Query 009856
Match_columns 523
No_of_seqs 536 out of 2812
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_L 26S protease subunit RP 100.0 5.3E-40 1.8E-44 342.7 16.1 240 239-505 174-425 (437)
2 4b4t_J 26S protease regulatory 100.0 8.9E-37 3E-41 313.6 27.0 241 239-506 141-393 (405)
3 4b4t_I 26S protease regulatory 100.0 6.8E-36 2.3E-40 307.7 25.0 241 239-506 175-427 (437)
4 4b4t_M 26S protease regulatory 100.0 5.4E-36 1.8E-40 312.3 22.2 244 239-509 174-429 (434)
5 4b4t_H 26S protease regulatory 100.0 3.7E-35 1.3E-39 305.1 25.5 242 239-507 202-455 (467)
6 4b4t_K 26S protease regulatory 100.0 1.6E-34 5.5E-39 301.0 26.7 238 239-503 165-415 (428)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.3E-29 7.8E-34 255.4 26.0 213 240-479 6-227 (322)
8 3eie_A Vacuolar protein sortin 100.0 1.5E-29 5.2E-34 256.8 21.7 241 239-506 11-302 (322)
9 2qz4_A Paraplegin; AAA+, SPG7, 100.0 5.8E-29 2E-33 244.2 23.4 244 242-511 2-258 (262)
10 2qp9_X Vacuolar protein sortin 100.0 3.9E-29 1.3E-33 257.1 22.7 241 240-507 45-336 (355)
11 1lv7_A FTSH; alpha/beta domain 100.0 4E-28 1.4E-32 238.1 25.5 238 240-504 6-254 (257)
12 2ce7_A Cell division protein F 100.0 1.7E-28 5.9E-33 259.6 24.5 240 240-506 10-260 (476)
13 3h4m_A Proteasome-activating n 100.0 4.1E-28 1.4E-32 241.5 25.5 243 240-509 11-265 (285)
14 3cf2_A TER ATPase, transitiona 100.0 4.5E-31 1.6E-35 293.4 3.8 241 239-506 470-747 (806)
15 3cf2_A TER ATPase, transitiona 100.0 7.2E-30 2.5E-34 283.8 12.2 243 239-509 197-466 (806)
16 3hu3_A Transitional endoplasmi 100.0 2E-28 6.9E-33 261.0 18.4 242 241-510 199-467 (489)
17 2zan_A Vacuolar protein sortin 100.0 4.8E-28 1.7E-32 256.1 19.9 214 239-479 127-349 (444)
18 3d8b_A Fidgetin-like protein 1 100.0 4.6E-27 1.6E-31 241.9 26.4 240 240-506 78-338 (357)
19 3cf0_A Transitional endoplasmi 100.0 8.1E-28 2.8E-32 241.8 16.7 239 240-505 9-284 (301)
20 3b9p_A CG5977-PA, isoform A; A 99.9 3.3E-26 1.1E-30 229.2 24.3 240 240-505 15-275 (297)
21 3vfd_A Spastin; ATPase, microt 99.9 4.4E-26 1.5E-30 237.3 24.9 238 240-504 109-367 (389)
22 2dhr_A FTSH; AAA+ protein, hex 99.9 1.1E-26 3.7E-31 247.2 19.5 239 241-506 26-275 (499)
23 1ixz_A ATP-dependent metallopr 99.9 9E-26 3.1E-30 221.0 22.9 234 239-499 9-253 (254)
24 2x8a_A Nuclear valosin-contain 99.9 1.7E-26 5.9E-31 228.9 17.3 243 240-507 4-269 (274)
25 2r62_A Cell division protease 99.9 8.3E-29 2.8E-33 244.4 -0.5 243 240-509 5-260 (268)
26 1iy2_A ATP-dependent metallopr 99.9 7.6E-25 2.6E-29 217.5 25.3 232 241-499 35-277 (278)
27 3pfi_A Holliday junction ATP-d 99.9 2.2E-21 7.4E-26 197.7 26.3 216 241-502 24-254 (338)
28 3uk6_A RUVB-like 2; hexameric 99.9 2E-21 7E-26 200.0 24.6 226 238-504 36-332 (368)
29 3t15_A Ribulose bisphosphate c 99.9 2.3E-22 7.9E-27 201.2 15.0 175 245-421 6-200 (293)
30 1ypw_A Transitional endoplasmi 99.9 4.2E-25 1.4E-29 249.1 -6.4 219 239-484 470-700 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 3.3E-21 1.1E-25 204.6 22.7 236 237-504 28-439 (456)
32 3syl_A Protein CBBX; photosynt 99.9 2.3E-21 7.9E-26 194.8 19.5 223 247-501 32-285 (309)
33 1hqc_A RUVB; extended AAA-ATPa 99.9 7.6E-21 2.6E-25 192.2 22.9 217 241-502 7-238 (324)
34 1qvr_A CLPB protein; coiled co 99.9 1.6E-20 5.4E-25 213.9 25.0 207 245-476 557-813 (854)
35 1ofh_A ATP-dependent HSL prote 99.9 9.1E-21 3.1E-25 190.0 17.9 241 246-502 15-299 (310)
36 3u61_B DNA polymerase accessor 99.8 6.8E-21 2.3E-25 192.9 15.9 212 240-501 20-236 (324)
37 2chg_A Replication factor C sm 99.8 2.4E-19 8.2E-24 169.7 25.4 203 241-500 12-224 (226)
38 3pvs_A Replication-associated 99.8 4.5E-20 1.5E-24 194.7 19.1 211 241-502 21-244 (447)
39 1ypw_A Transitional endoplasmi 99.8 3E-20 1E-24 209.5 17.5 237 240-504 198-461 (806)
40 1d2n_A N-ethylmaleimide-sensit 99.8 6.5E-20 2.2E-24 181.2 16.9 205 246-484 33-248 (272)
41 2v1u_A Cell division control p 99.8 9.8E-19 3.4E-23 180.3 22.2 230 241-505 14-279 (387)
42 1njg_A DNA polymerase III subu 99.8 1.7E-18 6E-23 165.8 21.2 209 241-499 18-248 (250)
43 3pxi_A Negative regulator of g 99.8 9E-19 3.1E-23 197.2 21.7 202 246-476 491-718 (758)
44 2bjv_A PSP operon transcriptio 99.8 2.3E-19 7.9E-24 176.4 14.6 217 243-495 3-250 (265)
45 2r44_A Uncharacterized protein 99.8 6.1E-19 2.1E-23 179.1 18.0 238 244-505 25-300 (331)
46 4fcw_A Chaperone protein CLPB; 99.8 7E-19 2.4E-23 176.7 17.9 208 246-478 17-274 (311)
47 2chq_A Replication factor C sm 99.8 6.1E-19 2.1E-23 177.3 15.9 208 240-500 11-224 (319)
48 1in4_A RUVB, holliday junction 99.8 2.2E-17 7.7E-22 168.0 27.3 215 242-502 21-250 (334)
49 1sxj_D Activator 1 41 kDa subu 99.8 1.7E-18 5.8E-23 176.8 18.5 209 240-500 31-261 (353)
50 3bos_A Putative DNA replicatio 99.8 1.7E-18 5.9E-23 166.4 17.5 211 240-500 22-241 (242)
51 3hws_A ATP-dependent CLP prote 99.8 1.6E-18 5.5E-23 178.5 18.4 236 247-498 16-345 (363)
52 1l8q_A Chromosomal replication 99.8 1.6E-18 5.6E-23 175.5 18.2 224 239-504 4-242 (324)
53 3m6a_A ATP-dependent protease 99.8 1.2E-18 4E-23 188.5 16.4 228 246-501 81-340 (543)
54 1ojl_A Transcriptional regulat 99.8 6.9E-19 2.4E-23 176.8 13.0 210 246-496 2-246 (304)
55 2qby_B CDC6 homolog 3, cell di 99.8 7E-18 2.4E-22 174.2 20.8 221 242-504 16-272 (384)
56 1iqp_A RFCS; clamp loader, ext 99.8 4.2E-18 1.4E-22 171.7 18.6 204 240-500 19-232 (327)
57 1sxj_A Activator 1 95 kDa subu 99.8 8.6E-19 2.9E-23 188.8 13.8 220 240-501 33-273 (516)
58 1g8p_A Magnesium-chelatase 38 99.8 1.2E-17 4E-22 170.4 20.9 244 240-506 18-326 (350)
59 1jr3_A DNA polymerase III subu 99.8 1.3E-17 4.4E-22 171.5 21.1 205 240-499 10-241 (373)
60 2z4s_A Chromosomal replication 99.8 1.8E-17 6E-22 174.9 21.8 223 238-503 97-333 (440)
61 1sxj_B Activator 1 37 kDa subu 99.8 1.1E-17 3.6E-22 168.5 19.3 204 241-501 16-230 (323)
62 1um8_A ATP-dependent CLP prote 99.8 5.8E-18 2E-22 175.1 17.1 238 246-499 21-362 (376)
63 1r6b_X CLPA protein; AAA+, N-t 99.8 9.8E-18 3.3E-22 188.8 19.7 202 246-476 458-709 (758)
64 1fnn_A CDC6P, cell division co 99.8 1.2E-16 4.2E-21 164.9 25.1 225 241-503 12-275 (389)
65 3te6_A Regulatory protein SIR3 99.8 2.7E-18 9.3E-23 172.3 11.7 217 272-503 42-316 (318)
66 1ny5_A Transcriptional regulat 99.7 8.8E-19 3E-23 181.9 7.5 309 122-497 43-382 (387)
67 2qby_A CDC6 homolog 1, cell di 99.7 8.5E-17 2.9E-21 165.6 22.1 230 240-505 14-275 (386)
68 1g41_A Heat shock protein HSLU 99.7 9.1E-17 3.1E-21 167.7 21.3 240 246-501 15-432 (444)
69 1jbk_A CLPB protein; beta barr 99.7 4.7E-18 1.6E-22 156.9 10.3 160 241-415 17-194 (195)
70 1sxj_C Activator 1 40 kDa subu 99.7 2E-16 7E-21 161.2 20.4 206 240-500 19-237 (340)
71 1sxj_E Activator 1 40 kDa subu 99.7 2.8E-16 9.5E-21 160.7 20.5 194 240-485 8-244 (354)
72 1r6b_X CLPA protein; AAA+, N-t 99.7 1.1E-16 3.6E-21 180.4 18.9 226 242-503 182-434 (758)
73 3dzd_A Transcriptional regulat 99.7 2E-18 6.9E-23 177.9 4.3 295 122-491 43-367 (368)
74 3pxg_A Negative regulator of g 99.7 1.1E-16 3.9E-21 170.0 16.1 188 242-480 176-383 (468)
75 2p65_A Hypothetical protein PF 99.7 1.3E-16 4.5E-21 146.8 11.0 152 242-407 18-187 (187)
76 1qvr_A CLPB protein; coiled co 99.7 3.5E-16 1.2E-20 178.2 16.9 207 241-483 165-393 (854)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 3.2E-16 1.1E-20 166.8 12.8 232 246-500 22-283 (500)
78 3f9v_A Minichromosome maintena 99.6 9.4E-17 3.2E-21 175.2 6.8 242 246-505 295-590 (595)
79 3pxi_A Negative regulator of g 99.6 4.5E-15 1.5E-19 167.1 19.0 192 241-483 175-386 (758)
80 1a5t_A Delta prime, HOLB; zinc 99.6 7.1E-15 2.4E-19 149.5 17.7 158 272-475 21-205 (334)
81 3n70_A Transport activator; si 99.6 2.1E-15 7.1E-20 134.5 10.9 131 247-405 2-143 (145)
82 3co5_A Putative two-component 99.6 2.4E-15 8.1E-20 133.8 6.8 131 247-405 5-141 (143)
83 1w5s_A Origin recognition comp 99.6 3.1E-13 1.1E-17 140.5 23.6 233 242-503 18-294 (412)
84 2gno_A DNA polymerase III, gam 99.5 6.8E-14 2.3E-18 140.2 12.8 143 250-419 1-152 (305)
85 3k1j_A LON protease, ATP-depen 99.5 1.5E-13 5E-18 150.7 13.2 224 239-501 34-374 (604)
86 4akg_A Glutathione S-transfera 99.3 4.7E-11 1.6E-15 147.2 20.0 165 244-423 1242-1435(2695)
87 3f8t_A Predicted ATPase involv 99.2 4.5E-11 1.5E-15 124.1 14.0 220 248-505 215-486 (506)
88 3ec2_A DNA replication protein 99.2 4.1E-11 1.4E-15 110.2 9.7 133 241-387 5-144 (180)
89 1jr3_D DNA polymerase III, del 99.1 5.3E-10 1.8E-14 113.7 15.9 181 275-502 18-209 (343)
90 2qen_A Walker-type ATPase; unk 99.1 6.4E-09 2.2E-13 105.0 20.0 186 246-476 12-247 (350)
91 2kjq_A DNAA-related protein; s 99.0 6.9E-10 2.4E-14 99.1 10.2 106 274-404 35-146 (149)
92 2w58_A DNAI, primosome compone 99.0 5.2E-10 1.8E-14 104.6 8.7 102 241-346 20-127 (202)
93 2fna_A Conserved hypothetical 99.0 1.6E-08 5.4E-13 102.3 19.2 157 245-422 12-225 (357)
94 1tue_A Replication protein E1; 99.0 1.6E-09 5.6E-14 100.7 9.8 109 275-406 58-179 (212)
95 4akg_A Glutathione S-transfera 98.9 1.1E-07 3.6E-12 117.9 24.8 147 246-416 623-790 (2695)
96 3vkg_A Dynein heavy chain, cyt 98.9 1.4E-08 4.9E-13 126.1 16.5 165 244-423 1279-1473(3245)
97 2r2a_A Uncharacterized protein 98.8 3.3E-09 1.1E-13 99.2 6.5 126 277-409 7-156 (199)
98 2qgz_A Helicase loader, putati 98.8 1.6E-09 5.6E-14 108.5 3.0 100 242-346 120-226 (308)
99 3kw6_A 26S protease regulatory 98.7 2.2E-08 7.6E-13 78.8 7.9 75 404-504 1-75 (78)
100 1u0j_A DNA replication protein 98.7 1E-07 3.4E-12 92.6 12.2 118 275-418 104-250 (267)
101 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.6E-08 5.4E-13 100.7 5.0 112 275-392 123-241 (331)
102 2krk_A 26S protease regulatory 98.6 4.5E-08 1.5E-12 78.5 6.2 77 402-504 7-83 (86)
103 3cmw_A Protein RECA, recombina 98.6 1.3E-07 4.5E-12 112.4 11.7 145 239-385 1013-1217(1706)
104 3vkg_A Dynein heavy chain, cyt 98.5 1.9E-06 6.6E-11 107.5 17.7 146 246-415 582-749 (3245)
105 3vlf_B 26S protease regulatory 98.4 2.6E-07 8.9E-12 74.5 5.2 78 407-510 2-79 (88)
106 1ye8_A Protein THEP1, hypothet 98.4 1.5E-06 5.1E-11 79.6 10.4 26 277-302 2-27 (178)
107 3aji_B S6C, proteasome (prosom 98.3 6.9E-07 2.4E-11 71.1 5.5 75 407-507 2-76 (83)
108 1z6t_A APAF-1, apoptotic prote 98.1 2.6E-05 8.8E-10 84.7 14.5 47 245-297 123-169 (591)
109 3cmu_A Protein RECA, recombina 97.9 1.4E-05 4.6E-10 96.4 9.2 76 273-349 1425-1520(2050)
110 1svm_A Large T antigen; AAA+ f 97.9 4.8E-06 1.6E-10 85.3 4.7 105 272-395 166-272 (377)
111 2orw_A Thymidine kinase; TMTK, 97.9 3.1E-06 1.1E-10 77.9 2.6 30 277-306 5-37 (184)
112 2dzn_B 26S protease regulatory 97.8 2.7E-06 9.2E-11 67.5 0.2 69 410-504 2-70 (82)
113 2r8r_A Sensor protein; KDPD, P 97.8 0.00019 6.6E-09 67.7 12.5 120 276-409 7-168 (228)
114 2iut_A DNA translocase FTSK; n 97.8 0.0005 1.7E-08 73.6 17.0 75 335-416 344-420 (574)
115 2b8t_A Thymidine kinase; deoxy 97.8 9.8E-05 3.3E-09 69.9 9.9 113 276-403 13-149 (223)
116 2p5t_B PEZT; postsegregational 97.7 3.5E-05 1.2E-09 74.5 6.3 60 252-311 9-68 (253)
117 1g5t_A COB(I)alamin adenosyltr 97.7 0.00015 5.1E-09 67.0 9.8 117 276-404 29-178 (196)
118 1gvn_B Zeta; postsegregational 97.7 4.8E-05 1.7E-09 75.0 6.9 57 252-308 10-66 (287)
119 3upu_A ATP-dependent DNA helic 97.7 0.00016 5.6E-09 76.0 11.2 50 242-299 20-69 (459)
120 2cvh_A DNA repair and recombin 97.7 9.6E-05 3.3E-09 69.1 8.4 38 273-310 18-55 (220)
121 1qhx_A CPT, protein (chloramph 97.7 3.5E-05 1.2E-09 69.7 5.1 33 276-308 4-36 (178)
122 3sfz_A APAF-1, apoptotic pepti 97.6 0.00043 1.5E-08 81.2 15.4 147 244-419 122-299 (1249)
123 3trf_A Shikimate kinase, SK; a 97.6 2.9E-05 9.9E-10 70.8 4.2 32 275-306 5-36 (185)
124 2ehv_A Hypothetical protein PH 97.6 0.00025 8.6E-09 67.5 10.6 35 274-308 29-67 (251)
125 1xp8_A RECA protein, recombina 97.6 0.00029 9.9E-09 71.8 10.8 75 274-348 73-166 (366)
126 2a5y_B CED-4; apoptosis; HET: 97.6 0.00083 2.8E-08 72.3 15.0 140 249-418 131-305 (549)
127 3vaa_A Shikimate kinase, SK; s 97.6 4.5E-05 1.5E-09 70.7 4.3 33 274-306 24-56 (199)
128 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00025 8.5E-09 66.6 9.3 34 274-307 22-58 (235)
129 2ius_A DNA translocase FTSK; n 97.5 0.00096 3.3E-08 70.7 14.5 75 336-417 299-375 (512)
130 3hr8_A Protein RECA; alpha and 97.5 0.00041 1.4E-08 70.3 10.1 75 274-348 60-153 (356)
131 3kb2_A SPBC2 prophage-derived 97.5 7.9E-05 2.7E-09 66.7 4.4 30 277-306 3-32 (173)
132 3iij_A Coilin-interacting nucl 97.4 6.9E-05 2.4E-09 68.0 3.9 30 276-305 12-41 (180)
133 2i3b_A HCR-ntpase, human cance 97.4 0.00014 4.7E-09 67.1 5.9 23 277-299 3-25 (189)
134 2iyv_A Shikimate kinase, SK; t 97.4 7.3E-05 2.5E-09 68.1 4.1 30 277-306 4-33 (184)
135 1zuh_A Shikimate kinase; alpha 97.4 7.5E-05 2.6E-09 67.0 3.9 32 275-306 7-38 (168)
136 2cdn_A Adenylate kinase; phosp 97.4 9E-05 3.1E-09 68.6 4.6 32 275-306 20-51 (201)
137 2zr9_A Protein RECA, recombina 97.4 0.00034 1.2E-08 70.8 8.9 75 274-348 60-153 (349)
138 1via_A Shikimate kinase; struc 97.4 8.6E-05 3E-09 67.1 4.0 29 277-305 6-34 (175)
139 2z43_A DNA repair and recombin 97.4 0.00044 1.5E-08 69.3 9.3 37 274-310 106-151 (324)
140 1n0w_A DNA repair protein RAD5 97.4 0.00068 2.3E-08 64.2 10.2 37 274-310 23-68 (243)
141 2rhm_A Putative kinase; P-loop 97.4 0.00012 4.1E-09 66.9 4.7 31 275-305 5-35 (193)
142 1y63_A LMAJ004144AAA protein; 97.4 8.1E-05 2.8E-09 68.1 3.4 31 275-305 10-41 (184)
143 1u94_A RECA protein, recombina 97.4 0.00051 1.7E-08 69.7 9.5 75 274-348 62-155 (356)
144 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.9E-09 66.0 4.1 29 276-304 5-33 (173)
145 3cmu_A Protein RECA, recombina 97.3 0.00056 1.9E-08 82.7 11.0 77 273-349 1079-1174(2050)
146 1zp6_A Hypothetical protein AT 97.3 0.00011 3.6E-09 67.3 3.3 36 275-310 9-44 (191)
147 2c95_A Adenylate kinase 1; tra 97.3 0.00013 4.4E-09 66.9 3.8 31 276-306 10-40 (196)
148 3io5_A Recombination and repai 97.3 0.00033 1.1E-08 69.4 6.9 77 272-348 25-125 (333)
149 3lw7_A Adenylate kinase relate 97.3 0.00012 4E-09 65.5 3.2 29 277-306 3-31 (179)
150 1v5w_A DMC1, meiotic recombina 97.3 0.00094 3.2E-08 67.4 10.1 37 274-310 121-166 (343)
151 1e6c_A Shikimate kinase; phosp 97.3 0.00017 5.9E-09 64.7 4.2 29 277-305 4-32 (173)
152 1tev_A UMP-CMP kinase; ploop, 97.3 0.00018 6.2E-09 65.7 4.3 30 276-305 4-33 (196)
153 4a74_A DNA repair and recombin 97.3 0.0015 5.2E-08 61.1 10.9 26 274-299 24-49 (231)
154 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.9E-09 67.3 4.7 32 275-306 4-35 (220)
155 2ze6_A Isopentenyl transferase 97.2 0.00019 6.5E-09 69.3 4.5 32 277-308 3-34 (253)
156 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.7E-09 66.3 4.4 31 275-305 18-48 (202)
157 3cm0_A Adenylate kinase; ATP-b 97.2 0.00016 5.5E-09 65.8 3.7 29 277-305 6-34 (186)
158 2vli_A Antibiotic resistance p 97.2 0.00015 5.2E-09 65.7 3.5 29 276-304 6-34 (183)
159 2pez_A Bifunctional 3'-phospho 97.2 0.00027 9.4E-09 64.0 4.9 34 275-308 5-41 (179)
160 1ukz_A Uridylate kinase; trans 97.2 0.00018 6.3E-09 66.5 3.8 32 275-306 15-46 (203)
161 2pt5_A Shikimate kinase, SK; a 97.2 0.00021 7.1E-09 63.8 3.9 29 277-305 2-30 (168)
162 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.4E-09 67.2 3.7 30 277-306 2-31 (216)
163 1knq_A Gluconate kinase; ALFA/ 97.2 0.00025 8.6E-09 63.9 4.4 30 275-304 8-37 (175)
164 2bwj_A Adenylate kinase 5; pho 97.2 0.00018 6.2E-09 66.0 3.5 30 276-305 13-42 (199)
165 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.1E-09 66.8 4.0 30 277-306 2-31 (216)
166 1ly1_A Polynucleotide kinase; 97.2 0.00017 5.8E-09 65.1 3.1 28 276-303 3-31 (181)
167 3tlx_A Adenylate kinase 2; str 97.2 0.00021 7E-09 68.6 3.8 33 274-306 28-60 (243)
168 1kht_A Adenylate kinase; phosp 97.2 0.00021 7.3E-09 65.0 3.8 25 276-300 4-28 (192)
169 3umf_A Adenylate kinase; rossm 97.2 0.00025 8.7E-09 66.8 4.3 30 275-304 29-58 (217)
170 1vt4_I APAF-1 related killer D 97.1 0.0071 2.4E-07 68.9 16.3 43 248-297 130-172 (1221)
171 1ak2_A Adenylate kinase isoenz 97.1 0.00032 1.1E-08 66.7 4.8 32 275-306 16-47 (233)
172 3be4_A Adenylate kinase; malar 97.1 0.00025 8.4E-09 66.6 3.9 31 276-306 6-36 (217)
173 1zd8_A GTP:AMP phosphotransfer 97.1 0.0002 6.9E-09 67.6 3.3 30 276-305 8-37 (227)
174 3e1s_A Exodeoxyribonuclease V, 97.1 0.001 3.5E-08 71.9 9.2 31 276-306 205-238 (574)
175 1qf9_A UMP/CMP kinase, protein 97.1 0.00028 9.4E-09 64.3 4.1 30 276-305 7-36 (194)
176 3sr0_A Adenylate kinase; phosp 97.1 0.00028 9.7E-09 65.9 4.2 29 277-305 2-30 (206)
177 1zak_A Adenylate kinase; ATP:A 97.1 0.00026 9E-09 66.6 4.0 30 276-305 6-35 (222)
178 4eun_A Thermoresistant glucoki 97.1 0.00032 1.1E-08 64.9 4.4 36 274-311 28-63 (200)
179 2zts_A Putative uncharacterize 97.1 0.0021 7.2E-08 60.9 9.8 35 274-308 29-67 (251)
180 1pzn_A RAD51, DNA repair and r 97.1 0.0027 9.3E-08 64.2 11.1 26 274-299 130-155 (349)
181 2dr3_A UPF0273 protein PH0284; 97.0 0.0023 7.7E-08 60.6 9.9 35 274-308 22-59 (247)
182 2fz4_A DNA repair protein RAD2 97.0 0.0012 4E-08 63.0 7.8 31 277-307 110-140 (237)
183 2i1q_A DNA repair and recombin 97.0 0.0012 4.3E-08 65.7 8.2 25 274-298 97-121 (322)
184 1e4v_A Adenylate kinase; trans 97.0 0.00045 1.5E-08 64.6 4.4 30 277-306 2-31 (214)
185 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00053 1.8E-08 66.4 5.1 33 276-308 5-40 (260)
186 1w4r_A Thymidine kinase; type 97.0 0.0017 5.8E-08 59.8 8.0 34 275-308 20-56 (195)
187 2pbr_A DTMP kinase, thymidylat 97.0 0.00056 1.9E-08 62.4 4.9 31 277-307 2-35 (195)
188 3dm5_A SRP54, signal recogniti 97.0 0.0054 1.8E-07 63.7 12.8 72 274-346 99-194 (443)
189 3uie_A Adenylyl-sulfate kinase 97.0 0.00062 2.1E-08 62.9 5.1 36 273-308 23-61 (200)
190 1cke_A CK, MSSA, protein (cyti 97.0 0.00053 1.8E-08 64.4 4.5 28 277-304 7-34 (227)
191 2z0h_A DTMP kinase, thymidylat 96.9 0.001 3.5E-08 60.8 6.1 31 278-308 3-36 (197)
192 2v54_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 62.9 4.3 32 276-307 5-37 (204)
193 2jaq_A Deoxyguanosine kinase; 96.9 0.00053 1.8E-08 63.1 3.9 29 277-305 2-30 (205)
194 1nn5_A Similar to deoxythymidy 96.9 0.00058 2E-08 63.4 4.2 27 275-301 9-35 (215)
195 2wwf_A Thymidilate kinase, put 96.9 0.00055 1.9E-08 63.5 4.0 28 275-302 10-37 (212)
196 2xb4_A Adenylate kinase; ATP-b 96.9 0.00057 2E-08 64.4 4.1 30 277-306 2-31 (223)
197 3crm_A TRNA delta(2)-isopenten 96.9 0.00054 1.8E-08 68.4 3.9 32 276-307 6-37 (323)
198 1nks_A Adenylate kinase; therm 96.9 0.00037 1.3E-08 63.5 2.4 24 277-300 3-26 (194)
199 2if2_A Dephospho-COA kinase; a 96.9 0.00048 1.6E-08 63.7 3.2 29 277-306 3-31 (204)
200 2eyu_A Twitching motility prot 96.9 0.00069 2.3E-08 65.7 4.4 26 274-299 24-49 (261)
201 3lda_A DNA repair protein RAD5 96.9 0.0051 1.7E-07 63.3 11.2 37 274-310 177-222 (400)
202 3jvv_A Twitching mobility prot 96.8 0.0019 6.6E-08 65.4 7.8 24 276-299 124-147 (356)
203 3r20_A Cytidylate kinase; stru 96.8 0.0008 2.7E-08 64.0 4.5 29 276-304 10-38 (233)
204 2plr_A DTMP kinase, probable t 96.8 0.0011 3.8E-08 61.2 5.4 27 276-302 5-31 (213)
205 3ake_A Cytidylate kinase; CMP 96.8 0.00079 2.7E-08 62.2 4.3 30 277-306 4-33 (208)
206 1jjv_A Dephospho-COA kinase; P 96.8 0.00063 2.2E-08 63.0 3.6 28 277-305 4-31 (206)
207 3nwj_A ATSK2; P loop, shikimat 96.8 0.00082 2.8E-08 64.7 4.3 31 276-306 49-79 (250)
208 3cmw_A Protein RECA, recombina 96.8 0.003 1E-07 75.6 9.9 77 273-349 32-127 (1706)
209 2bbw_A Adenylate kinase 4, AK4 96.8 0.001 3.4E-08 63.7 4.8 30 275-304 27-56 (246)
210 2grj_A Dephospho-COA kinase; T 96.8 0.00068 2.3E-08 62.6 3.5 30 277-306 14-43 (192)
211 2r6a_A DNAB helicase, replicat 96.8 0.0042 1.5E-07 65.1 10.1 36 273-308 201-240 (454)
212 1nlf_A Regulatory protein REPA 96.8 0.0053 1.8E-07 59.7 10.0 25 275-299 30-54 (279)
213 3kl4_A SRP54, signal recogniti 96.7 0.0089 3.1E-07 62.0 11.8 35 274-308 96-133 (433)
214 1uj2_A Uridine-cytidine kinase 96.7 0.00087 3E-08 64.4 3.9 29 275-303 22-50 (252)
215 2yvu_A Probable adenylyl-sulfa 96.7 0.0015 5.2E-08 59.4 5.1 34 274-307 12-48 (186)
216 1uf9_A TT1252 protein; P-loop, 96.7 0.0011 3.8E-08 60.9 4.2 30 275-305 8-37 (203)
217 2qor_A Guanylate kinase; phosp 96.7 0.001 3.5E-08 61.6 3.8 28 273-300 10-37 (204)
218 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.5E-08 63.2 4.6 29 276-304 28-56 (252)
219 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0018 6.3E-08 64.9 5.7 68 277-345 173-251 (330)
220 2ged_A SR-beta, signal recogni 96.6 0.015 5.2E-07 52.5 11.5 25 274-298 47-71 (193)
221 2px0_A Flagellar biosynthesis 96.6 0.01 3.5E-07 58.4 10.8 35 274-308 104-142 (296)
222 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0012 4.1E-08 66.5 3.8 30 276-305 25-54 (359)
223 1q3t_A Cytidylate kinase; nucl 96.6 0.0018 6.2E-08 61.5 4.9 32 274-305 15-46 (236)
224 1rz3_A Hypothetical protein rb 96.5 0.0042 1.4E-07 57.3 7.2 34 274-307 21-57 (201)
225 3a8t_A Adenylate isopentenyltr 96.5 0.0011 3.6E-08 66.5 3.2 32 276-307 41-72 (339)
226 3exa_A TRNA delta(2)-isopenten 96.5 0.0049 1.7E-07 61.0 7.7 28 277-304 5-32 (322)
227 2q6t_A DNAB replication FORK h 96.5 0.0064 2.2E-07 63.5 9.2 36 273-308 198-237 (444)
228 3tau_A Guanylate kinase, GMP k 96.5 0.0015 5E-08 60.9 3.7 27 274-300 7-33 (208)
229 3foz_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 64.1 4.3 32 276-307 11-42 (316)
230 1vht_A Dephospho-COA kinase; s 96.5 0.0018 6.3E-08 60.4 4.4 29 276-305 5-33 (218)
231 3lxw_A GTPase IMAP family memb 96.5 0.017 5.7E-07 55.2 11.2 23 276-298 22-44 (247)
232 1w36_D RECD, exodeoxyribonucle 96.5 0.0045 1.6E-07 67.3 8.0 23 277-299 166-188 (608)
233 1xx6_A Thymidine kinase; NESG, 96.5 0.0041 1.4E-07 57.2 6.5 31 276-306 9-42 (191)
234 2h92_A Cytidylate kinase; ross 96.5 0.0019 6.5E-08 60.3 4.3 29 277-305 5-33 (219)
235 3c8u_A Fructokinase; YP_612366 96.5 0.0027 9.2E-08 59.0 5.3 27 274-300 21-47 (208)
236 1ex7_A Guanylate kinase; subst 96.5 0.002 7E-08 59.0 4.4 24 277-300 3-26 (186)
237 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6.2E-08 60.3 4.1 35 274-308 24-62 (211)
238 2qt1_A Nicotinamide riboside k 96.5 0.0011 3.7E-08 61.5 2.6 30 275-304 21-51 (207)
239 1kgd_A CASK, peripheral plasma 96.5 0.0018 6.1E-08 58.8 3.9 25 276-300 6-30 (180)
240 4i1u_A Dephospho-COA kinase; s 96.4 0.0036 1.2E-07 58.5 6.0 129 277-417 11-152 (210)
241 2j41_A Guanylate kinase; GMP, 96.4 0.0017 5.7E-08 59.9 3.7 25 275-299 6-30 (207)
242 3bh0_A DNAB-like replicative h 96.4 0.0097 3.3E-07 59.2 9.4 36 273-308 66-104 (315)
243 3eph_A TRNA isopentenyltransfe 96.4 0.0061 2.1E-07 62.4 7.9 30 276-305 3-32 (409)
244 2f6r_A COA synthase, bifunctio 96.4 0.0016 5.6E-08 63.7 3.5 30 275-305 75-104 (281)
245 1vma_A Cell division protein F 96.4 0.0084 2.9E-07 59.4 8.7 34 274-307 103-139 (306)
246 3def_A T7I23.11 protein; chlor 96.3 0.0093 3.2E-07 57.5 8.5 24 275-298 36-59 (262)
247 2v3c_C SRP54, signal recogniti 96.3 0.012 4.2E-07 61.0 9.9 35 274-308 98-135 (432)
