~~~v~~~~~~ 248 (337)
T PRK12402 204 YDDDGLELIAYYAGG----DLRKAILTLQTAALAA--GEITMEAAYEALGD 248 (337)
T ss_pred CCHHHHHHHHHHcCC----CHHHHHHHHHHHHHcC--CCCCHHHHHHHhCC
Confidence 789999999999877 8888888888766432 47999998887664
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2e-17 Score=180.47 Aligned_cols=210 Identities=24% Similarity=0.330 Sum_probs=151.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE---ecC-------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM---TGG------- 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v---~~~------- 309 (523)
..+.+|++|+|++.+.+.|...+.. +..++.+|||||||||||++|+++|+.+.++-... .|+
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~-------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS-------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 4677899999999999888776653 33445689999999999999999999986532100 010
Q ss_pred ---Ccccchh---hHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEE
Q 009856 310 ---DVAPLGA---QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLV 380 (523)
Q Consensus 310 ---~~~~~~~---~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI 380 (523)
++....+ .....++.+...+. ...++.|+||||+|.|. ...++.|+..++.++..++||
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcCCCceEEE
Confidence 1100110 12333444444443 23456799999999863 246778888888888899999
Q ss_pred EeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHH
Q 009856 381 LATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA 460 (523)
Q Consensus 381 ~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 460 (523)
++|+.++.+.+.+++|| .++.|.+|+.++....+...+.+... .++++.+..++
T Consensus 153 LaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI-------------------------~id~eAl~~LA 206 (725)
T PRK07133 153 LATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENI-------------------------SYEKNALKLIA 206 (725)
T ss_pred EEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHH
Confidence 99999999999999999 79999999999999999988876544 46788899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 461 RKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 461 ~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
..+.| +.|++..++..+ +.++ ...||.+++..++
T Consensus 207 ~lS~G-slR~AlslLekl--~~y~--~~~It~e~V~ell 240 (725)
T PRK07133 207 KLSSG-SLRDALSIAEQV--SIFG--NNKITLKNVEELF 240 (725)
T ss_pred HHcCC-CHHHHHHHHHHH--HHhc--cCCCCHHHHHHHH
Confidence 99988 555555555432 2343 3458888777653
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=1.6e-17 Score=179.55 Aligned_cols=217 Identities=20% Similarity=0.238 Sum_probs=151.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecC
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGG 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~ 309 (523)
..+.+|++++|++...+.+...+. .+.+.++||+||||||||++|++++..+ +.+|+.++|.
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~--------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC--------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh--------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 455789999999999888875321 1223479999999999999999998753 3578888876
Q ss_pred Cc--cc--chhhHHHHHH-------HHHH---------HHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH
Q 009856 310 DV--AP--LGAQAVTKIH-------EIFD---------WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 369 (523)
Q Consensus 310 ~~--~~--~~~~~~~~l~-------~~f~---------~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 369 (523)
.. .. +.....+..+ ..|. .+.....+++|||||++.| +...+..|..++..
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L---------~~~~q~~LL~~Le~ 201 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL---------HPVQMNKLLKVLED 201 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC---------CHHHHHHHHHHHHh
Confidence 31 11 1000000000 0000 0111234689999999987 45666666666543
Q ss_pred hC-------------------------CCCCCEEEEE-eeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 370 TG-------------------------DQSRDIVLVL-ATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 370 ~~-------------------------~~~~~v~iI~-ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
-. ..+.++++|+ |++.++.++|++++|| ..+.|++++.+++..|++.++++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~ 280 (531)
T TIGR02902 202 RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIG 280 (531)
T ss_pred CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcC
Confidence 10 0123456665 4578999999999999 7899999999999999999988754
Q ss_pred cCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 424 CSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
. .++++.++.|+.++ +++|++.+++..+...+.......||.+|+..++..
T Consensus 281 i-------------------------~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 281 I-------------------------NLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred C-------------------------CcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 3 47888999888876 578888888876655555555568999999999863
No 93
>PRK06893 DNA replication initiation factor; Validated
Probab=99.77 E-value=3.6e-17 Score=158.70 Aligned_cols=210 Identities=13% Similarity=0.187 Sum_probs=135.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
.+..+|+++++.+... .+..+...... ...+.++||||||||||+|++++|+.+ +....+++.......
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~~-----~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~-- 81 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFID-----LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF-- 81 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhhc-----cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--
Confidence 4677899999877543 22222222111 122358999999999999999999886 344445444321111
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCCCCc---HH
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGDLD---SA 392 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~~l~---~a 392 (523)
....+.. .....+|+|||++.+.+. ......+..++...... +..++|+|+| .|..++ +.
T Consensus 82 -----~~~~~~~---~~~~dlLilDDi~~~~~~-------~~~~~~l~~l~n~~~~~-~~~illits~~~p~~l~~~~~~ 145 (229)
T PRK06893 82 -----SPAVLEN---LEQQDLVCLDDLQAVIGN-------EEWELAIFDLFNRIKEQ-GKTLLLISADCSPHALSIKLPD 145 (229)
T ss_pred -----hHHHHhh---cccCCEEEEeChhhhcCC-------hHHHHHHHHHHHHHHHc-CCcEEEEeCCCChHHccccchh
Confidence 1122222 223579999999987432 12233455555444322 3334555554 455544 89
Q ss_pred Hhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 393 ITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 393 l~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+.+|+. .++.+++|+.+++..|++..+..... .++++++..|+.++.| +.+.
T Consensus 146 L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-------------------------~l~~~v~~~L~~~~~~-d~r~ 199 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-------------------------ELSDEVANFLLKRLDR-DMHT 199 (229)
T ss_pred HHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhccC-CHHH
Confidence 999863 68899999999999999988875433 4899999999999988 6666
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 471 IAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+..+++.+..++. .....||...+++++.
T Consensus 200 l~~~l~~l~~~~~-~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 200 LFDALDLLDKASL-QAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHHHHH-hcCCCCCHHHHHHHhc
Confidence 6666666654444 3345799999988764
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.77 E-value=2.6e-17 Score=170.36 Aligned_cols=206 Identities=24% Similarity=0.305 Sum_probs=149.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++++|++.+.+.+...+.. +..++.+|||||||+|||++|+++++.+.++
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3457889999999999988776542 3344568999999999999999999987543
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.+++.. ......+..++..+... .++.||+|||+|.+. ...++.++..++.
T Consensus 81 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~~le~ 143 (355)
T TIGR02397 81 NSGSSLDVIEIDAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLKTLEE 143 (355)
T ss_pred hcCCCCCEEEeeccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHHHHhC
Confidence 22222211 11233445555554332 345699999999862 2346667777777
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.+.++++|++|+.++.+.+.+.+|+ ..+.|++|+.++...++..++..... .++
T Consensus 144 ~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~-------------------------~i~ 197 (355)
T TIGR02397 144 PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGI-------------------------KIE 197 (355)
T ss_pred CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 7778889999998888899999999 78999999999999999999886543 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
++.+..++..+.| +++.+.+.++..+.... ..||.+++..++.
T Consensus 198 ~~a~~~l~~~~~g----~~~~a~~~lekl~~~~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 198 DEALELIARAADG----SLRDALSLLDQLISFGN-GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHcCC----ChHHHHHHHHHHHhhcC-CCCCHHHHHHHhC
Confidence 8899999999877 55555555544333222 4599998887764
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-17 Score=185.18 Aligned_cols=206 Identities=17% Similarity=0.241 Sum_probs=145.4
Q ss_pred CCcccCHHHHHHHHHHHHHHhcch-hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc------chhhH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP------LGAQA 318 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~------~~~~~ 318 (523)
..|+|++.+...|...+.....+. .+..|..++||+||||||||++|+++|..++.+++.++++.... +.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 579999999999998887655432 23456678999999999999999999999999999999877532 11100
Q ss_pred HH----HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh---C-----CCCCCEEEEEeeCCC
Q 009856 319 VT----KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT---G-----DQSRDIVLVLATNRP 386 (523)
Q Consensus 319 ~~----~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~---~-----~~~~~v~iI~ttn~~ 386 (523)
.+ .....+..+....+++||||||+|++ ++..+..|..+++.- + .+..+++||+|||..
T Consensus 538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka---------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g 608 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA---------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_pred CCcccccccchHHHHHHhCCCcEEEeccHhhh---------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence 00 11223444445566899999999996 334444454444321 0 123588899999943
Q ss_pred -------------------------CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhh
Q 009856 387 -------------------------GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 441 (523)
Q Consensus 387 -------------------------~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 441 (523)
..+.|+|++|+|.+|.|++++.++...|+..++...... +.
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~-------------l~- 674 (758)
T PRK11034 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ-------------LD- 674 (758)
T ss_pred HHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH-------------HH-
Confidence 136799999999999999999999999999998765330 00
Q ss_pred hhhhhhhccCCHHHHHHHHHHC--CCCCHHHHHHHHH
Q 009856 442 QQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMA 476 (523)
Q Consensus 442 ~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~ 476 (523)
..++.+ .+++..++.|+... ..+..|.|+.++.
T Consensus 675 -~~~i~l-~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 675 -QKGVSL-EVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred -HCCCCc-eECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 112222 48899999998753 3456678888774
No 96
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=2.6e-18 Score=175.68 Aligned_cols=219 Identities=24% Similarity=0.333 Sum_probs=171.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-- 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-- 313 (523)
..+...+.+|||.+.++..+...+..+..+... |||.|.+||||..+|++|+..+ ..||+.+||+.+..
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~VA~Sd~t------VLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVVAKSDST------VLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred cchhcccccceecCHHHHHHHHHHHHHhcCCCe------EEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 344678899999999999999999988877665 9999999999999999999988 57999999999876
Q ss_pred chhhHHHHHHHHHHHHHhcCC-------ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-----CCC---CCCEE
Q 009856 314 LGAQAVTKIHEIFDWAKKSKK-------GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----GDQ---SRDIV 378 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~-------~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~~---~~~v~ 378 (523)
+.++.+++.++.|+.|...++ |+-||||||..| +...+..|..+|+.- +.+ .-+|.
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ikVDVR 360 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRTIKVDVR 360 (550)
T ss_pred HHHHHhcccccccccchhccCcceeecCCCeEechhhccC---------CHHHHHHHHHHHhhcceeecCCCceeEEEEE
Confidence 678899999999999876654 467999999765 778888999988763 322 23789
Q ss_pred EEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhh
Q 009856 379 LVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 447 (523)
Q Consensus 379 iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (523)
||++||.. ..+...|.-|+ .++.+..|+..+|.. +..+|+.+... ..+..
T Consensus 361 iIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~------------------~~gr~ 421 (550)
T COG3604 361 VIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRR------------------RLGRA 421 (550)
T ss_pred EEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHH------------------hcCCc
Confidence 99999982 23344444466 688888898877765 66777776554 22222
Q ss_pred hccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 009856 448 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 495 (523)
Q Consensus 448 ~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~ 495 (523)
...+++++++.|..+. |+| +++.|-+.++.++... +..++.+++
T Consensus 422 ~l~ls~~Al~~L~~y~--wPG-NVRELen~veRavlla-~~~~~~~d~ 465 (550)
T COG3604 422 ILSLSAEALELLSSYE--WPG-NVRELENVVERAVLLA-GRLTRRGDL 465 (550)
T ss_pred ccccCHHHHHHHHcCC--CCC-cHHHHHHHHHHHHHHh-cccCCCcce
Confidence 2358999999998874 666 9999999999999876 566666665
No 97
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=4.3e-17 Score=177.02 Aligned_cols=212 Identities=20% Similarity=0.235 Sum_probs=156.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe-------cC---
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT-------GG--- 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~-------~~--- 309 (523)
..+.+|++|||++.+.+.|...+.. +..+.++||+||+|||||++|+++|+.+++.....+ |+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 4567899999999999998876652 344567999999999999999999999865422111 11
Q ss_pred -----------Ccccch---hhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 310 -----------DVAPLG---AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 310 -----------~~~~~~---~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++..+. ......++.+++.+. ....+.|+||||+|.|. ...++.|+..+..
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtLEe 158 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTLEE 158 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHHHh
Confidence 111110 112344555555443 23356899999999872 2457788888888
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.+..++||++|+.++.+.+.+++|| ..+.|..|+.++....+...+.+... .++
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi-------------------------~i~ 212 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGV-------------------------EVE 212 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8888999999998888999999999 79999999999999999998876554 478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
++.+..|+..+.| +.+++..++.. .+.++ ...||.+++...+..
T Consensus 213 ~eAl~lIa~~a~G-dlr~al~~Ldk--li~~g--~g~It~e~V~~llg~ 256 (598)
T PRK09111 213 DEALALIARAAEG-SVRDGLSLLDQ--AIAHG--AGEVTAEAVRDMLGL 256 (598)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH--HHhhc--CCCcCHHHHHHHhCC
Confidence 8999999999987 55565555542 33443 357999999887653
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.76 E-value=1.1e-16 Score=173.66 Aligned_cols=226 Identities=18% Similarity=0.204 Sum_probs=161.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-------C---CCeeEEecC
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------G---LDYAMMTGG 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~---~~~~~v~~~ 309 (523)
.+...-+.+++.+.-...|..++..... +..|...++|+|+||||||.+++.+...+ + ..+++++|.
T Consensus 749 ~~DYVPD~LPhREeEIeeLasfL~paIk---gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 749 QLDVVPKYLPCREKEIKEVHGFLESGIK---QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcccCCCcCCChHHHHHHHHHHHHHHHh---cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 3444457788887777777766654332 12333345799999999999999998776 2 457888985
Q ss_pred Ccccc------------------hhhHHHHHHHHHHHHHh-cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh
Q 009856 310 DVAPL------------------GAQAVTKIHEIFDWAKK-SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 370 (523)
Q Consensus 310 ~~~~~------------------~~~~~~~l~~~f~~a~~-~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 370 (523)
.+... +......+..+|..... .....||||||||.|... .+.+|..|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHh
Confidence 53321 11223345556654422 233568999999998542 345677776665
Q ss_pred CCCCCCEEEEEeeCC---CCCCcHHHhccccc-eEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhh
Q 009856 371 GDQSRDIVLVLATNR---PGDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 446 (523)
Q Consensus 371 ~~~~~~v~iI~ttn~---~~~l~~al~~Rf~~-~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (523)
......++||+++|. ++.++|.+.+||.. .|.|++|+.+++..||...+.....
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~g---------------------- 954 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKE---------------------- 954 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCC----------------------
Confidence 545567889999985 55778899999864 4899999999999999999875311
Q ss_pred hhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 447 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 447 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
.++++++..+|......+| |+|.++..+..|+-..+...|+.+++.+|+....
T Consensus 955 ---VLdDdAIELIArkVAq~SG-DARKALDILRrAgEikegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 955 ---IIDHTAIQLCARKVANVSG-DIRKALQICRKAFENKRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred ---CCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHH
Confidence 3788999999885443344 9999999999988776777999999999987653
No 99
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.76 E-value=4e-17 Score=180.62 Aligned_cols=214 Identities=23% Similarity=0.315 Sum_probs=146.4
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 320 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~ 320 (523)
.+.+|++++|++.+......+...+.. ....+++||||||||||++|+++|+.++.+|+.+++.... ..
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i~ 91 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------VK 91 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------hH
Confidence 357889999999987543333333322 2234799999999999999999999999999888875321 11
Q ss_pred HHHHHHHHH----HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee--CCCCCCcHHHh
Q 009856 321 KIHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSAIT 394 (523)
Q Consensus 321 ~l~~~f~~a----~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt--n~~~~l~~al~ 394 (523)
.+...+..+ .....+.+|||||+|.| +...+..|..++ . .+.+++|++| |....++++++
T Consensus 92 dir~~i~~a~~~l~~~~~~~IL~IDEIh~L---------n~~qQdaLL~~l---E--~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 92 DLRAEVDRAKERLERHGKRTILFIDEVHRF---------NKAQQDALLPWV---E--NGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEeChhhC---------CHHHHHHHHHHh---c--CceEEEEEecCCChHhhhhhHhh
Confidence 222222222 12234679999999987 334444444433 2 3456777655 34457899999
Q ss_pred ccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHH
Q 009856 395 DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 474 (523)
Q Consensus 395 ~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 474 (523)
||+ .++.|++++.+++..+++.++..... ..+.....++++.++.|+..+.| |++.+
T Consensus 158 SR~-~v~~l~pLs~edi~~IL~~~l~~~~~------------------~~g~~~v~I~deaL~~La~~s~G----D~R~l 214 (725)
T PRK13341 158 SRS-RLFRLKSLSDEDLHQLLKRALQDKER------------------GYGDRKVDLEPEAEKHLVDVANG----DARSL 214 (725)
T ss_pred ccc-cceecCCCCHHHHHHHHHHHHHHHHh------------------hcCCcccCCCHHHHHHHHHhCCC----CHHHH
Confidence 998 78999999999999999999874321 00000114789999999999888 88999
Q ss_pred HHHHHHHHHcCC---CC--ccCHHHHHHHHHHH
Q 009856 475 MASVQAAVYARP---DC--VLDSQLFREVVEYK 502 (523)
Q Consensus 475 ~~~~~~a~~~~~---~~--~it~e~~~~~l~~~ 502 (523)
++.++.++.... .. .||.+++.+++...
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 988888765321 11 37888888877653
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=2.1e-17 Score=185.65 Aligned_cols=202 Identities=19% Similarity=0.302 Sum_probs=145.2
Q ss_pred CCcccCHHHHHHHHHHHHHHhcch-hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-----------
Q 009856 246 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------- 313 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------- 313 (523)
..|+|++.+.+.+...+....... .+..|..++||+||||||||++|++||..++.+++.++++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 679999999999988777654432 23456667999999999999999999999999999998876422
Q ss_pred ---chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEe
Q 009856 314 ---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLA 382 (523)
Q Consensus 314 ---~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~t 382 (523)
.+.+.. ..+..+.+..+++||||||+|++ ++.....|..+++... .+..+++||+|
T Consensus 534 ~gyvg~~~~----~~l~~~~~~~p~~VvllDEieka---------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 534 PGYVGFEQG----GLLTEAVRKHPHCVLLLDEIEKA---------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred CCCcccchh----hHHHHHHHhCCCeEEEEechhhc---------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 111112 22333335567899999999986 3344455555543310 13457889999
Q ss_pred eCCCC-------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhh
Q 009856 383 TNRPG-------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437 (523)
Q Consensus 383 tn~~~-------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~ 437 (523)
||... .+.|+|++||+.+|.|.+++.++...|+..++........
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~---------- 670 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN---------- 670 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH----------
Confidence 98642 2678999999999999999999999999999886432000
Q ss_pred hhhhhhhhhhhccCCHHHHHHHHHH--CCCCCHHHHHHHHH
Q 009856 438 LFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMA 476 (523)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~ 476 (523)
..++. -.+++++++.|+.. ...+..|.|+.++.
T Consensus 671 -----~~~~~-l~i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 671 -----EKNIK-LELTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred -----hCCCe-EEeCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 11111 25789999999885 45567788888875
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.76 E-value=2.3e-17 Score=162.06 Aligned_cols=220 Identities=22% Similarity=0.331 Sum_probs=149.4
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC---eeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---~~~v~~~~~~~~~~ 316 (523)
..+.+++++||++++... ..++..... ....++++|+||||||||++|+.|+.....+ |+.++...
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ie----q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~------ 200 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIE----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN------ 200 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHH----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc------
Confidence 346678999999888766 333332221 2233479999999999999999999988665 55544332
Q ss_pred hHHHHHHHHHHHHHh----cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee--CCCCCCc
Q 009856 317 QAVTKIHEIFDWAKK----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLD 390 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt--n~~~~l~ 390 (523)
.....++++|..+.. .++..|||||||+.|. ..+++.+.... ..+.+++|++| |..-.++
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN---------ksQQD~fLP~V-----E~G~I~lIGATTENPSFqln 266 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN---------KSQQDTFLPHV-----ENGDITLIGATTENPSFQLN 266 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh---------hhhhhccccee-----ccCceEEEecccCCCccchh
Confidence 233456666666543 2345799999999973 24444444443 46778889866 5555899
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
.+|++|| .++.+...+.+....||.+-+.-+....-.... + ++. ...+++..++.++..+.| |
T Consensus 267 ~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~-l---------~n~--s~~ve~siidyla~lsdG----D 329 (554)
T KOG2028|consen 267 AALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDP-L---------PNS--SMFVEDSIIDYLAYLSDG----D 329 (554)
T ss_pred HHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCC-C---------CCc--chhhhHHHHHHHHHhcCc----h
Confidence 9999999 888999999999999998866543321100000 0 000 012678899999999999 8
Q ss_pred HHHHHHHHHHH--HHcC-----CCCccCHHHHHHHHHH
Q 009856 471 IAKLMASVQAA--VYAR-----PDCVLDSQLFREVVEY 501 (523)
Q Consensus 471 I~~L~~~~~~a--~~~~-----~~~~it~e~~~~~l~~ 501 (523)
-+..+|+++.+ .... .+..++.+|+.+.+..
T Consensus 330 aR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 330 ARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 88888887776 2221 2347899999988765
No 102
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.3e-17 Score=167.74 Aligned_cols=173 Identities=23% Similarity=0.245 Sum_probs=127.0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhc----chhcCCC-CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~----~~~~~~p-~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~ 315 (523)
.+.+|+.++..+.+++.|..-+..+.. ....+.| -+++|||||||||||+++.|+|++++.+++.++-+.+....
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~ 275 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS 275 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH
Confidence 348999999999999998775555443 2334444 47999999999999999999999999999988766553321
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC-----cH-HHHHHHHHHHHHhC---CC-CCCEEEEEeeCC
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM-----SE-AQRSALNALLFRTG---DQ-SRDIVLVLATNR 385 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~-----~~-~~~~~l~~ll~~~~---~~-~~~v~iI~ttn~ 385 (523)
.++.++.. .++.+||+|+|||+-+..+..... .. ...-.|..||.-++ +. ..--+||+|||+
T Consensus 276 -----dLr~LL~~---t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 276 -----DLRHLLLA---TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred -----HHHHHHHh---CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 25555543 345689999999987653322111 10 11233444444443 22 234589999999
Q ss_pred CCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHh
Q 009856 386 PGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKK 421 (523)
Q Consensus 386 ~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~ 421 (523)
++.|||||++ |+|.+|+++..+......++..|+..
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 9999999999 99999999999999999999999864
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=6.9e-17 Score=174.67 Aligned_cols=206 Identities=22% Similarity=0.274 Sum_probs=149.8
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------------
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---------------- 302 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---------------- 302 (523)
.+.+.+|+++||++.+...|...+.. +..++.+|||||||+|||++|+++|+.++++
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 35677899999999999988776652 3344569999999999999999999998652
Q ss_pred --------eeEEecCCcccchhhHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 303 --------YAMMTGGDVAPLGAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 303 --------~~~v~~~~~~~~~~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
++.+++.. ......+..+...+ ....++.|+||||+|.|. ...++.|+..++
T Consensus 82 i~~~~~~dv~~idgas-----~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK~LE 144 (563)
T PRK06647 82 IDNDNSLDVIEIDGAS-----NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLKTIE 144 (563)
T ss_pred HHcCCCCCeEEecCcc-----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHHhhc
Confidence 11121110 01223333333222 223456799999999862 345777888888
Q ss_pred CCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccC
Q 009856 372 DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 451 (523)
Q Consensus 372 ~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (523)
.++..++||++|+.+..+.+++.+|| ..+.|.+|+.++...++...+..... .+
T Consensus 145 epp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi-------------------------~i 198 (563)
T PRK06647 145 EPPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQI-------------------------KY 198 (563)
T ss_pred cCCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CC
Confidence 88889999999988889999999999 68999999999999999888766443 47
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+++.+..|+..+.| +.+++..++.. .+++. +..+|.+++..++
T Consensus 199 d~eAl~lLa~~s~G-dlR~alslLdk--lis~~--~~~It~e~V~~ll 241 (563)
T PRK06647 199 EDEALKWIAYKSTG-SVRDAYTLFDQ--VVSFS--DSDITLEQIRSKM 241 (563)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHH--HHhhc--CCCCCHHHHHHHh
Confidence 89999999999888 55555555542 23443 2568888777754
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.1e-17 Score=170.16 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=147.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCee----------EEecC
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA----------MMTGG 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~----------~v~~~ 309 (523)
..+..|++|+|++.+.+.|...+.. +..+..+||+||||||||++|+++|+.+.+.-. .-.|+
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~-------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM-------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh-------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 4567899999999999988776552 333456999999999999999999999866310 00111
Q ss_pred --------------Ccccchh---hHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH
Q 009856 310 --------------DVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 369 (523)
Q Consensus 310 --------------~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 369 (523)
++..+.+ .....+..+...+ ....+..|+||||+|.+. ....+.++..
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~~~~~~LLk~ 150 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------IAAFNAFLKT 150 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------HHHHHHHHHH
Confidence 1111111 1123344443333 223456799999999872 1245566777
Q ss_pred hCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhc
Q 009856 370 TGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449 (523)
Q Consensus 370 ~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (523)
+...+..++||++++.+..+.+.+.+|+ .++.|++++.++....+...+.....
T Consensus 151 LEep~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~------------------------- 204 (397)
T PRK14955 151 LEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGI------------------------- 204 (397)
T ss_pred HhcCCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCC-------------------------
Confidence 7777778888888888888999999999 78999999999999988888876443
Q ss_pred cCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHc---CCCCccCHHHHHHHH
Q 009856 450 DLSDNVIQEAARKTEGFSGREIAKLMASVQAA-VYA---RPDCVLDSQLFREVV 499 (523)
Q Consensus 450 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a-~~~---~~~~~it~e~~~~~l 499 (523)
.++++.++.|+..+.| +++.+.+.++.. .|. .....||.+++..++
T Consensus 205 ~i~~~al~~l~~~s~g----~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 205 SVDADALQLIGRKAQG----SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 4899999999999988 555555544433 332 234689998887765
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=5.6e-17 Score=182.18 Aligned_cols=226 Identities=19% Similarity=0.211 Sum_probs=160.9
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...++.+||.+.....+..++.. ....+++|+||||||||++|+++|..+ +..++.++++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~--------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l 249 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR--------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL 249 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH
Confidence 45778999998888876654431 123469999999999999999999987 666777776655
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. .+.++....+..+|+.+... .++||||||+|.|.+.....+.+....+.|...+ ..+.+.+|++||..+
T Consensus 250 ~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-----~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 250 LAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-----SSGKLRCIGSTTYEEY 323 (731)
T ss_pred hhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-----hCCCeEEEEecCHHHH
Confidence 3 24567778899999988655 4789999999999876543222223344444444 356789999998633
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
..+++|.+|| ..|.|+.|+.+++..|++.....+.. ..+ ..++++++..++..+
T Consensus 324 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~------------------~~~---v~i~~~al~~~~~ls 381 (731)
T TIGR02639 324 KNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEE------------------FHH---VKYSDEALEAAVELS 381 (731)
T ss_pred HHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHh------------------ccC---cccCHHHHHHHHHhh
Confidence 5799999999 58999999999999999988766432 011 147899999998877
Q ss_pred CCCCH-----HHHHHHHHHHHHHHHcC----CCCccCHHHHHHHHHHHH
Q 009856 464 EGFSG-----REIAKLMASVQAAVYAR----PDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 464 ~G~sg-----rdI~~L~~~~~~a~~~~----~~~~it~e~~~~~l~~~~ 503 (523)
..|-+ .-.-.|++.+.+.+... ....++.++|..++....
T Consensus 382 ~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 382 ARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred hcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 66533 22334454333333222 234699999999998864
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.75 E-value=1.3e-16 Score=155.45 Aligned_cols=210 Identities=13% Similarity=0.156 Sum_probs=131.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC---CCeeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~~~~~~~~~~ 316 (523)
.+..+|++++.. .....+..+...... ....+++||||||||||++++++++.+. ..+.+++......
T Consensus 16 ~~~~~fd~f~~~-~n~~a~~~l~~~~~~-----~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--- 86 (235)
T PRK08084 16 PDDETFASFYPG-DNDSLLAALQNALRQ-----EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--- 86 (235)
T ss_pred CCcCCccccccC-ccHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---
Confidence 456688888844 333333333222221 1224699999999999999999998763 3344444432111
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCCC---CcHH
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD---LDSA 392 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~~---l~~a 392 (523)
...+++.... ...+|||||++.+..+ ......+..++..... .++..+|+||+ .|.. +.|.
T Consensus 87 ----~~~~~~~~~~---~~dlliiDdi~~~~~~-------~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 87 ----FVPEVLEGME---QLSLVCIDNIECIAGD-------ELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ----hhHHHHHHhh---hCCEEEEeChhhhcCC-------HHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHH
Confidence 1112222221 2358999999987432 2223334333333222 23334555554 4444 6799
Q ss_pred Hhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 393 ITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 393 l~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
|.|||. .++.+.+|+.+++..+++..+..... .++++.++.|+.++.| +.+.
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~-------------------------~l~~~v~~~L~~~~~~-d~r~ 205 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF-------------------------ELPEDVGRFLLKRLDR-EMRT 205 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhhcC-CHHH
Confidence 999985 79999999999999999886655433 4899999999999988 5556
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 471 IAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+..++..+..++.. ....||.+.+.+++.
T Consensus 206 l~~~l~~l~~~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 206 LFMTLDQLDRASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHHHHHh-cCCCCCHHHHHHHHc
Confidence 66666655434433 345699999988763
No 107
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.4e-17 Score=173.67 Aligned_cols=211 Identities=25% Similarity=0.336 Sum_probs=163.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe--e-----------E
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY--A-----------M 305 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~--~-----------~ 305 (523)
.+.+..|++++|++.+...|...+.. +.-...+||+||.|||||++|+.+|+.+++.- . .
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~-------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN-------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh-------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 35677899999999999999887664 23334699999999999999999999997642 0 0
Q ss_pred E-ec--CCcccch---hhHHHHHHHHHHH---HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 009856 306 M-TG--GDVAPLG---AQAVTKIHEIFDW---AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 376 (523)
Q Consensus 306 v-~~--~~~~~~~---~~~~~~l~~~f~~---a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 376 (523)
+ .| .++..+. ..+...++.+.+. +....++.|.+|||++.| ....+|.||..++.++.+
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEEPP~h 149 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEEPPSH 149 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhcccccCccC
Confidence 1 11 1222211 1233344444443 333446789999999985 467899999999999999
Q ss_pred EEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHH
Q 009856 377 IVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 456 (523)
Q Consensus 377 v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (523)
|+||++|..+..+++.++||| ..+.|...+.++....+..++.+... .++++.+
T Consensus 150 V~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I-------------------------~~e~~aL 203 (515)
T COG2812 150 VKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGI-------------------------NIEEDAL 203 (515)
T ss_pred eEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCC-------------------------ccCHHHH
Confidence 999999999999999999999 89999999999999999999987665 5789999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 457 QEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 457 ~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
..|+...+| |.||.-.|++ ++.+++. +.||.+.+...+
T Consensus 204 ~~ia~~a~G-s~RDalslLD--q~i~~~~--~~It~~~v~~~l 241 (515)
T COG2812 204 SLIARAAEG-SLRDALSLLD--QAIAFGE--GEITLESVRDML 241 (515)
T ss_pred HHHHHHcCC-ChhhHHHHHH--HHHHccC--CcccHHHHHHHh
Confidence 999999999 8888888887 5555543 566666665443
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.74 E-value=6.4e-17 Score=172.42 Aligned_cols=226 Identities=17% Similarity=0.215 Sum_probs=148.8
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 312 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~ 312 (523)
...+..+|++++..+.....+..+.....++ +.++++++||||||||||+|++++++.+ +..++++++.++.
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENP---GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCc---CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 3567889999876555554544443333322 2344569999999999999999999987 4557777776543
Q ss_pred cchhhHHH-HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCCC--
Q 009856 313 PLGAQAVT-KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD-- 388 (523)
Q Consensus 313 ~~~~~~~~-~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~~-- 388 (523)
........ .....|.. ......+|+|||++.+.++. ..+..+..++..+.... .. +|+|+| .|..
T Consensus 191 ~~~~~~~~~~~~~~~~~--~~~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~l~~~~-~~-iiits~~~p~~l~ 259 (450)
T PRK00149 191 NDFVNALRNNTMEEFKE--KYRSVDVLLIDDIQFLAGKE-------RTQEEFFHTFNALHEAG-KQ-IVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHcCcHHHHHH--HHhcCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCC-Cc-EEEECCCCHHHHH
Confidence 21101100 00111211 22236799999999875421 12233333333332222 22 455554 4433
Q ss_pred -CcHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 389 -LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 389 -l~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
+++.+.+||. .++.|.+|+.++|..|++..+..... .++++.++.||..+.|
T Consensus 260 ~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~-------------------------~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 260 GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI-------------------------DLPDEVLEFIAKNITS 314 (450)
T ss_pred HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHcCcCC
Confidence 7799999995 58999999999999999999876433 4799999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
+.|+|..+++.+.+.+... ...||.+.+.+++.+...
T Consensus 315 -~~R~l~~~l~~l~~~~~~~-~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 315 -NVRELEGALNRLIAYASLT-GKPITLELAKEALKDLLA 351 (450)
T ss_pred -CHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhc
Confidence 7778888887776665543 356899999999988653
No 109
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.74 E-value=4.1e-17 Score=166.28 Aligned_cols=210 Identities=19% Similarity=0.202 Sum_probs=144.6
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhHHHHH
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQAVTKI 322 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~~~~l 322 (523)
+||.+..+..+...+..+.....+ |||+|+|||||+++|++|+..+ +.||+.++|+.+.. +....++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~p------VLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRP------VLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCC------EEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc
Confidence 578878888877777766654333 9999999999999999999876 47999999997653 222223322
Q ss_pred HHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEeeCCC-
Q 009856 323 HEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRP- 386 (523)
Q Consensus 323 ~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~ttn~~- 386 (523)
...|..+. ....+++|||||++.| +...+..|..+++.-. ....++.||++||..
T Consensus 75 ~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 75 AGAFTGAQKRHQGRFERADGGTLFLDELATA---------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred cccccCcccccCCchhhCCCCEEEeCChHhC---------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH
Confidence 22232221 1234679999999987 5577777777775421 113478999999753
Q ss_pred ------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhh-ccCCHHH
Q 009856 387 ------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITI-KDLSDNV 455 (523)
Q Consensus 387 ------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 455 (523)
..+.+.|..|| ..+.+..|+..+|.+ ++.+|+..+.. ..+..+ ..++++.
T Consensus 146 ~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~------------------~~~~~~~~~ls~~a 206 (329)
T TIGR02974 146 PALAAEGRFRADLLDRL-AFDVITLPPLRERQEDIMLLAEHFAIRMAR------------------ELGLPLFPGFTPQA 206 (329)
T ss_pred HHHhhcCchHHHHHHHh-cchhcCCCchhhhhhhHHHHHHHHHHHHHH------------------HhCCCCCCCcCHHH
Confidence 35778888898 455666666655544 77777766533 122222 3589999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~ 494 (523)
+..|..+. |+| ||+.|.+.++.++..+.+..++.++
T Consensus 207 ~~~L~~y~--WPG-NvrEL~n~i~~~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 207 REQLLEYH--WPG-NVRELKNVVERSVYRHGLEEAPIDE 242 (329)
T ss_pred HHHHHhCC--CCc-hHHHHHHHHHHHHHhCCCCccchhh
Confidence 99998875 555 9999999999998877655666554
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.74 E-value=2.1e-16 Score=179.50 Aligned_cols=202 Identities=15% Similarity=0.212 Sum_probs=140.0
Q ss_pred CCcccCHHHHHHHHHHHHHHhcc-hhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--------
Q 009856 246 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-------- 313 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-------- 313 (523)
..|+|++.+...+...+...... ..+..|..++||+||||||||++|++||+.+ +.+++.++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 67999999999998877655443 3344566779999999999999999999987 45788887765422
Q ss_pred ------chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEE
Q 009856 314 ------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVL 379 (523)
Q Consensus 314 ------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~i 379 (523)
.+.+..+ .+..+.+..+++||||||+|++ ++.....|..++..-. -+.++++|
T Consensus 589 g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka---------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 589 GSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKA---------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred CCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhC---------CHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 1111112 2233335567899999999985 3344444444443210 13568999
Q ss_pred EEeeCCCC-------------------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 380 VLATNRPG-------------------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 380 I~ttn~~~-------------------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
|+|||... .+.|+|++|+|.+|.|.+.+.++...|+...+...
T Consensus 656 I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 656 IMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred EEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99998531 14578999999999999999999999999998875
Q ss_pred ccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH--CCCCCHHHHHHHHH
Q 009856 423 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMA 476 (523)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~ 476 (523)
.... ...++. -.+++++++.|+.. ...|..|.|+.++.
T Consensus 736 ~~rl---------------~~~~i~-l~~~~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 736 FKRL---------------NEQGIQ-LEVTERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred HHHH---------------HHCCcE-EEECHHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 3300 011122 24899999999886 33456778887774
No 111
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.9e-16 Score=172.17 Aligned_cols=211 Identities=18% Similarity=0.256 Sum_probs=149.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE----------EecC
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM----------MTGG 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~----------v~~~ 309 (523)
+.+.+|+++||++.+...|...+.. +.-+.++||+||||||||++|+.+|+.+.+.... -.|+
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 5577899999999999988775542 3334469999999999999999999999763100 0111
Q ss_pred --------------Ccccchh---hHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH
Q 009856 310 --------------DVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 369 (523)
Q Consensus 310 --------------~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 369 (523)
++..+.+ .....+..+...+ .......|+||||+|.|. ....+.|+..
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~naLLK~ 150 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFNAFLKT 150 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHHHHHHH
Confidence 1111111 1123333333332 233456799999999872 2346778888
Q ss_pred hCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhc
Q 009856 370 TGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449 (523)
Q Consensus 370 ~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (523)
++..+..++||++|+.+..+.+.+.+|+ .++.|..++.++....+...+.....
T Consensus 151 LEePp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi------------------------- 204 (620)
T PRK14954 151 LEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGI------------------------- 204 (620)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCC-------------------------
Confidence 8888888889988888889999999999 89999999999999988888876543
Q ss_pred cCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHc---CCCCccCHHHHHHHH
Q 009856 450 DLSDNVIQEAARKTEGFSGREIAKLMASVQA-AVYA---RPDCVLDSQLFREVV 499 (523)
Q Consensus 450 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~-a~~~---~~~~~it~e~~~~~l 499 (523)
.++++.++.|+..+.| +++.+.+.++. +.|. .....||.+++..++
T Consensus 205 ~I~~eal~~La~~s~G----dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 205 QIDADALQLIARKAQG----SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred CCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 4789999999999988 55555554443 3333 234678888887765
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.73 E-value=1.5e-16 Score=162.00 Aligned_cols=208 Identities=20% Similarity=0.310 Sum_probs=146.1
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-----CeeEEecCCcccch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-----~~~~v~~~~~~~~~ 315 (523)
.+.+|++++|++.+...+...+.. ...++++|+||||||||++++++++.+.. +++.+++++...
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~--------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~-- 81 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE--------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG-- 81 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc--
Confidence 346789999999998888776541 11235999999999999999999998732 344444433211
Q ss_pred hhHHHHHHHHHHHHHhc----CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcH
Q 009856 316 AQAVTKIHEIFDWAKKS----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~ 391 (523)
..... ..+...+... .++.+|+|||+|.+.. .....|..+ +...+.++.+|+++|.+..+.+
T Consensus 82 ~~~~~--~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------~~~~~L~~~---le~~~~~~~lIl~~~~~~~l~~ 147 (319)
T PRK00440 82 IDVIR--NKIKEFARTAPVGGAPFKIIFLDEADNLTS---------DAQQALRRT---MEMYSQNTRFILSCNYSSKIID 147 (319)
T ss_pred hHHHH--HHHHHHHhcCCCCCCCceEEEEeCcccCCH---------HHHHHHHHH---HhcCCCCCeEEEEeCCccccch
Confidence 11111 1111122111 2346999999998732 233334333 4444556788889998888889
Q ss_pred HHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHH
Q 009856 392 AITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 471 (523)
Q Consensus 392 al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI 471 (523)
++.+|+ .++.|++|+.++...++..++..... .++++.+..++..+.| |+
T Consensus 148 ~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~-------------------------~i~~~al~~l~~~~~g----d~ 197 (319)
T PRK00440 148 PIQSRC-AVFRFSPLKKEAVAERLRYIAENEGI-------------------------EITDDALEAIYYVSEG----DM 197 (319)
T ss_pred hHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CH
Confidence 999999 67999999999999999999886544 4789999999999888 78
Q ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 472 AKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 472 ~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
+.+++.++.++.. ...||.+++..++....+
T Consensus 198 r~~~~~l~~~~~~--~~~it~~~v~~~~~~~~~ 228 (319)
T PRK00440 198 RKAINALQAAAAT--GKEVTEEAVYKITGTARP 228 (319)
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHhCCCCH
Confidence 8888877766654 367899988887754433
No 113
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.73 E-value=5.8e-16 Score=173.46 Aligned_cols=230 Identities=20% Similarity=0.222 Sum_probs=149.4
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----------ch
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------~~ 315 (523)
.+.+|.+.+++++...+........ .+...++|+||||||||++++.+|..++.+|+.++.+.+.. +.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~--~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNK--IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhccc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccC
Confidence 4599999999999876654332221 22335999999999999999999999999999887665422 11
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH------------hCCCCCCEEEEEee
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR------------TGDQSRDIVLVLAT 383 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~------------~~~~~~~v~iI~tt 383 (523)
+...+.+...+..+.. .+.||||||+|++.+.... .....|..+++. +..+.++++||+|+
T Consensus 400 g~~~G~~~~~l~~~~~--~~~villDEidk~~~~~~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 400 GSMPGKLIQKMAKVGV--KNPLFLLDEIDKMSSDMRG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred CCCCcHHHHHHHhcCC--CCCEEEEEChhhcccccCC-----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 2222333333433322 2348999999998653221 112344444431 01134688999999
Q ss_pred CCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH-
Q 009856 384 NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK- 462 (523)
Q Consensus 384 n~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~- 462 (523)
|.. .++++|++|| .+|.|+.|+.++...|++.++........... +. .-.++++.+..|+..
T Consensus 473 N~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~--------------~~-~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 473 NSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALK--------------KG-ELTVDDSAIIGIIRYY 535 (784)
T ss_pred CCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCC--------------CC-eEEECHHHHHHHHHhC
Confidence 987 5999999999 78999999999999999999852211000000 00 114789999998753
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc----C-C--CCccCHHHHHHHHHH
Q 009856 463 TEGFSGREIAKLMASVQAAVYA----R-P--DCVLDSQLFREVVEY 501 (523)
Q Consensus 463 t~G~sgrdI~~L~~~~~~a~~~----~-~--~~~it~e~~~~~l~~ 501 (523)
+..+..|+|+..+..+...... . . .-.|+.+++.+.+..
T Consensus 536 t~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 536 TREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 4455667888777544433321 1 1 136788887776653
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.73 E-value=2.2e-16 Score=152.79 Aligned_cols=205 Identities=18% Similarity=0.251 Sum_probs=137.7
Q ss_pred ccccCCCccc--CHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccch
Q 009856 241 AIKNNGDIIL--HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig--~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~ 315 (523)
...+|++++. ...+...+..++. .....+++|+||||||||++|++++..+ +.+++++++..+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA--------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD 81 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh--------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH
Confidence 4567788884 2334444444322 2234579999999999999999999887 4678888876654211
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC-CCCC---cH
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PGDL---DS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~-~~~l---~~ 391 (523)
...+... ....+|||||++.+... ...+..+..++........ .+|+|++. +..+ .+
T Consensus 82 -------~~~~~~~---~~~~lLvIDdi~~l~~~-------~~~~~~L~~~l~~~~~~~~--~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 -------PEVLEGL---EQADLVCLDDVEAIAGQ-------PEWQEALFHLYNRVREAGG--RLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred -------HHHHhhc---ccCCEEEEeChhhhcCC-------hHHHHHHHHHHHHHHHcCC--eEEEECCCChHHCCcccH
Confidence 2222221 23469999999987321 1123445555544322222 45666653 3332 27
Q ss_pred HHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+.+||. .++.+++|+.+++..++..++.+... .++++.+..|+..+.| +++
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-------------------------~~~~~~l~~L~~~~~g-n~r 196 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL-------------------------QLPDEVADYLLRHGSR-DMG 196 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhccC-CHH
Confidence 8888874 68999999999999999887765433 4789999999998776 888
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++..++..+..++.. ....||.+.+.+++
T Consensus 197 ~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 197 SLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 888888877766655 34679999888875
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.73 E-value=3.6e-16 Score=151.67 Aligned_cols=203 Identities=17% Similarity=0.215 Sum_probs=137.4
Q ss_pred cccccCCCcccCH--HHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc
Q 009856 240 EAIKNNGDIILHP--SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL 314 (523)
Q Consensus 240 ~~~~~~~~vig~~--~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~ 314 (523)
.+..+|+++++.. .+...+..+.. ...+..+++|+||||||||++|+++++.+ +.+++++++.....
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~- 83 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL- 83 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-
Confidence 4557789988443 33333333222 12334569999999999999999999876 66778887765321
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC---CCcH
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---DLDS 391 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---~l~~ 391 (523)
.+. ....+.+|||||+|.+. ...+..|..++...... +..++|++++.+. .+.+
T Consensus 84 ----------~~~---~~~~~~~liiDdi~~l~---------~~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 84 ----------AFD---FDPEAELYAVDDVERLD---------DAQQIALFNLFNRVRAH-GQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred ----------HHh---hcccCCEEEEeChhhcC---------chHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHhCCCCH
Confidence 111 12235789999999862 23344555555444322 2333555554322 4568
Q ss_pred HHhccc--cceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITDRI--DEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~Rf--~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+.+|| ...+.+++|+.+++..++..++..... .++++.++.|+..+.| +.+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-------------------------~l~~~al~~L~~~~~g-n~~ 194 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL-------------------------QLADEVPDYLLTHFRR-DMP 194 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhccC-CHH
Confidence 888888 479999999999888888877665443 4899999999998887 777
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
++..++..+...+.. ....||...+.+++.
T Consensus 195 ~l~~~l~~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 195 SLMALLDALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCHHHHHHHHh
Confidence 777777776654544 347899999999875
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=1.6e-16 Score=167.32 Aligned_cols=225 Identities=16% Similarity=0.217 Sum_probs=147.5
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 312 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~ 312 (523)
...+..+|++++..+........+.....+ ++..+.+++||||||||||+|++++++.+ +..++++++.++.
T Consensus 102 ~l~~~~tfd~fi~g~~n~~a~~~~~~~~~~---~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCCCCCcccccccCCcHHHHHHHHHHHHhC---cCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 356788999966444444444333333322 22334569999999999999999999987 5667788776543
Q ss_pred c-chhhHH-HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCC--
Q 009856 313 P-LGAQAV-TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG-- 387 (523)
Q Consensus 313 ~-~~~~~~-~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~-- 387 (523)
. +..... +......... ....+|+|||++.+.++. ..+..+..++..+.... ..+|+|+| .|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~---~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~~~~~~--~~iiits~~~p~~l 246 (405)
T TIGR00362 179 NDFVNALRNNKMEEFKEKY---RSVDLLLIDDIQFLAGKE-------RTQEEFFHTFNALHENG--KQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHcCCHHHHHHHH---HhCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCC--CCEEEecCCCHHHH
Confidence 2 110000 0111111111 235699999999875421 22333444443332222 23555555 343
Q ss_pred -CCcHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCC
Q 009856 388 -DLDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 464 (523)
Q Consensus 388 -~l~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 464 (523)
.+++.+.+||. .++.|++|+.++|..|++..+..... .++++.++.||..+.
T Consensus 247 ~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~-------------------------~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 247 PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL-------------------------ELPDEVLEFIAKNIR 301 (405)
T ss_pred hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhcC
Confidence 46788999995 58999999999999999999887543 478999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 465 GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 465 G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
| ++|++..+++.+.+.+... ...||.+.+..++.....
T Consensus 302 ~-~~r~l~~~l~~l~~~a~~~-~~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 302 S-NVRELEGALNRLLAYASLT-GKPITLELAKEALKDLLR 339 (405)
T ss_pred C-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhcc
Confidence 7 7888888888777666543 356888888888887643
No 117
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-16 Score=168.20 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=161.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 354 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~ 354 (523)
..+||+|+||||||++++++|.++|.+++.++|..+.. ........+...|..++... |+||||-++|.|....+. +
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dg-g 509 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDG-G 509 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCC-c
Confidence 46999999999999999999999999999999988764 55667788899999998765 799999999998855444 2
Q ss_pred CcHHHHHHHHHHHHH-hC-CCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCc
Q 009856 355 MSEAQRSALNALLFR-TG-DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSS 432 (523)
Q Consensus 355 ~~~~~~~~l~~ll~~-~~-~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~ 432 (523)
..-.....+..++.. .. .....++||++++..+.+++.+++-|...|.++.|+.++|.+||+.|+.....
T Consensus 510 ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~-------- 581 (953)
T KOG0736|consen 510 EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL-------- 581 (953)
T ss_pred hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc--------
Confidence 233344555555541 11 34568899999999999999999999899999999999999999999987654
Q ss_pred hhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHHHcCC----------------CCccCH
Q 009856 433 LKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASV----QAAVYARP----------------DCVLDS 492 (523)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~----~~a~~~~~----------------~~~it~ 492 (523)
-.+..+..++.+|.|||.+|+..++..+ ..-....+ ...+++
T Consensus 582 ------------------n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ 643 (953)
T KOG0736|consen 582 ------------------NQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTE 643 (953)
T ss_pred ------------------chHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecH
Confidence 2455788899999999999999998533 11111111 247899
Q ss_pred HHHHHHHHHHHHhhh
Q 009856 493 QLFREVVEYKVEEHH 507 (523)
Q Consensus 493 e~~~~~l~~~~~~~~ 507 (523)
+||.+++++...++.
T Consensus 644 edf~kals~~~~~fs 658 (953)
T KOG0736|consen 644 EDFDKALSRLQKEFS 658 (953)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999997766654
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=3.7e-16 Score=164.97 Aligned_cols=226 Identities=13% Similarity=0.187 Sum_probs=144.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcch-hcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL 314 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~ 314 (523)
..+..+|++++..+........+.....+.. .++.++++++||||||+|||+|++++++.+ +..++++++..+...
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 5678899999965555544333322222221 222345679999999999999999999876 577777776543321
Q ss_pred hhhHHH-HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC-C---CCC
Q 009856 315 GAQAVT-KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-P---GDL 389 (523)
Q Consensus 315 ~~~~~~-~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~-~---~~l 389 (523)
...... .....|.. ......+|+|||++.+.++. ..+..+..++..+... + ..+|+|||. | ..+
T Consensus 184 ~~~~l~~~~~~~f~~--~~~~~dvLiIDDiq~l~~k~-------~~qeelf~l~N~l~~~-~-k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 184 LVSAIRSGEMQRFRQ--FYRNVDALFIEDIEVFSGKG-------ATQEEFFHTFNSLHTE-G-KLIVISSTCAPQDLKAM 252 (445)
T ss_pred HHHHHhcchHHHHHH--HcccCCEEEEcchhhhcCCh-------hhHHHHHHHHHHHHHC-C-CcEEEecCCCHHHHhhh
Confidence 111110 00112221 12345799999999874321 2233333333322212 2 246666654 4 357
Q ss_pred cHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 390 DSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 390 ~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
++.+.+||. .++.+++|+.+++..|++..+..... .++++.++.|+....|
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~-------------------------~l~~evl~~la~~~~~-- 305 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI-------------------------RIEETALDFLIEALSS-- 305 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhcCC--
Confidence 799999995 79999999999999999998876543 4899999999999877
Q ss_pred HHHHHHHHHHHHHH----HHc-CCCCccCHHHHHHHHHHHHH
Q 009856 468 GREIAKLMASVQAA----VYA-RPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 468 grdI~~L~~~~~~a----~~~-~~~~~it~e~~~~~l~~~~~ 504 (523)
|++.|..++... ++. -....+|.+++.+++.+.+.
T Consensus 306 --dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 306 --NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred --CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 555555544443 232 12357899999999988754
No 119
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.6e-15 Score=157.64 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=121.6
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----------ch
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------~~ 315 (523)
++-+|.+.+++++..++.-..-.. ....+-+.|+||||+|||++++.||..+|+.|+.++-+.+.. +.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYV 488 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYV 488 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeee
Confidence 678899999999988765433211 122235889999999999999999999999999987554322 33
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHH-----HHHHHhC---CCCCCEEEEEeeCCCC
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN-----ALLFRTG---DQSRDIVLVLATNRPG 387 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~-----~ll~~~~---~~~~~v~iI~ttn~~~ 387 (523)
+...+.+-..+......+ | +++|||+|++++...+ ..+.....+|. .|++.+- .+-.+++||+|+|..+
T Consensus 489 GAMPGkiIq~LK~v~t~N-P-liLiDEvDKlG~g~qG-DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id 565 (906)
T KOG2004|consen 489 GAMPGKIIQCLKKVKTEN-P-LILIDEVDKLGSGHQG-DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID 565 (906)
T ss_pred ccCChHHHHHHHhhCCCC-c-eEEeehhhhhCCCCCC-ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc
Confidence 455566666666655444 3 7889999999843222 11111111111 1222211 2345789999999999
Q ss_pred CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 388 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 388 ~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
.++++|++|+ ++|.++-|..+|...|.+.||-..
T Consensus 566 tIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~ 599 (906)
T KOG2004|consen 566 TIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQ 599 (906)
T ss_pred cCChhhhhhh-heeeccCccHHHHHHHHHHhhhhH
Confidence 9999999999 999999999999999999998543
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=4.4e-16 Score=170.23 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=147.2
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE----EecC------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM----MTGG------ 309 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~----v~~~------ 309 (523)
.....|++++|++.+...|...+.. +.-..++||+||||||||++|+++|+.+++.... ..|+
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~-------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS-------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 3457899999999999998877653 2223479999999999999999999998763110 0111
Q ss_pred --------Cccc---chhhHHHHHHHHHHHHHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 009856 310 --------DVAP---LGAQAVTKIHEIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 375 (523)
Q Consensus 310 --------~~~~---~~~~~~~~l~~~f~~a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 375 (523)
++.. ........++.++..+... ..+.|+||||+|.|. ....+.|+..++..+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LEePp~ 150 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLEEPPP 150 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHhcCCc
Confidence 1111 1112344556666554322 346799999999862 2456777888888888
Q ss_pred CEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 376 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 376 ~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
.++||++|+.+..+.+.+++|| ..+.|+.++.++....+...+.+... .++++.
T Consensus 151 ~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi-------------------------~is~~a 204 (620)
T PRK14948 151 RVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESI-------------------------EIEPEA 204 (620)
T ss_pred CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCC-------------------------CCCHHH
Confidence 8999999998999999999999 88999999999888888887776443 477888
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREV 498 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~ 498 (523)
+..|+..+.| +++.+++.++...... ..||.+++...
T Consensus 205 l~~La~~s~G----~lr~A~~lLeklsL~~--~~It~e~V~~l 241 (620)
T PRK14948 205 LTLVAQRSQG----GLRDAESLLDQLSLLP--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHhcc--CCCCHHHHHHH
Confidence 9999999988 4444444444332222 35776666544
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.2e-16 Score=163.89 Aligned_cols=161 Identities=22% Similarity=0.282 Sum_probs=114.0
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcc-h-hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE---------------
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANT-K-IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--------------- 305 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~-~-~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~--------------- 305 (523)
..|++|+|++.+++.|...+..-... . .+...++++||+||||+|||++|+++|..+.+....