248 3d3q_A TRNA delta(2)-isopenten 96.3 0.002 6.7E-08 64.7 3.6 30 277-306 9-38 (340)
249 2bdt_A BH3686; alpha-beta prot 96.3 0.0024 8.1E-08 58.2 3.9 24 277-300 4-27 (189)
250 3tr0_A Guanylate kinase, GMP k 96.3 0.0024 8.4E-08 58.7 4.0 24 276-299 8-31 (205)
251 3fdi_A Uncharacterized protein 96.3 0.0025 8.7E-08 59.1 4.0 29 277-305 8-36 (201)
252 1nrj_B SR-beta, signal recogni 96.3 0.017 5.8E-07 53.4 9.7 25 275-299 12-36 (218)
253 3asz_A Uridine kinase; cytidin 96.3 0.0019 6.6E-08 59.8 3.1 26 275-300 6-31 (211)
254 1t6n_A Probable ATP-dependent 96.2 0.038 1.3E-06 51.2 12.0 23 276-298 52-74 (220)
255 1lvg_A Guanylate kinase, GMP k 96.2 0.0025 8.4E-08 58.9 3.6 25 276-300 5-29 (198)
256 1ltq_A Polynucleotide kinase; 96.2 0.0021 7.2E-08 63.2 3.3 29 276-304 3-32 (301)
257 3b6e_A Interferon-induced heli 96.2 0.013 4.6E-07 53.8 8.7 24 276-299 49-72 (216)
258 1tf7_A KAIC; homohexamer, hexa 96.2 0.021 7.3E-07 60.9 11.3 36 274-309 38-77 (525)
259 3thx_A DNA mismatch repair pro 96.2 0.015 5E-07 66.2 10.4 22 276-297 663-684 (934)
260 3thx_B DNA mismatch repair pro 96.2 0.011 3.7E-07 67.1 9.2 104 275-387 673-797 (918)
261 2j9r_A Thymidine kinase; TK1, 96.2 0.012 4.1E-07 54.9 8.0 31 277-307 30-63 (214)
262 3zvl_A Bifunctional polynucleo 96.1 0.0024 8.1E-08 66.2 3.4 30 275-304 258-287 (416)
263 3tui_C Methionine import ATP-b 96.1 0.024 8.1E-07 57.4 10.6 26 274-299 53-78 (366)
264 3a00_A Guanylate kinase, GMP k 96.1 0.0031 1E-07 57.5 3.5 24 277-300 3-26 (186)
265 2axn_A 6-phosphofructo-2-kinas 96.1 0.018 6.3E-07 61.3 10.1 32 276-307 36-70 (520)
266 2qmh_A HPR kinase/phosphorylas 96.1 0.0029 9.8E-08 58.4 3.0 25 276-300 35-59 (205)
267 3ney_A 55 kDa erythrocyte memb 96.0 0.004 1.4E-07 57.5 4.0 26 275-300 19-44 (197)
268 1x6v_B Bifunctional 3'-phospho 96.0 0.0059 2E-07 66.2 5.7 35 274-308 51-88 (630)
269 1odf_A YGR205W, hypothetical 3 96.0 0.0083 2.8E-07 59.0 6.2 27 274-300 30-56 (290)
270 3k53_A Ferrous iron transport 96.0 0.028 9.5E-07 54.3 9.8 23 276-298 4-26 (271)
271 3llm_A ATP-dependent RNA helic 95.9 0.028 9.6E-07 53.0 9.6 21 276-296 77-97 (235)
272 1qde_A EIF4A, translation init 95.9 0.014 4.7E-07 54.4 7.3 17 276-292 52-68 (224)
273 1h65_A Chloroplast outer envel 95.9 0.03 1E-06 54.1 9.9 44 252-298 19-62 (270)
274 2dyk_A GTP-binding protein; GT 95.9 0.028 9.6E-07 48.7 8.8 22 277-298 3-24 (161)
275 3lxx_A GTPase IMAP family memb 95.9 0.014 4.8E-07 55.2 7.3 24 275-298 29-52 (239)
276 1wb9_A DNA mismatch repair pro 95.9 0.024 8.4E-07 63.4 10.1 25 274-298 606-630 (800)
277 4b3f_X DNA-binding protein smu 95.9 0.014 4.9E-07 63.9 8.1 40 250-299 190-229 (646)
278 1z6g_A Guanylate kinase; struc 95.8 0.005 1.7E-07 57.7 3.8 26 274-299 22-47 (218)
279 3vkw_A Replicase large subunit 95.8 0.03 1E-06 58.1 9.8 24 274-297 160-183 (446)
280 1c9k_A COBU, adenosylcobinamid 95.8 0.0051 1.8E-07 55.9 3.6 32 278-310 2-33 (180)
281 3p32_A Probable GTPase RV1496/ 95.8 0.055 1.9E-06 54.6 11.7 33 275-307 79-114 (355)
282 3gmt_A Adenylate kinase; ssgci 95.8 0.0062 2.1E-07 57.6 4.3 30 277-306 10-39 (230)
283 2j37_W Signal recognition part 95.8 0.036 1.2E-06 58.6 10.6 35 274-308 100-137 (504)
284 1tf7_A KAIC; homohexamer, hexa 95.8 0.026 9E-07 60.2 9.4 34 274-307 280-316 (525)
285 3fmo_B ATP-dependent RNA helic 95.7 0.073 2.5E-06 52.3 12.0 52 241-292 90-148 (300)
286 2orv_A Thymidine kinase; TP4A 95.7 0.037 1.3E-06 52.2 9.1 31 277-307 21-54 (234)
287 1bif_A 6-phosphofructo-2-kinas 95.7 0.022 7.5E-07 59.8 8.5 26 276-301 40-65 (469)
288 1s96_A Guanylate kinase, GMP k 95.7 0.0061 2.1E-07 57.3 3.8 28 273-300 14-41 (219)
289 1sky_E F1-ATPase, F1-ATP synth 95.7 0.078 2.7E-06 55.3 12.4 23 277-299 153-175 (473)
290 1kao_A RAP2A; GTP-binding prot 95.7 0.05 1.7E-06 47.2 9.5 22 277-298 5-26 (167)
291 3bgw_A DNAB-like replicative h 95.7 0.041 1.4E-06 57.4 10.3 36 273-308 195-233 (444)
292 3hdt_A Putative kinase; struct 95.7 0.0061 2.1E-07 57.5 3.7 29 277-305 16-44 (223)
293 4gp7_A Metallophosphoesterase; 95.7 0.0055 1.9E-07 55.1 3.1 20 276-295 10-29 (171)
294 2jeo_A Uridine-cytidine kinase 95.6 0.0058 2E-07 58.3 3.4 27 276-302 26-52 (245)
295 1znw_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 56.0 3.8 26 275-300 20-45 (207)
296 2gxq_A Heat resistant RNA depe 95.6 0.028 9.5E-07 51.4 7.9 18 276-293 39-56 (207)
297 1htw_A HI0065; nucleotide-bind 95.6 0.0075 2.6E-07 53.6 3.8 26 274-299 32-57 (158)
298 1gtv_A TMK, thymidylate kinase 95.6 0.003 1E-07 58.5 1.2 24 277-300 2-25 (214)
299 4eaq_A DTMP kinase, thymidylat 95.6 0.0079 2.7E-07 56.9 4.1 25 276-300 27-51 (229)
300 2v9p_A Replication protein E1; 95.5 0.0093 3.2E-07 59.0 4.5 28 272-299 123-150 (305)
301 3dz8_A RAS-related protein RAB 95.5 0.082 2.8E-06 47.6 10.7 23 277-299 25-47 (191)
302 1q57_A DNA primase/helicase; d 95.5 0.044 1.5E-06 58.0 10.1 35 274-308 241-279 (503)
303 1ewq_A DNA mismatch repair pro 95.5 0.038 1.3E-06 61.5 9.8 23 276-298 577-599 (765)
304 1a7j_A Phosphoribulokinase; tr 95.5 0.0061 2.1E-07 59.9 3.1 36 277-312 7-45 (290)
305 2xxa_A Signal recognition part 95.5 0.045 1.5E-06 56.8 9.7 38 273-310 98-139 (433)
306 1svi_A GTP-binding protein YSX 95.5 0.15 5.1E-06 45.7 12.2 24 275-298 23-46 (195)
307 3ice_A Transcription terminati 95.5 0.036 1.2E-06 56.3 8.6 26 274-299 173-198 (422)
308 1cr0_A DNA primase/helicase; R 95.5 0.013 4.6E-07 57.3 5.4 36 273-308 33-72 (296)
309 3aez_A Pantothenate kinase; tr 95.5 0.016 5.4E-07 57.6 5.9 28 273-300 88-115 (312)
310 1vec_A ATP-dependent RNA helic 95.4 0.027 9.3E-07 51.5 7.1 18 276-293 41-58 (206)
311 1r8s_A ADP-ribosylation factor 95.4 0.043 1.5E-06 47.7 8.1 22 277-298 2-23 (164)
312 3qf4_A ABC transporter, ATP-bi 95.4 0.1 3.5E-06 56.3 12.5 27 273-299 367-393 (587)
313 1xjc_A MOBB protein homolog; s 95.4 0.018 6.3E-07 51.7 5.5 33 276-308 5-40 (169)
314 3tqc_A Pantothenate kinase; bi 95.3 0.022 7.6E-07 56.6 6.6 26 275-300 92-117 (321)
315 3ber_A Probable ATP-dependent 95.3 0.039 1.3E-06 52.6 8.1 18 276-293 81-98 (249)
316 3fe2_A Probable ATP-dependent 95.3 0.029 9.8E-07 53.1 7.1 18 276-293 67-84 (242)
317 3lnc_A Guanylate kinase, GMP k 95.3 0.0064 2.2E-07 57.3 2.4 25 275-299 27-52 (231)
318 1zd9_A ADP-ribosylation factor 95.3 0.031 1.1E-06 50.4 7.0 22 277-298 24-45 (188)
319 1rj9_A FTSY, signal recognitio 95.3 0.011 3.9E-07 58.3 4.3 26 274-299 101-126 (304)
320 3b9q_A Chloroplast SRP recepto 95.3 0.024 8.3E-07 55.9 6.6 26 274-299 99-124 (302)
321 2o8b_B DNA mismatch repair pro 95.3 0.057 2E-06 62.0 10.5 22 275-296 789-810 (1022)
322 1p9r_A General secretion pathw 95.2 0.024 8.2E-07 58.6 6.6 49 243-300 144-192 (418)
323 3e70_C DPA, signal recognition 95.2 0.024 8.1E-07 56.7 6.4 27 273-299 127-153 (328)
324 3pey_A ATP-dependent RNA helic 95.2 0.099 3.4E-06 52.5 11.2 21 275-295 44-64 (395)
325 3bor_A Human initiation factor 95.2 0.024 8.1E-07 53.5 6.1 18 276-293 68-85 (237)
326 3iev_A GTP-binding protein ERA 95.2 0.045 1.5E-06 54.1 8.3 26 273-298 8-33 (308)
327 2v6i_A RNA helicase; membrane, 95.2 0.032 1.1E-06 57.9 7.5 17 276-292 3-19 (431)
328 1j8m_F SRP54, signal recogniti 95.2 0.046 1.6E-06 53.8 8.3 34 275-308 98-134 (297)
329 2xtp_A GTPase IMAP family memb 95.2 0.047 1.6E-06 52.1 8.2 25 274-298 21-45 (260)
330 3pqc_A Probable GTP-binding pr 95.2 0.064 2.2E-06 48.0 8.6 23 276-298 24-46 (195)
331 1m8p_A Sulfate adenylyltransfe 95.1 0.013 4.4E-07 63.2 4.4 33 276-308 397-433 (573)
332 3szr_A Interferon-induced GTP- 95.1 0.064 2.2E-06 58.2 9.9 24 276-299 46-69 (608)
333 1xti_A Probable ATP-dependent 95.1 0.13 4.6E-06 51.6 11.8 22 276-297 46-67 (391)
334 3iby_A Ferrous iron transport 95.1 0.13 4.3E-06 49.4 10.9 23 276-298 2-24 (256)
335 3qf4_B Uncharacterized ABC tra 95.1 0.07 2.4E-06 57.8 10.1 27 273-299 379-405 (598)
336 3iuy_A Probable ATP-dependent 95.1 0.045 1.6E-06 51.0 7.5 18 276-293 58-75 (228)
337 3tqf_A HPR(Ser) kinase; transf 95.0 0.012 4E-07 53.0 3.1 27 275-302 16-42 (181)
338 2ewv_A Twitching motility prot 95.0 0.012 4.2E-07 59.8 3.7 26 274-299 135-160 (372)
339 4edh_A DTMP kinase, thymidylat 95.0 0.031 1.1E-06 52.2 6.2 31 276-306 7-40 (213)
340 2og2_A Putative signal recogni 95.0 0.03 1E-06 56.7 6.4 26 274-299 156-181 (359)
341 2pl3_A Probable ATP-dependent 95.0 0.071 2.4E-06 50.0 8.7 18 276-293 63-80 (236)
342 1sq5_A Pantothenate kinase; P- 95.0 0.013 4.3E-07 58.1 3.5 26 275-300 80-105 (308)
343 1hv8_A Putative ATP-dependent 95.0 0.079 2.7E-06 52.7 9.5 23 276-298 45-67 (367)
344 1zu4_A FTSY; GTPase, signal re 95.0 0.032 1.1E-06 55.6 6.3 36 273-308 103-141 (320)
345 3tmk_A Thymidylate kinase; pho 94.9 0.041 1.4E-06 51.5 6.7 31 276-306 6-36 (216)
346 2oxc_A Probable ATP-dependent 94.9 0.081 2.8E-06 49.5 8.9 17 276-292 62-78 (230)
347 3v9p_A DTMP kinase, thymidylat 94.9 0.035 1.2E-06 52.4 6.2 31 276-306 26-63 (227)
348 3kta_A Chromosome segregation 94.9 0.016 5.6E-07 52.0 3.8 24 277-300 28-51 (182)
349 3t34_A Dynamin-related protein 94.8 0.11 3.9E-06 52.3 10.2 21 277-297 36-56 (360)
350 2bov_A RAla, RAS-related prote 94.8 0.15 5E-06 46.2 10.1 24 275-298 14-37 (206)
351 1np6_A Molybdopterin-guanine d 94.7 0.02 6.8E-07 51.7 3.9 24 276-299 7-30 (174)
352 1z06_A RAS-related protein RAB 94.7 0.14 4.7E-06 45.9 9.6 23 276-298 21-43 (189)
353 3tif_A Uncharacterized ABC tra 94.7 0.016 5.3E-07 55.1 3.2 26 274-299 30-55 (235)
354 1s2m_A Putative ATP-dependent 94.7 0.1 3.5E-06 52.8 9.6 21 276-296 59-79 (400)
355 3dkp_A Probable ATP-dependent 94.7 0.17 5.7E-06 47.6 10.5 18 276-293 67-84 (245)
356 1p5z_B DCK, deoxycytidine kina 94.7 0.0078 2.7E-07 58.0 1.0 26 275-300 24-49 (263)
357 2cbz_A Multidrug resistance-as 94.6 0.018 6E-07 54.8 3.2 27 273-299 29-55 (237)
358 2zuo_A MVP, major vault protei 94.6 4.6 0.00016 44.3 22.0 89 42-132 685-774 (861)
359 1q0u_A Bstdead; DEAD protein, 94.6 0.16 5.6E-06 46.9 9.9 19 276-294 42-60 (219)
360 4f4c_A Multidrug resistance pr 94.5 0.11 3.8E-06 61.5 10.5 27 273-299 442-468 (1321)
361 3eiq_A Eukaryotic initiation f 94.5 0.16 5.5E-06 51.5 10.5 19 276-294 78-96 (414)
362 4dcu_A GTP-binding protein ENG 94.5 0.075 2.6E-06 55.5 8.1 22 276-297 24-45 (456)
363 2xau_A PRE-mRNA-splicing facto 94.5 0.08 2.7E-06 59.2 8.8 58 241-298 70-132 (773)
364 2f7s_A C25KG, RAS-related prot 94.5 0.085 2.9E-06 48.5 7.7 22 277-298 27-48 (217)
365 2ocp_A DGK, deoxyguanosine kin 94.5 0.02 6.7E-07 54.3 3.3 25 276-300 3-27 (241)
366 2e87_A Hypothetical protein PH 94.5 0.16 5.6E-06 51.0 10.4 24 275-298 167-190 (357)
367 2pcj_A ABC transporter, lipopr 94.5 0.017 5.8E-07 54.4 2.8 25 275-299 30-54 (224)
368 3b85_A Phosphate starvation-in 94.4 0.017 5.9E-07 53.7 2.8 22 277-298 24-45 (208)
369 3lv8_A DTMP kinase, thymidylat 94.4 0.054 1.9E-06 51.4 6.3 24 276-299 28-51 (236)
370 2onk_A Molybdate/tungstate ABC 94.4 0.022 7.6E-07 54.2 3.6 24 276-299 25-48 (240)
371 3ly5_A ATP-dependent RNA helic 94.4 0.082 2.8E-06 50.7 7.6 19 276-294 92-110 (262)
372 1g8f_A Sulfate adenylyltransfe 94.4 0.026 9E-07 59.7 4.4 26 276-301 396-421 (511)
373 1wrb_A DJVLGB; RNA helicase, D 94.4 0.095 3.3E-06 49.7 8.0 18 276-293 61-78 (253)
374 2oap_1 GSPE-2, type II secreti 94.4 0.026 8.8E-07 59.9 4.3 34 276-309 261-296 (511)
375 4dhe_A Probable GTP-binding pr 94.4 0.11 3.9E-06 47.7 8.4 24 275-298 29-52 (223)
376 3sop_A Neuronal-specific septi 94.3 0.022 7.5E-07 55.3 3.3 23 277-299 4-26 (270)
377 2f1r_A Molybdopterin-guanine d 94.3 0.014 4.7E-07 52.6 1.8 24 277-300 4-27 (171)
378 3ozx_A RNAse L inhibitor; ATP 94.3 0.14 4.8E-06 54.6 9.7 24 276-299 295-318 (538)
379 1b0u_A Histidine permease; ABC 94.2 0.022 7.7E-07 54.9 3.2 26 274-299 31-56 (262)
380 3oiy_A Reverse gyrase helicase 94.2 0.11 3.6E-06 53.2 8.5 20 277-296 38-57 (414)
381 2gza_A Type IV secretion syste 94.2 0.019 6.3E-07 58.3 2.7 25 276-300 176-200 (361)
382 2f9l_A RAB11B, member RAS onco 94.2 0.026 8.8E-07 51.5 3.4 22 277-298 7-28 (199)
383 3i8s_A Ferrous iron transport 94.2 0.28 9.7E-06 47.3 11.1 23 276-298 4-26 (274)
384 1mv5_A LMRA, multidrug resista 94.2 0.022 7.5E-07 54.3 3.0 27 273-299 26-52 (243)
385 1sgw_A Putative ABC transporte 94.2 0.022 7.6E-07 53.2 2.9 24 276-299 36-59 (214)
386 2gk6_A Regulator of nonsense t 94.1 0.025 8.6E-07 61.6 3.7 23 277-299 197-219 (624)
387 4a1f_A DNAB helicase, replicat 94.1 0.044 1.5E-06 54.9 5.1 36 273-308 44-82 (338)
388 3cr8_A Sulfate adenylyltranfer 94.1 0.022 7.4E-07 61.1 3.0 25 276-300 370-394 (552)
389 2zu0_C Probable ATP-dependent 94.1 0.029 1E-06 54.3 3.7 26 273-298 44-69 (267)
390 2qtf_A Protein HFLX, GTP-bindi 94.1 0.36 1.2E-05 48.8 12.0 24 275-298 179-202 (364)
391 1oix_A RAS-related protein RAB 94.1 0.025 8.4E-07 51.4 3.0 23 277-299 31-53 (191)
392 2ghi_A Transport protein; mult 94.1 0.025 8.6E-07 54.5 3.2 27 273-299 44-70 (260)
393 2d2e_A SUFC protein; ABC-ATPas 94.1 0.029 9.9E-07 53.7 3.6 24 275-298 29-52 (250)
394 1z2a_A RAS-related protein RAB 94.1 0.029 1E-06 48.9 3.4 22 277-298 7-28 (168)
395 2zj8_A DNA helicase, putative 94.1 0.094 3.2E-06 58.1 8.2 18 276-293 40-57 (720)
396 2ixe_A Antigen peptide transpo 94.0 0.026 9E-07 54.8 3.2 27 273-299 43-69 (271)
397 2ff7_A Alpha-hemolysin translo 94.0 0.026 8.7E-07 54.0 3.1 26 274-299 34-59 (247)
398 4f4c_A Multidrug resistance pr 94.0 0.12 4E-06 61.3 9.3 26 274-299 1104-1129(1321)
399 1g6h_A High-affinity branched- 94.0 0.026 8.7E-07 54.3 3.1 25 275-299 33-57 (257)
400 2olj_A Amino acid ABC transpor 94.0 0.027 9.2E-07 54.4 3.2 26 274-299 49-74 (263)
401 3fvq_A Fe(3+) IONS import ATP- 94.0 0.029 9.9E-07 56.7 3.5 25 275-299 30-54 (359)
402 2yhs_A FTSY, cell division pro 94.0 0.031 1.1E-06 58.7 3.9 26 274-299 292-317 (503)
403 2pze_A Cystic fibrosis transme 94.0 0.026 9E-07 53.3 3.0 26 274-299 33-58 (229)
404 1wf3_A GTP-binding protein; GT 94.0 0.23 7.9E-06 48.7 10.0 22 277-298 9-30 (301)
405 1ji0_A ABC transporter; ATP bi 93.9 0.027 9.3E-07 53.5 3.1 25 275-299 32-56 (240)
406 3gfo_A Cobalt import ATP-bindi 93.9 0.027 9.2E-07 54.8 3.1 25 275-299 34-58 (275)
407 1lw7_A Transcriptional regulat 93.9 0.026 8.8E-07 57.2 3.0 27 276-302 171-197 (365)
408 1vpl_A ABC transporter, ATP-bi 93.9 0.029 9.8E-07 54.0 3.2 26 274-299 40-65 (256)
409 2ce2_X GTPase HRAS; signaling 93.9 0.031 1.1E-06 48.4 3.2 22 277-298 5-26 (166)
410 1u8z_A RAS-related protein RAL 93.9 0.03 1E-06 48.7 3.1 23 276-298 5-27 (168)
411 3ld9_A DTMP kinase, thymidylat 93.9 0.04 1.4E-06 51.9 4.0 27 275-301 21-47 (223)
412 2qi9_C Vitamin B12 import ATP- 93.8 0.029 9.8E-07 53.8 3.0 26 274-299 25-50 (249)
413 2yz2_A Putative ABC transporte 93.8 0.03 1E-06 54.1 3.2 26 274-299 32-57 (266)
414 1ek0_A Protein (GTP-binding pr 93.8 0.035 1.2E-06 48.5 3.4 22 277-298 5-26 (170)
415 4g1u_C Hemin import ATP-bindin 93.8 0.029 9.9E-07 54.3 3.0 26 274-299 36-61 (266)
416 2wji_A Ferrous iron transport 93.8 0.032 1.1E-06 49.1 3.1 21 277-297 5-25 (165)
417 2p67_A LAO/AO transport system 93.8 0.15 5.1E-06 51.0 8.4 26 274-299 55-80 (341)
418 2zej_A Dardarin, leucine-rich 93.8 0.027 9.2E-07 50.6 2.6 21 277-297 4-24 (184)
419 2fwr_A DNA repair protein RAD2 93.8 0.087 3E-06 54.9 6.9 31 277-307 110-140 (472)
420 2yyz_A Sugar ABC transporter, 93.8 0.036 1.2E-06 56.0 3.7 26 274-299 28-53 (359)
421 1z0j_A RAB-22, RAS-related pro 93.7 0.037 1.3E-06 48.4 3.4 23 277-299 8-30 (170)
422 2p6r_A Afuhel308 helicase; pro 93.7 0.054 1.8E-06 59.8 5.5 18 276-293 41-58 (702)
423 2it1_A 362AA long hypothetical 93.7 0.036 1.2E-06 56.1 3.7 25 275-299 29-53 (362)
424 1wms_A RAB-9, RAB9, RAS-relate 93.7 0.037 1.3E-06 48.9 3.4 23 276-298 8-30 (177)
425 3rlf_A Maltose/maltodextrin im 93.7 0.037 1.3E-06 56.4 3.7 26 274-299 28-53 (381)
426 2nzj_A GTP-binding protein REM 93.7 0.035 1.2E-06 48.8 3.2 23 276-298 5-27 (175)
427 3e2i_A Thymidine kinase; Zn-bi 93.7 0.3 1E-05 45.5 9.5 30 277-306 30-62 (219)
428 1z47_A CYSA, putative ABC-tran 93.7 0.036 1.2E-06 55.9 3.6 24 276-299 42-65 (355)
429 1yrb_A ATP(GTP)binding protein 93.7 0.071 2.4E-06 50.7 5.5 34 275-308 14-49 (262)
430 1ky3_A GTP-binding protein YPT 93.7 0.039 1.3E-06 48.9 3.4 23 276-298 9-31 (182)
431 1g16_A RAS-related protein SEC 93.7 0.036 1.2E-06 48.4 3.2 22 277-298 5-26 (170)
432 2gj8_A MNME, tRNA modification 93.6 0.034 1.2E-06 49.5 3.0 23 276-298 5-27 (172)
433 2ihy_A ABC transporter, ATP-bi 93.6 0.032 1.1E-06 54.4 3.0 26 274-299 46-71 (279)
434 2wsm_A Hydrogenase expression/ 93.6 0.077 2.6E-06 49.0 5.6 25 276-300 31-55 (221)
435 1v43_A Sugar-binding transport 93.6 0.039 1.3E-06 56.1 3.7 26 274-299 36-61 (372)
436 2nq2_C Hypothetical ABC transp 93.6 0.033 1.1E-06 53.5 3.0 26 274-299 30-55 (253)
437 1z08_A RAS-related protein RAB 93.6 0.04 1.4E-06 48.2 3.4 23 276-298 7-29 (170)
438 1f2t_A RAD50 ABC-ATPase; DNA d 93.6 0.047 1.6E-06 47.8 3.7 23 277-299 25-47 (149)
439 2lkc_A Translation initiation 93.5 0.048 1.6E-06 48.2 3.8 23 275-297 8-30 (178)
440 2npi_A Protein CLP1; CLP1-PCF1 93.5 0.058 2E-06 56.5 4.9 26 274-299 137-162 (460)
441 1c1y_A RAS-related protein RAP 93.5 0.043 1.5E-06 47.8 3.4 22 277-298 5-26 (167)
442 3ch4_B Pmkase, phosphomevalona 93.5 0.055 1.9E-06 49.9 4.2 29 273-301 9-37 (202)
443 1r2q_A RAS-related protein RAB 93.5 0.043 1.5E-06 47.8 3.4 22 277-298 8-29 (170)
444 3q85_A GTP-binding protein REM 93.5 0.041 1.4E-06 48.1 3.2 21 277-297 4-24 (169)
445 2erx_A GTP-binding protein DI- 93.5 0.041 1.4E-06 48.1 3.2 21 277-297 5-25 (172)
446 2vp4_A Deoxynucleoside kinase; 93.5 0.041 1.4E-06 51.8 3.3 28 275-303 20-47 (230)
447 1g29_1 MALK, maltose transport 93.4 0.042 1.4E-06 55.9 3.6 24 276-299 30-53 (372)
448 1upt_A ARL1, ADP-ribosylation 93.4 0.049 1.7E-06 47.7 3.6 23 276-298 8-30 (171)
449 3d31_A Sulfate/molybdate ABC t 93.4 0.032 1.1E-06 56.2 2.7 26 274-299 25-50 (348)
450 3q72_A GTP-binding protein RAD 93.4 0.043 1.5E-06 47.9 3.2 21 277-297 4-24 (166)
451 3bc1_A RAS-related protein RAB 93.4 0.045 1.5E-06 48.9 3.4 23 276-298 12-34 (195)
452 2gks_A Bifunctional SAT/APS ki 93.4 0.059 2E-06 57.7 4.8 33 276-308 373-408 (546)
453 2va8_A SSO2462, SKI2-type heli 93.4 0.14 4.8E-06 56.6 8.0 19 276-294 47-65 (715)
454 1ls1_A Signal recognition part 93.4 0.078 2.7E-06 52.0 5.3 35 274-308 97-134 (295)
455 3o8b_A HCV NS3 protease/helica 93.3 0.56 1.9E-05 51.2 12.4 20 276-295 233-252 (666)
456 4tmk_A Protein (thymidylate ki 93.3 0.044 1.5E-06 51.2 3.2 23 277-299 5-27 (213)
457 1tq4_A IIGP1, interferon-induc 93.3 0.068 2.3E-06 55.1 5.0 29 449-478 320-348 (413)
458 4ag6_A VIRB4 ATPase, type IV s 93.3 0.075 2.6E-06 54.2 5.3 25 275-299 35-59 (392)
459 2wjy_A Regulator of nonsense t 93.3 0.044 1.5E-06 61.4 3.7 23 277-299 373-395 (800)
460 2x2e_A Dynamin-1; nitration, h 93.3 0.35 1.2E-05 48.5 10.2 23 275-297 31-53 (353)
461 2hf9_A Probable hydrogenase ni 93.3 0.052 1.8E-06 50.4 3.7 25 275-299 38-62 (226)
462 3l9o_A ATP-dependent RNA helic 93.3 0.14 4.7E-06 59.5 8.0 22 276-297 200-221 (1108)
463 1z0f_A RAB14, member RAS oncog 93.2 0.05 1.7E-06 47.9 3.4 24 276-299 16-39 (179)
464 2wjg_A FEOB, ferrous iron tran 93.2 0.047 1.6E-06 48.8 3.2 23 276-298 8-30 (188)
465 2y8e_A RAB-protein 6, GH09086P 93.2 0.047 1.6E-06 48.1 3.2 23 276-298 15-37 (179)
466 2pjz_A Hypothetical protein ST 93.2 0.036 1.2E-06 53.5 2.6 24 276-299 31-54 (263)
467 4dsu_A GTPase KRAS, isoform 2B 93.2 0.05 1.7E-06 48.5 3.4 22 277-298 6-27 (189)
468 2www_A Methylmalonic aciduria 93.2 0.12 4E-06 52.1 6.4 25 275-299 74-98 (349)
469 2oil_A CATX-8, RAS-related pro 93.1 0.052 1.8E-06 48.9 3.4 22 277-298 27-48 (193)
470 2bbs_A Cystic fibrosis transme 93.1 0.042 1.5E-06 53.8 3.0 27 273-299 62-88 (290)
471 2hxs_A RAB-26, RAS-related pro 93.1 0.049 1.7E-06 48.1 3.2 23 276-298 7-29 (178)
472 3gd7_A Fusion complex of cysti 93.1 0.048 1.7E-06 55.7 3.5 27 273-299 45-71 (390)
473 3hjn_A DTMP kinase, thymidylat 93.1 0.14 4.8E-06 46.9 6.4 30 278-307 3-35 (197)
474 2ffh_A Protein (FFH); SRP54, s 93.1 0.081 2.8E-06 54.7 5.2 35 274-308 97-134 (425)
475 2fn4_A P23, RAS-related protei 93.1 0.049 1.7E-06 48.1 3.2 23 276-298 10-32 (181)
476 3con_A GTPase NRAS; structural 93.1 0.053 1.8E-06 48.6 3.4 22 277-298 23-44 (190)
477 1dek_A Deoxynucleoside monopho 93.1 0.09 3.1E-06 50.0 5.1 27 277-303 3-29 (241)
478 3tw8_B RAS-related protein RAB 93.1 0.048 1.6E-06 48.2 3.0 22 276-297 10-31 (181)
479 1m7b_A RND3/RHOE small GTP-bin 93.1 0.051 1.7E-06 48.7 3.2 23 276-298 8-30 (184)
480 1ko7_A HPR kinase/phosphatase; 93.0 0.06 2E-06 53.2 3.9 28 275-303 144-171 (314)
481 2efe_B Small GTP-binding prote 93.0 0.056 1.9E-06 47.9 3.4 23 276-298 13-35 (181)
482 2a9k_A RAS-related protein RAL 93.0 0.056 1.9E-06 48.0 3.4 23 276-298 19-41 (187)
483 2qm8_A GTPase/ATPase; G protei 93.0 0.077 2.6E-06 53.1 4.7 26 274-299 54-79 (337)
484 3i5x_A ATP-dependent RNA helic 93.0 0.57 2E-05 49.8 11.9 17 276-292 112-128 (563)
485 3clv_A RAB5 protein, putative; 93.0 0.06 2.1E-06 48.4 3.6 23 276-298 8-30 (208)
486 2bme_A RAB4A, RAS-related prot 93.0 0.053 1.8E-06 48.3 3.2 23 276-298 11-33 (186)
487 1oxx_K GLCV, glucose, ABC tran 93.0 0.034 1.2E-06 56.1 2.0 26 274-299 30-55 (353)
488 3kkq_A RAS-related protein M-R 92.9 0.057 2E-06 48.0 3.3 24 275-298 18-41 (183)
489 4hlc_A DTMP kinase, thymidylat 92.9 0.13 4.6E-06 47.5 5.9 29 278-306 5-35 (205)
490 2g6b_A RAS-related protein RAB 92.9 0.06 2E-06 47.6 3.4 23 276-298 11-33 (180)
491 1m2o_B GTP-binding protein SAR 92.9 0.057 1.9E-06 48.8 3.3 22 276-297 24-45 (190)
492 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.061 2.1E-06 47.8 3.4 22 277-298 7-28 (186)
493 2cxx_A Probable GTP-binding pr 92.8 0.051 1.8E-06 48.5 2.9 22 277-298 3-24 (190)
494 1moz_A ARL1, ADP-ribosylation 92.8 0.073 2.5E-06 47.2 3.8 23 274-296 17-39 (183)
495 3nh6_A ATP-binding cassette SU 92.8 0.039 1.3E-06 54.5 2.2 27 273-299 78-104 (306)
496 2db3_A ATP-dependent RNA helic 92.8 0.68 2.3E-05 47.7 11.7 49 241-292 54-110 (434)
497 4a2p_A RIG-I, retinoic acid in 92.7 0.92 3.1E-05 47.8 13.0 22 277-298 24-45 (556)
498 2gf9_A RAS-related protein RAB 92.7 0.064 2.2E-06 48.1 3.4 22 277-298 24-45 (189)
499 3t1o_A Gliding protein MGLA; G 92.7 0.066 2.3E-06 48.0 3.4 24 276-299 15-38 (198)
500 3sqw_A ATP-dependent RNA helic 92.6 0.64 2.2E-05 49.8 11.7 18 276-293 61-78 (579)
No 1
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-40 Score=342.73 Aligned_cols=240 Identities=24% Similarity=0.377 Sum_probs=203.0
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+.+++.|...+.. +.++ ..+..|+++||||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46788999999999999999998775 4443 234678899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.+++...+..+|..|.... ||||||||+|.++++|.+.+ .+......++.||..++ ....+++||+|||+|+.
T Consensus 254 k~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred ccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 77788899999999998765 79999999999998885533 23455677888888875 34457899999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|||+|++ ||+..|+|++|+.++|..||+.++.+... .++.++..||..|+||
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--------------------------~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--------------------------TGEFDFEAAVKMSDGF 386 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB--------------------------CSCCCHHHHHHTCCSC
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC--------------------------CcccCHHHHHHhCCCC
Confidence 9999988 69999999999999999999999987654 1223588999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
||+||..+|+.+...+...+...||.+||..+++...+.
T Consensus 387 sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 387 NGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 999999999866555555666789999999999987763
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-37 Score=313.63 Aligned_cols=241 Identities=22% Similarity=0.329 Sum_probs=205.5
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+.+++.|...+.. +.++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 34788999999999999999998775 4443 235678899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.+++...++.+|..|.... ||||||||+|.+++.+.... .+......++.+|..++ ....+++||+|||+|+.
T Consensus 221 k~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred cccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 77789999999999998766 79999999999998876433 23455678888888876 35568999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|||+|++ ||+..|+|++|+.++|..||+.++.+... .++.++..||..|+||
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--------------------------~~dvdl~~lA~~t~G~ 353 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--------------------------TRGINLRKVAEKMNGC 353 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--------------------------CSSCCHHHHHHHCCSC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--------------------------CccCCHHHHHHHCCCC
Confidence 9999998 99999999999999999999999887644 1223588999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
||+||..+|+.+...+...+...||.+||..+++...+..
T Consensus 354 SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 354 SGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 9999999998666556556677899999999999987754
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-36 Score=307.75 Aligned_cols=241 Identities=21% Similarity=0.314 Sum_probs=204.6
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+.+++.|...+.. +.++ ..+..|+++||||||||||||++|+++|.+++.+|+.++++++..
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45788999999999999999998876 3332 344578899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.++....++.+|..|.... ||||||||+|.+++.|.... .+......++.+|..++ ....+++||+|||+++.
T Consensus 255 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred ccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 77788999999999998766 79999999999999885432 23355677888887765 45568999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|||+|++ |||..|+|++|+.++|..||+.++.+... .++.+++.||..|+||
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--------------------------~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--------------------------SEDVNLETLVTTKDDL 387 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--------------------------CSCCCHHHHHHHCCSC
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--------------------------CCcCCHHHHHHhCCCC
Confidence 9999998 99999999999999999999999987544 1222588999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
||+||..+|+.+...+.......||.+||..+++...+..
T Consensus 388 SGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 388 SGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 9999999998666666666677899999999999887754
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=312.29 Aligned_cols=244 Identities=23% Similarity=0.321 Sum_probs=203.4
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+.+++.|...+.. +.++ ..+.+|+++||||||||||||++|+++|.+++.+|+.++++++..
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45788999999999999999886654 3332 335578899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccC--cHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM--SEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~ 388 (523)
+.+++...++.+|..|.... ||||||||+|.++++|..... .......++.+|..++. ...+++||+|||+|+.
T Consensus 254 ~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred cccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 67788899999999998766 799999999999998865432 34556778888888863 3457899999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
|||+|++ ||+..|+|++|+.++|..||+.++.+... .++.++..||..|+||
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--------------------------~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--------------------------DDDINWQELARSTDEF 386 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--------------------------CSCCCHHHHHHHCSSC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------CCcCCHHHHHHhCCCC
Confidence 9999988 99999999999999999999999987654 1222478999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhc
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
||+||..+|+.+...+...+...|+.+||..+++...+...+.
T Consensus 387 sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 387 NGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCcC
Confidence 9999999998655555555667899999999998876644333
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-35 Score=305.06 Aligned_cols=242 Identities=22% Similarity=0.332 Sum_probs=203.4
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+.+++.|...+.. +.++ ..+..|+++||||||||||||++|+++|.+++.+|+.++++++..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 35788999999999999999987765 3332 334578999999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.+++...++.+|..|.... ||||||||+|.++..|.... ........++.+|..++ ....+++||+|||+++.
T Consensus 282 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 67788899999999998766 79999999999998886533 23455667788887775 34568999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
||++|++ ||+..|+|++|+.++|..||+.++.+... ..+..++.||..|+||
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--------------------------~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--------------------------ERGIRWELISRLCPNS 414 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--------------------------CSSCCHHHHHHHCCSC
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------CCCCCHHHHHHHCCCC
Confidence 9999998 99999999999999999999999887644 1222478899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhh
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~ 507 (523)
||+||..+|+.+...+.......+|.+||..+++..++...
T Consensus 415 SGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 415 TGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 99999999976555555556678999999999999887654
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=300.98 Aligned_cols=238 Identities=24% Similarity=0.364 Sum_probs=200.5
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|..+|++|.|.+.+++.|...+.. +.++ ..+..|++|+|||||||||||++|+++|..++.+|+.++++++..
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45788999999999999999987765 3332 335678899999999999999999999999999999999998764
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.+++...++.+|..|.... ||||||||+|.+++.+... ..+......++.||..++ ....+++||+|||+++.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred cccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 67788999999999998766 7999999999999887543 223355677888887775 34568999999999999
Q ss_pred CcHHHhc--cccceEeec-CCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 389 LDSAITD--RIDEVIEFP-LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~-~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
+||+|++ ||+..|+|| +|+..+|..||+.++.+... .++.+++.||..|+|
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--------------------------~~~~dl~~lA~~t~G 377 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--------------------------APEADLDSLIIRNDS 377 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--------------------------CTTCCHHHHHHHTTT
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--------------------------CcccCHHHHHHHCCC
Confidence 9999998 999999996 89999999999999987644 123358899999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
|||+||..+|+.+...+...+...|+.+||..++...+
T Consensus 378 ~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 378 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 99999999998665555666678899999999998754
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=255.43 Aligned_cols=213 Identities=26% Similarity=0.441 Sum_probs=175.7
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHH-hcchh---cCCCCceEEEEcCCCCchHHHHHHHHHHh-CCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTKI---HQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~-~~~~~---~~~p~~~vLL~GppGtGKT~lA~ala~~l-~~~~~~v~~~~~~~- 313 (523)
.|..+|++|+|.+.+++.|...+... ..+.. ...|++++|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 45678999999999999999877543 22221 23567899999999999999999999999 89999999988764
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC---CCCCEEEEEeeCCCCCCc
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~v~iI~ttn~~~~l~ 390 (523)
+.+.....+..+|..+.... ++||||||+|.+.+.+.... .......++.++..++. ...+++||+|||.++.++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccccc-chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 45566778889998887554 78999999999988776543 33455667777766642 457899999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++++||+..+++++|+.++|..|++.++..... .+++..+..|+..|.||||+|
T Consensus 164 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------------------------~l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 164 SAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-------------------------SLTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-------------------------CCCHHHHHHHHHTCTTCCHHH
T ss_pred HHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999876543 367889999999999999999
Q ss_pred HHHHHHHHH
Q 009856 471 IAKLMASVQ 479 (523)
Q Consensus 471 I~~L~~~~~ 479 (523)
|..||..+.
T Consensus 219 l~~l~~~A~ 227 (322)
T 1xwi_A 219 ISIIVRDAL 227 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997444
No 8
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.5e-29 Score=256.80 Aligned_cols=241 Identities=24% Similarity=0.376 Sum_probs=188.7
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc-c---hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN-T---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~-~---~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
..+...|++++|.+.+++.+...+..... + .....|++++|||||||||||++|+++|..++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 35677899999999999999987754322 1 223456789999999999999999999999999999999988644
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh---CCCCCCEEEEEeeCCCCCCc
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT---GDQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~v~iI~ttn~~~~l~ 390 (523)
+.+.....+..+|..+.... ++||||||+|.+.+.+.... ........+.++..+ .....+++||+|||.++.++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCc-chHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 56677788899999887654 68999999999987664321 112233444444444 34567899999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++++||+..++|++|+.++|..|++.++..... .+++..+..|+..+.||||+|
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-------------------------VLTKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-------------------------CCCHHHHHHHHHTTTTCCHHH
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999876543 368889999999999999999
Q ss_pred HHHHHHHHHHHHHcC-------------------------------------------CCCccCHHHHHHHHHHHHHhh
Q 009856 471 IAKLMASVQAAVYAR-------------------------------------------PDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 471 I~~L~~~~~~a~~~~-------------------------------------------~~~~it~e~~~~~l~~~~~~~ 506 (523)
|..+|..+...++.. ....||.+||..++....|..
T Consensus 224 i~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 224 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 999996443332210 013599999999999887754
No 9
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=5.8e-29 Score=244.15 Aligned_cols=244 Identities=22% Similarity=0.331 Sum_probs=181.3
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchh----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-chh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 316 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~~ 316 (523)
...|++++|.+.+++.+..++.....+.. +..+++++||+||||||||++|+++|..++.+++.++++++.. +.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 45789999999999999998877655432 2356678999999999999999999999999999999998765 555
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc---CcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcH
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH---MSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~---~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~ 391 (523)
.....+..+|..+.... ++||||||+|.+...+.... .+......++.++..+.. ...+++||+|||.++.+++
T Consensus 82 ~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 82 LGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred hhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 66777888898887554 78999999999977654321 122334566777766542 3457999999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCH-HHHHHHHHHCCCCCH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD-NVIQEAARKTEGFSG 468 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~la~~t~G~sg 468 (523)
++++ ||+..++|++|+.++|..|++.++..... ..+. ..+..++..+.||+|
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-------------------------TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-------------------------CBTHHHHHHHHHHTCTTCCH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-------------------------CcchhhHHHHHHHHCCCCCH
Confidence 9999 99999999999999999999999987644 1222 246889999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhcch
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 511 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~~~ 511 (523)
++|..+++.+...+...+...|+.++|..++....+....+.+
T Consensus 216 ~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~ 258 (262)
T 2qz4_A 216 ADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSK 258 (262)
T ss_dssp HHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhhH
Confidence 9999999877666666666789999999999999887665543
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=3.9e-29 Score=257.13 Aligned_cols=241 Identities=23% Similarity=0.350 Sum_probs=184.4
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHH-hcc---hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~-~~~---~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|++|+|.+.+++.|...+... ..+ .....|++++|||||||||||++|+++|..++.+|+.++++++.. +
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence 46778999999999999998876543 222 123456789999999999999999999999999999999887643 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC---CCCCCEEEEEeeCCCCCCcH
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---~~~~~v~iI~ttn~~~~l~~ 391 (523)
.+.....+..+|..+.... ++||||||+|.+.+.+.... ........+.++..++ ....+++||+|||.++.+++
T Consensus 125 ~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp ---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCH
T ss_pred cchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCc-chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCH
Confidence 4566677888898886544 78999999999987665432 2234445555555443 44568999999999999999
Q ss_pred HHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHH
Q 009856 392 AITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 471 (523)
Q Consensus 392 al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI 471 (523)
++++||+..++|++|+.++|..||+.++..... .+++..+..|+..+.||+|+||
T Consensus 203 al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------------------------~~~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 203 AIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-------------------------VLTKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CCCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999876543 3678899999999999999999
Q ss_pred HHHHHHHHHHHHcC-------------------------------------------CCCccCHHHHHHHHHHHHHhhh
Q 009856 472 AKLMASVQAAVYAR-------------------------------------------PDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 472 ~~L~~~~~~a~~~~-------------------------------------------~~~~it~e~~~~~l~~~~~~~~ 507 (523)
..+|+.+...++.. ....||.+||..++..+.|...
T Consensus 258 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 258 AVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 99997555444321 0125999999999999988643
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=4e-28 Score=238.15 Aligned_cols=238 Identities=24% Similarity=0.360 Sum_probs=189.2
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchh----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|++++|.+.+++.+..++..+..+.. +..++++++|+||||||||++|+++|..++.|++.++++++.. .
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 4567899999999999999998877655322 2345678999999999999999999999999999999988754 3
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+... .++++||||+|.+...+... .........++.++..++. ...+++||+|||.++.++
T Consensus 86 ~~~~~~~~~~~~~~a~~~-~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKA-APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCHHHHHHHHHHHHTT-CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHc-CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 345556778888887644 46899999999998765432 1122334566777766652 355799999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
+++++ ||+..+.|++|+.++|..|++.++..... .++..+..++..|.||++
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l--------------------------~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--------------------------APDIDAAIIARGTPGFSG 218 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCCH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC--------------------------CccccHHHHHHHcCCCCH
Confidence 99998 99999999999999999999998876433 112236678999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
+||..+|..+...+...+...||.++|..+++....
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 999999987777777666789999999999988653
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.7e-28 Score=259.60 Aligned_cols=240 Identities=23% Similarity=0.343 Sum_probs=189.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+..+|++|+|.+.++..+..++..+.++. .+..+++++||+||||||||++|+++|..++.||+.++++++.. +
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 345689999999999999999988766532 23356778999999999999999999999999999999998765 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+.... |+||||||+|.+.+++... +........++.++..++ ....+++||++||.++.++
T Consensus 90 ~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 4556677888998887654 7999999999998776532 222234456777776664 2345799999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
+++++ ||+..|.|++|+.++|..|++.++..... .++..+..++..|.||+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--------------------------~~~v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--------------------------AEDVNLEIIAKRTPGFVG 222 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--------------------------cchhhHHHHHHhcCCCcH
Confidence 99987 99999999999999999999998876433 112236779999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 469 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
+||..+|+.+...+...+...|+.++|..+++..++..
T Consensus 223 adL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~ 260 (476)
T 2ce7_A 223 ADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGP 260 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCc
Confidence 99999998666655555667899999999999887643
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=4.1e-28 Score=241.50 Aligned_cols=243 Identities=28% Similarity=0.424 Sum_probs=197.2
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHh-cc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
.+...|++++|.+.+++.+...+.... .. ..+..+++++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 456789999999999999988765432 21 112356778999999999999999999999999999999988754
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCC
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l 389 (523)
+.+.....+..+|..+.... ++||||||+|.+.+++.+.. .....+..+..++..++ ....+++||+|||.++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred ccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 55666777888888887654 68999999999987665432 23355667777777654 344589999999999999
Q ss_pred cHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 390 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 390 ~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
++++++ ||+.++.|++|+.+++..|++.++..... ..+..+..++..+.||+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL--------------------------AEDVNLEEIAKMTEGCV 223 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHHCTTCC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC--------------------------CCcCCHHHHHHHcCCCC
Confidence 999999 99999999999999999999999876543 12234788999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhc
Q 009856 468 GREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
|++|..+|+.+...+.......||.++|..++....+....+
T Consensus 224 ~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~~~ 265 (285)
T 3h4m_A 224 GAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVK 265 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhccccc
Confidence 999999999888888887788999999999999998755443
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=4.5e-31 Score=293.41 Aligned_cols=241 Identities=27% Similarity=0.431 Sum_probs=159.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHh-cc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..|...|+++.|.+.+++.|..++.... ++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 3467789999999999999988766432 22 223467889999999999999999999999999999999988754
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.+++...++.+|..|+... ||||||||+|.+++.|+.. ..+.....+++.||..++ ....+++||+|||+|+.
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred cccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 67788899999999998665 7999999999999988642 223455678899988876 34557999999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
||+++++ ||+..|+|++|+.++|..||+.++.+... .++.++..||..|+||
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~--------------------------~~~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--------------------------AKDVDLEFLAKMTNGF 682 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----------------------------CCC-------------
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC--------------------------CCCCCHHHHHHhCCCC
Confidence 9999999 99999999999999999999988765433 2334688999999999
Q ss_pred CHHHHHHHHHHHHHHHHcC-------------------------CCCccCHHHHHHHHHHHHHhh
Q 009856 467 SGREIAKLMASVQAAVYAR-------------------------PDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~-------------------------~~~~it~e~~~~~l~~~~~~~ 506 (523)
||+||..+|+.+...+... ....|+.+||..++....|..
T Consensus 683 SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 683 SGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 9999999997444333210 012588999999999988764
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=7.2e-30 Score=283.80 Aligned_cols=243 Identities=25% Similarity=0.415 Sum_probs=196.6
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHH-Hhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..+..+|++|.|.+..++.|..++.. +.++. .+..|+++||||||||||||++|+++|.++|.+|+.++|+++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34677899999999999999988765 44432 23468899999999999999999999999999999999998754
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCc
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~ 390 (523)
+.++....+..+|..|.... |+||||||+|.+++++++.. +......++.|+..++ ....+++||+|||+++.+|
T Consensus 277 k~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 77788899999999997655 79999999999999876543 3344667777776654 2345799999999999999
Q ss_pred HHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
++|++ ||+..|+|+.|+..+|..||+.++.+... .++.++..||..|.||+|
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~--------------------------~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--------------------------ADDVDLEQVANETHGHVG 408 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE--------------------------CTTCCHHHHHHHCCSCCH
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC--------------------------CcccCHHHHHHhcCCCCH
Confidence 99998 99999999999999999999998776543 233458899999999999
Q ss_pred HHHHHHHHHHHHHHHcC-----------------CCCccCHHHHHHHHHHHHHhhhhc
Q 009856 469 REIAKLMASVQAAVYAR-----------------PDCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 469 rdI~~L~~~~~~a~~~~-----------------~~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
+||..||+.+...+... ....++.+||..++....|...+.
T Consensus 409 aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~ 466 (806)
T 3cf2_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCccccc
Confidence 99999997544333211 012578889999998887766543
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=2e-28 Score=260.99 Aligned_cols=242 Identities=25% Similarity=0.417 Sum_probs=192.2
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHh-cc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
+...|++++|.+..++.+..++.... .+ ..+..++.++|||||||||||++|+++|..++.+|+.++|+.+.. +
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 34578999999999999988776532 21 122456788999999999999999999999999999999988754 5
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcHH
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 392 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~a 392 (523)
.++..+.+..+|..+.... +++|||||+|.+.+++.... .......+..|+..++ ....+++||+|||.++.++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcC-CcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 6678888999999987655 68999999999988765432 2334445555555443 345689999999999999999
Q ss_pred Hhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 393 ITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 393 l~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++ ||+..++|++|+.++|..||+.++..... ..+..+..++..+.||+++|
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l--------------------------~~~~~l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--------------------------ADDVDLEQVANETHGHVGAD 410 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB--------------------------CTTCCHHHHHHTCTTCCHHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC--------------------------cchhhHHHHHHHccCCcHHH
Confidence 998 99999999999999999999998876543 12235788999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-----------------CccCHHHHHHHHHHHHHhhhhcc
Q 009856 471 IAKLMASVQAAVYARPD-----------------CVLDSQLFREVVEYKVEEHHQRI 510 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~-----------------~~it~e~~~~~l~~~~~~~~~~~ 510 (523)
|..||..+...++.... ..+|.++|..++..+.|...+.+
T Consensus 411 L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~ 467 (489)
T 3hu3_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET 467 (489)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcc
Confidence 99999765555544321 14899999999999999876553
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=4.8e-28 Score=256.13 Aligned_cols=214 Identities=26% Similarity=0.426 Sum_probs=169.3
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHH-hcch---hcCCCCceEEEEcCCCCchHHHHHHHHHHh-CCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~-~~~~---~~~~p~~~vLL~GppGtGKT~lA~ala~~l-~~~~~~v~~~~~~~ 313 (523)
..+...|++|+|.+.+++.|...+... ..+. ....|++++|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 356778999999999999998876432 2211 123567899999999999999999999999 88999999988754
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC---CCCCEEEEEeeCCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDL 389 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~v~iI~ttn~~~~l 389 (523)
+.+.....+..+|..+.... ++||||||+|.+++.+.... .......++.++..++. ...+++||+|||.++.+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~l 284 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 284 (444)
T ss_dssp -----CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGS
T ss_pred hhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCcc-ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcccc
Confidence 34444556788888876544 78999999999987765443 33455677888877754 45689999999999999
Q ss_pred cHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 390 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++++++||+..++|++|+.++|..|+..++..... .+++..+..|+..+.||||+
T Consensus 285 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------------------------~l~~~~l~~la~~t~G~sga 339 (444)
T 2zan_A 285 DSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-------------------------SLTEADFQELGRKTDGYSGA 339 (444)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-------------------------ECCHHHHHHHHHHTTTCCHH
T ss_pred CHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999876533 36788999999999999999
Q ss_pred HHHHHHHHHH
Q 009856 470 EIAKLMASVQ 479 (523)
Q Consensus 470 dI~~L~~~~~ 479 (523)
||..+|..+.
T Consensus 340 dl~~l~~~a~ 349 (444)
T 2zan_A 340 DISIIVRDAL 349 (444)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999996444
No 18
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=241.89 Aligned_cols=240 Identities=23% Similarity=0.352 Sum_probs=187.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHH-hcch---hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~-~~~~---~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|++++|.+.+++.+...+... ..+. ....+++++||+||||||||++|+++|..++.+|+.++++++.. +
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 35678999999999999998877642 2211 12356789999999999999999999999999999999988765 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----CCCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+.... ++||||||+|.+.+.+.... .......++.++..+. ....+++||+|||.++.++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCc-chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 5566677788888876544 78999999999987654322 2233455555555543 2346899999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++++||+..+++++|+.++|..++..++..... .++++.+..|+..+.||+|++
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-------------------------CLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-------------------------CCCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-------------------------CccHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999876543 368889999999999999999
Q ss_pred HHHHHHHHHHHHHc------------CCCCccCHHHHHHHHHHHHHhh
Q 009856 471 IAKLMASVQAAVYA------------RPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 471 I~~L~~~~~~a~~~------------~~~~~it~e~~~~~l~~~~~~~ 506 (523)
|..||..+...++. .....|+.+||..++....|..