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 35799999999999999888753321 1 112245679999999999999999999987543100
Q ss_pred EecCCcccc----hhhHHHHHHHHHHHHHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 009856 306 MTGGDVAPL----GAQAVTKIHEIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 378 (523)
Q Consensus 306 v~~~~~~~~----~~~~~~~l~~~f~~a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~ 378 (523)
-+.+++..+ ..-....++.++..+... .++.|+||||+|.+.. ...+.|+..++.++.+++
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVEEPPPRTV 149 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhhcCCCCCe
Confidence 001111000 011234456666665432 3457999999999732 234667777787788888
Q ss_pred EEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHH
Q 009856 379 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLK 416 (523)
Q Consensus 379 iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~ 416 (523)
||++|+.++.+.|.++||| ..+.|++|+.++...++.
T Consensus 150 fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 9988888999999999999 899999999998777665
No 122
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=4.6e-16 Score=166.94 Aligned_cols=226 Identities=14% Similarity=0.189 Sum_probs=150.7
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 312 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~ 312 (523)
...+..+|+++|..+...-.+..+.....+. +..++.++|||++|||||+|+++|++.+ +..++++++.++.
T Consensus 280 ~L~~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred CCCCCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 3557889999997666553433333322222 1223349999999999999999999986 4567778776654
Q ss_pred c-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC----C
Q 009856 313 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP----G 387 (523)
Q Consensus 313 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~----~ 387 (523)
. +...........|.. ......+|+|||++.+..+. ..+..|..++..+....+ .||+|||.+ .
T Consensus 357 ~el~~al~~~~~~~f~~--~y~~~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l~e~gk--~IIITSd~~P~eL~ 425 (617)
T PRK14086 357 NEFINSIRDGKGDSFRR--RYREMDILLVDDIQFLEDKE-------STQEEFFHTFNTLHNANK--QIVLSSDRPPKQLV 425 (617)
T ss_pred HHHHHHHHhccHHHHHH--HhhcCCEEEEehhccccCCH-------HHHHHHHHHHHHHHhcCC--CEEEecCCChHhhh
Confidence 2 211111111112221 23346799999999875422 223334444444332222 355677654 3
Q ss_pred CCcHHHhccc--cceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 388 DLDSAITDRI--DEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 388 ~l~~al~~Rf--~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
.+++.|.+|| ..++.+..|+.+.|..||+..+..... .++++++..|+.+..+
T Consensus 426 ~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l-------------------------~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL-------------------------NAPPEVLEFIASRISR 480 (617)
T ss_pred hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHhccC
Confidence 5789999998 478899999999999999999876544 5899999999999877
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
+.++|..+++.+.+.+... ...||.+.+..++++...
T Consensus 481 -nvR~LegaL~rL~a~a~~~-~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 481 -NIRELEGALIRVTAFASLN-RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred -CHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhc
Confidence 7778888887776555443 356888888888887654
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=4.6e-16 Score=170.35 Aligned_cols=209 Identities=18% Similarity=0.216 Sum_probs=146.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY---------------- 303 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~---------------- 303 (523)
+.+.+|++|||++.++..|...+.. +..+..+|||||||+|||++|+.+|+.+++..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 4567899999999999988776653 22334589999999999999999999986422
Q ss_pred ---------eEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCC
Q 009856 304 ---------AMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 374 (523)
Q Consensus 304 ---------~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 374 (523)
+.++++ ...+.+....+...+........+.||||||+|.|. ...++.|+..++...
T Consensus 83 i~~~~~~d~~~i~~~--~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLLk~LEepp 148 (585)
T PRK14950 83 IAEGSAVDVIEMDAA--SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALLKTLEEPP 148 (585)
T ss_pred HhcCCCCeEEEEecc--ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHHHHHhcCC
Confidence 111111 011122222222222221122346799999999862 234667777777777
Q ss_pred CCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 375 RDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 375 ~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
.+++||++++..+.+.+.+.+|+ ..+.|+.++..+...++..++..... .++++
T Consensus 149 ~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl-------------------------~i~~e 202 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGI-------------------------NLEPG 202 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHH
Confidence 78899999988888999999999 78999999999999999888876544 47888
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 455 VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 455 ~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.+..|+..+.| +.+++.+++..+ +.|. ...||.+++..++.
T Consensus 203 al~~La~~s~G-dlr~al~~LekL--~~y~--~~~It~e~V~~ll~ 243 (585)
T PRK14950 203 ALEAIARAATG-SMRDAENLLQQL--ATTY--GGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHH--HHhc--CCCCCHHHHHHHhc
Confidence 99999999987 555555555533 2232 35789888876544
No 124
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.71 E-value=2.2e-15 Score=156.59 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=147.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC---------CCeeEEecCC
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---------LDYAMMTGGD 310 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~---------~~~~~v~~~~ 310 (523)
.+....+.++|.+.-.+.|...+..... +..+.+++|+||||||||++++++++.+. .++++++|..
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILR----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3444457899998888888776654332 23345799999999999999999998763 4678888865
Q ss_pred cccch---h------------------hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH
Q 009856 311 VAPLG---A------------------QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 369 (523)
Q Consensus 311 ~~~~~---~------------------~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 369 (523)
..... . .....+..++.......++.||+|||+|.+... ....+..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------~~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------DDDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------CcHHHHhHhcc
Confidence 43210 0 011122334444444455689999999998621 12345555543
Q ss_pred --hC-CCCCCEEEEEeeCCCC---CCcHHHhcccc-ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhh
Q 009856 370 --TG-DQSRDIVLVLATNRPG---DLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ 442 (523)
Q Consensus 370 --~~-~~~~~v~iI~ttn~~~---~l~~al~~Rf~-~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 442 (523)
.. ....++.+|+++|.++ .+++.+.+||. ..+.|++|+.+++..|+...+..... .
T Consensus 156 ~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~---~-------------- 218 (365)
T TIGR02928 156 RSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFY---D-------------- 218 (365)
T ss_pred ccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhcc---C--------------
Confidence 12 2235788999998875 58889999985 67999999999999999998863211 0
Q ss_pred hhhhhhccCCHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHH---HcCCCCccCHHHHHHHHHHHH
Q 009856 443 QQKITIKDLSDNVIQEAA---RKTEGFSGREIAKLMASVQAAV---YARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 443 ~~~~~~~~~~~~~l~~la---~~t~G~sgrdI~~L~~~~~~a~---~~~~~~~it~e~~~~~l~~~~ 503 (523)
..++++.+..++ ..+.| |++.+++.+..++ ...+...||.+++..+++...
T Consensus 219 ------~~~~~~~l~~i~~~~~~~~G----d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 219 ------GVLDDGVIPLCAALAAQEHG----DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred ------CCCChhHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 025666655554 44556 5666555444433 334456899999999887764
No 125
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.71 E-value=1.8e-15 Score=158.89 Aligned_cols=228 Identities=17% Similarity=0.180 Sum_probs=150.4
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcccc--
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPL-- 314 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~-- 314 (523)
....+.++|.+.-.+.+...+..... +..+.+++|+||||||||++++.+++.+ +..+++++|......
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~----~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR----GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 33447788888777777666543222 2334569999999999999999999887 467888888653220
Q ss_pred -----------------hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC-CCCC
Q 009856 315 -----------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-QSRD 376 (523)
Q Consensus 315 -----------------~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-~~~~ 376 (523)
+......+..+.........+.||+|||+|.+.... ....+..++..... ...+
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--------~~~~l~~l~~~~~~~~~~~ 173 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--------GNDVLYSLLRAHEEYPGAR 173 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--------CchHHHHHHHhhhccCCCe
Confidence 001111223333333334456899999999986211 12345555544332 2237
Q ss_pred EEEEEeeCCCC---CCcHHHhcccc-ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 377 IVLVLATNRPG---DLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 377 v~iI~ttn~~~---~l~~al~~Rf~-~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
+.+|+++|..+ .+++.+.+||. ..|.|++|+.++...|+...+..... ...++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~-----------------------~~~~~ 230 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY-----------------------PGVVD 230 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc-----------------------cCCCC
Confidence 88899888653 57888888874 57899999999999999988754211 01368
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHcCCCCccCHHHHHHHHHHHHHh
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAA---VYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a---~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
++.++.++..+.+.+| |++.++..+..+ +...+...||.+++..+++...+.
T Consensus 231 ~~~l~~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 231 DEVLDLIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred HhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence 8889999888754444 777666555443 333455789999999999887443
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=5.9e-16 Score=172.18 Aligned_cols=226 Identities=15% Similarity=0.177 Sum_probs=154.3
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...++.++|.+.....+..++.. ....++||+||||||||++|+++|..+ ++.++.++.+.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r--------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~l 253 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHH
Confidence 44568899998888877765543 122458999999999999999999875 333444333222
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. .+.++....+..+|..+.... ++||||||+|.+++.+...+......+.|..++ ..+.+.+|++|+.++
T Consensus 254 laG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-----~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 LAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-----SSGKIRVIGSTTYQEF 327 (758)
T ss_pred hcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-----hCCCeEEEecCChHHH
Confidence 1 133456667788888776544 679999999999876543222223334455544 356799999998764
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
..|++|.+|| ..|.++.|+.+++..||+.+..++.. ..+ ..++++.+..++..+
T Consensus 328 ~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~------------------~h~---v~i~~~al~~a~~ls 385 (758)
T PRK11034 328 SNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA------------------HHD---VRYTAKAVRAAVELA 385 (758)
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhh------------------ccC---CCcCHHHHHHHHHHh
Confidence 5799999999 58999999999999999998777654 111 147788887766554
Q ss_pred CC-----CCHHHHHHHHHHHHHHHHcC----CCCccCHHHHHHHHHHHH
Q 009856 464 EG-----FSGREIAKLMASVQAAVYAR----PDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 464 ~G-----~sgrdI~~L~~~~~~a~~~~----~~~~it~e~~~~~l~~~~ 503 (523)
.. +-|.....+++.+.+.+... ....++.+++..++....
T Consensus 386 ~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred hccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 33 34446666776555443221 124588888888887654
No 127
>PRK06620 hypothetical protein; Validated
Probab=99.70 E-value=9.4e-16 Score=146.90 Aligned_cols=200 Identities=16% Similarity=0.180 Sum_probs=132.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCC-CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhh
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ 317 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p-~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~ 317 (523)
..+..+|+++|..+.....+..+........ ..| .++++||||||||||+++++++...+..++ +....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~--~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~------ 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGFG--VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF------ 78 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHccc--cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh------
Confidence 3567789999988876666655554433211 223 267999999999999999999988765332 11110
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCC--CcHHHhc
Q 009856 318 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD--LDSAITD 395 (523)
Q Consensus 318 ~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~--l~~al~~ 395 (523)
....+ ....+|+|||++.+ ....+..++..+... +..+||.++..|.. + |.++|
T Consensus 79 ----~~~~~------~~~d~lliDdi~~~------------~~~~lf~l~N~~~e~-g~~ilits~~~p~~l~l-~~L~S 134 (214)
T PRK06620 79 ----NEEIL------EKYNAFIIEDIENW------------QEPALLHIFNIINEK-QKYLLLTSSDKSRNFTL-PDLSS 134 (214)
T ss_pred ----chhHH------hcCCEEEEeccccc------------hHHHHHHHHHHHHhc-CCEEEEEcCCCccccch-HHHHH
Confidence 00111 12468999999954 112344444443323 33455555544443 5 88999
Q ss_pred ccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHH
Q 009856 396 RID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 473 (523)
Q Consensus 396 Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 473 (523)
|+. .++.+.+|+.+++..++...+..... .+++++++.|+.++.| +.|.+..
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l-------------------------~l~~ev~~~L~~~~~~-d~r~l~~ 188 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSV-------------------------TISRQIIDFLLVNLPR-EYSKIIE 188 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHccC-CHHHHHH
Confidence 984 38999999999999999988875433 4799999999999988 6666666
Q ss_pred HHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 474 LMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 474 L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+++.+...+... ...||...+.+++
T Consensus 189 ~l~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 189 ILENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHh
Confidence 666655444433 3579999888875
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1e-15 Score=167.36 Aligned_cols=204 Identities=17% Similarity=0.232 Sum_probs=149.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++|||++.+...|...+.. +..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 3457899999999999988776652 3344569999999999999999999988642
Q ss_pred --------eeEEecCCcccchhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 303 --------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 303 --------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
++.++++. ......+..+...+.. ...+.|+||||+|.|. ....+.|+..++
T Consensus 84 ~~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLLK~LE 146 (614)
T PRK14971 84 FNEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFLKTLE 146 (614)
T ss_pred HhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHHHHHh
Confidence 22222211 1113344455444332 2245799999999872 245677777788
Q ss_pred CCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccC
Q 009856 372 DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 451 (523)
Q Consensus 372 ~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (523)
..+..++||++|+.+..+.+.|++|| .++.|.+++.++....+...+..... .+
T Consensus 147 epp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi-------------------------~i 200 (614)
T PRK14971 147 EPPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGI-------------------------TA 200 (614)
T ss_pred CCCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCC-------------------------CC
Confidence 78888999999988899999999999 88999999999999999988877654 47
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHcCCCCccCHHHHHHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQAA-VYARPDCVLDSQLFREVV 499 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~~a-~~~~~~~~it~e~~~~~l 499 (523)
+++.+..|+..+.| |++.+++.++.. .|. ++. ||.+++...+
T Consensus 201 ~~~al~~La~~s~g----dlr~al~~Lekl~~y~-~~~-It~~~V~~~l 243 (614)
T PRK14971 201 EPEALNVIAQKADG----GMRDALSIFDQVVSFT-GGN-ITYKSVIENL 243 (614)
T ss_pred CHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc-cCC-ccHHHHHHHh
Confidence 88899999999987 666666665543 343 223 7776665554
No 129
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.70 E-value=3.3e-16 Score=159.74 Aligned_cols=214 Identities=17% Similarity=0.196 Sum_probs=144.5
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQA 318 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~ 318 (523)
-|+++||.+.....+.+.+..+.....+ |||+|++||||+++|++|+..+ +.||+.++|+.+.. +....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~p------VlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKP------VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCC------EEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 3578999999888888887777654333 9999999999999999999876 46899999998643 11111
Q ss_pred HHHHHHHHHHH-------HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEee
Q 009856 319 VTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLAT 383 (523)
Q Consensus 319 ~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~tt 383 (523)
++.....|..+ .....++.|||||++.| +...+..|..+++.-. . ...++.||+||
T Consensus 78 fg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s 148 (326)
T PRK11608 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCAT 148 (326)
T ss_pred ccccccccCCcccccCCchhccCCCeEEeCChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeC
Confidence 11111111100 02234678999999997 5567777777775421 1 12368899988
Q ss_pred CCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhh-hccC
Q 009856 384 NRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT-IKDL 451 (523)
Q Consensus 384 n~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 451 (523)
+.. ..+.+.|..|| ..+.+..|+..+|.. ++.+|+..+.. ..+.. +..+
T Consensus 149 ~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~------------------~~~~~~~~~~ 209 (326)
T PRK11608 149 NADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCR------------------ELGLPLFPGF 209 (326)
T ss_pred chhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHH------------------HhCCCCCCCC
Confidence 753 46778888898 445566666655544 77777766432 11112 1358
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~ 494 (523)
+++.+..|..+. |+| ||++|.+.++.++..+..+.++.++
T Consensus 210 s~~al~~L~~y~--WPG-NvrEL~~vl~~a~~~~~~~~~~~~~ 249 (326)
T PRK11608 210 TERARETLLNYR--WPG-NIRELKNVVERSVYRHGTSEYPLDN 249 (326)
T ss_pred CHHHHHHHHhCC--CCc-HHHHHHHHHHHHHHhcCCCCCchhh
Confidence 999999998774 555 9999999999988876555554443
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=9e-16 Score=162.39 Aligned_cols=225 Identities=16% Similarity=0.218 Sum_probs=146.2
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 312 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~ 312 (523)
...+..+|++++..+.....+..+.....++ + .+.+++||||||||||+|++++++.+ +..++++++.++.
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~---~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~ 172 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKNP---G-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHHhCc---C-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 3567889999996666555544443333221 1 24569999999999999999999986 3456777776543
Q ss_pred cchhhHH--HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee-CCCCC-
Q 009856 313 PLGAQAV--TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT-NRPGD- 388 (523)
Q Consensus 313 ~~~~~~~--~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt-n~~~~- 388 (523)
....... +.+.. |..... ..+.+|+|||++.+.+.. ..+..+..++..+... +. .+|+|| +.|..
T Consensus 173 ~~~~~~~~~~~~~~-f~~~~~-~~~dvLlIDDi~~l~~~~-------~~q~elf~~~n~l~~~-~k-~iIitsd~~p~~l 241 (440)
T PRK14088 173 NDLVDSMKEGKLNE-FREKYR-KKVDVLLIDDVQFLIGKT-------GVQTELFHTFNELHDS-GK-QIVICSDREPQKL 241 (440)
T ss_pred HHHHHHHhcccHHH-HHHHHH-hcCCEEEEechhhhcCcH-------HHHHHHHHHHHHHHHc-CC-eEEEECCCCHHHH
Confidence 2111111 11111 211111 135799999999875421 1222333333332222 22 355555 45443
Q ss_pred --CcHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCC
Q 009856 389 --LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 464 (523)
Q Consensus 389 --l~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 464 (523)
+.+.+.|||. .++.|.+|+.+.|..|++..+..... .++++.++.||....
T Consensus 242 ~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~-------------------------~l~~ev~~~Ia~~~~ 296 (440)
T PRK14088 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG-------------------------ELPEEVLNFVAENVD 296 (440)
T ss_pred HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHhccc
Confidence 5678889984 58899999999999999998875433 478999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 465 GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 465 G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
| +.|+|..+++.+.+.+... ...+|.+.+.+++.+.+.
T Consensus 297 ~-~~R~L~g~l~~l~~~~~~~-~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 297 D-NLRRLRGAIIKLLVYKETT-GEEVDLKEAILLLKDFIK 334 (440)
T ss_pred c-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhc
Confidence 7 7778888887776555443 356888888888887643
No 131
>PRK08727 hypothetical protein; Validated
Probab=99.69 E-value=2.7e-15 Score=145.99 Aligned_cols=206 Identities=19% Similarity=0.225 Sum_probs=133.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
.+..+|+++++.+.. .+..+..... +.....++|+||||||||+++++++..+ |....+++..+.
T Consensus 13 ~~~~~f~~f~~~~~n--~~~~~~~~~~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~----- 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDG--LLAQLQALAA-----GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA----- 80 (233)
T ss_pred CCcCChhhccCCcHH--HHHHHHHHHh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh-----
Confidence 455688998877653 2222221111 1222349999999999999999998775 455555554321
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCCC---CcHH
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD---LDSA 392 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~~---l~~a 392 (523)
...+...+... ....+|+|||++.+.... .....+..++...... +..+|+|+| .|.. +.+.
T Consensus 81 --~~~~~~~~~~l---~~~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~~--~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 81 --AGRLRDALEAL---EGRSLVALDGLESIAGQR-------EDEVALFDFHNRARAA--GITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred --hhhHHHHHHHH---hcCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHc--CCeEEEECCCChhhhhhhhHH
Confidence 12233333332 235699999999874321 2233444455443222 334666665 4554 4799
Q ss_pred Hhccc--cceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 393 ITDRI--DEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 393 l~~Rf--~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+.||| ..++.|++|+.+++..|++.++..... .++++.++.|+..+.| |
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-------------------------~l~~e~~~~La~~~~r----d 197 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-------------------------ALDEAAIDWLLTHGER----E 197 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhCCC----C
Confidence 99996 478999999999999999987765332 4799999999999887 6
Q ss_pred HHHHHHHHHHH---HHcCCCCccCHHHHHHHHHH
Q 009856 471 IAKLMASVQAA---VYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 471 I~~L~~~~~~a---~~~~~~~~it~e~~~~~l~~ 501 (523)
++.+++.++.. +.. ....||.+.+.+++..
T Consensus 198 ~r~~l~~L~~l~~~~~~-~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 198 LAGLVALLDRLDRESLA-AKRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHhh
Confidence 66665444433 333 2457999999988753
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=2.4e-15 Score=170.28 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=136.6
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC----------CCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----------LDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~----------~~~~~v~~~~~ 311 (523)
...++.+||.++...++..+.. . ....+++|+||||||||++|+.+|..+. ..++.++.+.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~---r-----~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL---R-----RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh---c-----CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 4577999999887555544332 1 1223689999999999999999999872 34555655544
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. .+.++....+..+|..+.....++||||||++.+.+.+++.+ .......|...+ ..+.+.+|+||+..+
T Consensus 255 ~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d~~n~Lkp~l-----~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 255 QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGDAANLLKPAL-----ARGELRTIAATTWAEY 328 (852)
T ss_pred hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-cccHHHHhhHHh-----hCCCeEEEEecCHHHH
Confidence 3 255677788999999887655678999999999987554322 111122333333 356789999997643
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
..+++|.+|| ..|.++.|+.++...||+.+...+.. ..+ ..++++++..++..+
T Consensus 329 ~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~------------------~~~---v~i~d~al~~~~~ls 386 (852)
T TIGR03345 329 KKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEK------------------HHG---VLILDEAVVAAVELS 386 (852)
T ss_pred hhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhh------------------cCC---CeeCHHHHHHHHHHc
Confidence 5899999999 68999999999999998777665432 011 147888899888888
Q ss_pred CCCCH
Q 009856 464 EGFSG 468 (523)
Q Consensus 464 ~G~sg 468 (523)
.+|.+
T Consensus 387 ~ryi~ 391 (852)
T TIGR03345 387 HRYIP 391 (852)
T ss_pred ccccc
Confidence 77644
No 133
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=2e-15 Score=159.88 Aligned_cols=225 Identities=13% Similarity=0.225 Sum_probs=147.3
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcccchh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~~~ 316 (523)
..+|++++..+....++..+.....+ ++.++++++||||+|||||+|++++++.+ +..++++++.++.....
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~---~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKN---PGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhC---cCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 47899998766554444333222222 23344569999999999999999999965 35667777765543211
Q ss_pred hHHHHH-HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC-C---CCcH
Q 009856 317 QAVTKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-G---DLDS 391 (523)
Q Consensus 317 ~~~~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~-~---~l~~ 391 (523)
...... ..+...........+|+|||++.+..+ ...+..|..++.......+ .+|+|+|.+ . .+++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k-------~~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 188 DILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK-------EKTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHHHHhhhHHHHHHHHhccCCEEEEeccccccCC-------HHHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccH
Confidence 111110 111111122334679999999987432 2334445555544432222 467777653 2 4678
Q ss_pred HHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+.+||. .++.+.+|+.+++..|++..+..... . ..++++.+..|+..+.| ++|
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl----------------------~-~~l~~evl~~Ia~~~~g-d~R 314 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI----------------------K-QEVTEEAINFISNYYSD-DVR 314 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC----------------------C-CCCCHHHHHHHHHccCC-CHH
Confidence 9999984 78899999999999999999875421 0 03799999999999988 777
Q ss_pred HHHHHHHHHHHHHHcCC-CCccCHHHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARP-DCVLDSQLFREVVEYK 502 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~-~~~it~e~~~~~l~~~ 502 (523)
.+..+++.+...++... ...||.+.+..++.+.
T Consensus 315 ~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 315 KIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 77777776665555542 3679999999988875
No 134
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.69 E-value=1.9e-16 Score=172.50 Aligned_cols=218 Identities=21% Similarity=0.270 Sum_probs=152.3
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc--h
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--G 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~--~ 315 (523)
....|+.+||.+.....+...+..+..... +|||+|++|||||++|++|+..+ +.||+.++|+.+... .
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~ 264 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNS------TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLE 264 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHH
Confidence 446889999999999888887777664433 39999999999999999999886 579999999887531 1
Q ss_pred hhHHHHHHHHHHHH-------HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEE
Q 009856 316 AQAVTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLV 380 (523)
Q Consensus 316 ~~~~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI 380 (523)
...++.....|..+ .....+++|||||++.| +...+..|..+++.-. . ...++.||
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI---------SPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC---------CHHHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 11111111112111 01234679999999987 5567777777775421 1 11268899
Q ss_pred EeeCCC-------CCCcHHHhccccceEeecCCCH----HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhc
Q 009856 381 LATNRP-------GDLDSAITDRIDEVIEFPLPRE----EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449 (523)
Q Consensus 381 ~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~----~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (523)
+||+.. ..+.+.|..|+ ..+.+..|+. ++...|+.+|+..+.. ..+.. .
T Consensus 336 ~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~------------------~~~~~-~ 395 (534)
T TIGR01817 336 AATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNR------------------ENGRP-L 395 (534)
T ss_pred EeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHH------------------HcCCC-C
Confidence 998753 35777888888 3444444444 4555688888876543 11112 2
Q ss_pred cCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 009856 450 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFR 496 (523)
Q Consensus 450 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~ 496 (523)
.++++.+..|..+. |+| |++.|.+.++.++..+.+..|+.+++.
T Consensus 396 ~~s~~a~~~L~~~~--WPG-NvrEL~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 396 TITPSAIRVLMSCK--WPG-NVRELENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred CCCHHHHHHHHhCC--CCC-hHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 58999999998874 555 999999999999988888899998875
No 135
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.68 E-value=1.3e-15 Score=146.60 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=123.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPL 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~ 314 (523)
.+..+|+++|..+.....+..+..-..++ +.....++||||+|+|||+|.+++++.+ +..++++++.++...
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 46789999986655555544333322332 2233459999999999999999999875 455777766554321
Q ss_pred hhhHHH--HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee-CCCC---C
Q 009856 315 GAQAVT--KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT-NRPG---D 388 (523)
Q Consensus 315 ~~~~~~--~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt-n~~~---~ 388 (523)
..+... .+..+. .......+|+||+++.+..+ ...+..+..++..+.... + .+|+|+ ..|. .
T Consensus 79 ~~~~~~~~~~~~~~---~~~~~~DlL~iDDi~~l~~~-------~~~q~~lf~l~n~~~~~~-k-~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 79 FADALRDGEIEEFK---DRLRSADLLIIDDIQFLAGK-------QRTQEELFHLFNRLIESG-K-QLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHTTSHHHHH---HHHCTSSEEEEETGGGGTTH-------HHHHHHHHHHHHHHHHTT-S-EEEEEESS-TTTTTT
T ss_pred HHHHHHcccchhhh---hhhhcCCEEEEecchhhcCc-------hHHHHHHHHHHHHHHhhC-C-eEEEEeCCCCccccc
Confidence 111111 111111 12334679999999998542 233555555555543332 3 355555 4444 4
Q ss_pred CcHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+++.+.+||. .++.+.+|+.+.|..|++.++..... .++++.+..|+....+
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-------------------------~l~~~v~~~l~~~~~~- 200 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-------------------------ELPEEVIEYLARRFRR- 200 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---------------------------S-HHHHHHHHHHTTS-
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-------------------------CCcHHHHHHHHHhhcC-
Confidence 6789999975 58999999999999999999987665 4899999999999877
Q ss_pred CHHHHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAA 481 (523)
Q Consensus 467 sgrdI~~L~~~~~~a 481 (523)
+.++|..+++.+.+.
T Consensus 201 ~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 201 DVRELEGALNRLDAY 215 (219)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777765544
No 136
>PRK05642 DNA replication initiation factor; Validated
Probab=99.68 E-value=4.4e-15 Score=144.48 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=136.6
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccch
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG 315 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~ 315 (523)
..+..+|++++..+. ......+...... ....+.++++||||+|||||+|++++++.+ +..+++++..++...
T Consensus 12 ~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~- 87 (234)
T PRK05642 12 LRDDATFANYYPGAN--AAALGYVERLCEA-DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR- 87 (234)
T ss_pred CCCcccccccCcCCh--HHHHHHHHHHhhc-cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-
Confidence 356678999985432 2222222221111 112234569999999999999999998765 566677766544321
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCC---CCcH
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG---DLDS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~---~l~~ 391 (523)
...+..... ...+|+|||++.+.++ ......|..++...... +.. +|+|++ .|. ...|
T Consensus 88 ------~~~~~~~~~---~~d~LiiDDi~~~~~~-------~~~~~~Lf~l~n~~~~~-g~~-ilits~~~p~~l~~~~~ 149 (234)
T PRK05642 88 ------GPELLDNLE---QYELVCLDDLDVIAGK-------ADWEEALFHLFNRLRDS-GRR-LLLAASKSPRELPIKLP 149 (234)
T ss_pred ------hHHHHHhhh---hCCEEEEechhhhcCC-------hHHHHHHHHHHHHHHhc-CCE-EEEeCCCCHHHcCccCc
Confidence 112222222 2458999999986432 12234455555443222 233 444444 443 3468
Q ss_pred HHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+.|||. .++.+.+|+.+++..+++..+..... .++++.++.|+.+..| ++|
T Consensus 150 ~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~-------------------------~l~~ev~~~L~~~~~~-d~r 203 (234)
T PRK05642 150 DLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL-------------------------HLTDEVGHFILTRGTR-SMS 203 (234)
T ss_pred cHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhcCC-CHH
Confidence 9999984 78889999999999999976554322 4789999999999988 777
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.+..+++.+..++.. ....||...+++++.
T Consensus 204 ~l~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 204 ALFDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 777777777665554 336689999888764
No 137
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.67 E-value=7.4e-16 Score=143.29 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=144.0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-CC----CeeEEecCCcccch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-GL----DYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-~~----~~~~v~~~~~~~~~ 315 (523)
.+..+.++||.+...+++..++.. ...++++|.|||||||||-+.++|+.+ |. .+..+|.++- -|
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~--------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde--RG 91 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE--------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE--RG 91 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc--------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc--cc
Confidence 344568999999999999877652 233479999999999999999999987 32 2455666653 34
Q ss_pred hhHHHHHHHHHHHHHhcC---CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHH
Q 009856 316 AQAVTKIHEIFDWAKKSK---KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA 392 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~---~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~a 392 (523)
.+.+.+--..|..-+-.- +..|++|||+|++ ....+..+...+... ++.+.|.++||....+-..
T Consensus 92 IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM---------T~gAQQAlRRtMEiy---S~ttRFalaCN~s~KIiEP 159 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM---------TAGAQQALRRTMEIY---SNTTRFALACNQSEKIIEP 159 (333)
T ss_pred cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh---------hhHHHHHHHHHHHHH---cccchhhhhhcchhhhhhh
Confidence 455666566665443322 2358999999987 446677777777664 4455799999999999999
Q ss_pred HhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHH
Q 009856 393 ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 472 (523)
Q Consensus 393 l~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 472 (523)
+.||| -.+.|...+..+...-+....+.... .++++.++.|.-..+| |++
T Consensus 160 IQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv-------------------------~yt~dgLeaiifta~G----DMR 209 (333)
T KOG0991|consen 160 IQSRC-AILRYSKLSDQQILKRLLEVAKAEKV-------------------------NYTDDGLEAIIFTAQG----DMR 209 (333)
T ss_pred HHhhh-HhhhhcccCHHHHHHHHHHHHHHhCC-------------------------CCCcchHHHhhhhccc----hHH
Confidence 99999 78888888887766655555444333 4788899999999999 999
Q ss_pred HHHHHHHHHHHc
Q 009856 473 KLMASVQAAVYA 484 (523)
Q Consensus 473 ~L~~~~~~a~~~ 484 (523)
+.+|.+++.+.+
T Consensus 210 QalNnLQst~~g 221 (333)
T KOG0991|consen 210 QALNNLQSTVNG 221 (333)
T ss_pred HHHHHHHHHhcc
Confidence 999999988854
No 138
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.67 E-value=6.5e-16 Score=167.02 Aligned_cols=215 Identities=18% Similarity=0.280 Sum_probs=150.5
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc--
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL-- 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~-- 314 (523)
....+|++++|.+.....+...+..+.....+ |||+|++||||+++|++++..+ +.||+.++|+.+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~p------vlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~ 271 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDAP------LLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVV 271 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCCCCC------EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHH
Confidence 35678999999988888777766665544332 9999999999999999998776 468999999887541
Q ss_pred hhhHHHHH-----------HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-----CC---CCC
Q 009856 315 GAQAVTKI-----------HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----GD---QSR 375 (523)
Q Consensus 315 ~~~~~~~l-----------~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~---~~~ 375 (523)
..+.++.. .++|. ...++.|||||++.| +...+..|..+++.- +. ...
T Consensus 272 e~elFG~~~~~~~~~~~~~~g~~e----~a~~GtL~LdeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 338 (520)
T PRK10820 272 ESELFGHAPGAYPNALEGKKGFFE----QANGGSVLLDEIGEM---------SPRMQAKLLRFLNDGTFRRVGEDHEVHV 338 (520)
T ss_pred HHHhcCCCCCCcCCcccCCCChhh----hcCCCEEEEeChhhC---------CHHHHHHHHHHHhcCCcccCCCCcceee
Confidence 11111111 11232 223678999999987 557777787777542 11 123
Q ss_pred CEEEEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhh
Q 009856 376 DIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 444 (523)
Q Consensus 376 ~v~iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (523)
++.||+||+.+ ..+.+.|..|+ .++.+..|+..+|.. ++.+|+..+.. ..
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~------------------~~ 399 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFAD------------------EQ 399 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHH------------------Hc
Confidence 67899988653 35778888888 457777777766653 66677766533 12
Q ss_pred hhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 009856 445 KITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 495 (523)
Q Consensus 445 ~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~ 495 (523)
+.....++++.+..|..+. |+| |++.|.+.+..++..+.+..|+.+++
T Consensus 400 g~~~~~ls~~a~~~L~~y~--WPG-NvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 400 GVPRPKLAADLNTVLTRYG--WPG-NVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CCCCCCcCHHHHHHHhcCC--CCC-HHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 2222358999999998773 444 99999999999998877778888775
No 139
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.66 E-value=2.7e-15 Score=153.63 Aligned_cols=242 Identities=21% Similarity=0.348 Sum_probs=156.4
Q ss_pred CCcccCHHHHHHHHHHHHHH-hcc-----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc--c-hh
Q 009856 246 GDIILHPSLQRRIQHLAKAT-ANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--L-GA 316 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~-~~~-----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~--~-~~ 316 (523)
..|+|++.+++.+...+... +.. .....++.++||+||||||||++|++||..++.||+.++++.+.. + +.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 45999999999998766431 111 111123579999999999999999999999999999998875543 2 22
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 009856 317 QAVTKIHEIFDWA------------------------------------------------------------------- 329 (523)
Q Consensus 317 ~~~~~l~~~f~~a------------------------------------------------------------------- 329 (523)
+....+..+|..|
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 3223333333332
Q ss_pred ---------------------------------------------------------------------Hh-cCCceEEE
Q 009856 330 ---------------------------------------------------------------------KK-SKKGLLLF 339 (523)
Q Consensus 330 ---------------------------------------------------------------------~~-~~~~~vL~ 339 (523)
.. ....+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 00 11346999
Q ss_pred Eccchhhhhhccccc---CcHHHHHHHHHHHHHhC-------CCCCCEEEEEee----CCCCCCcHHHhccccceEeecC
Q 009856 340 IDEADAFLCERNSIH---MSEAQRSALNALLFRTG-------DQSRDIVLVLAT----NRPGDLDSAITDRIDEVIEFPL 405 (523)
Q Consensus 340 iDEid~l~~~~~~~~---~~~~~~~~l~~ll~~~~-------~~~~~v~iI~tt----n~~~~l~~al~~Rf~~~i~~~~ 405 (523)
|||||+++.+.++.+ .....++.|..++.... -+..++.||++. ..|++|-|.|..||+.++.+.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999987653221 12334444444443211 134578888765 3467889999999999999999
Q ss_pred CCHHHHHHHH----HHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC-------CCCCHHHHHHH
Q 009856 406 PREEERFKLL----KLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-------EGFSGREIAKL 474 (523)
Q Consensus 406 p~~~er~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~G~sgrdI~~L 474 (523)
++.++...|| ...+++|.. +|.. .++.+ .++++.+..||... ++.-.|-|+.+
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~-------------Lf~~--egv~L-~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI 398 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQA-------------LLAT--EGVTL-EFTDDAIRRIAEIAYQVNEKTENIGARRLHTV 398 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHH-------------HHhh--cCcEE-EEcHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 9999999988 335554432 1111 11111 48899999988763 46666788888
Q ss_pred HH-HHHHHHHcCCC-----CccCHHHHHHHHHHHH
Q 009856 475 MA-SVQAAVYARPD-----CVLDSQLFREVVEYKV 503 (523)
Q Consensus 475 ~~-~~~~a~~~~~~-----~~it~e~~~~~l~~~~ 503 (523)
+. .+.-..|...+ ..||.+.+...+...+
T Consensus 399 ~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 399 MEKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred HHHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHH
Confidence 85 33344444332 3678888877776654
No 140
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.66 E-value=5.4e-15 Score=154.25 Aligned_cols=234 Identities=19% Similarity=0.300 Sum_probs=146.9
Q ss_pred CcccCHHHHHHHHHHHH----HHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---ch
Q 009856 247 DIILHPSLQRRIQHLAK----ATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LG 315 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~----~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~ 315 (523)
.|||++.+++.+...+. .+.... ....+..++||+||||||||++|+++|..++.||+.++++.+.. .+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 48999999999866542 121111 11124568999999999999999999999999999999887643 22
Q ss_pred hhHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhccccc-----CcHHHHHHHHHHHHHh-------C---CCCCCE
Q 009856 316 AQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIH-----MSEAQRSALNALLFRT-------G---DQSRDI 377 (523)
Q Consensus 316 ~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~-----~~~~~~~~l~~ll~~~-------~---~~~~~v 377 (523)
.+....+..++..+ .....++||||||+|.+..+..+.+ .....+..|..++... + ....++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 22333334333221 1123578999999999976532211 1123555666666421 0 112245
Q ss_pred EEEEeeCCC---------------------------------C-------------------CCcHHHhccccceEeecC
Q 009856 378 VLVLATNRP---------------------------------G-------------------DLDSAITDRIDEVIEFPL 405 (523)
Q Consensus 378 ~iI~ttn~~---------------------------------~-------------------~l~~al~~Rf~~~i~~~~ 405 (523)
++|.|+|.. + .+.|+|+.|++.++.|.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 556665540 0 157899999999999999
Q ss_pred CCHHHHHHHHHH----HHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH--CCCCCHHHHHHHHH-HH
Q 009856 406 PREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMA-SV 478 (523)
Q Consensus 406 p~~~er~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~-~~ 478 (523)
.+.+++..|+.. .++++.. ++. ..++. -.++++++..|+.. ..++..|.|+.++. .+
T Consensus 312 L~~~~L~~Il~~~~~~l~~q~~~-------------~l~--~~~i~-L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l 375 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQYQK-------------LFE--MDGVE-LEFTDEALEAIAKKAIERKTGARGLRSILEEIL 375 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------HHH--hCCcE-EEECHHHHHHHHHhCCCCCCCCchHHHHHHHHh
Confidence 999999999984 3333221 000 11111 14899999999986 55677889999885 33
Q ss_pred HHHHHcCC------CCccCHHHHH
Q 009856 479 QAAVYARP------DCVLDSQLFR 496 (523)
Q Consensus 479 ~~a~~~~~------~~~it~e~~~ 496 (523)
...++.-. ...||.+.+.
T Consensus 376 ~~~~~~~p~~~~~~~v~I~~~~v~ 399 (412)
T PRK05342 376 LDVMFELPSREDVEKVVITKEVVE 399 (412)
T ss_pred HHHHHhccccCCCceEEECHHHhc
Confidence 33333211 1246766654
No 141
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.66 E-value=4.2e-15 Score=152.22 Aligned_cols=243 Identities=19% Similarity=0.332 Sum_probs=156.5
Q ss_pred CCcccCHHHHHHHHHHHHHHhc-c-----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chh
Q 009856 246 GDIILHPSLQRRIQHLAKATAN-T-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 316 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~-~-----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~ 316 (523)
..|||+++++..+...+..-+. . .....+++++||+||||||||++|++||..++.||+.+++..+.. .+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 4599999999998765553211 1 111234589999999999999999999999999999998765532 222
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 009856 317 QAVTKIHEIFDWA------------------------------------------------------------------- 329 (523)
Q Consensus 317 ~~~~~l~~~f~~a------------------------------------------------------------------- 329 (523)
+....+..+|..+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 2223333332222
Q ss_pred -----------------------------------------------------------------------HhcCCceEE
Q 009856 330 -----------------------------------------------------------------------KKSKKGLLL 338 (523)
Q Consensus 330 -----------------------------------------------------------------------~~~~~~~vL 338 (523)
......+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 001234699
Q ss_pred EEccchhhhhhccccc---CcHHHHHHHHHHHHHhC-------CCCCCEEEEEee----CCCCCCcHHHhccccceEeec
Q 009856 339 FIDEADAFLCERNSIH---MSEAQRSALNALLFRTG-------DQSRDIVLVLAT----NRPGDLDSAITDRIDEVIEFP 404 (523)
Q Consensus 339 ~iDEid~l~~~~~~~~---~~~~~~~~l~~ll~~~~-------~~~~~v~iI~tt----n~~~~l~~al~~Rf~~~i~~~ 404 (523)
||||||+++.+..+.+ .....++.|..++.... -+..++.||++. ..|++|-|.|..||+.++.+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999999997653222 12334444444443211 134578888865 357789999999999999999
Q ss_pred CCCHHHHHHHH----HHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC-------CCCCHHHHHH
Q 009856 405 LPREEERFKLL----KLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-------EGFSGREIAK 473 (523)
Q Consensus 405 ~p~~~er~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~G~sgrdI~~ 473 (523)
+++.++...|| ...+++|.. +|... ++.+ .++++.+..||... ++.-.|-|+.
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~-------------Lf~~e--gv~L-~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 395 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKA-------------LMKTE--GVNI-EFSDEAIKRIAELAYNVNEKTENIGARRLHT 395 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHH-------------HHhhc--CcEE-EEeHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 99999999988 334444322 11111 1111 47899999888763 5666778888
Q ss_pred HHH-HHHHHHHcCCC-----CccCHHHHHHHHHHHHH
Q 009856 474 LMA-SVQAAVYARPD-----CVLDSQLFREVVEYKVE 504 (523)
Q Consensus 474 L~~-~~~~a~~~~~~-----~~it~e~~~~~l~~~~~ 504 (523)
++. .+.-+.|...+ ..||.+.+...+...+.
T Consensus 396 ilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 396 VLERLLEDISFEAPDLSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHh
Confidence 885 33344444332 26788888777766543
No 142
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.66 E-value=3e-15 Score=155.29 Aligned_cols=227 Identities=16% Similarity=0.253 Sum_probs=143.6
Q ss_pred CCcccCHHHHHHHHHHHHH----Hhcc-hhcC-----CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc--
Q 009856 246 GDIILHPSLQRRIQHLAKA----TANT-KIHQ-----APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-- 313 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~----~~~~-~~~~-----~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-- 313 (523)
+.|||++.+++.+...+.. +... .... .+..++||+||||||||++|+++|..++.||..+++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 4579999999998765521 1110 0010 12358999999999999999999999999999998877643
Q ss_pred -chhhHHHHHHHHHHHH---HhcCCceEEEEccchhhhhhcccccC-----cHHHHHHHHHHHHHhC----------CCC
Q 009856 314 -LGAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHM-----SEAQRSALNALLFRTG----------DQS 374 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~-----~~~~~~~l~~ll~~~~----------~~~ 374 (523)
.+.+....+...+..+ .....++||||||+|.+.+++.+... ....+..|..++...- .+.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 2222233344433221 11234579999999999875432211 1234555555553211 123
Q ss_pred CCEEEEEeeCCC---------------------------C-----------------------CCcHHHhccccceEeec
Q 009856 375 RDIVLVLATNRP---------------------------G-----------------------DLDSAITDRIDEVIEFP 404 (523)
Q Consensus 375 ~~v~iI~ttn~~---------------------------~-----------------------~l~~al~~Rf~~~i~~~ 404 (523)
.++++|+|+|.. + .+.|+|+.|++.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 467888888860 0 15588999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH--CCCCCHHHHHHHHH-HHHHH
Q 009856 405 LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMA-SVQAA 481 (523)
Q Consensus 405 ~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~-~~~~a 481 (523)
+.+.+++..|+...+..... .+...+. ..++. -.+++++++.|+.. ..++..|.|+.++. .+...
T Consensus 317 pL~~~~L~~Il~~~~n~l~k---------q~~~~l~--~~gi~-L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVK---------QYQALFK--MDNVE-LDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHH---------HHHHHhc--cCCeE-EEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 99999999999874332211 0000000 01111 14899999999986 45677899999995 34444
Q ss_pred HHc
Q 009856 482 VYA 484 (523)
Q Consensus 482 ~~~ 484 (523)
++.
T Consensus 385 m~e 387 (413)
T TIGR00382 385 MFD 387 (413)
T ss_pred Hhh
Confidence 443
No 143
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.66 E-value=1.4e-15 Score=164.44 Aligned_cols=216 Identities=20% Similarity=0.289 Sum_probs=149.3
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQA 318 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~ 318 (523)
.+.++||.+..+..+...+..+.....+ |||+|++||||+++|++|+..+ +.||+.++|+.+.. +..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~p------VlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLN------VLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCc------EEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 6789999999999988888877655443 9999999999999999999886 47999999998754 12222
Q ss_pred HHHHHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEee
Q 009856 319 VTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLAT 383 (523)
Q Consensus 319 ~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~tt 383 (523)
++.....|..+. ....++.|||||++.| +...+..|..+++.-. . ...++.||++|
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t 329 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL---------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT 329 (509)
T ss_pred cCccccccCCCcccCCcchhhcCCCEEEecChhhC---------CHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEec
Confidence 222222221110 1234678999999997 5567777777775421 1 12378999999
Q ss_pred CCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 384 NRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 384 n~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
|.. ..+.+.|..|+ .++.+..|+..+|.+ ++.+|+.++.. ..+.....++
T Consensus 330 ~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~------------------~~~~~~~~~s 390 (509)
T PRK05022 330 NRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRA------------------RLGLRSLRLS 390 (509)
T ss_pred CCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHH------------------HcCCCCCCCC
Confidence 763 35778888888 566677777766654 77777776533 1111223589
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCC------ccCHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDC------VLDSQLFR 496 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~------~it~e~~~ 496 (523)
++.+..|..+. |+| ||+.|.+.++.++..+... .|+.+++.
T Consensus 391 ~~a~~~L~~y~--WPG-NvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 391 PAAQAALLAYD--WPG-NVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHHHHHHhCC--CCC-cHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 99999998774 555 9999998888888765543 45655543
No 144
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=4.5e-16 Score=159.17 Aligned_cols=211 Identities=22% Similarity=0.245 Sum_probs=142.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEecCCccc--
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAP-- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~~~~~~-- 313 (523)
.....++++||.+...+.+.+-+...... ..+|||+|++||||+.+|+.|+... +.||+.+||+.+..
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPS------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhCCC------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 34566799999877777776666553222 2359999999999999999998654 56999999999876
Q ss_pred chhhHHHHHHHHHHHHHhcC-------CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-----hCC---CCCCEE
Q 009856 314 LGAQAVTKIHEIFDWAKKSK-------KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----TGD---QSRDIV 378 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~-------~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----~~~---~~~~v~ 378 (523)
...+.+++..+.|+.+...+ .++.|||||+..| +...+..|..+++. ++. ...+|.
T Consensus 146 ~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L---------P~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 146 QEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL---------PPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HHHHHhccccceeecccCCcCchheecCCCEEehhhhhhC---------CHhHHHHHHHHHHcCceEecCCCCCcCCCce
Confidence 34456666667776644332 4678999999987 66778888888876 332 345889
Q ss_pred EEEeeCC--CCCCcH--HHhccccceEeecCCCHHHH----HHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 379 LVLATNR--PGDLDS--AITDRIDEVIEFPLPREEER----FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 379 iI~ttn~--~~~l~~--al~~Rf~~~i~~~~p~~~er----~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
+|++||. .+.+-. .|.+|. ..+.+..|+..+| ..++.+|+..+.. +.+..+..
T Consensus 217 li~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~------------------~l~~~~~~ 277 (403)
T COG1221 217 LICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEAR------------------RLGLPLSV 277 (403)
T ss_pred eeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHH------------------HcCCCCCC
Confidence 9999875 223333 455533 3444555555444 4488888877655 23333334
Q ss_pred CCHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHcCCCC
Q 009856 451 LSDNVIQEAARK-TEGFSGREIAKLMASVQAAVYARPDC 488 (523)
Q Consensus 451 ~~~~~l~~la~~-t~G~sgrdI~~L~~~~~~a~~~~~~~ 488 (523)
.+++.+..+-.+ ++| +|+.|-+.++.+++.....
T Consensus 278 ~~~~a~~~L~~y~~pG----NirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 278 DSPEALRALLAYDWPG----NIRELKNLVERAVAQASGE 312 (403)
T ss_pred CCHHHHHHHHhCCCCC----cHHHHHHHHHHHHHHhccc
Confidence 556677766544 556 8888888888877765433
No 145
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.65 E-value=4.7e-16 Score=165.96 Aligned_cols=281 Identities=17% Similarity=0.229 Sum_probs=175.0
Q ss_pred cccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCCCCcccccCCCCCCCchhhHHHHHHHHhhcCCCCCCCccccc
Q 009856 163 DRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAI 242 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~~~l~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (523)
.|...++++++.......+.+.+.|+. +|+.+|+....+..-. ...+.............. ....
T Consensus 71 ~~~~piI~lt~~~~~~~~~~a~~~Ga~---dyl~KP~~~~~L~~~i-----------~~~~~~~~l~~~~~~l~~-~~~~ 135 (445)
T TIGR02915 71 APDTKVIVITGNDDRENAVKAIGLGAY---DFYQKPIDPDVLKLIV-----------DRAFHLYTLETENRRLQS-ALGG 135 (445)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHCCcc---EEEeCCCCHHHHHHHH-----------hhhhhhhhhHHHHHHhhh-hhhc
Confidence 344555556666666667777777764 7777777555443211 111000000000000000 0111
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhh
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQ 317 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~ 317 (523)
..+..++|.......+...+..+.... .+++|+|++||||+++|++++... +.||+.++|+.+.. +...
T Consensus 136 ~~~~~lig~s~~~~~l~~~i~~~a~~~------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 136 TALRGLITSSPGMQKICRTIEKIAPSD------ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCC------CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHH
Confidence 245678998877777776665543322 249999999999999999999876 46899999988743 1111
Q ss_pred HHHHHHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEe
Q 009856 318 AVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLA 382 (523)
Q Consensus 318 ~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~t 382 (523)
.++.....|..+. ....+++|||||++.| +...+..|..++..-. . ...++.||+|
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l---------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 210 LFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL---------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred hcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC---------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 1111111111110 1234678999999987 5577777777775421 1 1237889999
Q ss_pred eCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccC
Q 009856 383 TNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 451 (523)
Q Consensus 383 tn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (523)
|+.. ..+.+.|..|+ ..+.+..|+..+|.+ ++.+|+..+.. ..+.....+
T Consensus 281 ~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~------------------~~~~~~~~~ 341 (445)
T TIGR02915 281 TNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFAR------------------ELKRKTKGF 341 (445)
T ss_pred cCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHH------------------HhCCCCCCC
Confidence 9764 46777788888 567777777777765 77777766533 112222358
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 495 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~ 495 (523)
+++.+..|..+. |+| +++.|.+.++.++..+.+..|+.+++
T Consensus 342 ~~~a~~~L~~~~--wpg-NvreL~~~i~~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 342 TDDALRALEAHA--WPG-NVRELENKVKRAVIMAEGNQITAEDL 382 (445)
T ss_pred CHHHHHHHHhCC--CCC-hHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 999999998774 555 99999999999998877778887775
No 146
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.64 E-value=1.8e-15 Score=162.52 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=149.5
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~ 314 (523)
.....|++++|.+..+..+...+..+.....+ |||+|+|||||+++|++|+..+ +.||+.++|+.+.. +
T Consensus 206 ~~~~~f~~iiG~S~~m~~~~~~i~~~A~~~~p------VLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ll 279 (526)
T TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYARSDAT------VLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLL 279 (526)
T ss_pred ccccchhheeeCCHHHHHHHHHHHHHhCCCCc------EEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHH
Confidence 34577999999999999888888776655443 9999999999999999999876 57999999998754 2
Q ss_pred hhhHHHHHHHHHHHHH--------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEE
Q 009856 315 GAQAVTKIHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIV 378 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~--------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~ 378 (523)
..+.+++..+.|+.+. ....++.|||||++.| +...+..|..+++.-. . ...++.
T Consensus 280 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L---------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvR 350 (526)
T TIGR02329 280 EAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM---------PLPLQTRLLRVLEEREVVRVGGTEPVPVDVR 350 (526)
T ss_pred HHHhcCCcccccccccccccccchhhcCCceEEecChHhC---------CHHHHHHHHHHHhcCcEEecCCCceeeecce
Confidence 2233333333333322 1123678999999987 5677778877776421 1 123568
Q ss_pred EEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhh
Q 009856 379 LVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 447 (523)
Q Consensus 379 iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (523)
||++||.. ..+.+.|..|+ ..+.+..|+..+|.+ ++.+|+.++.. ..++
T Consensus 351 iIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~------------------~~~~- 410 (526)
T TIGR02329 351 VVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAA------------------ALRL- 410 (526)
T ss_pred EEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHH------------------HcCC-
Confidence 99998763 24556666677 456666676666554 77777776532 0011
Q ss_pred hccCCHHHHHH-------HHHHCCCCCHHHHHHHHHHHHHHHHcC---CCCccCHHHHHHH
Q 009856 448 IKDLSDNVIQE-------AARKTEGFSGREIAKLMASVQAAVYAR---PDCVLDSQLFREV 498 (523)
Q Consensus 448 ~~~~~~~~l~~-------la~~t~G~sgrdI~~L~~~~~~a~~~~---~~~~it~e~~~~~ 498 (523)
.++++.+.. |..+. |+| ++++|.+.++.++... ....|+.+++...
T Consensus 411 --~~~~~a~~~~~~~~~~L~~y~--WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 411 --PDSEAAAQVLAGVADPLQRYP--WPG-NVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred --CCCHHHHHHhHHHHHHHHhCC--CCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 266666665 65553 555 9999999888888753 3467888886543
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=3.3e-15 Score=169.68 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=124.8
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...++.+||.+....++..++.. ....+++|+||||||||++|+.+|..+ +.+++.++.+.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc--------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 45678999998875555554331 122369999999999999999999987 667777766654
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. .+.++....+..+|..+.....++||||||++.+.+...+.+ +....+.|...+ ..+.+.+|++|+..+
T Consensus 246 ~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~~~~lkp~l-----~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLDEY 319 (857)
T ss_pred hhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhHHHHhcchh-----hcCCCeEEEcCCCHHH
Confidence 2 244566778888998765555678999999999987654332 223344554444 456889999998766
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
.+|+++.+||+ .|.++.|+.+++..|++.+..++.
T Consensus 320 r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 320 RQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred HHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 48999999995 788999999999999988876654
No 148
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.64 E-value=2.7e-14 Score=141.42 Aligned_cols=202 Identities=16% Similarity=0.194 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chhhHH----HH-H
Q 009856 251 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQAV----TK-I 322 (523)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~~~~----~~-l 322 (523)
.+.++..+..+...+.. + .++||+||||||||++|+++|..+|.+++.++|..-.. +.+... .. .