T Consensus 291 l~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 291 MTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 99999754333322 2345799999999999998754
No 19
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=8.1e-28 Score=241.80 Aligned_cols=239 Identities=27% Similarity=0.436 Sum_probs=179.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHH-hcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
.|..+|++++|.+.+++.+...+... ..+ ..+..++.++|||||||||||++|+++|..++.+++.++|+++..
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 46678899999999999999887653 211 123466789999999999999999999999999999999877643
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCC
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l 389 (523)
+.+.....+..+|..+.... +++|||||+|.+.+.+.... ........++.++..++ ....+++||+|||.++.+
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 33344456788888886554 78999999999987654311 01111233444554443 234579999999999999
Q ss_pred cHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 390 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 390 ~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
++++++ ||+..++|++|+.++|..|++.++..... ..+..+..++..+.|||
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--------------------------~~~~~~~~la~~~~g~s 221 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--------------------------AKDVDLEFLAKMTNGFS 221 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CSSCCHHHHHHTCSSCC
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--------------------------CccchHHHHHHHcCCCC
Confidence 999998 99999999999999999999999876543 11224677888999999
Q ss_pred HHHHHHHHHHHHHHHHcC-------------------------CCCccCHHHHHHHHHHHHHh
Q 009856 468 GREIAKLMASVQAAVYAR-------------------------PDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~-------------------------~~~~it~e~~~~~l~~~~~~ 505 (523)
|+||..+|..+...++.. ....|+.+||..++....|.
T Consensus 222 g~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 222 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 999999997554433310 01368999999999887553
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=3.3e-26 Score=229.19 Aligned_cols=240 Identities=24% Similarity=0.357 Sum_probs=180.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhc-ch---hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATAN-TK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~-~~---~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|++++|.+.+++.+...+..... +. ....+++++||+||||||||++|+++|..++.+|+.++++.+.. .
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 3567889999999999999887654321 11 11246679999999999999999999999999999999988754 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+... .++||||||+|.+...+.... ........+...+..... ...+++||++||.++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp CSCHHHHHHHHHHHHHHT-CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred cchHHHHHHHHHHHHHHc-CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 445566777888877654 478999999999987654321 122222223333333321 125689999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++++||+..+++++|+.+++..|+..++..... .+++..+..++..+.||++++
T Consensus 174 ~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 174 EAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-------------------------PLDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-------------------------CSCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999876533 367889999999999999999
Q ss_pred HHHHHHHHHHHHHc------------CCCCccCHHHHHHHHHHHHHh
Q 009856 471 IAKLMASVQAAVYA------------RPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 471 I~~L~~~~~~a~~~------------~~~~~it~e~~~~~l~~~~~~ 505 (523)
|..+|..+...++. +....||.+||..++....|.
T Consensus 229 l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 229 LTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp HHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 99999744333332 123579999999998876553
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=4.4e-26 Score=237.30 Aligned_cols=238 Identities=25% Similarity=0.382 Sum_probs=176.6
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|++++|.+.+++.+..++...... .....+++++|||||||||||++|+++|..++.+|+.++|+.+.. +
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc
Confidence 35678999999999999998877543321 112345689999999999999999999999999999999988765 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH---hC-CCCCCEEEEEeeCCCCCCc
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR---TG-DQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~---~~-~~~~~v~iI~ttn~~~~l~ 390 (523)
.+.....+..+|..+.... ++||||||||.++..+...... .....+..++.. .. ....+++||+|||.++.++
T Consensus 189 ~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGEHD-ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ---CHHHHHHHHHHHHHSS-SEEEEEETGGGGC--------C-THHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCccch-HHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 4456667888898887654 6899999999997765432211 122333333333 32 2356799999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++++||+..++|+.|+.++|..|+..++..... .++++.+..|+..+.||++++
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~l~~~~~~~la~~~~g~~~~~ 321 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-------------------------PLTQKELAQLARMTDGYSGSD 321 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-------------------------CSCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999989999999999999999999876543 478889999999999999999
Q ss_pred HHHHHHHHHHHHHcC------------CCCccCHHHHHHHHHHHHH
Q 009856 471 IAKLMASVQAAVYAR------------PDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 471 I~~L~~~~~~a~~~~------------~~~~it~e~~~~~l~~~~~ 504 (523)
|..|+..+...++.. ....|+.+||..++....+
T Consensus 322 l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 322 LTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 999997544333322 3457999999999987654
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-26 Score=247.24 Aligned_cols=239 Identities=23% Similarity=0.332 Sum_probs=189.0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchh----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-ch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~ 315 (523)
+..+|++|+|.++++..+..++..+.++.. +..+++++||+||||||||++|++||..++.+++.++++++.. +.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 567899999999999999999887765422 2345678999999999999999999999999999999998765 34
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcH
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~ 391 (523)
+.....+..+|..+... .++++||||+|.+...+... .........++.++..++ .....+++|++||.|+.+|+
T Consensus 106 g~~~~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp THHHHHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhHHHHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 45556677888665432 36899999999998765431 223455677888887775 33456889999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++++ ||+..|.|++|+.++|..||+.++..... .++..+..++..|.||+|+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l--------------------------~~dv~l~~lA~~t~G~~ga 238 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--------------------------AEDVDLALLAKRTPGFVGA 238 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC--------------------------CCSSTTHHHHTTSCSCCHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCC--------------------------ChHHHHHHHHHhcCCCCHH
Confidence 9998 89999999999999999999877654321 1223477899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhh
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 506 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~ 506 (523)
||..+|+.+...+.......||.++|..+++...+..
T Consensus 239 dL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 239 DLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp HHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhccc
Confidence 9999998655555444556899999999999887653
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=9e-26 Score=221.00 Aligned_cols=234 Identities=23% Similarity=0.351 Sum_probs=178.0
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
..|..+|++++|.+.++..+..+........ .+...+++++|+||||||||+++++++..++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 3567789999999999999999887664421 12345567999999999999999999999999999998876643
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCC
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l 389 (523)
..+.....+..+|..+... .++++|+||+|.+...+... .........++.++..++ .....+++++++|.|+.+
T Consensus 89 ~~~~~~~~i~~~~~~~~~~-~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTS-SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HhhHHHHHHHHHHHHHHhc-CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 2334455677788776533 36899999999987655421 123344556677776654 334567888999999999
Q ss_pred cHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCC
Q 009856 390 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 467 (523)
Q Consensus 390 ~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 467 (523)
++++++ ||+..++|++|+.++|..|++.++..... .++..+..++..|.||+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--------------------------AEDVDLALLAKRTPGFV 221 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCC
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC--------------------------CcccCHHHHHHHcCCCC
Confidence 999998 89999999999999999999988754322 12224778999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 468 GREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
|+||..+|+.+...+.......||.+++.+++
T Consensus 222 ~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 222 GADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 99999999866666655556789999998875
No 24
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=228.86 Aligned_cols=243 Identities=22% Similarity=0.335 Sum_probs=171.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHH-HHhcc----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAK-ATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~-~~~~~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
.|..+|++|.|.+.+++.+...+. ...+. ..+..++++++|+||||||||++++++|..++.+++.+++.++..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 456788999999999999987543 33332 223356678999999999999999999999999999999988765
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcH
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~ 391 (523)
..++....+..+|..+.... ++++|+||+|.++..+.... .......++.++..++ .....++++++||.|+.+|+
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCH
T ss_pred hhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCc-chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCH
Confidence 44566677888998875444 78999999999876543221 1122345566666654 34557888899999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC--CCCC
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGFS 467 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~s 467 (523)
++++ ||+..|+|++|+.++|..||+.++..... .+ ...+..+..+|..+ +|||
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~-~~----------------------~~~~~~~~~la~~~~~~g~s 218 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK-PP----------------------LDADVNLEAIAGDLRCDCYT 218 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT-TB----------------------BCTTCCHHHHHTCSGGGSCC
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC-CC----------------------CccccCHHHHHHhhccCCcC
Confidence 9998 99999999999999999999998754221 00 01233578888864 5999
Q ss_pred HHHHHHHHHHHHHHHHcC-----------CCCccCHHHHHHHHHHHHHhhh
Q 009856 468 GREIAKLMASVQAAVYAR-----------PDCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~-----------~~~~it~e~~~~~l~~~~~~~~ 507 (523)
|+||..+|+.+...+... ....|+.+||..+++...|...
T Consensus 219 gadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 219 GADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 999999997554443321 1237999999999998877543
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=8.3e-29 Score=244.37 Aligned_cols=243 Identities=23% Similarity=0.349 Sum_probs=178.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchh----cCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-c
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~ 314 (523)
.+...|++++|.+.+++.+..++..+..+.. ...+++++||+||||||||++|+++|..++.+++.++++.+.. +
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 4567899999999999999998876554321 3355678999999999999999999999999999999887654 2
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCc---HHHHHHHHHHHHHhCC---CCCCEEEEEeeCCCCC
Q 009856 315 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGD---QSRDIVLVLATNRPGD 388 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~---~~~~~~l~~ll~~~~~---~~~~v~iI~ttn~~~~ 388 (523)
.+.....+..+|..+... .++||||||+|.+...+..++.. ......++.++..+.. ...+++||+|||.++.
T Consensus 85 ~~~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQ-APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp SSSCSSSSSTTHHHHHHS-CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred cchHHHHHHHHHHHHHhc-CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 222333455667766554 46899999999997765322100 0111234455554432 3346899999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+++++.+ ||+..+.|++|+.++|..+|+.++..... .++..+..++..+.||
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL--------------------------ANDVNLQEVAKLTAGL 217 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC--------------------------CSSCCTTTTTSSSCSS
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC--------------------------CCccCHHHHHHHcCCC
Confidence 9999998 99999999999999999999988865432 1112345678889999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhhhhc
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 509 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~~~~~ 509 (523)
+|+||+.+++.+...+...+...|+.+++..++....+....+
T Consensus 218 ~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 218 AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp CHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC--
T ss_pred CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcchhh
Confidence 9999999998776666655667899999999988877765444
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=7.6e-25 Score=217.46 Aligned_cols=232 Identities=23% Similarity=0.353 Sum_probs=177.8
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-ch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~ 315 (523)
+..+|++++|.+.++..+..+........ .+...+++++|+||||||||+++++++..++.+++.+++.++.. ..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 67789999999999999999887665421 22344567999999999999999999999999999998877643 23
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCCCCCCcH
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~~~~l~~ 391 (523)
+.....+..+|..+... .++++|+||+|.+...+... .........++.++..++. ....+++++++|.|+.+++
T Consensus 115 ~~~~~~i~~~~~~~~~~-~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp THHHHHHHHHHHHHHTS-CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hHHHHHHHHHHHHHHhc-CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 34445677788777543 36899999999987654321 1233445677777777653 3446788899999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++++ ||+..++|++|+.++|..||+.++..... .++..+..++..|.||+|+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--------------------------AEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC--------------------------CcccCHHHHHHHcCCCCHH
Confidence 9998 89999999999999999999988764322 1222477899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
||..+|..+...+.......||.++|.+++
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999866655555555789999998875
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=2.2e-21 Score=197.65 Aligned_cols=216 Identities=19% Similarity=0.237 Sum_probs=165.9
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 320 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~ 320 (523)
.+.+|++++|++.++..+...+..... ...++.++||+||||||||++|+++|..++.+|+.++|+.+.. .+
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~---~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-----~~ 95 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK---RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK-----SG 95 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH---TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-----HH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh---cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-----hh
Confidence 345889999999999999887776542 2345567999999999999999999999999999999876642 22
Q ss_pred HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC---------------CCCCEEEEEeeCC
Q 009856 321 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---------------QSRDIVLVLATNR 385 (523)
Q Consensus 321 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------------~~~~v~iI~ttn~ 385 (523)
.+...+. ....+++|||||++.+ +...+..|..++..... ...+++||++||.
T Consensus 96 ~~~~~~~---~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~ 163 (338)
T 3pfi_A 96 DLAAILT---NLSEGDILFIDEIHRL---------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR 163 (338)
T ss_dssp HHHHHHH---TCCTTCEEEEETGGGC---------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESC
T ss_pred HHHHHHH---hccCCCEEEEechhhc---------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCC
Confidence 2333332 2446789999999987 33455566655544220 1124899999999
Q ss_pred CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 386 PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 386 ~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
...+++++++||+.++.|++|+.+++..++..++..... .++++.+..++..+.|
T Consensus 164 ~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-------------------------~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 164 AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-------------------------TCEEKAALEIAKRSRS 218 (338)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------------------------EECHHHHHHHHHTTTT
T ss_pred ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHHCc
Confidence 999999999999999999999999999999998876543 4688899999998877
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
+++++..++..+...+.......|+.+++..++...
T Consensus 219 -~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 219 -TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 666777777655445555566789999999888763
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=2e-21 Score=200.01 Aligned_cols=226 Identities=15% Similarity=0.213 Sum_probs=166.0
Q ss_pred cccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCcccch
Q 009856 238 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAPLG 315 (523)
Q Consensus 238 ~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~~~ 315 (523)
...|...|++++|++.++..+..+...+... ..+++++||+||||||||++|+++|..++. |++.+++..+....
T Consensus 36 ~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~---~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 36 ALEPRQASQGMVGQLAARRAAGVVLEMIREG---KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHHHHHHHTT---CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred ccCcCcchhhccChHHHHHHHHHHHHHHHcC---CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 3456677999999999999988877766643 234578999999999999999999999975 78888765532211
Q ss_pred --------------------------------------------------hhHHHHHHHHHHHHHh----cC----CceE
Q 009856 316 --------------------------------------------------AQAVTKIHEIFDWAKK----SK----KGLL 337 (523)
Q Consensus 316 --------------------------------------------------~~~~~~l~~~f~~a~~----~~----~~~v 337 (523)
+.....+...+..+.. .. .++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 0112223333333221 11 1469
Q ss_pred EEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee-----------CCCCCCcHHHhccccceEeecCC
Q 009856 338 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT-----------NRPGDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 338 L~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt-----------n~~~~l~~al~~Rf~~~i~~~~p 406 (523)
|||||+|.+. . ..++.++..+.....+++++++. |.+..+++++++||. .+.|++|
T Consensus 193 l~IDEi~~l~---------~---~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~i~~~~~ 259 (368)
T 3uk6_A 193 LFIDEVHMLD---------I---ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-IVSTTPY 259 (368)
T ss_dssp EEEESGGGSB---------H---HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-EEEECCC
T ss_pred EEEhhccccC---------h---HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-EEEecCC
Confidence 9999999873 2 34455555556555566555443 347789999999994 5899999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCC
Q 009856 407 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 486 (523)
Q Consensus 407 ~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~ 486 (523)
+.+++..++..++..... .++++.+..++..+.|.++|++..++..+...+...+
T Consensus 260 ~~~e~~~il~~~~~~~~~-------------------------~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~ 314 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDV-------------------------EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 314 (368)
T ss_dssp CHHHHHHHHHHHHHHTTC-------------------------CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999876433 4789999999999984588999999987766666667
Q ss_pred CCccCHHHHHHHHHHHHH
Q 009856 487 DCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 487 ~~~it~e~~~~~l~~~~~ 504 (523)
...||.+++..++..+..
T Consensus 315 ~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 315 GTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp CSSBCHHHHHHHHHHSBC
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 789999999999988543
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=2.3e-22 Score=201.16 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=113.6
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-chhhHHHHHH
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIH 323 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~-~~~~~~~~l~ 323 (523)
+++++..+.....+...+..-........+++++|||||||||||++|+++|+.++.+|+.++++.+.. +.+.....+.
T Consensus 6 ~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~ 85 (293)
T 3t15_A 6 LDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR 85 (293)
T ss_dssp ETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHH
Confidence 345555665555443322211111223456789999999999999999999999999999999988654 5567777888
Q ss_pred HHHHHHH---hcCCceEEEEccchhhhhhcccccC-cHHHHHHHHHHHHHhC-------------CCCCCEEEEEeeCCC
Q 009856 324 EIFDWAK---KSKKGLLLFIDEADAFLCERNSIHM-SEAQRSALNALLFRTG-------------DQSRDIVLVLATNRP 386 (523)
Q Consensus 324 ~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~-~~~~~~~l~~ll~~~~-------------~~~~~v~iI~ttn~~ 386 (523)
..|..+. ....++||||||+|.+.+.+.+... ....+.+...|+..++ ....+++||+|||.+
T Consensus 86 ~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 86 QRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp HHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 8888873 2345789999999999875442211 1112233344443331 134579999999999
Q ss_pred CCCcHHHhc--cccceEeecCCCHHHHHHHHHHHHHh
Q 009856 387 GDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKK 421 (523)
Q Consensus 387 ~~l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~ 421 (523)
+.+++++++ ||+..+. .|+.++|..|++.++..
T Consensus 166 ~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 166 STLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT 200 (293)
T ss_dssp CC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG
T ss_pred ccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC
Confidence 999999996 8987776 57999999999988764
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=4.2e-25 Score=249.14 Aligned_cols=219 Identities=28% Similarity=0.445 Sum_probs=171.1
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc-c----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN-T----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 313 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~-~----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~ 313 (523)
..+...|++++|.+.+++.+..++..... . .....++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34567899999999999998876543211 1 112346678999999999999999999999999999999998764
Q ss_pred -chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCC
Q 009856 314 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 388 (523)
Q Consensus 314 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~ 388 (523)
+.++....+..+|..+.... ++||||||+|.++..+.... .......+++.|+..++ ....+++||+|||.++.
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 55566778899999987665 68999999999988775432 23355678888888876 34457899999999999
Q ss_pred CcHHHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 389 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 389 l~~al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
+++++++ ||+..|+|++|+.++|..||+.++..... ..+..+..++..+.||
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--------------------------~~~~~l~~la~~t~g~ 682 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--------------------------AKDVDLEFLAKMTNGF 682 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------------------------------CCCCSCSCGGGSSS
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC--------------------------CcccCHHHHHHhcccc
Confidence 9999999 99999999999999999999998865433 1112356678889999
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 009856 467 SGREIAKLMASVQAAVYA 484 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~ 484 (523)
||+||..+|+.+...+..
T Consensus 683 sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 683 SGADLTEICQRACKLAIR 700 (806)
T ss_dssp CCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999866555544
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=3.3e-21 Score=204.60 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=178.4
Q ss_pred CcccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC--CCeeEEecCCccc-
Q 009856 237 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAP- 313 (523)
Q Consensus 237 ~~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~--~~~~~v~~~~~~~- 313 (523)
....+...|++++|++.+++.+..++..+... ..|++++|||||||||||++|+++|..++ .+|+.++++.+..
T Consensus 28 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~---~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 28 ESGLAKQAASGLVGQENAREACGVIVELIKSK---KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp TTSCBCSEETTEESCHHHHHHHHHHHHHHHTT---CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred cccChhhchhhccCHHHHHHHHHHHHHHHHhC---CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 33456778999999999999998887766542 34668899999999999999999999999 9999999998765
Q ss_pred chhhHHHHHHHHHHHHH--hcCCceEEEEccchhhhhhccccc-------------------------------------
Q 009856 314 LGAQAVTKIHEIFDWAK--KSKKGLLLFIDEADAFLCERNSIH------------------------------------- 354 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~--~~~~~~vL~iDEid~l~~~~~~~~------------------------------------- 354 (523)
..++... +...|..+. ....|+||||||+|.+++.+....
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 3334444 888888772 223478999999998875442210
Q ss_pred ---------------------------------------CcH--------------------------------------
Q 009856 355 ---------------------------------------MSE-------------------------------------- 357 (523)
Q Consensus 355 ---------------------------------------~~~-------------------------------------- 357 (523)
.+.
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i 263 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQL 263 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC----------------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhh
Confidence 000
Q ss_pred -------------------------------------------HHHHHHHHHHHHhCCCCCCEEEEEeeCC---------
Q 009856 358 -------------------------------------------AQRSALNALLFRTGDQSRDIVLVLATNR--------- 385 (523)
Q Consensus 358 -------------------------------------------~~~~~l~~ll~~~~~~~~~v~iI~ttn~--------- 385 (523)
.....++.|+..++.++.+ +||++||.
T Consensus 264 ~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~ 342 (456)
T 2c9o_A 264 MKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTE 342 (456)
T ss_dssp -------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccc
Confidence 0012455666667766667 45555533
Q ss_pred ----CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH
Q 009856 386 ----PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 461 (523)
Q Consensus 386 ----~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 461 (523)
+..++|.++||| ..+.|++|+.++...++...+..... .++++.+..++.
T Consensus 343 ~~~~~~~l~~~i~sR~-~~~~~~~~~~~e~~~iL~~~~~~~~~-------------------------~~~~~~~~~i~~ 396 (456)
T 2c9o_A 343 DITSPHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKIRAQTEGI-------------------------NISEEALNHLGE 396 (456)
T ss_dssp SCEEETTCCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHHHHH
T ss_pred cccccccCChhHHhhc-ceeeCCCCCHHHHHHHHHHHHHHhCC-------------------------CCCHHHHHHHHH
Confidence 678999999999 45799999999999999998765433 478889999999
Q ss_pred HC-CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Q 009856 462 KT-EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 462 ~t-~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
.+ .| ++|....++..+...+...+...||.+++..++..+..
T Consensus 397 ~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 397 IGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 88 66 88888888887777777777789999999999988754
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=2.3e-21 Score=194.75 Aligned_cols=223 Identities=24% Similarity=0.294 Sum_probs=155.7
Q ss_pred CcccCHHHHHHHHHHHHHHhcch-------hcCCCCceEEEEcCCCCchHHHHHHHHHHh-------CCCeeEEecCCcc
Q 009856 247 DIILHPSLQRRIQHLAKATANTK-------IHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAMMTGGDVA 312 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~-------~~~~p~~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~v~~~~~~ 312 (523)
+++|++.+++.+..++....... ....+..++||+||||||||++|+++|+.+ ..+++.++++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999998877554221 124556689999999999999999999988 3489999988875
Q ss_pred c-chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC----
Q 009856 313 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 387 (523)
Q Consensus 313 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---- 387 (523)
. +.+.....+...|..+ .++||||||+|.+++.++....+.. .++.|+..+.....+++||++||.+.
T Consensus 112 ~~~~g~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~---~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA----MGGVLFIDEAYYLYRPDNERDYGQE---AIEILLQVMENNRDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH----TTSEEEEETGGGSCCCC---CCTHH---HHHHHHHHHHHCTTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc----CCCEEEEEChhhhccCCCcccccHH---HHHHHHHHHhcCCCCEEEEEeCChHHHHHH
Confidence 4 4445556667777665 3679999999999765544333333 44455555544566788999998653
Q ss_pred -CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC---
Q 009856 388 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--- 463 (523)
Q Consensus 388 -~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--- 463 (523)
.++|+|++||+.++.|++|+.+++..|+..++..... .++++.+..++...
T Consensus 185 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~-------------------------~~~~~~~~~l~~~~~~~ 239 (309)
T 3syl_A 185 FQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNY-------------------------QMTPEAETALRAYIGLR 239 (309)
T ss_dssp HHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTC-------------------------EECHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999987543 46888888887762
Q ss_pred ----CCCCHHHHHHHHHHHHHHH----HcCCCCccCHHHHHHHHHH
Q 009856 464 ----EGFSGREIAKLMASVQAAV----YARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 464 ----~G~sgrdI~~L~~~~~~a~----~~~~~~~it~e~~~~~l~~ 501 (523)
...++|++..++..+.... .......++.+++..+...
T Consensus 240 ~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~ 285 (309)
T 3syl_A 240 RNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEE 285 (309)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHH
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHH
Confidence 1224566666664333211 1123456777766654433
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=7.6e-21 Score=192.16 Aligned_cols=217 Identities=21% Similarity=0.293 Sum_probs=163.9
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 320 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~ 320 (523)
.+.+|++++|.+..+..+...+...... ..++.++||+||||||||++|+++|+.++.+++.++|+.+... .
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-----~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-----G 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH---CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-----H
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc---CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-----H
Confidence 4457899999999999988877655432 2344579999999999999999999999999999998876431 2
Q ss_pred HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC------C---------CCCCEEEEEeeCC
Q 009856 321 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------D---------QSRDIVLVLATNR 385 (523)
Q Consensus 321 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------~---------~~~~v~iI~ttn~ 385 (523)
.+...|.. ....+++|||||++.+ +...+..+..++.... . ...++++|++||.
T Consensus 79 ~l~~~l~~--~~~~~~~l~lDEi~~l---------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 79 DLAAILAN--SLEEGDILFIDEIHRL---------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp HHHHHHTT--TCCTTCEEEETTTTSC---------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred HHHHHHHH--hccCCCEEEEECCccc---------ccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 22233321 1345789999999986 3345556666665421 0 1135789999999
Q ss_pred CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCC
Q 009856 386 PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 465 (523)
Q Consensus 386 ~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 465 (523)
+..+++++.+||+.++.|++|+.+++..++..++..... .++++.+..++..+.|
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~G 202 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-------------------------RITEEAALEIGRRSRG 202 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-------------------------CCCHHHHHHHHHHSCS
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHccC
Confidence 999999999999889999999999999999998875433 4788999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
+++++..++..+...+.......|+.+++..++...
T Consensus 203 -~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 203 -TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp -CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 566888777655444444456689999998887653
No 34
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.86 E-value=1.6e-20 Score=213.95 Aligned_cols=207 Identities=16% Similarity=0.215 Sum_probs=144.5
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcc-hhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc------
Q 009856 245 NGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL------ 314 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~------ 314 (523)
+.+++|++.++..+...+.....+ ..+..|..++||+||||||||++|++||..+ +.+|+.++|+.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l 636 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL 636 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHH
Confidence 367999999999998888776543 2334556689999999999999999999998 789999999876541
Q ss_pred hhhHH---HHH-HHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--C------CCCCEEEEEe
Q 009856 315 GAQAV---TKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--D------QSRDIVLVLA 382 (523)
Q Consensus 315 ~~~~~---~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~------~~~~v~iI~t 382 (523)
.+... +.- ...|..+....+++||||||++.+ +...+..|..+++.-. . +..+++||+|
T Consensus 637 ~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 637 IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA---------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --------------CHHHHHHHCSSEEEEESSGGGS---------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred cCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc---------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 11000 111 123444445566899999999986 3344445555443211 0 2357889999
Q ss_pred eCC--------------------------CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhh
Q 009856 383 TNR--------------------------PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWG 436 (523)
Q Consensus 383 tn~--------------------------~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~ 436 (523)
||. ...+.|+|++||+.++.|++|+.+++..|+.+++..+.....
T Consensus 708 sn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~--------- 778 (854)
T 1qvr_A 708 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA--------- 778 (854)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH---------
T ss_pred cCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH---------
Confidence 997 235789999999999999999999999999999986543000
Q ss_pred hhhhhhhhhhhhccCCHHHHHHHHHHCC--CCCHHHHHHHHH
Q 009856 437 HLFKKQQQKITIKDLSDNVIQEAARKTE--GFSGREIAKLMA 476 (523)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~sgrdI~~L~~ 476 (523)
..++ ...++++.++.|+.++. .+..|+|+.++.
T Consensus 779 ------~~~~-~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~ 813 (854)
T 1qvr_A 779 ------EKRI-SLELTEAAKDFLAERGYDPVFGARPLRRVIQ 813 (854)
T ss_dssp ------TTTC-EEEECHHHHHHHHHHHCBTTTBTSTHHHHHH
T ss_pred ------hCCc-eEEECHHHHHHHHHcCCCCCCChHHHHHHHH
Confidence 0001 12589999999998754 446677777664
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=9.1e-21 Score=190.03 Aligned_cols=241 Identities=17% Similarity=0.271 Sum_probs=157.0
Q ss_pred CCcccCHHHHHHHHHHHHHHhc-c-----hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chh
Q 009856 246 GDIILHPSLQRRIQHLAKATAN-T-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 316 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~-~-----~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~ 316 (523)
.+++|++.++..+...+..... . .....++.++||+||||||||++|+++|..++.+++.++++.+.. .+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 5699999999999877654211 0 111234568999999999999999999999999999999987653 222
Q ss_pred hHHHHHHHHHHHH----HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC----------CCCCEEEEEe
Q 009856 317 QAVTKIHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD----------QSRDIVLVLA 382 (523)
Q Consensus 317 ~~~~~l~~~f~~a----~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~v~iI~t 382 (523)
+....+..++..+ .....++||||||+|.+.+.....+.........+.|+..++. ...+++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2233455555421 1112367999999999977654333222222234444444332 2346788888
Q ss_pred e----CCCCCCcHHHhccccceEeecCCCHHHHHHHHHH----HHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHH
Q 009856 383 T----NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 454 (523)
Q Consensus 383 t----n~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (523)
+ +.+..+++++.+||+.++.|++|+.+++..|+.. ++..+.. ... ..+.. ..++++
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~-------------~~~--~~~~~-~~~~~~ 238 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA-------------LMA--TEGVN-IAFTTD 238 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH-------------HHH--HTTCE-EEECHH
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH-------------HHH--hcCCe-eccCHH
Confidence 4 5677899999999998899999999999999984 3322111 000 00000 147899
Q ss_pred HHHHHHHHCC-------CCCHHHHHHHHHHHHHHHH--c--CCCC--ccCHHHHHHHHHHH
Q 009856 455 VIQEAARKTE-------GFSGREIAKLMASVQAAVY--A--RPDC--VLDSQLFREVVEYK 502 (523)
Q Consensus 455 ~l~~la~~t~-------G~sgrdI~~L~~~~~~a~~--~--~~~~--~it~e~~~~~l~~~ 502 (523)
.++.|+..+. +.++|++..++..+...+. . ..+. .||.+++..++...
T Consensus 239 a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 239 AVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 9999988762 3467777777754332211 1 1122 59999999887653
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.85 E-value=6.8e-21 Score=192.90 Aligned_cols=212 Identities=18% Similarity=0.255 Sum_probs=149.2
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHH
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV 319 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~ 319 (523)
..+.+|++++|++.+...+...+. .+.+++.+|++||||||||++|+++|+.++.+++.+++++.. .
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~-------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~------~ 86 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITS-------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK------I 86 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHH-------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC------H
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHH-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC------H
Confidence 345689999999999888877665 234445688899999999999999999999999999987643 2
Q ss_pred HHHHHHHHH-HHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhc
Q 009856 320 TKIHEIFDW-AKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD 395 (523)
Q Consensus 320 ~~l~~~f~~-a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~ 395 (523)
..+...+.. +... ..+.||||||+|.+.+ ...+..|..++.. ...+++||++||.+..+++++.+
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------~~~~~~L~~~le~---~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 87 DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------AESQRHLRSFMEA---YSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------HHHHHHHHHHHHH---HGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------HHHHHHHHHHHHh---CCCCcEEEEEeCCccccCHHHHh
Confidence 223332222 2221 2578999999998741 2345555555544 34567899999999999999999
Q ss_pred cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCH-HHHHHHHHHCCCCCHHHHHHH
Q 009856 396 RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD-NVIQEAARKTEGFSGREIAKL 474 (523)
Q Consensus 396 Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~la~~t~G~sgrdI~~L 474 (523)
|| .++.|++|+.+++..|+..++..... ........+++ +.+..++..+.| |++.+
T Consensus 156 R~-~~i~~~~~~~~e~~~il~~~~~~l~~------------------~~~~~~~~~~~~~~~~~l~~~~~g----d~R~a 212 (324)
T 3u61_B 156 RC-RVITFGQPTDEDKIEMMKQMIRRLTE------------------ICKHEGIAIADMKVVAALVKKNFP----DFRKT 212 (324)
T ss_dssp HS-EEEECCCCCHHHHHHHHHHHHHHHHH------------------HHHHHTCCBSCHHHHHHHHHHTCS----CTTHH
T ss_pred hC-cEEEeCCCCHHHHHHHHHHHHHHHHH------------------HHHHcCCCCCcHHHHHHHHHhCCC----CHHHH
Confidence 99 68999999999998888777655321 00001114566 899999999888 88888
Q ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 475 MASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 475 ~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
++.++.++ ....||.+++..++..
T Consensus 213 ~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 213 IGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHG---GGTCBCC---------
T ss_pred HHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 88888877 2346888888776554
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.85 E-value=2.4e-19 Score=169.73 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=150.0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcccch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~~ 315 (523)
.+..|++++|.+.....+...+.. ....+++|+||||||||+++++++..+ +.+++.++++.....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 82 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI- 82 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT--------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH-
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh-
Confidence 456788999999998888776642 122359999999999999999999886 355777777654321
Q ss_pred hhHHHHHHHHHHHHHh-----cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCc
Q 009856 316 AQAVTKIHEIFDWAKK-----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 390 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~-----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~ 390 (523)
..+...+..... ...+.+|||||+|.+.. .....+..++.. ...++++|++||.+..++
T Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~~~~~l~~~l~~---~~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 83 ----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------DAQAALRRTMEM---YSKSCRFILSCNYVSRII 146 (226)
T ss_dssp ----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------HHHHHHHHHHHH---TTTTEEEEEEESCGGGSC
T ss_pred ----HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------HHHHHHHHHHHh---cCCCCeEEEEeCChhhcC
Confidence 111222221111 24578999999998732 334445555443 456788999999999999
Q ss_pred HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 391 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 391 ~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+++.+||. .+.|++|+.++...++..++..... .++++.+..++..+.| +
T Consensus 147 ~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~g----~ 196 (226)
T 2chg_A 147 EPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV-------------------------KITEDGLEALIYISGG----D 196 (226)
T ss_dssp HHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHHHHHHHTT----C
T ss_pred HHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----C
Confidence 99999995 9999999999999999998876543 3688899999999888 6
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 471 IAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
++.+++.++.++... ..||.++++.++.
T Consensus 197 ~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 197 FRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 666666666666654 6899999999875
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.84 E-value=4.5e-20 Score=194.72 Aligned_cols=211 Identities=23% Similarity=0.303 Sum_probs=150.2
Q ss_pred ccccCCCcccCHHHH---HHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhh
Q 009856 241 AIKNNGDIILHPSLQ---RRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ 317 (523)
Q Consensus 241 ~~~~~~~vig~~~~~---~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~ 317 (523)
.+.+|++++|++.+. ..+...+.. . ...++||+||||||||++|++||+.++.+|+.+++....
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~---~-----~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~----- 87 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA---G-----HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG----- 87 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH---T-----CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-----
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc---C-----CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-----
Confidence 356889999999998 555554442 1 125799999999999999999999999999999875422
Q ss_pred HHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEee--CCCCCCcHH
Q 009856 318 AVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSA 392 (523)
Q Consensus 318 ~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~tt--n~~~~l~~a 392 (523)
...+...+..+.. ...++||||||+|.|.. ..+..|..++. ...++||++| |....++++
T Consensus 88 -~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------~~q~~LL~~le-----~~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 88 -VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------SQQDAFLPHIE-----DGTITFIGATTENPSFELNSA 152 (447)
T ss_dssp -HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------CCHHHHH-----TTSCEEEEEESSCGGGSSCHH
T ss_pred -HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------HHHHHHHHHHh-----cCceEEEecCCCCcccccCHH
Confidence 2334444444332 34578999999998732 23334444443 2456777766 555689999
Q ss_pred HhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHH
Q 009856 393 ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 472 (523)
Q Consensus 393 l~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 472 (523)
|++|| .++.|++|+.+++..++..++....... . .....++++.++.|+..+.| |++
T Consensus 153 L~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~-~-----------------~~~~~i~~~al~~L~~~~~G----d~R 209 (447)
T 3pvs_A 153 LLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGY-G-----------------GQDIVLPDETRRAIAELVNG----DAR 209 (447)
T ss_dssp HHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSS-T-----------------TSSEECCHHHHHHHHHHHCS----CHH
T ss_pred HhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhh-c-----------------cccCcCCHHHHHHHHHHCCC----CHH
Confidence 99999 5888999999999999999998643200 0 00114899999999999888 777
Q ss_pred HHHHHHHHHHHcCC-----CCccCHHHHHHHHHHH
Q 009856 473 KLMASVQAAVYARP-----DCVLDSQLFREVVEYK 502 (523)
Q Consensus 473 ~L~~~~~~a~~~~~-----~~~it~e~~~~~l~~~ 502 (523)
.+.+.++.++.... ...||.+++..++...
T Consensus 210 ~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 210 RALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 77777776665543 2479999999988643
No 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.83 E-value=3e-20 Score=209.55 Aligned_cols=237 Identities=25% Similarity=0.426 Sum_probs=181.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHH-Hhcch----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~- 313 (523)
.+..+|++|+|.+..++.+...+.. +..+. ....++.++||+||||||||++|++||..++.+++.++|.++..
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4567899999999999999888765 33322 13456779999999999999999999999999999999988754
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEeeCCCCCCcH
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 391 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~v~iI~ttn~~~~l~~ 391 (523)
..++....+..+|..+.... ++++||||+|.+++.+.... .......+..++..++ ....++++|++||.++.+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhcccccc-chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 55677778889999887654 78999999999988765432 3344555666666554 23457899999999999999
Q ss_pred HHhc--cccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 392 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 392 al~~--Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
++.+ ||+..+.++.|+.++|..|+..++..... ..+..+..++..+.||+++
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l--------------------------~~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--------------------------ADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC--------------------------CTTCCTHHHHHSCSSCCHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC--------------------------cccchhHHHHHhhcCcchH
Confidence 9998 99999999999999999999988766543 1222467889999999999
Q ss_pred HHHHHHHHHHHHHHcCC-----------------CCccCHHHHHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARP-----------------DCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~-----------------~~~it~e~~~~~l~~~~~ 504 (523)
++..++..+...+.... ...++.+++..++....+
T Consensus 410 dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCc
Confidence 99999864443332211 124566677777666544
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=6.5e-20 Score=181.17 Aligned_cols=205 Identities=23% Similarity=0.289 Sum_probs=138.9
Q ss_pred CCcccCHHHHHHHHH----HHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc--cchhhHH
Q 009856 246 GDIILHPSLQRRIQH----LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA--PLGAQAV 319 (523)
Q Consensus 246 ~~vig~~~~~~~l~~----~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~--~~~~~~~ 319 (523)
..++|.+.....+.. +...+... ...++.++||+||||||||++|+++|..++.+|+.+++++.. .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~--~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 568888766555555 33333221 234567899999999999999999999999999999886522 1223344
Q ss_pred HHHHHHHHHHHhcCCceEEEEccchhhhhhccc-ccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcH-HHhccc
Q 009856 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS-IHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS-AITDRI 397 (523)
Q Consensus 320 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~-al~~Rf 397 (523)
..+..+|..+.. ..+++|||||+|.+++.+.. ..........|..++........+++||+|||.++.+++ .+.+||
T Consensus 111 ~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 111 QAMKKIFDDAYK-SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 189 (272)
T ss_dssp HHHHHHHHHHHT-SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTS
T ss_pred HHHHHHHHHHHh-cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhccc
Confidence 567777877654 34789999999999765442 222333333333333222234557889999999888887 678899
Q ss_pred cceEeecCCCH-HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC--CHHHHHHH
Q 009856 398 DEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF--SGREIAKL 474 (523)
Q Consensus 398 ~~~i~~~~p~~-~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~--sgrdI~~L 474 (523)
+..+.+|+++. ++...++.. . . .++++.+..++..+.|+ +| +++.+
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~---~-~--------------------------~~~~~~~~~l~~~~~g~~~~g-~ir~l 238 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALEL---L-G--------------------------NFKDKERTTIAQQVKGKKVWI-GIKKL 238 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHH---H-T--------------------------CSCHHHHHHHHHHHTTSEEEE-CHHHH
T ss_pred ceEEcCCCccHHHHHHHHHHh---c-C--------------------------CCCHHHHHHHHHHhcCCCccc-cHHHH
Confidence 88888877766 443334332 1 1 26788999999999886 33 57777
Q ss_pred HHHHHHHHHc
Q 009856 475 MASVQAAVYA 484 (523)
Q Consensus 475 ~~~~~~a~~~ 484 (523)
++.++.+...
T Consensus 239 ~~~l~~a~~~ 248 (272)
T 1d2n_A 239 LMLIEMSLQM 248 (272)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhhh
Confidence 7777777654
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=9.8e-19 Score=180.32 Aligned_cols=230 Identities=15% Similarity=0.121 Sum_probs=160.5
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCCc
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGDV 311 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~~ 311 (523)
+...+++++|.+.....+...+.... ....+.+++|+||||||||++++++++.+ +.+++.++|...
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~----~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPAL----RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGT----SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHH----cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 34455889999998888876554321 12345679999999999999999999988 788899998764
Q ss_pred ccch-----------------h-hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 009856 312 APLG-----------------A-QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 373 (523)
Q Consensus 312 ~~~~-----------------~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 373 (523)
.... + .....+..++........++||||||+|.+...+ ..+..+..++......
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQEL 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhc
Confidence 3211 0 0112233444444334457899999999985321 1356677777665432
Q ss_pred --CCCEEEEEeeCCC---CCCcHHHhccccc-eEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhh
Q 009856 374 --SRDIVLVLATNRP---GDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 447 (523)
Q Consensus 374 --~~~v~iI~ttn~~---~~l~~al~~Rf~~-~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (523)
..++++|++||.+ ..+++.+.+||.. .+.|++|+.+++..|+..++..... .
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---~------------------- 220 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---P------------------- 220 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---T-------------------
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---C-------------------
Confidence 5678899999887 6889999999986 8999999999999999999875221 0
Q ss_pred hccCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 448 IKDLSDNVIQEAARKTE---GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 448 ~~~~~~~~l~~la~~t~---G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
..++++.+..++..+. | .++.+..++..+...+...+...|+.+++..++......
T Consensus 221 -~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 221 -GVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp -TTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 1256677888888876 6 555666666544444444456789999999998876443
No 42
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.81 E-value=1.7e-18 Score=165.75 Aligned_cols=209 Identities=21% Similarity=0.242 Sum_probs=145.3
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe--cC---------
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT--GG--------- 309 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~--~~--------- 309 (523)
.+..|++++|.+...+.+...+.. +..++.++|+||||||||++++.+++.++....... +.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 455678999999999888776653 233346999999999999999999998754321100 00
Q ss_pred -----Cccc---chhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 009856 310 -----DVAP---LGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 378 (523)
Q Consensus 310 -----~~~~---~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~ 378 (523)
++.. ........+..++.... ....+.+|||||+|.+. .. .++.++..+.....+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---------~~---~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RH---SFNALLKTLEEPPEHVK 158 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---------HH---HHHHHHHHHHSCCTTEE
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc---------HH---HHHHHHHHHhcCCCceE
Confidence 0000 01122233444443322 12246899999999862 22 33344444444566889
Q ss_pred EEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHH
Q 009856 379 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE 458 (523)
Q Consensus 379 iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (523)
+|++||.+..+++.+.+|+ ..+.|++|+.++...++..++..... .++++.+..
T Consensus 159 ~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~-------------------------~~~~~~~~~ 212 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI-------------------------AHEPRALQL 212 (250)
T ss_dssp EEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTC-------------------------CBCHHHHHH
T ss_pred EEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHH
Confidence 9999999999999999998 89999999999999999998876432 368889999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 459 AARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 459 la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
|+..+.| +++.+..++.. ++.. ....||.++++.++
T Consensus 213 l~~~~~G-~~~~~~~~~~~---~~~~-~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 213 LARAAEG-SLRDALSLTDQ---AIAS-GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHTT-CHHHHHHHHHH---HHTT-TTSSBCHHHHHHHS
T ss_pred HHHHcCC-CHHHHHHHHHH---HHhc-cCceecHHHHHHHh
Confidence 9999988 66677776653 3332 23489999998875
No 43
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.81 E-value=9e-19 Score=197.21 Aligned_cols=202 Identities=15% Similarity=0.217 Sum_probs=144.8
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchh-cCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKI-HQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTK 321 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~-~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~~~~ 321 (523)
.+++|++.++..+...+........ +..|..++||+||||||||++|+++|..+ +.+|+.++|+.+........+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 6799999999999888876654332 33455589999999999999999999998 7899999999876522222222
Q ss_pred HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEeeCCCCC-----
Q 009856 322 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPGD----- 388 (523)
Q Consensus 322 l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~ttn~~~~----- 388 (523)
+..+....+++||||||+|.+ +...+..|..+++.-. ....+++||+|||.+..
T Consensus 571 ----l~~~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 571 ----LTEKVRRKPYSVVLLDAIEKA---------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp ----CHHHHHHCSSSEEEEECGGGS---------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH
T ss_pred ----hhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH
Confidence 223334556889999999986 4466667777766521 13457899999997654
Q ss_pred -------CcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH
Q 009856 389 -------LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 461 (523)
Q Consensus 389 -------l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 461 (523)
+.|+|++||+.+|.|++|+.+++..|+..++..+..... ..+. ...+++++++.|+.
T Consensus 638 ~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~---------------~~~~-~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 638 MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLK---------------EQDL-SIELTDAAKAKVAE 701 (758)
T ss_dssp HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHH---------------TTTC-EEEECHHHHHHHHG
T ss_pred HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHH---------------hCCC-eEEECHHHHHHHHH
Confidence 889999999999999999999999999999877533000 0011 12589999999987
Q ss_pred HC--CCCCHHHHHHHHH
Q 009856 462 KT--EGFSGREIAKLMA 476 (523)
Q Consensus 462 ~t--~G~sgrdI~~L~~ 476 (523)
.. ..+..|+|+.++.
T Consensus 702 ~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 702 EGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp GGCCTTTTTTTHHHHHH
T ss_pred hCCCCCCCChHHHHHHH
Confidence 53 3345566666664
No 44
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.80 E-value=2.3e-19 Score=176.42 Aligned_cols=217 Identities=16% Similarity=0.218 Sum_probs=133.5
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC---CCeeEEecCCcccc--hhh
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPL--GAQ 317 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~~~~~~~~--~~~ 317 (523)
.+|++++|.+.....+...+...... ..++||+||||||||++|++++..++ .+|+.++|+.+... ...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHH
Confidence 46899999988888887766654332 24599999999999999999999874 68999999876431 111
Q ss_pred HHHHHHHHHHHHH-------hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEe
Q 009856 318 AVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLA 382 (523)
Q Consensus 318 ~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~t 382 (523)
..+.....|..+. ....+++|||||++.+ +...+..|..++.... ....++.||+|
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~a 147 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA---------PMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCA 147 (265)
T ss_dssp HHCCC---------CCCCHHHHTTTSEEEEESGGGS---------CHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEE
T ss_pred hcCCcccccccccccccchhhhcCCcEEEEechHhc---------CHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEe
Confidence 1111111111110 1123679999999987 3355666666665421 11246789999
Q ss_pred eCCC-------CCCcHHHhcccc-ceEeecCCCH--HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhh-ccC
Q 009856 383 TNRP-------GDLDSAITDRID-EVIEFPLPRE--EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITI-KDL 451 (523)
Q Consensus 383 tn~~-------~~l~~al~~Rf~-~~i~~~~p~~--~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 451 (523)
||.+ ..+.+.|.+||. ..+.+|++.. ++...++.+++..... ..+... ..+
T Consensus 148 tn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~------------------~~~~~~~~~~ 209 (265)
T 2bjv_A 148 TNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCR------------------EIKLPLFPGF 209 (265)
T ss_dssp ESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHH------------------HTTCSSCCCB
T ss_pred cCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHH------------------HhCCCcccCc
Confidence 9974 358899999995 3455555543 4566677777765432 111111 247
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 009856 452 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 495 (523)
Q Consensus 452 ~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~ 495 (523)
+++.+..|..+. |+| +++.|.+.++.++..+.+..|+.+++
T Consensus 210 ~~~a~~~L~~~~--~~g-n~reL~~~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 210 TERARETLLNYR--WPG-NIRELKNVVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp CHHHHHHHHHSC--CTT-HHHHHHHHHHHHHHHHCCSSSCBCCC
T ss_pred CHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHhCCCCcCcHHHc
Confidence 899999997764 333 78888877777766555566665554
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=6.1e-19 Score=179.10 Aligned_cols=238 Identities=14% Similarity=0.113 Sum_probs=158.0
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chhh-HH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQ-AV 319 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~~-~~ 319 (523)
.+.+++|++.+...+...+.. ..++||+||||||||++|+++|..++.+++.+++..... +.+. ..
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~----------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~ 94 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT----------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIY 94 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH----------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEE
T ss_pred hccceeCcHHHHHHHHHHHHc----------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceee
Confidence 458899999988877665442 135999999999999999999999999999988742111 0000 00
Q ss_pred HHHHHHHHHHHhcC--CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEeeCCCC--
Q 009856 320 TKIHEIFDWAKKSK--KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPG-- 387 (523)
Q Consensus 320 ~~l~~~f~~a~~~~--~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~ttn~~~-- 387 (523)
......|.+ ... .++||||||++.+ +...+..|...+.... ..+.+++||+|+|..+
T Consensus 95 ~~~~~~~~~--~~g~l~~~vl~iDEi~~~---------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~ 163 (331)
T 2r44_A 95 NQHKGNFEV--KKGPVFSNFILADEVNRS---------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQE 163 (331)
T ss_dssp ETTTTEEEE--EECTTCSSEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCS
T ss_pred cCCCCceEe--ccCcccccEEEEEccccC---------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCccc
Confidence 000000000 000 1269999999986 3345555655555421 1344678888888543
Q ss_pred ---CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC-
Q 009856 388 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT- 463 (523)
Q Consensus 388 ---~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t- 463 (523)
.+++++++||+..+.|++|+.+++..|+..++........... .....+.. .........++++.++.++...
T Consensus 164 ~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~~v~~~~~~~~~i~~~~~ 240 (331)
T 2r44_A 164 GTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKI--VSKNDVLE-IRNEINKVTISESLEKYIIELVF 240 (331)
T ss_dssp CCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCC--SCHHHHHH-HHHHHHTCBCCHHHHHHHHHHHH
T ss_pred CcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhcccc--CCHHHHHH-HHHHhccCCCCHHHHHHHHHHHH
Confidence 3899999999888999999999999999998865322100000 00000111 1111222357888888776542
Q ss_pred ------------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 464 ------------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 464 ------------------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
.|+|+|.+..++..+.+.+...+...++.+|+..++...+..
T Consensus 241 ~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 241 ATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 256999999999988888888788889999999999988753
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.80 E-value=7e-19 Score=176.67 Aligned_cols=208 Identities=15% Similarity=0.208 Sum_probs=145.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcc-hhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh--hHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA--QAV 319 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~--~~~ 319 (523)
..++|++.+.+.+...+...... ..+..|..++||+||||||||++|+++|..+ +.+++.++|+.+..... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 67899999999998877765432 2233455679999999999999999999998 56789998876543210 000
Q ss_pred -------H-HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEee
Q 009856 320 -------T-KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLAT 383 (523)
Q Consensus 320 -------~-~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~tt 383 (523)
+ .....+..+....++++|||||+|.+ +...+..|..++.... ....+++||+||
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA---------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred CCCCccccccccchHHHHHHhCCCeEEEEeChhhc---------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 0 00022333334456789999999987 4455666666665422 112477899999
Q ss_pred CC--------------------------CCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhh
Q 009856 384 NR--------------------------PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437 (523)
Q Consensus 384 n~--------------------------~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~ 437 (523)
|. ...++++|++||+.++.|++|+.+++..|+.+++..+.....
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~---------- 237 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA---------- 237 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH----------
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH----------
Confidence 98 446889999999999999999999999999999887543000
Q ss_pred hhhhhhhhhhhccCCHHHHHHHHHHCC--CCCHHHHHHHHHHH
Q 009856 438 LFKKQQQKITIKDLSDNVIQEAARKTE--GFSGREIAKLMASV 478 (523)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~la~~t~--G~sgrdI~~L~~~~ 478 (523)
..+. ...++++.+..|+.+.. .+++|+|+.++..+
T Consensus 238 -----~~~~-~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 238 -----EKRI-SLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp -----TTTC-EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred -----hCCc-EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 0000 12589999999998764 45677777777543
No 47
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.79 E-value=6.1e-19 Score=177.29 Aligned_cols=208 Identities=22% Similarity=0.268 Sum_probs=150.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPL 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~ 314 (523)
..+..|++++|++.....+...+.. + ...++||+||||||||++|+++++.+ +.+++.+++++....
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------K-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-------T-CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-------C-CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 3456789999999998887765431 2 22349999999999999999999986 345778887764321
Q ss_pred hhhHHHHHHHHHHHHH-hcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHH
Q 009856 315 GAQAVTKIHEIFDWAK-KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAI 393 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~-~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al 393 (523)
. .....+........ ...++.||||||+|.+.. ...+.++..+...+.+++||++||.+..+.+++
T Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 83 D-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp T-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred H-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 1 00111111110000 113468999999998732 234455666666677899999999999999999
Q ss_pred hccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHH
Q 009856 394 TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 473 (523)
Q Consensus 394 ~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 473 (523)
.+|| ..+.|++|+.+++..++..++..... .++++.+..++..+.| +++.
T Consensus 150 ~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~i~~~~l~~l~~~~~G----~~r~ 199 (319)
T 2chq_A 150 QSRC-AVFRFKPVPKEAMKKRLLEICEKEGV-------------------------KITEDGLEALIYISGG----DFRK 199 (319)
T ss_dssp HTTC-EEEECCCCCHHHHHHHHHHHHHTTCC-------------------------CBCHHHHHHHHHTTTT----CHHH
T ss_pred HhhC-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CHHH
Confidence 9999 59999999999999999998876543 4788999999998877 7777
Q ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 474 LMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 474 L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+.+.++.++.. ...||.+++..++.
T Consensus 200 ~~~~l~~~~~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 200 AINALQGAAAI--GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHHHHS--SSCBCHHHHHHHTT
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHC
Confidence 77777776664 34688887766554
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=2.2e-17 Score=168.00 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=157.1
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHH
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 321 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~ 321 (523)
..+|++++|++.+...+...+.... ..+.++.+++|+|||||||||+++++|..++.++...++..+.. + ..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~---~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-~----~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK---MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-Q----GD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH---HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-H----HH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH---hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-H----HH
Confidence 4578999999988887766554322 22445567999999999999999999999999988777654322 1 12
Q ss_pred HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC---------------CCCCEEEEEeeCCC
Q 009856 322 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---------------QSRDIVLVLATNRP 386 (523)
Q Consensus 322 l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------------~~~~v~iI~ttn~~ 386 (523)
+...+. ....+.|+||||++.+.+ .....+...+..... ....+.++.+++.+
T Consensus 93 l~~~~~---~~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~ 160 (334)
T 1in4_A 93 MAAILT---SLERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS 160 (334)
T ss_dssp HHHHHH---HCCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCG
T ss_pred HHHHHH---HccCCCEEEEcchhhcCH---------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc
Confidence 222222 223467999999998743 223334333322110 11246778899999
Q ss_pred CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 387 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 387 ~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
..+++++++||...+.|++|+.+++..++......... .++++.+..|+..+.|
T Consensus 161 ~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-------------------------~~~~~~~~~ia~~~~G- 214 (334)
T 1in4_A 161 GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-------------------------EIEDAAAEMIAKRSRG- 214 (334)
T ss_dssp GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------------------------CBCHHHHHHHHHTSTT-
T ss_pred ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CcCHHHHHHHHHhcCC-
Confidence 99999999999888999999999999999998765432 4788899999999988
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 467 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 467 sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
++|.+..++..+...+...+...||.+++..++...
T Consensus 215 ~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 215 TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 778888888766655555556789999999999874
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=1.7e-18 Score=176.79 Aligned_cols=209 Identities=18% Similarity=0.210 Sum_probs=145.3
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC------CCeeEEecCCccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG------LDYAMMTGGDVAP 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~------~~~~~v~~~~~~~ 313 (523)
..+..|++++|++.+.+.+...+. ...+.++||+||||||||++|++++..++ ..++.+++++...
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~--------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 102 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLK--------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG 102 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTT--------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHh--------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc
Confidence 345678999999998887766543 12223599999999999999999999864 3577777766432
Q ss_pred chhhHHHHHHHHHHH------------HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEE
Q 009856 314 LGAQAVTKIHEIFDW------------AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL 381 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~------------a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ 381 (523)
. .........|.. ......+.||||||+|.+. ...+..|..++.. ...++.||+
T Consensus 103 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~---------~~~~~~Ll~~le~---~~~~~~~il 168 (353)
T 1sxj_D 103 I--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT---------ADAQSALRRTMET---YSGVTRFCL 168 (353)
T ss_dssp H--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC---------HHHHHHHHHHHHH---TTTTEEEEE
T ss_pred h--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC---------HHHHHHHHHHHHh---cCCCceEEE
Confidence 1 111111111111 0012345799999999873 2334444444443 455678889
Q ss_pred eeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH
Q 009856 382 ATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 461 (523)
Q Consensus 382 ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 461 (523)
+||.+..+.+++.+|| ..+.|++|+.++...++...+..... .++++.+..|+.
T Consensus 169 ~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~i~~~~l~~l~~ 222 (353)
T 1sxj_D 169 ICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENV-------------------------KCDDGVLERILD 222 (353)
T ss_dssp EESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTC-------------------------CCCHHHHHHHHH
T ss_pred EeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCC-------------------------CCCHHHHHHHHH
Confidence 9999999999999999 58999999999999999988765433 478999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHcCCC----CccCHHHHHHHHH
Q 009856 462 KTEGFSGREIAKLMASVQAAVYARPD----CVLDSQLFREVVE 500 (523)
Q Consensus 462 ~t~G~sgrdI~~L~~~~~~a~~~~~~----~~it~e~~~~~l~ 500 (523)
.+.| +++.+++.++.++...+. ..||.+++..++.
T Consensus 223 ~~~G----~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 223 ISAG----DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HTSS----CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HcCC----CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 9988 555555555544432221 2799999988765
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.79 E-value=1.7e-18 Score=166.44 Aligned_cols=211 Identities=13% Similarity=0.146 Sum_probs=139.4
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC---CCeeEEecCCcccchh
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPLGA 316 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~~~~~~~~~~ 316 (523)
.+..+|+++++.+.....+..+...... .+..+++|+||||||||++|++++..++ .+++.+++.++.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASG-----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST 96 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHT-----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3457889999843223333333332222 2446799999999999999999999874 7788888876544221
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC-CC---CCcHH
Q 009856 317 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PG---DLDSA 392 (523)
Q Consensus 317 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~-~~---~l~~a 392 (523)
... . ....+.+|||||++.+... ......+..++..... ...+.+|++||. +. .+.+.
T Consensus 97 ~~~-------~---~~~~~~vliiDe~~~~~~~-------~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ALL-------E---GLEQFDLICIDDVDAVAGH-------PLWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp GGG-------T---TGGGSSEEEEETGGGGTTC-------HHHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCCHH
T ss_pred HHH-------H---hccCCCEEEEeccccccCC-------HHHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhhhh
Confidence 111 1 1233679999999987432 1123344444433221 122335555553 33 45689
Q ss_pred Hhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHH
Q 009856 393 ITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 470 (523)
Q Consensus 393 l~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 470 (523)
+.+||. .++.|++|+.+++..++..++..... .++++.++.++..+.| ++++
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~g-~~r~ 212 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-------------------------QLPEDVGRFLLNRMAR-DLRT 212 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-------------------------CCCHHHHHHHHHHTTT-CHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHccC-CHHH
Confidence 999996 89999999999999999999875433 4788999999999977 6667
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 471 IAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 471 I~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+..++..+...+.. ....||.+++..++.