T Consensus 4 t~~~~~l~~~~l~~l~~----g---~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS----G---YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred CHHHHHHHHHHHHHHhc----C---CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 44455555555544432 2 24999999999999999999999999999998865221 111100 00 0
Q ss_pred H-------------------HHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----C-------
Q 009856 323 H-------------------EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----D------- 372 (523)
Q Consensus 323 ~-------------------~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~------- 372 (523)
. ..+..|. ..+.+|+|||++.+ ++..+..|..++..-. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~--~~g~~lllDEi~r~---------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAV--REGFTLVYDEFTRS---------KPETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHH--HcCCEEEEcchhhC---------CHHHHHHHHHHhcCCeEEccCCCCCCce
Confidence 0 0111111 23579999999986 4466667777764311 0
Q ss_pred --CCCCEEEEEeeCCCC-----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhh
Q 009856 373 --QSRDIVLVLATNRPG-----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQK 445 (523)
Q Consensus 373 --~~~~v~iI~ttn~~~-----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (523)
...++.||+|+|... .+++++.+|| ..+.++.|+.++...|+...+. .
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~---~--------------------- 200 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKTD---V--------------------- 200 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhhC---C---------------------
Confidence 124788999999753 5789999999 8999999999999999987642 1
Q ss_pred hhhccCCHHHHHHH---HHH------CCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 446 ITIKDLSDNVIQEA---ARK------TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 446 ~~~~~~~~~~l~~l---a~~------t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
++..++.+ +.. ....+ ++.++..+.++........+++++|..++.+.+.
T Consensus 201 ------~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 201 ------AEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred ------CHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 11111111 111 11223 6666666666666666778999999999988764
No 149
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.64 E-value=5e-14 Score=138.71 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=102.3
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC------------CCCCcHHHhccccceEe
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAITDRIDEVIE 402 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~------------~~~l~~al~~Rf~~~i~ 402 (523)
|+||||||++.| + -..+..|...+.+...+ +||++||+ |..++..|++|+ .+|.
T Consensus 292 pGVLFIDEvHmL---------D---IE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~ 357 (450)
T COG1224 292 PGVLFIDEVHML---------D---IECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIIS 357 (450)
T ss_pred cceEEEechhhh---------h---HHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEe
Confidence 458899998875 1 22333333334444444 57777775 567899999999 9999
Q ss_pred ecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 009856 403 FPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482 (523)
Q Consensus 403 ~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~ 482 (523)
..+++.++.+.|++........ .+++++++.|+....--|.|---+|+.-+...+
T Consensus 358 t~py~~~EireIi~iRa~ee~i-------------------------~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA 412 (450)
T COG1224 358 TRPYSREEIREIIRIRAKEEDI-------------------------ELSDDALEYLTDIGEETSLRYAVQLLTPASIIA 412 (450)
T ss_pred cCCCCHHHHHHHHHHhhhhhcc-------------------------ccCHHHHHHHHhhchhhhHHHHHHhccHHHHHH
Confidence 9999999999999999876554 589999999999877778887778887666666
Q ss_pred HcCCCCccCHHHHHHHHHHHHHhh
Q 009856 483 YARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 483 ~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
..++...+..+|++.+-+-|....
T Consensus 413 ~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 413 KRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred HHhCCCeeehhHHHHHHHHHhhHH
Confidence 666778999999999999887643
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.63 E-value=2.6e-13 Score=149.06 Aligned_cols=216 Identities=20% Similarity=0.261 Sum_probs=138.4
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
+.+|++++|++.....+...+ .. ..+.+++|+||||||||++|++++... +.+|+.++|..+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~i---a~-----~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKV---AS-----PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHH---hc-----CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 567899999998888764433 21 123469999999999999999998765 357899988765
Q ss_pred ccchhhH----HH--------HHHHHHHHH---------HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh
Q 009856 312 APLGAQA----VT--------KIHEIFDWA---------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 370 (523)
Q Consensus 312 ~~~~~~~----~~--------~l~~~f~~a---------~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 370 (523)
....... .+ .....+... .....+++|||||++.| +...+..|..++..-
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L---------d~~~Q~~Ll~~Le~~ 292 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL---------DPLLQNKLLKVLEDK 292 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC---------CHHHHHHHHHHHhhC
Confidence 3100000 00 000001000 00123579999999886 445666666666431
Q ss_pred C-------------------------CCCCCEEEEEe-eCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhcc
Q 009856 371 G-------------------------DQSRDIVLVLA-TNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 424 (523)
Q Consensus 371 ~-------------------------~~~~~v~iI~t-tn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~ 424 (523)
. ....++++|++ ++.++.++++|++|| ..+.|++++.+++..|++.++.....
T Consensus 293 ~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~Il~~~a~~~~v 371 (615)
T TIGR02903 293 RVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALIVLNAAEKINV 371 (615)
T ss_pred eEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 0 01224566654 466888999999999 57899999999999999998875432
Q ss_pred CCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-Hc------C-CCCccCHHHHH
Q 009856 425 SDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV-YA------R-PDCVLDSQLFR 496 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~-~~------~-~~~~it~e~~~ 496 (523)
.++++.++.|+.++ +.+|..-.++..+...+ +. . ....|+.+++.
T Consensus 372 -------------------------~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~ 424 (615)
T TIGR02903 372 -------------------------HLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVY 424 (615)
T ss_pred -------------------------CCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHH
Confidence 36788899998876 45654333332222221 11 1 12368999999
Q ss_pred HHHHHH
Q 009856 497 EVVEYK 502 (523)
Q Consensus 497 ~~l~~~ 502 (523)
+++..-
T Consensus 425 ~~l~~~ 430 (615)
T TIGR02903 425 EVIQIS 430 (615)
T ss_pred HHhCCC
Confidence 988754
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.63 E-value=2.5e-14 Score=136.51 Aligned_cols=192 Identities=19% Similarity=0.337 Sum_probs=137.5
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhH
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA 318 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~ 318 (523)
...+++++|-+..++.|..-...+.. +.|..++||+|++|||||++++++...+ |..++.+... .
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~----G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~--------~ 90 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ----GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE--------D 90 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc----CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH--------H
Confidence 45678999999999988776555443 5677899999999999999999999887 4455555443 3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-hCCCCCCEEEEEeeCCCCC---------
Q 009856 319 VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-TGDQSRDIVLVLATNRPGD--------- 388 (523)
Q Consensus 319 ~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~v~iI~ttn~~~~--------- 388 (523)
...+..+++.....+...|||+||+.- ......-..|..+|.. +...+.|++|.+|||+...
T Consensus 91 L~~l~~l~~~l~~~~~kFIlf~DDLsF--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~ 162 (249)
T PF05673_consen 91 LGDLPELLDLLRDRPYKFILFCDDLSF--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDRE 162 (249)
T ss_pred hccHHHHHHHHhcCCCCEEEEecCCCC--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhcc
Confidence 344556666665566678999999742 1122334566666654 4467889999999996421
Q ss_pred ------Cc--------HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 389 ------LD--------SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 389 ------l~--------~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
+. -+|-+||+..|.|.+|+.++-..|+.+++..+.. .++++
T Consensus 163 ~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~-------------------------~~~~e 217 (249)
T PF05673_consen 163 DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGL-------------------------ELDEE 217 (249)
T ss_pred CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHH
Confidence 21 1445699999999999999999999999988765 24433
Q ss_pred HHHH----HHHHCCCCCHHHHHHHHHHH
Q 009856 455 VIQE----AARKTEGFSGREIAKLMASV 478 (523)
Q Consensus 455 ~l~~----la~~t~G~sgrdI~~L~~~~ 478 (523)
.+.. .|..-.|.|||--.+.+..+
T Consensus 218 ~l~~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 218 ELRQEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3332 23445679999888887643
No 152
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.63 E-value=3.7e-15 Score=159.89 Aligned_cols=216 Identities=20% Similarity=0.276 Sum_probs=143.7
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHH--------h---CCCeeEEecC
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK--------S---GLDYAMMTGG 309 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~--------l---~~~~~~v~~~ 309 (523)
....|++++|.+..+..+...+........+ |||+|+|||||+++|++|+.. + +.||+.++|+
T Consensus 214 ~~~~f~~iiG~S~~m~~~~~~i~~~A~s~~p------VLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa 287 (538)
T PRK15424 214 TRYVLGDLLGQSPQMEQVRQTILLYARSSAA------VLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 287 (538)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCCCCc------EEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence 3467899999999999988887776654443 999999999999999999987 3 5799999999
Q ss_pred Cccc--chhhHHHHHHHHHHHHH--------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-----CC--
Q 009856 310 DVAP--LGAQAVTKIHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----GD-- 372 (523)
Q Consensus 310 ~~~~--~~~~~~~~l~~~f~~a~--------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~-- 372 (523)
.+.. +..+.+++..+.|..+. ....++.|||||++.| +...+..|..+++.- +.
T Consensus 288 al~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L---------p~~~Q~kLl~~L~e~~~~r~G~~~ 358 (538)
T PRK15424 288 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM---------PLPLQTRLLRVLEEKEVTRVGGHQ 358 (538)
T ss_pred cCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC---------CHHHHHHHHhhhhcCeEEecCCCc
Confidence 8764 23333333333333321 1234678999999987 567777787777542 11
Q ss_pred -CCCCEEEEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhh
Q 009856 373 -QSRDIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFK 440 (523)
Q Consensus 373 -~~~~v~iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~ 440 (523)
...++.||++||.. ..+.+.+..|+ .++.+..|+..+|.+ ++.+|+.++...
T Consensus 359 ~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~--------------- 422 (538)
T PRK15424 359 PVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAA--------------- 422 (538)
T ss_pred eeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHH---------------
Confidence 12367899999763 23556677777 567777777766654 777777764220
Q ss_pred hhhhhhhhccCCHHH-------HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCC---CccCHHHHH
Q 009856 441 KQQQKITIKDLSDNV-------IQEAARKTEGFSGREIAKLMASVQAAVYARPD---CVLDSQLFR 496 (523)
Q Consensus 441 ~~~~~~~~~~~~~~~-------l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~---~~it~e~~~ 496 (523)
.+. .++++. +..|..+. |+| +++.|-+.++.++..... ..++.+++.
T Consensus 423 ---~~~---~~~~~a~~~~~~a~~~L~~y~--WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 423 ---LSA---PFSAALRQGLQQCETLLLHYD--WPG-NVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred ---cCC---CCCHHHHHhhHHHHHHHHhCC--CCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 000 133333 34554442 555 899998888887765332 356666553
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=1.5e-14 Score=164.54 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=124.4
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...++.++|.+....++.+++. ....++++|+||||||||++|+.+|..+ +.+++.++.+.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~--------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG--------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc--------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 3457889999988888877654 2234479999999999999999999987 367888887655
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. .+.++....+..+|..+... .++||||||++.+.+.....+ +......|...+ ..+.+.+|++|+..+
T Consensus 247 ~ag~~~~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g-~~~~a~lLkp~l-----~rg~l~~IgaTt~~ey 319 (821)
T CHL00095 247 LAGTKYRGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEG-AIDAANILKPAL-----ARGELQCIGATTLDEY 319 (821)
T ss_pred hccCCCccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCC-cccHHHHhHHHH-----hCCCcEEEEeCCHHHH
Confidence 3 35567778899999988654 468999999999987654332 122334444444 356788999998653
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
..+++|.+|| ..|.++.|+.++...|++.....+
T Consensus 320 ~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~ 357 (821)
T CHL00095 320 RKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRY 357 (821)
T ss_pred HHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHH
Confidence 4789999999 678999999999999988776554
No 154
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.63 E-value=4.6e-15 Score=166.12 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=147.9
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~ 316 (523)
...|.+++|.+..+..+...+..+..... +|||+|+||||||++|++|+..+ +.||+.++|..+.. +..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~~------pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDS------TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhh
Confidence 35788999999988888877776654433 39999999999999999999876 57999999987643 121
Q ss_pred hHHHHH-----------HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCE
Q 009856 317 QAVTKI-----------HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDI 377 (523)
Q Consensus 317 ~~~~~l-----------~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v 377 (523)
..+++. ...|. ...+++|||||++.+ +...+..|..+++... . ...++
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le----~a~~GtL~Ldei~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFE----LADKSSLFLDEVGDM---------PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchhhHHH----hcCCCeEEEechhhC---------CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 111111 12222 223679999999987 5577777777775422 1 12478
Q ss_pred EEEEeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhh
Q 009856 378 VLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 446 (523)
Q Consensus 378 ~iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (523)
.||++|+.. ..+.+.+..|+ ..+.+..|+..+|.+ ++++|+.++.. ..+.
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~------------------~~~~ 573 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIAR------------------RMGR 573 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHH------------------HcCC
Confidence 899999763 24666677777 567778888777765 67777766533 1222
Q ss_pred hhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCH
Q 009856 447 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDS 492 (523)
Q Consensus 447 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~ 492 (523)
.+..++++.+..|..+. |+| +|+.|.+.++.++..+.+..|+.
T Consensus 574 ~~~~~s~~al~~L~~y~--WPG-NvrEL~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 574 NIDSIPAETLRTLSNME--WPG-NVRELENVIERAVLLTRGNVLQL 616 (686)
T ss_pred CCCCcCHHHHHHHHhCC--CCC-cHHHHHHHHHHHHHhCCCCcccc
Confidence 33358999999997764 555 99999999999998776666654
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.62 E-value=3.6e-14 Score=145.66 Aligned_cols=228 Identities=17% Similarity=0.253 Sum_probs=151.9
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC-----CCeeEEecCCcc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTGGDVA 312 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~-----~~~~~v~~~~~~ 312 (523)
...+..+|+++|..+..............++. .+++.++||||+|+|||+|++++++... .-+++++...+.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g---~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPG---GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhccC---CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence 35788999999998887777665554444332 2445599999999999999999998872 235555444332
Q ss_pred c-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCCC--
Q 009856 313 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD-- 388 (523)
Q Consensus 313 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~~-- 388 (523)
. +....-..-..-|.. .. ...+|+|||++.+.++.. .+..+..++..+....+ .||+|+. .|..
T Consensus 156 ~~~v~a~~~~~~~~Fk~--~y-~~dlllIDDiq~l~gk~~-------~qeefFh~FN~l~~~~k--qIvltsdr~P~~l~ 223 (408)
T COG0593 156 NDFVKALRDNEMEKFKE--KY-SLDLLLIDDIQFLAGKER-------TQEEFFHTFNALLENGK--QIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHHHhhhHHHHHH--hh-ccCeeeechHhHhcCChh-------HHHHHHHHHHHHHhcCC--EEEEEcCCCchhhc
Confidence 1 110101111112221 22 346899999999865322 23333333333322222 5666664 4443
Q ss_pred -CcHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 389 -LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 389 -l~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
+.|.|.|||. .++.+.+|+.+.|..|+...+..... .++++++..++.....
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~-------------------------~i~~ev~~~la~~~~~ 278 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI-------------------------EIPDEVLEFLAKRLDR 278 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHhhc
Confidence 5699999985 68899999999999999997776554 5899999999999876
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhh
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~ 507 (523)
+.|++..+++.+.+.+.... ..||.+.+.+++.+......
T Consensus 279 -nvReLegaL~~l~~~a~~~~-~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 279 -NVRELEGALNRLDAFALFTK-RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred -cHHHHHHHHHHHHHHHHhcC-ccCcHHHHHHHHHHhhcccc
Confidence 66677777766666665543 38999999999988876533
No 156
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.62 E-value=1.3e-15 Score=163.73 Aligned_cols=219 Identities=19% Similarity=0.257 Sum_probs=150.4
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQA 318 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~ 318 (523)
.+.+++|.......+...+........ +++|+|++|||||++|++++..+ +.||+.++|+.+.. +....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~------~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSI------SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCC------eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHh
Confidence 567899998888777776665443322 39999999999999999999987 46899999988743 11111
Q ss_pred HHHHHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEee
Q 009856 319 VTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLAT 383 (523)
Q Consensus 319 ~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~tt 383 (523)
+++..+.|..+. ....++.|||||++.| +...+..|..+++... . ...++.||+||
T Consensus 210 fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~ 280 (469)
T PRK10923 210 FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM---------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAAT 280 (469)
T ss_pred cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC---------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeC
Confidence 111111111110 1223578999999987 5567777777775421 1 12367899999
Q ss_pred CCC-------CCCcHHHhccccceEeecCCCHHHHH----HHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 384 NRP-------GDLDSAITDRIDEVIEFPLPREEERF----KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 384 n~~-------~~l~~al~~Rf~~~i~~~~p~~~er~----~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
+.. ..+.+.|..|| ..+.+..|+..+|. .++.+|+..+.. ..+..+..++
T Consensus 281 ~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~ 341 (469)
T PRK10923 281 HQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAAR------------------ELGVEAKLLH 341 (469)
T ss_pred CCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHH------------------HcCCCCCCcC
Confidence 753 35778888888 45666666655554 477888776533 1122233589
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++.+..|..+. |+| +++.|-+.++.++..+.+..|+.+++...+
T Consensus 342 ~~a~~~L~~~~--wpg-Nv~eL~~~i~~~~~~~~~~~i~~~~l~~~~ 385 (469)
T PRK10923 342 PETEAALTRLA--WPG-NVRQLENTCRWLTVMAAGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHHHhCC--CCC-hHHHHHHHHHHHHHhCCCCcccHHHCcHhh
Confidence 99999998775 666 999999999999998888899988875433
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.62 E-value=1.2e-14 Score=165.64 Aligned_cols=169 Identities=18% Similarity=0.255 Sum_probs=122.1
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCC
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGD 310 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~ 310 (523)
....++.+||.+....++..++. .....+++|+||||||||++++.+|..+ +.+++.++.+.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~--------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS--------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh--------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 34567899999887555554432 1223468999999999999999999986 56677776555
Q ss_pred cc---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 311 VA---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 311 ~~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+. .+.++....+..+|..+.....++||||||++.|.+...+.+ +....+.|...+ ..+.+.+|++|+..+
T Consensus 240 l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~d~~~~Lk~~l-----~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AMDAGNMLKPAL-----ARGELHCIGATTLDE 313 (852)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hhHHHHHhchhh-----hcCceEEEEeCcHHH
Confidence 42 244566678888888876655678999999999986443322 112222332222 456789999998653
Q ss_pred -----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhcc
Q 009856 388 -----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 424 (523)
Q Consensus 388 -----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~ 424 (523)
.+|+++.+|| ..|.++.|+.+++..|++.+..++..
T Consensus 314 ~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 314 YRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred HHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 5799999999 57899999999999999988777654
No 158
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.62 E-value=6.2e-14 Score=142.50 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=158.9
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC-------CCeeEEe---
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMT--- 307 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~-------~~~~~v~--- 307 (523)
...+..+|..|||++.++..|...+. .+..+++||+||+|||||++|++++..+. .||....
T Consensus 9 ~~~~~~pf~~ivGq~~~k~al~~~~~--------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 9 KERPVFPFTAIVGQEEMKLALILNVI--------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred ccCCCCCHHHHhChHHHHHHHHHhcc--------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 34567789999999999998865433 23446899999999999999999988872 3332000
Q ss_pred ---cC-------------------Ccccc-hhhHHHH------HHHHHHHHH--------hcCCceEEEEccchhhhhhc
Q 009856 308 ---GG-------------------DVAPL-GAQAVTK------IHEIFDWAK--------KSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 308 ---~~-------------------~~~~~-~~~~~~~------l~~~f~~a~--------~~~~~~vL~iDEid~l~~~~ 350 (523)
++ .+..+ .+-.... +...|.... ....+++|||||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL---- 156 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL---- 156 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC----
Confidence 00 00000 0001111 111111110 1223579999999987
Q ss_pred ccccCcHHHHHHHHHHHHHh-------C---CCCCCEEEEEeeCCCC-CCcHHHhccccceEeecCCC-HHHHHHHHHHH
Q 009856 351 NSIHMSEAQRSALNALLFRT-------G---DQSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLPR-EEERFKLLKLY 418 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~-------~---~~~~~v~iI~ttn~~~-~l~~al~~Rf~~~i~~~~p~-~~er~~il~~~ 418 (523)
++..+..|...+..- + ..+.++++|+|.|..+ .+.+++++||...+.+..|+ .+.+.+|++..
T Consensus 157 -----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 157 -----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred -----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 446666666665431 1 1234678888888655 69999999999999999998 58999999886
Q ss_pred HHhhccCCCC-----CCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHcCCCCcc
Q 009856 419 LKKYLCSDEG-----DSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR---KTEGFSGREIAKLMASVQAAVYARPDCVL 490 (523)
Q Consensus 419 l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~---~t~G~sgrdI~~L~~~~~~a~~~~~~~~i 490 (523)
.......... ..... ........+..+.-..+++..+..|+. .+.--|+|--..++.++++.++..+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~-~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V 310 (350)
T CHL00081 232 TSFDKNPQEFREKYEESQEE-LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEV 310 (350)
T ss_pred hccccChhhhhhhhcccccc-CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCC
Confidence 4211000000 00000 111111122223333577877776654 44445788888888999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 009856 491 DSQLFREVVEYKVEEHH 507 (523)
Q Consensus 491 t~e~~~~~l~~~~~~~~ 507 (523)
+.+|+..+....++...
T Consensus 311 ~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 311 TPKDIFKVITLCLRHRL 327 (350)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999988554
No 159
>PRK09087 hypothetical protein; Validated
Probab=99.61 E-value=3.6e-14 Score=137.11 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=131.4
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHH
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV 319 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~ 319 (523)
.+..+|+++|..+.....+..+.... ..+.+.++|+||+|||||+|+++++...+..|+ +...+ ..
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~~l~~~~------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~---~~--- 80 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVSLVDHWP------NWPSPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEI---GS--- 80 (226)
T ss_pred CCCCChhceeecCchHHHHHHHHhcc------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHc---ch---
Confidence 45668999997554444544322211 112234999999999999999999987655433 22211 11
Q ss_pred HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCC---CCcHHHhc
Q 009856 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG---DLDSAITD 395 (523)
Q Consensus 320 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~---~l~~al~~ 395 (523)
..+.... ..+|+|||++.+.. .+..+..++...... +.. +|+|++ .|. ...+.+++
T Consensus 81 ----~~~~~~~----~~~l~iDDi~~~~~----------~~~~lf~l~n~~~~~-g~~-ilits~~~p~~~~~~~~dL~S 140 (226)
T PRK09087 81 ----DAANAAA----EGPVLIEDIDAGGF----------DETGLFHLINSVRQA-GTS-LLMTSRLWPSSWNVKLPDLKS 140 (226)
T ss_pred ----HHHHhhh----cCeEEEECCCCCCC----------CHHHHHHHHHHHHhC-CCe-EEEECCCChHHhccccccHHH
Confidence 1111111 24788999997521 122333344333222 233 444443 333 24688999
Q ss_pred ccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHH
Q 009856 396 RID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 473 (523)
Q Consensus 396 Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 473 (523)
||. .++.+.+|+.+++..+++.++..... .++++.++.|+.+..| +.+.+..
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-------------------------~l~~ev~~~La~~~~r-~~~~l~~ 194 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQL-------------------------YVDPHVVYYLVSRMER-SLFAAQT 194 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHhhh-hHHHHHH
Confidence 985 79999999999999999999987543 4899999999999987 5556666
Q ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 474 LMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 474 L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
+++.+...+... ...+|...++++++..
T Consensus 195 ~l~~L~~~~~~~-~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 195 IVDRLDRLALER-KSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Confidence 666666666553 3679999999999875
No 160
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.61 E-value=1e-14 Score=162.21 Aligned_cols=216 Identities=16% Similarity=0.225 Sum_probs=151.9
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~ 316 (523)
..+|++++|.+.....+...+..+.....+ |||+|+|||||+++|++|+..+ +.||+.++|+.+.. +..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~p------vli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFP------VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCC------EEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHH
Confidence 457999999988888887777766544333 9999999999999999999876 46999999988753 111
Q ss_pred hHHHHH--------HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----CC---CCCEEEE
Q 009856 317 QAVTKI--------HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----DQ---SRDIVLV 380 (523)
Q Consensus 317 ~~~~~l--------~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~~---~~~v~iI 380 (523)
+.++.. .+.| ....++.|||||++.| +...+..|..+++.-. .. ..++.||
T Consensus 395 elfg~~~~~~~~~~~g~~----~~a~~GtL~ldei~~l---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKF----ELAHGGTLFLEKVEYL---------SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HhcCCCCcCccCCCCCce----eECCCCEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 111111 0012 1234679999999987 5577777777775421 11 1267899
Q ss_pred EeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhc
Q 009856 381 LATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449 (523)
Q Consensus 381 ~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (523)
+||+.. ..+.+.|..|+ ..+.+..|+..+|.+ ++.+|+..+.. ..+..+
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~------------------~~~~~~- 521 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEK------------------RFSTRL- 521 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHH------------------HhCCCC-
Confidence 999763 35667777777 567777788777654 67777766432 111111
Q ss_pred cCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 450 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 450 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
.++++.+..|..+. |+| ++++|.+.++.++..+.+..|+.+++...+
T Consensus 522 ~~s~~a~~~L~~y~--WPG-NvreL~~~l~~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 522 KIDDDALARLVSYR--WPG-NDFELRSVIENLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred CcCHHHHHHHHcCC--CCC-hHHHHHHHHHHHHHhCCCCeecHHHCchhh
Confidence 48999999998775 555 999999999998888777788888876554
No 161
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-13 Score=142.34 Aligned_cols=224 Identities=18% Similarity=0.266 Sum_probs=151.7
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----eeEEecCCccc-------
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-----YAMMTGGDVAP------- 313 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~-----~~~v~~~~~~~------- 313 (523)
+.+.+-+...+.+..+ +..... +..|.++++|||||||||.+++.+++++..+ ++++||-....
T Consensus 17 ~~l~~Re~ei~~l~~~---l~~~~~-~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASF---LAPALR-GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHH---HHHHhc-CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3455555555555544 333223 3334469999999999999999999998433 88999865432
Q ss_pred ----------chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee
Q 009856 314 ----------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT 383 (523)
Q Consensus 314 ----------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt 383 (523)
.|......+..+++.........||+|||+|.|..... ..|..++........++.+|+.+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccccceeEEEEEEe
Confidence 12222333444444444555678999999999965322 56777776665556678889988
Q ss_pred CCC---CCCcHHHhcccc-ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHH
Q 009856 384 NRP---GDLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA 459 (523)
Q Consensus 384 n~~---~~l~~al~~Rf~-~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 459 (523)
|.. +.++|.+.++|. ..|.||+++.+|...|+....+.... ...+++..+..+
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~-----------------------~~~~~~~vl~li 220 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFS-----------------------AGVIDDDVLKLI 220 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhcc-----------------------CCCcCccHHHHH
Confidence 875 478899999775 46899999999999999999875432 113566677666
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHc---CCCCccCHHHHHHHHHHHHHhh
Q 009856 460 ARKTEGFSGREIAKLMASVQAAVYA---RPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 460 a~~t~G~sgrdI~~L~~~~~~a~~~---~~~~~it~e~~~~~l~~~~~~~ 506 (523)
|....-.+| |.+..+..+..|+.. .....++.+++..+.+..-+..
T Consensus 221 a~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 221 AALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred HHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHH
Confidence 654332233 777777666665543 4567999999999955554433
No 162
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.60 E-value=7.2e-14 Score=141.78 Aligned_cols=245 Identities=17% Similarity=0.194 Sum_probs=146.6
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-------CCCeeEE--ecC-Cc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAMM--TGG-DV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~v--~~~-~~ 311 (523)
..+|..++|++.++..+.-.+. ....+|+||+||||||||++|++++..+ ++++... .+. +.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~--------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI--------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh--------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 4578999999999887764221 0123579999999999999999999998 3322111 100 00
Q ss_pred -----------------cc--------chhhHHH-HH-HH--HHHH-HHhcCCceEEEEccchhhhhhcccccCcHHHHH
Q 009856 312 -----------------AP--------LGAQAVT-KI-HE--IFDW-AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRS 361 (523)
Q Consensus 312 -----------------~~--------~~~~~~~-~l-~~--~f~~-a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~ 361 (523)
.+ +|+.... .+ .+ .|.. ......+++|||||++.+ +...+.
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------~~~~q~ 146 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------EDHIVD 146 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------CHHHHH
Confidence 00 0100000 00 00 0100 001123468999999986 445666
Q ss_pred HHHHHHHHhC----------CCCCCEEEEEeeCCCC-CCcHHHhccccceEeecCCCH-HHHHHHHHHHHHhhccCCCC-
Q 009856 362 ALNALLFRTG----------DQSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEG- 428 (523)
Q Consensus 362 ~l~~ll~~~~----------~~~~~v~iI~ttn~~~-~l~~al~~Rf~~~i~~~~p~~-~er~~il~~~l~~~~~~~~~- 428 (523)
.|...+..-. ..+.++++|+|+|..+ .+++++++||...+.+++|.. +++.+|+.............
T Consensus 147 ~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 147 LLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred HHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 6666664321 1345788889988755 689999999999999998887 89999998864321000000
Q ss_pred ---CCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH---CCCCCHH-HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 429 ---DSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK---TEGFSGR-EIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 429 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---t~G~sgr-dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
..............+..+.-..+++..+.+++.. +.--|+| +|. |+.++++.++.++...++.+|+..+...
T Consensus 227 ~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 227 AKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred ccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 0000000011111222233334778777766543 3212343 555 8999999999999999999999988866
Q ss_pred HHH
Q 009856 502 KVE 504 (523)
Q Consensus 502 ~~~ 504 (523)
.+.
T Consensus 306 vl~ 308 (334)
T PRK13407 306 ALS 308 (334)
T ss_pred hhh
Confidence 554
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=6.4e-14 Score=143.62 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=129.8
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-------CeeEE-ec----
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-------DYAMM-TG---- 308 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-------~~~~v-~~---- 308 (523)
.+..|..++|++.+...+...+.. +..+..+||+||+|+|||++|+.+|+.+.+ |.... .|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 466789999999999998877653 334456999999999999999999999854 11100 00
Q ss_pred ----------CCcc---------------cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHH
Q 009856 309 ----------GDVA---------------PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSAL 363 (523)
Q Consensus 309 ----------~~~~---------------~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l 363 (523)
+++. .+..+....+...|........+.|+||||+|.|. ....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------~~aa 158 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------RNAA 158 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------HHHH
Confidence 0110 01122333334444333334456799999999862 3456
Q ss_pred HHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhh
Q 009856 364 NALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 443 (523)
Q Consensus 364 ~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 443 (523)
+.++..++.++.+++||+.|+.++.+.|.++||| ..+.|++|+.++...++...... .
T Consensus 159 naLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~--~------------------- 216 (351)
T PRK09112 159 NAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSS--Q------------------- 216 (351)
T ss_pred HHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcc--c-------------------
Confidence 6677777777788889999999999999999999 79999999999999998873211 0
Q ss_pred hhhhhccCCHHHHHHHHHHCCCCCHHHHHHHH
Q 009856 444 QKITIKDLSDNVIQEAARKTEGFSGREIAKLM 475 (523)
Q Consensus 444 ~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~ 475 (523)
.+++..+..++..+.| +++....++
T Consensus 217 ------~~~~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 217 ------GSDGEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred ------CCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 1456667777777766 554444444
No 164
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.58 E-value=4.5e-15 Score=158.88 Aligned_cols=219 Identities=21% Similarity=0.263 Sum_probs=146.8
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc--hhhH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQA 318 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~--~~~~ 318 (523)
.+..++|.+.....+...+........ ++|++|++||||+++|++++..+ +.||+.++|..+... ....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~------~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQA------SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCc------EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHh
Confidence 456788887776666665555444333 49999999999999999998875 578999999887531 1111
Q ss_pred HHHHHHHHHHH-------HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEee
Q 009856 319 VTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLAT 383 (523)
Q Consensus 319 ~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~tt 383 (523)
++.....|..+ .....+++|||||++.| +...+..|..++.... . ...++.||+||
T Consensus 215 fg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t 285 (457)
T PRK11361 215 FGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM---------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAAT 285 (457)
T ss_pred cCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeC
Confidence 11101111100 01234678999999997 4566777777765421 1 12368899999
Q ss_pred CCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 384 NRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 384 n~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
|.. ..+.+.+..|+ ..+.+..|+..+|.. ++.+|+..+.. ..+..+..++
T Consensus 286 ~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~------------------~~~~~~~~~~ 346 (457)
T PRK11361 286 NRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSS------------------ENQRDIIDID 346 (457)
T ss_pred CCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHH------------------HcCCCCCCcC
Confidence 864 35777788787 557777888777655 66677766533 1112223589
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++.+..+..+. |+| |++.|.+.+..++..+.+..|+.+++...+
T Consensus 347 ~~a~~~L~~~~--wpg-Nv~eL~~~~~~~~~~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 347 PMAMSLLTAWS--WPG-NIRELSNVIERAVVMNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHHcCC--CCC-cHHHHHHHHHHHHHhCCCCcccHHHChHhh
Confidence 99999998774 555 999999999999988888889888876433
No 165
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=1e-13 Score=141.00 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=111.2
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC--------eeEEecCCcccch
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD--------YAMMTGGDVAPLG 315 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~--------~~~v~~~~~~~~~ 315 (523)
+|++++|++.+.+.+...+.. +..++.+||+||+|+|||++|+.+|+.+.+. +..+...+-....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~ 74 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIG 74 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCC
Confidence 579999999998888776532 3344568999999999999999999987332 2222221111122
Q ss_pred hhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHH
Q 009856 316 AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA 392 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~a 392 (523)
. ..+..+...+. ......|++||++|.+. ....+.++..+++++.+++||++|+.++.+.|.
T Consensus 75 v---~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 75 V---DDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred H---HHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 2 23444443322 22346799999999862 345778888888888899999999999999999
Q ss_pred HhccccceEeecCCCHHHHHHHHHHHH
Q 009856 393 ITDRIDEVIEFPLPREEERFKLLKLYL 419 (523)
Q Consensus 393 l~~Rf~~~i~~~~p~~~er~~il~~~l 419 (523)
++||| .++.|++|+.++....+...+
T Consensus 140 I~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 140 IKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 99999 799999999998877776543
No 166
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.3e-13 Score=142.09 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=113.5
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCee-----------EE-ec
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-----------MM-TG 308 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~-----------~v-~~ 308 (523)
.+..|++|+|++.+++.+...+.. +..+..+||+||+|+||+++|.++|+.+-+.-- .+ .|
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 456789999999999998876553 344456999999999999999999998732100 00 00
Q ss_pred --------------CCcccc-----hh-------hHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHH
Q 009856 309 --------------GDVAPL-----GA-------QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQ 359 (523)
Q Consensus 309 --------------~~~~~~-----~~-------~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~ 359 (523)
+++..+ .. -....++.+...+. ....+.|++|||+|.+ .
T Consensus 87 ~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------------~ 154 (365)
T PRK07471 87 PDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------------N 154 (365)
T ss_pred CCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc------------C
Confidence 011000 00 01233444433322 2345679999999986 2
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHH
Q 009856 360 RSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYL 419 (523)
Q Consensus 360 ~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l 419 (523)
....+.|+..+...+.+++||++|+.++.+.+.+++|| ..+.|++|+.++...++....
T Consensus 155 ~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 ANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 35677788888878888899999999999999999999 899999999999998887653
No 167
>PRK15115 response regulator GlrR; Provisional
Probab=99.56 E-value=2.4e-14 Score=152.69 Aligned_cols=216 Identities=20% Similarity=0.339 Sum_probs=141.4
Q ss_pred CcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc--hhhHHHH
Q 009856 247 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQAVTK 321 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~--~~~~~~~ 321 (523)
.++|.......+...+....... ..++|+|++|||||++|++++... +.||+.++|..+... ....++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~------~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~ 208 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSD------VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH 208 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCC------CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 56776655554444333332221 249999999999999999999886 479999999886431 1111111
Q ss_pred HHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEeeCCC
Q 009856 322 IHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLATNRP 386 (523)
Q Consensus 322 l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~ttn~~ 386 (523)
....|..+. ....++.|||||++.| +...+..|..++..-. . ...++.||+||+..
T Consensus 209 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l---------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 209 ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM---------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CcCCCCCCccCCCCcEEECCCCEEEEEccccC---------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 111111110 1223578999999987 5566777777775421 1 12278899998753
Q ss_pred -------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 387 -------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 387 -------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
..+.+.+..|+ ..+.+..|+..+|.+ |+.+|+..+.. ..+..+..++++.
T Consensus 280 l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~------------------~~~~~~~~~~~~a 340 (444)
T PRK15115 280 LPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAAE------------------RHKPFVRAFSTDA 340 (444)
T ss_pred HHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHHH------------------HhCCCCCCcCHHH
Confidence 24556666677 567888888887755 66777766432 1111223589999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+..|..+. |+| |+++|.+.++.++..+.+..|+.+++...+
T Consensus 341 ~~~L~~~~--Wpg-NvreL~~~i~~~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 341 MKRLMTAS--WPG-NVRQLVNVIEQCVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHHHHhCC--CCC-hHHHHHHHHHHHHHhCCCCccChhhhhhhh
Confidence 99998875 544 999999999998888777888888775433
No 168
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.56 E-value=3.2e-13 Score=137.33 Aligned_cols=245 Identities=16% Similarity=0.148 Sum_probs=151.1
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-------CCCeeE---------Ee
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAM---------MT 307 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~---------v~ 307 (523)
.|..|+|++.++..+.-.+. .+...+++|.|+||||||+++++++..+ ++|+-. .+
T Consensus 2 pf~~ivgq~~~~~al~~~~~--------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI--------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred CccccccHHHHHHHHHHHhc--------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 57899999999988754322 1224579999999999999999999887 333320 00
Q ss_pred c-------------------CCcccchhhHHHHHHHHHHHHH--------------hcCCceEEEEccchhhhhhccccc
Q 009856 308 G-------------------GDVAPLGAQAVTKIHEIFDWAK--------------KSKKGLLLFIDEADAFLCERNSIH 354 (523)
Q Consensus 308 ~-------------------~~~~~~~~~~~~~l~~~f~~a~--------------~~~~~~vL~iDEid~l~~~~~~~~ 354 (523)
| .++. .+ .+.+.+.+..++.. ....+++|||||++.+
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP-~~-~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------- 143 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLP-LG-ATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------- 143 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCC-CC-CcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC--------
Confidence 0 0100 00 00011111111111 1123579999999987
Q ss_pred CcHHHHHHHHHHHHHh-------C---CCCCCEEEEEeeCCCC-CCcHHHhccccceEeecCCCH-HHHHHHHHHHHHhh
Q 009856 355 MSEAQRSALNALLFRT-------G---DQSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKY 422 (523)
Q Consensus 355 ~~~~~~~~l~~ll~~~-------~---~~~~~v~iI~ttn~~~-~l~~al~~Rf~~~i~~~~p~~-~er~~il~~~l~~~ 422 (523)
+...+..|..++..- + ..+.++++|+|+|..+ .+++++++||...+.++.|+. +++.+|+.......
T Consensus 144 -~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~ 222 (337)
T TIGR02030 144 -EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYD 222 (337)
T ss_pred -CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcc
Confidence 446666666666431 1 1234678888888655 799999999999999999986 88899998754321
Q ss_pred ccCCC----CCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 009856 423 LCSDE----GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR---KTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 495 (523)
Q Consensus 423 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~---~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~ 495 (523)
..... ...............+..+....++++.+..++. .+..-|+|--..++.++++.+...+...++.+|+
T Consensus 223 ~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv 302 (337)
T TIGR02030 223 ADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDI 302 (337)
T ss_pred cCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 00000 0000000001111112223333477777666544 4444467888888899999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 009856 496 REVVEYKVEEHH 507 (523)
Q Consensus 496 ~~~l~~~~~~~~ 507 (523)
..++...++...
T Consensus 303 ~~~a~~vL~HR~ 314 (337)
T TIGR02030 303 RRVAVLALRHRL 314 (337)
T ss_pred HHHHHHHHHHhC
Confidence 999999987544
No 169
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=2.2e-13 Score=137.86 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=111.9
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe----------eEEecCCccc
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY----------AMMTGGDVAP 313 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~----------~~v~~~~~~~ 313 (523)
.|++|+|++.+++.+...+.. +.-++.+||+||+|+||+++|.++|..+-+.- ...+.+|+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 478999999999999887653 33345799999999999999999999873221 0111112110
Q ss_pred c-------h-------------------hhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHH
Q 009856 314 L-------G-------------------AQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALN 364 (523)
Q Consensus 314 ~-------~-------------------~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~ 364 (523)
+ + .-....++.+...+.. ...+.|++||++|.|. ....|
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------~~aaN 142 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------EAAAN 142 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------HHHHH
Confidence 0 0 0011233444444332 3456899999999862 34667
Q ss_pred HHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHH
Q 009856 365 ALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYL 419 (523)
Q Consensus 365 ~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l 419 (523)
.||..++.++ +++||++|+.++.+.|.++||| ..+.|++|+.++...++....
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 7888888777 7789999999999999999999 999999999999988888753
No 170
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.53 E-value=4.4e-14 Score=151.54 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=146.9
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhHH
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQAV 319 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~~ 319 (523)
+..++|.......+...+........ .+++.|++||||+++|++++... +.||+.++|+.+.. +....+
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~------~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDI------TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCC------eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhc
Confidence 35688887777777666655443322 49999999999999999999876 46899999988743 111111
Q ss_pred HHHHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEeeC
Q 009856 320 TKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLATN 384 (523)
Q Consensus 320 ~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~ttn 384 (523)
+.....|..+. ....++.|||||++.| +...+..|..++.... . ...++.||+||+
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l---------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM---------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC---------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 11111111110 1223678999999987 5566777777775421 1 123678999987
Q ss_pred CC-------CCCcHHHhcccc-ceEeecCCC--HHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 385 RP-------GDLDSAITDRID-EVIEFPLPR--EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 385 ~~-------~~l~~al~~Rf~-~~i~~~~p~--~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
.. ..+.+.|..|+. ..|.+|+.. .++...++.+|+..+.. ..+..+..++++
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~~~ 339 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAR------------------ELDVEPKLLDPE 339 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHH------------------HhCCCCCCcCHH
Confidence 53 357778888873 244555544 34566688888776543 112222358999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 455 VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 455 ~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
.+..|..+ +|+| +++.|-+.+..++..+.+..|+.+++...+
T Consensus 340 a~~~L~~~--~wpg-NvreL~~~~~~~~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 340 ALERLKQL--RWPG-NVRQLENLCRWLTVMASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHhC--CCCC-hHHHHHHHHHHHHHhCCCCcccHHhchHHH
Confidence 99999887 3666 999999999999988888899998886554
No 171
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.53 E-value=1.2e-12 Score=124.97 Aligned_cols=210 Identities=21% Similarity=0.299 Sum_probs=148.4
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-CC------------------
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-GL------------------ 301 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-~~------------------ 301 (523)
.+.+|+.++++.+....+..+.. ...++|+++|||+|+||-|.+.++.+++ |.
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~--------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~k 79 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSS--------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKK 79 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcc--------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCc
Confidence 34567788888888877765533 2334589999999999999999998887 21
Q ss_pred ----------CeeEEecCCcccchhhHHHHHHHHHHHHH--------hcCCceEEEEccchhhhhhcccccCcHHHHHHH
Q 009856 302 ----------DYAMMTGGDVAPLGAQAVTKIHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSAL 363 (523)
Q Consensus 302 ----------~~~~v~~~~~~~~~~~~~~~l~~~f~~a~--------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l 363 (523)
..+.++.++.+....-. +.+++.... ..++..|++|.|+|.|. .+.+..|
T Consensus 80 klEistvsS~yHlEitPSDaG~~DRvV---iQellKevAQt~qie~~~qr~fKvvvi~ead~LT---------~dAQ~aL 147 (351)
T KOG2035|consen 80 KLEISTVSSNYHLEITPSDAGNYDRVV---IQELLKEVAQTQQIETQGQRPFKVVVINEADELT---------RDAQHAL 147 (351)
T ss_pred eEEEEEecccceEEeChhhcCcccHHH---HHHHHHHHHhhcchhhccccceEEEEEechHhhh---------HHHHHHH
Confidence 11223333333322211 222222211 12356799999999973 3455555
Q ss_pred HHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhh
Q 009856 364 NALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 443 (523)
Q Consensus 364 ~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 443 (523)
...+ +..++++.+|+.+|..+.+-++++||| ..|.+|.|+.++...++...+.+...
T Consensus 148 RRTM---EkYs~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l------------------- 204 (351)
T KOG2035|consen 148 RRTM---EKYSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGL------------------- 204 (351)
T ss_pred HHHH---HHHhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcc-------------------
Confidence 5554 445778899999999999999999999 99999999999999999999988765
Q ss_pred hhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCC-----CccCHHHHHHHHHHHH
Q 009856 444 QKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPD-----CVLDSQLFREVVEYKV 503 (523)
Q Consensus 444 ~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~-----~~it~e~~~~~l~~~~ 503 (523)
.++.+.+..||..+.| +++..+-.++++...+.. ..+..-|+...+....
T Consensus 205 ------~lp~~~l~rIa~kS~~----nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 205 ------QLPKELLKRIAEKSNR----NLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ------cCcHHHHHHHHHHhcc----cHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 4778899999999988 999988777777765322 3444445555555443
No 172
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.52 E-value=3e-13 Score=127.32 Aligned_cols=146 Identities=21% Similarity=0.309 Sum_probs=104.2
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCC------------------------eeEEecCCcccchhhHHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------------YAMMTGGDVAPLGAQAVTKIHEIFD 327 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~~f~ 327 (523)
+..+..+||+||||+|||++|+.++..+.+. +..+... -...+. ..+..+..
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~-~~~~~~---~~i~~i~~ 86 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE-GQSIKV---DQVRELVE 86 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc-cCcCCH---HHHHHHHH
Confidence 3444679999999999999999999987432 2222111 011222 23333333
Q ss_pred HHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeec
Q 009856 328 WAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFP 404 (523)
Q Consensus 328 ~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~ 404 (523)
.+.. .....|+||||+|.+.. ...+.++..++..+.+++||++|+.+..+.+++.+|+ .++.|+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~ 153 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC-QVLPFP 153 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc-EEeeCC
Confidence 3332 34567999999998732 2455667777777778889999988899999999999 799999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 405 LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 405 ~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
+|+.++...++... . ++++.+..++..+.|
T Consensus 154 ~~~~~~~~~~l~~~----g---------------------------i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ----G---------------------------ISEEAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc----C---------------------------CCHHHHHHHHHHcCC
Confidence 99999988877664 1 467788999999887
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.52 E-value=8.5e-13 Score=145.91 Aligned_cols=242 Identities=18% Similarity=0.233 Sum_probs=151.7
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC-----------------------
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----------------------- 300 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~----------------------- 300 (523)
.|..|||++.++..+.-.+. + +...+|||+||||||||++|++|+..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av---~-----~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---D-----PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---C-----CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 57899999999977754322 1 1224699999999999999999999872
Q ss_pred ------------CCeeEEecCCccc--chhhHHHHHHHHHH--------HHHhcCCceEEEEccchhhhhhcccccCcHH
Q 009856 301 ------------LDYAMMTGGDVAP--LGAQAVTKIHEIFD--------WAKKSKKGLLLFIDEADAFLCERNSIHMSEA 358 (523)
Q Consensus 301 ------------~~~~~v~~~~~~~--~~~~~~~~l~~~f~--------~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~ 358 (523)
.||+.+.++.... +|+.. +...+. .......+++|||||++.| +..
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d---~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------~~~ 141 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD---IERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------DDH 141 (633)
T ss_pred hhhcccccccCCCCeeeCCCCCcHHHcCCccc---HHHHhhcCCeeecCcceeecCCCeEEeChhhhC---------CHH
Confidence 3444443332111 11100 111110 0001123569999999987 446
Q ss_pred HHHHHHHHHHHh-------C---CCCCCEEEEEeeCCC-CCCcHHHhccccceEeecCCC-HHHHHHHHHHHHHhhccCC
Q 009856 359 QRSALNALLFRT-------G---DQSRDIVLVLATNRP-GDLDSAITDRIDEVIEFPLPR-EEERFKLLKLYLKKYLCSD 426 (523)
Q Consensus 359 ~~~~l~~ll~~~-------~---~~~~~v~iI~ttn~~-~~l~~al~~Rf~~~i~~~~p~-~~er~~il~~~l~~~~~~~ 426 (523)
.+..|..++..- + ....++++|+|+|.. ..+.++|++||+..|.++.|. .+++..++...+.....
T Consensus 142 ~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~-- 219 (633)
T TIGR02442 142 LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD-- 219 (633)
T ss_pred HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC--
Confidence 666666666431 0 123468899999864 368999999999989888775 57788888765442111
Q ss_pred CCCCCchhhh-------hhhhhhhhhhhhccCCHHHHHHHHHHC--CCC-CHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 009856 427 EGDSSSLKWG-------HLFKKQQQKITIKDLSDNVIQEAARKT--EGF-SGREIAKLMASVQAAVYARPDCVLDSQLFR 496 (523)
Q Consensus 427 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~-sgrdI~~L~~~~~~a~~~~~~~~it~e~~~ 496 (523)
.......|. ..............++++.+..|+..+ -|. |.|-...++..+.+.+...+...++.+||.
T Consensus 220 -~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~ 298 (633)
T TIGR02442 220 -PEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVR 298 (633)
T ss_pred -cHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHH
Confidence 000000110 000001111222357888888876654 345 567777788888888888899999999999
Q ss_pred HHHHHHHHhhhh
Q 009856 497 EVVEYKVEEHHQ 508 (523)
Q Consensus 497 ~~l~~~~~~~~~ 508 (523)
.++..+++....
T Consensus 299 ~A~~lvL~hR~~ 310 (633)
T TIGR02442 299 EAAELVLPHRRR 310 (633)
T ss_pred HHHHHHhhhhcc
Confidence 999999986543
No 174
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.52 E-value=1.7e-13 Score=134.85 Aligned_cols=214 Identities=18% Similarity=0.281 Sum_probs=155.5
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
.....|+.+|+.+..++.+..-+..+.....+ +||.|.+||||-.+|++.+..+ ..||+.+||+.+.....
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAP------LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAP------LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhccCCC------eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 45678999999988888877766666665555 9999999999999999988776 67999999998765221
Q ss_pred --hHHH------HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-----hCCC---CCCEEEE
Q 009856 317 --QAVT------KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----TGDQ---SRDIVLV 380 (523)
Q Consensus 317 --~~~~------~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----~~~~---~~~v~iI 380 (523)
+.++ .-.++|..| .++-+|+|||..+ ++..+..|..|++. ++.+ .-++.||
T Consensus 272 EsElFG~apg~~gk~GffE~A----ngGTVlLDeIgEm---------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQA----NGGTVLLDEIGEM---------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HHHHhcCCCCCCCccchhhhc----cCCeEEeehhhhc---------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 2221 124556444 3678999999765 77889999999854 2222 2378999
Q ss_pred EeeCCC-------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhc
Q 009856 381 LATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449 (523)
Q Consensus 381 ~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (523)
+||..+ ..+...+.-|+ .++.+..|...+|.. +.++|+.+... ..+....
T Consensus 339 catq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~------------------elg~p~p 399 (511)
T COG3283 339 CATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSD------------------ELGVPRP 399 (511)
T ss_pred ecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHH------------------HhCCCCC
Confidence 999653 35667777788 788888888877655 67777766544 3333445
Q ss_pred cCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 009856 450 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494 (523)
Q Consensus 450 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~ 494 (523)
.++++.+..+..+. |+| ++++|-|++..|+-..++..++.++
T Consensus 400 kl~~~~~~~L~~y~--WpG-NVRqL~N~iyRA~s~~Eg~~l~i~~ 441 (511)
T COG3283 400 KLAADLLTVLTRYA--WPG-NVRQLKNAIYRALTLLEGYELRIED 441 (511)
T ss_pred ccCHHHHHHHHHcC--CCc-cHHHHHHHHHHHHHHhccCccchhh
Confidence 68888998887763 555 9999999988888766665554443
No 175
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.51 E-value=1.2e-12 Score=136.99 Aligned_cols=241 Identities=14% Similarity=0.065 Sum_probs=141.4
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCC--cccchh-hHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGD--VAPLGA-QAVT 320 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~--~~~~~~-~~~~ 320 (523)
..++|.+++.+.+...+.+ ..++||+||||||||++|++||..++. +|..+.+.. ...+.| ....
T Consensus 20 ~~i~gre~vI~lll~aala----------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~ 89 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 89 (498)
T ss_pred hhccCcHHHHHHHHHHHcc----------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh
Confidence 5689999888887665432 235999999999999999999998753 455444331 111111 1011
Q ss_pred HH--HHHHHHHHh--cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----C---CCCCEEEEEeeCCCC--
Q 009856 321 KI--HEIFDWAKK--SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----D---QSRDIVLVLATNRPG-- 387 (523)
Q Consensus 321 ~l--~~~f~~a~~--~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~---~~~~v~iI~ttn~~~-- 387 (523)
.. .+.|..... .....+||+|||..+ ++..+..|..++..-. . .....+|++|||...
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra---------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~ 160 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEA 160 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccC---------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCccc
Confidence 11 112211000 001238999999875 4456666666653311 1 111224455566432
Q ss_pred -CCcHHHhccccceEeecCCC-HHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH---
Q 009856 388 -DLDSAITDRIDEVIEFPLPR-EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--- 462 (523)
Q Consensus 388 -~l~~al~~Rf~~~i~~~~p~-~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--- 462 (523)
.+.+++.+||-..+.+|+|+ .++...|+......... ............+..- +..+.-..+++..++.|...
T Consensus 161 g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~-~~~~~~vis~eel~~l-q~~v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 161 DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN-PVPASLQITDEEYQQW-QKEIGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred CCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccC-CCcccCCCCHHHHHHH-HHHhcceeCCHHHHHHHHHHHHH
Confidence 34469999998889999997 46667777764221100 0000111111111111 22222224677766665433
Q ss_pred ---C---CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhh
Q 009856 463 ---T---EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQ 508 (523)
Q Consensus 463 ---t---~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~ 508 (523)
+ ...|+|-..+++..+++.|+.++...++++|+. ++..++.....
T Consensus 239 lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl~ 289 (498)
T PRK13531 239 LDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDAQ 289 (498)
T ss_pred HhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCHH
Confidence 2 238999999999999999999999999999999 77777665433
No 176
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.50 E-value=7.7e-12 Score=124.30 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=125.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCC-CeeE--EecCCccc----------ch-----h---hHHHHHHHHHHHHHhcCCc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGL-DYAM--MTGGDVAP----------LG-----A---QAVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~-~~~~--v~~~~~~~----------~~-----~---~~~~~l~~~f~~a~~~~~~ 335 (523)
.++|+||||+|||++++.++..+.. .+.. +....... ++ . .....+...+........+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999998752 2221 11111100 00 0 0111222222222223456
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC--CCC----CcHHHhccccceEeecCCCHH
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR--PGD----LDSAITDRIDEVIEFPLPREE 409 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~--~~~----l~~al~~Rf~~~i~~~~p~~~ 409 (523)
.+|+|||++.+. ......+..+..........+.||++... .+. -...+.+|+...+.+++++.+
T Consensus 125 ~vliiDe~~~l~---------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 125 ALLVVDEAQNLT---------PELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred eEEEEECcccCC---------HHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 799999999862 23334444433322222333444555432 111 123567788889999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 009856 410 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 489 (523)
Q Consensus 410 er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~ 489 (523)
+...++...+........ ..++++.++.|+..+.|++. .|..++..+...++..+...