T Consensus 213 l~~~l~~~~~~a~~-~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 213 LFDVLDRLDKASMV-HQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHH-HTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-hCCCCcHHHHHHHhh
Confidence 77766655544433 235799999998874
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=1.6e-18 Score=178.47 Aligned_cols=236 Identities=16% Similarity=0.241 Sum_probs=151.0
Q ss_pred CcccCHHHHHHHHHHHHHHhcc-h------hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc--chhh
Q 009856 247 DIILHPSLQRRIQHLAKATANT-K------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--LGAQ 317 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~-~------~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~--~~~~ 317 (523)
.|+|++.+++.+...+...... . ....++.++||+||||||||++|++||..++.||+.++|+.+.. +.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999988876432221 1 11135678999999999999999999999999999999988764 2222
Q ss_pred -HHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccCcH--H---HHHHHHHHHHHh------------------
Q 009856 318 -AVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSE--A---QRSALNALLFRT------------------ 370 (523)
Q Consensus 318 -~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~~~--~---~~~~l~~ll~~~------------------ 370 (523)
..+.+..+|..+. ....++||||||+|.+.+.+.+...+. . .+..|..+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 2445566665431 112368999999999987654432111 1 344455555410
Q ss_pred CCCCCCEEEEEeeCCC----------CC-----------------------------------CcHHHhccccceEeecC
Q 009856 371 GDQSRDIVLVLATNRP----------GD-----------------------------------LDSAITDRIDEVIEFPL 405 (523)
Q Consensus 371 ~~~~~~v~iI~ttn~~----------~~-----------------------------------l~~al~~Rf~~~i~~~~ 405 (523)
--...|++||+++|.. .. +.|+|++||+.++.|++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 0022355666666642 11 78999999999999999
Q ss_pred CCHHHHHHHHHH----HHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH--HCCCCCHHHHHHHHHHHH
Q 009856 406 PREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR--KTEGFSGREIAKLMASVQ 479 (523)
Q Consensus 406 p~~~er~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~--~t~G~sgrdI~~L~~~~~ 479 (523)
|+.+++..|+.. ++..+.. .+. ..+.. ..+++++++.|+. +...+..|+|++++..+.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~-------------~~~--~~~~~-l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~ 319 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQA-------------LFN--LEGVD-LEFRDEALDAIAKKAMARKTGARGLRSIVEAAL 319 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHH-------------HHH--TTTCE-EEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------HHH--hcCce-EEECHHHHHHHHHhhcCCccCchHHHHHHHHHH
Confidence 999999999987 4443321 000 00111 1478999999986 344556789999886444
Q ss_pred HHHHc-C--CCC----ccCHHHHHHH
Q 009856 480 AAVYA-R--PDC----VLDSQLFREV 498 (523)
Q Consensus 480 ~a~~~-~--~~~----~it~e~~~~~ 498 (523)
...+. - ... .||.+++++.
T Consensus 320 ~~~l~~~~~~~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 320 LDTMYDLPSMEDVEKVVIDESVIDGQ 345 (363)
T ss_dssp HHHHHSTTTCCCSEEEECHHHHTTCC
T ss_pred HHHHHhcccccCCceeEEcHHHHhCc
Confidence 33332 1 111 4676666543
No 52
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.79 E-value=1.6e-18 Score=175.45 Aligned_cols=224 Identities=17% Similarity=0.204 Sum_probs=140.4
Q ss_pred ccccccCCCcc-cCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-
Q 009856 239 VEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP- 313 (523)
Q Consensus 239 ~~~~~~~~~vi-g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~- 313 (523)
..+..+|++++ |+.. ...+..+......+ +..+.+++|+||||||||++|++++..+ +.+++++++..+..
T Consensus 4 l~~~~~f~~fv~g~~~-~~a~~~~~~~~~~~---~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLAYEVVKEALENL---GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHHHHHHHHHHHTT---TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCCCCcccCCCCCcH-HHHHHHHHHHHhCc---CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 35677899998 4332 22232222222221 2234679999999999999999999998 89999998876532
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC---CCc
Q 009856 314 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---DLD 390 (523)
Q Consensus 314 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---~l~ 390 (523)
+...........|... ...+.+|||||++.+.... ..+..+..++.... ..+..+||++++.+. .++
T Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~-~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNM--YKSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHTCHHHHHHH--HHTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcCcHHHHHHH--hcCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHH-HCCCeEEEEecCChHHHHHhh
Confidence 1111111111122221 1236799999999975321 22333333333221 122344555555554 689
Q ss_pred HHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCH
Q 009856 391 SAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 468 (523)
Q Consensus 391 ~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 468 (523)
+++.+||. .++.|++ +.+++..|+..++..... .++++.++.|+..+ | +.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-------------------------~l~~~~l~~l~~~~-g-~~ 201 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-------------------------ELRKEVIDYLLENT-K-NV 201 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-------------------------CCCHHHHHHHHHHC-S-SH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHhC-C-CH
Confidence 99999996 6789999 999999999999876433 47899999999999 6 55
Q ss_pred HHHHHHHHHHHHH---HH-cCCCCcc-CHHHHHHHHHHHHH
Q 009856 469 REIAKLMASVQAA---VY-ARPDCVL-DSQLFREVVEYKVE 504 (523)
Q Consensus 469 rdI~~L~~~~~~a---~~-~~~~~~i-t~e~~~~~l~~~~~ 504 (523)
|++..++..+... ++ ......| |.+++.+++..+..
T Consensus 202 r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 202 REIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 5555555433332 00 0122457 88888888876643
No 53
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=1.2e-18 Score=188.50 Aligned_cols=228 Identities=19% Similarity=0.228 Sum_probs=144.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc----------ch
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 315 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------~~ 315 (523)
++++|.+.++..+...+....... ..+..+++|+||||||||++|+++|..++.++..++++.+.. +.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTK--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSS--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcc--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHh
Confidence 679999999999876544322111 125568999999999999999999999999999998876432 11
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC---------------CCCCEEEE
Q 009856 316 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---------------QSRDIVLV 380 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------------~~~~v~iI 380 (523)
+...+.+...|..+.. .+.||||||+|.+.+.... .....++..++. +..+++||
T Consensus 159 g~~~~~~~~~~~~a~~--~~~vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 159 GAMPGRIIQGMKKAGK--LNPVFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp -----CHHHHHHTTCS--SSEEEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred ccCchHHHHHHHHhhc--cCCEEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 2223344445544432 2359999999998654221 123334444321 11578999
Q ss_pred EeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHH
Q 009856 381 LATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA 460 (523)
Q Consensus 381 ~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 460 (523)
+|||.++.++++|++|| .+|.|++|+.+++..|+..++.......... ......++++.+..++
T Consensus 229 ~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~---------------~~~~i~i~~~~l~~l~ 292 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGL---------------KKSNLQLRDQAILDII 292 (543)
T ss_dssp EECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTC---------------CGGGCEECHHHHHHHH
T ss_pred eccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCC---------------CcccccCCHHHHHHHH
Confidence 99999999999999999 5899999999999999998874321100000 0001146888999987
Q ss_pred HHCC-CCCHHHHHHHHHHHHHHH----HcC--CCCccCHHHHHHHHHH
Q 009856 461 RKTE-GFSGREIAKLMASVQAAV----YAR--PDCVLDSQLFREVVEY 501 (523)
Q Consensus 461 ~~t~-G~sgrdI~~L~~~~~~a~----~~~--~~~~it~e~~~~~l~~ 501 (523)
..+. ....|+++..+..+...+ ... ....||.+++..++..
T Consensus 293 ~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 293 RYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 6433 345567766554333222 222 2246899998887754
No 54
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.78 E-value=6.9e-19 Score=176.79 Aligned_cols=210 Identities=19% Similarity=0.256 Sum_probs=142.8
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccc--hhhHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQAVT 320 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~--~~~~~~ 320 (523)
++++|.+.....+...+..+... ..+|||+||||||||++|++++..+ +.||+.++|+.+... ..+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhCC------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 46899988888888777665432 2359999999999999999999976 678999999876531 111110
Q ss_pred -----------HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEE
Q 009856 321 -----------KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVL 381 (523)
Q Consensus 321 -----------~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~ 381 (523)
.....|..+ .+++|||||++.+ +...+..|..+++... ....++.||+
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a----~~g~L~LDEi~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEA----DGGTLFLDEIGDI---------SPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp CCSSCCC---CCCCCHHHHH----TTSEEEEESCTTC---------CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred ccccccCchhhhhcCHHHhc----CCCEEEEeccccC---------CHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 011223222 2579999999987 3455666666665421 1134688999
Q ss_pred eeCCC-------CCCcHHHhccccceEeecCCCH----HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 382 ATNRP-------GDLDSAITDRIDEVIEFPLPRE----EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 382 ttn~~-------~~l~~al~~Rf~~~i~~~~p~~----~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
|||.+ ..+++.|.+||. ++.+..|+. ++...++.+|+..+.. ..+.....
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~------------------~~~~~~~~ 203 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAE------------------RNRKVVKG 203 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHH------------------HTTCCCCC
T ss_pred ecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHH------------------HhccCccC
Confidence 99975 357888999984 444444443 4556688888776533 11111225
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 009856 451 LSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFR 496 (523)
Q Consensus 451 ~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~ 496 (523)
++++.+..+..++ |+| +++.|.+.++.++..+.+..|+.+++.
T Consensus 204 ~s~~a~~~L~~~~--wpG-nvReL~~~l~~~~~~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 204 FTPQAMDLLIHYD--WPG-NIRELENAIERAVVLLTGEYISERELP 246 (304)
T ss_dssp BCHHHHHHHHHCC--CSS-HHHHHHHHHHHHHHHCCSSSBCGGGSC
T ss_pred CCHHHHHHHHcCC--CCC-CHHHHHHHHHHHHHhCCCCcccHHhhh
Confidence 8999999998875 333 889999888888887777778777664
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=7e-18 Score=174.21 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=155.0
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----------CCCeeEEecCC
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----------GLDYAMMTGGD 310 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----------~~~~~~v~~~~ 310 (523)
...+++++|.+...+.+...+..... +.++++++|+||||||||++|+++++.+ +.+++.++|..
T Consensus 16 ~~~p~~l~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 16 LSVFKEIPFREDILRDAAIAIRYFVK----NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp HHHCSSCTTCHHHHHHHHHHHHHHHT----TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 33448899999999988877665433 2344689999999999999999999987 88999998765
Q ss_pred cc-cch---hh----------------HHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHH-HHHHHHH
Q 009856 311 VA-PLG---AQ----------------AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA-LNALLFR 369 (523)
Q Consensus 311 ~~-~~~---~~----------------~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~-l~~ll~~ 369 (523)
.. ... .. ....+..++.... .. +.||||||+|.+..... ... +..++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~vlilDEi~~l~~~~~--------~~~~l~~l~~~ 161 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NI-RAIIYLDEVDTLVKRRG--------GDIVLYQLLRS 161 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SS-CEEEEEETTHHHHHSTT--------SHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cC-CCEEEEECHHHhccCCC--------CceeHHHHhcC
Confidence 43 100 00 0112233333332 22 23999999999854210 233 4555433
Q ss_pred hCCCCCCEEEEEeeCCC---CCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhh
Q 009856 370 TGDQSRDIVLVLATNRP---GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 446 (523)
Q Consensus 370 ~~~~~~~v~iI~ttn~~---~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (523)
. .++.||++||.+ ..+++.+.+||...+.|++|+.++...|+..++.....
T Consensus 162 ~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~---------------------- 215 (384)
T 2qby_B 162 D----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI---------------------- 215 (384)
T ss_dssp S----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC----------------------
T ss_pred C----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc----------------------
Confidence 2 688999999887 67899999999889999999999999999998864211
Q ss_pred hhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcC-CCCccCHHHHHHHHHHHHH
Q 009856 447 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR-PDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 447 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~-~~~~it~e~~~~~l~~~~~ 504 (523)
...++++.+..++..+.+.+| +++.+++.++.++... +...|+.+++..++.....
T Consensus 216 -~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 216 -KGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp -TTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH
T ss_pred -cCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc
Confidence 013677888889888873222 6676666666555443 3468999999999988754
No 56
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=4.2e-18 Score=171.72 Aligned_cols=204 Identities=23% Similarity=0.329 Sum_probs=143.8
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC-----CCeeEEecCCcccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTGGDVAPL 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~-----~~~~~v~~~~~~~~ 314 (523)
..+..|++++|++.....+...+.. + .+.++||+||||||||++|+++++.+. .+++.+++++...
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 89 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-------G-SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG- 89 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-------T-CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-------C-CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-
Confidence 3456789999999999988876653 1 223599999999999999999999863 2366777654321
Q ss_pred hhhHHHHHHHHHH-HHHh----cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCC
Q 009856 315 GAQAVTKIHEIFD-WAKK----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 315 ~~~~~~~l~~~f~-~a~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l 389 (523)
...+...+. .+.. ...+.||||||+|.+. ......|..++. ..+.+++||++||.+..+
T Consensus 90 ----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L~~~le---~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 90 ----INVIREKVKEFARTKPIGGASFKIIFLDEADALT---------QDAQQALRRTME---MFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp ----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC---------HHHHHHHHHHHH---HTTTTEEEEEEESCGGGS
T ss_pred ----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC---------HHHHHHHHHHHH---hcCCCCeEEEEeCCcccc
Confidence 111111111 1111 1347899999999873 233444444443 345678899999999999
Q ss_pred cHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 390 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+++.+|| ..+.|++|+.++...++..++..... .++++.+..|+..+.|
T Consensus 154 ~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~g---- 203 (327)
T 1iqp_A 154 IEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGL-------------------------ELTEEGLQAILYIAEG---- 203 (327)
T ss_dssp CHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTC-------------------------EECHHHHHHHHHHHTT----
T ss_pred CHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHCCC----
Confidence 99999999 48999999999999999988875433 3688899999999888
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
+++.+.+.++.++... ..+|.+++..++.
T Consensus 204 ~~r~~~~~l~~~~~~~--~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 204 DMRRAINILQAAAALD--KKITDENVFMVAS 232 (327)
T ss_dssp CHHHHHHHHHHHHTTC--SEECHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcC--CCCCHHHHHHHHC
Confidence 6666666666555432 3566666655443
No 57
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=8.6e-19 Score=188.78 Aligned_cols=220 Identities=19% Similarity=0.243 Sum_probs=147.9
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcch---------hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTK---------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 310 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~---------~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~ 310 (523)
..+.+|++++|++...+.+...+....... .+.++++++||+||||||||++|+++|+.++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345688999999999999988776533211 11135678999999999999999999999999999999987
Q ss_pred cccch--hhHHH------HHHHHHHHH----HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 009856 311 VAPLG--AQAVT------KIHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 378 (523)
Q Consensus 311 ~~~~~--~~~~~------~l~~~f~~a----~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~ 378 (523)
..... ..... .+...|..+ .....++||||||+|.+..... .....|..++.. ....++
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------~~l~~L~~~l~~---~~~~iI 183 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------GGVGQLAQFCRK---TSTPLI 183 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------THHHHHHHHHHH---CSSCEE
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------HHHHHHHHHHHh---cCCCEE
Confidence 65411 00000 011222211 1124578999999999864321 112334444433 223333
Q ss_pred EEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHH
Q 009856 379 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE 458 (523)
Q Consensus 379 iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (523)
+|+++.....+. .+.+|+ ..+.|++|+.+++..++...+..... .++++.+..
T Consensus 184 li~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~-------------------------~i~~~~l~~ 236 (516)
T 1sxj_A 184 LICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKF-------------------------KLDPNVIDR 236 (516)
T ss_dssp EEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CCCTTHHHH
T ss_pred EEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHH
Confidence 333333333443 455565 79999999999999999888766443 367778999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 459 AARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 459 la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
|+..+.| |++.+++.++.++.. ...|+.+++..++..
T Consensus 237 la~~s~G----diR~~i~~L~~~~~~--~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 237 LIQTTRG----DIRQVINLLSTISTT--TKTINHENINEISKA 273 (516)
T ss_dssp HHHHTTT----CHHHHHHHHTHHHHH--SSCCCTTHHHHHHHH
T ss_pred HHHHcCC----cHHHHHHHHHHHHhc--CCCCchHHHHHHHHh
Confidence 9999988 888888888877664 357888888877764
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.77 E-value=1.2e-17 Score=170.43 Aligned_cols=244 Identities=16% Similarity=0.175 Sum_probs=150.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-------CeeEEecCCcc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-------DYAMMTGGDVA 312 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-------~~~~v~~~~~~ 312 (523)
.+..+|++++|++.++..+.... ... ...++||+||||||||++|+++|..++. +| +|....
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~---~~~-----~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~ 86 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA---VDP-----GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVE 86 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---HCG-----GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGG
T ss_pred CCCCCchhccChHHHHHHHHHHh---hCC-----CCceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccc
Confidence 45678999999998776543221 111 1235999999999999999999998863 22 121110
Q ss_pred c-----------------------c---hhhHHHH--HHHHHHHHH--------hcCCceEEEEccchhhhhhcccccCc
Q 009856 313 P-----------------------L---GAQAVTK--IHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMS 356 (523)
Q Consensus 313 ~-----------------------~---~~~~~~~--l~~~f~~a~--------~~~~~~vL~iDEid~l~~~~~~~~~~ 356 (523)
. . .....+. +...+.... ....+++|||||++.+ +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---------~ 157 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLL---------E 157 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS---------C
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhC---------C
Confidence 0 0 0011100 111121110 0112679999999987 3
Q ss_pred HHHHHHHHHHHHH----hCC------CCCCEEEEEeeCCCC-CCcHHHhccccceEeecCC-CHHHHHHHHHHHHHhhcc
Q 009856 357 EAQRSALNALLFR----TGD------QSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLP-REEERFKLLKLYLKKYLC 424 (523)
Q Consensus 357 ~~~~~~l~~ll~~----~~~------~~~~v~iI~ttn~~~-~l~~al~~Rf~~~i~~~~p-~~~er~~il~~~l~~~~~ 424 (523)
...+..|..++.. +.. ...+++||+|+|..+ .++++|++||+..+.+++| +.+++..|+...+.....
T Consensus 158 ~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~ 237 (350)
T 1g8p_A 158 DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD 237 (350)
T ss_dssp HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC
Confidence 3445556565554 111 123789999999754 8999999999888999999 567777898876442110
Q ss_pred CCCCCCCchhhh-------hhhhhhhhhhhhccCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 009856 425 SDEGDSSSLKWG-------HLFKKQQQKITIKDLSDNVIQEAARKTEG---FSGREIAKLMASVQAAVYARPDCVLDSQL 494 (523)
Q Consensus 425 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~la~~t~G---~sgrdI~~L~~~~~~a~~~~~~~~it~e~ 494 (523)
.......|. ..............++++.+..|+..+.| -++|.+..++..+...+...+...|+.++
T Consensus 238 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~ 314 (350)
T 1g8p_A 238 ---PKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDH 314 (350)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHH
T ss_pred ---chhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHH
Confidence 000000000 00000001111126899999998877543 26789999998888888777778899999
Q ss_pred HHHHHHHHHHhh
Q 009856 495 FREVVEYKVEEH 506 (523)
Q Consensus 495 ~~~~l~~~~~~~ 506 (523)
+..++.......
T Consensus 315 v~~a~~~~l~~r 326 (350)
T 1g8p_A 315 LKRVATMALSHR 326 (350)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHhhc
Confidence 999999876543
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=1.3e-17 Score=171.54 Aligned_cols=205 Identities=20% Similarity=0.212 Sum_probs=146.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+..|++++|++.....+...+.. +..++.+||+||||||||++|+++++.+++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3456789999999999888876643 2334468999999999999999999988652
Q ss_pred -------eeEEecCCcccchhhHHHHHHHHHHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 009856 303 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 372 (523)
Q Consensus 303 -------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 372 (523)
++.++++.. .....+..++..+.. ...+.||||||+|.+. .. .++.++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------~~---~~~~Ll~~le~ 145 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASR-----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RH---SFNALLKTLEE 145 (373)
T ss_dssp HTSCCSSCEEEETTCS-----CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC---------HH---HHHHHHHHHHS
T ss_pred hccCCCceEEeccccc-----CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc---------HH---HHHHHHHHHhc
Confidence 222222110 011223444444332 2346799999999872 22 34445555555
Q ss_pred CCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 373 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 373 ~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.+.++++|++|+.+..+.+.+.+|+ ..+.|++|+.++...++..++..... .++
T Consensus 146 ~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~-------------------------~~~ 199 (373)
T 1jr3_A 146 PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI-------------------------AHE 199 (373)
T ss_dssp CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBC
T ss_pred CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 6778999999999999999999999 89999999999999999999876543 468
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 009856 453 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 499 (523)
Q Consensus 453 ~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l 499 (523)
++.+..++..+.| +++.+..++..+ ..+. ...||.+++..++
T Consensus 200 ~~a~~~l~~~~~G-~~r~~~~~l~~~--~~~~--~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 200 PRALQLLARAAEG-SLRDALSLTDQA--IASG--DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHSSS-CHHHHHHHHHHH--HHHT--TTCBCHHHHHHHT
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHH--HHhc--CCcccHHHHHHHh
Confidence 8899999999977 666666666432 2233 3568888887664
No 60
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=1.8e-17 Score=174.90 Aligned_cols=223 Identities=15% Similarity=0.177 Sum_probs=147.0
Q ss_pred cccccccCCCcc-cCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCc
Q 009856 238 PVEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDV 311 (523)
Q Consensus 238 ~~~~~~~~~~vi-g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~ 311 (523)
...+..+|++++ |..... .+..+......+ +. +.+++||||||||||++|+++++.+ +.+++++++..+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~---~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKHP---GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH-HHHHHHHHHHST---TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCCCCChhhcCCCCchHH-HHHHHHHHHhCC---CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 356777999998 544332 333333222222 11 4579999999999999999999988 788888887654
Q ss_pred cc-chhhHHHHHHHHHHHHHhcC-CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC-CCC
Q 009856 312 AP-LGAQAVTKIHEIFDWAKKSK-KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PGD 388 (523)
Q Consensus 312 ~~-~~~~~~~~l~~~f~~a~~~~-~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~-~~~ 388 (523)
.. +...........|.. ... .+.||||||++.+... ...+..+..++..+. ..+. .||++|+. +..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~vL~IDEi~~l~~~-------~~~q~~l~~~l~~l~-~~~~-~iIitt~~~~~~ 240 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFRE--KYRKKVDILLIDDVQFLIGK-------TGVQTELFHTFNELH-DSGK-QIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHTTCHHHHHH--HHTTTCSEEEEECGGGGSSC-------HHHHHHHHHHHHHHH-TTTC-EEEEEESSCGGG
T ss_pred HHHHHHHHHcccHHHHHH--HhcCCCCEEEEeCcccccCC-------hHHHHHHHHHHHHHH-HCCC-eEEEEECCCHHH
Confidence 22 110000000111211 223 4689999999998532 122333434433322 1223 45555554 443
Q ss_pred ---CcHHHhcccc--ceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 389 ---LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 389 ---l~~al~~Rf~--~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
+++.+.+||. .++.|++|+.+++..|+..++..... .++++.+..|+..+
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-------------------------~i~~e~l~~la~~~ 295 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-------------------------ELPEEVLNFVAENV 295 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-------------------------CCCTTHHHHHHHHC
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhc
Confidence 8899999996 78999999999999999998875433 36778899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 464 EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 464 ~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
.| ++|++..++..+...+...+ ..||.+++..++.+..
T Consensus 296 ~g-n~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 296 DD-NLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred CC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 87 77788887776665554433 4799999999988765
No 61
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=1.1e-17 Score=168.47 Aligned_cols=204 Identities=17% Similarity=0.243 Sum_probs=146.4
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCcccch
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~~~ 315 (523)
.+..|++++|++.....+...+.. +.+ +++||+||||||||++|+++++.+ +.+++.+++++...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 85 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG-- 85 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS--
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC--
Confidence 456789999999998888776541 222 349999999999999999999986 34577777765322
Q ss_pred hhHHHHHHHHHHHHHh------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCC
Q 009856 316 AQAVTKIHEIFDWAKK------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 316 ~~~~~~l~~~f~~a~~------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l 389 (523)
...+...+..... ..++.||||||+|.+.. .....|..++ ...+.+++||++||.+..+
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~l---e~~~~~~~~il~~~~~~~l 150 (323)
T 1sxj_B 86 ---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------GAQQALRRTM---ELYSNSTRFAFACNQSNKI 150 (323)
T ss_dssp ---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------HHHHTTHHHH---HHTTTTEEEEEEESCGGGS
T ss_pred ---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------HHHHHHHHHH---hccCCCceEEEEeCChhhc
Confidence 2233333333221 22368999999998732 3333343443 3355678999999999999
Q ss_pred cHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 390 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+.+.+|| ..+.|++|+.++...++..++..... .++++.+..++..+.|
T Consensus 151 ~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~G---- 200 (323)
T 1sxj_B 151 IEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDV-------------------------KYTNDGLEAIIFTAEG---- 200 (323)
T ss_dssp CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHHHHHHHTT----
T ss_pred hhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----
Confidence 99999999 59999999999999999998876443 3688899999999988
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
+++.+++.++..+... ..+|.+++..++..
T Consensus 201 ~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 201 DMRQAINNLQSTVAGH--GLVNADNVFKIVDS 230 (323)
T ss_dssp CHHHHHHHHHHHHHHH--SSBCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhcC--CCcCHHHHHHHHCC
Confidence 5555555555544432 46888888877653
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=5.8e-18 Score=175.08 Aligned_cols=238 Identities=16% Similarity=0.215 Sum_probs=144.3
Q ss_pred CCcccCHHHHHHHHHHHH----HHhcc------------------hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe
Q 009856 246 GDIILHPSLQRRIQHLAK----ATANT------------------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY 303 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~----~~~~~------------------~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~ 303 (523)
+.|+|++.+++.+...+. ..... .....+..++||+||||||||++|+++|..++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 468999999999987662 11110 01123456899999999999999999999999999
Q ss_pred eEEecCCccc--c-hhhHHHHHHHHHHHHH---hcCCceEEEEccchhhhhhcccccC-----cHHHHHHHHHHHHHhC-
Q 009856 304 AMMTGGDVAP--L-GAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHM-----SEAQRSALNALLFRTG- 371 (523)
Q Consensus 304 ~~v~~~~~~~--~-~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~~~~~~~-----~~~~~~~l~~ll~~~~- 371 (523)
+.++++.+.. + +......+...+..+. ....++||||||+|.+...+..... ....+..|..+++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 9999987653 2 2222233444443221 1224689999999998765332111 1113444555554210
Q ss_pred -----------------CCCCCEEEEEeeCC-----------------------------------------CCCCcHHH
Q 009856 372 -----------------DQSRDIVLVLATNR-----------------------------------------PGDLDSAI 393 (523)
Q Consensus 372 -----------------~~~~~v~iI~ttn~-----------------------------------------~~~l~~al 393 (523)
-...++++|+++|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 01245678888762 11367999
Q ss_pred hccccceEeecCCCHHHHHHHHHH----HHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCC--CCC
Q 009856 394 TDRIDEVIEFPLPREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GFS 467 (523)
Q Consensus 394 ~~Rf~~~i~~~~p~~~er~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~s 467 (523)
.+||+.++.|++++.++...|+.. ++..+.. .+. ..+.. ..++++.+..|+.... +..
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~-------------~~~--~~~~~-~~~~~~a~~~l~~~~~~~~~~ 324 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQ-------------LFK--MDEVD-LIFEEEAIKEIAQLALERKTG 324 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH-------------HHH--TTTCE-EEECHHHHHHHHHHHHHTTCT
T ss_pred hcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHH-------------HHh--hcCce-EEECHHHHHHHHHHhcccccC
Confidence 999999999999999999999973 3332211 000 00001 1478999999988743 246
Q ss_pred HHHHHHHHHHHHHHHHcC------CCCccCHHHHHHHH
Q 009856 468 GREIAKLMASVQAAVYAR------PDCVLDSQLFREVV 499 (523)
Q Consensus 468 grdI~~L~~~~~~a~~~~------~~~~it~e~~~~~l 499 (523)
.|+++.++..+...++.. ....||.+++..+.
T Consensus 325 ~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 325 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 778888775444333221 11258888887643
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=9.8e-18 Score=188.85 Aligned_cols=202 Identities=16% Similarity=0.234 Sum_probs=144.4
Q ss_pred CCcccCHHHHHHHHHHHHHHhcc-hhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc-----------
Q 009856 246 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------- 313 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~----------- 313 (523)
..++|++.++..+...+.....+ ..+..|..++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 57899999999988877655533 233456668999999999999999999999999999999887532
Q ss_pred ---chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEe
Q 009856 314 ---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLA 382 (523)
Q Consensus 314 ---~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v~iI~t 382 (523)
.+.+..+.+.+.+ ...+++||||||+|.+ ++.....|..+++.-. .+..+++||+|
T Consensus 538 ~g~~g~~~~~~l~~~~----~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAV----IKHPHAVLLLDEIEKA---------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp SCSHHHHHTTHHHHHH----HHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred CCCcCccccchHHHHH----HhCCCcEEEEeCcccc---------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 1111111222222 3456899999999986 4455555655555321 01357899999
Q ss_pred eCCCC-------------------------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhh
Q 009856 383 TNRPG-------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437 (523)
Q Consensus 383 tn~~~-------------------------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~ 437 (523)
||.+. .++|+|++||+.+|.|++|+.+++..|+..++.......
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~----------- 673 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL----------- 673 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH-----------
Confidence 99754 678999999999999999999999999999998653200
Q ss_pred hhhhhhhhhhhccCCHHHHHHHHHHC--CCCCHHHHHHHHH
Q 009856 438 LFKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMA 476 (523)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~ 476 (523)
. ..++ ...++++.++.|+... .+++.|++..++.
T Consensus 674 --~--~~~~-~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~ 709 (758)
T 1r6b_X 674 --D--QKGV-SLEVSQEARNWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_dssp --H--HTTE-EEEECHHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred --H--HCCc-EEEeCHHHHHHHHHhCCCcCCCchHHHHHHH
Confidence 0 0001 1247899999998753 3456778888775
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.75 E-value=1.2e-16 Score=164.94 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=154.7
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEecCCcccc--
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPL-- 314 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~~~~~~~-- 314 (523)
+...+++++|.+.....+...+........ +.+++++|+||||||||+++++++..+ +.+++.++|......
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~--~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCC--CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 344558899999998888877665433211 112379999999999999999999998 567888887664321
Q ss_pred ----------------hhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCC----
Q 009856 315 ----------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS---- 374 (523)
Q Consensus 315 ----------------~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~---- 374 (523)
+.........+.........+.||||||++.+ +. ..+..++..+....
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------~~---~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------AP---DILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------CH---HHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------ch---HHHHHHHHHHHhCCCCCc
Confidence 00111112222223333445789999999986 22 23444444443211
Q ss_pred CCEEEEEeeCCC---CCCcHHHhccccc-eEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 375 RDIVLVLATNRP---GDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 375 ~~v~iI~ttn~~---~~l~~al~~Rf~~-~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
.++.||++||.+ ..+++.+.+||.. .+.|++++.++...++...+..... ...
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-----------------------~~~ 214 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-----------------------EGS 214 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-----------------------TTS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-----------------------CCC
Confidence 478999999987 6789999999975 8999999999999999998875321 013
Q ss_pred CCHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 451 LSDNVIQEAARKT---------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 451 ~~~~~l~~la~~t---------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
++++.+..++..+ .| .++.+..++..+...+...+...++.+++..++....
T Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 215 YSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 7889999999998 45 4556666665444444445567899999998887653
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.7e-18 Score=172.30 Aligned_cols=217 Identities=12% Similarity=0.168 Sum_probs=141.1
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCcccc-----------------hhhHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVAPL-----------------GAQAVTKIHE 324 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~~~~-----------------~~~~~~~l~~ 324 (523)
+.++.+++|+||||||||+++++++..+ +..++.++|..+... .+.....+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3456789999999999999999999998 345788898765321 1122344566
Q ss_pred HHHHH-HhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCC----CcHHHhcccc-
Q 009856 325 IFDWA-KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD----LDSAITDRID- 398 (523)
Q Consensus 325 ~f~~a-~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~----l~~al~~Rf~- 398 (523)
.|... .....++||||||+|.|. .+.+|..++........+++||+++|..+. +++++.+||.
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~-----------~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~ 190 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL-----------SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHF 190 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC-----------CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTE
T ss_pred HHHHhhhccCCceEEEEecHHHhh-----------cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCc
Confidence 66653 223457899999999985 245677777655455668999999998764 3455678986
Q ss_pred ceEeecCCCHHHHHHHHHHHHHhhccC----CCCCCCchhhhhhhhhhhh----hh--hhccCCHHHHHHHHHH---CCC
Q 009856 399 EVIEFPLPREEERFKLLKLYLKKYLCS----DEGDSSSLKWGHLFKKQQQ----KI--TIKDLSDNVIQEAARK---TEG 465 (523)
Q Consensus 399 ~~i~~~~p~~~er~~il~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~l~~la~~---t~G 465 (523)
.+|.|++|+.++...|++..+...... .....+..-+..+...... ++ ....+++++++.+|.+ ..|
T Consensus 191 ~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G 270 (318)
T 3te6_A 191 TEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG 270 (318)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC
Confidence 689999999999999999999875320 0000000000000000000 00 0013789999999884 456
Q ss_pred CCHHHHHHHHHHHHHHHHcC------------CCCccCHHHHHHHHHHHH
Q 009856 466 FSGREIAKLMASVQAAVYAR------------PDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 466 ~sgrdI~~L~~~~~~a~~~~------------~~~~it~e~~~~~l~~~~ 503 (523)
|++..++.+..|+... +..+||.+++.+++..++
T Consensus 271 ----D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 271 ----STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHh
Confidence 9999998888777532 113566666666666543
No 66
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.75 E-value=8.8e-19 Score=181.90 Aligned_cols=309 Identities=17% Similarity=0.199 Sum_probs=195.0
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhhhccccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCC
Q 009856 122 LTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQ 201 (523)
Q Consensus 122 ~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~ 201 (523)
...|+.+-++.++. .++...+..++.. .+...++++++.......+.+.+.|+. +|+.||+..
T Consensus 43 ~~~DlvllD~~mp~-~dG~ell~~lr~~-------------~~~~pvIvlT~~~~~~~~~~a~~~Ga~---dyl~KP~~~ 105 (387)
T 1ny5_A 43 KHFNVVLLDLLLPD-VNGLEILKWIKER-------------SPETEVIVITGHGTIKTAVEAMKMGAY---DFLTKPCML 105 (387)
T ss_dssp SCCSEEEEESBCSS-SBHHHHHHHHHHH-------------CTTSEEEEEEETTCHHHHHHHHTTTCC---EEEEESCCH
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhh-------------CCCCcEEEEeCCCCHHHHHHHHhcCce---EEecCCCCH
Confidence 34566666655543 2454555555443 455556666777777777777777764 777777654
Q ss_pred CCcccccCCCCCCCchhhHHHHHHHHhhcCCCCCCCcccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEE
Q 009856 202 PSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFY 281 (523)
Q Consensus 202 ~~l~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~ 281 (523)
..+.. .+.+.+............. ......+..++|.+.....+...+..+..... ++||+
T Consensus 106 ~~L~~-----------~i~~~l~~~~l~~~~~~l~--~~~~~~~~~~ig~s~~m~~l~~~i~~~a~~~~------~vli~ 166 (387)
T 1ny5_A 106 EEIEL-----------TINKAIEHRKLRKENELLR--REKDLKEEEYVFESPKMKEILEKIKKISCAEC------PVLIT 166 (387)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHH--HHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCS------CEEEE
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHhh--hhhhhcchhhhhccHHhhHHHHHHHHhcCCCC------CeEEe
Confidence 44332 2222221110000000000 00011256789988888887777776554332 39999
Q ss_pred cCCCCchHHHHHHHHHHhC---CCeeEEecCCccc--chhhHHHHHHHHHHHHH-------hcCCceEEEEccchhhhhh
Q 009856 282 GPPGTGKTMVAREIARKSG---LDYAMMTGGDVAP--LGAQAVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCE 349 (523)
Q Consensus 282 GppGtGKT~lA~ala~~l~---~~~~~v~~~~~~~--~~~~~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~ 349 (523)
|++|||||++|++++..++ .||+.++|+.+.. +..+.+++..+.|+.+. ....+++|||||++.+
T Consensus 167 Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l--- 243 (387)
T 1ny5_A 167 GESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL--- 243 (387)
T ss_dssp CSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC---
T ss_pred cCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC---
Confidence 9999999999999998874 6899999998654 22222222222222111 1123679999999987
Q ss_pred cccccCcHHHHHHHHHHHHHh-----CCC---CCCEEEEEeeCCC-------CCCcHHHhccccceEeecCCCH----HH
Q 009856 350 RNSIHMSEAQRSALNALLFRT-----GDQ---SRDIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPRE----EE 410 (523)
Q Consensus 350 ~~~~~~~~~~~~~l~~ll~~~-----~~~---~~~v~iI~ttn~~-------~~l~~al~~Rf~~~i~~~~p~~----~e 410 (523)
+...+..|..+++.- +.. ..++.||+|||.. ..+.+.|..|+ .++.+..|+. ++
T Consensus 244 ------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~D 316 (387)
T 1ny5_A 244 ------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKED 316 (387)
T ss_dssp ------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHH
T ss_pred ------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhcccc
Confidence 667788888888752 221 2378899999963 46778888887 4555666665 45
Q ss_pred HHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCcc
Q 009856 411 RFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVL 490 (523)
Q Consensus 411 r~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~i 490 (523)
...++.+|+..+.. ..+.....++++.+..+..+. |+| +++.|.+.++.++..+.+..|
T Consensus 317 i~~l~~~~l~~~~~------------------~~~~~~~~~~~~a~~~l~~~~--wpG-NvreL~~~i~~~~~~~~~~~i 375 (387)
T 1ny5_A 317 IIPLANHFLKKFSR------------------KYAKEVEGFTKSAQELLLSYP--WYG-NVRELKNVIERAVLFSEGKFI 375 (387)
T ss_dssp HHHHHHHHHHHHHH------------------HTTCCCCEECHHHHHHHHHSC--CTT-HHHHHHHHHHHHHHHCCSSEE
T ss_pred HHHHHHHHHHHHHH------------------HcCCCCCCCCHHHHHHHHhCC--CCc-HHHHHHHHHHHHHHhCCCCcC
Confidence 55578888876543 112222358999999998764 555 999999999999988888899
Q ss_pred CHHHHHH
Q 009856 491 DSQLFRE 497 (523)
Q Consensus 491 t~e~~~~ 497 (523)
+.+++..
T Consensus 376 ~~~~l~~ 382 (387)
T 1ny5_A 376 DRGELSC 382 (387)
T ss_dssp CHHHHHH
T ss_pred cHHHCcH
Confidence 9988754
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=8.5e-17 Score=165.57 Aligned_cols=230 Identities=19% Similarity=0.197 Sum_probs=156.4
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh------CCCeeEEecCCccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAP 313 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l------~~~~~~v~~~~~~~ 313 (523)
.+...+++++|.+...+.+...+..... ..++.+++|+||||||||+++++++..+ +.+++.++|.....
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYR----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGG----TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 3445568899999888887765443211 2344579999999999999999999988 88888888653221
Q ss_pred ------------------chhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCC-CC
Q 009856 314 ------------------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-QS 374 (523)
Q Consensus 314 ------------------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-~~ 374 (523)
.+.........++........+.||||||++.+....+ ...+..++..+.. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEVNK 161 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhcCC
Confidence 00011222334444444444478999999999864321 1234444444322 34
Q ss_pred CCEEEEEeeCCC---CCCcHHHhccccc-eEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 375 RDIVLVLATNRP---GDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 375 ~~v~iI~ttn~~---~~l~~al~~Rf~~-~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
.++.+|++||.+ ..+++.+.+||.. .+.|++|+.++...++..++..... ...
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-----------------------~~~ 218 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-----------------------PGV 218 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-----------------------SSC
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-----------------------CCC
Confidence 578899999876 4678899999864 8999999999999999998764321 013
Q ss_pred CCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 451 LSDNVIQEAARKTE---GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 451 ~~~~~l~~la~~t~---G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
++++.+..++..+. | +++.+..++..+...+...+...||.+++..++......
T Consensus 219 ~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 219 LPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp SCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 67888888888876 6 555666666654444444455789999999998876543
No 68
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=9.1e-17 Score=167.72 Aligned_cols=240 Identities=18% Similarity=0.306 Sum_probs=151.2
Q ss_pred CCcccCHHHHHHHHHHHHHH-hcch-----hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCccc---chh
Q 009856 246 GDIILHPSLQRRIQHLAKAT-ANTK-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 316 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~-~~~~-----~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~---~~~ 316 (523)
+.|+|++.+++.+...+... .... ....+++++||+||||||||++|+++|..++.+|+.++++.+.. .+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 57999999999997766432 1111 11135678999999999999999999999999999999866543 221
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 009856 317 QAVTKIHEIFDWA------------------------------------------------------------------- 329 (523)
Q Consensus 317 ~~~~~l~~~f~~a------------------------------------------------------------------- 329 (523)
+....+..+|..+
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 2222333222221
Q ss_pred ----------------------------------------------------------------------H-hcCCceEE
Q 009856 330 ----------------------------------------------------------------------K-KSKKGLLL 338 (523)
Q Consensus 330 ----------------------------------------------------------------------~-~~~~~~vL 338 (523)
. ...+.++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0 00124589
Q ss_pred EEccchhhhhhcccccCcHHHHHHHHHHHHHhCC----------CCCCEEEEEee----CCCCCCcHHHhccccceEeec
Q 009856 339 FIDEADAFLCERNSIHMSEAQRSALNALLFRTGD----------QSRDIVLVLAT----NRPGDLDSAITDRIDEVIEFP 404 (523)
Q Consensus 339 ~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~v~iI~tt----n~~~~l~~al~~Rf~~~i~~~ 404 (523)
|+||+|++....++.........+...||..++. +..+++||+|+ +.+.++.|+|++||+.+|.|+
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 9999999986543222122222233444444432 35678899987 244557799999999999999
Q ss_pred CCCHHHHHHHHH----HHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHH-------HCCCCCHHHHHH
Q 009856 405 LPREEERFKLLK----LYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR-------KTEGFSGREIAK 473 (523)
Q Consensus 405 ~p~~~er~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~-------~t~G~sgrdI~~ 473 (523)
.++.++...|+. ..+.++.. ++.. .+.. -.++++.+..|+. +|....+|.|+.
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~-------------~~~~--~~~~-l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~ 398 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKA-------------LMAT--EGVN-IAFTTDAVKKIAEAAFRVNEKTENIGARRLHT 398 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHH-------------HHHT--TTCE-EEECHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHH-------------Hhcc--cCce-EEECHHHHHHHHHHHHHhccCCccCCchHHHH
Confidence 999999999983 12222211 0000 0001 1478999998886 356667788888
Q ss_pred HHHHHHHH-HHc---C--CCCccCHHHHHHHHHH
Q 009856 474 LMASVQAA-VYA---R--PDCVLDSQLFREVVEY 501 (523)
Q Consensus 474 L~~~~~~a-~~~---~--~~~~it~e~~~~~l~~ 501 (523)
++..+... ++. . ....||.+.+...+..
T Consensus 399 ~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 399 VMERLMDKISFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp HHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCc
Confidence 88544433 332 1 1236888888776543
No 69
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=4.7e-18 Score=156.93 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=113.9
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCC
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGD 310 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~ 310 (523)
....|++++|.+.....+...+.. ..+.+++|+||||||||++|++++..+ +.+++.+++..
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hhccccccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 355789999998877776654321 234579999999999999999999987 67788887765
Q ss_pred cc---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 311 VA---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 311 ~~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+. ...+.....+..++..+.....++||||||+|.+.+...... .......+..++. ..++.+|++||.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~l~~~~~-----~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPALA-----RGELHCVGATTLDE 162 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHHH-----TTSCCEEEEECHHH
T ss_pred HhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHHHHHHHHHhhc-----cCCeEEEEeCCHHH
Confidence 43 234445556677777665556678999999999875432211 1122344444442 34678899988765
Q ss_pred -----CCcHHHhccccceEeecCCCHHHHHHHH
Q 009856 388 -----DLDSAITDRIDEVIEFPLPREEERFKLL 415 (523)
Q Consensus 388 -----~l~~al~~Rf~~~i~~~~p~~~er~~il 415 (523)
.+++++.+||. .+.|++|+.+++..|+
T Consensus 163 ~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 78999999996 7999999999998775
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=2e-16 Score=161.18 Aligned_cols=206 Identities=18% Similarity=0.223 Sum_probs=145.1
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCC-----CeeEEecCCcccc
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPL 314 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~-----~~~~v~~~~~~~~ 314 (523)
..+..|++++|++.+...+...+.. +. ..+++|+||||||||++|+++|..+.. .+..+++++...
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-------g~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~- 89 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-------GK-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG- 89 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-------TC-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS-
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-------CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc-
Confidence 3456789999999988887765542 22 225999999999999999999998743 255566554321
Q ss_pred hhhHHHHHHHHHHHHHh-----cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCC
Q 009856 315 GAQAVTKIHEIFDWAKK-----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 389 (523)
Q Consensus 315 ~~~~~~~l~~~f~~a~~-----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l 389 (523)
.+ .+...+..... ...+.|++|||+|.+. ...+..|..++ ...+.++.+|++||.+..+
T Consensus 90 -~~---~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~~~~L~~~l---e~~~~~~~~il~~n~~~~i 153 (340)
T 1sxj_C 90 -ID---VVRNQIKDFASTRQIFSKGFKLIILDEADAMT---------NAAQNALRRVI---ERYTKNTRFCVLANYAHKL 153 (340)
T ss_dssp -HH---HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------HHHHHHHHHHH---HHTTTTEEEEEEESCGGGS
T ss_pred -HH---HHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------HHHHHHHHHHH---hcCCCCeEEEEEecCcccc
Confidence 11 22222222111 1236899999999873 23344444444 4456678899999999999
Q ss_pred cHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHH
Q 009856 390 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 469 (523)
Q Consensus 390 ~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 469 (523)
.+++.+|| ..+.|++++.++...++...+..... .++++.+..++..+.|
T Consensus 154 ~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~-------------------------~i~~~~~~~i~~~s~G---- 203 (340)
T 1sxj_C 154 TPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKL-------------------------KLSPNAEKALIELSNG---- 203 (340)
T ss_dssp CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTC-------------------------CBCHHHHHHHHHHHTT----
T ss_pred chhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----
Confidence 99999999 58999999999999999888864332 4688899999999888
Q ss_pred HHHHHHHHHHHHHHcCCC---CccCHHHHHHHHH
Q 009856 470 EIAKLMASVQAAVYARPD---CVLDSQLFREVVE 500 (523)
Q Consensus 470 dI~~L~~~~~~a~~~~~~---~~it~e~~~~~l~ 500 (523)
+++.+++.++.++..... ..+|.+++..++.
T Consensus 204 ~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 204 DMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 777777776665543321 2688888876654
No 71
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.8e-16 Score=160.67 Aligned_cols=194 Identities=16% Similarity=0.247 Sum_probs=132.0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCC-----------------
Q 009856 240 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 302 (523)
Q Consensus 240 ~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~----------------- 302 (523)
..+.+|++++|++.+.+.+...+. ..+..+ +++|+||||||||+++++++..+..+
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~------~~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD------QPRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT------CTTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh------hCCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 356678999999998887765431 112222 49999999999999999999965211
Q ss_pred ------------eeEEecCCcccchhhHHHHHHHHHHHHHh-------------cCCceEEEEccchhhhhhcccccCcH
Q 009856 303 ------------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK-------------SKKGLLLFIDEADAFLCERNSIHMSE 357 (523)
Q Consensus 303 ------------~~~v~~~~~~~~~~~~~~~l~~~f~~a~~-------------~~~~~vL~iDEid~l~~~~~~~~~~~ 357 (523)
++.+++++... .....+...+..+.. ..++.||||||++.+ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------~~ 148 (354)
T 1sxj_E 81 RKLELNVVSSPYHLEITPSDMGN---NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------TK 148 (354)
T ss_dssp -----CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---------CH
T ss_pred ccceeeeecccceEEecHhhcCC---cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---------CH
Confidence 22222221110 000012333332211 224679999999985 33
Q ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhh
Q 009856 358 AQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 437 (523)
Q Consensus 358 ~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~ 437 (523)
..+..+..++.. ...++.||++||.+..+.+.+.+|| ..+.|++|+.+++..++...+.....
T Consensus 149 ~~~~~L~~~le~---~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~------------- 211 (354)
T 1sxj_E 149 DAQAALRRTMEK---YSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI------------- 211 (354)
T ss_dssp HHHHHHHHHHHH---STTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHh---hcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC-------------
Confidence 444455555544 3457889999999999999999999 89999999999999999998876543
Q ss_pred hhhhhhhhhhhccCC-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcC
Q 009856 438 LFKKQQQKITIKDLS-DNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 485 (523)
Q Consensus 438 ~~~~~~~~~~~~~~~-~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~ 485 (523)
.++ ++.+..|+..+.| +++.+++.++.++...
T Consensus 212 ------------~~~~~~~l~~i~~~~~G----~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 212 ------------QLETKDILKRIAQASNG----NLRVSLLMLESMALNN 244 (354)
T ss_dssp ------------EECCSHHHHHHHHHHTT----CHHHHHHHHTHHHHTT
T ss_pred ------------CCCcHHHHHHHHHHcCC----CHHHHHHHHHHHHHhC
Confidence 356 7889999999988 6777776666666543
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=1.1e-16 Score=180.38 Aligned_cols=226 Identities=15% Similarity=0.160 Sum_probs=156.9
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...|+.+||.+.....+..++. .....++||+||||||||++|+++|..+ +.+++.++++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~--------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l 253 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC--------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--
T ss_pred cCCCCCccCCHHHHHHHHHHHh--------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH
Confidence 4578999999988887766543 2244579999999999999999999987 455666665544
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. ...+.....+..+|..+... .++||||||++.+.+........ ....+.+...+ ...++.+|++||.++
T Consensus 254 ~~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~---~~~~~~L~~~l--~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 LAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQ---VDAANLIKPLL--SSGKIRVIGSTTYQEF 327 (758)
T ss_dssp -CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCH---HHHHHHHSSCS--SSCCCEEEEEECHHHH
T ss_pred hccccccchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcch---HHHHHHHHHHH--hCCCeEEEEEeCchHH
Confidence 3 23445666778888777544 46899999999997765432212 22223232222 245678888888643
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
.++++|.+||. .+.|+.|+.+++..|+..++..+.. .. ...++++.+..++..+
T Consensus 328 ~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~------------------~~---~v~~~~~al~~~~~~s 385 (758)
T 1r6b_X 328 SNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA------------------HH---DVRYTAKAVRAAVELA 385 (758)
T ss_dssp HCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHH------------------HH---TCCCCHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHH------------------hc---CCCCCHHHHHHHHHHh
Confidence 57899999995 7999999999999999988776432 01 1146788888877665
Q ss_pred CC-----CCHHHHHHHHHHHHHHHHc----CCCCccCHHHHHHHHHHHH
Q 009856 464 EG-----FSGREIAKLMASVQAAVYA----RPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 464 ~G-----~sgrdI~~L~~~~~~a~~~----~~~~~it~e~~~~~l~~~~ 503 (523)
.| +.+..+..+++.+...+.. .....++.++|..++....
T Consensus 386 ~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 386 VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 44 4566777888655554443 2346799999999988753
No 73
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.71 E-value=2e-18 Score=177.88 Aligned_cols=295 Identities=19% Similarity=0.276 Sum_probs=185.4
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhhhccccchhHHHHHhhhHHhhhhhcCCcchhhhHHHHHHhCC
Q 009856 122 LTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQ 201 (523)
Q Consensus 122 ~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~l~~ 201 (523)
...|+.+.++.++.. ++...+..++.. .|+..++++++.......+.+.+.|+. +|+.||+..
T Consensus 43 ~~~DlvllDi~mP~~-dG~ell~~lr~~-------------~~~~pvI~lT~~~~~~~~~~a~~~Ga~---~yl~KP~~~ 105 (368)
T 3dzd_A 43 LFFPVIVLDVWMPDG-DGVNFIDFIKEN-------------SPDSVVIVITGHGSVDTAVKAIKKGAY---EFLEKPFSV 105 (368)
T ss_dssp BCCSEEEEESEETTE-ETTTHHHHHHHH-------------CTTCEEEEEECSSCCHHHHHHHHHTCC---EEEESSCCH
T ss_pred CCCCEEEEeCCCCCC-CHHHHHHHHHhh-------------CCCCeEEEEeCCCCHHHHHHHHhcCcc---eEEeCCCCH
Confidence 345666666655542 454555555543 345555556666555555555555653 667666644
Q ss_pred CCcccccCCCCCCCchhhHHHHHHHHhhcCCCCCCCcccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEE
Q 009856 202 PSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFY 281 (523)
Q Consensus 202 ~~l~~e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~ 281 (523)
..+.. .+.+.+... ...... ..-..++|.+.....+...+..+..... .+||+
T Consensus 106 ~~L~~-----------~i~~~l~~~----~~~~~~------~~~~~~ig~s~~~~~~~~~~~~~a~~~~------~vli~ 158 (368)
T 3dzd_A 106 ERFLL-----------TIKHAFEEY----SKKAPP------QEEIEFVGEHPKILEIKRLIPKIAKSKA------PVLIT 158 (368)
T ss_dssp HHHHH-----------HHHHHHHHH----SCCCCC------CCCCCCCCCSHHHHHHHHHHHHHHTSCS------CEEEE
T ss_pred HHHHH-----------HHHHHHHHh----hhhhcc------cccccccccchHHHHHHhhhhhhhccch------hheEE
Confidence 33332 222222222 100000 0125689998888888877776654433 39999
Q ss_pred cCCCCchHHHHHHHHHHhCCC--eeEEecCCcccc--hhhHHHHHHHHHHHHH-------hcCCceEEEEccchhhhhhc
Q 009856 282 GPPGTGKTMVAREIARKSGLD--YAMMTGGDVAPL--GAQAVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 282 GppGtGKT~lA~ala~~l~~~--~~~v~~~~~~~~--~~~~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~~ 350 (523)
|++||||+++|++++..++.. |+.++|+.+... ..+.+++..+.|+.+. ....++.||||||+.|
T Consensus 159 GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l---- 234 (368)
T 3dzd_A 159 GESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL---- 234 (368)
T ss_dssp CCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS----
T ss_pred eCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhC----
Confidence 999999999999999988644 999999987642 2222222111121110 1123578999999987
Q ss_pred ccccCcHHHHHHHHHHHHHh-----CCC---CCCEEEEEeeCCC-------CCCcHHHhccccceEe--ecCCCH--HHH
Q 009856 351 NSIHMSEAQRSALNALLFRT-----GDQ---SRDIVLVLATNRP-------GDLDSAITDRIDEVIE--FPLPRE--EER 411 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~-----~~~---~~~v~iI~ttn~~-------~~l~~al~~Rf~~~i~--~~~p~~--~er 411 (523)
+...+..|..+++.- +.. ..++.||++||.. ..+.+.|..|+ .++. +|+... ++.
T Consensus 235 -----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di 308 (368)
T 3dzd_A 235 -----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDV 308 (368)
T ss_dssp -----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHH
T ss_pred -----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhH
Confidence 667788888888652 211 2367899999863 46777888888 4444 444444 456
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccC
Q 009856 412 FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLD 491 (523)
Q Consensus 412 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it 491 (523)
..++.+|+.++.. ..+.....++++.+..|..+. |+| |++.|.+.++.++..+.+..|+
T Consensus 309 ~~l~~~~l~~~~~------------------~~~~~~~~~~~~a~~~L~~~~--wpG-NvreL~n~i~~~~~~~~~~~i~ 367 (368)
T 3dzd_A 309 ILLAEYFLKKFAK------------------EYKKNCFELSEETKEYLMKQE--WKG-NVRELKNLIERAVILCEGEVIK 367 (368)
T ss_dssp HHHHHHHHHHHHH------------------HTTCCCCCBCHHHHHHHHTCC--CTT-HHHHHHHHHHHHHHTCCSSBCC
T ss_pred HHHHHHHHHHHHH------------------HcCCCCCCcCHHHHHHHHhCC--CCc-HHHHHHHHHHHHHHhCCCCccC
Confidence 6788888877643 112222358999999998775 444 9999999999999888777665
No 74
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=1.1e-16 Score=170.04 Aligned_cols=188 Identities=18% Similarity=0.293 Sum_probs=126.4
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...|+.+||.+.....+..++.. ....++||+||||||||++|+++|..+ +.+++.++++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--
Confidence 45789999999988887766542 233579999999999999999999997 6778888776
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC----
Q 009856 312 APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 387 (523)
Q Consensus 312 ~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---- 387 (523)
..+.+.....+..+|..+... .++||||| . +.. ..+.++..+ ..+.+.+|++||.+.
T Consensus 246 ~~~~g~~e~~~~~~~~~~~~~-~~~iLfiD--~-----------~~~---a~~~L~~~L--~~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 TKYRGEFEDRLKKVMDEIRQA-GNIILFID--A-----------AID---ASNILKPSL--ARGELQCIGATTLDEYRKY 306 (468)
T ss_dssp -------CTTHHHHHHHHHTC-CCCEEEEC--C----------------------CCCT--TSSSCEEEEECCTTTTHHH
T ss_pred ccccchHHHHHHHHHHHHHhc-CCeEEEEe--C-----------chh---HHHHHHHhh--cCCCEEEEecCCHHHHHHH
Confidence 333334445667788877654 46899999 1 111 222333222 245789999999887
Q ss_pred -CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCC
Q 009856 388 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 466 (523)
Q Consensus 388 -~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 466 (523)
.+++++.+||. +|.|+.|+.+++..|++.++..+.. ..+ ..++++.+..++..+.+|
T Consensus 307 ~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~------------------~~~---~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 307 IEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA------------------HHR---VSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp HTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG------------------GSS---CSCCHHHHHHHHHHHHHS
T ss_pred hhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH------------------hcC---CCCCHHHHHHHHHHHHHH
Confidence 68999999995 7999999999999999988766432 011 146777888777664433
Q ss_pred -----CHHHHHHHHHHHHH
Q 009856 467 -----SGREIAKLMASVQA 480 (523)
Q Consensus 467 -----sgrdI~~L~~~~~~ 480 (523)
.+.....++..+.+
T Consensus 365 ~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHH
T ss_pred hccCcCCcHHHHHHHHHHH
Confidence 34456666654333
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=1.3e-16 Score=146.84 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=105.6
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCCc
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 311 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~~ 311 (523)
...|++++|.+.....+...+.. ....++||+||||||||++|++++..+ +.+++.+++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL 89 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh
Confidence 45789999999877766554421 234579999999999999999999987 667777766543
Q ss_pred c---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC-
Q 009856 312 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 387 (523)
Q Consensus 312 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~- 387 (523)
. ...+.....+..++..+.....+.+|||||+|.+.+.+............+..++. ..+++||+++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~-----~~~~~ii~~~~~~~~ 164 (187)
T 2p65_A 90 IAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-----RGELRCIGATTVSEY 164 (187)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH-----TTCSCEEEEECHHHH
T ss_pred hcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh-----cCCeeEEEecCHHHH
Confidence 2 13334445566677666665567899999999997543311111122334444442 35678999998764
Q ss_pred ----CCcHHHhccccceEeecCCC
Q 009856 388 ----DLDSAITDRIDEVIEFPLPR 407 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~ 407 (523)
.+++++.+||. .+.+++|+
T Consensus 165 ~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 165 RQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHhccHHHHHhcC-cccCCCCC
Confidence 68999999996 69999886
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.68 E-value=3.5e-16 Score=178.17 Aligned_cols=207 Identities=20% Similarity=0.254 Sum_probs=134.3
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCC
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGD 310 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~ 310 (523)
....|+.+||.+.....+..++. ....++++|+||||||||++|+++|..+ +.+++.++++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~--------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL--------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH--------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred hcCCCcccCCcHHHHHHHHHHHh--------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 35678999999987777766543 1233569999999999999999999987 78889998877
Q ss_pred cc---cchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 311 VA---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 311 ~~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+. ...++....+..+|..+.....++||||||++.+.+.....+ .......+..++. ..++.+|++||.++
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~~~~~~~L~~~l~-----~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVDAGNMLKPALA-----RGELRLIGATTLDE 310 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHH-----TTCCCEEEEECHHH
T ss_pred hhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-hHHHHHHHHHHHh-----CCCeEEEEecCchH
Confidence 64 244456667888888887665678999999999976543321 1122334444442 35677899888764
Q ss_pred ----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC
Q 009856 388 ----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 463 (523)
Q Consensus 388 ----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 463 (523)
.++++|.+||+ .|.|++|+.+++..|++.++..+.. ..+ ..++++.+..++..+
T Consensus 311 ~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~------------------~~~---~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 311 YREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV------------------HHG---VRISDSAIIAAATLS 368 (854)
T ss_dssp HHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH------------------HTT---CEECHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh------------------hcC---CCCCHHHHHHHHHHH
Confidence 47899999996 5999999999999999988876532 001 135777777776654
Q ss_pred -----CCCCHHHHHHHHHHHHHHHH
Q 009856 464 -----EGFSGREIAKLMASVQAAVY 483 (523)
Q Consensus 464 -----~G~sgrdI~~L~~~~~~a~~ 483 (523)
.+|.+.....++..+.+.+.