T Consensus 196 e~~~~l~~~l~~~g~~~~---------------------~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~~~~ 253 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDA---------------------PVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEEKRE 253 (269)
T ss_pred HHHHHHHHHHHHcCCCCC---------------------CCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcCCCC
Confidence 999999999875432000 13789999999999999654 79999998888888788889
Q ss_pred cCHHHHHHHHHHH
Q 009856 490 LDSQLFREVVEYK 502 (523)
Q Consensus 490 it~e~~~~~l~~~ 502 (523)
||.+++..++.+.
T Consensus 254 i~~~~v~~~~~~~ 266 (269)
T TIGR03015 254 IGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998874
No 177
>PRK04132 replication factor C small subunit; Provisional
Probab=99.50 E-value=4e-13 Score=149.82 Aligned_cols=176 Identities=22% Similarity=0.241 Sum_probs=134.1
Q ss_pred CCceEEEEc--CCCCchHHHHHHHHHHh-----CCCeeEEecCCcccchhhHHHHHHHHHHHHHhcC-----CceEEEEc
Q 009856 274 PFRNMLFYG--PPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSK-----KGLLLFID 341 (523)
Q Consensus 274 p~~~vLL~G--ppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~-----~~~vL~iD 341 (523)
|.-+-++.| |++.||||+|++||+.+ +.+++.+|+++.... + .++.....+.... ++.|+|||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--d---~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI--N---VIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--H---HHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 444567789 99999999999999997 567999999874322 2 3333333222111 24799999
Q ss_pred cchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHh
Q 009856 342 EADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKK 421 (523)
Q Consensus 342 Eid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~ 421 (523)
|+|.| +. ...+.|+..++.++.++.||++||.+..+.++++||| ..+.|++|+.++....+...+.+
T Consensus 638 EaD~L---------t~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 638 EADAL---------TQ---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred CcccC---------CH---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 99997 32 3455566666767889999999999999999999999 89999999999999999888776
Q ss_pred hccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 009856 422 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREV 498 (523)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~ 498 (523)
... .++++.+..|+..+.| |++.+++.++.++... ..||.+++..+
T Consensus 705 Egi-------------------------~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~~--~~It~~~V~~~ 750 (846)
T PRK04132 705 EGL-------------------------ELTEEGLQAILYIAEG----DMRRAINILQAAAALD--DKITDENVFLV 750 (846)
T ss_pred cCC-------------------------CCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 433 3688899999999999 9999999888877543 35666555443
No 178
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.50 E-value=5.7e-13 Score=135.92 Aligned_cols=148 Identities=26% Similarity=0.374 Sum_probs=104.4
Q ss_pred CcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC------------------------CC
Q 009856 247 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG------------------------LD 302 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~------------------------~~ 302 (523)
.+++.......+...+... +..+..+||+||||||||++|.++|+.+. .+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhc------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 3555555555554433321 11222499999999999999999999986 36
Q ss_pred eeEEecCCcccc--hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEE
Q 009856 303 YAMMTGGDVAPL--GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLV 380 (523)
Q Consensus 303 ~~~v~~~~~~~~--~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI 380 (523)
++.++.++.... ..+....+...+.......+..|++|||+|.+. ....+.++..+..++.+++||
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhccCCCCeEEE
Confidence 777777665542 344444444444332222456799999999963 367788888888899999999
Q ss_pred EeeCCCCCCcHHHhccccceEeecCCCHHHHHH
Q 009856 381 LATNRPGDLDSAITDRIDEVIEFPLPREEERFK 413 (523)
Q Consensus 381 ~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~ 413 (523)
++||.+..+-+.+.||| ..+.|++|+......
T Consensus 144 l~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 144 LITNDPSKILPTIRSRC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred EEcCChhhccchhhhcc-eeeecCCchHHHHHH
Confidence 99999999999999999 899998865544433
No 179
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=9.4e-13 Score=133.92 Aligned_cols=134 Identities=25% Similarity=0.331 Sum_probs=98.1
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCC------------------------eeEEecCCc-ccchhhHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------------YAMMTGGDV-APLGAQAVTKIHEIF 326 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~------------------------~~~v~~~~~-~~~~~~~~~~l~~~f 326 (523)
+..++.+||+||+|+|||++|+++|+.+.+. +..+..... ...+.+....+...+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 3445579999999999999999999988441 222211111 112333444443333
Q ss_pred HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCC
Q 009856 327 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 327 ~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p 406 (523)
.......+..|++||++|.|. ....|.||..+++++.+++||++|+.++.+.|.++||| ..+.|++|
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~~~ 165 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQACPLP 165 (328)
T ss_pred hhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeCCCc
Confidence 332233456799999999862 46788888888988899999999999999999999999 78999999
Q ss_pred CHHHHHHHHHHH
Q 009856 407 REEERFKLLKLY 418 (523)
Q Consensus 407 ~~~er~~il~~~ 418 (523)
+.++....+...
T Consensus 166 ~~~~~~~~L~~~ 177 (328)
T PRK05707 166 SNEESLQWLQQA 177 (328)
T ss_pred CHHHHHHHHHHh
Confidence 999888777654
No 180
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.49 E-value=1.2e-12 Score=131.08 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=51.8
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC--CCeeEEecCCc
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 311 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~--~~~~~v~~~~~ 311 (523)
...+....+.+||+..+.++..-++..+...+.. .+++||.||||||||.+|-++|+++| .||+.++++++
T Consensus 16 ~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~a---Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 16 NGEARYIADGLVGQEKAREAAGIIVDMIKEGKIA---GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp TS-B-SEETTEES-HHHHHHHHHHHHHHHTT--T---T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred CCCEeeccccccChHHHHHHHHHHHHHHhccccc---CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 3455666789999999999998888877765433 35699999999999999999999996 67777765553
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.49 E-value=4.3e-13 Score=134.37 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=98.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----chhhHH---------HHHHHHHHHHHhcCCceEEEEcc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----LGAQAV---------TKIHEIFDWAKKSKKGLLLFIDE 342 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----~~~~~~---------~~l~~~f~~a~~~~~~~vL~iDE 342 (523)
++|||.||||||||++++.+|..++.|++.+++..... +|.... .-..+.+.+|. ..+++|++||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~--~~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL--QHNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH--hCCeEEEech
Confidence 45999999999999999999999999999998765432 121110 00122334443 3468899999
Q ss_pred chhhhhhcccccCcHHHHHHHHHHHHH-----hC------CCCCCEEEEEeeCCCC------------CCcHHHhccccc
Q 009856 343 ADAFLCERNSIHMSEAQRSALNALLFR-----TG------DQSRDIVLVLATNRPG------------DLDSAITDRIDE 399 (523)
Q Consensus 343 id~l~~~~~~~~~~~~~~~~l~~ll~~-----~~------~~~~~v~iI~ttn~~~------------~l~~al~~Rf~~ 399 (523)
+|.. ++.....|+.+|+. +. ....+++||+|+|..+ .++.++++||..
T Consensus 143 in~a---------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAG---------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhcc---------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9986 45667788888863 11 1345799999999754 478999999977
Q ss_pred eEeecCCCHHHHHHHHHHHH
Q 009856 400 VIEFPLPREEERFKLLKLYL 419 (523)
Q Consensus 400 ~i~~~~p~~~er~~il~~~l 419 (523)
++.+++|+.++-..|+....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhc
Confidence 78999999999999987764
No 182
>PHA02244 ATPase-like protein
Probab=99.49 E-value=1.9e-12 Score=131.01 Aligned_cols=122 Identities=30% Similarity=0.351 Sum_probs=84.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc-ccchh--hHHHHH-HHHHHHHHhcCCceEEEEccchhhhhhccc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGA--QAVTKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNS 352 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~-~~~~~--~~~~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~~~~ 352 (523)
+|||+||||||||++|+++|..++.||+.+++..- ..+.+ ...+.. ...|..+ ...+++|||||++.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A--~~~GgvLiLDEId~a------ 192 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA--FKKGGLFFIDEIDAS------ 192 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH--hhcCCEEEEeCcCcC------
Confidence 39999999999999999999999999999874210 00100 000011 1122222 345789999999986
Q ss_pred ccCcHHHHHHHHHHHHH-----hC---CCCCCEEEEEeeCCC-----------CCCcHHHhccccceEeecCCCHHH
Q 009856 353 IHMSEAQRSALNALLFR-----TG---DQSRDIVLVLATNRP-----------GDLDSAITDRIDEVIEFPLPREEE 410 (523)
Q Consensus 353 ~~~~~~~~~~l~~ll~~-----~~---~~~~~v~iI~ttn~~-----------~~l~~al~~Rf~~~i~~~~p~~~e 410 (523)
++.....|+.++.. .+ ..+.++.||+|+|.+ ..+++++++|| .+|+|+.|+..|
T Consensus 193 ---~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 193 ---IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred ---CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH
Confidence 44556667777642 11 134689999999973 46899999999 789999998433
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=1.3e-12 Score=133.55 Aligned_cols=153 Identities=22% Similarity=0.196 Sum_probs=109.0
Q ss_pred cCCCccc-CHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe--eEE--------------
Q 009856 244 NNGDIIL-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY--AMM-------------- 306 (523)
Q Consensus 244 ~~~~vig-~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~--~~v-------------- 306 (523)
.|+.|+| ++.+.+.+...+.. +..++.+||+||+|+|||++|+++|+.+-++- -..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 3578888 88898888776542 44455689999999999999999999874321 000
Q ss_pred ecCCcccc---hh-hHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEE
Q 009856 307 TGGDVAPL---GA-QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVL 379 (523)
Q Consensus 307 ~~~~~~~~---~~-~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~i 379 (523)
+.+++..+ +. -....+..+..... ......|++||++|.+. ....+.|+..+++++.+++|
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcCCCCCceE
Confidence 00111110 00 11233444443332 23345799999999862 44678888889989999999
Q ss_pred EEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHH
Q 009856 380 VLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLK 416 (523)
Q Consensus 380 I~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~ 416 (523)
|++|+.+..+.|.++||+ .+++|++|+.++....+.
T Consensus 144 Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 144 ILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 999999999999999999 999999999998866665
No 184
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.48 E-value=7.3e-12 Score=120.39 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=98.1
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC-------------CCCCcHHHhccccceE
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-------------PGDLDSAITDRIDEVI 401 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~-------------~~~l~~al~~Rf~~~i 401 (523)
|+||||||++.| .-..+..+-..+.++-.+ ++|++||+ |..+++.+++|+ .+|
T Consensus 297 PGVLFIDEVhML------------DiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHML------------DIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LII 362 (456)
T ss_pred CcceEeeehhhh------------hhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEE
Confidence 468999999875 123333444444444444 46677774 457899999999 888
Q ss_pred eecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 009856 402 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 481 (523)
Q Consensus 402 ~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a 481 (523)
..-+++.++.+.|+......... .++++.+..++.....-|.|-.-+|+.-+...
T Consensus 363 rt~~y~~~e~r~Ii~~Ra~~E~l-------------------------~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ 417 (456)
T KOG1942|consen 363 RTLPYDEEEIRQIIKIRAQVEGL-------------------------QVEEEALDLLAEIGTSTSLRYAVQLLTPASIL 417 (456)
T ss_pred eeccCCHHHHHHHHHHHHhhhcc-------------------------eecHHHHHHHHhhccchhHHHHHHhcCHHHHH
Confidence 88889999999999988765544 47888999999886666777777777655566
Q ss_pred HHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 482 VYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 482 ~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
+...+...|..++++++-+-|....
T Consensus 418 ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 418 AKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred HHHcCCceeecccHHHHHHHHHhch
Confidence 6666778999999999998887654
No 185
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.47 E-value=5.4e-12 Score=124.29 Aligned_cols=221 Identities=19% Similarity=0.253 Sum_probs=148.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCCccc---
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGDVAP--- 313 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~~~~--- 313 (523)
+..||.+.+.+.+..+...+..+.....| ++||+|++|.|||++++.++... ..|++.+....-..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp--~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMP--NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCC--ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 78999999999999988877776655444 69999999999999999998765 24666665543221
Q ss_pred chh-------------hHHHHH-HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC-CCCEE
Q 009856 314 LGA-------------QAVTKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ-SRDIV 378 (523)
Q Consensus 314 ~~~-------------~~~~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~v~ 378 (523)
+.. .....+ ..+....+.. ...+|+|||++.++.. +...+..+..++..+++. .-+++
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~-~vrmLIIDE~H~lLaG------s~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRL-GVRMLIIDEFHNLLAG------SYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHc-CCcEEEeechHHHhcc------cHHHHHHHHHHHHHHhhccCCCeE
Confidence 000 111111 1112222222 3569999999997643 223345555555555533 23444
Q ss_pred EEEeeCCC--CCCcHHHhccccceEeecCCCH-HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 379 LVLATNRP--GDLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 379 iI~ttn~~--~~l~~al~~Rf~~~i~~~~p~~-~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
.|+|-... =.-|+.+.+|| ..+.+|.... ++...++..|-...+...+.. -.+++.
T Consensus 185 ~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~--------------------l~~~~l 243 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRKPSN--------------------LASPEL 243 (302)
T ss_pred EeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC--------------------CCCHHH
Confidence 44443222 24578999999 6777776664 566778877776665532222 135566
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 497 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~ 497 (523)
...|-..|.|..| +|..|++.+...++.++...||.+.++.
T Consensus 244 a~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 244 ARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 7889999999888 9999999888888889999999999987
No 186
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.46 E-value=2.2e-12 Score=114.61 Aligned_cols=123 Identities=37% Similarity=0.482 Sum_probs=81.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhHHHHH---HHHHHHHHhcCCceEEEEccchhhh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKI---HEIFDWAKKSKKGLLLFIDEADAFL 347 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~~~~l---~~~f~~a~~~~~~~vL~iDEid~l~ 347 (523)
+.++++|+||||||||++++.++..+ +.+++.+++.............. ............+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34579999999999999999999998 88888888766543211111000 1111222233457899999999862
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCC---CCCEEEEEeeCCCC--CCcHHHhccccceEeecC
Q 009856 348 CERNSIHMSEAQRSALNALLFRTGDQ---SRDIVLVLATNRPG--DLDSAITDRIDEVIEFPL 405 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~v~iI~ttn~~~--~l~~al~~Rf~~~i~~~~ 405 (523)
......+..++...... ..++.+|+++|... .+++.+.+||+..+.+++
T Consensus 98 ---------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 98 ---------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred ---------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 12333444444444322 46788999998776 788999999987777763
No 187
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.45 E-value=4.2e-12 Score=137.14 Aligned_cols=250 Identities=18% Similarity=0.184 Sum_probs=148.2
Q ss_pred CCcccCHHHHHHHHHHHHHHhcc-hhcC---CCCceEEEEcCCCCchHHHHHHHHHHhCCC-eeEEecCCcccchhhHH-
Q 009856 246 GDIILHPSLQRRIQHLAKATANT-KIHQ---APFRNMLFYGPPGTGKTMVAREIARKSGLD-YAMMTGGDVAPLGAQAV- 319 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~-~~~~---~p~~~vLL~GppGtGKT~lA~ala~~l~~~-~~~v~~~~~~~~~~~~~- 319 (523)
..++|++.++..+.-.+..-... ...+ ....+|||+|+||||||++|+++++.+... |+...+.....+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 56889888876664332211000 0001 112379999999999999999999987543 22211111111100000
Q ss_pred HHHHHHH---HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEEEeeCCC
Q 009856 320 TKIHEIF---DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLVLATNRP 386 (523)
Q Consensus 320 ~~l~~~f---~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----------~~~~~v~iI~ttn~~ 386 (523)
....+-| ..+.....+++++|||++.+ +...+..|...+..-. ..+.++.||+|+|+.
T Consensus 283 ~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l---------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 283 DPETREFTLEGGALVLADNGVCCIDEFDKM---------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred ccCcceEEecCccEEecCCCEEEEechhhC---------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 0000000 00111234679999999987 4456666666653311 123578899999975
Q ss_pred C-------------CCcHHHhccccceEe-ecCCCHHHHHHHHHHHHHhhccCCC--CCCC--chhhhhhhhhhhhhhh-
Q 009856 387 G-------------DLDSAITDRIDEVIE-FPLPREEERFKLLKLYLKKYLCSDE--GDSS--SLKWGHLFKKQQQKIT- 447 (523)
Q Consensus 387 ~-------------~l~~al~~Rf~~~i~-~~~p~~~er~~il~~~l~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 447 (523)
. .|++++++|||.++. .+.|+.+....|+.+.+..+....+ .... ......+..-......
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~ 433 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREK 433 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhc
Confidence 3 589999999987654 4788999999999998765432111 0000 0111111111111111
Q ss_pred -hccCCHHHHHHHHHH---------------CCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 448 -IKDLSDNVIQEAARK---------------TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 448 -~~~~~~~~l~~la~~---------------t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
...++++..+.|... .-|.|+|.+..|+..+++.|.......++.+|+..++.-+..
T Consensus 434 ~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 434 IKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 124688776665431 125689999999999999999999999999999999987643
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=4.4e-12 Score=138.18 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=130.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeE-EecC---Ccc---
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM-MTGG---DVA--- 312 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~-v~~~---~~~--- 312 (523)
..+..+++++|++.....|..++..... ...+...++|+||||||||++++.+|..++..+.. .+.. ...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~---~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~ 154 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVL---ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDH 154 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhccc---ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccc
Confidence 4577889999999998888776654322 12333459999999999999999999998765533 1111 000
Q ss_pred ----c------chhhHHHHHHHHHHHHHh---------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHH-HhCC
Q 009856 313 ----P------LGAQAVTKIHEIFDWAKK---------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLF-RTGD 372 (523)
Q Consensus 313 ----~------~~~~~~~~l~~~f~~a~~---------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~-~~~~ 372 (523)
. ........+..++..+.. .....||||||++.++.. ....+..++. ....
T Consensus 155 ~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~lq~lLr~~~~e 225 (637)
T TIGR00602 155 KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTRALHEILRWKYVS 225 (637)
T ss_pred ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHHHHHHHHHHHhhc
Confidence 0 001222333444444431 124569999999987532 1113334443 2222
Q ss_pred CCCCEEEEEeeC-CCC--------C------CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhh
Q 009856 373 QSRDIVLVLATN-RPG--------D------LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKW 435 (523)
Q Consensus 373 ~~~~v~iI~ttn-~~~--------~------l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~ 435 (523)
...+.||++++ .+. . +.+++++ |+ .+|.|++++.....+.|...+..........
T Consensus 226 -~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~------ 297 (637)
T TIGR00602 226 -IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK------ 297 (637)
T ss_pred -CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc------
Confidence 22333444332 111 1 3478887 56 6899999999999999999887643200000
Q ss_pred hhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHc
Q 009856 436 GHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 484 (523)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~ 484 (523)
....+++.+..|+..+.| ||+.+++.++.++..
T Consensus 298 ------------~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 298 ------------IKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSK 330 (637)
T ss_pred ------------cccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhc
Confidence 001356789999998888 999999999998764
No 189
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.44 E-value=5.3e-13 Score=142.22 Aligned_cols=216 Identities=19% Similarity=0.268 Sum_probs=139.2
Q ss_pred CcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhHHHH
Q 009856 247 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQAVTK 321 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~~~~ 321 (523)
.++|.+.....+...+..+... ...++|+|++||||+++|++++..+ +.||+.++|+.+.. +....++.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 4677666555554443333222 2359999999999999999998776 47899999987643 11111111
Q ss_pred HHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEeeCCC
Q 009856 322 IHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLATNRP 386 (523)
Q Consensus 322 l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~v~iI~ttn~~ 386 (523)
....|..+. ....+++|||||++.| +...+..|..++..-. . ...++.+|+||+..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l---------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDI---------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCCCcCCCCcCCCCceeECCCCEEEEeccccC---------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC
Confidence 111111110 1224678999999997 4466666666664321 1 12367788888653
Q ss_pred -------CCCcHHHhccccceEeecCCCHHHHHH----HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHH
Q 009856 387 -------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 455 (523)
Q Consensus 387 -------~~l~~al~~Rf~~~i~~~~p~~~er~~----il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (523)
..+.+.|..|+ ..+.+..|+..+|.+ ++.+|+..+.. ..+.....++++.
T Consensus 285 ~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~~~a 345 (441)
T PRK10365 285 LAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAE------------------RNRKAVKGFTPQA 345 (441)
T ss_pred HHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHHHHHHHHH------------------HhCCCCCCcCHHH
Confidence 34666676677 567777777776644 77777776532 1111223589999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
+..|..+. |+| |++.|.+.++.++..+.+..|+.+++...+
T Consensus 346 ~~~L~~~~--wpg-N~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 346 MDLLIHYD--WPG-NIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred HHHHHhCC--CCC-HHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 99998875 444 999999999999988777888888875443
No 190
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=4.4e-12 Score=129.91 Aligned_cols=241 Identities=20% Similarity=0.194 Sum_probs=143.5
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----chhhHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----LGAQAVTK 321 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----~~~~~~~~ 321 (523)
..++|.+.+...+...+.. + +++||-||||||||++|+.+|..++.+|+.+.|.+-.. .|......
T Consensus 24 ~~~~g~~~~~~~~l~a~~~-------~---~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 24 KVVVGDEEVIELALLALLA-------G---GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred CeeeccHHHHHHHHHHHHc-------C---CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhh
Confidence 3477766666665443321 2 35999999999999999999999999999999875322 22111111
Q ss_pred H---HHHHHHHHhcCCc---eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh----CCC-----CCCEEEEEeeC--
Q 009856 322 I---HEIFDWAKKSKKG---LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----GDQ-----SRDIVLVLATN-- 384 (523)
Q Consensus 322 l---~~~f~~a~~~~~~---~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~~-----~~~v~iI~ttn-- 384 (523)
. ...|.+...--.. +++|+|||+.. ++..+..|..++... ... +..+++|+|+|
T Consensus 94 ~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 94 LLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhccCCeEEEecCCcccccceEEEEeccccC---------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 1 1111111100011 39999999885 446667777776551 122 25778888889
Q ss_pred ---CCCCCcHHHhccccceEeecCCCH-HHHHHHHHHHHHhhccC-CCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHH
Q 009856 385 ---RPGDLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLCS-DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA 459 (523)
Q Consensus 385 ---~~~~l~~al~~Rf~~~i~~~~p~~-~er~~il~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 459 (523)
....+++++++||...+.+++|+. .+...++.......... ................ ...+....++++..+.+
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRL-QKEVKKVPVSDEVIDYI 243 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHH-HhhhccCCchHHHHHHH
Confidence 345789999999998999999954 44444444433211100 0000000011011111 11111234555555553
Q ss_pred HH---HC-------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 460 AR---KT-------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 460 a~---~t-------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
.. .+ .|-|++....++..+.+.+..........+++........+..
T Consensus 244 ~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~ 300 (329)
T COG0714 244 VTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAHR 300 (329)
T ss_pred HHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhhh
Confidence 32 22 2446888888888888888887788888888888877776543
No 191
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.44 E-value=8.7e-12 Score=117.12 Aligned_cols=191 Identities=19% Similarity=0.324 Sum_probs=136.2
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhh
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQ 317 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~ 317 (523)
+...+.+++|-+..++.+..-...+.. +.|..+|||+|..|||||++++++...+ |..++.|+-.++
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~----G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl------ 124 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAE----GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL------ 124 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHc----CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH------
Confidence 345678999999999998765555443 6677899999999999999999998887 445566555443
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-hCCCCCCEEEEEeeCCCCCCc------
Q 009856 318 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-TGDQSRDIVLVLATNRPGDLD------ 390 (523)
Q Consensus 318 ~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~v~iI~ttn~~~~l~------ 390 (523)
..+-.+++..+..+...|||+|++-- ......-..|..+|.. +...+.||+|.+|+|+...++
T Consensus 125 --~~Lp~l~~~Lr~~~~kFIlFcDDLSF--------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn 194 (287)
T COG2607 125 --ATLPDLVELLRARPEKFILFCDDLSF--------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDN 194 (287)
T ss_pred --hhHHHHHHHHhcCCceEEEEecCCCC--------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhC
Confidence 34555666666777788999999832 1122334455555543 456788999999999754332
Q ss_pred --------H--------HHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 391 --------S--------AITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 391 --------~--------al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
+ +|-+||+..+.|++++.++-..|+.+|++++.+ +++++
T Consensus 195 ~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l-------------------------~~~~e 249 (287)
T COG2607 195 EGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGL-------------------------DISDE 249 (287)
T ss_pred CCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCC-------------------------CCCHH
Confidence 1 234599999999999999999999999998876 34444
Q ss_pred HHHHH----HHHCCCCCHHHHHHHHH
Q 009856 455 VIQEA----ARKTEGFSGREIAKLMA 476 (523)
Q Consensus 455 ~l~~l----a~~t~G~sgrdI~~L~~ 476 (523)
.+..= |..-.|-|||--.+.+.
T Consensus 250 ~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 250 ELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 43332 33345778877766665
No 192
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.42 E-value=8e-12 Score=133.04 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=136.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHh----c----------------------chhcCCCCceEEEEcCCCCchHHHHH
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATA----N----------------------TKIHQAPFRNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~----~----------------------~~~~~~p~~~vLL~GppGtGKT~lA~ 293 (523)
+.+..|.+++|.+.+-..+...+..-. . .....++-+-+||+||||-||||||+
T Consensus 265 y~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAH 344 (877)
T KOG1969|consen 265 YRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAH 344 (877)
T ss_pred cChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHH
Confidence 356778999999888777655443211 0 01112333568899999999999999
Q ss_pred HHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHH-H--HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-
Q 009856 294 EIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDW-A--KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR- 369 (523)
Q Consensus 294 ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~-a--~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~- 369 (523)
.+|+..|+.++.+|.++--... .....+..+... . .....|..|+|||||-- ....-+++..++..
T Consensus 345 ViAkqaGYsVvEINASDeRt~~-~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------~~~~Vdvilslv~a~ 414 (877)
T KOG1969|consen 345 VIAKQAGYSVVEINASDERTAP-MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------PRAAVDVILSLVKAT 414 (877)
T ss_pred HHHHhcCceEEEecccccccHH-HHHHHHHHHHhhccccccCCCcceEEEecccCC---------cHHHHHHHHHHHHhh
Confidence 9999999999999998853311 111111111111 1 01245678889999852 22223334333331
Q ss_pred ----hCCCCC-------------CEEEEEeeCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCC
Q 009856 370 ----TGDQSR-------------DIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDS 430 (523)
Q Consensus 370 ----~~~~~~-------------~v~iI~ttn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~ 430 (523)
.+.... .-.||+.||. ...|+|+. -|..+|.|.+|+..-..+-|+..+.+...
T Consensus 415 ~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m------ 486 (877)
T KOG1969|consen 415 NKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM------ 486 (877)
T ss_pred cchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC------
Confidence 121110 1258899998 56788865 47799999999998888777777766544
Q ss_pred CchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcC
Q 009856 431 SSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 485 (523)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~ 485 (523)
..+...+..|+..|.+ ||+.-+|.+|..+...
T Consensus 487 -------------------r~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 487 -------------------RADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred -------------------CCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 3577789999999999 9999999999888763
No 193
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.41 E-value=2.9e-11 Score=116.64 Aligned_cols=134 Identities=22% Similarity=0.269 Sum_probs=103.4
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC------------CCCCcHHHhccccceEe
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAITDRIDEVIE 402 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~------------~~~l~~al~~Rf~~~i~ 402 (523)
|+||||||++.| .-.....||..+ .++..+ ++|++||+ |..++-.|++|+ .+|.
T Consensus 289 pGVLFIDEvHML---------DIEcFsFlNrAl---E~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~ 354 (454)
T KOG2680|consen 289 PGVLFIDEVHML---------DIECFSFLNRAL---ENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIIS 354 (454)
T ss_pred cceEEEeeehhh---------hhHHHHHHHHHh---hhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heee
Confidence 457889998875 222333444443 334444 45556653 567899999999 8999
Q ss_pred ecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 009856 403 FPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482 (523)
Q Consensus 403 ~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~ 482 (523)
..+++.++...||...+..... .+++++++.|......-|.|--..|+.++...+
T Consensus 355 t~py~~~d~~~IL~iRc~EEdv-------------------------~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~ 409 (454)
T KOG2680|consen 355 TQPYTEEDIKKILRIRCQEEDV-------------------------EMNPDALDLLTKIGEATSLRYAIHLITAASLVC 409 (454)
T ss_pred cccCcHHHHHHHHHhhhhhhcc-------------------------ccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999876554 478888888888777778888888888888888
Q ss_pred HcCCCCccCHHHHHHHHHHHHHhhh
Q 009856 483 YARPDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 483 ~~~~~~~it~e~~~~~l~~~~~~~~ 507 (523)
..+....+..+|+..+..-|+.+..
T Consensus 410 ~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 410 LKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HHhcCceeehhHHHHHHHHHhhhhh
Confidence 8888899999999999999988654
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.39 E-value=3.9e-12 Score=116.63 Aligned_cols=138 Identities=25% Similarity=0.366 Sum_probs=89.8
Q ss_pred cCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-----------------------CeeEE
Q 009856 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----------------------DYAMM 306 (523)
Q Consensus 250 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-----------------------~~~~v 306 (523)
|++.+.+.|..++.. +..+..+||+||+|+||+++|.++|+.+-+ ++..+
T Consensus 1 gq~~~~~~L~~~~~~-------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC-------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHc-------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 566666666665542 344556999999999999999999998722 23333
Q ss_pred ecCCcc-cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC
Q 009856 307 TGGDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR 385 (523)
Q Consensus 307 ~~~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~ 385 (523)
...... ....+....+...+..........|++||++|.| .....+.||..++.++.+++||++|+.
T Consensus 74 ~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 222221 2233333333333322222335679999999986 245778888888889999999999999
Q ss_pred CCCCcHHHhccccceEeecCCC
Q 009856 386 PGDLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 386 ~~~l~~al~~Rf~~~i~~~~p~ 407 (523)
++.+.|.++||+ ..+.|++++
T Consensus 142 ~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTS-EEEEE----
T ss_pred hHHChHHHHhhc-eEEecCCCC
Confidence 999999999999 888887753
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.39 E-value=2e-12 Score=119.06 Aligned_cols=131 Identities=21% Similarity=0.372 Sum_probs=86.5
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--chhhHHHH-
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGAQAVTK- 321 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--~~~~~~~~- 321 (523)
+||.+..+..+.+.+..+..... +|||+|++||||+++|++|+..+ +.||+.++|+.+.. +..+.++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~------pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDL------PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-------EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCC------CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc
Confidence 57888888888887777665443 39999999999999999999987 47999999998753 11111111
Q ss_pred ----------HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-----CCC---CCCEEEEEee
Q 009856 322 ----------IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----GDQ---SRDIVLVLAT 383 (523)
Q Consensus 322 ----------l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~~---~~~v~iI~tt 383 (523)
..+.|.. ..++.||||||+.| +...+..|..+++.- +.. ..++.||++|
T Consensus 75 ~~~~~~~~~~~~G~l~~----A~~GtL~Ld~I~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 75 KGAFTGARSDKKGLLEQ----ANGGTLFLDEIEDL---------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp SSSSTTTSSEBEHHHHH----TTTSEEEEETGGGS----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred cccccccccccCCceee----ccceEEeecchhhh---------HHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 1133432 24689999999987 667888888888752 221 2389999999
Q ss_pred CCC-------CCCcHHHhccc
Q 009856 384 NRP-------GDLDSAITDRI 397 (523)
Q Consensus 384 n~~-------~~l~~al~~Rf 397 (523)
+.+ ..+.+.|..|+
T Consensus 142 ~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 142 SKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp SS-HHHHHHTTSS-HHHHHHH
T ss_pred CcCHHHHHHcCCChHHHHHHh
Confidence 863 34555565555
No 196
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.4e-12 Score=141.45 Aligned_cols=164 Identities=17% Similarity=0.193 Sum_probs=116.1
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCc-----------
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV----------- 311 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~----------- 311 (523)
+.|+|++++...|...+...+.+.....|...+||.||.|+|||-+|+++|..+ .-.++.++++.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~ 641 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPP 641 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCc
Confidence 679999999999999888777543333577889999999999999999999987 345777776641
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEee
Q 009856 312 APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLAT 383 (523)
Q Consensus 312 ~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~tt 383 (523)
.+.|.+..+.+ +.+.+.+|++||+|||||.. ++..+..|..+++... -..+|++||+|+
T Consensus 642 gyvG~e~gg~L----teavrrrP~sVVLfdeIEkA---------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 642 GYVGKEEGGQL----TEAVKRRPYSVVLFEEIEKA---------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred ccccchhHHHH----HHHHhcCCceEEEEechhhc---------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 12344444444 44448889999999999983 3333334444443321 145689999998
Q ss_pred CCC----------------------------------------CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 384 NRP----------------------------------------GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 384 n~~----------------------------------------~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
|.. ..+.|.|.+|++..+.|.+.+.++..+++...+...
T Consensus 709 n~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~ 787 (898)
T KOG1051|consen 709 NVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEI 787 (898)
T ss_pred ccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHH
Confidence 752 113466677788888888888888777777766543
No 197
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.39 E-value=2e-11 Score=133.63 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=141.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCccc-chhhH--HHHHH-HHHHH---HHhcCCceEEEEccchh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP-LGAQA--VTKIH-EIFDW---AKKSKKGLLLFIDEADA 345 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~-~~~~~--~~~l~-~~f~~---a~~~~~~~vL~iDEid~ 345 (523)
.++|||.|+||||||++|++++..++. ||+.+..+.... +.+.. ...+. +.+.+ ......+++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 568999999999999999999998754 688776432111 11110 00000 00000 00112357999999998
Q ss_pred hhhhcccccCcHHHHHHHHHHHHHh-------C---CCCCCEEEEEeeCCCC---CCcHHHhccccceEeec-CCCHHHH
Q 009856 346 FLCERNSIHMSEAQRSALNALLFRT-------G---DQSRDIVLVLATNRPG---DLDSAITDRIDEVIEFP-LPREEER 411 (523)
Q Consensus 346 l~~~~~~~~~~~~~~~~l~~ll~~~-------~---~~~~~v~iI~ttn~~~---~l~~al~~Rf~~~i~~~-~p~~~er 411 (523)
+ +...+..|..++..- + ..+.++.||+|+|..+ .+.+++++||+.+|.+. .|+.++|
T Consensus 96 l---------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 96 L---------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred C---------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 7 456666666666431 1 1234789999998765 79999999999887765 4567889
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHHHHcCCCC
Q 009856 412 FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGFS-GREIAKLMASVQAAVYARPDC 488 (523)
Q Consensus 412 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~s-grdI~~L~~~~~~a~~~~~~~ 488 (523)
.+|+..++....... .................+....++++.+..|+..+ -|.+ .|.-..++..+++.+...+..
T Consensus 167 ~eil~~~~~~~~~~~--~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~ 244 (589)
T TIGR02031 167 VEIVRRERCNEVFRM--NDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRT 244 (589)
T ss_pred HHHHHHHHHhhhhhc--chhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 999999874332100 00000000111111222222357888877776543 2443 666677888889989888999
Q ss_pred ccCHHHHHHHHHHHHHhhh
Q 009856 489 VLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 489 ~it~e~~~~~l~~~~~~~~ 507 (523)
.++.+|+..++..+++...
T Consensus 245 ~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 245 EVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred CCCHHHHHHHHHHHhhhhc
Confidence 9999999999999998554
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.38 E-value=5.5e-13 Score=123.16 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCC----CeeEEecCCcccchhhHHHHHHHHHHHH---HhcCCceEEEEccchhh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGL----DYAMMTGGDVAPLGAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAF 346 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~----~~~~v~~~~~~~~~~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l 346 (523)
|..++||+||+|||||.+|+++|..+.. +++.++++.+.. +.+....+..++..+ .....++||||||||+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 5567999999999999999999999985 899999988766 111111111111110 11122459999999998
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhC-----------CCCCCEEEEEeeCCC
Q 009856 347 LCERNSIHMSEAQRSALNALLFRTG-----------DQSRDIVLVLATNRP 386 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~ll~~~~-----------~~~~~v~iI~ttn~~ 386 (523)
.+. .+...+.....+.+.||+.++ -+..+++||+|+|..
T Consensus 81 ~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 664 222222222344444444432 134589999999964
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=2.8e-11 Score=123.45 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=97.5
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCC------------------------eeEEecCCc-ccchhhHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------------YAMMTGGDV-APLGAQAVTKIHEIF 326 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~------------------------~~~v~~~~~-~~~~~~~~~~l~~~f 326 (523)
+..+..+||+||+|+||+++|.++|..+-+. +..+....- ..++.+....+...+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 3445679999999999999999999988321 222211100 113333444444433
Q ss_pred HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCC
Q 009856 327 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 327 ~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p 406 (523)
..........|+|||++|.| ....-|.||+.+++++.+++||++|+.++.+.|.++||| ..+.|++|
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~~~~ 167 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALL------------TDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC-RLHYLAPP 167 (334)
T ss_pred hhccccCCceEEEEcchHhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-ccccCCCC
Confidence 33333345679999999996 346788999999999999999999999999999999999 68899999
Q ss_pred CHHHHHHHHHH
Q 009856 407 REEERFKLLKL 417 (523)
Q Consensus 407 ~~~er~~il~~ 417 (523)
+.++....+..
T Consensus 168 ~~~~~~~~L~~ 178 (334)
T PRK07993 168 PEQYALTWLSR 178 (334)
T ss_pred CHHHHHHHHHH
Confidence 99888776653
No 200
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=4e-11 Score=121.28 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=97.9
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCC------------------------eeEEecCCcccchhhHHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------------YAMMTGGDVAPLGAQAVTKIHEIFD 327 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~~f~ 327 (523)
+..+..+||+||+|+||+++|+++|+.+-+. +..+...+-...+.+....+...+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 3444579999999999999999999987331 2222111101123333333333333
Q ss_pred HHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCC
Q 009856 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 328 ~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~ 407 (523)
......+..|++||++|.| ....-|.||+.+++++.+++||++|+.++.+.|.++||| ..+.|++|+
T Consensus 101 ~~~~~g~~KV~iI~~a~~m------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~ 167 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERL------------TEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPE 167 (325)
T ss_pred hccccCCceEEEEechhhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCC
Confidence 3223345679999999996 245788899999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHH
Q 009856 408 EEERFKLLKLY 418 (523)
Q Consensus 408 ~~er~~il~~~ 418 (523)
.++....+...
T Consensus 168 ~~~~~~~L~~~ 178 (325)
T PRK06871 168 EQQALDWLQAQ 178 (325)
T ss_pred HHHHHHHHHHH
Confidence 99888777654
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=4.7e-11 Score=120.60 Aligned_cols=132 Identities=26% Similarity=0.320 Sum_probs=94.6
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCC---------------------eeEEe--cCCccc--chhhHHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLD---------------------YAMMT--GGDVAP--LGAQAVTKIHEIFD 327 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~---------------------~~~v~--~~~~~~--~~~~~~~~l~~~f~ 327 (523)
.-+..+||+||+|+||+++|.++|+.+-+. +..+. ...-.. ...-....++.+..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 334569999999999999999999887331 11121 000000 00012334455544
Q ss_pred HHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeec
Q 009856 328 WAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFP 404 (523)
Q Consensus 328 ~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~ 404 (523)
.+.. ..+..|++||++|.| .....|.+|+.+++++.+++||++|+.++.+.|.++||| ..+.|+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~ 170 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI------------NRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFK 170 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh------------CHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCC
Confidence 4432 234579999999996 245788888889999999999999999999999999999 899999
Q ss_pred CCCHHHHHHHHHH
Q 009856 405 LPREEERFKLLKL 417 (523)
Q Consensus 405 ~p~~~er~~il~~ 417 (523)
+|+.++....+..
T Consensus 171 ~~~~~~~~~~L~~ 183 (319)
T PRK08769 171 LPPAHEALAWLLA 183 (319)
T ss_pred CcCHHHHHHHHHH
Confidence 9999887776653
No 202
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.34 E-value=9.2e-12 Score=121.52 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=136.2
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC--e----eEEecCCccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD--Y----AMMTGGDVAP 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~--~----~~v~~~~~~~ 313 (523)
..+..+.++++++++...+..+.. .+..+|.|+|||||||||+...+.|..+-.| + ..++.++-
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~--------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-- 104 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSG--------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-- 104 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhcc--------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc--
Confidence 345566889999988888776621 2222389999999999999999999988553 2 12233332
Q ss_pred chhhHHHHHHHHHHHHHh------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 314 LGAQAVTKIHEIFDWAKK------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
.+.+........|..... .....++++||+|++. ...+..|.. ..+....++.|+..+|++.
T Consensus 105 rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT---------~~AQnALRR---viek~t~n~rF~ii~n~~~ 172 (360)
T KOG0990|consen 105 RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT---------RDAQNALRR---VIEKYTANTRFATISNPPQ 172 (360)
T ss_pred cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh---------HHHHHHHHH---HHHHhccceEEEEeccChh
Confidence 222333344444444332 2246789999999963 244555554 4555678889999999999
Q ss_pred CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 388 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 388 ~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
.+.|++.+|| ..+.|.+.+.......+.+.+..... ..+++....++..+.|
T Consensus 173 ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~-------------------------~~~~~~~~a~~r~s~g-- 224 (360)
T KOG0990|consen 173 KIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK-------------------------ETNPEGYSALGRLSVG-- 224 (360)
T ss_pred hcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh-------------------------hcCHHHHHHHHHHhHH--
Confidence 9999999999 78899999988888888888765433 3566667777777766
Q ss_pred HHHHHHHHHHHHHHHHc
Q 009856 468 GREIAKLMASVQAAVYA 484 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~ 484 (523)
|++..++.++..+..
T Consensus 225 --Dmr~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 225 --DMRVALNYLQSILKK 239 (360)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 999998877776643
No 203
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.34 E-value=2.3e-11 Score=133.33 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=91.0
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C-------------CCCCEEEEEeeCCC--CCCcHHHh
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D-------------QSRDIVLVLATNRP--GDLDSAIT 394 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~-------------~~~~v~iI~ttn~~--~~l~~al~ 394 (523)
+++|||||++.| +...+..|..+++.-. . -+-++.+|+++|.. ..++|.|+
T Consensus 218 gGtL~Ldei~~L---------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~ 288 (608)
T TIGR00764 218 KGVLYIDEIKTM---------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALR 288 (608)
T ss_pred CCEEEEEChHhC---------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHH
Confidence 357888999876 4456666666664311 0 12378899999864 57999999
Q ss_pred cccc---ceEeecC--C-CHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCC----
Q 009856 395 DRID---EVIEFPL--P-REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE---- 464 (523)
Q Consensus 395 ~Rf~---~~i~~~~--p-~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~---- 464 (523)
+||+ ..+.|+. | +.+.+..+++.+...... .. ....++++.+..|.....
T Consensus 289 ~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r-~G-------------------~l~~~s~~Av~~Li~~~~R~ag 348 (608)
T TIGR00764 289 SRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKK-DG-------------------RIPHFTRDAVEEIVREAQRRAG 348 (608)
T ss_pred HHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHH-hC-------------------CCCcCCHHHHHHHHHHHHHHHh
Confidence 9998 5566643 3 455555554443332211 00 011477877777754211
Q ss_pred -----CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 465 -----GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 465 -----G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
..+.|+|..++..+...+.......|+.+|+.++++....
T Consensus 349 ~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 349 RKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 1356899999987766665666679999999999887754
No 204
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=4.1e-11 Score=128.06 Aligned_cols=226 Identities=22% Similarity=0.282 Sum_probs=134.8
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC----------------------
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---------------------- 300 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~---------------------- 300 (523)
.+|.+++|+..+++.+...+ ....+++|+||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 37899999999877665432 1224699999999999999999987541
Q ss_pred ------CCeeEEecCCcc--cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-
Q 009856 301 ------LDYAMMTGGDVA--PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG- 371 (523)
Q Consensus 301 ------~~~~~v~~~~~~--~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~- 371 (523)
.||....++... -+++... .-.+.+ ....+++|||||++.| +...+..|...+..-.
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~-~~pG~i----~lA~~GvLfLDEi~e~---------~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPI-PLPGEI----SLAHNGVLFLDELPEF---------KRSVLDALREPIEDGSI 324 (499)
T ss_pred ccccccCCccccccccchhhhhCCccc-cchhhh----hccCCCeEecCChhhC---------CHHHHHHHHHHHHcCcE
Confidence 122211111100 0111000 001112 2234679999999986 4456666666664311
Q ss_pred ---------CCCCCEEEEEeeCCC------C-----------------CCcHHHhccccceEeecCCCHHHHH-------
Q 009856 372 ---------DQSRDIVLVLATNRP------G-----------------DLDSAITDRIDEVIEFPLPREEERF------- 412 (523)
Q Consensus 372 ---------~~~~~v~iI~ttn~~------~-----------------~l~~al~~Rf~~~i~~~~p~~~er~------- 412 (523)
..+.++.+|+++|.. + .+...|++|||.++.++.++..+..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~ 404 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGES 404 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCC
Confidence 123578999999863 1 4889999999999999988765431
Q ss_pred ------HHHHHHH---HhhccCCC--CCCCchhhhhhhhhhhhhhhhccCCHHHHHHH---HHHCCCCCHHHHHHHHHHH
Q 009856 413 ------KLLKLYL---KKYLCSDE--GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA---ARKTEGFSGREIAKLMASV 478 (523)
Q Consensus 413 ------~il~~~l---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---a~~t~G~sgrdI~~L~~~~ 478 (523)
.+....- .++.. .. .....+. . ..-.....++++....+ ... -++|.|....++..+
T Consensus 405 s~~ir~rV~~Ar~~q~~R~~~-~~~~~~N~~l~-----~--~~l~~~~~l~~~~~~~l~~a~~~-~~lS~R~~~rilrvA 475 (499)
T TIGR00368 405 SAEVKQRVIKAREIQNIRYEK-FANINKNADLN-----S--DEIEQFCKLSAIDANDLEGALNK-LGLSSRATHRILKVA 475 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCcccccCC-----H--HHHHhhcCCCHHHHHHHHHHHHh-cCCCchHHHHHHHHH
Confidence 1211111 11100 00 0000000 0 00001123455544333 333 468999999999999
Q ss_pred HHHHHcCCCCccCHHHHHHHHHH
Q 009856 479 QAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 479 ~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
...+-..+...++.+|+.+++..
T Consensus 476 rTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 476 RTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHhhcCCCCCCHHHHHHHHhc
Confidence 99999889999999999999863
No 205
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1e-10 Score=114.86 Aligned_cols=152 Identities=22% Similarity=0.364 Sum_probs=88.7
Q ss_pred eEEEEccchhhhhhcccccCc---HHHHHHHHHHHHHh------C-CCCCCEEEEEee----CCCCCCcHHHhccccceE
Q 009856 336 LLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRT------G-DQSRDIVLVLAT----NRPGDLDSAITDRIDEVI 401 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~---~~~~~~l~~ll~~~------~-~~~~~v~iI~tt----n~~~~l~~al~~Rf~~~i 401 (523)
+|+||||||+++.+...++.. ...++-|..++... + -....++||++. ..|++|-|.|..||+..+
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRV 331 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 331 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEE
Confidence 489999999998776533211 22333333333221 1 123456777765 468899999999999999
Q ss_pred eecCCCHHHHHHHHHH----HHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH-------CCCCCHHH
Q 009856 402 EFPLPREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK-------TEGFSGRE 470 (523)
Q Consensus 402 ~~~~p~~~er~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~-------t~G~sgrd 470 (523)
++...+.++...||.. .+++|.. ++.. .++.+ .|+++.+..||.. ++..-.|-
T Consensus 332 EL~~Lt~~Df~rILtep~~sLikQY~a-------------LlkT--E~v~l-~FtddaI~~iAeiA~~vN~~~ENIGARR 395 (444)
T COG1220 332 ELDALTKEDFERILTEPKASLIKQYKA-------------LLKT--EGVEL-EFTDDAIKRIAEIAYQVNEKTENIGARR 395 (444)
T ss_pred EcccCCHHHHHHHHcCcchHHHHHHHH-------------HHhh--cCeeE-EecHHHHHHHHHHHHHhcccccchhHHH
Confidence 9999999999887642 2222211 1111 11111 5889998888765 33333444
Q ss_pred HHHHHH-HHHHHHHcCCC-----CccCHHHHHHHHHHHH
Q 009856 471 IAKLMA-SVQAAVYARPD-----CVLDSQLFREVVEYKV 503 (523)
Q Consensus 471 I~~L~~-~~~~a~~~~~~-----~~it~e~~~~~l~~~~ 503 (523)
+.-.+. .+.-..+...+ -.|+.+.+++-+....
T Consensus 396 LhTvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~ 434 (444)
T COG1220 396 LHTVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLV 434 (444)
T ss_pred HHHHHHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHHh
Confidence 444332 22222232222 2678888877776543
No 206
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.6e-11 Score=116.38 Aligned_cols=218 Identities=16% Similarity=0.284 Sum_probs=133.2
Q ss_pred CCcccCHHHHHHHHHHHH----HHhcchhcC---CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---ch
Q 009856 246 GDIILHPSLQRRIQHLAK----ATANTKIHQ---APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~----~~~~~~~~~---~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~ 315 (523)
+-+||++.+++.+.-.+. .+.+..... -.-.|+||.||+|||||+||+.||+.++.||..-++..+.. +|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 458899988887653321 111111100 12247999999999999999999999999999988877654 34
Q ss_pred hhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhccccc-----CcHHHHHHHHHHHHHhC----------------
Q 009856 316 AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIH-----MSEAQRSALNALLFRTG---------------- 371 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~-----~~~~~~~~l~~ll~~~~---------------- 371 (523)
.+...-+..++..+. .....+|++|||||++..+..+.+ ..+..+..|..++...-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 344444455544321 112346999999999987764322 23455566665554321
Q ss_pred --CCCCCEEEEEeeCCC---------------------------------------C-----CCcHHHhccccceEeecC
Q 009856 372 --DQSRDIVLVLATNRP---------------------------------------G-----DLDSAITDRIDEVIEFPL 405 (523)
Q Consensus 372 --~~~~~v~iI~ttn~~---------------------------------------~-----~l~~al~~Rf~~~i~~~~ 405 (523)
-+..|+.||+..-.. + .|-|.|..|++.+..+..
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~ 300 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhh
Confidence 023456666543210 0 245889999999999999
Q ss_pred CCHHHHHHHHHH----HHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHH--CCCCCHHHHHHHHHHHH
Q 009856 406 PREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMASVQ 479 (523)
Q Consensus 406 p~~~er~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~~~~ 479 (523)
.+.+....||.. ..++|. .+|.-..-.+ .++++++..||.. ..+--.|-++.++..+.
T Consensus 301 Lde~aLv~ILtePkNAlvKQYq-------------~Lf~~d~V~L---~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~l 364 (408)
T COG1219 301 LDEDALVQILTEPKNALVKQYQ-------------KLFEMDGVEL---EFTEEALKAIAKKAIERKTGARGLRSIIEELL 364 (408)
T ss_pred cCHHHHHHHHhcccHHHHHHHH-------------HHhcccCceE---EEcHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 999998887642 111111 1111111111 4889999999865 23444577888885333
No 207
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.30 E-value=1.1e-12 Score=122.76 Aligned_cols=145 Identities=26% Similarity=0.299 Sum_probs=62.3
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------eeEEec-----
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------YAMMTG----- 308 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------~~~v~~----- 308 (523)
+|.+|+|++.++.++.-.+. + ..|+||+||||||||++|+.+...+..- ++.+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------G--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~ 70 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------G--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDE 70 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------C--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------C--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCC
Confidence 47899999999999875543 1 2479999999999999999999876210 000000
Q ss_pred -----CCcccchhhHHHHHHHHHHHH-------HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----
Q 009856 309 -----GDVAPLGAQAVTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----- 371 (523)
Q Consensus 309 -----~~~~~~~~~~~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----- 371 (523)
..+... ..+ .....++... ......+||||||+-.| +....+.|...+..-.
T Consensus 71 ~~~~~~Pfr~p-hhs-~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef---------~~~vld~Lr~ple~g~v~i~R 139 (206)
T PF01078_consen 71 GLIRQRPFRAP-HHS-ASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF---------DRSVLDALRQPLEDGEVTISR 139 (206)
T ss_dssp EEEE---EEEE--TT---HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS----------HHHHHHHHHHHHHSBEEEEE
T ss_pred ceecCCCcccC-CCC-cCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc---------CHHHHHHHHHHHHCCeEEEEE
Confidence 000000 000 0011111110 01223579999999765 2233333443333210
Q ss_pred -----CCCCCEEEEEeeCCC-----------------------CCCcHHHhccccceEeecCCCHH
Q 009856 372 -----DQSRDIVLVLATNRP-----------------------GDLDSAITDRIDEVIEFPLPREE 409 (523)
Q Consensus 372 -----~~~~~v~iI~ttn~~-----------------------~~l~~al~~Rf~~~i~~~~p~~~ 409 (523)
..+.++.+|+|+|.- ..+...|++|||..+.++..+.+
T Consensus 140 ~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 140 AGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp TTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred CCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 134588999999852 24778899999999998877654
No 208
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=3.4e-11 Score=122.59 Aligned_cols=132 Identities=19% Similarity=0.220 Sum_probs=95.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCCe-------------------------eEEecCCcc---------------
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDY-------------------------AMMTGGDVA--------------- 312 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~~-------------------------~~v~~~~~~--------------- 312 (523)
..++.+||+||+|+||+++|+.+|..+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4456799999999999999999999884421 111100000
Q ss_pred -cc--------hhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEE
Q 009856 313 -PL--------GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLV 380 (523)
Q Consensus 313 -~~--------~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI 380 (523)
.. ..-....++.+...+.. ..+..|+|||++|.|. ...-|.||+.+++++.+++||
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fi 166 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEPPPGTVFL 166 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCcCcEEE
Confidence 00 00122344444443322 2345799999999962 457888999999999999999
Q ss_pred EeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHH
Q 009856 381 LATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKL 417 (523)
Q Consensus 381 ~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~ 417 (523)
++|+.++.+.|.++||| ..+.|++|+.++....+..
T Consensus 167 L~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 167 LVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 99999999999999999 8999999999988887765
No 209
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.2e-11 Score=119.18 Aligned_cols=197 Identities=19% Similarity=0.335 Sum_probs=124.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~ 350 (523)
+|||.||+|+|||+||+.||+.++.||+..+|..+.. +|.+...-+..++..|.- ....+|+||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999988753 454555556666655421 1224699999999998544
Q ss_pred cccc-----CcHHHHHHHHHHHHHhC-----C-------------CCCCEEEEEeeCCC---------------------
Q 009856 351 NSIH-----MSEAQRSALNALLFRTG-----D-------------QSRDIVLVLATNRP--------------------- 386 (523)
Q Consensus 351 ~~~~-----~~~~~~~~l~~ll~~~~-----~-------------~~~~v~iI~ttn~~--------------------- 386 (523)
.+.+ ..+..+..|..++...- . +..+++||+..-..
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred ccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 3321 22455666666654310 0 23356666543110
Q ss_pred -----------C------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCC
Q 009856 387 -----------G------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSS 431 (523)
Q Consensus 387 -----------~------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~ 431 (523)
+ .+-|.|..||+..+.|...+.+.+..+|..=-. .-
T Consensus 388 ~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkn---------aL 458 (564)
T KOG0745|consen 388 SKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKN---------AL 458 (564)
T ss_pred CccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchh---------hH
Confidence 0 145899999999999999999988887642100 00
Q ss_pred chhhhhhhhhhhhhhhhccCCHHHHHHHHHH--CCCCCHHHHHHHHHHH-HHHHHcC
Q 009856 432 SLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMASV-QAAVYAR 485 (523)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~~~-~~a~~~~ 485 (523)
...|..+|....-.+ .+++.++..||+. ..+--.|-|+.++..+ ..+.|..
T Consensus 459 ~~Qyk~lf~~~nV~L---~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 459 GKQYKKLFGMDNVEL---HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred HHHHHHHhccCCeeE---EecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 111111221111111 4889999999875 3444567888888543 3444443
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=1.4e-12 Score=116.38 Aligned_cols=111 Identities=25% Similarity=0.403 Sum_probs=70.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHH---HHHHHH-----HHhcCCceEEEEccchhhhh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKI---HEIFDW-----AKKSKKGLLLFIDEADAFLC 348 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l---~~~f~~-----a~~~~~~~vL~iDEid~l~~ 348 (523)
+|||+||||||||++|+.+|..++.++..++++...... +..+.. ...+.+ ......++++||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~-dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEE-DLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHH-HHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccc-cceeeeeecccccccccccccccccceeEEEECCcccC--
Confidence 489999999999999999999999999999887643211 000000 000000 000114789999999985
Q ss_pred hcccccCcHHHHHHHHHHHHHhC----C------CCC------CEEEEEeeCCCC----CCcHHHhccc
Q 009856 349 ERNSIHMSEAQRSALNALLFRTG----D------QSR------DIVLVLATNRPG----DLDSAITDRI 397 (523)
Q Consensus 349 ~~~~~~~~~~~~~~l~~ll~~~~----~------~~~------~v~iI~ttn~~~----~l~~al~~Rf 397 (523)
++.....|+.+++.-. . ... ++.||+|+|..+ .++++|++||
T Consensus 78 -------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 -------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 3345555555554310 0 111 489999999988 8999999998
No 211
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.28 E-value=1.2e-10 Score=124.16 Aligned_cols=220 Identities=18% Similarity=0.221 Sum_probs=153.4
Q ss_pred ccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCcccch---
Q 009856 249 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVAPLG--- 315 (523)
Q Consensus 249 ig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~~~~~--- 315 (523)
-..+.-...|..++..+...+ .....++|+|-||||||.+++.+-..+ ..+|+.+||-.+.+..
T Consensus 399 pcRe~E~~~I~~f~~~~i~~~---~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 399 PCRENEFSEIEDFLRSFISDQ---GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred cchhHHHHHHHHHHHhhcCCC---CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 333444444555444433331 122369999999999999999998876 3568888887665411
Q ss_pred --------h------hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEE
Q 009856 316 --------A------QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL 381 (523)
Q Consensus 316 --------~------~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ 381 (523)
+ .....+..-|......++++||+|||.|.|.. ..+.++..|+++......+++||+
T Consensus 476 ~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------r~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 476 EKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVT---------RSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc---------ccHHHHHHHhcCCcCCCCceEEEE
Confidence 0 11223344444333445679999999999864 347889999988877777888888
Q ss_pred eeCCCCC----CcHHHhcccc-ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHH
Q 009856 382 ATNRPGD----LDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 456 (523)
Q Consensus 382 ttn~~~~----l~~al~~Rf~-~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (523)
.+|..+. |...+-+|++ ..|.|.+++..+...|+...|..... +....+
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~--------------------------f~~~ai 600 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA--------------------------FENKAI 600 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh--------------------------cchhHH
Confidence 8876542 3334445765 57899999999999999999876532 667778
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHcCCC----------CccCHHHHHHHHHHHHHhhh
Q 009856 457 QEAARKTEGFSGREIAKLMASVQAAVYARPD----------CVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 457 ~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~----------~~it~e~~~~~l~~~~~~~~ 507 (523)
+.+|.+....|| |.+...+.+++|+-.+.. ..++..++..|+...+.++.
T Consensus 601 elvarkVAavSG-DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 601 ELVARKVAAVSG-DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 888887766777 888888777777644322 24789999999999887653
No 212
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1e-10 Score=117.94 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=97.0
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCC-----------------------CeeEEecCCc-ccchhhHHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGL-----------------------DYAMMTGGDV-APLGAQAVTKIHEIFD 327 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~-----------------------~~~~v~~~~~-~~~~~~~~~~l~~~f~ 327 (523)
+..+..+||+||.|+||+++|.++|+.+-+ ++..+....- ..++.+....+...+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 444567999999999999999999998732 1222221110 1123333333333332
Q ss_pred HHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCC
Q 009856 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 328 ~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~ 407 (523)
......+..|++||++|.+ ....-|.||+.+++++.+++||++|+.++.+.|.++||| ..+.|++|+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~ 168 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAM------------NESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPS 168 (319)
T ss_pred hCcccCCceEEEecchhhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCC
Confidence 2222344679999999996 246788899999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHH
Q 009856 408 EEERFKLLKL 417 (523)
Q Consensus 408 ~~er~~il~~ 417 (523)
.++....+..
T Consensus 169 ~~~~~~~L~~ 178 (319)
T PRK06090 169 TAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 213
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.5e-11 Score=126.65 Aligned_cols=229 Identities=21% Similarity=0.239 Sum_probs=131.1
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC---------------------
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--------------------- 300 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~--------------------- 300 (523)
..+|.||+|++.++..+.-.+. ..+|+||+||||||||++|+.+..-+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA----------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA----------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh----------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 4589999999999999875433 234699999999999999999876541
Q ss_pred --CCeeEEecCCcccchhhHHHHHHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 301 --LDYAMMTGGDVAPLGAQAVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 301 --~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
.+++.. .+...+ . .+ .....+...-. ....++||||||+-.+ .+.+|+.|.+-++
T Consensus 245 ~~~~~~~~-rPFr~P-H-Hs-aS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef------------~~~iLe~LR~PLE 308 (490)
T COG0606 245 EGCPLKIH-RPFRAP-H-HS-ASLAALVGGGGVPRPGEISLAHNGVLFLDELPEF------------KRSILEALREPLE 308 (490)
T ss_pred ccCcccee-CCccCC-C-cc-chHHHHhCCCCCCCCCceeeecCCEEEeeccchh------------hHHHHHHHhCccc
Confidence 111100 000000 0 00 00000100000 1113579999999653 4567777776554
Q ss_pred C-------------CCCCEEEEEeeCCC-----------------------CCCcHHHhccccceEeecCCCHHHHH---
Q 009856 372 D-------------QSRDIVLVLATNRP-----------------------GDLDSAITDRIDEVIEFPLPREEERF--- 412 (523)
Q Consensus 372 ~-------------~~~~v~iI~ttn~~-----------------------~~l~~al~~Rf~~~i~~~~p~~~er~--- 412 (523)
+ .+.+|.+|+++|.. ..+...|++|||..+.++.++..++.
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~ 388 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQV 388 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCC
Confidence 2 23467788888863 14668899999999999988754442
Q ss_pred -----------HHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHH--HHHHCCCCCHHHHHHHHHHHH
Q 009856 413 -----------KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE--AARKTEGFSGREIAKLMASVQ 479 (523)
Q Consensus 413 -----------~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--la~~t~G~sgrdI~~L~~~~~ 479 (523)
.++..+-.+....... ..+.. +... .--....++.+..+. .+-..-|+|.|....++....
T Consensus 389 ~~~ess~~v~~rVa~AR~~Q~~R~~~~-~~Na~---l~~~--~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvar 462 (490)
T COG0606 389 PTGESSAGVRERVAKAREAQIARAGRI-GINAE---LSEE--ALRKFCALQREDADLLKAALERLGLSARAYHRILKVAR 462 (490)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhcc-Ccchh---cCHH--HHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 1222221111100000 00000 0000 000112233332222 233344789999999998888
Q ss_pred HHHHcCCCCccCHHHHHHHHHHH
Q 009856 480 AAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 480 ~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
..+-..+...|...++.+++...
T Consensus 463 TiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 463 TIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred hhhcccCcchhhHHHHHHHHhhh
Confidence 87877778899999999998765
No 214
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.24 E-value=2.9e-10 Score=126.60 Aligned_cols=219 Identities=18% Similarity=0.177 Sum_probs=127.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHH----HHH---HHHHhcCCceEEEEccchhhhhh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIH----EIF---DWAKKSKKGLLLFIDEADAFLCE 349 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~----~~f---~~a~~~~~~~vL~iDEid~l~~~ 349 (523)
+|||+|+||||||.+|+++++...... +.++......+........ +.+ ..+.....+++++|||++.+
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm--- 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC--- 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC---
Confidence 799999999999999999998653221 1122111111100000000 000 00112234579999999986
Q ss_pred cccccCcHHHHHHHHHHHHHh-------C---CCCCCEEEEEeeCCCC-------------CCcHHHhccccceE-eecC
Q 009856 350 RNSIHMSEAQRSALNALLFRT-------G---DQSRDIVLVLATNRPG-------------DLDSAITDRIDEVI-EFPL 405 (523)
Q Consensus 350 ~~~~~~~~~~~~~l~~ll~~~-------~---~~~~~v~iI~ttn~~~-------------~l~~al~~Rf~~~i-~~~~ 405 (523)
+...+..|..++..- + .-..++.||+|+|+.. .|++++++|||.++ .++.
T Consensus 570 ------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~ 643 (915)
T PTZ00111 570 ------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDH 643 (915)
T ss_pred ------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCC
Confidence 556677777766431 1 1235789999999752 47899999998765 4577
Q ss_pred CCHHHHHHHHHHHHHhhccCC---CCC------------------CCc-----hhhhhhhhhhhhhh-h-hccCCHHHHH
Q 009856 406 PREEERFKLLKLYLKKYLCSD---EGD------------------SSS-----LKWGHLFKKQQQKI-T-IKDLSDNVIQ 457 (523)
Q Consensus 406 p~~~er~~il~~~l~~~~~~~---~~~------------------~~~-----~~~~~~~~~~~~~~-~-~~~~~~~~l~ 457 (523)
|+.+.=..|..+.+..+.... ... ... .....+..-..+.. . .+.+++++.+
T Consensus 644 ~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~ 723 (915)
T PTZ00111 644 IDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKK 723 (915)
T ss_pred CChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 776655566666554321100 000 000 00000000011111 1 1346776665
Q ss_pred HHHH-----HC--------------------------C-----CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 458 EAAR-----KT--------------------------E-----GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 458 ~la~-----~t--------------------------~-----G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
.|.. +. . -.+.|.|..|+..+++.|...-...++.+|+..|+.-
T Consensus 724 ~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L 803 (915)
T PTZ00111 724 VITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQI 803 (915)
T ss_pred HHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHH
Confidence 5533 11 1 1568999999999999999888899999999999998
Q ss_pred HHHh
Q 009856 502 KVEE 505 (523)
Q Consensus 502 ~~~~ 505 (523)
+...
T Consensus 804 ~~~s 807 (915)
T PTZ00111 804 VKSS 807 (915)
T ss_pred HHHH
Confidence 7543
No 215
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.2e-10 Score=122.65 Aligned_cols=205 Identities=27% Similarity=0.426 Sum_probs=157.3
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc-cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhc
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~ 350 (523)
..|+.+++++||||||||+++++++.. +..+..++++.+. .+.+.....+...|..+....+ +++++|+++.+.+.+
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~ii~~d~~~~~~~~~ 92 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAP-SIIFIDEIDALAPKR 92 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCC-CeEeechhhhcccCc
Confidence 467789999999999999999999999 6666666666554 3667788889999999987774 899999999999988
Q ss_pred ccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEeeCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCC
Q 009856 351 NSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDE 427 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~~~~-~~~v~iI~ttn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~ 427 (523)
.. ........++..++..++.. ...++++..+|.+..+++++.+ ||+..+.++.|+...+..|+.........
T Consensus 93 ~~-~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~--- 168 (494)
T COG0464 93 SS-DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFL--- 168 (494)
T ss_pred cc-cccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCC---
Confidence 77 33334445555555443311 2337777889999999999987 99999999999999998888877665443
Q ss_pred CCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHc-----CCCCccCHHHHHHHHHH
Q 009856 428 GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQ-AAVYA-----RPDCVLDSQLFREVVEY 501 (523)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~-~a~~~-----~~~~~it~e~~~~~l~~ 501 (523)
..+..+..++..+.|++++++..++.... .+... .....++.+++..+++.
T Consensus 169 -----------------------~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~ 225 (494)
T COG0464 169 -----------------------GPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKK 225 (494)
T ss_pred -----------------------cccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHh
Confidence 12456889999999999999999995333 33322 22446889999999999
Q ss_pred HHHh
Q 009856 502 KVEE 505 (523)
Q Consensus 502 ~~~~ 505 (523)
..+.
T Consensus 226 ~~~~ 229 (494)
T COG0464 226 VLPS 229 (494)
T ss_pred cCcc
Confidence 8774
No 216
>PRK08116 hypothetical protein; Validated
Probab=99.22 E-value=1.3e-10 Score=115.29 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=94.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
....+|++++..+.....+..+...+.+.........+++|+|+||||||+||.++++.+ +.++++++.+++.....
T Consensus 79 ~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 79 FRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred HHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 345678888765555444444333333322222233469999999999999999999986 67888877655432111
Q ss_pred hHH-----HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC----
Q 009856 317 QAV-----TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 387 (523)
Q Consensus 317 ~~~-----~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---- 387 (523)
... .....++. ......+|+|||++.. ..+...+..|..++..... .+..+|+|||.+.
T Consensus 159 ~~~~~~~~~~~~~~~~---~l~~~dlLviDDlg~e-------~~t~~~~~~l~~iin~r~~--~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 159 STYKSSGKEDENEIIR---SLVNADLLILDDLGAE-------RDTEWAREKVYNIIDSRYR--KGLPTIVTTNLSLEELK 226 (268)
T ss_pred HHHhccccccHHHHHH---HhcCCCEEEEecccCC-------CCCHHHHHHHHHHHHHHHH--CCCCEEEECCCCHHHHH
Confidence 000 01112222 2233569999999642 1234455556556554321 2235888888752
Q ss_pred -CCcHHHhccc---cceEeecCCCHHHHHHHHHH
Q 009856 388 -DLDSAITDRI---DEVIEFPLPREEERFKLLKL 417 (523)
Q Consensus 388 -~l~~al~~Rf---~~~i~~~~p~~~er~~il~~ 417 (523)
.++..+.+|+ ...|.|+.|+. |..+.+.
T Consensus 227 ~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 227 NQYGKRIYDRILEMCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred HHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHHH
Confidence 2567888884 34567766664 4444433
No 217
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.21 E-value=7.6e-11 Score=125.05 Aligned_cols=205 Identities=23% Similarity=0.278 Sum_probs=144.5
Q ss_pred cCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh--CCCeeEEecCCccc--chhhHHHHHHHH
Q 009856 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS--GLDYAMMTGGDVAP--LGAQAVTKIHEI 325 (523)
Q Consensus 250 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l--~~~~~~v~~~~~~~--~~~~~~~~l~~~ 325 (523)
+.+.....+...+..+.....+ +|+.|.|||||-.++++++..+ ..||+.+||..+.. ++.+.++++...
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~p------vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Ga 390 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLP------VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGA 390 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCC------eEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccc
Confidence 4444444444444444444333 9999999999999999999887 46899999999876 677778888888
Q ss_pred HHHHHhcC--------CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-----CC--CCCCEEEEEeeCCC----
Q 009856 326 FDWAKKSK--------KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----GD--QSRDIVLVLATNRP---- 386 (523)
Q Consensus 326 f~~a~~~~--------~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~--~~~~v~iI~ttn~~---- 386 (523)
|+.+.... .++.||+|||..+ +...+..|..+|+.- +. ..-+|.||+||+.+
T Consensus 391 fTga~~kG~~g~~~~A~gGtlFldeIgd~---------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~l 461 (606)
T COG3284 391 FTGARRKGYKGKLEQADGGTLFLDEIGDM---------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQL 461 (606)
T ss_pred cccchhccccccceecCCCccHHHHhhhc---------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHH
Confidence 87654332 4567999999765 667788888888762 21 22378899999873
Q ss_pred ---CCCcHHHhccccceEeecCCCHHHHHH---HHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHH-
Q 009856 387 ---GDLDSAITDRIDEVIEFPLPREEERFK---LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA- 459 (523)
Q Consensus 387 ---~~l~~al~~Rf~~~i~~~~p~~~er~~---il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l- 459 (523)
..+...|.-|+ ..+.|..|+..+|.+ ++.+++.+... . .-.++++.+..|
T Consensus 462 v~~g~fredLyyrL-~~~~i~lP~lr~R~d~~~~l~~~~~~~~~----~------------------~~~l~~~~~~~l~ 518 (606)
T COG3284 462 VEQGRFREDLYYRL-NAFVITLPPLRERSDRIPLLDRILKREND----W------------------RLQLDDDALARLL 518 (606)
T ss_pred HHcCCchHHHHHHh-cCeeeccCchhcccccHHHHHHHHHHccC----C------------------CccCCHHHHHHHH
Confidence 34555666666 567777788777765 66666665432 0 014788888887
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 009856 460 ARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFR 496 (523)
Q Consensus 460 a~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~ 496 (523)
+..|+| +|++|.+.+..++..++++.+...|+.
T Consensus 519 ~~~WPG----Nirel~~v~~~~~~l~~~g~~~~~dlp 551 (606)
T COG3284 519 AYRWPG----NIRELDNVIERLAALSDGGRIRVSDLP 551 (606)
T ss_pred hCCCCC----cHHHHHHHHHHHHHcCCCCeeEcccCC
Confidence 556666 999999999999999888766544433
No 218
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.21 E-value=3.5e-10 Score=120.53 Aligned_cols=230 Identities=22% Similarity=0.217 Sum_probs=134.5
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------eeEEecC---
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------YAMMTGG--- 309 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------~~~v~~~--- 309 (523)
.+|.+++|+..++..+... ..+..+++|+||||||||++++.++..+... ++.+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la----------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT----------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred cCeEEEECcHHHHhhhhee----------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 4788889987766664322 1233579999999999999999998765210 0111010
Q ss_pred -------Ccc-c---------chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-
Q 009856 310 -------DVA-P---------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG- 371 (523)
Q Consensus 310 -------~~~-~---------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~- 371 (523)
.+. + +|+... .-.+.+ ....+++|||||++.+ +...+..|...+..-.
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~GGg~~-~~pG~l----~~A~gGvLfLDEi~e~---------~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVGGGAI-PGPGEI----SLAHNGVLFLDELPEF---------ERRTLDALREPIESGQI 323 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhCCCce-ehhhHh----hhccCCEEecCCchhC---------CHHHHHHHHHHHHcCcE
Confidence 000 0 011000 001122 2334679999999875 4455566666553211
Q ss_pred ---------CCCCCEEEEEeeCCCC---------------------CCcHHHhccccceEeecCCCHHHHHH--------
Q 009856 372 ---------DQSRDIVLVLATNRPG---------------------DLDSAITDRIDEVIEFPLPREEERFK-------- 413 (523)
Q Consensus 372 ---------~~~~~v~iI~ttn~~~---------------------~l~~al~~Rf~~~i~~~~p~~~er~~-------- 413 (523)
..+.++.+|+|+|... .++.++++|||..+.++.|+.++...
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess 403 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESS 403 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCCh
Confidence 1245789999999742 47789999999999999987542211
Q ss_pred --HHHHHHHhhccCCCCCCCchhhhhhhhhh--hhhhhhccCCHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHcCCC
Q 009856 414 --LLKLYLKKYLCSDEGDSSSLKWGHLFKKQ--QQKITIKDLSDNVIQEA--ARKTEGFSGREIAKLMASVQAAVYARPD 487 (523)
Q Consensus 414 --il~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l--a~~t~G~sgrdI~~L~~~~~~a~~~~~~ 487 (523)
+.+........... ....+.... ..-.....++++....+ +...-|+|+|....++..+...+...+.
T Consensus 404 ~~i~~rV~~ar~~q~~------r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 404 ATVKQRVMAARERQFK------RQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred HHHHHHHhhHHHHHHH------HHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11111100000000 000000000 00011123455554433 2234589999999999999999999999
Q ss_pred CccCHHHHHHHHHHH
Q 009856 488 CVLDSQLFREVVEYK 502 (523)
Q Consensus 488 ~~it~e~~~~~l~~~ 502 (523)
..++.+|+.+|+...
T Consensus 478 ~~V~~~hv~eAl~yR 492 (506)
T PRK09862 478 DIITRQHLQEAVSYR 492 (506)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999876
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2e-10 Score=125.99 Aligned_cols=168 Identities=18% Similarity=0.250 Sum_probs=124.5
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...++-+||-+.-..++-+++.. ...+|-+|.|+||+|||.++..+|... +..++.++.+.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R--------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR--------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc--------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 34568899987777776665542 111246899999999999999999987 344555655544
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. .+-|+....++.+.+...... +.||||||++.+.+.....+.+.+..+.|...| ..+.+.+|++|...+
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARGeL~~IGATT~~EY 311 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARGELRCIGATTLDEY 311 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcCCeEEEEeccHHHH
Confidence 2 266788888999999988777 899999999999876654331334455666666 355678888875432
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhcc
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 424 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~ 424 (523)
.-|++|-+|| ..|.+..|+.++-..||+-.-.+|..
T Consensus 312 Rk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 312 RKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred HHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 4589999999 89999999999999999988777654
No 220
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=2.8e-10 Score=118.41 Aligned_cols=139 Identities=20% Similarity=0.268 Sum_probs=83.5
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----eeEEecC------Cc--
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-----YAMMTGG------DV-- 311 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~-----~~~v~~~------~~-- 311 (523)
++++++.+...+.+...+.. .++++|+||||||||++|+.+|..+... +..+..+ ++
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 57777777666665443331 2469999999999999999999987431 1111111 11
Q ss_pred ----ccchhhH-HHHHHHHHHHHHhc-CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------------
Q 009856 312 ----APLGAQA-VTKIHEIFDWAKKS-KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-------------- 371 (523)
Q Consensus 312 ----~~~~~~~-~~~l~~~f~~a~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-------------- 371 (523)
...+... .+.+..++..|... ..+++|||||++..-.. .++..++..++
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~-----------kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS-----------KVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH-----------Hhhhhhhhhccccccccccceeeec
Confidence 0011000 11233344455443 25789999999874221 11111111111
Q ss_pred --------CCCCCEEEEEeeCCCC----CCcHHHhccccceEeecC
Q 009856 372 --------DQSRDIVLVLATNRPG----DLDSAITDRIDEVIEFPL 405 (523)
Q Consensus 372 --------~~~~~v~iI~ttn~~~----~l~~al~~Rf~~~i~~~~ 405 (523)
..+.++.||+|+|..+ .+|.||++|| ..|.+.+
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 1346899999999887 7999999999 6676665
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.17 E-value=3.4e-10 Score=99.39 Aligned_cols=123 Identities=25% Similarity=0.343 Sum_probs=78.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCC---eeEEecCCccc---------------chhhHHHHHHHHHHHHHhcCCce
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGDVAP---------------LGAQAVTKIHEIFDWAKKSKKGL 336 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~---~~~v~~~~~~~---------------~~~~~~~~l~~~f~~a~~~~~~~ 336 (523)
..+++|+||||||||++++.+|..++.+ ++.+++..... ............+..+.... +.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK-PD 80 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC-CC
Confidence 3579999999999999999999999775 77776654322 11233445566676676544 58
Q ss_pred EEEEccchhhhhhcccccCcHHHHHHHHH----HHHHhCCCCCCEEEEEeeCC-CCCCcHHHhccccceEeecCC
Q 009856 337 LLFIDEADAFLCERNSIHMSEAQRSALNA----LLFRTGDQSRDIVLVLATNR-PGDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 337 vL~iDEid~l~~~~~~~~~~~~~~~~l~~----ll~~~~~~~~~v~iI~ttn~-~~~l~~al~~Rf~~~i~~~~p 406 (523)
+|||||++.+..... ...... ..........+..+|+++|. ....+..+..|++..+.+..+
T Consensus 81 viiiDei~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 81 VLILDEITSLLDAEQ--------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEEECCcccCCHHH--------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999998754221 111110 00111123456788888886 334455555588877777654
No 222
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.16 E-value=6.5e-11 Score=105.63 Aligned_cols=126 Identities=25% Similarity=0.425 Sum_probs=83.4
Q ss_pred ccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC---CeeEEecCCcccchhhHHHHHHHH
Q 009856 249 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGGDVAPLGAQAVTKIHEI 325 (523)
Q Consensus 249 ig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~---~~~~v~~~~~~~~~~~~~~~l~~~ 325 (523)
||.+...+.+..-+..+.....+ |||+|+|||||+++|++|+...+. +|+.++|.... .+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~p------vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~ 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSP------VLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AEL 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCc------EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHH
Confidence 56777777777777766654444 999999999999999999998754 55655555432 223
Q ss_pred HHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC-------CCCcHHHhcccc
Q 009856 326 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-------GDLDSAITDRID 398 (523)
Q Consensus 326 f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~-------~~l~~al~~Rf~ 398 (523)
+..+ .++.|||+|+|.+ +...+..|..++.... ..++.+|++|..+ ..+++.|..||.
T Consensus 65 l~~a----~~gtL~l~~i~~L---------~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 65 LEQA----KGGTLYLKNIDRL---------SPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp HHHC----TTSEEEEECGCCS----------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred HHHc----CCCEEEECChHHC---------CHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 3322 4679999999987 5567777777776643 4556788877543 246788888874
Q ss_pred -ceEeecC
Q 009856 399 -EVIEFPL 405 (523)
Q Consensus 399 -~~i~~~~ 405 (523)
..|.+|+
T Consensus 130 ~~~i~lPp 137 (138)
T PF14532_consen 130 QLEIHLPP 137 (138)
T ss_dssp TCEEEE--
T ss_pred CCEEeCCC
Confidence 3444443
No 223
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.13 E-value=1.8e-09 Score=110.02 Aligned_cols=247 Identities=17% Similarity=0.224 Sum_probs=145.6
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-------CCCeeEEecCCccc-
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAMMTGGDVAP- 313 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~v~~~~~~~- 313 (523)
...|.-++|++.++..|..- .+ .+...++||.|+.|||||+++++|+.-| |++|- |....+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~--av------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~---cdP~~P~ 81 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN--AV------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFN---CDPDDPE 81 (423)
T ss_pred ccchhhhcCchHHHHHHhhh--hc------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCC---CCCCChh
Confidence 45678899999999987543 11 2344679999999999999999999987 23221 111000
Q ss_pred -----------------------------chhhHHHHH------HHHHH-------H-HHhcCCceEEEEccchhhhhhc
Q 009856 314 -----------------------------LGAQAVTKI------HEIFD-------W-AKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 314 -----------------------------~~~~~~~~l------~~~f~-------~-a~~~~~~~vL~iDEid~l~~~~ 350 (523)
++ .+...+ ..... . .......+||++||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~-ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLG-ATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCc-cchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 00 011101 11111 0 001123469999999876
Q ss_pred ccccCcHHHHHHHHHHHHHh----C------CCCCCEEEEEeeCCC-CCCcHHHhccccceEeecCCC-HHHHHHHHHHH
Q 009856 351 NSIHMSEAQRSALNALLFRT----G------DQSRDIVLVLATNRP-GDLDSAITDRIDEVIEFPLPR-EEERFKLLKLY 418 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~----~------~~~~~v~iI~ttn~~-~~l~~al~~Rf~~~i~~~~p~-~~er~~il~~~ 418 (523)
+...+.+|...+..- . ..+.++++|+|+|.- ..|.|.|++||+..|....|. .++|..|+.+.
T Consensus 157 -----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 157 -----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred -----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 445555555555431 0 234589999999975 479999999999999986665 67888888887
Q ss_pred HHhhccCCCCCCCchhhhhhhhhh-------hhhhhhccCCHHHHHHHHHHCC--CCC-HH-HHHHHHHHHHHHHHcCCC
Q 009856 419 LKKYLCSDEGDSSSLKWGHLFKKQ-------QQKITIKDLSDNVIQEAARKTE--GFS-GR-EIAKLMASVQAAVYARPD 487 (523)
Q Consensus 419 l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~la~~t~--G~s-gr-dI~~L~~~~~~a~~~~~~ 487 (523)
+... . .+......|...-... ...+.-..+++.....++..+. +.. .| +|. ++..+.+.+...+.
T Consensus 232 ~~f~-~--~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~-~~r~a~a~aa~~Gr 307 (423)
T COG1239 232 LAFE-A--VPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIV-VVRAAKALAALRGR 307 (423)
T ss_pred HHhh-c--CcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhH-HHHHHHHHHHhcCc
Confidence 6642 1 1111111222211111 2223333567766666665532 112 12 333 33444444555567
Q ss_pred CccCHHHHHHHHHHHHHhhhhcchhh
Q 009856 488 CVLDSQLFREVVEYKVEEHHQRIKLA 513 (523)
Q Consensus 488 ~~it~e~~~~~l~~~~~~~~~~~~~~ 513 (523)
..++.+++..+..-..+...+...+.
T Consensus 308 ~~v~~~Di~~a~~l~l~hR~~~~~~~ 333 (423)
T COG1239 308 TEVEEEDIREAAELALLHRRRRKPFI 333 (423)
T ss_pred eeeehhhHHHHHhhhhhhhhcccccc
Confidence 88889999999999877555444333
No 224
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.12 E-value=9.9e-12 Score=107.14 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=59.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecC-Cccc---chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG-DVAP---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS 352 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~-~~~~---~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~ 352 (523)
|+||.|+||+|||++|+++|+.+|..|..+.+. ++.+ .|......-...|.+...---..|+++||+...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 599999999999999999999999999988764 3322 000000000000100000001248999999885
Q ss_pred ccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEeeCCCC-----CCcHHHhccc
Q 009856 353 IHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPG-----DLDSAITDRI 397 (523)
Q Consensus 353 ~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~ttn~~~-----~l~~al~~Rf 397 (523)
++..++.+...+..-. .-+.++.||+|.|..+ .++.++++||
T Consensus 75 ---ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 ---PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ---CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 4456666666665421 2345788999999866 6899999998
No 225
>PRK12377 putative replication protein; Provisional
Probab=99.12 E-value=5.9e-10 Score=108.81 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred ccccCCCcccC-HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 241 AIKNNGDIILH-PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 241 ~~~~~~~vig~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
...+|+++... +.....+..+......... ...+++|+||||||||+||.+||..+ |.++++++..++.....
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 34567777653 2322233322222222211 23579999999999999999999987 56676666655433111
Q ss_pred hHHH---HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-----C
Q 009856 317 QAVT---KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-----D 388 (523)
Q Consensus 317 ~~~~---~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~-----~ 388 (523)
.... .....+. ......+|+|||++... .+......|..+++.-... ...+|+|||... .
T Consensus 146 ~~~~~~~~~~~~l~---~l~~~dLLiIDDlg~~~-------~s~~~~~~l~~ii~~R~~~--~~ptiitSNl~~~~l~~~ 213 (248)
T PRK12377 146 ESYDNGQSGEKFLQ---ELCKVDLLVLDEIGIQR-------ETKNEQVVLNQIIDRRTAS--MRSVGMLTNLNHEAMSTL 213 (248)
T ss_pred HHHhccchHHHHHH---HhcCCCEEEEcCCCCCC-------CCHHHHHHHHHHHHHHHhc--CCCEEEEcCCCHHHHHHH
Confidence 1110 1112222 22346799999997642 2445566666666543222 234788899642 3
Q ss_pred CcHHHhcccc----ceEeecCCC
Q 009856 389 LDSAITDRID----EVIEFPLPR 407 (523)
Q Consensus 389 l~~al~~Rf~----~~i~~~~p~ 407 (523)
+...+.+|+- ..|.|.-++
T Consensus 214 ~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 214 LGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred hhHHHHHHHhhCCCeEEEeCCcC
Confidence 5566777652 235665554
No 226
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=4.7e-09 Score=101.93 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=87.1
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCC----------------------eeEEecCCcccchhhHHHHHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLD----------------------YAMMTGGDVAPLGAQAVTKIHEIFDWAK 330 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------------~~~v~~~~~~~~~~~~~~~l~~~f~~a~ 330 (523)
.++..+||+||+|+||..+|.++|..+-+. +..+. +...+.+.+....+...+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~-p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIF-DQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEec-CCcccCCHHHHHHHHHHHccCc
Confidence 456679999999999999999999887321 11111 1111233444444444443221
Q ss_pred -hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCC
Q 009856 331 -KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 331 -~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p 406 (523)
...++.|++||++|.+ .....|.+|..+++++.++++|++|+.++.+.|.++||+ ..+.|+.+
T Consensus 84 ~e~~~~KV~II~~ae~m------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 84 VESNGKKIYIIYGIEKL------------NKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hhcCCCEEEEeccHhhh------------CHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 1234689999999986 346788999999999999999999999999999999999 67788777
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=8.6e-10 Score=112.17 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=88.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCC-------------------------eeEEecCCc-ccch----hhHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLD-------------------------YAMMTGGDV-APLG----AQAVTKI 322 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~-------------------------~~~v~~~~~-~~~~----~~~~~~l 322 (523)
..+..+||+||+|+|||++|+.+|+.+.+. |+.++...- ..-+ .-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 444579999999999999999999987431 222221100 0000 0123445
Q ss_pred HHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccc
Q 009856 323 HEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDE 399 (523)
Q Consensus 323 ~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~ 399 (523)
+.+...+.. .....|++||+++.+ +...... ++..++....++.||++|+.++.+.+.+.||| .
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------d~~a~na---LLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc-~ 165 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM---------NLQAANS---LLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC-R 165 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC---------CHHHHHH---HHHHHHhCcCCCEEEEEeCChHhChHHHHHHh-h
Confidence 555554433 234579999999986 3344444 44444444556788999999999999999999 8
Q ss_pred eEeecCCCHHHHHHHHHH
Q 009856 400 VIEFPLPREEERFKLLKL 417 (523)
Q Consensus 400 ~i~~~~p~~~er~~il~~ 417 (523)
.+.|++|+.++....+..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 999999999988776653
No 228
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=3.3e-09 Score=108.62 Aligned_cols=200 Identities=19% Similarity=0.209 Sum_probs=135.0
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC----C-CeeEEecCCcccchh---
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----L-DYAMMTGGDVAPLGA--- 316 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~----~-~~~~v~~~~~~~~~~--- 316 (523)
-..++|.+.-+..++.+...... ....+++++.|-||||||.+...+-..++ . ..++++|..+.....
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle----~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE----LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh----cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 36788888888887776654333 33345799999999999999987766552 2 347778775433110
Q ss_pred -------------hHHHHHHHHHHH-HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 009856 317 -------------QAVTKIHEIFDW-AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLA 382 (523)
Q Consensus 317 -------------~~~~~l~~~f~~-a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~t 382 (523)
.........|.. ......+.|+++||+|.|+.. .+.+|..++.+-.-....+++|+.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr---------~~~vLy~lFewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR---------SQTVLYTLFEWPKLPNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc---------ccceeeeehhcccCCcceeeeeee
Confidence 011112223322 223335779999999999632 244566666555556678889999
Q ss_pred eCCCCCCc---HHHhcc---ccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHH
Q 009856 383 TNRPGDLD---SAITDR---IDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 456 (523)
Q Consensus 383 tn~~~~l~---~al~~R---f~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (523)
+|..+.-| |.|..| -+..+.|++|+.++..+|+...+..... ..+-+..+
T Consensus 296 ANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t------------------------~~~~~~Ai 351 (529)
T KOG2227|consen 296 ANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST------------------------SIFLNAAI 351 (529)
T ss_pred hhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc------------------------cccchHHH
Confidence 98865433 333333 2468999999999999999999887543 01334578
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHH
Q 009856 457 QEAARKTEGFSGREIAKLMASVQAAV 482 (523)
Q Consensus 457 ~~la~~t~G~sgrdI~~L~~~~~~a~ 482 (523)
...|.+..|.|| |+++++..++.+.
T Consensus 352 e~~ArKvaa~SG-DlRkaLdv~R~ai 376 (529)
T KOG2227|consen 352 ELCARKVAAPSG-DLRKALDVCRRAI 376 (529)
T ss_pred HHHHHHhccCch-hHHHHHHHHHHHH
Confidence 889999999999 9999998766444
No 229
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.06 E-value=4.9e-09 Score=114.88 Aligned_cols=139 Identities=18% Similarity=0.247 Sum_probs=86.1
Q ss_pred CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----C-------------CCCCEEEEEeeCCC--CCCcHHH
Q 009856 334 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D-------------QSRDIVLVLATNRP--GDLDSAI 393 (523)
Q Consensus 334 ~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~-------------~~~~v~iI~ttn~~--~~l~~al 393 (523)
.+++|||||++.| +...+..|..+++.-. . -+-++.+|+++|.. ..++|.|
T Consensus 226 nGGtL~LDei~~L---------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 226 HKGVLFIDEINTL---------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred CCcEEEEeChHhC---------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 3568999999887 4456666666664311 0 11267899999874 5678999
Q ss_pred hcccc---ceEeecC--CC-HHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC---C
Q 009856 394 TDRID---EVIEFPL--PR-EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT---E 464 (523)
Q Consensus 394 ~~Rf~---~~i~~~~--p~-~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t---~ 464 (523)
.+||. ..+.|+. ++ .+.+..+++.+...... .. ....++++.+..|.... .
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~-~G-------------------~l~~f~~eAVa~LI~~~~R~a 356 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKR-DG-------------------KIPHFDRDAVEEIIREAKRRA 356 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhh-cc-------------------CCCCCCHHHHHHHHHHHHHHh
Confidence 99986 4555543 22 34444444332222211 00 01247888877776532 1
Q ss_pred C------CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 465 G------FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 465 G------~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
| +..++|..|+..+...+.......++.+++..++..
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2 346788889987777777667778999999877643
No 230
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-09 Score=111.62 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=105.9
Q ss_pred HHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC-ccc-chhhHHHHHHHHHHHHHhcCCceEE
Q 009856 261 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAP-LGAQAVTKIHEIFDWAKKSKKGLLL 338 (523)
Q Consensus 261 ~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~-~~~-~~~~~~~~l~~~f~~a~~~~~~~vL 338 (523)
++..++++. ..|..++||.||||+|||.||-.+|..++.||+.+..++ +.. ....-+.++..+|..|.++. -+||
T Consensus 526 lv~qvk~s~--~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsii 602 (744)
T KOG0741|consen 526 LVQQVKNSE--RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSII 602 (744)
T ss_pred HHHHhhccc--cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEE
Confidence 344444443 346678999999999999999999999999999875544 333 45566778999999997665 6899
Q ss_pred EEccchhhhhhcc-cccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCc-HHHhccccceEeecCCCH-HHHHHHH
Q 009856 339 FIDEADAFLCERN-SIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD-SAITDRIDEVIEFPLPRE-EERFKLL 415 (523)
Q Consensus 339 ~iDEid~l~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~-~al~~Rf~~~i~~~~p~~-~er~~il 415 (523)
++|+++.|+.-.. ...++......|..++.......++..|++||...+-|. -.+.+.|+..+.+|..+. ++...++
T Consensus 603 vvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 603 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred EEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHH
Confidence 9999999865332 122344444555555544433444677777776544332 245668888999988876 5666665
Q ss_pred HH
Q 009856 416 KL 417 (523)
Q Consensus 416 ~~ 417 (523)
+.
T Consensus 683 ~~ 684 (744)
T KOG0741|consen 683 EE 684 (744)
T ss_pred HH
Confidence 54
No 231
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=7.3e-09 Score=102.74 Aligned_cols=123 Identities=18% Similarity=0.150 Sum_probs=86.9
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCC----------------eeEEecCCc-ccchhhHHHHHHHHHHHHHhcCC
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------YAMMTGGDV-APLGAQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------~~~v~~~~~-~~~~~~~~~~l~~~f~~a~~~~~ 334 (523)
+.-+..+||+||+|+||+.+|.++|..+-+. +..+....- ...+.+....+...+.......+
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 3444679999999999999999999987432 111211000 01233333333333333222345
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCC
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~ 407 (523)
..|++||++|.|. ...-|.+|..++.++.+++||+.|+.++.+.|.++||| ..+.|+++.
T Consensus 96 ~kv~ii~~ad~mt------------~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 96 YKIYIIHEADRMT------------LDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccchh
Confidence 6799999999962 45678888888989999999999999999999999999 788888753
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.03 E-value=1.3e-08 Score=109.34 Aligned_cols=210 Identities=19% Similarity=0.239 Sum_probs=125.8
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc-cc------
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-AP------ 313 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~-~~------ 313 (523)
.+.+.+++..+..-.+.|+..+..... +..+.+-+||+||||||||++++.||+++|..+.....+.. ..
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~---~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~ 90 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFS---GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQED 90 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhc---cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccc
Confidence 455668888887777777666654322 22334468899999999999999999999887766432211 00
Q ss_pred -chh-----h-HHHHHHHHHHH-----HHh----------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 314 -LGA-----Q-AVTKIHEIFDW-----AKK----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 314 -~~~-----~-~~~~l~~~f~~-----a~~----------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
..+ + .... ...|.. ++. .....||+|||+-.++... ....+..|..++..
T Consensus 91 d~~s~~~~~~~f~sq-~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l~~-- 162 (519)
T PF03215_consen 91 DFESDFNKFDEFLSQ-SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYLRS-- 162 (519)
T ss_pred cccccccccccccch-hhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHHHc--
Confidence 000 0 0011 111211 110 1235689999997653211 12233334444332
Q ss_pred CCCC-CEEEEEe-e------CCC--------CCCcHHHhcccc-ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchh
Q 009856 372 DQSR-DIVLVLA-T------NRP--------GDLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 434 (523)
Q Consensus 372 ~~~~-~v~iI~t-t------n~~--------~~l~~al~~Rf~-~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~ 434 (523)
... +++||+| + |.. ..+++.++.... .+|.|.+-...-..+.|...+...........
T Consensus 163 -~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~---- 237 (519)
T PF03215_consen 163 -SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN---- 237 (519)
T ss_pred -CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc----
Confidence 223 7888887 1 111 136677776322 78999999998888888888776421000000
Q ss_pred hhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 009856 435 WGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY 483 (523)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~ 483 (523)
........++.|+..+.| ||+..++.++..+.
T Consensus 238 -------------~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 -------------KVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred -------------cCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 001224468999999888 99999999999998
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.02 E-value=2.4e-08 Score=101.64 Aligned_cols=121 Identities=24% Similarity=0.343 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhH-H---HHHHHHHHHHHhcCCceEEEEccchhhhh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA-V---TKIHEIFDWAKKSKKGLLLFIDEADAFLC 348 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~-~---~~l~~~f~~a~~~~~~~vL~iDEid~l~~ 348 (523)
.+++|+||||||||+|+.++|..+ |..+++++..++....... . ......+. ......+|+|||++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~---~l~~~DLLIIDDlG~e~- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYD---LLINCDLLIIDDLGTEK- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHH---HhccCCEEEEeccCCCC-
Confidence 579999999999999999999987 6777777776654311110 0 01111122 22235699999997642
Q ss_pred hcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC-C----CCcHHHhcccc---ceEeecCCCH
Q 009856 349 ERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-G----DLDSAITDRID---EVIEFPLPRE 408 (523)
Q Consensus 349 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~-~----~l~~al~~Rf~---~~i~~~~p~~ 408 (523)
.++.....|..++....... -.+|+|||.+ . .+++.+.+|+- .+|.|.-.+.
T Consensus 260 ------~t~~~~~~Lf~iin~R~~~~--k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 260 ------ITEFSKSELFNLINKRLLRQ--KKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGEDI 319 (329)
T ss_pred ------CCHHHHHHHHHHHHHHHHCC--CCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcCh
Confidence 23444555555554432222 2378888863 2 35677888763 3455554443
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.98 E-value=4.3e-09 Score=102.57 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=88.7
Q ss_pred ccccCCCcccC-HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 241 AIKNNGDIILH-PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 241 ~~~~~~~vig~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
...+|+++... +.....+..+.....+... ...+++|+||||||||+|+.+||..+ |.+++.++.+++.....
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~---~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFDG---NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhcc---CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 35577777644 3333344444333332211 12479999999999999999999988 67777776655432111
Q ss_pred hHH----HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-----
Q 009856 317 QAV----TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG----- 387 (523)
Q Consensus 317 ~~~----~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~----- 387 (523)
... .....++.. .....+|+|||++... .+......+..++..-. ..+..+|+|||...
T Consensus 144 ~~~~~~~~~~~~~l~~---l~~~dlLvIDDig~~~-------~s~~~~~~l~~Ii~~Ry--~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 144 DTFSNSETSEEQLLND---LSNVDLLVIDEIGVQT-------ESRYEKVIINQIVDRRS--SSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred HHHhhccccHHHHHHH---hccCCEEEEeCCCCCC-------CCHHHHHHHHHHHHHHH--hCCCCEEEeCCCCHHHHHH
Confidence 110 011223322 2246799999998742 23445566776665422 22335888998642
Q ss_pred CCcHHHhcccc----ceEeecCCC
Q 009856 388 DLDSAITDRID----EVIEFPLPR 407 (523)
Q Consensus 388 ~l~~al~~Rf~----~~i~~~~p~ 407 (523)
.+...+.+|+. ..|.|.-++
T Consensus 212 ~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 212 LLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred HhChHHHHHHHHCCceEEEeeCCc
Confidence 35666777762 356666554
No 235
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=3.2e-08 Score=98.53 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=87.7
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCCee----------------EEecCCccc-------chhhHHHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA----------------MMTGGDVAP-------LGAQAVTKIHEIFDW 328 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~----------------~v~~~~~~~-------~~~~~~~~l~~~f~~ 328 (523)
+..+..+||+|| +||+++|..+|..+-+.-. .-+.+|+.. +..+....+...+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 445567999996 6899999999988732110 001122211 222333333333333
Q ss_pred HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCH
Q 009856 329 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPRE 408 (523)
Q Consensus 329 a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~ 408 (523)
....++..|++||++|.+. ...-|.+|+.+++++.++++|++|+.++.+-|.++||| ..|.|+. +.
T Consensus 99 ~p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~ 164 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMH------------VNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-NE 164 (290)
T ss_pred CcccCCcEEEEeehhhhcC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-cH
Confidence 2223456799999999962 45788899999999999999999999999999999999 8899976 55
Q ss_pred HHHHHHHH
Q 009856 409 EERFKLLK 416 (523)
Q Consensus 409 ~er~~il~ 416 (523)
+....++.
T Consensus 165 ~~~~~~L~ 172 (290)
T PRK07276 165 AYLIQLLE 172 (290)
T ss_pred HHHHHHHH
Confidence 55444443
No 236
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.1e-07 Score=90.95 Aligned_cols=185 Identities=23% Similarity=0.248 Sum_probs=124.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCC---eeEEecCCccc----------chh--------hHHHHHHHHHHHHHhcCCce
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGDVAP----------LGA--------QAVTKIHEIFDWAKKSKKGL 336 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~---~~~v~~~~~~~----------~~~--------~~~~~l~~~f~~a~~~~~~~ 336 (523)
+.++|+.|||||++++++...++.+ .++++...++. +.. .....-+.+.........|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 8899999999999999777766433 22222222111 000 11122233334444555668
Q ss_pred EEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcH--------HHhccccceEeecCCCH
Q 009856 337 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS--------AITDRIDEVIEFPLPRE 408 (523)
Q Consensus 337 vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~--------al~~Rf~~~i~~~~p~~ 408 (523)
++++||++.+. ...-..+..|.....+.++...+++.... .|.+ .+-.||+..|.+++.+.
T Consensus 134 ~l~vdEah~L~---------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp--~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 134 VLMVDEAHDLN---------DSALEALRLLTNLEEDSSKLLSIVLIGQP--KLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred EEeehhHhhhC---------hhHHHHHHHHHhhcccccCceeeeecCCc--ccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 99999999873 34455666666665556666556655543 2322 23348876699999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCC
Q 009856 409 EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDC 488 (523)
Q Consensus 409 ~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~ 488 (523)
++-...+++.++..... ..-++++.+..+...+.| .|+-|..++..+..+++..+.+
T Consensus 203 ~~t~~yl~~~Le~a~~~----------------------~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~ 259 (269)
T COG3267 203 AETGLYLRHRLEGAGLP----------------------EPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGED 259 (269)
T ss_pred HHHHHHHHHHHhccCCC----------------------cccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999876431 113788899999999999 4559999999888888888888
Q ss_pred ccCHHHHH
Q 009856 489 VLDSQLFR 496 (523)
Q Consensus 489 ~it~e~~~ 496 (523)
.++...++
T Consensus 260 ~v~~a~~~ 267 (269)
T COG3267 260 GVSEAEIK 267 (269)
T ss_pred ccchhhcc
Confidence 88876654
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.95 E-value=5.4e-09 Score=100.83 Aligned_cols=168 Identities=21% Similarity=0.291 Sum_probs=90.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCC---CeeEEecCCccc------c------------------------------h
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGGDVAP------L------------------------------G 315 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~---~~~~v~~~~~~~------~------------------------------~ 315 (523)
...++|+||+|+|||++++.+...+.. ..+++....... . .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999998732 111121111000 0 0
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhh-hhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC------CC
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL-CERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP------GD 388 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~------~~ 388 (523)
......+..++..........||+|||++.+. .... .......+..++..... ..++.+|+++... ..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----DKDFLKSLRSLLDSLLS-QQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----THHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----hHHHHHHHHHHHhhccc-cCCceEEEECCchHHHHHhhc
Confidence 11223344555555554445899999999987 2111 12333344444444222 3445455444331 12
Q ss_pred CcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 389 LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 389 l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
-...+..|+.. +.+++.+.++..+++...+... . .. ..++..++.+...+.|.++
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~----------------------~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I----------------------KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------------------------------HHHHHHHHHHHTT-HH
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h----------------------cc-cCCHHHHHHHHHHhCCCHH
Confidence 23446678855 9999999999999999987754 2 00 1488899999999988444
Q ss_pred HHHHH
Q 009856 469 REIAK 473 (523)
Q Consensus 469 rdI~~ 473 (523)
-|..
T Consensus 230 -~l~~ 233 (234)
T PF01637_consen 230 -YLQE 233 (234)
T ss_dssp -HHHH
T ss_pred -HHhc
Confidence 5543
No 238
>PRK08181 transposase; Validated
Probab=98.94 E-value=3.5e-09 Score=104.65 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=73.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhHH--HHHHHHHHHHHhcCCceEEEEccchhhhhhc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAV--TKIHEIFDWAKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~~--~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~ 350 (523)
.+++|+||||||||+||.+++..+ |..+++++..++........ ......+.. ...+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~---l~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK---LDKFDLLILDDLAYVTK-- 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH---HhcCCEEEEeccccccC--
Confidence 469999999999999999999765 66777776655433111110 112223322 23457999999987532
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC----------CCcHHHhcccc---ceEeecCCCHH
Q 009856 351 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG----------DLDSAITDRID---EVIEFPLPREE 409 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~----------~l~~al~~Rf~---~~i~~~~p~~~ 409 (523)
+......|..++...... -.+|+|||.+- .+..++++|+- .+|.|.-.+..
T Consensus 182 -----~~~~~~~Lf~lin~R~~~---~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 182 -----DQAETSVLFELISARYER---RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred -----CHHHHHHHHHHHHHHHhC---CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccch
Confidence 233444555555443222 24888888752 24467778762 45666665544
No 239
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.94 E-value=1.9e-08 Score=109.63 Aligned_cols=249 Identities=18% Similarity=0.166 Sum_probs=145.1
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCC------CCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE-ecCCcccch--
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQA------PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM-TGGDVAPLG-- 315 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~------p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v-~~~~~~~~~-- 315 (523)
...+.|++.+++.+.-. .+.......+ .--||||.|.||||||.|.+.+++.+...++.- .++.-.++.
T Consensus 285 aPsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 45678888888776432 2222211111 113799999999999999999998875543321 111111110
Q ss_pred --hhHHHHHHHHH--HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh--C--------CCCCCEEEEE
Q 009856 316 --AQAVTKIHEIF--DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT--G--------DQSRDIVLVL 381 (523)
Q Consensus 316 --~~~~~~l~~~f--~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~--~--------~~~~~v~iI~ 381 (523)
.+.. ..+.. ..|.-...++|++|||+|++ +...+..+...+..- . .-+..+-|++
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm---------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKM---------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCC---------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 0000 00000 00112334679999999986 556666666655431 1 1123445677
Q ss_pred eeCCCC-------------CCcHHHhccccceEee-cCCCHHHHHHHHHHHHHhhccCCCCCCCc--------hhhhhhh
Q 009856 382 ATNRPG-------------DLDSAITDRIDEVIEF-PLPREEERFKLLKLYLKKYLCSDEGDSSS--------LKWGHLF 439 (523)
Q Consensus 382 ttn~~~-------------~l~~al~~Rf~~~i~~-~~p~~~er~~il~~~l~~~~~~~~~~~~~--------~~~~~~~ 439 (523)
++|+.. .|+++|+||||.++.+ +.|+.+.=..+..+.+..+....+....+ .....+.
T Consensus 432 AaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~l 511 (682)
T COG1241 432 AANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELL 511 (682)
T ss_pred hhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHH
Confidence 888754 4789999999976654 66777666777777776664211111000 0000000
Q ss_pred hh-hhhhhh-h-ccCCHHHHHHHHHHC---------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 440 KK-QQQKIT-I-KDLSDNVIQEAARKT---------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 440 ~~-~~~~~~-~-~~~~~~~l~~la~~t---------------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
.. ..+... + ..+++++.+.|.... -..+.|+|..++..+.+.|..+-...++.+|+++|+.-
T Consensus 512 rkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~l 591 (682)
T COG1241 512 RKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRL 591 (682)
T ss_pred HHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 00 011111 2 457777777665432 12568999999999999999888899999999999998
Q ss_pred HHHhh
Q 009856 502 KVEEH 506 (523)
Q Consensus 502 ~~~~~ 506 (523)
.....
T Consensus 592 v~~~l 596 (682)
T COG1241 592 VDFSL 596 (682)
T ss_pred HHHHH
Confidence 76543
No 240
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.93 E-value=1.2e-08 Score=110.93 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=129.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCccc--chhhHHHHHHHHHHH--------HHhcCCceEEEEcc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP--LGAQAVTKIHEIFDW--------AKKSKKGLLLFIDE 342 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~--~~~~~~~~l~~~f~~--------a~~~~~~~vL~iDE 342 (523)
.++|+|.|++|||||+++++++..+.. ||+.+..+--.. +|+- .+...+.. ......++||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~---Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL---DLAATLRAGRPVAQRGLLAEADGGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc---hHHhHhhcCCcCCCCCceeeccCCEEEecC
Confidence 468999999999999999999998854 776654322110 2211 11111100 00122357999999
Q ss_pred chhhhhhcccccCcHHHHHHHHHHHHHh-------C---CCCCCEEEEEeeCCC---CCCcHHHhccccceEeecCCCHH
Q 009856 343 ADAFLCERNSIHMSEAQRSALNALLFRT-------G---DQSRDIVLVLATNRP---GDLDSAITDRIDEVIEFPLPREE 409 (523)
Q Consensus 343 id~l~~~~~~~~~~~~~~~~l~~ll~~~-------~---~~~~~v~iI~ttn~~---~~l~~al~~Rf~~~i~~~~p~~~ 409 (523)
+..+ +....+.|..-+..- + ..+.+|++|+|-|.. ..+++++++||+.+|.++.|+..
T Consensus 102 ~n~~---------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~ 172 (584)
T PRK13406 102 AERL---------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALR 172 (584)
T ss_pred cccC---------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChH
Confidence 9876 334444444443321 0 134578888875432 45999999999999999999876
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC--CCC-CHHHHHHHHHHHHHHHHcCC
Q 009856 410 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGF-SGREIAKLMASVQAAVYARP 486 (523)
Q Consensus 410 er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~-sgrdI~~L~~~~~~a~~~~~ 486 (523)
+.... .. . .. .+. .....+....+++..+..++..+ -|. |.|--..++..+.+.+...+
T Consensus 173 ~~~~~--------~~----~--~~---~I~-~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~G 234 (584)
T PRK13406 173 DAREI--------PI----D--AD---DIA-AARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAG 234 (584)
T ss_pred Hhccc--------CC----C--HH---HHH-HHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcC
Confidence 54310 00 0 00 000 00111112247788877765543 365 88888888888999999889
Q ss_pred CCccCHHHHHHHHHHHHHhhhhc
Q 009856 487 DCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 487 ~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
...|+.+|+..++...++.....
T Consensus 235 r~~V~~~dv~~Aa~lvL~hR~~~ 257 (584)
T PRK13406 235 RTAVEEEDLALAARLVLAPRATR 257 (584)
T ss_pred CCCCCHHHHHHHHHHHHHhhccC
Confidence 99999999999999999865543
No 241
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=4.9e-08 Score=97.95 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=92.7
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCC-----------C--eeEEecCCcccchhhHHHHHHHHHHHHHhc----CC
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGL-----------D--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKS----KK 334 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~-----------~--~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~----~~ 334 (523)
+.-.+.+||+|+.|+||+.+|+.++..+-+ | +..++... ..... ..+..+....... .+
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~i~v---d~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KDLSK---SEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-CcCCH---HHHHHHHHHhccCCcccCC
Confidence 334456889999999999999999998722 2 22222000 11222 2333333333222 25
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHH
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKL 414 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~i 414 (523)
..|++||++|.+ .....+.++..++.++.++++|++|+.++.+-|.+.||| .++.|++|+.++....
T Consensus 91 ~KvvII~~~e~m------------~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 91 KKILIIKNIEKT------------SNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILAK 157 (299)
T ss_pred ceEEEEeccccc------------CHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHHH
Confidence 689999999886 234677888888989999999999988899999999999 8999999999888776
Q ss_pred HHH
Q 009856 415 LKL 417 (523)
Q Consensus 415 l~~ 417 (523)
+..
T Consensus 158 l~~ 160 (299)
T PRK07132 158 LLS 160 (299)
T ss_pred HHH
Confidence 654
No 242
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.87 E-value=7.4e-08 Score=101.81 Aligned_cols=247 Identities=17% Similarity=0.121 Sum_probs=143.4
Q ss_pred cCCCcccCHHHHHHHHHHH-HHHhcchhcCCCCc---eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc--cc----
Q 009856 244 NNGDIILHPSLQRRIQHLA-KATANTKIHQAPFR---NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV--AP---- 313 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~-~~~~~~~~~~~p~~---~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~--~~---- 313 (523)
-|..|.|++.++.-+.-.+ --+......+.|.+ ||+|+|.||||||-+.++.+..+...++. +|..- ..
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSaAGLTaa 421 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSAAGLTAA 421 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccccccceEE
Confidence 4678899999888764322 11111111233333 79999999999999999999988665443 22110 00
Q ss_pred chh--hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-C--------CCCCCEEEEEe
Q 009856 314 LGA--QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-G--------DQSRDIVLVLA 382 (523)
Q Consensus 314 ~~~--~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-~--------~~~~~v~iI~t 382 (523)
+.. ++.....+ ..|.-...++|..|||||++-- ..+...+.++-+.. . .-+....||++
T Consensus 422 VvkD~esgdf~iE--AGALmLADnGICCIDEFDKMd~--------~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAA 491 (764)
T KOG0480|consen 422 VVKDEESGDFTIE--AGALMLADNGICCIDEFDKMDV--------KDQVAIHEAMEQQTISIAKAGVVATLNARTSILAA 491 (764)
T ss_pred EEecCCCCceeee--cCcEEEccCceEEechhcccCh--------HhHHHHHHHHHhheehheecceEEeecchhhhhhh
Confidence 000 00000000 0011223467999999999721 13333333333321 1 12234457888
Q ss_pred eCCCC-------------CCcHHHhccccce-EeecCCCHHHHHHHHHHHHHhhccCCCCCCC--------chhhhhhhh
Q 009856 383 TNRPG-------------DLDSAITDRIDEV-IEFPLPREEERFKLLKLYLKKYLCSDEGDSS--------SLKWGHLFK 440 (523)
Q Consensus 383 tn~~~-------------~l~~al~~Rf~~~-i~~~~p~~~er~~il~~~l~~~~~~~~~~~~--------~~~~~~~~~ 440 (523)
+|+.. .++++++||||.. |-++.|+...=..|..+.++.+......... ...|..+.+
T Consensus 492 ANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 492 ANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred cCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH
Confidence 88754 4789999999965 4568899888888888888775432111111 011111111
Q ss_pred hhhhhhhhccCCHHHHHHHHHH---------------CCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 441 KQQQKITIKDLSDNVIQEAARK---------------TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~la~~---------------t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
... +.++.+.-+.|... +.+.+.|+|..|+...++.|...-...+|.+++.++++-....
T Consensus 572 ~~~-----P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~S 646 (764)
T KOG0480|consen 572 NFK-----PKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKS 646 (764)
T ss_pred hcC-----ccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhh
Confidence 111 12333333333221 2356789999999998998888777899999999999887654
Q ss_pred h
Q 009856 506 H 506 (523)
Q Consensus 506 ~ 506 (523)
.
T Consensus 647 i 647 (764)
T KOG0480|consen 647 I 647 (764)
T ss_pred h
Confidence 4
No 243
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.87 E-value=4.9e-08 Score=99.24 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=47.2
Q ss_pred cCC-CcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-------CeeEEec
Q 009856 244 NNG-DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-------DYAMMTG 308 (523)
Q Consensus 244 ~~~-~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-------~~~~v~~ 308 (523)
-|+ +++|.+++...+...+....... ....+.++|+||||||||++|++|+..++. +++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 89999988777766555444221 223356899999999999999999999965 7777766
No 244
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.87 E-value=9.5e-08 Score=101.76 Aligned_cols=218 Identities=19% Similarity=0.189 Sum_probs=128.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhh----HHHHHHHHH--HHHHhcCCceEEEEccchhhhhhc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ----AVTKIHEIF--DWAKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~----~~~~l~~~f--~~a~~~~~~~vL~iDEid~l~~~~ 350 (523)
||||+|.||||||.+.+.+++.+....+ .+|-.-+..|-. -....+.+. ..|.-...+++.+|||||+|
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM---- 538 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM---- 538 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhh----
Confidence 7999999999999999999998744432 222110000000 000000000 01112234679999999997
Q ss_pred ccccCcHHHHHHHHHHHHHh----------CCCCCCEEEEEeeCCCC-------------CCcHHHhccccceE-eecCC
Q 009856 351 NSIHMSEAQRSALNALLFRT----------GDQSRDIVLVLATNRPG-------------DLDSAITDRIDEVI-EFPLP 406 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~----------~~~~~~v~iI~ttn~~~-------------~l~~al~~Rf~~~i-~~~~p 406 (523)
+...+.+|..+++.- ...+...-|++++|+.. .|+|.|+||||.++ -++.|
T Consensus 539 -----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~ 613 (804)
T KOG0478|consen 539 -----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKP 613 (804)
T ss_pred -----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCc
Confidence 456677777776541 12334566888888543 47899999998765 55777
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhh--hhh--hhhhccCCHHHHHHHHHHC---------CC---CCHHH
Q 009856 407 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK--QQQ--KITIKDLSDNVIQEAARKT---------EG---FSGRE 470 (523)
Q Consensus 407 ~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~la~~t---------~G---~sgrd 470 (523)
+...=+.|..+...-+.... ......-|...+.+ ..+ +.....+++++...+.... .| -++++
T Consensus 614 DE~~Dr~La~HivsLy~e~~-~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQ 692 (804)
T KOG0478|consen 614 DERSDRRLADHIVALYPETG-EKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQ 692 (804)
T ss_pred chhHHHHHHHHHHHhccccc-ccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHH
Confidence 77655667777666655422 11111111110000 111 1113346666655553221 12 35688
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 471 IAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
+..|+...++.+.......+...|+++++.-....
T Consensus 693 lesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 693 LESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 99999988888888778899999999998877543
No 245
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.87 E-value=1.1e-08 Score=103.11 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=73.7
Q ss_pred cccCCCcccCHH-HHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-chh
Q 009856 242 IKNNGDIILHPS-LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~-~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~~~ 316 (523)
..+|+++...+. ....+......+.... .+....+++|+||||||||+|+.++|+.+ |.++..+..+.+.. +..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~-~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP-PGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 356677765442 2222222222222211 12345689999999999999999999998 67777776654432 111
Q ss_pred h-HHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHH-HHHHHHHHH-hCCCCCCEEEEEeeCCC
Q 009856 317 Q-AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQR-SALNALLFR-TGDQSRDIVLVLATNRP 386 (523)
Q Consensus 317 ~-~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~-~~l~~ll~~-~~~~~~~v~iI~ttn~~ 386 (523)
. ..+.+...+. ......||+|||++.- ..+...+ .+|..+++. +. ....+|+|||.+
T Consensus 202 ~~~~~~~~~~l~---~l~~~dlLiIDDiG~e-------~~s~~~~~~ll~~Il~~R~~---~~~~ti~TSNl~ 261 (306)
T PRK08939 202 SISDGSVKEKID---AVKEAPVLMLDDIGAE-------QMSSWVRDEVLGVILQYRMQ---EELPTFFTSNFD 261 (306)
T ss_pred HHhcCcHHHHHH---HhcCCCEEEEecCCCc-------cccHHHHHHHHHHHHHHHHH---CCCeEEEECCCC
Confidence 0 0011222222 2334579999999763 2344444 345555432 22 234588999974
No 246
>PRK06526 transposase; Provisional
Probab=98.85 E-value=4.9e-09 Score=103.00 Aligned_cols=124 Identities=24% Similarity=0.331 Sum_probs=71.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-chh-hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGA-QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~~~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~ 350 (523)
.+++|+||||||||++|.+|+..+ |..+..++..++.. +.. ...+.+...+ .....+.+|+|||++.+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l---~~l~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAEL---VKLGRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHH---HHhccCCEEEEcccccCCC--
Confidence 479999999999999999998875 55555544443322 100 0001111122 2233467999999987522
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC----------CCcHHHhcccc---ceEeecCCCHHHHH
Q 009856 351 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG----------DLDSAITDRID---EVIEFPLPREEERF 412 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~----------~l~~al~~Rf~---~~i~~~~p~~~er~ 412 (523)
+......+..++...... ..+|+|||.+- .+-.++++|+- .+|.|..++...+.
T Consensus 174 -----~~~~~~~L~~li~~r~~~---~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R~~~ 240 (254)
T PRK06526 174 -----EPEAANLFFQLVSSRYER---ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRLKD 240 (254)
T ss_pred -----CHHHHHHHHHHHHHHHhc---CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcchhh
Confidence 334445566665443222 24788888752 12335666642 45666666654433
No 247
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.84 E-value=8.8e-08 Score=93.29 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=85.6
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEE-----ecCCcccch
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMM-----TGGDVAPLG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v-----~~~~~~~~~ 315 (523)
..++|++-+++.+-..+....+...+..| -.+-|+|+|||||+++++.||+.+ ..||+.. +++.-..+
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i- 159 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI- 159 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH-
Confidence 45899999999998888877776655444 345589999999999999999987 2233321 11111111
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh----CCCCCCEEEEEeeCCCC
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----GDQSRDIVLVLATNRPG 387 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~v~iI~ttn~~~ 387 (523)
.+.-..+.............+++++||+|+| ++..-++|..+|+.. +.++.+.++|+-+|...
T Consensus 160 e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm---------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 160 EDYKEELKNRVRGTVQACQRSLFIFDEVDKL---------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEechhhhc---------CHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 1111222222222223334579999999997 557778888888742 34667889999998643
No 248
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.81 E-value=1.9e-08 Score=100.00 Aligned_cols=168 Identities=21% Similarity=0.303 Sum_probs=89.7
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-ee--EEecCCcccchhh
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-YA--MMTGGDVAPLGAQ 317 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~-~~--~v~~~~~~~~~~~ 317 (523)
|...|.+++.+..--.+...++........ ++||+||+|||||++++.+-..+... +. .++++.. .
T Consensus 5 ~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~------pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~-----T 73 (272)
T PF12775_consen 5 PEMPFNEILVPTVDTVRYSYLLDLLLSNGR------PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ-----T 73 (272)
T ss_dssp --------T---HHHHHHHHHHHHHHHCTE------EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT-----H
T ss_pred cccccceEEeCcHHHHHHHHHHHHHHHcCC------cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC-----C
Confidence 344556666654444444555554443333 39999999999999999887665432 22 2333221 1
Q ss_pred HHHHHHHHHHHHHh----------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CC-------CCCEE
Q 009856 318 AVTKIHEIFDWAKK----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQ-------SRDIV 378 (523)
Q Consensus 318 ~~~~l~~~f~~a~~----------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~-------~~~v~ 378 (523)
....+......... ..+.+|+||||+..-.++. .+ .......|.+++..-+ +. -.++.
T Consensus 74 ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~--yg-tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~ 150 (272)
T PF12775_consen 74 TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDK--YG-TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQ 150 (272)
T ss_dssp HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---T--TS---HHHHHHHHHHHCSEEECTTTTEEEEECSEE
T ss_pred CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCC--CC-CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeE
Confidence 22222222211100 1134689999998643322 12 1123456666665533 11 12678
Q ss_pred EEEeeCCCC---CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 379 LVLATNRPG---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 379 iI~ttn~~~---~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
+|+++|.+. .+++.|.+.| .++.++.|+.+....|+..++..+.
T Consensus 151 ~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 151 FVAAMNPTGGRNPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp EEEEESSTTT--SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCCCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhc
Confidence 889888643 4788999999 8999999999999999999987654
No 249
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.81 E-value=2e-08 Score=98.72 Aligned_cols=100 Identities=27% Similarity=0.382 Sum_probs=61.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhHHH--HHHHHHHHHHhcCCceEEEEccchhhhhh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVT--KIHEIFDWAKKSKKGLLLFIDEADAFLCE 349 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~~~--~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 349 (523)
..+++|+||||||||+||-||+..+ |.++..++.+++..--..... .....+ ........||||||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l--~~~l~~~dlLIiDDlG~~--- 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKL--LRELKKVDLLIIDDIGYE--- 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHH--HHHhhcCCEEEEecccCc---
Confidence 4579999999999999999999987 677777776654431111111 111111 111334679999999874
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC
Q 009856 350 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 386 (523)
Q Consensus 350 ~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~ 386 (523)
.++......+..++........ .|+|||.+
T Consensus 180 ----~~~~~~~~~~~q~I~~r~~~~~---~~~tsN~~ 209 (254)
T COG1484 180 ----PFSQEEADLLFQLISRRYESRS---LIITSNLS 209 (254)
T ss_pred ----cCCHHHHHHHHHHHHHHHhhcc---ceeecCCC
Confidence 2244445555555544322222 28899875
No 250
>PF13173 AAA_14: AAA domain
Probab=98.80 E-value=2.2e-08 Score=88.11 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=73.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC--CCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 354 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~--~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~ 354 (523)
.++|+||+|||||++++.++..+. ..++++++.+.......... +...+... ......+|||||++.+.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~iDEiq~~~------- 74 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLEL-IKPGKKYIFIDEIQYLP------- 74 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHh-hccCCcEEEEehhhhhc-------
Confidence 489999999999999999998876 67778877664332111111 22222221 11245799999999851
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC----CCcHHHhccccceEeecCCCHHH
Q 009856 355 MSEAQRSALNALLFRTGDQSRDIVLVLATNRPG----DLDSAITDRIDEVIEFPLPREEE 410 (523)
Q Consensus 355 ~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~----~l~~al~~Rf~~~i~~~~p~~~e 410 (523)
.....+..+.+ ...++.||+|+.... .....+..|+ ..+.+.|++..|
T Consensus 75 ---~~~~~lk~l~d----~~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ---DWEDALKFLVD----NGPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ---cHHHHHHHHHH----hccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 23444555543 224566777665433 3345556687 688888888776
No 251
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=4.3e-08 Score=94.80 Aligned_cols=196 Identities=19% Similarity=0.256 Sum_probs=121.0
Q ss_pred EEEEcCCCCchHHHHHHHHH------HhCCCeeEEecCCccc--chhhHHHHHHHHHHHHHh-------cCCceEEEEcc
Q 009856 278 MLFYGPPGTGKTMVAREIAR------KSGLDYAMMTGGDVAP--LGAQAVTKIHEIFDWAKK-------SKKGLLLFIDE 342 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~------~l~~~~~~v~~~~~~~--~~~~~~~~l~~~f~~a~~-------~~~~~vL~iDE 342 (523)
+||.||+|.|||.+|+.|.. .+..+|+.+||..+-. ..+..++++++.|+.+.. +..|++||+||
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlflde 290 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDE 290 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHh
Confidence 99999999999999998853 3477899999988765 334567788888876543 34578999999
Q ss_pred chhhhhhcccccCcHHHHHHHHHHHHHh-----CC---CCCCEEEEEeeCC-------CCCCcHHHhccccceEeecCCC
Q 009856 343 ADAFLCERNSIHMSEAQRSALNALLFRT-----GD---QSRDIVLVLATNR-------PGDLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 343 id~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~---~~~~v~iI~ttn~-------~~~l~~al~~Rf~~~i~~~~p~ 407 (523)
|..+.. ..+..|...+..- ++ -..++-+|+.|-. ...+...+.-|+ ....|.+|.
T Consensus 291 igelga---------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpg 360 (531)
T COG4650 291 IGELGA---------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPG 360 (531)
T ss_pred hhhcCc---------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccc
Confidence 988732 3344444444331 11 1235556665532 134556666777 678899999
Q ss_pred HHHHHHHHHHH----HHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH---HCCCCCHHHHHHHHHHHHH
Q 009856 408 EEERFKLLKLY----LKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR---KTEGFSGREIAKLMASVQA 480 (523)
Q Consensus 408 ~~er~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~---~t~G~sgrdI~~L~~~~~~ 480 (523)
..+|.+=+.-. +.++.. . .+-.+.--++.--..++- --..|+| +.+.|-.++-.
T Consensus 361 l~qr~ediepnldyelerha~-~-----------------~g~~vrfntearra~l~fa~spqa~w~g-nfrelsasvtr 421 (531)
T COG4650 361 LRQRQEDIEPNLDYELERHAS-L-----------------TGDSVRFNTEARRAWLAFATSPQATWRG-NFRELSASVTR 421 (531)
T ss_pred cccCccccCCCccHHHHHHHH-h-----------------hCceeeeehHHHHHHHHhccCcchhhcc-cHHHHhHHHHH
Confidence 88776632221 111111 0 000000011111122221 1122444 88888888888
Q ss_pred HHHcCCCCccCHHHHHHHHHHH
Q 009856 481 AVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 481 a~~~~~~~~it~e~~~~~l~~~ 502 (523)
.+-..+.+.||.+.++.-+...
T Consensus 422 matlad~grit~~~ve~ei~rl 443 (531)
T COG4650 422 MATLADSGRITLDVVEDEINRL 443 (531)
T ss_pred HHHHhcCCceeHHHHHHHHHHH
Confidence 8877788999998888777654
No 252
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.76 E-value=6.7e-07 Score=93.53 Aligned_cols=210 Identities=17% Similarity=0.215 Sum_probs=118.5
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC-c---ccchh
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-V---APLGA 316 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~-~---~~~~~ 316 (523)
.+...+++-.+..-...|......+.. ..++.+.+-+||+||+||||||+++.|++++|..+..-+.+- + .....
T Consensus 77 ~P~t~eeLAVHkkKI~eVk~WL~~~~~-~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~ 155 (634)
T KOG1970|consen 77 KPRTLEELAVHKKKISEVKQWLKQVAE-FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHN 155 (634)
T ss_pred CcccHHHHhhhHHhHHHHHHHHHHHHH-hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccc
Confidence 345567777776666666665553322 222344456999999999999999999999998877654211 0 00100
Q ss_pred h-------HHHHHHH---HHHHHHh-----------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 009856 317 Q-------AVTKIHE---IFDWAKK-----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 375 (523)
Q Consensus 317 ~-------~~~~l~~---~f~~a~~-----------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 375 (523)
+ ....+.. ....+.+ ...+.+|+|||+-..+... .....+.+|..+. .. ..-
T Consensus 156 ~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~--g~~ 228 (634)
T KOG1970|consen 156 ETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SI--GRC 228 (634)
T ss_pred cchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hc--CCC
Confidence 0 1111111 1111111 1134589999996654321 1122333333222 11 222
Q ss_pred CEEEEEee-CCCCCCc------HHHh--ccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhh
Q 009856 376 DIVLVLAT-NRPGDLD------SAIT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 446 (523)
Q Consensus 376 ~v~iI~tt-n~~~~l~------~al~--~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (523)
+++||+|- +.++..+ ..+. -|+ ..|.|.+-...-..+.|..++......... +
T Consensus 229 PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~-----------------~ 290 (634)
T KOG1970|consen 229 PLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSG-----------------I 290 (634)
T ss_pred cEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccC-----------------C
Confidence 35555553 2222222 2222 155 689999999988888888888766541111 0
Q ss_pred hhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 009856 447 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482 (523)
Q Consensus 447 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~ 482 (523)
.--+...++.|+..+.| ||+..++++|..+
T Consensus 291 --k~~~~~~v~~i~~~s~G----DIRsAInsLQlss 320 (634)
T KOG1970|consen 291 --KVPDTAEVELICQGSGG----DIRSAINSLQLSS 320 (634)
T ss_pred --cCchhHHHHHHHHhcCc----cHHHHHhHhhhhc
Confidence 11234567788888878 9999999999885
No 253
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.74 E-value=9.1e-09 Score=105.30 Aligned_cols=244 Identities=18% Similarity=0.164 Sum_probs=129.2
Q ss_pred CCcccCHHHHHHHHHH-HHHHhcchh---cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc--c----h
Q 009856 246 GDIILHPSLQRRIQHL-AKATANTKI---HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--L----G 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~-~~~~~~~~~---~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~--~----~ 315 (523)
..++|.+.++..+.-. +........ .....-|+||+|.||||||.+.+.++...... ++++|..... + .
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceec
Confidence 5688988888776422 111111000 01223489999999999999999887655333 3333322111 0 0
Q ss_pred hhH-HHH---HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----C------CCCCEEEEE
Q 009856 316 AQA-VTK---IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----D------QSRDIVLVL 381 (523)
Q Consensus 316 ~~~-~~~---l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~------~~~~v~iI~ 381 (523)
.+. .+. -.+.+ -...++|++|||+|.+ ....+..|...+..-. . -+..+.|++
T Consensus 103 ~d~~~~~~~leaGal----vlad~GiccIDe~dk~---------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svla 169 (331)
T PF00493_consen 103 RDPVTGEWVLEAGAL----VLADGGICCIDEFDKM---------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLA 169 (331)
T ss_dssp CCGGTSSECEEE-HH----HHCTTSEEEECTTTT-----------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEE
T ss_pred cccccceeEEeCCch----hcccCceeeecccccc---------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHH
Confidence 000 000 01111 2234689999999997 3344555555554311 1 123567899
Q ss_pred eeCCCC-------------CCcHHHhccccceEee-cCCCHHHHHHHHHHHHHhhccCCC-----CCC-----Cchhhhh
Q 009856 382 ATNRPG-------------DLDSAITDRIDEVIEF-PLPREEERFKLLKLYLKKYLCSDE-----GDS-----SSLKWGH 437 (523)
Q Consensus 382 ttn~~~-------------~l~~al~~Rf~~~i~~-~~p~~~er~~il~~~l~~~~~~~~-----~~~-----~~~~~~~ 437 (523)
++|+.. .+++.|++|||.++.+ +.|+.+.-..+..+.+..+..... ... ....+..
T Consensus 170 a~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 249 (331)
T PF00493_consen 170 AANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRK 249 (331)
T ss_dssp EE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHH
T ss_pred HHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHH
Confidence 998754 4778999999988765 666666666677777766543210 000 0000111
Q ss_pred hhhhhhhhhhhccCCHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 438 LFKKQQQKITIKDLSDNVIQEAARKT-------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~la~~t-------------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
.+...+..+ .+.++++..+.|.... ...+.|.|..|+..+++.|...-...++.+|+..|+.-+..
T Consensus 250 yI~yar~~~-~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 250 YIAYARQNI-HPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-ccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 111112122 2357787777775532 12466788999999999999988899999999999987653
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.74 E-value=2.9e-09 Score=99.08 Aligned_cols=110 Identities=28% Similarity=0.374 Sum_probs=55.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhH--HHHHHHHHHHHHhcCCceEEEEccchhhhhh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA--VTKIHEIFDWAKKSKKGLLLFIDEADAFLCE 349 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~--~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 349 (523)
..+++|+||||||||++|.+++..+ |.++.+++.+++....... .+.....+.... ...+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK---RVDLLILDDLGYEP-- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---TSSCEEEETCTSS---
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc---cccEecccccceee--
Confidence 3579999999999999999999876 7788888766543210000 011122222222 34689999997531
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC----------CCCcHHHhccc
Q 009856 350 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP----------GDLDSAITDRI 397 (523)
Q Consensus 350 ~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~----------~~l~~al~~Rf 397 (523)
.+......+..++..-... -.+|+|||.. ..+..++++|+
T Consensus 122 -----~~~~~~~~l~~ii~~R~~~---~~tIiTSN~~~~~l~~~~~d~~~a~aildRl 171 (178)
T PF01695_consen 122 -----LSEWEAELLFEIIDERYER---KPTIITSNLSPSELEEVLGDRALAEAILDRL 171 (178)
T ss_dssp -------HHHHHCTHHHHHHHHHT----EEEEEESS-HHHHHT---------------
T ss_pred -----ecccccccchhhhhHhhcc---cCeEeeCCCchhhHhhccccccccccccccc
Confidence 2333344444454432221 2477799974 13445666665
No 255
>PRK06921 hypothetical protein; Provisional
Probab=98.73 E-value=1.1e-07 Score=94.14 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=62.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchh-hhhh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA-FLCE 349 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~-l~~~ 349 (523)
..+++|+||||||||+|+.+||..+ |..+++++..++..............+ .......+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~---~~~~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKL---NRMKKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHH---HHhcCCCEEEEeccccccCCC
Confidence 4579999999999999999999986 455666655432221111111111111 1223457999999943 1111
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC-C---CCcHHHhcc
Q 009856 350 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-G---DLDSAITDR 396 (523)
Q Consensus 350 ~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~-~---~l~~al~~R 396 (523)
...+......|..++........ .+|+|||.+ . .+++.+.+|
T Consensus 194 ---e~~t~~~~~~lf~iin~R~~~~k--~tIitsn~~~~el~~~~~~l~sR 239 (266)
T PRK06921 194 ---PRATEWQIEQMYSVLNYRYLNHK--PILISSELTIDELLDIDEALGSR 239 (266)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHhhhhhHHHHH
Confidence 11233444455555544322222 367788863 2 234566665
No 256
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.73 E-value=2.3e-07 Score=89.77 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=84.8
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 325 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~ 325 (523)
..+|..|-..+....+..+.... .+-.++||+|||||.+++.+|..+|.+++.++|++-.. ...+..+
T Consensus 10 ~rlv~Tplt~r~~~~l~~al~~~-------~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~-----~~~l~ri 77 (231)
T PF12774_consen 10 PRLVITPLTDRCFLTLTQALSLN-------LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD-----YQSLSRI 77 (231)
T ss_dssp ------HHHHHHHHHHHHHHCTT-------TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS------HHHHHHH
T ss_pred CCceechHHHHHHHHHHHHhccC-------CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc-----HHHHHHH
Confidence 45677777777777666664321 23678999999999999999999999999999987443 2345666
Q ss_pred HHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh----CC-------------CCCCEEEEEeeCCC--
Q 009856 326 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----GD-------------QSRDIVLVLATNRP-- 386 (523)
Q Consensus 326 f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~-------------~~~~v~iI~ttn~~-- 386 (523)
|..+... |+.+++||++.+ +...-.++...+..+ .. -..++.+++|.|..
T Consensus 78 l~G~~~~--GaW~cfdefnrl---------~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~ 146 (231)
T PF12774_consen 78 LKGLAQS--GAWLCFDEFNRL---------SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA 146 (231)
T ss_dssp HHHHHHH--T-EEEEETCCCS---------SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC
T ss_pred HHHHhhc--Cchhhhhhhhhh---------hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC
Confidence 6665543 689999999987 323333333332221 11 11245567777743
Q ss_pred --CCCcHHHhccccceEeecCCCHHHHHHH
Q 009856 387 --GDLDSAITDRIDEVIEFPLPREEERFKL 414 (523)
Q Consensus 387 --~~l~~al~~Rf~~~i~~~~p~~~er~~i 414 (523)
..+++.++.-| ..|.+..||.....++
T Consensus 147 gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 147 GRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp CC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred CcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 46888888888 8889999987755544
No 257
>PF05729 NACHT: NACHT domain
Probab=98.60 E-value=4.2e-07 Score=82.74 Aligned_cols=140 Identities=19% Similarity=0.352 Sum_probs=78.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCC--------Cee-EEecCCcccch-------------hhHHHHHHHHHHHHHhcCC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGL--------DYA-MMTGGDVAPLG-------------AQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~--------~~~-~v~~~~~~~~~-------------~~~~~~l~~~f~~a~~~~~ 334 (523)
-++|+|+||+|||++++.++..+.. ++. .+.+....... ..........+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999987711 222 22222221110 0011111222223334455
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhcccc--ceEeecCCCHHHHH
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRID--EVIEFPLPREEERF 412 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~--~~i~~~~p~~~er~ 412 (523)
..+|+||.+|.+...... .........+..++.. ....++.+|+|+... ... .+.+.+. ..+.+++.+.++..
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPR-AFP-DLRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCC-hHH-HHHHhcCCCcEEEECCCCHHHHH
Confidence 688999999998543221 0011122334444432 124456677777542 221 1443332 46899999999999
Q ss_pred HHHHHHHHh
Q 009856 413 KLLKLYLKK 421 (523)
Q Consensus 413 ~il~~~l~~ 421 (523)
.+++.++..
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999998763
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.59 E-value=4e-07 Score=103.95 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=113.9
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chh----h
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA----Q 317 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~----~ 317 (523)
-+..|..|-+.+.+..++++......+ +||.||+.+|||+++..+|+..|+.|+.++...... +.| +
T Consensus 864 q~hyIiTPfVqkn~ln~~Ra~s~~~fP------~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd 937 (4600)
T COG5271 864 QEHYIITPFVQKNYLNTMRAASLSNFP------LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD 937 (4600)
T ss_pred cceeEecHHHHHHHHHHHHHHhhcCCc------EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec
Confidence 356788888888888877776554443 999999999999999999999999999998655322 111 1
Q ss_pred HHH---HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----------CCCCCEEEEEee
Q 009856 318 AVT---KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----------DQSRDIVLVLAT 383 (523)
Q Consensus 318 ~~~---~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----------~~~~~v~iI~tt 383 (523)
..+ .-.+++-.|. ++|-.|+|||..-. +.....+|+.+|+.-. .+..++++++|-
T Consensus 938 d~G~lsFkEGvLVeAl--R~GyWIVLDELNLA---------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ 1006 (4600)
T COG5271 938 DDGSLSFKEGVLVEAL--RRGYWIVLDELNLA---------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ 1006 (4600)
T ss_pred CCCceeeehhHHHHHH--hcCcEEEeeccccC---------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec
Confidence 111 1123333333 34668999999753 4466778888875321 255688888888
Q ss_pred CCCC------CCcHHHhccccceEeecCCCHHHHHHHHHHHH
Q 009856 384 NRPG------DLDSAITDRIDEVIEFPLPREEERFKLLKLYL 419 (523)
Q Consensus 384 n~~~------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l 419 (523)
|+|. .+..+|++|| ..++|..-+.++...|+...+
T Consensus 1007 Nppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1007 NPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred CCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHHHhccC
Confidence 9875 5789999999 889999999999998887654
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=1.8e-07 Score=92.42 Aligned_cols=99 Identities=22% Similarity=0.373 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-chh-hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGA-QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~~~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~ 350 (523)
.+++|+||||||||+++.+++... |..+.++++.++.. +.. ...+.+...+... ...+.+|+|||++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~--~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG--VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH--hcCCCEEEEcccccCCC--
Confidence 469999999999999999997664 66666666554431 111 0111223333322 23456999999986422
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC
Q 009856 351 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 386 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~ 386 (523)
+......|..++...... . .+|+|||.+
T Consensus 179 -----~~~~~~~lf~li~~r~~~-~--s~iiTsn~~ 206 (259)
T PRK09183 179 -----SQEEANLFFQVIAKRYEK-G--SMILTSNLP 206 (259)
T ss_pred -----ChHHHHHHHHHHHHHHhc-C--cEEEecCCC
Confidence 223334455555432222 2 378888874
No 260
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=4.9e-06 Score=79.52 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=99.7
Q ss_pred CCceEEEEcCCC-CchHHHHHHHHHHhCC--------C-eeEEecCCc-----ccchhhHHHHHHHHHHHHHhcCCceEE
Q 009856 274 PFRNMLFYGPPG-TGKTMVAREIARKSGL--------D-YAMMTGGDV-----APLGAQAVTKIHEIFDWAKKSKKGLLL 338 (523)
Q Consensus 274 p~~~vLL~GppG-tGKT~lA~ala~~l~~--------~-~~~v~~~~~-----~~~~~~~~~~l~~~f~~a~~~~~~~vL 338 (523)
-...+||.|..+ +||..++..++..+-+ | +..+..... ...+.+..+.+...+......++..|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 335699999998 9999999988877622 2 333322110 123444444444444333334456799
Q ss_pred EEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHH
Q 009856 339 FIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLY 418 (523)
Q Consensus 339 ~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~ 418 (523)
+|+++|.| ...+.+.+|..+++++.++++|++|..+..+.|.++||| ..+.|+.|+...-.++...+
T Consensus 94 II~~ae~m------------t~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 94 IIYSAELM------------NLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYSQF 160 (263)
T ss_pred EEechHHh------------CHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHHHh
Confidence 99999986 246788999999999999999999999999999999999 89999999998777777766
Q ss_pred HHh
Q 009856 419 LKK 421 (523)
Q Consensus 419 l~~ 421 (523)
+..
T Consensus 161 ~~p 163 (263)
T PRK06581 161 IQP 163 (263)
T ss_pred ccc
Confidence 543
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=3.8e-07 Score=79.96 Aligned_cols=97 Identities=26% Similarity=0.364 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh--------CCCeeEEecCCccc---c-------------hhhHHHHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS--------GLDYAMMTGGDVAP---L-------------GAQAVTKIHEIFDWAKK 331 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l--------~~~~~~v~~~~~~~---~-------------~~~~~~~l~~~f~~a~~ 331 (523)
+.++|+||||+|||++++.++..+ +.+++.++++.... + .......+...+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 359999999999999999999987 66777776544221 0 00111222222222223
Q ss_pred cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC
Q 009856 332 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR 385 (523)
Q Consensus 332 ~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~ 385 (523)
.....+|+|||+|.+. ....++.+..... ..++.||+++..
T Consensus 85 ~~~~~~lviDe~~~l~-----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH-----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC-----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3333699999999973 1334444443333 555666665543
No 262
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.50 E-value=9.7e-07 Score=91.18 Aligned_cols=246 Identities=14% Similarity=0.106 Sum_probs=134.9
Q ss_pred CCcccCHHHHHHHHHHHHHH-hcchhcCCC---CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKAT-ANTKIHQAP---FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 321 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~-~~~~~~~~p---~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~ 321 (523)
..|+|++.+++.|.-++.-. ......+-. --+|+|.|.||+.||-|.+++.+......+.. |-.-+.+|-. ..-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTT-GrGSSGVGLT-AAV 419 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTT-GRGSSGVGLT-AAV 419 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceec-CCCCCccccc-hhh
Confidence 46889999999887654321 111111111 12799999999999999999988765544432 2111111100 000
Q ss_pred HHHHH-------HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh--C--------CCCCCEEEEEeeC
Q 009856 322 IHEIF-------DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT--G--------DQSRDIVLVLATN 384 (523)
Q Consensus 322 l~~~f-------~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~--~--------~~~~~v~iI~ttn 384 (523)
+++-. ..|.-...++|.+|||+|++. +..+..+..++..- . .-+..+.|++++|
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~---------e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMD---------ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhh---------hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 00000 001112345789999999973 34455555554331 1 1223456778887
Q ss_pred CCC-------------CCcHHHhccccceEe-ecCCCHHHHHHHHHHHHHhhccCCCCCCCchh--hhhhhhhhhh-hhh
Q 009856 385 RPG-------------DLDSAITDRIDEVIE-FPLPREEERFKLLKLYLKKYLCSDEGDSSSLK--WGHLFKKQQQ-KIT 447 (523)
Q Consensus 385 ~~~-------------~l~~al~~Rf~~~i~-~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~ 447 (523)
+.. .|+++|+||||..+- .+.|+.+.=..+.++..--+.....+...+.+ ...+-.-... +..
T Consensus 491 PayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~ 570 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRK 570 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhc
Confidence 643 588999999996544 47788777677777665433322211111110 0000000000 011
Q ss_pred hccCCHHHHHHHHHH----------C--C-CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 448 IKDLSDNVIQEAARK----------T--E-GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 448 ~~~~~~~~l~~la~~----------t--~-G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
-..+++..-+.|... . . -.|+|-|-.++....+.+..+-...+..+|+++++.-.
T Consensus 571 ~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 571 NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 112444444444221 1 1 23778888888877777777777899999999998764
No 263
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.47 E-value=3.3e-07 Score=104.56 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=94.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----chhhHHHHHHHHHHH-----HHhcCCceEEEEccchhh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----LGAQAVTKIHEIFDW-----AKKSKKGLLLFIDEADAF 346 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----~~~~~~~~l~~~f~~-----a~~~~~~~vL~iDEid~l 346 (523)
+++||-|.||+|||+++.++|+..|..++.++.++-.. +|.+.+..-.+-|.| ...++.|..++|||+.-.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 35999999999999999999999999999998765322 111111111111111 223456789999999753
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhC-----------CCCCCEEEEEeeCCCC------CCcHHHhccccceEeecCCCHH
Q 009856 347 LCERNSIHMSEAQRSALNALLFRTG-----------DQSRDIVLVLATNRPG------DLDSAITDRIDEVIEFPLPREE 409 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~ll~~~~-----------~~~~~v~iI~ttn~~~------~l~~al~~Rf~~~i~~~~p~~~ 409 (523)
+......|+..|+.-+ +-..++.|++|-|+.+ .++..|++|| .+|++..++.+
T Consensus 1624 ---------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~d 1693 (4600)
T COG5271 1624 ---------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTD 1693 (4600)
T ss_pred ---------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccc
Confidence 3344455666665532 1245788888877643 6999999999 89999999999
Q ss_pred HHHHHHHHHHHh
Q 009856 410 ERFKLLKLYLKK 421 (523)
Q Consensus 410 er~~il~~~l~~ 421 (523)
+...|+.+.+..
T Consensus 1694 Di~~Ia~~~yp~ 1705 (4600)
T COG5271 1694 DITHIANKMYPQ 1705 (4600)
T ss_pred hHHHHHHhhCCc
Confidence 888888877653
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.46 E-value=2.3e-06 Score=77.43 Aligned_cols=107 Identities=19% Similarity=0.285 Sum_probs=60.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-c-----------------------hhhHHHHHHHHHHHHH
Q 009856 278 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-L-----------------------GAQAVTKIHEIFDWAK 330 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~-----------------------~~~~~~~l~~~f~~a~ 330 (523)
++|+||||+|||+++..++... +.++++++...... . ................
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998877 45555554432111 0 0001111111122223
Q ss_pred hcCCceEEEEccchhhhhhccc--ccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC
Q 009856 331 KSKKGLLLFIDEADAFLCERNS--IHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 386 (523)
Q Consensus 331 ~~~~~~vL~iDEid~l~~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~ 386 (523)
....+.+|+|||+..+...... ..........+..++..... .++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK--GGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc--CCceEEEEEecC
Confidence 3455789999999988654321 12233444556666555432 356666666544
No 265
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.46 E-value=5.4e-07 Score=101.45 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=114.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc--chhhH------HHHHHHHH---HHH-HhcCCceEEEEccchh
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--LGAQA------VTKIHEIF---DWA-KKSKKGLLLFIDEADA 345 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~--~~~~~------~~~l~~~f---~~a-~~~~~~~vL~iDEid~ 345 (523)
++++||||+|||+.+..+|..+|..++..|.++.-+ ..... ...+...| ... .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 699999999999999999999999999999887542 11011 11122222 000 0112235899999998
Q ss_pred hhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccC
Q 009856 346 FLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 425 (523)
Q Consensus 346 l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~ 425 (523)
++. ..+..+..+...+. ....-||++||........-+.+.+..++|+.|+...+..-+..++.....
T Consensus 440 ~~~---------~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~- 507 (871)
T KOG1968|consen 440 MFG---------EDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGI- 507 (871)
T ss_pred ccc---------hhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccce-
Confidence 754 23334444444443 233458888988776666566666689999999999988888777765433
Q ss_pred CCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 009856 426 DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 482 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~ 482 (523)
.+++..++.+...+.| ||++.+..++...
T Consensus 508 ------------------------ki~~~~l~~~s~~~~~----DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 508 ------------------------KISDDVLEEISKLSGG----DIRQIIMQLQFWS 536 (871)
T ss_pred ------------------------ecCcHHHHHHHHhccc----CHHHHHHHHhhhh
Confidence 3788899999999877 9999998777663
No 266
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.45 E-value=2.7e-06 Score=85.20 Aligned_cols=165 Identities=20% Similarity=0.214 Sum_probs=84.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHH--hCCCe---eEEecCCcccch--------------------hhHHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARK--SGLDY---AMMTGGDVAPLG--------------------AQAVTKIHEIFD 327 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~--l~~~~---~~v~~~~~~~~~--------------------~~~~~~l~~~f~ 327 (523)
.+.+.|.|+|++|+|||++|..+++. ....| +.++.+...... .+.......+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34456999999999999999999977 43332 223322211100 011111122222
Q ss_pred HHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCC
Q 009856 328 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 328 ~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~ 407 (523)
.. . ..+++|+||+++.. . .+..+...+.....+..||+||.... +...+... ...+.++..+
T Consensus 97 ~L-~-~~~~LlVlDdv~~~-----------~---~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L~ 158 (287)
T PF00931_consen 97 LL-K-DKRCLLVLDDVWDE-----------E---DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPLS 158 (287)
T ss_dssp HH-C-CTSEEEEEEEE-SH-----------H---HH-------HCHHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS--
T ss_pred hh-c-cccceeeeeeeccc-----------c---cccccccccccccccccccccccccc-cccccccc-cccccccccc
Confidence 22 2 23789999999763 1 22222222212233567888886532 11111111 3688999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 009856 408 EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASV 478 (523)
Q Consensus 408 ~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~ 478 (523)
.++-..++..+...... ... ...++....|+..+.| .|--|.-+...+
T Consensus 159 ~~ea~~L~~~~~~~~~~--~~~--------------------~~~~~~~~~i~~~c~g-lPLal~~~a~~l 206 (287)
T PF00931_consen 159 EEEALELFKKRAGRKES--ESP--------------------EDLEDLAKEIVEKCGG-LPLALKLIASYL 206 (287)
T ss_dssp HHHHHHHHHHHHTSHS--------------------------TTSCTHHHHHHHHTTT--HHHHHHHHHHH
T ss_pred ccccccccccccccccc--ccc--------------------cccccccccccccccc-cccccccccccc
Confidence 99999999988654320 000 1123356788888877 443555554433
No 267
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.32 E-value=1.8e-06 Score=88.99 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=55.7
Q ss_pred cCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-eeEEecCCcccchhhHHHHHHHHH-------HHHHh-cCCceEEEEc
Q 009856 271 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-YAMMTGGDVAPLGAQAVTKIHEIF-------DWAKK-SKKGLLLFID 341 (523)
Q Consensus 271 ~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~-~~~v~~~~~~~~~~~~~~~l~~~f-------~~a~~-~~~~~vL~iD 341 (523)
...+++|++||||+|+|||+|...+...+... -..+. +.....+....++..- ..+.. .....||+||
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~H---Fh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfD 134 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVH---FHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFD 134 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCcccccccc---ccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEe
Confidence 34678999999999999999999998876431 00000 0011111111111111 11111 1123499999
Q ss_pred cchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC
Q 009856 342 EADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 386 (523)
Q Consensus 342 Eid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~ 386 (523)
|++.- +...--.|..|+..+ ...++++|+|||.+
T Consensus 135 EF~V~---------DiaDAmil~rLf~~l--~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 135 EFQVT---------DIADAMILKRLFEAL--FKRGVVLVATSNRP 168 (362)
T ss_pred eeecc---------chhHHHHHHHHHHHH--HHCCCEEEecCCCC
Confidence 99752 112222344444333 24678999999974
No 268
>PHA00729 NTP-binding motif containing protein
Probab=98.31 E-value=1.1e-06 Score=84.14 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+++|+|+||||||++|.+|+..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 269
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.30 E-value=2e-05 Score=81.79 Aligned_cols=248 Identities=17% Similarity=0.185 Sum_probs=133.3
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcC------CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE-ecCCcccch---
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQ------APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM-TGGDVAPLG--- 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~------~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v-~~~~~~~~~--- 315 (523)
..++|+..+++++.=++-. .++... ..--+|||.|.|||.||-|.+-+-+.....++.- .|+....+.
T Consensus 331 PSIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred chhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 4678888888877543321 111110 1112799999999999999998876543222211 011111100
Q ss_pred -hhHHHHHHHHH--HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH--h-----C---CCCCCEEEEEe
Q 009856 316 -AQAVTKIHEIF--DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR--T-----G---DQSRDIVLVLA 382 (523)
Q Consensus 316 -~~~~~~l~~~f--~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~--~-----~---~~~~~v~iI~t 382 (523)
.+... ++.+ ..|.-...|+|++|||||++-. ..+-++...+.. + + .-+..+.|+++
T Consensus 409 ~RD~~t--ReFylEGGAMVLADgGVvCIDEFDKMre---------~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAA 477 (729)
T KOG0481|consen 409 IRDPST--REFYLEGGAMVLADGGVVCIDEFDKMRE---------DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAA 477 (729)
T ss_pred EecCCc--ceEEEecceEEEecCCEEEeehhhccCc---------hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhh
Confidence 00000 0000 0011233578999999999732 334333333321 0 1 12234557777
Q ss_pred eCCCC-------------CCcHHHhccccceEeecCCCHHHHHH-HHHHHHHhhccC----CCC---CCCchhhhhhhhh
Q 009856 383 TNRPG-------------DLDSAITDRIDEVIEFPLPREEERFK-LLKLYLKKYLCS----DEG---DSSSLKWGHLFKK 441 (523)
Q Consensus 383 tn~~~-------------~l~~al~~Rf~~~i~~~~p~~~er~~-il~~~l~~~~~~----~~~---~~~~~~~~~~~~~ 441 (523)
+|.+- ++-+.++||||.++-+..-..+++-. |.++.+.-+... ... ..+..+...+..-
T Consensus 478 ANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~Kry 557 (729)
T KOG0481|consen 478 ANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRY 557 (729)
T ss_pred cCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHH
Confidence 77642 35699999999888776665555543 444444333210 011 1222222112111
Q ss_pred hh-hhhhh-ccCCHHHHHHHHHHC-------------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 442 QQ-QKITI-KDLSDNVIQEAARKT-------------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 442 ~~-~~~~~-~~~~~~~l~~la~~t-------------------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.. ..... ..+++++-+.|..+. --.+.|+|..++...+..+...-....|..|+++++.
T Consensus 558 I~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~R 637 (729)
T KOG0481|consen 558 IQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALR 637 (729)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHH
Confidence 11 11111 246666655554321 1235688999998888888887778899999999999
Q ss_pred HHHHhh
Q 009856 501 YKVEEH 506 (523)
Q Consensus 501 ~~~~~~ 506 (523)
-|..+.
T Consensus 638 LF~vST 643 (729)
T KOG0481|consen 638 LFQVST 643 (729)
T ss_pred HHhHhh
Confidence 987654
No 270
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=3.3e-05 Score=92.02 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=87.1
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe---eEEecCCccc----c
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY---AMMTGGDVAP----L 314 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~---~~v~~~~~~~----~ 314 (523)
...++++||.+...+.+..++.. .....+.+-|+||+|+||||+|++++..+...| +.++...+.. .
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhc
Confidence 34568899988777777665531 122345689999999999999999988774433 2222111100 0
Q ss_pred h------hh-HH----HHHHHHH----------H--HHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 315 G------AQ-AV----TKIHEIF----------D--WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 315 ~------~~-~~----~~l~~~f----------~--~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
. .. .. ..+..++ . ...-..+..+|+||+++.. ..+..+.....
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~~~~~ 319 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALAGQTQ 319 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHHhhCc
Confidence 0 00 00 0000000 0 0111234578999999752 22333332222
Q ss_pred CCCCCEEEEEeeCCCCCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHH
Q 009856 372 DQSRDIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLK 420 (523)
Q Consensus 372 ~~~~~v~iI~ttn~~~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~ 420 (523)
....+..||+||... .+.. .++.++.++.|+.++-..++..+.-
T Consensus 320 ~~~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 320 WFGSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred cCCCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 222345677787653 2332 3567889999999988888887754
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.27 E-value=1.2e-05 Score=71.75 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..++++|+||+||||++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 359999999999999999999887
No 272
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.27 E-value=1e-05 Score=85.67 Aligned_cols=225 Identities=19% Similarity=0.226 Sum_probs=109.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe-cCCcccc----hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhc-
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT-GGDVAPL----GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER- 350 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~-~~~~~~~----~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~- 350 (523)
|+||+|.||||||-+.+.+++...+.++... |+.-..+ -.+....-..+-..|.-....+|.+|||+|++-...
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDR 563 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR 563 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhccccc
Confidence 7999999999999999999988765544331 1110000 000000000000001112235688999999984321
Q ss_pred ccccCcHHHH------HHHHHHHHHhCCCCCCEEEEEeeCCCC-------------CCcHHHhccccceEeec---CCCH
Q 009856 351 NSIHMSEAQR------SALNALLFRTGDQSRDIVLVLATNRPG-------------DLDSAITDRIDEVIEFP---LPRE 408 (523)
Q Consensus 351 ~~~~~~~~~~------~~l~~ll~~~~~~~~~v~iI~ttn~~~-------------~l~~al~~Rf~~~i~~~---~p~~ 408 (523)
.+......++ ..+...| ...+.+|+|+|+.. .+...++||||....+. .|-.
T Consensus 564 tSIHEAMEQQSISISKAGIVtsL------qArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~ 637 (854)
T KOG0477|consen 564 TSIHEAMEQQSISISKAGIVTSL------QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQ 637 (854)
T ss_pred chHHHHHHhcchhhhhhhHHHHH------HhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchh
Confidence 1110000001 1112222 23567889988732 46688999998544332 2333
Q ss_pred HHHHH--HHHHHHHhhccCCC--CC-----CCc---hhhhhhhhh---hhhhhh--hccCCHHHHHHH----HHHC--CC
Q 009856 409 EERFK--LLKLYLKKYLCSDE--GD-----SSS---LKWGHLFKK---QQQKIT--IKDLSDNVIQEA----ARKT--EG 465 (523)
Q Consensus 409 ~er~~--il~~~l~~~~~~~~--~~-----~~~---~~~~~~~~~---~~~~~~--~~~~~~~~l~~l----a~~t--~G 465 (523)
+++.. ++..+......... .. ... ++...+..- .+.++. ....+.+-+..+ -+.+ .|
T Consensus 638 De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tG 717 (854)
T KOG0477|consen 638 DEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATG 717 (854)
T ss_pred HHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccC
Confidence 33332 55556555443200 00 000 000000000 011111 122322222222 1111 12
Q ss_pred ---CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhh
Q 009856 466 ---FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 466 ---~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~ 507 (523)
.+.|-|..++....+.+...-...++.+|+..++.-.+..+.
T Consensus 718 s~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi 762 (854)
T KOG0477|consen 718 SLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSFI 762 (854)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHHH
Confidence 245777777776666666655678899999888887766653
No 273
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.24 E-value=4.9e-05 Score=78.74 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHc-CCCCccCHHHHHHHHHHHHH
Q 009856 456 IQEAARKTEGFSGREIAKLMASVQAAVYA-RPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 456 l~~la~~t~G~sgrdI~~L~~~~~~a~~~-~~~~~it~e~~~~~l~~~~~ 504 (523)
++.......+++.||....-..+-..... -.+..+|.++++.+++..+-
T Consensus 386 ~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale 435 (449)
T TIGR02688 386 VDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALE 435 (449)
T ss_pred hhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 44445556778999988777655544432 45578999999998866554
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.17 E-value=7.4e-06 Score=69.59 Aligned_cols=23 Identities=43% Similarity=0.891 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhC
Q 009856 278 MLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~ 300 (523)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 275
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.17 E-value=3.2e-05 Score=78.01 Aligned_cols=133 Identities=22% Similarity=0.245 Sum_probs=76.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccc---------------------hh--hHHHHHHHHHHH---
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL---------------------GA--QAVTKIHEIFDW--- 328 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~---------------------~~--~~~~~l~~~f~~--- 328 (523)
|.+++|||.+|||||.+.+.+-+.++.+.+.+++-+...+ .+ +....+...|..
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~ 109 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPA 109 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHH
Confidence 4467999999999999999999999999988876542210 01 111122222322
Q ss_pred HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhcc----ccceEeec
Q 009856 329 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDR----IDEVIEFP 404 (523)
Q Consensus 329 a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~R----f~~~i~~~ 404 (523)
+.......+|++|.+|.+. +++...-..+..+...+..+ .+.||+..-... .....+ ...+++||
T Consensus 110 ~t~~d~~~~liLDnad~lr------D~~a~ll~~l~~L~el~~~~--~i~iils~~~~e---~~y~~n~g~~~i~~l~fP 178 (438)
T KOG2543|consen 110 ATNRDQKVFLILDNADALR------DMDAILLQCLFRLYELLNEP--TIVIILSAPSCE---KQYLINTGTLEIVVLHFP 178 (438)
T ss_pred hhccCceEEEEEcCHHhhh------ccchHHHHHHHHHHHHhCCC--ceEEEEeccccH---HHhhcccCCCCceEEecC
Confidence 1112235679999999983 22223223333332222222 344444432211 112221 12688999
Q ss_pred CCCHHHHHHHHHHH
Q 009856 405 LPREEERFKLLKLY 418 (523)
Q Consensus 405 ~p~~~er~~il~~~ 418 (523)
.|+.++...|+.+-
T Consensus 179 ~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 179 QYSVEETQVILSRD 192 (438)
T ss_pred CCCHHHHHHHHhcC
Confidence 99999999987653
No 276
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.17 E-value=0.00019 Score=73.18 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC---------------CCCcHHHhc-c
Q 009856 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP---------------GDLDSAITD-R 396 (523)
Q Consensus 333 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~---------------~~l~~al~~-R 396 (523)
..+.||||||+|++.+ .....++..+ ..+. ...++++|++.+.. +.....++. -
T Consensus 171 ~~~iViiIDdLDR~~~--------~~i~~~l~~i-k~~~-~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP--------EEIVELLEAI-KLLL-DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred CceEEEEEcchhcCCc--------HHHHHHHHHH-HHhc-CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 3467899999999732 2233333332 2222 33788888887642 022344455 4
Q ss_pred ccceEeecCCCHHHHHHHHHHHHHhhcc
Q 009856 397 IDEVIEFPLPREEERFKLLKLYLKKYLC 424 (523)
Q Consensus 397 f~~~i~~~~p~~~er~~il~~~l~~~~~ 424 (523)
|+..+.+|+|+..+...++...+.....
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~~~~ 268 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLESLES 268 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 6778899999999988888888766544
No 277
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.16 E-value=1.6e-05 Score=68.63 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..++|++-+.+.+...+........+..| -.+.|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 67999999999988877766654433333 345689999999999999999986
No 278
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.16 E-value=9.2e-05 Score=86.19 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=102.1
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc--cc--chhh---
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV--AP--LGAQ--- 317 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~--~~--~~~~--- 317 (523)
-.++|--+.+...+.. ....+-++|+||+|.|||+++..++...+ ++..++...- .+ +...
T Consensus 13 ~~~~~~R~rl~~~l~~-----------~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 13 LHNTVVRERLLAKLSG-----------ANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred ccccCcchHHHHHHhc-----------ccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHH
Confidence 3566777776666642 12234599999999999999999987776 6666654211 10 0000
Q ss_pred ------------H------------HHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 009856 318 ------------A------------VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 373 (523)
Q Consensus 318 ------------~------------~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 373 (523)
. ...+..++........+.+|+|||++.+- ++.....+..++.. .
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~---~ 149 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRH---Q 149 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHh---C
Confidence 0 00112222222223567899999999762 22334455555544 3
Q ss_pred CCCEEEEEeeCCCCCCcHHHhccccceEeec----CCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhc
Q 009856 374 SRDIVLVLATNRPGDLDSAITDRIDEVIEFP----LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 449 (523)
Q Consensus 374 ~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~----~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (523)
+.++.+|++|.....+.-.-+..-+..+.+. +.+.++...++...+..
T Consensus 150 ~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~---------------------------- 201 (903)
T PRK04841 150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS---------------------------- 201 (903)
T ss_pred CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC----------------------------
Confidence 5566777777542223211111112234444 66888887777654321
Q ss_pred cCCHHHHHHHHHHCCCCCHHHHHHHH
Q 009856 450 DLSDNVIQEAARKTEGFSGREIAKLM 475 (523)
Q Consensus 450 ~~~~~~l~~la~~t~G~sgrdI~~L~ 475 (523)
.++++.+..|...|.||+. -++.+.
T Consensus 202 ~~~~~~~~~l~~~t~Gwp~-~l~l~~ 226 (903)
T PRK04841 202 PIEAAESSRLCDDVEGWAT-ALQLIA 226 (903)
T ss_pred CCCHHHHHHHHHHhCChHH-HHHHHH
Confidence 3577888999999999765 344333
No 279
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.11 E-value=3.3e-05 Score=76.74 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=94.8
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHH---HhCCCeeEE--ecCCccc---ch--
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR---KSGLDYAMM--TGGDVAP---LG-- 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~---~l~~~~~~v--~~~~~~~---~~-- 315 (523)
-.+.|...-...+..++....- .+...+|++.||.|+|||++....-. ..|-.|+.+ +|.-... +.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~----~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL----HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH----hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHH
Confidence 3456665555666665554332 22335799999999999998765433 456666554 3321110 00
Q ss_pred ---------------hhHHHHHHHHHHHHH---hcCCc-eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 009856 316 ---------------AQAVTKIHEIFDWAK---KSKKG-LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 376 (523)
Q Consensus 316 ---------------~~~~~~l~~~f~~a~---~~~~~-~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 376 (523)
+.....+..+....+ ....+ .|.++||||-+++. .-+-.+..+++.......+
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h--------~rQtllYnlfDisqs~r~P 171 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH--------SRQTLLYNLFDISQSARAP 171 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc--------hhhHHHHHHHHHHhhcCCC
Confidence 001111111211111 11222 45667899988542 3355677777776666778
Q ss_pred EEEEEeeCCCC---CCcHHHhccccce-Eee-cCCCHHHHHHHHHHHH
Q 009856 377 IVLVLATNRPG---DLDSAITDRIDEV-IEF-PLPREEERFKLLKLYL 419 (523)
Q Consensus 377 v~iI~ttn~~~---~l~~al~~Rf~~~-i~~-~~p~~~er~~il~~~l 419 (523)
+.||+.|.+.+ .+...+.|||... |++ |..+..+...+++..+
T Consensus 172 iciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 172 ICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99998775544 5678899999854 554 4445677777777776
No 280
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.10 E-value=6.1e-06 Score=76.71 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=32.9
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC---eeEEecCC
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGD 310 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---~~~v~~~~ 310 (523)
++|-++..+.+...+. . .....+++++|+|+||+|||++++.+...+..+ ++.+++..
T Consensus 2 fvgR~~e~~~l~~~l~-~----~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A----AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G----TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH-H----HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5666666666666553 1 123334679999999999999999988776332 44444433
No 281
>PHA02774 E1; Provisional
Probab=98.10 E-value=2.4e-05 Score=83.79 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=60.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCee-EEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYA-MMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI 353 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~-~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~ 353 (523)
-+.++|+||||||||++|-+|++.++..++ .+|...-. . +..+ ....|++|||+-.-
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F--w----------Lqpl---~d~ki~vlDD~t~~------- 491 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF--W----------LQPL---ADAKIALLDDATHP------- 491 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc--c----------cchh---ccCCEEEEecCcch-------
Confidence 357999999999999999999999864443 34432100 0 1111 12358999999220
Q ss_pred cCcHHHHHHHHHHHHHh----CCC------CCCEEEEEeeCCCCCCc---HHHhccccceEeecCC
Q 009856 354 HMSEAQRSALNALLFRT----GDQ------SRDIVLVLATNRPGDLD---SAITDRIDEVIEFPLP 406 (523)
Q Consensus 354 ~~~~~~~~~l~~ll~~~----~~~------~~~v~iI~ttn~~~~l~---~al~~Rf~~~i~~~~p 406 (523)
........+..+|..- +.. -....+|+|||..-.-+ ..|.+|+ .++.|+.|
T Consensus 492 -~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~ 555 (613)
T PHA02774 492 -CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNP 555 (613)
T ss_pred -HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCC
Confidence 0112222333333211 000 01134788998644334 3455687 67777655
No 282
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.09 E-value=0.00024 Score=70.42 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=94.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 325 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~ 325 (523)
.++|.-+++.+.+.++.+.+.. |.+|.||.|.+||||+++++..|...+..++.+....- +-..+....++.+
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~------~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~-y~~~~f~~dLk~~ 80 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQ------PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG-YSIKDFKEDLKKA 80 (268)
T ss_dssp ------HHHHHHHHHHHHHHCS------TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT-THHHHHHHHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcC------CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC-cCHHHHHHHHHHH
Confidence 6788888888888888776654 34569999999999999999888888888776654331 1122334567777
Q ss_pred HHHHHhcCCceEEEEccch-----------hhhhhccc-ccCc-HHHHHH--------------------HHHHHHHhCC
Q 009856 326 FDWAKKSKKGLLLFIDEAD-----------AFLCERNS-IHMS-EAQRSA--------------------LNALLFRTGD 372 (523)
Q Consensus 326 f~~a~~~~~~~vL~iDEid-----------~l~~~~~~-~~~~-~~~~~~--------------------l~~ll~~~~~ 372 (523)
+..+.-...+.+++|+|-+ .|+....- +.++ +..... +..|+..+
T Consensus 81 ~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rv-- 158 (268)
T PF12780_consen 81 LQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERV-- 158 (268)
T ss_dssp HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHH--
T ss_pred HHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHH--
Confidence 7777666667787777653 22211111 1111 111111 12222222
Q ss_pred CCCCEEEEEeeCCCC-CCc------HHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 373 QSRDIVLVLATNRPG-DLD------SAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~-~l~------~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
..+.-||++.++.. .+. |+|.+++ .+.-|.+.+.+....+...++....
T Consensus 159 -r~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~~ 214 (268)
T PF12780_consen 159 -RKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDIE 214 (268)
T ss_dssp -CCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHHH
T ss_pred -HhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhhc
Confidence 24566666655433 333 6666667 6677777888888888888877643
No 283
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.07 E-value=4.8e-06 Score=78.66 Aligned_cols=122 Identities=22% Similarity=0.287 Sum_probs=60.9
Q ss_pred EEEEcCCCCchHHHHHHH-HHH-h--CCCeeEEecC--Ccccch---hhHHH-------------HHHHHHHHHHhcCCc
Q 009856 278 MLFYGPPGTGKTMVAREI-ARK-S--GLDYAMMTGG--DVAPLG---AQAVT-------------KIHEIFDWAKKSKKG 335 (523)
Q Consensus 278 vLL~GppGtGKT~lA~al-a~~-l--~~~~~~v~~~--~~~~~~---~~~~~-------------~l~~~f~~a~~~~~~ 335 (523)
.+++|.||+|||+.|-.. ... + |++++. |-. ++.... +.... .......|.. ...+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK-LPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT-SGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc-cCCC
Confidence 689999999999988655 332 2 566544 322 111110 00000 0112233322 2358
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCC
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p 406 (523)
++|+|||+..+++.+..... .....+ .++... ...++-||++|..+..+++.+++.++.++.+..+
T Consensus 81 ~liviDEa~~~~~~r~~~~~--~~~~~~-~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGK--KVPEII-EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp -EEEETTGGGTSB---T-T------HHH-HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred cEEEEECChhhcCCCccccc--cchHHH-HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 89999999999988765210 112233 333332 3446789999999999999999888777766544
No 284
>PF14516 AAA_35: AAA-like domain
Probab=98.04 E-value=0.00035 Score=71.68 Aligned_cols=168 Identities=20% Similarity=0.170 Sum_probs=95.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccch---hh-----------------------------HH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG---AQ-----------------------------AV 319 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~---~~-----------------------------~~ 319 (523)
...+.|+||..+|||++...+.+.+ |...+.+++..+.... .+ ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3459999999999999999987766 6666777665533200 00 00
Q ss_pred HHHHHHHHH--HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-----CCCCCEEEEEeeCCCCCCcHH
Q 009856 320 TKIHEIFDW--AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----DQSRDIVLVLATNRPGDLDSA 392 (523)
Q Consensus 320 ~~l~~~f~~--a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~v~iI~ttn~~~~l~~a 392 (523)
......|.. ......+.||+|||+|.++... ....+.+..+-.... .....+++|++......+...
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 011222221 1223467899999999986521 111223322222221 123355566554322222111
Q ss_pred H-hc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 393 I-TD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 393 l-~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
. .| -+...|.++..+.++...+++.+-. .+++..++.|-..|.|.+.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~-----------------------------~~~~~~~~~l~~~tgGhP~- 234 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGL-----------------------------EFSQEQLEQLMDWTGGHPY- 234 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhc-----------------------------cCCHHHHHHHHHHHCCCHH-
Confidence 1 11 3346788899999998888776521 2455568888888888555
Q ss_pred HHHHHHHHH
Q 009856 470 EIAKLMASV 478 (523)
Q Consensus 470 dI~~L~~~~ 478 (523)
=++.+|..+
T Consensus 235 Lv~~~~~~l 243 (331)
T PF14516_consen 235 LVQKACYLL 243 (331)
T ss_pred HHHHHHHHH
Confidence 555555433
No 285
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.01 E-value=2e-05 Score=75.50 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCchHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala 296 (523)
..+||||+||+|||++|+.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 459999999999999999986
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=98.01 E-value=2.8e-05 Score=71.67 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=65.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 356 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~ 356 (523)
.|+|+||||+||||+|+.|+..++.|++.++.--- .++... .++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~---------------------~~~w~~-~~~-------------- 46 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW---------------------KPNWEG-VPK-------------- 46 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc---------------------ccCCcC-CCH--------------
Confidence 59999999999999999999999999886643110 001000 000
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 357 EAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 357 ~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
......+..++. . .+ .|+-.|.+..++. .+.++|.+|.+..|...-...++...+....
T Consensus 47 ~~~~~~~~~~~~----~-~~--wVidG~~~~~~~~-~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g 105 (167)
T PRK08118 47 EEQITVQNELVK----E-DE--WIIDGNYGGTMDI-RLNAADTIIFLDIPRTICLYRAFKRRVQYRG 105 (167)
T ss_pred HHHHHHHHHHhc----C-CC--EEEeCCcchHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHHHHcC
Confidence 011122222221 1 22 5566666555543 3457899999999998888889888887544
No 287
>PHA02624 large T antigen; Provisional
Probab=97.99 E-value=2.7e-05 Score=83.71 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcc---
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN--- 351 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~--- 351 (523)
.+.++|+||||||||+++.+|++.+|...+.++++.-.. +-.+..+. ...+++||++-.-.-...
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks---------~FwL~pl~---D~~~~l~dD~t~~~~~~~~Lp 498 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL---------NFELGCAI---DQFMVVFEDVKGQPADNKDLP 498 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh---------HHHhhhhh---hceEEEeeeccccccccccCC
Confidence 357999999999999999999999966666676543111 10111111 134788899853221100
Q ss_pred -cccCc--HHHHHHHHHH-HHHhCCCCC-CE-----EEEEeeCCCCCCcHHHhccccceEeecC
Q 009856 352 -SIHMS--EAQRSALNAL-LFRTGDQSR-DI-----VLVLATNRPGDLDSAITDRIDEVIEFPL 405 (523)
Q Consensus 352 -~~~~~--~~~~~~l~~l-l~~~~~~~~-~v-----~iI~ttn~~~~l~~al~~Rf~~~i~~~~ 405 (523)
+.+++ ...++.|..- --.++.... .+ .+|+|||. ..++..+.-||..++.|..
T Consensus 499 ~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 499 SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 01111 1222222211 000110011 11 25778876 4678888889988888864
No 288
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=0.00027 Score=74.22 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=75.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 356 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~ 356 (523)
.++|+||.+|||||+++.+...+...++.++..+...........+.... .+... ....+|||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~-~~~~~-~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYI-ELKER-EKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHH-Hhhcc-CCceEEEecccCc----------
Confidence 69999999999999999888887555666666665443333222222222 11111 3468999999874
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEeeCC---CCCCcHHHhccccceEeecCCCHHHHHH
Q 009856 357 EAQRSALNALLFRTGDQSRDIVLVLATNR---PGDLDSAITDRIDEVIEFPLPREEERFK 413 (523)
Q Consensus 357 ~~~~~~l~~ll~~~~~~~~~v~iI~ttn~---~~~l~~al~~Rf~~~i~~~~p~~~er~~ 413 (523)
+.....+..+.+.. ..++ +|.++|. ...+.+.+..|. ..+.+.|.+..|...
T Consensus 107 ~~W~~~lk~l~d~~---~~~v-~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 PDWERALKYLYDRG---NLDV-LITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred hhHHHHHHHHHccc---cceE-EEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 23455566665322 1133 3333333 234556677786 888999999998865
No 289
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.97 E-value=6.5e-06 Score=71.18 Aligned_cols=30 Identities=37% Similarity=0.784 Sum_probs=26.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
|+|.|||||||||+|+.||+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999988876554
No 290
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.96 E-value=6.8e-05 Score=69.95 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 278 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
+||+||||||||+++..++... |.++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7999999999999999887654 566666653
No 291
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.95 E-value=7.7e-05 Score=85.61 Aligned_cols=200 Identities=16% Similarity=0.160 Sum_probs=108.0
Q ss_pred CceEEEEcCCCCchHHH-HHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHh----------cCCceEEEEccc
Q 009856 275 FRNMLFYGPPGTGKTMV-AREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK----------SKKGLLLFIDEA 343 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~l-A~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~----------~~~~~vL~iDEi 343 (523)
.++++++||||+|||++ +-+|-..+-..++.+|.+.-.... .....+..-...... .-...|||.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~-s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeI 1572 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTP-SKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEI 1572 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCH-HHHHHHHhhceeeccCCeEEEccCcchhheEEEeecc
Confidence 35699999999999996 456666666677776654322111 111111111111111 112358999999
Q ss_pred hhhhhhcccccCcHHHHHHHHHHHHHhCC---------CCCCEEEEEeeCCCCCC-----cHHHhccccceEeecCCCHH
Q 009856 344 DAFLCERNSIHMSEAQRSALNALLFRTGD---------QSRDIVLVLATNRPGDL-----DSAITDRIDEVIEFPLPREE 409 (523)
Q Consensus 344 d~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------~~~~v~iI~ttn~~~~l-----~~al~~Rf~~~i~~~~p~~~ 409 (523)
. |.....- . ++..--.+..++..-+. .-.++.++++||++.+. ...|.++- ..++...|+..
T Consensus 1573 n-Lp~~~~y-~-~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~ype~~ 1648 (3164)
T COG5245 1573 N-LPYGFEY-Y-PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCYPELA 1648 (3164)
T ss_pred C-Ccccccc-C-CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecCcchh
Confidence 8 3322211 1 12222233445544332 12378889999987643 45555554 67888999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchhhhhhhhh-hhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcC
Q 009856 410 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK-QQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 485 (523)
Q Consensus 410 er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~ 485 (523)
....|...++....... .++..+... ....++......+.........-||+|||+..++.++..++-..
T Consensus 1649 SL~~Iyea~l~~s~l~~------~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245 1649 SLRNIYEAVLMGSYLCF------DEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAETR 1719 (3164)
T ss_pred hHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhcC
Confidence 99999998887643310 011100000 01111111111122222222335899999999999888777553
No 292
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.91 E-value=0.00047 Score=72.90 Aligned_cols=248 Identities=17% Similarity=0.158 Sum_probs=138.3
Q ss_pred CCcccCHHHHHHHHHHHHH-HhcchhcCCCC---ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchh-----
Q 009856 246 GDIILHPSLQRRIQHLAKA-TANTKIHQAPF---RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA----- 316 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~-~~~~~~~~~p~---~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~----- 316 (523)
..|.|++.+++++.-++.- ......++... -+||+.|.|.|.||-|.+++.+.....+... |-.-+.+|-
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TT-GRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATT-GRGSSGVGLTAAVT 379 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccccccc-CCCCCCccceeEEe
Confidence 4678999999988665432 11112222222 2799999999999999999977642222111 100001110
Q ss_pred -hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEEEeeCC
Q 009856 317 -QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLVLATNR 385 (523)
Q Consensus 317 -~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----------~~~~~v~iI~ttn~ 385 (523)
+...--+.+-..|.-....+|++|||||++ +...+.++..++..-. .-+..+.|++++|+
T Consensus 380 tD~eTGERRLEAGAMVLADRGVVCIDEFDKM---------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLADRGVVCIDEFDKM---------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred eccccchhhhhcCceEEccCceEEehhcccc---------cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCc
Confidence 000000111111112223469999999996 5566777777765411 23446788999987
Q ss_pred CC-------------CCcHHHhccccceEe-ecCCCHHHHHHHHHHHHHhhccCCCC-------CCC----chhhhh---
Q 009856 386 PG-------------DLDSAITDRIDEVIE-FPLPREEERFKLLKLYLKKYLCSDEG-------DSS----SLKWGH--- 437 (523)
Q Consensus 386 ~~-------------~l~~al~~Rf~~~i~-~~~p~~~er~~il~~~l~~~~~~~~~-------~~~----~~~~~~--- 437 (523)
.. .|+..|++|||..+- ++..+...=..|-.+.++-+.-..+. ..+ +++...
T Consensus 451 vyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~ 530 (818)
T KOG0479|consen 451 VYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMED 530 (818)
T ss_pred cccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccc
Confidence 53 478999999986544 44444444444555555433111111 000 000000
Q ss_pred -----hhhh-------------------------h-hhhh-hhccCCHHHHHHHHHHC---------------CCCCHHH
Q 009856 438 -----LFKK-------------------------Q-QQKI-TIKDLSDNVIQEAARKT---------------EGFSGRE 470 (523)
Q Consensus 438 -----~~~~-------------------------~-~~~~-~~~~~~~~~l~~la~~t---------------~G~sgrd 470 (523)
.+.. . ..+. ..+.++++....|+... .-.++|-
T Consensus 531 ~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARt 610 (818)
T KOG0479|consen 531 KKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITART 610 (818)
T ss_pred cccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHH
Confidence 0000 0 1111 12457888888887632 2346788
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 471 IAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
|.-|+..+-+.+..+-...++.+|...+++-..
T Consensus 611 LETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~ 643 (818)
T KOG0479|consen 611 LETLIRLATAHAKARLSKVVEKDDAEAAVNLLR 643 (818)
T ss_pred HHHHHHHHHHHHHhhhcceeehhhHHHHHHHHH
Confidence 999998777777766668888888888877553
No 293
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.88 E-value=0.00014 Score=67.12 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=60.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH--------------------HHHHHHHHHHhcCCce
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT--------------------KIHEIFDWAKKSKKGL 336 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~--------------------~l~~~f~~a~~~~~~~ 336 (523)
.+|+.||||||||++|..++..++.+++++....... .+... .+...+... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~--~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~--~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD--DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD--AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh--HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh--cCCCC
Confidence 4899999999999999999999888877765544321 11111 233333211 23356
Q ss_pred EEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC
Q 009856 337 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR 385 (523)
Q Consensus 337 vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~ 385 (523)
+++||-+..+..+.-...........+..++..+..... .+|+++|.
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~--tvVlVs~E 125 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPA--KIILVTNE 125 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCC--CEEEEEcC
Confidence 899999988865432111002234455556666554333 34555554
No 294
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00014 Score=81.90 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=106.0
Q ss_pred CCCcccC--HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCcc
Q 009856 245 NGDIILH--PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 312 (523)
Q Consensus 245 ~~~vig~--~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~~ 312 (523)
++-++|. +++...+.-+.+... +|-+|.|.||+|||.++.-++... +..++.++.+.+.
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk---------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTK---------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCC---------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 4667775 555544444333211 357999999999999999999886 2334455443322
Q ss_pred ---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC---
Q 009856 313 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP--- 386 (523)
Q Consensus 313 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~--- 386 (523)
..-++....++.+...+....++.||||||++.+.+.....+ ....-..|..++. .+.+.+|+||...
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~~d~~nlLkp~L~-----rg~l~~IGatT~e~Y~ 329 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-AIDAANLLKPLLA-----RGGLWCIGATTLETYR 329 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-HHHHHHhhHHHHh-----cCCeEEEecccHHHHH
Confidence 244566777888887776666788999999999987655422 1222233333432 2338888877421
Q ss_pred --CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 387 --GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 387 --~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
-.-+|+|-+|| ..+.++.|+..+...|+...-..+
T Consensus 330 k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~~ 366 (898)
T KOG1051|consen 330 KCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSERY 366 (898)
T ss_pred HHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhhh
Confidence 24579999999 677888899887777777766553
No 295
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=0.00021 Score=71.80 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..+++|++|||+-|+|||+|...+...+.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 34778999999999999999999887763
No 296
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00065 Score=69.37 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=71.2
Q ss_pred ceEEEEccchhhhh----hccc-ccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC---CCC--------------CCcHH
Q 009856 335 GLLLFIDEADAFLC----ERNS-IHMSEAQRSALNALLFRTGDQSRDIVLVLATN---RPG--------------DLDSA 392 (523)
Q Consensus 335 ~~vL~iDEid~l~~----~~~~-~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn---~~~--------------~l~~a 392 (523)
+.++.||++..++. ++.. ....+..-..+..+...+..+...-.+|++.. .+. .+++.
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 45688999999987 2222 23344445556666666654333224444443 111 12333
Q ss_pred Hhc---cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 393 ITD---RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 393 l~~---Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.++ -| ..|+++.++.+|-..++.+|+...-+. .+ ..+++.+..+--.+ ++.|+
T Consensus 396 gfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~------------------kk----v~~Ee~~kql~fLS-ngNP~ 451 (461)
T KOG3928|consen 396 GFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLL------------------KK----VPGEENIKQLYFLS-NGNPS 451 (461)
T ss_pred chhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHH------------------hh----cCcccchhhhhhhc-CCCHH
Confidence 333 34 568899999999999999999876541 00 12355667776666 45777
Q ss_pred HHHHHHH
Q 009856 470 EIAKLMA 476 (523)
Q Consensus 470 dI~~L~~ 476 (523)
.++.+|.
T Consensus 452 l~~~lca 458 (461)
T KOG3928|consen 452 LMERLCA 458 (461)
T ss_pred HHHHHHH
Confidence 7777764
No 297
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.83 E-value=0.0009 Score=67.92 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcC--CceEEEEccchhhhhhccc-----ccCcHHHHHHHHHHHHHhC--CC-CCCEEE--EEeeC---CC
Q 009856 322 IHEIFDWAKKSK--KGLLLFIDEADAFLCERNS-----IHMSEAQRSALNALLFRTG--DQ-SRDIVL--VLATN---RP 386 (523)
Q Consensus 322 l~~~f~~a~~~~--~~~vL~iDEid~l~~~~~~-----~~~~~~~~~~l~~ll~~~~--~~-~~~v~i--I~ttn---~~ 386 (523)
+..++....... .|.++.||++..++....- .......-.....|+..+. .. .++.++ +.+|. .+
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 344444444333 4778899999999876321 1234445555666665532 22 333333 34332 22
Q ss_pred C--CCcHHHhcccc---------------------ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhh
Q 009856 387 G--DLDSAITDRID---------------------EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 443 (523)
Q Consensus 387 ~--~l~~al~~Rf~---------------------~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 443 (523)
. .++.++..+-. ..|.++.++.+|...+++.|.........
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~---------------- 285 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSR---------------- 285 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccC----------------
Confidence 2 34444443221 27899999999999999999876544110
Q ss_pred hhhhhccCCHHHHHHHHHHCCCCCHHHHHH
Q 009856 444 QKITIKDLSDNVIQEAARKTEGFSGREIAK 473 (523)
Q Consensus 444 ~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 473 (523)
..++...+.+.-.+.| .|+++.+
T Consensus 286 ------~~~~~~~e~~~~~s~G-Np~el~k 308 (309)
T PF10236_consen 286 ------VDEELVLEKLFLSSNG-NPRELEK 308 (309)
T ss_pred ------CCCHHHHHHHHHhcCC-CHHHhcc
Confidence 2455566667766666 6667654
No 298
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.82 E-value=3.4e-05 Score=82.62 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=48.2
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-CCCeeEEec
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTG 308 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-~~~~~~v~~ 308 (523)
-.-|++++|.+.+++++...+........ .....++|.||||+|||+||+.||..+ ..|++.+.+
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 34578999999999998876644333222 233469999999999999999999988 356666544
No 299
>PRK07261 topology modulation protein; Provisional
Probab=97.81 E-value=0.0001 Score=68.14 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=63.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 356 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~ 356 (523)
.|+|+|+||+||||+|+.|+..++.+++.++.-... +.. .+.+ .
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~----------------------~~~---~~~~-----------~ 45 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ----------------------PNW---QERD-----------D 45 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec----------------------ccc---ccCC-----------H
Confidence 389999999999999999999998887655321100 000 0000 0
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 357 EAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 357 ~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
......+..++ . ... +|+-.|....+-+..+.+++.+|.+..|-......++...+...
T Consensus 46 ~~~~~~~~~~~---~--~~~--wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~r 104 (171)
T PRK07261 46 DDMIADISNFL---L--KHD--WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYR 104 (171)
T ss_pred HHHHHHHHHHH---h--CCC--EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 01112222222 1 122 45555554434355566899999999998888888888887643
No 300
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.77 E-value=2.6e-05 Score=71.75 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
++..|+|+||||||||++|+.||..+|.+++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 44579999999999999999999999988874
No 301
>PRK04296 thymidine kinase; Provisional
Probab=97.77 E-value=0.00022 Score=67.20 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
-.+++||||+|||+++..++..+ |..++.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 37899999999999998888766 55555553
No 302
>PTZ00202 tuzin; Provisional
Probab=97.76 E-value=0.0032 Score=65.66 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=47.3
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecC
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 309 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~ 309 (523)
+....+++|.+.....+..++..... ..++-+.|+||+|||||++++.+...++.+.+.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~-----~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT-----AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC-----CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34457899999988888877653221 1224688999999999999999999888776655543
No 303
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.76 E-value=0.00039 Score=68.92 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=82.9
Q ss_pred CCCCEEEEEee--CCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 373 QSRDIVLVLAT--NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 373 ~~~~v~iI~tt--n~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
..+.+++|++| |+.-.++++|+||+ .++.|.+++.++...++++-+........ .. ..
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~----------------~~---~~ 64 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAK----------------HK---FK 64 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCC----------------cC---CC
Confidence 35678888876 66668999999999 99999999999999999998875211000 00 14
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcC-CCC--ccCHHHHHHHHHHH
Q 009856 451 LSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR-PDC--VLDSQLFREVVEYK 502 (523)
Q Consensus 451 ~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~-~~~--~it~e~~~~~l~~~ 502 (523)
++++.++.|+..+.| |.+.+++.++.++... ... .||.+++.+++...
T Consensus 65 i~~~al~~ia~~a~G----DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~ 115 (300)
T PRK14700 65 IDDGLYNAMHNYNEG----DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGET 115 (300)
T ss_pred cCHHHHHHHHHhcCC----HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHH
Confidence 899999999999999 9999999999977532 222 48999999888654
No 304
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.74 E-value=3.5e-05 Score=72.91 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
.++|.||||||||++++.+...+ |..++.+.
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 48889999999999999987766 44555443
No 305
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.73 E-value=0.00041 Score=63.93 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=59.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchh------------------hHHHHHHHHHHHHHhcCCceEEE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA------------------QAVTKIHEIFDWAKKSKKGLLLF 339 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~------------------~~~~~l~~~f~~a~~~~~~~vL~ 339 (523)
+|++|+||+|||++|..++...+.+.+++.......... +....+...+ ...+.+.+|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l---~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSAL---KELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHH---HhcCCCCEEE
Confidence 789999999999999999988777777775443221110 1112223322 2222356899
Q ss_pred EccchhhhhhcccccCc---HHHHHHHHHHHHHhCCCCCCEEEEEeeCC
Q 009856 340 IDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSRDIVLVLATNR 385 (523)
Q Consensus 340 iDEid~l~~~~~~~~~~---~~~~~~l~~ll~~~~~~~~~v~iI~ttn~ 385 (523)
||-+..+..+--..... ......+..++..+.... ..+|+++|.
T Consensus 79 IDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~viVsnE 125 (169)
T cd00544 79 IDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKP--GTLILVSNE 125 (169)
T ss_pred EEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCC--CcEEEEECC
Confidence 99998887654322111 222344555666554333 345566665
No 306
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.72 E-value=0.00015 Score=73.77 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..||++++|||.-|||||+|...+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998876443
No 307
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.72 E-value=2.7e-05 Score=68.50 Aligned_cols=31 Identities=45% Similarity=0.836 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
++||++|.||||||+++..||..+|.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4799999999999999999999999988765
No 308
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.72 E-value=0.00049 Score=67.48 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
...++|+||+|||||++++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346999999999999999999988754
No 309
>PRK08233 hypothetical protein; Provisional
Probab=97.70 E-value=0.00024 Score=65.93 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC-CCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG-LDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~-~~~~~v 306 (523)
-|.|.|+||+||||+|..|+..++ .+++.+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 478899999999999999999985 334433
No 310
>PRK10536 hypothetical protein; Provisional
Probab=97.69 E-value=0.00035 Score=68.12 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.++++||+|||||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999884
No 311
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=0.00023 Score=68.22 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=55.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH-----hCCCee--------------EEecCC-cccchhhHHHHHHHHHHHHHhcCCc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK-----SGLDYA--------------MMTGGD-VAPLGAQAVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~-----l~~~~~--------------~v~~~~-~~~~~~~~~~~l~~~f~~a~~~~~~ 335 (523)
+.++|+||.|+|||++.+.++.. .|..+. .+...+ +....+.....+..+.........+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 56999999999999999999832 233221 111110 1111111222333333333333457
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEeeCCCCCCc
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLATNRPGDLD 390 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~v~iI~ttn~~~~l~ 390 (523)
.+++|||+..-. ........+..++..+... .....+|++|...+.+.
T Consensus 110 slvllDE~~~gt-------d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 110 SLVLIDEFGKGT-------DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred cEEEeccccCCC-------CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 899999997521 1112233444455444222 22346777887655433
No 312
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.68 E-value=0.00011 Score=67.73 Aligned_cols=23 Identities=30% Similarity=0.742 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 313
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.67 E-value=0.00035 Score=66.65 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD 310 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~ 310 (523)
..-++|+||||||||+++..++... |.+.++++...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3468899999999999999988654 56677777754
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00016 Score=74.69 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...++|+||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999764
No 315
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.65 E-value=0.00042 Score=62.92 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=65.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeE---EecCC-cc------------------------cchhhHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAM---MTGGD-VA------------------------PLGAQAVTKIHEI 325 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~---v~~~~-~~------------------------~~~~~~~~~l~~~ 325 (523)
-+.+|+++|+|||++|-.+|-.. |..+.. +.+.. .+ ....+........
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 47899999999999999887664 444444 22310 00 0000111122333
Q ss_pred HHHH---HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEe
Q 009856 326 FDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIE 402 (523)
Q Consensus 326 f~~a---~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~ 402 (523)
+..+ .....+.+|+|||+-....-.- .. ...+++.+...+.+.-+|+|+.. .++.|..+.|.+-+
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gl------i~---~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~AD~VTE 151 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGL------LD---VEEVVDLLKAKPEDLELVLTGRN---APKELIEAADLVTE 151 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCC------CC---HHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCceeee
Confidence 3332 2345678999999976533110 11 22333334445667789999876 66777777766554
Q ss_pred e
Q 009856 403 F 403 (523)
Q Consensus 403 ~ 403 (523)
+
T Consensus 152 m 152 (159)
T cd00561 152 M 152 (159)
T ss_pred c
Confidence 4
No 316
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.63 E-value=0.00044 Score=71.29 Aligned_cols=108 Identities=15% Similarity=0.260 Sum_probs=59.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCC------eeEEecCC---------------cc-cchhhHHHHHH---HHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLD------YAMMTGGD---------------VA-PLGAQAVTKIH---EIFDWAK 330 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~------~~~v~~~~---------------~~-~~~~~~~~~l~---~~f~~a~ 330 (523)
...+|+||||||||+|++.|++..... ++.+.+.. +. ........++. .++..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999877431 22222221 11 11111122222 2222222
Q ss_pred ---hcCCceEEEEccchhhhhhccc----------ccCcHHHHHHHHHHHHHhC--CCCCCEEEEEee
Q 009856 331 ---KSKKGLLLFIDEADAFLCERNS----------IHMSEAQRSALNALLFRTG--DQSRDIVLVLAT 383 (523)
Q Consensus 331 ---~~~~~~vL~iDEid~l~~~~~~----------~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~tt 383 (523)
......+|||||+..+...... ++.++.....+..|+..-+ ...+.+.+|+|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2345679999999988654321 2223333344556665543 235677777774
No 317
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.61 E-value=0.00073 Score=65.51 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=74.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCe--eEEecCCccc-ch-------------hhHHH-HH---HH-HHHHHH-----
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDY--AMMTGGDVAP-LG-------------AQAVT-KI---HE-IFDWAK----- 330 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~--~~v~~~~~~~-~~-------------~~~~~-~l---~~-~f~~a~----- 330 (523)
.+++.|++|||||+++..|...+...| +.+-++.... .. .+... .+ .. +-....
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~~ 94 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQK 94 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 689999999999999999987775432 2222211111 00 01101 01 11 111111
Q ss_pred hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHH
Q 009856 331 KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEE 410 (523)
Q Consensus 331 ~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~e 410 (523)
...+..+|+|||+.. .......+..++. ....-++.+|+++...-.+++.++.-++.++-++ .+..+
T Consensus 95 k~~~~~LiIlDD~~~----------~~~k~~~l~~~~~--~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~~d 161 (241)
T PF04665_consen 95 KNNPRFLIILDDLGD----------KKLKSKILRQFFN--NGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSKRD 161 (241)
T ss_pred CCCCCeEEEEeCCCC----------chhhhHHHHHHHh--cccccceEEEEEeeecccCCHHHhhcceEEEEec-CcHHH
Confidence 012367999999843 1112234555553 2244578899999888899999988777777675 56666
Q ss_pred HHHHHHHH
Q 009856 411 RFKLLKLY 418 (523)
Q Consensus 411 r~~il~~~ 418 (523)
+..|++.+
T Consensus 162 l~~i~~~~ 169 (241)
T PF04665_consen 162 LENIYRNM 169 (241)
T ss_pred HHHHHHhc
Confidence 66555544
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00048 Score=71.75 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+..++|+||+|+||||++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999865
No 319
>PRK05973 replicative DNA helicase; Provisional
Probab=97.59 E-value=0.00061 Score=66.10 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.+...++|.|+||+|||+++-.++... |.++++++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 344568999999999999999887654 666666653
No 320
>PRK13695 putative NTPase; Provisional
Probab=97.58 E-value=0.0011 Score=61.26 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++|+|+||+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987765
No 321
>PRK13947 shikimate kinase; Provisional
Probab=97.57 E-value=7.1e-05 Score=68.95 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=28.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+|+|.|+||||||++++.||+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987543
No 322
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.57 E-value=0.00055 Score=66.14 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 309 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~ 309 (523)
...++|+||||+|||++|..+|... +.+++++++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3458999999999999999998754 6777777765
No 323
>PRK00625 shikimate kinase; Provisional
Probab=97.57 E-value=7e-05 Score=69.36 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=28.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+|+|+|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998764
No 324
>PRK14528 adenylate kinase; Provisional
Probab=97.55 E-value=0.00065 Score=63.71 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=26.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.++|.||||+|||++|+.|+..+|.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999877643
No 325
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.54 E-value=0.0005 Score=69.72 Aligned_cols=75 Identities=25% Similarity=0.302 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------ch----------hhHHHHHHHHHHHHHhcCCc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~~ 335 (523)
.+.+.|+||||||||+||..++... |...++++...... ++ ....................
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 3468899999999999999887554 56666665422110 00 01111222222223344557
Q ss_pred eEEEEccchhhhhh
Q 009856 336 LLLFIDEADAFLCE 349 (523)
Q Consensus 336 ~vL~iDEid~l~~~ 349 (523)
.+|+||-+..+.+.
T Consensus 135 ~lIVIDSvaal~~~ 148 (325)
T cd00983 135 DLIVVDSVAALVPK 148 (325)
T ss_pred CEEEEcchHhhccc
Confidence 89999999998864
No 326
>PRK03839 putative kinase; Provisional
Probab=97.54 E-value=7.2e-05 Score=69.64 Aligned_cols=30 Identities=37% Similarity=0.648 Sum_probs=27.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.|+||+||||+++.||+.++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 389999999999999999999999988754
No 327
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.00054 Score=64.97 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..++|+||+|+||||+.+.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999853
No 328
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00046 Score=64.24 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
-++|+|+||+|||++|+.||+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 489999999999999999999983
No 329
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.50 E-value=0.00019 Score=85.62 Aligned_cols=152 Identities=26% Similarity=0.363 Sum_probs=100.1
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccc---hh--------
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL---GA-------- 316 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~---~~-------- 316 (523)
+|..+.++..+..++.+......+ +||-||.|+|||.++..+|...|..++.++.-....+ .+
T Consensus 419 ~i~T~~vq~~la~~~~a~~~~~~p------illqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g 492 (1856)
T KOG1808|consen 419 YIITPRVQKNLADLARAISSGKFP------ILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNG 492 (1856)
T ss_pred eeccHHHHHHHHHHHHHHhcCCCC------eEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCC
Confidence 777888888888888877665444 9999999999999999999999999998875443221 11
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH---hC--------CCCCCEEEEEeeCC
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR---TG--------DQSRDIVLVLATNR 385 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~---~~--------~~~~~v~iI~ttn~ 385 (523)
+..-.-..+. .....|+.+|+|++... +...-.+|+.++.. +. ....++++++|-|.
T Consensus 493 ~l~freg~LV---~Alr~G~~~vlD~lnla---------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 493 DLVFREGVLV---QALRNGDWIVLDELNLA---------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred CeeeehhHHH---HHHHhCCEEEecccccc---------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 0000001111 12335789999999764 33556677777654 11 13345667777787
Q ss_pred CC------CCcHHHhccccceEeecCCCHHHHHHHHHHH
Q 009856 386 PG------DLDSAITDRIDEVIEFPLPREEERFKLLKLY 418 (523)
Q Consensus 386 ~~------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~ 418 (523)
+. .+..+|++|| ..++|..-+.++...|+.+.
T Consensus 561 ~~~y~grk~lsRa~~~rf-~e~~f~~~~e~e~~~i~~~~ 598 (1856)
T KOG1808|consen 561 PGTYGGRKILSRALRNRF-IELHFDDIGEEELEEILEHR 598 (1856)
T ss_pred ccccchhhhhhhcccccc-hhhhhhhcCchhhhhhhccc
Confidence 74 3557778888 56666666666566655543
No 330
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.50 E-value=0.00092 Score=63.26 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=61.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccc-hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM 355 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~-~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~ 355 (523)
.++|.|+-|+|||++++.|+.. ++. +. +... ..+....+. ...|+.|||++.+.
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~----~~~-d~--~~~~~~kd~~~~l~----------~~~iveldEl~~~~-------- 108 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPE----YFS-DS--INDFDDKDFLEQLQ----------GKWIVELDELDGLS-------- 108 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHH----hcc-Cc--cccCCCcHHHHHHH----------HhHheeHHHHhhcc--------
Confidence 5788999999999999999655 211 11 1111 112111111 13488999999863
Q ss_pred cHHHHHHHHHHHHHhC------------CCCCCEEEEEeeCCCCCCcH-HHhccccceEeecC
Q 009856 356 SEAQRSALNALLFRTG------------DQSRDIVLVLATNRPGDLDS-AITDRIDEVIEFPL 405 (523)
Q Consensus 356 ~~~~~~~l~~ll~~~~------------~~~~~v~iI~ttn~~~~l~~-al~~Rf~~~i~~~~ 405 (523)
......+..++.... ..++..+||+|||..+-|.. .=-+|| .+|.+..
T Consensus 109 -k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 109 -KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred -hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 233455666664321 12346789999999775543 344688 6776665
No 331
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.49 E-value=0.00011 Score=66.34 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=27.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+|+|+|+||+|||++|+.|+..+|.+++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 489999999999999999999999987754
No 332
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00089 Score=60.77 Aligned_cols=104 Identities=24% Similarity=0.318 Sum_probs=58.2
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCC--eeEEecCCcccc---------h----hhHHHHHHHHHHHHHhcCCceE
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAPL---------G----AQAVTKIHEIFDWAKKSKKGLL 337 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~--~~~v~~~~~~~~---------~----~~~~~~l~~~f~~a~~~~~~~v 337 (523)
.+...+.|.||+|+|||+++++|+..+... -+.+++..+... + .+.....+-.+..+... .+.+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~-~~~i 101 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLL-NPDL 101 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhc-CCCE
Confidence 344568999999999999999999876321 233333222110 0 01111111122223233 3679
Q ss_pred EEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 338 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 338 L~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+++||... +++......+..++..+... +..+|++|+..+
T Consensus 102 ~ilDEp~~--------~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~ 141 (157)
T cd00267 102 LLLDEPTS--------GLDPASRERLLELLRELAEE--GRTVIIVTHDPE 141 (157)
T ss_pred EEEeCCCc--------CCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 99999974 33445566666666554332 345677776643
No 333
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.48 E-value=0.00043 Score=71.97 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 252 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
++....+..++..+.. ..+.+++|.||.|||||++.++|...+.
T Consensus 4 ~eQ~~~~~~v~~~~~~-----~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN-----EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHHHc-----cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 3444444445444432 2345799999999999999999988873
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.48 E-value=0.0018 Score=62.96 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
+...++|+||||||||+++..++..+ |.+.++++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34469999999999999986554433 45555554
No 335
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.48 E-value=0.001 Score=60.88 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=58.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCcccch--------------hhHHHHHHHHHHHHHhcCCce
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAPLG--------------AQAVTKIHEIFDWAKKSKKGL 336 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~~~--------------~~~~~~l~~~f~~a~~~~~~~ 336 (523)
.+...+.|.||+|+|||+|.+.|+..... --+.+++.++.... -+.....+-.+..+.. ..|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~-~~p~ 102 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA-RNAR 102 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh-cCCC
Confidence 34456999999999999999999976521 12333332221110 0111112222333333 3467
Q ss_pred EEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 337 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 337 vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+|++||-.. +++...+..+..++..+... +..+|++|+..+
T Consensus 103 illlDEP~~--------~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA--------ALTPAEVERLFKVIRRLRAQ--GVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc--------CCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 999999864 34556666777777665322 345666776533
No 336
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.48 E-value=0.00045 Score=62.31 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=26.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 278 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++|+|+||+|||++|+.|+..+ +.+.+.+++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999998 666666654
No 337
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.47 E-value=0.00051 Score=69.57 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------ch----------hhHHHHHHHHHHHHHhcCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~ 334 (523)
+...++|+||||||||+||..++... |.++++++...... ++ ...................
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33468899999999999998876554 55666665422110 00 0111111222222223445
Q ss_pred ceEEEEccchhhhhh
Q 009856 335 GLLLFIDEADAFLCE 349 (523)
Q Consensus 335 ~~vL~iDEid~l~~~ 349 (523)
..+||||-+..+.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 789999999998764
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.47 E-value=0.0026 Score=70.63 Aligned_cols=119 Identities=22% Similarity=0.360 Sum_probs=74.5
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh--CCCeeEEecCC--ccc-------
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS--GLDYAMMTGGD--VAP------- 313 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l--~~~~~~v~~~~--~~~------- 313 (523)
....|.-|.+...+.. +...+-+||+-|.|.||||++-.++... +..+..+++.+ -.+
T Consensus 18 ~~~~v~R~rL~~~L~~-----------~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRPRLLDRLRR-----------ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccHHHHHHHhc-----------CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHH
Confidence 3556666666555542 3455679999999999999999998633 34444444322 100
Q ss_pred ----------chhhH------------HHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 314 ----------LGAQA------------VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 314 ----------~~~~~------------~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
.+.+. ..-+..+|........|..|||||.+.+. ++.....+..|++.
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~-- 156 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKH-- 156 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHh--
Confidence 11111 11235555555666678999999999762 33455666667654
Q ss_pred CCCCCEEEEEeeCC
Q 009856 372 DQSRDIVLVLATNR 385 (523)
Q Consensus 372 ~~~~~v~iI~ttn~ 385 (523)
.+.++.+|+||..
T Consensus 157 -~P~~l~lvv~SR~ 169 (894)
T COG2909 157 -APENLTLVVTSRS 169 (894)
T ss_pred -CCCCeEEEEEecc
Confidence 4678889998854
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.47 E-value=8e-05 Score=66.21 Aligned_cols=24 Identities=38% Similarity=0.952 Sum_probs=22.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCC
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
|+++|||||||||+|+.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 789999999999999999999883
No 340
>PRK13949 shikimate kinase; Provisional
Probab=97.46 E-value=0.00011 Score=67.92 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=28.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+|+|+||||+|||++++.+|..++.+++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999887653
No 341
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0001 Score=65.97 Aligned_cols=28 Identities=46% Similarity=0.714 Sum_probs=26.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+-+.|||||||||+|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999874
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.46 E-value=0.00089 Score=63.31 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
|+.++|+||+|+||||++-.||..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 3468999999999999999998876
No 343
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0012 Score=68.31 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++.++|.||+|+||||++..||..+ |..+..+++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 4679999999999999999999876 344444443
No 344
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.45 E-value=0.00078 Score=69.98 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--------chh-------hHHHHHHHHHHHHHhcCCc
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------LGA-------QAVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--------~~~-------~~~~~l~~~f~~a~~~~~~ 335 (523)
+...++|+|+||+|||+++..+|..+ +.+++++++.+-.. ++. .....+..++..+... .+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~-~~ 159 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL-KP 159 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc-CC
Confidence 34468999999999999999998765 35677776543111 000 0011233444444333 46
Q ss_pred eEEEEccchhhhhh
Q 009856 336 LLLFIDEADAFLCE 349 (523)
Q Consensus 336 ~vL~iDEid~l~~~ 349 (523)
.+|+||++..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 89999999988643
No 345
>PRK14532 adenylate kinase; Provisional
Probab=97.45 E-value=0.00011 Score=68.91 Aligned_cols=29 Identities=28% Similarity=0.667 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+++|.|||||||||+|+.||+.+|.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48999999999999999999999876653
No 346
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.45 E-value=0.00011 Score=68.44 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
|+|+|||||||||+|+.||..+|.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999999865543
No 347
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.45 E-value=0.0011 Score=59.94 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.-.++|+||+|||||+|.+.+|...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3459999999999999999999865
No 348
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.42 E-value=0.00071 Score=58.68 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
+++|+||||+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999998887766
No 349
>PRK13948 shikimate kinase; Provisional
Probab=97.41 E-value=0.00017 Score=67.28 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.++.+|+|.|++|||||++++.+|..+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45678999999999999999999999999998554
No 350
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.41 E-value=0.0011 Score=62.00 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=67.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe---cC---------------------C-cc---cchhhHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT---GG---------------------D-VA---PLGAQAVTKIHE 324 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~---~~---------------------~-~~---~~~~~~~~~l~~ 324 (523)
..+++||++|.|||+.|-.+|-.. |.++..+. +. . +. ....+.......
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 469999999999999999987664 33332221 11 0 00 000112223344
Q ss_pred HHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceE
Q 009856 325 IFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 401 (523)
Q Consensus 325 ~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i 401 (523)
.+..+.. ...+.+|+|||+-..... +- .. ...++..+...+.++-||+|... .++.|+...|.+-
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~---gl---i~---~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ADlVT 170 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKY---GY---LD---VEEVLEALNARPGMQHVVITGRG---APRELIEAADLVT 170 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHC---CC---cc---HHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCchhe
Confidence 4544433 456789999999765331 01 11 12233334446677789999875 6677877777665
Q ss_pred eec
Q 009856 402 EFP 404 (523)
Q Consensus 402 ~~~ 404 (523)
++.
T Consensus 171 Em~ 173 (191)
T PRK05986 171 EMR 173 (191)
T ss_pred ecc
Confidence 554
No 351
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.40 E-value=0.016 Score=62.47 Aligned_cols=129 Identities=20% Similarity=0.326 Sum_probs=89.2
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHH
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKL 414 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~i 414 (523)
+++++|.|++.++. ++...+.|..+...... ..+.+||++.+ -.+++.|.+-+ .++.||+|+.+++..+
T Consensus 82 ~~~~vl~d~h~~~~-------~~~~~r~l~~l~~~~~~-~~~~~i~~~~~--~~~p~el~~~~-~~~~~~lP~~~ei~~~ 150 (489)
T CHL00195 82 PALFLLKDFNRFLN-------DISISRKLRNLSRILKT-QPKTIIIIASE--LNIPKELKDLI-TVLEFPLPTESEIKKE 150 (489)
T ss_pred CcEEEEecchhhhc-------chHHHHHHHHHHHHHHh-CCCEEEEEcCC--CCCCHHHHhce-eEEeecCcCHHHHHHH
Confidence 67999999999873 22344555555544433 33455555554 25777776655 7889999999999999
Q ss_pred HHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 009856 415 LKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 494 (523)
Q Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~ 494 (523)
+..+...... .+++..++.++..+.|+|..+++.++..+. + ..+.++.++
T Consensus 151 l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~gls~~~~~~~~~~~~--~---~~~~~~~~~ 200 (489)
T CHL00195 151 LTRLIKSLNI-------------------------KIDSELLENLTRACQGLSLERIRRVLSKII--A---TYKTIDENS 200 (489)
T ss_pred HHHHHHhcCC-------------------------CCCHHHHHHHHHHhCCCCHHHHHHHHHHHH--H---HcCCCChhh
Confidence 9877653322 368889999999999999999999987421 1 234577777
Q ss_pred HHHHHHHHHH
Q 009856 495 FREVVEYKVE 504 (523)
Q Consensus 495 ~~~~l~~~~~ 504 (523)
+..+++.+..
T Consensus 201 ~~~i~~~k~q 210 (489)
T CHL00195 201 IPLILEEKKQ 210 (489)
T ss_pred HHHHHHHHHH
Confidence 7666665443
No 352
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.40 E-value=0.0007 Score=67.20 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+++|.||||+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5799999999999999999998873
No 353
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.40 E-value=0.00018 Score=68.11 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+++.||+|||||++|-+.|-.+
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998765
No 354
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.39 E-value=0.00032 Score=71.25 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 252 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+.-.+.+..++...........|...|+|+|+||||||++++.+|..+|.+|+.+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 110 PAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 4445555566555443333345667899999999999999999999999999843
No 355
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.39 E-value=0.001 Score=63.15 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999983
No 356
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.39 E-value=0.00093 Score=59.89 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCC--eeEEecC-CcccchhhHHHHHHH-HHHHHHhcCCceEEEEccchhhhh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGG-DVAPLGAQAVTKIHE-IFDWAKKSKKGLLLFIDEADAFLC 348 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~--~~~v~~~-~~~~~~~~~~~~l~~-~f~~a~~~~~~~vL~iDEid~l~~ 348 (523)
.+...+.|.||+|+|||+|+++++..+... -+.+++. .+..+..-+.+.... .+..+.. ..|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~-~~p~illlDEP~~--- 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLL-ENPNLLLLDEPTN--- 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHh-cCCCEEEEeCCcc---
Confidence 344568999999999999999998875211 1222221 111111011111111 2222322 3467999999864
Q ss_pred hcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 349 ERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 349 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+.+...+..+..++.... ..+|++|+..+
T Consensus 100 -----~LD~~~~~~l~~~l~~~~-----~til~~th~~~ 128 (144)
T cd03221 100 -----HLDLESIEALEEALKEYP-----GTVILVSHDRY 128 (144)
T ss_pred -----CCCHHHHHHHHHHHHHcC-----CEEEEEECCHH
Confidence 334455666666665541 35677776643
No 357
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.38 E-value=0.00064 Score=66.82 Aligned_cols=32 Identities=28% Similarity=0.629 Sum_probs=26.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHh---CCCeeEEecC
Q 009856 278 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 309 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~ 309 (523)
|+|+|+||+||||+|+.++..+ +.+++.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 7899999999999999999987 4566666543
No 358
>PRK06217 hypothetical protein; Validated
Probab=97.38 E-value=0.00017 Score=67.48 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.|+|.|+||+||||+++.|+..+|.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4999999999999999999999999876543
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.37 E-value=0.0013 Score=70.25 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-c-------hh-------hHHHHHHHHHHHHHhcCCc
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-L-------GA-------QAVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~-------~~-------~~~~~l~~~f~~a~~~~~~ 335 (523)
+...++|+||||+|||+|+..++... +.+++++++.+-.. + +. .....+..++...... .+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~-~~ 157 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE-KP 157 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh-CC
Confidence 34468999999999999999998765 56777777644211 0 00 0001233444444333 46
Q ss_pred eEEEEccchhhhhh
Q 009856 336 LLLFIDEADAFLCE 349 (523)
Q Consensus 336 ~vL~iDEid~l~~~ 349 (523)
.+|+||.+..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 79999999988653
No 360
>PRK14531 adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=67.22 Aligned_cols=29 Identities=38% Similarity=0.684 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.++|+||||+||||+++.||..+|.+++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 59999999999999999999999887654
No 361
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0032 Score=58.86 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=59.3
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccc------------eEee
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDE------------VIEF 403 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~------------~i~~ 403 (523)
..++|+++|.+ .....|.+|..++.++.+++||++|..+..+.|.++|||.. .+.+
T Consensus 56 ~k~iI~~a~~l------------~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l 123 (206)
T PRK08485 56 EKIIVIAAPSY------------GIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDL 123 (206)
T ss_pred cEEEEEchHhh------------CHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccccccccccccccc
Confidence 34567899885 35678999999999999999999999999999999999953 4778
Q ss_pred cCCCHHHHHHHHHH
Q 009856 404 PLPREEERFKLLKL 417 (523)
Q Consensus 404 ~~p~~~er~~il~~ 417 (523)
...+..+....+..
T Consensus 124 ~~l~~~~i~~~L~~ 137 (206)
T PRK08485 124 KKLDLKDIYEFLKE 137 (206)
T ss_pred CCCCHHHHHHHHHH
Confidence 88899988888887
No 362
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.36 E-value=0.0013 Score=61.15 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCccc----chhhHHHHHHHHHHHHHhcCCceEEEEccchhhh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP----LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 347 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~----~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~ 347 (523)
+...+.|.||+|+|||||++.|+..... --+.+++..+.. ..-+.....+-.+..+.. ..|.++++||--.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~-~~p~lllLDEPts-- 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALL-RNATFYLFDEPSA-- 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHh-cCCCEEEEECCcc--
Confidence 3445889999999999999999986521 122333322111 001111122222222322 3467999999864
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC
Q 009856 348 CERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 386 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~ 386 (523)
+++...+..+..++..+... .+..+|++|+..
T Consensus 101 ------~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 132 (177)
T cd03222 101 ------YLDIEQRLNAARAIRRLSEE-GKKTALVVEHDL 132 (177)
T ss_pred ------cCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 23445555555555544222 223566666553
No 363
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.36 E-value=0.00017 Score=64.27 Aligned_cols=30 Identities=40% Similarity=0.659 Sum_probs=27.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+.|.|+||||||++|+.|+..+|.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987664
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.36 E-value=0.00016 Score=67.01 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+.++|.|+||+||||+|+.|+..++.+++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 45899999999999999999999887776543
No 365
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.36 E-value=0.002 Score=61.70 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=53.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh-----------------------CCCeeEEecCCcccchhhHHHHHHHHHHHHHhcC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS-----------------------GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSK 333 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l-----------------------~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~ 333 (523)
.|||.|++|+|||+++..|...- |..+..++.+.+.............+........
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 48999999999999999986432 2233344444433322222222333333332222
Q ss_pred --CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEee
Q 009856 334 --KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLAT 383 (523)
Q Consensus 334 --~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~v~iI~tt 383 (523)
+..+||+=.++.+ +......+..+...++.. ..+++||+|-
T Consensus 82 ~g~ha~llVi~~~r~---------t~~~~~~l~~l~~~FG~~~~k~~ivvfT~ 125 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRF---------TEEDREVLELLQEIFGEEIWKHTIVVFTH 125 (212)
T ss_dssp T-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEEEEE
T ss_pred CCCeEEEEEEecCcc---------hHHHHHHHHHHHHHccHHHHhHhhHHhhh
Confidence 2345655344333 556677788887777743 3456666664
No 366
>PRK14530 adenylate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=69.04 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=27.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.||||+||||+++.||..+|.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999877644
No 367
>PF13479 AAA_24: AAA domain
Probab=97.35 E-value=0.00036 Score=66.97 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=42.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE-EecCC--------cccchhhHHHHHHHHHHHHH-hcCCceEEEEccchh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM-MTGGD--------VAPLGAQAVTKIHEIFDWAK-KSKKGLLLFIDEADA 345 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~-v~~~~--------~~~~~~~~~~~l~~~f~~a~-~~~~~~vL~iDEid~ 345 (523)
-.++||||||+|||++|..+ +.|++. +..+. ...+.......+.+.+.++. ...++.+|+||-++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 35999999999999999888 444332 22220 11122234555666665542 335678999998876
Q ss_pred h
Q 009856 346 F 346 (523)
Q Consensus 346 l 346 (523)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 5
No 368
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.34 E-value=0.0013 Score=63.90 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++...++++||||||||+++..++... |.++++++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 334568899999999999999996543 555555543
No 369
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.064 Score=55.13 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHhHHHHHHHHHHh--HHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHHH---HhhhhHHh
Q 009856 46 ARKRLQTDHEAQRRHN--TELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAE---AEGRAHEA 120 (523)
Q Consensus 46 ~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e---~~~~~~~~ 120 (523)
.+-+|++++..++.+. +....+.+|++..||+-- -+.+.+++++++....+++++++++++.| .+.++..+
T Consensus 151 q~arYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~----irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Ae 226 (630)
T KOG0742|consen 151 QRARYQDKLARKRYEDELEAQRRLNEELVRMQEESV----IRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAE 226 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH----HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 4556666665554432 223344556666666643 34567789999999999999999999998 45555555
Q ss_pred hh
Q 009856 121 KL 122 (523)
Q Consensus 121 ~~ 122 (523)
++
T Consensus 227 ae 228 (630)
T KOG0742|consen 227 AE 228 (630)
T ss_pred hh
Confidence 44
No 370
>PRK06762 hypothetical protein; Provisional
Probab=97.33 E-value=0.00023 Score=65.19 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~ 308 (523)
.-++|+|+|||||||+|+.++..++.+++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 358899999999999999999998655655543
No 371
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00016 Score=65.59 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=26.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.++|+|.|||||||+++.|+ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8888887654
No 372
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.32 E-value=0.0016 Score=67.54 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+...++|+||||||||++++.+++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3445699999999999999999999864
No 373
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00019 Score=65.65 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.+++|.|++|+||||+.++||+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998653
No 374
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.0018 Score=62.43 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..++|.||+|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999987
No 375
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.32 E-value=0.01 Score=59.73 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=88.7
Q ss_pred CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCC---CcHHHhc--cccceEeecCCCH
Q 009856 334 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---LDSAITD--RIDEVIEFPLPRE 408 (523)
Q Consensus 334 ~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~---l~~al~~--Rf~~~i~~~~p~~ 408 (523)
+..+++|++++.+... .....++..+...+.++++|+.++..+. +...+.. ++ .++.|+.|+.
T Consensus 46 ~~kliii~~~~~~~~~-----------~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~-~~i~~~~~~~ 113 (302)
T TIGR01128 46 ERRLVELRNPEGKPGA-----------KGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNA-QIVECKTPKE 113 (302)
T ss_pred CCeEEEEECCCCCCCH-----------HHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCe-eEEEecCCCH
Confidence 3468999999876321 1244555555555666777777764332 1112222 55 7889999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCC
Q 009856 409 EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDC 488 (523)
Q Consensus 409 ~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~ 488 (523)
.+...++..++...+. .++++.+..|+..+.| |+..+.+.+.-.+...++.
T Consensus 114 ~~~~~~i~~~~~~~g~-------------------------~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~~~~~ 164 (302)
T TIGR01128 114 QELPRWIQARLKKLGL-------------------------RIDPDAVQLLAELVEG----NLLAIAQELEKLALYAPDG 164 (302)
T ss_pred HHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhhCCCC
Confidence 9999999999988765 5899999999999877 6676666555544433445
Q ss_pred ccCHHHHHHHHHHH
Q 009856 489 VLDSQLFREVVEYK 502 (523)
Q Consensus 489 ~it~e~~~~~l~~~ 502 (523)
.||.+++...+...
T Consensus 165 ~It~e~I~~~~~~~ 178 (302)
T TIGR01128 165 KITLEDVEEAVSDS 178 (302)
T ss_pred CCCHHHHHHHHhhh
Confidence 79999999888754
No 376
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.31 E-value=0.00074 Score=67.65 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh----C-CCeeEEecC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS----G-LDYAMMTGG 309 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l----~-~~~~~v~~~ 309 (523)
+..++|+||+|+||||++..||..+ | ..+..+++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4579999999999999999998876 3 556666553
No 377
>PRK06547 hypothetical protein; Provisional
Probab=97.31 E-value=0.00024 Score=65.75 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.++..|+|+|+||||||++|+.|+..++.+++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 44557889999999999999999999887766543
No 378
>PRK14527 adenylate kinase; Provisional
Probab=97.31 E-value=0.0022 Score=60.31 Aligned_cols=31 Identities=35% Similarity=0.643 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+.-++|+||||+||||+|+.|+..+|.+.+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3459999999999999999999998876553
No 379
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.30 E-value=0.0027 Score=59.43 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 009856 278 MLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~ 297 (523)
++|+||.|+|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 380
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.30 E-value=0.0002 Score=67.17 Aligned_cols=29 Identities=41% Similarity=0.716 Sum_probs=25.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
|+|+||||+|||++|+.||..+|.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999988776543
No 381
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.29 E-value=0.0023 Score=65.86 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
...+|+||||||||++++.+++.+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998773
No 382
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.29 E-value=0.0097 Score=60.85 Aligned_cols=178 Identities=14% Similarity=0.187 Sum_probs=106.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC------CCeeEEecCCcccchhhHHHHHHHHHHHHHh---cCCceEEEEccchhhh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG------LDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFL 347 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~------~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~ 347 (523)
.+||||+-.--....++.+...+. .++..+++.+. ..+..++..+.. .....+|++++++.+.
T Consensus 3 ~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~--------~~~~~~~~~~~t~pff~~~rlVvv~~~~~~~ 74 (326)
T PRK07452 3 IYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA--------DQAIQALNEAMTPPFGSGGRLVWLKNSPLCQ 74 (326)
T ss_pred EEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc--------hHHHHHHHHhcCCCCCCCceEEEEeCchhhc
Confidence 589999988777777777776542 22333333322 123444544322 2245688899886541
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEe-eCCCC---CCcHHHhccccceEeecCC---CHHHHHHHHHHHHH
Q 009856 348 CERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLA-TNRPG---DLDSAITDRIDEVIEFPLP---REEERFKLLKLYLK 420 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~t-tn~~~---~l~~al~~Rf~~~i~~~~p---~~~er~~il~~~l~ 420 (523)
. .+ ......+...+...+.+.++|++ ++.++ .+...+.. +..+..|..| +.++...++...+.
T Consensus 75 ~------~~---~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k-~~~~~~~~~~~~~~~~~l~~~i~~~~~ 144 (326)
T PRK07452 75 G------CS---EELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQK-LAEEKEFSLIPPWDTEGLKQLVERTAQ 144 (326)
T ss_pred c------CC---HHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHH-ceeEEEecCCCcccHHHHHHHHHHHHH
Confidence 1 11 22333444445544455556654 33332 12223333 3356666554 45667778888887
Q ss_pred hhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHc--CCCCccCHHHHHHH
Q 009856 421 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA--RPDCVLDSQLFREV 498 (523)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~--~~~~~it~e~~~~~ 498 (523)
..+. .++++.+..|+..+.| |+..+.+.++-.+.- .++..||.++|+.+
T Consensus 145 ~~g~-------------------------~i~~~a~~~L~~~~g~----dl~~l~~EleKL~ly~~~~~~~It~~~V~~~ 195 (326)
T PRK07452 145 ELGV-------------------------KLTPEAAELLAEAVGN----DSRRLYNELEKLALYAENSTKPISAEEVKAL 195 (326)
T ss_pred HcCC-------------------------CCCHHHHHHHHHHhCc----cHHHHHHHHHHHHHhccCCCCccCHHHHHHH
Confidence 7665 5899999999999877 777777666655433 34568999999998
Q ss_pred HHH
Q 009856 499 VEY 501 (523)
Q Consensus 499 l~~ 501 (523)
+..
T Consensus 196 v~~ 198 (326)
T PRK07452 196 VSN 198 (326)
T ss_pred hcc
Confidence 765
No 383
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.002 Score=68.29 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGG 309 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~ 309 (523)
.+.++|.||+|+||||++..||..+ +..+..+++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3579999999999999999887654 3455656553
No 384
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0011 Score=60.42 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=32.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCc
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 311 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~ 311 (523)
..+..+.|+|.||+||||+|.++...+ |...+.++|..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 334468899999999999999999887 788888887654
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.0039 Score=63.81 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
+..++|+||||+||||++..+|..+ |..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4579999999999999999998776 444444443
No 386
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.28 E-value=0.0017 Score=62.66 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
++...+|++||||||||+++..++... |.+.++++.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 344569999999999999998876433 667666653
No 387
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.27 E-value=0.0023 Score=65.43 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+.-..++|||||+||||+++-.|.+.++..++..
T Consensus 260 PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf 293 (432)
T PF00519_consen 260 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF 293 (432)
T ss_dssp TTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-G
T ss_pred CcccEEEEECCCCCchhHHHHHHHHHhCCEEEEe
Confidence 3345688999999999999999999998776543
No 388
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.27 E-value=0.00073 Score=63.57 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=27.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 311 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~ 311 (523)
-++|+||+|||||.+|-.+|+.+|.|++..+.-.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47899999999999999999999999998875443
No 389
>PRK06696 uridine kinase; Validated
Probab=97.27 E-value=0.00051 Score=66.37 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 311 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~ 311 (523)
+.-|.|.|+||+||||+|+.|+..+ |.+++.++..++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 4468899999999999999999998 667776655544
No 390
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.27 E-value=0.00023 Score=63.99 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
++|+|+||+||||+|+.++..++.+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 789999999999999999999876554
No 391
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.27 E-value=0.0036 Score=61.51 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
.+...|+|.|++|+|||+++.+|...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34457999999999999999999764
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.26 E-value=0.00022 Score=65.22 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
++|.|||||||||+|+.++..++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986554
No 393
>PF13245 AAA_19: Part of AAA domain
Probab=97.26 E-value=0.00048 Score=54.59 Aligned_cols=22 Identities=50% Similarity=0.773 Sum_probs=16.6
Q ss_pred EEEEcCCCCchH-HHHHHHHHHh
Q 009856 278 MLFYGPPGTGKT-MVAREIARKS 299 (523)
Q Consensus 278 vLL~GppGtGKT-~lA~ala~~l 299 (523)
+++.|||||||| +++..++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999 5555555554
No 394
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.25 E-value=0.0031 Score=58.28 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=56.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCccc-------------------ch-------hhHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP-------------------LG-------AQAVTKIHEI 325 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~-------------------~~-------~~~~~~l~~~ 325 (523)
+...+.|.||+|+|||+|.+.|+..... --+.+++.++.. +. -+.....+-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 4446899999999999999999986521 112222211100 00 0011111222
Q ss_pred HHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 326 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 326 f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+..+.. .+|.++++||--. +.+...+..+..++..+... +..+|++|+..+
T Consensus 107 la~al~-~~p~~lllDEPt~--------~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~ 157 (173)
T cd03246 107 LARALY-GNPRILVLDEPNS--------HLDVEGERALNQAIAALKAA--GATRIVIAHRPE 157 (173)
T ss_pred HHHHHh-cCCCEEEEECCcc--------ccCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 222322 3467999999864 33556666676666655322 345777776643
No 395
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.25 E-value=0.002 Score=59.80 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||+|++.|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344569999999999999999999875
No 396
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.24 E-value=0.0003 Score=68.18 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.++|.||||+||||+|+.||+.+|.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 499999999999999999999999877654
No 397
>PLN02200 adenylate kinase family protein
Probab=97.23 E-value=0.00034 Score=68.11 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 311 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~ 311 (523)
+..++|.|||||||||+|+.||..+|.++ ++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 44689999999999999999999988654 555544
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.23 E-value=0.0028 Score=60.14 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCchHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala 296 (523)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 399
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.23 E-value=0.0024 Score=61.50 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---C------CCeeEEecCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---G------LDYAMMTGGD 310 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~------~~~~~v~~~~ 310 (523)
..-+.|+||||+|||+++..+|... + ..++++++..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3468899999999999999998764 2 4556665543
No 400
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.22 E-value=0.002 Score=59.53 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCchHH-HHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTM-VAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~-lA~ala~~l 299 (523)
.++++.||+|||||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 359999999999999 555555544
No 401
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.0031 Score=58.18 Aligned_cols=105 Identities=15% Similarity=0.251 Sum_probs=58.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCccc-------------------chhh------HHHHHHH-
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP-------------------LGAQ------AVTKIHE- 324 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~-------------------~~~~------~~~~l~~- 324 (523)
.+...+.|.||+|+|||+|.+.|+..+.. --+.+++..+.. +... +.+....
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl 105 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRI 105 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHH
Confidence 44556999999999999999999987521 012222211100 0000 0011111
Q ss_pred HHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCC
Q 009856 325 IFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 325 ~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l 389 (523)
.+..+. ...|.+|++||-.. +++......+..++..+.. +..+|++|+..+.+
T Consensus 106 ~la~al-~~~p~llllDEP~~--------gLD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~ 158 (171)
T cd03228 106 AIARAL-LRDPPILILDEATS--------ALDPETEALILEALRALAK---GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHH-hcCCCEEEEECCCc--------CCCHHHHHHHHHHHHHhcC---CCEEEEEecCHHHH
Confidence 122222 23467999999854 3355566677777766532 25677778775543
No 402
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.21 E-value=0.00036 Score=64.24 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=27.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+++|+|+||||||++++.||..+|.+|+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 589999999999999999999999998754
No 403
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.21 E-value=0.003 Score=60.12 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..++|+||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 404
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0018 Score=61.36 Aligned_cols=26 Identities=46% Similarity=0.701 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.||.|||||||||+.+-||+.+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHh
Confidence 34469999999999999999999887
No 405
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.20 E-value=0.00036 Score=69.43 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=56.6
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC---eeEEecCC-c-----
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGD-V----- 311 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~---~~~v~~~~-~----- 311 (523)
...+++++.-.+.....+..++...... .++++|.||+||||||++.++...+... ++.+.... +
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~ 172 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP 172 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc
Confidence 3446777877766666666555543211 2359999999999999999999887433 33332111 1
Q ss_pred --ccchh-hHHHHHHHHHHHHHhcCCceEEEEccchh
Q 009856 312 --APLGA-QAVTKIHEIFDWAKKSKKGLLLFIDEADA 345 (523)
Q Consensus 312 --~~~~~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~ 345 (523)
..+.. .....+..++..+.+.. |.+|+++|+-.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~LR~~-pD~iiigEiR~ 208 (270)
T PF00437_consen 173 NQIQIQTRRDEISYEDLLKSALRQD-PDVIIIGEIRD 208 (270)
T ss_dssp SEEEEEEETTTBSHHHHHHHHTTS---SEEEESCE-S
T ss_pred ceEEEEeecCcccHHHHHHHHhcCC-CCcccccccCC
Confidence 00111 12223455555555544 68999999953
No 406
>PRK04040 adenylate kinase; Provisional
Probab=97.20 E-value=0.00037 Score=65.45 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
+..++|+|+|||||||+++.++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 34689999999999999999999983
No 407
>PRK13946 shikimate kinase; Provisional
Probab=97.20 E-value=0.00032 Score=65.64 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
..|+|.|+||||||++++.||..+|.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 46999999999999999999999999987543
No 408
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.20 E-value=0.0013 Score=61.22 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
|.|+|+||+||||+++.++. +|.+++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~ 28 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID 28 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe
Confidence 78999999999999999998 7776543
No 409
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.19 E-value=0.0012 Score=62.01 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=63.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----chhhHHHHHHHHHHHHHhcCCceE-------EEEccchhh
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----LGAQAVTKIHEIFDWAKKSKKGLL-------LFIDEADAF 346 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----~~~~~~~~l~~~f~~a~~~~~~~v-------L~iDEid~l 346 (523)
|.|+|++|||||++++.++...+.+++ ++..+.. .+......+...|........|.+ +++.+-+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 789999999999999999998666654 4433321 122233344445532111111111 112222221
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHH
Q 009856 347 LCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLK 416 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~ 416 (523)
.. -.....+.....+...+..... .+.++|+.+....+ ..+...|+.++.+..|.......+..
T Consensus 80 ~~--le~ilhP~i~~~i~~~i~~~~~-~~~~vvi~~pll~e---~~~~~~~D~vv~V~~~~~~~~~Rl~~ 143 (188)
T TIGR00152 80 KW--LNNLLHPLIREWMKKLLAQFQS-KLAYVLLDVPLLFE---NKLRSLCDRVIVVDVSPQLQLERLMQ 143 (188)
T ss_pred HH--HHHhhCHHHHHHHHHHHHHhhc-CCCEEEEEchHhhh---CCcHHhCCEEEEEECCHHHHHHHHHH
Confidence 10 0011233333334444433321 22344443332211 23455788889998887665555554
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.19 E-value=0.0028 Score=67.07 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 309 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~ 309 (523)
+|..++|+|+||+||||++..+|..+ |..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 46689999999999999999999877 4555555543
No 411
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.19 E-value=0.0022 Score=54.89 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 009856 278 MLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~ 298 (523)
|+|.|+||+|||+|..+|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 412
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.19 E-value=0.0018 Score=67.12 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 413
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.19 E-value=0.0012 Score=62.41 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=34.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----chhhHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----LGAQAVTKIHEIFD 327 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----~~~~~~~~l~~~f~ 327 (523)
.+.|+|++|+|||++++.++..+|.+++ ++..+.. .+......+...|.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~~~~~~~l~~~fg 55 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPGSPILKAILQRYG 55 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcCchHHHHHHHHhC
Confidence 4889999999999999999998888776 4433321 22333345555553
No 414
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00037 Score=64.80 Aligned_cols=28 Identities=43% Similarity=0.846 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
.|+|.||||+||||+|+.|++.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999665544
No 415
>PRK09354 recA recombinase A; Provisional
Probab=97.18 E-value=0.0024 Score=65.29 Aligned_cols=74 Identities=26% Similarity=0.291 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------ch----------hhHHHHHHHHHHHHHhcCCc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~~ 335 (523)
.+.++|+||||||||+||..++... |...++++...-.. ++ ....................
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 3468899999999999999876543 55666665432110 00 00111122222222334457
Q ss_pred eEEEEccchhhhh
Q 009856 336 LLLFIDEADAFLC 348 (523)
Q Consensus 336 ~vL~iDEid~l~~ 348 (523)
.+|+||-+-.+.+
T Consensus 140 ~lIVIDSvaaL~~ 152 (349)
T PRK09354 140 DLIVVDSVAALVP 152 (349)
T ss_pred CEEEEeChhhhcc
Confidence 7999999999876
No 416
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.00096 Score=63.21 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.++|+||+|+||||++.+++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999988874
No 417
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.17 E-value=0.00041 Score=64.20 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.+|+|.||+|+|||++++.+|..++.+++..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 36999999999999999999999998887554
No 418
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.16 E-value=0.004 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||+|++.|+...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344569999999999999999999865
No 419
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.16 E-value=0.0004 Score=64.81 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
.++|.|||||||||+|+.|+..+|.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4889999999999999999999886654
No 420
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.16 E-value=0.001 Score=60.25 Aligned_cols=35 Identities=29% Similarity=0.611 Sum_probs=29.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 311 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~ 311 (523)
.|.|+|.||+||||+|++|...+ |.+.+.+++..+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 48899999999999999999887 788888877554
No 421
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.15 E-value=0.039 Score=56.59 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=110.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh------CCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 347 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l------~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~ 347 (523)
..+.+||||+-=-=+...++.+...+ ..++..+++.+.. ...+........-..+..+++|++++.+.
T Consensus 16 ~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~------~~~l~~~~~t~~lF~~~klvii~~~~~l~ 89 (340)
T PRK05574 16 LAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD------WDDVLEACQSLPLFSDRKLVELRLPEFLT 89 (340)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC------HHHHHHHhhccCccccCeEEEEECCCCCC
Confidence 44579999976322333334444432 1234444444322 12222211111112345689999998763
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEeeCCCCC---C---cHHHhccccceEeecCCCHHHHHHHHHHHHH
Q 009856 348 CERNSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLATNRPGD---L---DSAITDRIDEVIEFPLPREEERFKLLKLYLK 420 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~v~iI~ttn~~~~---l---~~al~~Rf~~~i~~~~p~~~er~~il~~~l~ 420 (523)
.+ .....+..+...+... ...+++|+.++..+. + -..+..++ .++.++.|+..+....+..++.
T Consensus 90 ~~--------~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~-~~~~~~~~~~~~~~~~i~~~~~ 160 (340)
T PRK05574 90 GA--------KGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKA-VVVEAQPPKEAELPQWIQQRLK 160 (340)
T ss_pred ch--------hHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCc-eEEEcCCCCHHHHHHHHHHHHH
Confidence 21 1223445555444112 224556665554321 2 23343444 7889999999999999999998
Q ss_pred hhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 421 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
..+. .++++.++.|+..+.| |+..+.+.+.-.+...+++.||.+++..++.
T Consensus 161 ~~g~-------------------------~i~~~a~~~L~~~~~~----d~~~l~~El~KL~l~~~~~~It~~~I~~~i~ 211 (340)
T PRK05574 161 QQGL-------------------------QIDAAALQLLAERVEG----NLLALAQELEKLALLYPDGKITLEDVEEAVP 211 (340)
T ss_pred HcCC-------------------------CCCHHHHHHHHHHhCc----hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 8765 5899999999999877 7777777666655433333399999998887
Q ss_pred HHHH
Q 009856 501 YKVE 504 (523)
Q Consensus 501 ~~~~ 504 (523)
....
T Consensus 212 ~~~~ 215 (340)
T PRK05574 212 DSAR 215 (340)
T ss_pred hhhc
Confidence 7543
No 422
>PRK02496 adk adenylate kinase; Provisional
Probab=97.15 E-value=0.0004 Score=64.88 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.++|.||||+|||++|+.|+..+|.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998876643
No 423
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.14 E-value=0.00067 Score=52.64 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHh-CCCeeEE
Q 009856 278 MLFYGPPGTGKTMVAREIARKS-GLDYAMM 306 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l-~~~~~~v 306 (523)
+.|.|+||+|||++++.++..+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999986 2344443
No 424
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.14 E-value=0.0027 Score=67.07 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=40.7
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
..+|+.+...+.....+..++. .|.+-+|++||+|+|||++..++...++.+..
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------RPQGLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 4456777777777777766543 45556999999999999999999999866544
No 425
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.14 E-value=0.0019 Score=59.07 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+..+|+||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999986543
No 426
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.13 E-value=0.0015 Score=70.83 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+|..++||.||||||||++.|+||.-.
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999999864
No 427
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.13 E-value=0.0004 Score=66.44 Aligned_cols=29 Identities=41% Similarity=0.708 Sum_probs=25.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
|+|+||||+||||+|+.||..+|.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998776643
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.13 E-value=0.0051 Score=56.62 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=67.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEE---ecC-Cccc-----------------------chhhHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMM---TGG-DVAP-----------------------LGAQAVTKIHEIF 326 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v---~~~-~~~~-----------------------~~~~~~~~l~~~f 326 (523)
-+.+|+++|.|||+.|-.+|-.. |.+++.+ .+. ...+ ...+........+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 48899999999999999987665 4544322 111 0000 0001112234444
Q ss_pred HHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEee
Q 009856 327 DWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEF 403 (523)
Q Consensus 327 ~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~ 403 (523)
..+.. ...+.+|+|||+-....- +-.+ ...+++.+...+.++-||+|... .++.|....|.+-++
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~---gli~------~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKY---GYLD------VEEVVEALQERPGHQHVIITGRG---CPQDLLELADLVTEM 154 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHC---CCcC------HHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCceeeee
Confidence 44432 456789999999755331 1111 11233334446667789999875 577788777766555
Q ss_pred c
Q 009856 404 P 404 (523)
Q Consensus 404 ~ 404 (523)
.
T Consensus 155 ~ 155 (173)
T TIGR00708 155 R 155 (173)
T ss_pred c
Confidence 4
No 429
>PRK13808 adenylate kinase; Provisional
Probab=97.12 E-value=0.003 Score=64.27 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|+||||+|||++++.|+..+|.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 389999999999999999999998766554
No 430
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.11 E-value=0.0024 Score=63.36 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=53.0
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC---CeeEEecCC------cc--
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGGD------VA-- 312 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~---~~~~v~~~~------~~-- 312 (523)
+++++...+...+.+..++. .+.+.++|.||+|+||||+++++...+.. .++.+..+. +.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~---------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~ 128 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE---------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQV 128 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh---------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEE
Confidence 45566556666666655432 12235999999999999999999877742 233332111 10
Q ss_pred cchhhHHHHHHHHHHHHHhcCCceEEEEccchh
Q 009856 313 PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA 345 (523)
Q Consensus 313 ~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~ 345 (523)
.+...........+..+.+. .|.+|+++|+..
T Consensus 129 ~v~~~~~~~~~~~l~~~lR~-~PD~i~vgEiR~ 160 (264)
T cd01129 129 QVNEKAGLTFARGLRAILRQ-DPDIIMVGEIRD 160 (264)
T ss_pred EeCCcCCcCHHHHHHHHhcc-CCCEEEeccCCC
Confidence 01111111234444444444 478999999953
No 431
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.11 E-value=0.0072 Score=56.09 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.0
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~ 297 (523)
.+..-+.|.||+|+|||||.+++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3445689999999999999999964
No 432
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0082 Score=62.80 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
..++|.||+|+||||++..||..+ |..+..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 458899999999999999999754 344444443
No 433
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.11 E-value=0.00038 Score=60.35 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q 009856 278 MLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l 299 (523)
|+|.|+|||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 434
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.10 E-value=0.0015 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
.|.|+|++||||||+++.++. +|.+++
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i 30 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVI 30 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 489999999999999999998 776654
No 435
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.10 E-value=0.00047 Score=66.15 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|+|+||||+|||++|+.||..+|.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38999999999999999999999876654
No 436
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.0044 Score=58.66 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=29.4
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD 310 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~ 310 (523)
..+..+.|+|+||+||||+++.|+..+ |...+.+++.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 344578999999999999999999977 44556665533
No 437
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.09 E-value=0.064 Score=58.06 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=24.9
Q ss_pred cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 009856 332 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLA 382 (523)
Q Consensus 332 ~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~t 382 (523)
...++||+|||++. -..+.+.|..++..+.....+.-++++
T Consensus 376 LasYSViiiDEAHE----------RTL~TDILfgLvKDIar~RpdLKllIs 416 (902)
T KOG0923|consen 376 LASYSVIIVDEAHE----------RTLHTDILFGLVKDIARFRPDLKLLIS 416 (902)
T ss_pred ccceeEEEeehhhh----------hhhhhhHHHHHHHHHHhhCCcceEEee
Confidence 44589999999986 223445666666655544444444443
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.09 E-value=0.0018 Score=64.13 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++...++|+||||||||++|..++... |.+.++++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 344568999999999999999886643 556666654
No 439
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.0049 Score=59.74 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 310 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~ 310 (523)
..-+.|+||||||||+++..++... +...+++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3458899999999999999998553 24566666544
No 440
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.06 E-value=0.0042 Score=58.60 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||+|.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344569999999999999999999876
No 441
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.04 E-value=0.0047 Score=60.21 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
++...+||+||||||||++|..++... |.+.++++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344579999999999999998765542 55555554
No 442
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.04 E-value=0.0075 Score=55.36 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||+|++.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344569999999999999999999875
No 443
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.04 E-value=0.031 Score=58.58 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=34.4
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
-||.+.....+..-+..+.... ...-++.|+-|+|||++.+.+....
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~-----s~~kfi~G~YGsGKTf~l~~i~~~A 73 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGG-----SSFKFIRGEYGSGKTFFLRLIRERA 73 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCC-----CeEEEEEeCCCCcHHHHHHHHHHHH
Confidence 3788888888777666654322 2247889999999999999886543
No 444
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.01 E-value=0.015 Score=52.69 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=75.4
Q ss_pred EcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHH
Q 009856 281 YGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQR 360 (523)
Q Consensus 281 ~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~ 360 (523)
.+.+||||||++.+|++.+|- +-.+...++..- .....+..+...... ....++|.|=-.... ..+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k--~~~~f~~~~l~~L~~-~~~~vViaDRNNh~~----------reR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK--RKPKFIKAVLELLAK-DTHPVVIADRNNHQK----------RER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC--CHHHHHHHHHHHHhh-CCCCEEEEeCCCchH----------HHH
Confidence 689999999999999999873 333444444322 222333334444322 234588888655432 233
Q ss_pred HHHHHHHHHhC----CCCCCEEEEEeeCCCCCCcHHH--------hcccc--ceEeecCCCHHHHHHHHHHHHHhhcc
Q 009856 361 SALNALLFRTG----DQSRDIVLVLATNRPGDLDSAI--------TDRID--EVIEFPLPREEERFKLLKLYLKKYLC 424 (523)
Q Consensus 361 ~~l~~ll~~~~----~~~~~v~iI~ttn~~~~l~~al--------~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~ 424 (523)
..+...+..+. ....++.+|+-.-..+.-.+.+ +.|=| ..|.....+......|+..|+.++..
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep 148 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEP 148 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCC
Confidence 33333333332 2334777887663333323333 33444 35666666788889999999998754
No 445
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.01 E-value=0.0078 Score=58.03 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
+...++|.|+||+|||+++..++... |.+.++++.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44568999999999999999887543 666666654
No 446
>PLN02674 adenylate kinase
Probab=97.00 E-value=0.0007 Score=66.00 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+...++|.||||+||||+++.||..+|.+++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 34569999999999999999999999866543
No 447
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.99 E-value=0.019 Score=54.24 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+...++|.|+||+|||+|...+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999864
No 448
>PRK13764 ATPase; Provisional
Probab=96.99 E-value=0.0011 Score=72.43 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.++|++|||||||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999998874
No 449
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0066 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||+|++.|+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344569999999999999999999864
No 450
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.99 E-value=0.0012 Score=67.96 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..++|+||+|+||||+.+++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4699999999999999999998774
No 451
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.99 E-value=0.0011 Score=62.23 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..++|.||+|+||||++++++..+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4599999999999999999998763
No 452
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.98 E-value=0.00088 Score=64.81 Aligned_cols=22 Identities=23% Similarity=0.650 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q 009856 278 MLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l 299 (523)
+++.|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 453
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.97 E-value=0.0084 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+.+.+.|.||+|+||||..-.||..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35679999999999999877777665
No 454
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.97 E-value=0.0052 Score=61.05 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
.+...++|.||||+|||+++..++..+ |.++++++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344468999999999999999887664 556666554
No 455
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.96 E-value=0.0052 Score=63.97 Aligned_cols=72 Identities=15% Similarity=0.305 Sum_probs=49.2
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceE--eecCCCHHHHHH
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVI--EFPLPREEERFK 413 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i--~~~~p~~~er~~ 413 (523)
.|+||||++-|+... +......+..+...+ .++.|-|++.|..|.+++..+++-++..| -+..++..+...
T Consensus 257 lVfFfDEAHLLF~da-----~kall~~ieqvvrLI--RSKGVGv~fvTQ~P~DiP~~VL~QLGnrIQHaLRAfTP~DqKa 329 (502)
T PF05872_consen 257 LVFFFDEAHLLFNDA-----PKALLDKIEQVVRLI--RSKGVGVYFVTQNPTDIPDDVLGQLGNRIQHALRAFTPKDQKA 329 (502)
T ss_pred EEEEEechhhhhcCC-----CHHHHHHHHHHHHHh--hccCceEEEEeCCCCCCCHHHHHhhhhHHHHHHhcCCHhHHHH
Confidence 368899999987532 334444455554444 46778899999999999999998666555 445566655554
Q ss_pred H
Q 009856 414 L 414 (523)
Q Consensus 414 i 414 (523)
+
T Consensus 330 v 330 (502)
T PF05872_consen 330 V 330 (502)
T ss_pred H
Confidence 3
No 456
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.95 E-value=0.00055 Score=61.74 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=22.7
Q ss_pred EEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 280 FYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 280 L~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
|.||||+|||++|+.||..+|..++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 68999999999999999999765543
No 457
>PHA00012 I assembly protein
Probab=96.94 E-value=0.0036 Score=62.73 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhc
Q 009856 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD 395 (523)
Q Consensus 333 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~ 395 (523)
+.+++++|||++..++.|..+...+ ..+...+... ...++-||++|..+..+|..++.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p---~~vie~l~~h--Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKER---QPVIDWFLHA--RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCc---HHHHHHHHHh--ccCCceEEEEcCCHHHHhHHHHH
Confidence 4578999999999999888654222 2122222222 34467789999999999988874
No 458
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.94 E-value=0.011 Score=67.13 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999866
No 459
>PRK04182 cytidylate kinase; Provisional
Probab=96.93 E-value=0.0008 Score=62.19 Aligned_cols=29 Identities=48% Similarity=0.702 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|+|.|+||||||++++.||..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999988764
No 460
>PHA00350 putative assembly protein
Probab=96.92 E-value=0.0014 Score=68.13 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=65.0
Q ss_pred EEEEcCCCCchHHHHHH--HHHHh--CCCeeEEecCCcc-c-c---hhh----------------HHHHHHHHHHHHHhc
Q 009856 278 MLFYGPPGTGKTMVARE--IARKS--GLDYAMMTGGDVA-P-L---GAQ----------------AVTKIHEIFDWAKKS 332 (523)
Q Consensus 278 vLL~GppGtGKT~lA~a--la~~l--~~~~~~v~~~~~~-~-~---~~~----------------~~~~l~~~f~~a~~~ 332 (523)
.+++|.||+|||..|-. +-..+ |++++. |...+. . + .++ ........|.|+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~--- 79 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWR--- 79 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccC---
Confidence 68999999999998875 33333 665543 222111 0 0 000 011112222222
Q ss_pred CCceEEEEccchhhhhhcccccC---------------cHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccc
Q 009856 333 KKGLLLFIDEADAFLCERNSIHM---------------SEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRI 397 (523)
Q Consensus 333 ~~~~vL~iDEid~l~~~~~~~~~---------------~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf 397 (523)
..+++|||||+..+++.+....+ .......+..| ... ...++=||++|..+..++..++..+
T Consensus 80 p~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l-~~H--RH~G~DIiliTQ~~~~Id~~iR~lv 156 (399)
T PHA00350 80 PRGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAF-MRH--RHYNWDIILLTPNIRKIHSDIRAMI 156 (399)
T ss_pred CCCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHH-HHh--cccCceEEEEeCCHHHhhHHHHHhh
Confidence 36789999999999987644111 00112223333 222 2345668899999999999998876
Q ss_pred cc
Q 009856 398 DE 399 (523)
Q Consensus 398 ~~ 399 (523)
..
T Consensus 157 E~ 158 (399)
T PHA00350 157 EM 158 (399)
T ss_pred hh
Confidence 54
No 461
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.92 E-value=0.001 Score=67.54 Aligned_cols=68 Identities=13% Similarity=0.259 Sum_probs=41.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC-----CCeeEEec-CCcc-------cchhhHHHHHHHHHHHHHhcCCceEEEEcc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTG-GDVA-------PLGAQAVTKIHEIFDWAKKSKKGLLLFIDE 342 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~-----~~~~~v~~-~~~~-------~~~~~~~~~l~~~f~~a~~~~~~~vL~iDE 342 (523)
.++||+|++|+||||++++|+..+. ..++.+.. .++. .+.....-....++..+.+.. |..|++.|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~-PD~IivGE 223 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR-PDRIIVGE 223 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCC-CCEEEEee
Confidence 3699999999999999999998762 22333221 1110 111111123455555555554 68999999
Q ss_pred ch
Q 009856 343 AD 344 (523)
Q Consensus 343 id 344 (523)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 94
No 462
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.92 E-value=0.018 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
-.+|+||.|+|||.+..+|+-.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999997665
No 463
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.91 E-value=0.015 Score=58.39 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHH
Q 009856 252 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+.....|..++..+.... .....|+|.|.+|+|||+++..|...
T Consensus 18 ~~tq~~l~~~l~~l~~~~---~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 18 PATQTKLLELLGKLKEED---VSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred HHHHHHHHHHHHhccccc---ccceEEEEECCCCCCHHHHHHHHhCC
Confidence 344455555555444332 23346999999999999999998753
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.91 E-value=0.0015 Score=57.48 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
...++|.|+.|+|||++++.+++.+|.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3468999999999999999999999864
No 465
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.91 E-value=0.001 Score=68.59 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=37.7
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..++++.-+.+.++++|..-. .++|+.||||.||||+|+++|.++
T Consensus 243 k~~ledY~L~dkl~eRL~era-------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEERA-------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhhh-------------cceEEecCCCCChhHHHHHHHHHH
Confidence 456778888888888886532 369999999999999999999987
No 466
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.90 E-value=0.004 Score=59.17 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
|+|+.|+||+|||++++.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 79999999999999999887765
No 467
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.90 E-value=0.0044 Score=55.13 Aligned_cols=22 Identities=32% Similarity=0.776 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
+.++|.||+|+|||+|+++|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999865
No 468
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.90 E-value=0.007 Score=58.93 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
.+...++|.|+||+|||+++..++... |.++++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344468999999999999999887654 677777663
No 469
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.90 E-value=0.0037 Score=63.33 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=76.3
Q ss_pred CCccc-CHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC-cccchhhHHHHHH
Q 009856 246 GDIIL-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIH 323 (523)
Q Consensus 246 ~~vig-~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~-~~~~~~~~~~~l~ 323 (523)
.++.+ .+++...+..++...-.+. .....-++|+|+.|+|||++...|...+|...+.+..+. +.....
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~--~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~------- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGN--YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE------- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCC--CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC-------
Confidence 33443 4456666666655543332 223346889999999999999999988876543322211 111110
Q ss_pred HHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH--h-----CC----CCCCEEEEEeeCCCCCC---
Q 009856 324 EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR--T-----GD----QSRDIVLVLATNRPGDL--- 389 (523)
Q Consensus 324 ~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~--~-----~~----~~~~v~iI~ttn~~~~l--- 389 (523)
.-|..+.... ..+++.||++.-. ......|..+... + .. ......+|++||..-.+
T Consensus 119 ~~f~~a~l~g-k~l~~~~E~~~~~---------~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~ 188 (304)
T TIGR01613 119 HRFGLARLEG-KRAVIGDEVQKGY---------RDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGF 188 (304)
T ss_pred CCchhhhhcC-CEEEEecCCCCCc---------cccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCC
Confidence 0133332222 3578889986410 0112334444321 0 00 11245688889875444
Q ss_pred cHHHhccccceEeec
Q 009856 390 DSAITDRIDEVIEFP 404 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~ 404 (523)
+.++.+|+ .+|.|+
T Consensus 189 ~~a~~RR~-~vi~f~ 202 (304)
T TIGR01613 189 DGGIKRRL-RIIPFT 202 (304)
T ss_pred ChhheeeE-EEEecc
Confidence 57899998 677765
No 470
>PRK01184 hypothetical protein; Provisional
Probab=96.89 E-value=0.00085 Score=62.61 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|+||||+||||+++ +++.+|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999997 788888777543
No 471
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.88 E-value=0.0085 Score=57.44 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 309 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~ 309 (523)
...++|+||||||||+++..+|... |.++++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3458899999999999999998765 5667777653
No 472
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.88 E-value=0.00091 Score=61.30 Aligned_cols=28 Identities=43% Similarity=0.680 Sum_probs=25.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
|.|+|+||+|||++|+.+++.+|.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999988653
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.016 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+...+.|.||+|+|||||++.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4446899999999999999999963
No 474
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.88 E-value=0.0049 Score=61.21 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=41.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcc-----cchhhHHHHH----HHHHHHHHhcCCceEEEEccch
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA-----PLGAQAVTKI----HEIFDWAKKSKKGLLLFIDEAD 344 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~-----~~~~~~~~~l----~~~f~~a~~~~~~~vL~iDEid 344 (523)
-|+|+|.||+|||++|+.|+..+ +..+..++...+. .......... ...+..+. ....||++|+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l--s~~~iVI~Dd~n 80 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL--SKDTIVILDDNN 80 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH--TT-SEEEE-S--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh--ccCeEEEEeCCc
Confidence 38999999999999999999886 4566666532222 1112222333 33333322 234689999997
Q ss_pred hhhhhcccccCcHHHHHHHHHHHHHh
Q 009856 345 AFLCERNSIHMSEAQRSALNALLFRT 370 (523)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~l~~ll~~~ 370 (523)
.+ ...+.-|..+-...
T Consensus 81 Yi----------Kg~RYelyclAr~~ 96 (270)
T PF08433_consen 81 YI----------KGMRYELYCLARAY 96 (270)
T ss_dssp -S----------HHHHHHHHHHHHHT
T ss_pred hH----------HHHHHHHHHHHHHc
Confidence 64 23455555555443
No 475
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.87 E-value=0.01 Score=57.84 Aligned_cols=101 Identities=19% Similarity=0.216 Sum_probs=51.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh-----CCC--------------eeEEecCC-ccc---chhhHHHHHHHHHHHHHhc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS-----GLD--------------YAMMTGGD-VAP---LGAQAVTKIHEIFDWAKKS 332 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l-----~~~--------------~~~v~~~~-~~~---~~~~~~~~l~~~f~~a~~~ 332 (523)
+.++|+||..+|||++.+.++-.. |.+ |..+...+ +.. ........+..++..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~--- 120 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNA--- 120 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH----
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhc---
Confidence 468999999999999999997653 422 11221211 111 1112233445555433
Q ss_pred CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 333 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 333 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
...++|+|||+..= ..+.........++..+... .+..+|++|+..+
T Consensus 121 ~~~sLvliDE~g~g-------T~~~eg~ai~~aile~l~~~-~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 121 TEKSLVLIDELGRG-------TNPEEGIAIAIAILEYLLEK-SGCFVIIATHFHE 167 (235)
T ss_dssp -TTEEEEEESTTTT-------SSHHHHHHHHHHHHHHHHHT-TT-EEEEEES-GG
T ss_pred ccceeeecccccCC-------CChhHHHHHHHHHHHHHHHh-ccccEEEEeccch
Confidence 34689999999752 11222223333333333221 2446788887754
No 476
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.87 E-value=0.0018 Score=73.14 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++|+|+||||||++++++...+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997765
No 477
>PRK14526 adenylate kinase; Provisional
Probab=96.86 E-value=0.001 Score=63.60 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
.++|+|||||||||+++.||..++.+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4889999999999999999999876654
No 478
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.86 E-value=0.0085 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
.-++|+||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999964
No 479
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=96.86 E-value=0.087 Score=54.27 Aligned_cols=178 Identities=17% Similarity=0.152 Sum_probs=108.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCC------CeeEEecCCcccchhhHHHHHHHHHHHHHhc---CCceEEEEccchhh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGL------DYAMMTGGDVAPLGAQAVTKIHEIFDWAKKS---KKGLLLFIDEADAF 346 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~------~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~---~~~~vL~iDEid~l 346 (523)
+.+||||+-.-.....++.+.+.+.. ++..+++.+ .......+++.+... .+..+|++.+.+.
T Consensus 21 ~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e-------~~~~~~~~~~~~~t~slF~~~rlViv~~~~~- 92 (343)
T PRK06585 21 RAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDD-------LDADPARLEDEANAISLFGGRRLIWVRAGSK- 92 (343)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHH-------hhcCHHHHHHHHhCCCCCCCceEEEEECCch-
Confidence 56999999998888888888776521 222222211 111133444444332 3456888885432
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC---CCcHHHh-ccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 347 LCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---DLDSAIT-DRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---~l~~al~-~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
.....|..++ ...+...++|+.+...+ .+...+. ......+.+.+|+..+...++..++...
T Consensus 93 -----------~~~~~L~~~l---~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~ 158 (343)
T PRK06585 93 -----------NLAAALKALL---ESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEA 158 (343)
T ss_pred -----------hHHHHHHHHH---cCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHC
Confidence 1122344444 33344455555543322 1112221 1223567888899999999999999887
Q ss_pred ccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HcCCCCccCHHHHHHHHHH
Q 009856 423 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV-YARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~-~~~~~~~it~e~~~~~l~~ 501 (523)
+. .++++.+..|+..+.| |+..+.+.+.-.+ |..++..||.++|..++..
T Consensus 159 g~-------------------------~i~~~a~~~L~~~~g~----dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 159 GL-------------------------RITPDARALLVALLGG----DRLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred CC-------------------------CCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 66 5899999999999987 6677776555544 4344568999999988766
Q ss_pred HHH
Q 009856 502 KVE 504 (523)
Q Consensus 502 ~~~ 504 (523)
...
T Consensus 210 ~~e 212 (343)
T PRK06585 210 ASA 212 (343)
T ss_pred ccc
Confidence 543
No 480
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0051 Score=65.95 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.|+||+|+||||++..|+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998754
No 481
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0097 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999998764
No 482
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.86 E-value=0.0072 Score=56.99 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
+|+|.|.||+|||+++.+|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 5899999999999999999754
No 483
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.85 E-value=0.0049 Score=57.48 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCc
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 311 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~ 311 (523)
.++.-+.|.|+||+|||++++.|+..+ |...+.+++..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 445568999999999999999999887 344566665443
No 484
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.84 E-value=0.0011 Score=66.81 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=42.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC-----CCeeEEecC--------Ccccc-hhhHHHHHHHHHHHHHhcCCceEEEEc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTGG--------DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFID 341 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~-----~~~~~v~~~--------~~~~~-~~~~~~~l~~~f~~a~~~~~~~vL~iD 341 (523)
++++|+||+|+||||++++++..+. ..++.+... ....+ .......+..++..+.+.. |..|++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~-pD~iivG 211 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLR-PDRIIVG 211 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCC-CCEEEEe
Confidence 4699999999999999999998862 223332211 10001 0111114555666665555 6899999
Q ss_pred cch
Q 009856 342 EAD 344 (523)
Q Consensus 342 Eid 344 (523)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 994
No 485
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.83 E-value=0.0008 Score=61.49 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
|.|+|+||||||||++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77755
No 486
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.82 E-value=0.011 Score=56.83 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...++|+||.|.|||++.+.++-.
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHH
Confidence 346899999999999999988764
No 487
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.81 E-value=0.016 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||++.|+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999999875
No 488
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.81 E-value=0.016 Score=67.72 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=51.9
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC--CCcHHHhccccceEeecCCCHHHHHH
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--DLDSAITDRIDEVIEFPLPREEERFK 413 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~--~l~~al~~Rf~~~i~~~~p~~~er~~ 413 (523)
.||+|||+..|.... .......+..+.+. ....+|.+|++|.+++ .+...+++-|...|-|..-+..+-..
T Consensus 1142 IVVIIDE~AdLm~~~-----~kevE~lI~rLAqk--GRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrt 1214 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-----GKKVEELIARLAQK--ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 1214 (1355)
T ss_pred EEEEEcChHHHHhhh-----hHHHHHHHHHHHHH--hhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHH
Confidence 589999998775421 11222333333322 2345789999999886 56777788888899999999888887
Q ss_pred HHHHH
Q 009856 414 LLKLY 418 (523)
Q Consensus 414 il~~~ 418 (523)
||..-
T Consensus 1215 ILd~~ 1219 (1355)
T PRK10263 1215 ILDQA 1219 (1355)
T ss_pred hcCCc
Confidence 87653
No 489
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.81 E-value=0.0037 Score=63.99 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=41.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-----------c------hhhHHHHHHHHHHHHHhcCCceEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-----------L------GAQAVTKIHEIFDWAKKSKKGLLL 338 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-----------~------~~~~~~~l~~~f~~a~~~~~~~vL 338 (523)
.+++++|++|+||||+++++...+......+...+..+ + .+...-....++..+.+.. |.+|
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~-PD~I 239 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLR-PDRI 239 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccC-CCeE
Confidence 46999999999999999999988743211111111000 0 0011112345566665555 6799
Q ss_pred EEccch
Q 009856 339 FIDEAD 344 (523)
Q Consensus 339 ~iDEid 344 (523)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999995
No 490
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.81 E-value=0.0016 Score=60.24 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
++..++|.|+||+||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999999999885
No 491
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.011 Score=56.15 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+...+.|.||+|+|||||++.|+....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3445689999999999999999998753
No 492
>PLN02459 probable adenylate kinase
Probab=96.80 E-value=0.0011 Score=65.12 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.++|.||||+||||+|..||..+|.+++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58889999999999999999999876553
No 493
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0053 Score=64.78 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=42.2
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHh--------CCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccc
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKS--------GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEA 343 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l--------~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEi 343 (523)
.+||--+-+.||||||||||++.+.+.+ ..|+..+++-.---...+....++..++.|+-.. -.+|+||.-
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaKIaD-LVlLlIdgn 144 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAKIAD-LVLLLIDGN 144 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHHhhh-eeEEEeccc
Confidence 3455456689999999999999998876 3444444432211111133355666666665332 356677754
No 494
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.79 E-value=0.13 Score=53.77 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=46.4
Q ss_pred EEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC--CCCCcHHHhccccceEeecCCCHHHHHHH
Q 009856 337 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR--PGDLDSAITDRIDEVIEFPLPREEERFKL 414 (523)
Q Consensus 337 vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~--~~~l~~al~~Rf~~~i~~~~p~~~er~~i 414 (523)
||+||.+..-... .......|...-..+-...---+|++|++. ...|..++.+|.-..|.+...+.+.-+.+
T Consensus 151 VVVIdnF~~k~~~------~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 151 VVVIDNFLHKAEE------NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred EEEEcchhccCcc------cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 8889999652111 112222232222222212222234444432 34677888887558999999999988888
Q ss_pred HHHHHHhh
Q 009856 415 LKLYLKKY 422 (523)
Q Consensus 415 l~~~l~~~ 422 (523)
+...|...
T Consensus 225 V~~~L~~~ 232 (431)
T PF10443_consen 225 VLSQLDED 232 (431)
T ss_pred HHHHhccc
Confidence 88888664
No 495
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.79 E-value=0.0094 Score=60.80 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 310 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~ 310 (523)
...++|+||||||||+++..+|... +...++++...
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 3457899999999999999998663 23566665433
No 496
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.78 E-value=0.022 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
--+.|.||+|||||||...++...
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 358999999999999999998643
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.77 E-value=0.0058 Score=65.30 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc--------chhh-------HHHHHHHHHHHHHhcCCc
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------LGAQ-------AVTKIHEIFDWAKKSKKG 335 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~--------~~~~-------~~~~l~~~f~~a~~~~~~ 335 (523)
+...++|+|+||+|||+|+..++..+ +.+++++++.+-.. ++.. ....+..+...+... .+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~-~~ 171 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE-NP 171 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc-CC
Confidence 34468899999999999999997765 45677776543211 0000 001223333333333 46
Q ss_pred eEEEEccchhhhh
Q 009856 336 LLLFIDEADAFLC 348 (523)
Q Consensus 336 ~vL~iDEid~l~~ 348 (523)
.+|+||.+..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 8999999998754
No 498
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.77 E-value=0.001 Score=63.81 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=17.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q 009856 278 MLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l 299 (523)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776655
No 499
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.76 E-value=0.0013 Score=66.91 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=41.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEec-CCc-------ccchhhHHHHHHHHHHHHHhcCCceEEEEcc
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTG-GDV-------APLGAQAVTKIHEIFDWAKKSKKGLLLFIDE 342 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~-~~~-------~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDE 342 (523)
.+++|+|++|+|||+++++|+... ...++.+.. .++ ..+.....-.+..++..+.+.. |..|++.|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~-PD~IivGE 227 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMR-PDRILVGE 227 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCC-CCEEEEec
Confidence 469999999999999999999864 112222211 111 0011011113456666666555 68999999
Q ss_pred ch
Q 009856 343 AD 344 (523)
Q Consensus 343 id 344 (523)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 95
No 500
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.014 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+.-.+=|.|++||||||++++++...
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34458899999999999999999754
Done!