T Consensus 369 ~r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 369 HRYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred hhhcccccChHHHHHHHHHHHHHHH
Confidence 34556666666654444443
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.66 E-value=3.2e-16 Score=166.85 Aligned_cols=232 Identities=15% Similarity=0.107 Sum_probs=140.5
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC--CCeeEEecCCccc--chh-hHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAP--LGA-QAVT 320 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~--~~~~~v~~~~~~~--~~~-~~~~ 320 (523)
..++|++.+...+...+.. + .++||+||||||||++|+++|..++ .+|..+++....+ +.+ ....
T Consensus 22 ~~ivGq~~~i~~l~~al~~-------~---~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS-------G---ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH-------T---CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhc-------C---CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHH
Confidence 6799999998877654432 1 3599999999999999999999884 3555555542111 000 0000
Q ss_pred H--HHHHHHHHHhc--CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHh-----C---CCCCCEEEEEeeCCCC-
Q 009856 321 K--IHEIFDWAKKS--KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----G---DQSRDIVLVLATNRPG- 387 (523)
Q Consensus 321 ~--l~~~f~~a~~~--~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~---~~~~~v~iI~ttn~~~- 387 (523)
. -.+.|..+... ..++|||||||+.+ +...+..|..++..- + ..+.. ++|+|||.+.
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~---------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN~lpe 161 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASNELPE 161 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGC---------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEESSCCC
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhh---------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccccCCC
Confidence 0 01112111110 02468999999875 445566666665421 0 11223 4677888633
Q ss_pred --CCcHHHhccccceEeecCCCH-HHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC-
Q 009856 388 --DLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT- 463 (523)
Q Consensus 388 --~l~~al~~Rf~~~i~~~~p~~-~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t- 463 (523)
.+.+++++||...+.+++|+. +++..|+......... ............+.. ....+.-..++++.++.++...
T Consensus 162 ~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~-~~~~~~~~~~e~l~~-~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 162 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN-PVPDALQVTDEEYER-WQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSC-CSCTTTSBCHHHHHH-HHHHHTTCBCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCC-CCCccceecHHHHHH-HHhcCCcccCchHHHHHHHHHHH
Confidence 355799999988899999997 6788888765432211 000000000001111 1112222357888888876654
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 009856 464 --------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 500 (523)
Q Consensus 464 --------~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~ 500 (523)
.|.|+|.+..++..+.+.+...+...++++|+. ++.
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 588999999999999999998888888988887 443
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=9.4e-17 Score=175.17 Aligned_cols=242 Identities=14% Similarity=0.087 Sum_probs=148.6
Q ss_pred CCcccCHHHHHHHHHHHHHHhcch------hcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE----ecCCccc-c
Q 009856 246 GDIILHPSLQRRIQHLAKATANTK------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM----TGGDVAP-L 314 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~------~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v----~~~~~~~-~ 314 (523)
..++|++.++..+...+. ... .......++||+||||||||++|+++|..++.+++.. +++.+.. .
T Consensus 295 ~~I~G~e~vk~al~~~l~---~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF---GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTTT---CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHHh---CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 568888888776632211 110 0011223799999999999999999999987665442 1222211 1
Q ss_pred hhhH-HHH---HHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEE
Q 009856 315 GAQA-VTK---IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLV 380 (523)
Q Consensus 315 ~~~~-~~~---l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----------~~~~~v~iI 380 (523)
.... .+. ..+.+..+ .++||||||+|.+ +...+..|..++..-. ..+.++.||
T Consensus 372 ~~~~~~g~~~~~~G~l~~A----~~gil~IDEid~l---------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA----DGGIAVIDEIDKM---------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH----SSSEECCTTTTCC---------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eeccccccccccCCeeEec----CCCcEEeehhhhC---------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 0000 000 01112222 3579999999987 3355666666664311 123467899
Q ss_pred EeeCCCC-------------CCcHHHhccccceEe-ecCCCHHHHHHHHHHHHHhhccCCCCC-CCchhhhhhhhhhhhh
Q 009856 381 LATNRPG-------------DLDSAITDRIDEVIE-FPLPREEERFKLLKLYLKKYLCSDEGD-SSSLKWGHLFKKQQQK 445 (523)
Q Consensus 381 ~ttn~~~-------------~l~~al~~Rf~~~i~-~~~p~~~er~~il~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 445 (523)
+|||.+. .+++++++|||..+. .+.|+.+ ...|+.+.+..+....... .....+..+.......
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~ 517 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKY 517 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHh
Confidence 9999876 899999999986554 4556666 7788888877543210000 0000111111111111
Q ss_pred hhhccCCHHHHHHHHHH--------------CCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 446 ITIKDLSDNVIQEAARK--------------TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 446 ~~~~~~~~~~l~~la~~--------------t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
+ ...++++..+.|... ..+.|+|.+..++..+++.|.......++.+|+..|+.-....
T Consensus 518 ~-~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 518 V-TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp H-CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 1 124666667777665 3478999999999999999998888999999999999876543
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=4.5e-15 Score=167.08 Aligned_cols=192 Identities=18% Similarity=0.277 Sum_probs=131.3
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----------CCCeeEEecCC
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGD 310 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----------~~~~~~v~~~~ 310 (523)
....|+.+||.+.....+..++. .....++||+||||||||++|+++|..+ +.+++.+++
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~--------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-- 244 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLS--------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-- 244 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHH--------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred hhCCCCCccCchHHHHHHHHHHh--------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--
Confidence 34578999999999988877654 2334579999999999999999999997 677777766
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC---
Q 009856 311 VAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 387 (523)
Q Consensus 311 ~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~--- 387 (523)
...+.++....+..+|..+.. ..++||||| . +.. ..+.++..+ ..+.+.+|++||...
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD--~-----------~~~---~~~~L~~~l--~~~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQ-AGNIILFID--A-----------AID---ASNILKPSL--ARGELQCIGATTLDEYRK 305 (758)
T ss_dssp --------CTTHHHHHHHHHT-CCCCEEEEC--C----------------------CCCT--TSSSCEEEEECCTTTTHH
T ss_pred cccccchHHHHHHHHHHHHHh-cCCEEEEEc--C-----------chh---HHHHHHHHH--hcCCEEEEeCCChHHHHH
Confidence 122334445567888888766 447899999 1 111 222333222 255789999999888
Q ss_pred --CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHC--
Q 009856 388 --DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-- 463 (523)
Q Consensus 388 --~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-- 463 (523)
.+++++.+|| ..|.|+.|+.+++..|++.++..+.. ..+ ..++++.+..++..+
T Consensus 306 ~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~------------------~~~---~~i~~~al~~~~~~s~~ 363 (758)
T 3pxi_A 306 YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA------------------HHR---VSITDDAIEAAVKLSDR 363 (758)
T ss_dssp HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG------------------GSS---CSCCHHHHHHHHHHHHH
T ss_pred HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH------------------hcC---CCCCHHHHHHHHHHhhc
Confidence 7999999999 67999999999999999987765432 011 147788888777653
Q ss_pred ---CCCCHHHHHHHHHHHHHHHH
Q 009856 464 ---EGFSGREIAKLMASVQAAVY 483 (523)
Q Consensus 464 ---~G~sgrdI~~L~~~~~~a~~ 483 (523)
.++.+.....++..+.+.+.
T Consensus 364 ~i~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 364 YISDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp SSCCSCTTHHHHHHHHHHHHHHH
T ss_pred ccccCcCCcHHHHHHHHHHHHHH
Confidence 45666677777765544443
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.62 E-value=7.1e-15 Score=149.49 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=113.5
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCC------------------------eeEEecCCcccchhhHHHHHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------------YAMMTGGDVAPLGAQAVTKIHEIFD 327 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~~f~ 327 (523)
+..++.+||+||||||||++|+++|+.+.++ +..+++.... .......+..++.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK--NTLGVDAVREVTE 98 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC--SSBCHHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC--CCCCHHHHHHHHH
Confidence 3445579999999999999999999988543 2223221100 0112334555555
Q ss_pred HHHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEeec
Q 009856 328 WAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFP 404 (523)
Q Consensus 328 ~a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~ 404 (523)
.+... .++.|+||||+|.+. ....+.++..++.++.+++||++||.++.+.+.++||| ..+.|+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~ 165 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC-RLHYLA 165 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS-EEEECC
T ss_pred HHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc-eeeeCC
Confidence 54332 346899999999973 23456777888888889999999999999999999999 789999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHH
Q 009856 405 LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLM 475 (523)
Q Consensus 405 ~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~ 475 (523)
+|+.++...++...+ .++++.+..++..+.| +++.+..++
T Consensus 166 ~~~~~~~~~~L~~~~------------------------------~~~~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV------------------------------TMSQDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp CCCHHHHHHHHHHHC------------------------------CCCHHHHHHHHHHTTT-CHHHHHHTT
T ss_pred CCCHHHHHHHHHHhc------------------------------CCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 999999988887653 1567788888888877 444444433
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.61 E-value=2.1e-15 Score=134.51 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=91.3
Q ss_pred CcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhHHHHHH
Q 009856 247 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKIH 323 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~~~~l~ 323 (523)
+++|.+.....+...+....... .+|||+||||||||++|++++..+ +.||+ ++|+.+... ....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~------~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETD------IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCC------SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCC------CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhh
Confidence 57898888888877666554322 349999999999999999999987 77999 999876543 2233
Q ss_pred HHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC-------CCCcHHHhcc
Q 009856 324 EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-------GDLDSAITDR 396 (523)
Q Consensus 324 ~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~-------~~l~~al~~R 396 (523)
..|..+ .+++|||||+|.+ +...+..|..++ .....++.||+|||.+ ..+.+.+..|
T Consensus 70 ~~~~~a----~~g~l~ldei~~l---------~~~~q~~Ll~~l---~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 70 DFIALA----QGGTLVLSHPEHL---------TREQQYHLVQLQ---SQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp HHHHHH----TTSCEEEECGGGS---------CHHHHHHHHHHH---HSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred cHHHHc----CCcEEEEcChHHC---------CHHHHHHHHHHH---hhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 445444 2579999999987 334555555555 3334567899999864 3677888888
Q ss_pred cc-ceEeecC
Q 009856 397 ID-EVIEFPL 405 (523)
Q Consensus 397 f~-~~i~~~~ 405 (523)
+. ..|.+|+
T Consensus 134 l~~~~i~lPp 143 (145)
T 3n70_A 134 FAMTQIACLP 143 (145)
T ss_dssp HHHHEEECCC
T ss_pred hcCCEEeCCC
Confidence 74 2355554
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.57 E-value=2.4e-15 Score=133.83 Aligned_cols=131 Identities=12% Similarity=0.210 Sum_probs=89.6
Q ss_pred CcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHH
Q 009856 247 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIF 326 (523)
Q Consensus 247 ~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f 326 (523)
+++|.+.....+...+...... ..+|||+||||||||++|++++..++ +|+.++|+.+... .....|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~------~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID------MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH------CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH------hhhhHH
Confidence 5789988888888877655432 23599999999999999999999888 9999988764321 134445
Q ss_pred HHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC-CC----CcHHHhcccc-ce
Q 009856 327 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-GD----LDSAITDRID-EV 400 (523)
Q Consensus 327 ~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~-~~----l~~al~~Rf~-~~ 400 (523)
..+ .+++|||||+|.+ +...+..+..++.... ..++.+|+|||.+ .. +++.+..|+. ..
T Consensus 72 ~~a----~~~~l~lDei~~l---------~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~ 136 (143)
T 3co5_A 72 QKA----EGGVLYVGDIAQY---------SRNIQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKLAGLFSESV 136 (143)
T ss_dssp HHT----TTSEEEEEECTTC---------CHHHHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEE
T ss_pred HhC----CCCeEEEeChHHC---------CHHHHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcE
Confidence 433 3579999999987 3355566666665432 4567899998754 33 5566777863 34
Q ss_pred EeecC
Q 009856 401 IEFPL 405 (523)
Q Consensus 401 i~~~~ 405 (523)
|.+|+
T Consensus 137 i~lPp 141 (143)
T 3co5_A 137 VRIPP 141 (143)
T ss_dssp EEECC
T ss_pred EeCCC
Confidence 55554
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=3.1e-13 Score=140.50 Aligned_cols=233 Identities=14% Similarity=0.131 Sum_probs=147.4
Q ss_pred cccCCCcccCHHHHHHHHHHH-HHHhcchhcCCCCceEEE--EcCCCCchHHHHHHHHHHh---------CCCeeEEecC
Q 009856 242 IKNNGDIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLF--YGPPGTGKTMVAREIARKS---------GLDYAMMTGG 309 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~-~~~~~~~~~~~p~~~vLL--~GppGtGKT~lA~ala~~l---------~~~~~~v~~~ 309 (523)
....+.++|.+...+.+...+ ....... ...+.+++| +||||||||++++.+++.+ +.+++.++|.
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 344478999988888887766 5433210 023457999 9999999999999999876 4567777764
Q ss_pred Ccccc---h--------------hh-HHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 009856 310 DVAPL---G--------------AQ-AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 371 (523)
Q Consensus 310 ~~~~~---~--------------~~-~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 371 (523)
..... . +. ....+..+.........+.||||||++.+...... +......+..++....
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~---~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI---AAEDLYTLLRVHEEIP 172 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS---CHHHHHHHHTHHHHSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc---chHHHHHHHHHHHhcc
Confidence 32110 0 00 01112222222222345789999999998532100 1122222222333322
Q ss_pred CCC--CCEEEEEeeCCCC---CCc---HHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhh
Q 009856 372 DQS--RDIVLVLATNRPG---DLD---SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 443 (523)
Q Consensus 372 ~~~--~~v~iI~ttn~~~---~l~---~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 443 (523)
... .++.||++||.++ .++ +.+.++|...+.|++++.++...++...+..... .
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~---------------- 234 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--D---------------- 234 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--T----------------
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--C----------------
Confidence 113 6788998887654 344 6677787767999999999999999988764322 0
Q ss_pred hhhhhccCCHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 009856 444 QKITIKDLSDNVIQEAARKTE------GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 503 (523)
Q Consensus 444 ~~~~~~~~~~~~l~~la~~t~------G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~ 503 (523)
..++++.+..++..+. | .++.+..++..+...+.......++.+++..++....
T Consensus 235 -----~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 235 -----TVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp -----TSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred -----CCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1367888999999998 7 6667778876554445555566888888888776543
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=6.8e-14 Score=140.16 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=103.7
Q ss_pred cCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh------CCCeeEEecCCcccchhhHHHHHH
Q 009856 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAPLGAQAVTKIH 323 (523)
Q Consensus 250 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l------~~~~~~v~~~~~~~~~~~~~~~l~ 323 (523)
|++++.+.+...+. . +. .+++|||||||||||++|+++|+.+ ..++..++++.- .. ....++
T Consensus 1 g~~~~~~~L~~~i~---~----~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~---~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIE---K----SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NI---GIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHH---T----CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CB---CHHHHH
T ss_pred ChHHHHHHHHHHHH---C----CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CC---CHHHHH
Confidence 44555555555443 2 22 3479999999999999999999864 345666665421 12 233455
Q ss_pred HHHHHHHhc---CCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccce
Q 009856 324 EIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEV 400 (523)
Q Consensus 324 ~~f~~a~~~---~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~ 400 (523)
.++..+... .+..|+||||+|.|. ....+.|+..++.++.+++||++|+.+..+.|+++|| +
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred HHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---e
Confidence 566555433 235799999999973 2346677777788888999999999999999999999 8
Q ss_pred EeecCCCHHHHHHHHHHHH
Q 009856 401 IEFPLPREEERFKLLKLYL 419 (523)
Q Consensus 401 i~~~~p~~~er~~il~~~l 419 (523)
+.|++|+.++...++...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999988876
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.48 E-value=1.5e-13 Score=150.71 Aligned_cols=224 Identities=19% Similarity=0.208 Sum_probs=141.4
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCe---eEEecCCcccc-
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY---AMMTGGDVAPL- 314 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~---~~v~~~~~~~~- 314 (523)
..+...|++++|++.+.+.+...+.. + .+++|+||||||||++|++||..+.... +.+.+......
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~-------g---~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ-------K---RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT-------T---CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS
T ss_pred cccccccceEECchhhHhhccccccC-------C---CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC
Confidence 34567889999999988777665442 1 3599999999999999999999885332 22222111100
Q ss_pred -------hhhH-------------------------------------------------HHHHHHHHHH----------
Q 009856 315 -------GAQA-------------------------------------------------VTKIHEIFDW---------- 328 (523)
Q Consensus 315 -------~~~~-------------------------------------------------~~~l~~~f~~---------- 328 (523)
.+.. ......+|..
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 0000 0001111110
Q ss_pred ------------HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC------------------CCCCCEE
Q 009856 329 ------------AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------------------DQSRDIV 378 (523)
Q Consensus 329 ------------a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~~~v~ 378 (523)
......+++|||||++.+ +...+..|..++..-. ..+.++.
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l---------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~ 254 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIATL---------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV 254 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGGS---------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCE
T ss_pred ccccccccccCceeeecCCCEEEEechhhC---------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEE
Confidence 001123579999999986 4466667777775321 0123788
Q ss_pred EEEeeCCC--CCCcHHHhcccc---ceEeecCC---CHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhcc
Q 009856 379 LVLATNRP--GDLDSAITDRID---EVIEFPLP---REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 450 (523)
Q Consensus 379 iI~ttn~~--~~l~~al~~Rf~---~~i~~~~p---~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (523)
||+|||.. ..++++|++||+ ..+.|+.. .......++..+...... .-....
T Consensus 255 vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~ 314 (604)
T 3k1j_A 255 LVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR--------------------DGKIPH 314 (604)
T ss_dssp EEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH--------------------HCSSCC
T ss_pred EEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh--------------------ccCccc
Confidence 99999976 679999999996 45555432 234455555444333221 001124
Q ss_pred CCHHHHHHHHHHC---CCC------CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 009856 451 LSDNVIQEAARKT---EGF------SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 501 (523)
Q Consensus 451 ~~~~~l~~la~~t---~G~------sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~ 501 (523)
++++.+..|...+ .|- +.|++..++..+...+.......|+.+|+..++..
T Consensus 315 ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 315 FTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp BBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 7888888887653 553 68999999987777776677789999999999864
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.29 E-value=4.7e-11 Score=147.21 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=108.3
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHH-HHHHhCCCeeEEecCCcccchhhHHHHH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVARE-IARKSGLDYAMMTGGDVAPLGAQAVTKI 322 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~a-la~~l~~~~~~v~~~~~~~~~~~~~~~l 322 (523)
.+.+++.+..--.+...++....... +++||+||||||||++|+. ++...+.+++.++++..... ..+
T Consensus 1242 ~~~~iiVpT~DT~R~~~ll~~~l~~~------~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~-----~~~ 1310 (2695)
T 4akg_A 1242 MRPDIVIPTIDTIKHEKIFYDLLNSK------RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-----EHI 1310 (2695)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHT------CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH-----HHH
T ss_pred CccceeEeccchHHHHHHHHHHHHCC------CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH-----HHH
Confidence 45666666444444444444333222 3599999999999999955 44444677777877654432 223
Q ss_pred HHHHHHHHh--------------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--C-CC------CCEEE
Q 009856 323 HEIFDWAKK--------------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--D-QS------RDIVL 379 (523)
Q Consensus 323 ~~~f~~a~~--------------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~-~~------~~v~i 379 (523)
...+..... ....+||||||++.....+. + +......|..++..-+ . .. .++.+
T Consensus 1311 ~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~y--g-~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~l 1387 (2695)
T 4akg_A 1311 LSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKY--G-SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHI 1387 (2695)
T ss_dssp HHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSS--S-CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEE
T ss_pred HHHHHHHhhhccccCCccccCCCCCceEEEEeccccccccccc--C-chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEE
Confidence 333332210 11246999999986332221 2 1234566777775422 1 11 26899
Q ss_pred EEeeCCCC-----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 380 VLATNRPG-----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 380 I~ttn~~~-----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
|+|+|++. .++++|+||| .++.++.|+.+++..|+..++..+.
T Consensus 1388 IaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1388 VGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp EEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHHT
T ss_pred EEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999984 7999999999 8999999999999999999998764
No 87
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.25 E-value=4.5e-11 Score=124.13 Aligned_cols=220 Identities=14% Similarity=0.058 Sum_probs=127.9
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHH-HHHhCCCeeEEecCCcc--cchhh---H--H
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREI-ARKSGLDYAMMTGGDVA--PLGAQ---A--V 319 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~al-a~~l~~~~~~v~~~~~~--~~~~~---~--~ 319 (523)
|+|++.++..+.-.+. .+.......-|+||.|+||| ||++|+++ +..+.... +..+.... .+.+. . .
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~ 289 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGW 289 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSE
T ss_pred cCCCHHHHHHHHHHHc---CCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCc
Confidence 8999888776654322 11000011126999999999 99999999 77654322 22221000 00000 0 0
Q ss_pred HHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC------CCCCCEEEEEeeCCCC------
Q 009856 320 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------DQSRDIVLVLATNRPG------ 387 (523)
Q Consensus 320 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------~~~~~v~iI~ttn~~~------ 387 (523)
..-.+.+. ...++++||||++.+ +...+..|...++.-. ..+.++.||+|+|...
T Consensus 290 ~~~~G~l~----LAdgGvl~lDEIn~~---------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~ 356 (506)
T 3f8t_A 290 ALRAGAAV----LADGGILAVDHLEGA---------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDP 356 (506)
T ss_dssp EEEECHHH----HTTTSEEEEECCTTC---------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSC
T ss_pred ccCCCeeE----EcCCCeeehHhhhhC---------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCC
Confidence 00011121 123579999999986 5566777777765421 2245788999999865
Q ss_pred -----CCcHHHhccccceEe-ecCCCHHHHH---------HHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCC
Q 009856 388 -----DLDSAITDRIDEVIE-FPLPREEERF---------KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 452 (523)
Q Consensus 388 -----~l~~al~~Rf~~~i~-~~~p~~~er~---------~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (523)
.|++++++|||..+. ++.|+.+.-. ..+..|..... ...+ ...++
T Consensus 357 s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar-------------------~~~~-~p~ls 416 (506)
T 3f8t_A 357 PIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI-------------------REHP-APELT 416 (506)
T ss_dssp GGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH-------------------HHCS-CCEEC
T ss_pred CccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH-------------------hcCC-CceeC
Confidence 789999999986544 4555544321 11222111110 0000 01244
Q ss_pred HHHHHHHHH-----------------HCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHh
Q 009856 453 DNVIQEAAR-----------------KTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 505 (523)
Q Consensus 453 ~~~l~~la~-----------------~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~~~~ 505 (523)
++..+.|.. ..-|.|+|.+..|+..+++.|.......++.+|+..++.-+...
T Consensus 417 ~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 417 EEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 443333321 23478999999999999999999999999999999999987653
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.20 E-value=4.1e-11 Score=110.22 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=78.7
Q ss_pred ccccCCCcccC-HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEecCCcccch
Q 009856 241 AIKNNGDIILH-PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPLG 315 (523)
Q Consensus 241 ~~~~~~~vig~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~~~~~~~~ 315 (523)
...+|+++++. +.....+..+...+.+.... +..+++|+||||||||+++++++..+ |..++.+++.++....
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 34688999884 45555555555544443222 24579999999999999999999887 5566666654432210
Q ss_pred hhHHH--HHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 316 AQAVT--KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 316 ~~~~~--~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
..... .....+. ....+.+|||||++.. +.+...+..+..++..... .+..+|+|||.+.
T Consensus 83 ~~~~~~~~~~~~~~---~~~~~~llilDE~~~~-------~~~~~~~~~l~~ll~~~~~--~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 83 KHLMDEGKDTKFLK---TVLNSPVLVLDDLGSE-------RLSDWQRELISYIITYRYN--NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTCCSHHHH---HHHTCSEEEEETCSSS-------CCCHHHHHHHHHHHHHHHH--TTCEEEEECCCCS
T ss_pred HHHhcCchHHHHHH---HhcCCCEEEEeCCCCC-------cCCHHHHHHHHHHHHHHHH--cCCCEEEEcCCCh
Confidence 00000 0001111 1224679999999853 2345556666666654421 2346888888754
No 89
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.15 E-value=5.3e-10 Score=113.66 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=126.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CC-CeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchh-hhhh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GL-DYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA-FLCE 349 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~-~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~-l~~~ 349 (523)
.+.+|||||+|+||++.+..+++.+ +. ++..+... +......+........-..+..|++|||++. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-----PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-----TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT-
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-----CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh-
Confidence 3469999999999999999998875 32 22222111 1122233333333333344568999999987 521
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 350 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 350 ~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
...+.++..+..++.++++|++++.++ .+.+++.+|+ .++.|.+|+..+....+...+....
T Consensus 92 -----------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 92 -----------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp -----------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTT
T ss_pred -----------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 244556666676777888888776533 4668888999 7999999999999999999887765
Q ss_pred cCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 009856 424 CSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 502 (523)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~it~e~~~~~l~~~ 502 (523)
. .++++.+..|+..+.| |++.+.+.++..+...++..||.+++..++...
T Consensus 160 ~-------------------------~i~~~a~~~l~~~~~g----dl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 160 L-------------------------ELDDAANQVLCYCYEG----NLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp C-------------------------EECHHHHHHHHHSSTT----CHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred C-------------------------CCCHHHHHHHHHHhch----HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 4 4789999999999988 666666665555543345689999998887654
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.07 E-value=6.4e-09 Score=104.99 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcc------cc-----
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA------PL----- 314 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~------~~----- 314 (523)
..++|.+.....+...+.. + +.++|+||+|+|||++++.+++..+ ++++++.... +.
T Consensus 12 ~~~~gR~~el~~L~~~l~~-------~---~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN-------Y---PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH-------C---SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhc-------C---CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHH
Confidence 6789998888887766542 1 4699999999999999999999875 5666543221 00
Q ss_pred ------h----------------hh----HHHHHHHHHHH----HHhcCCceEEEEccchhhhhhcccccCcHHHHHHHH
Q 009856 315 ------G----------------AQ----AVTKIHEIFDW----AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN 364 (523)
Q Consensus 315 ------~----------------~~----~~~~l~~~f~~----a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~ 364 (523)
. +. ....+..++.. +.... +.+|||||++.+..... ..+......+.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~--~~~~~~~~~L~ 156 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGS--RGGKELLALFA 156 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTT--TTTHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCc--cchhhHHHHHH
Confidence 0 00 00111222222 21123 78999999998743100 01223334454
Q ss_pred HHHHHhCCCCCCEEEEEeeCCCC---------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhccCCCCCCCchhh
Q 009856 365 ALLFRTGDQSRDIVLVLATNRPG---------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKW 435 (523)
Q Consensus 365 ~ll~~~~~~~~~v~iI~ttn~~~---------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~ 435 (523)
.+++.. .++.+|+|+.... .....+..|+...+.+++.+.++...++...+.....
T Consensus 157 ~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~----------- 221 (350)
T 2qen_A 157 YAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL----------- 221 (350)
T ss_dssp HHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-----------
T ss_pred HHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-----------
Confidence 444332 4677888765421 1122344466568999999999999998877654322
Q ss_pred hhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHH
Q 009856 436 GHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMA 476 (523)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~ 476 (523)
.++++.+..+...|.|++. -+..++.
T Consensus 222 --------------~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 222 --------------DVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp --------------CCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred --------------CCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 2456677777777777543 4555443
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=6.9e-10 Score=99.06 Aligned_cols=106 Identities=14% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhc
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 350 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~ 350 (523)
+...++|+||+|+|||+++++++..+ |.+.+++++.++... .+ ...+.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~~-----~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------DA-----AFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------GG-----GGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------HH-----HhCCCEEEEeCccccCh--
Confidence 44579999999999999999999987 777888888776543 01 12357999999987532
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeC-CCCCCc--HHHhccccceEeec
Q 009856 351 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGDLD--SAITDRIDEVIEFP 404 (523)
Q Consensus 351 ~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn-~~~~l~--~al~~Rf~~~i~~~ 404 (523)
..+..+..++....... ..++|+||| .+..+. +.+.+|+..-+.+.
T Consensus 98 -------~~~~~l~~li~~~~~~g-~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 98 -------EEQALLFSIFNRFRNSG-KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp -------HHHHHHHHHHHHHHHHT-CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred -------HHHHHHHHHHHHHHHcC-CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 12444555554432221 223666776 444332 89999986544443
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.02 E-value=5.2e-10 Score=104.62 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=60.1
Q ss_pred ccccCCCcccCH-HHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCcccchh
Q 009856 241 AIKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 316 (523)
Q Consensus 241 ~~~~~~~vig~~-~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~~~~ 316 (523)
...+|+++++.+ .....+..+...+..... ..++.+++|+||||||||++|++++..+ +.+++.++++.+.....
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 356889999865 333344444333332211 1123689999999999999999999988 67777777654321000
Q ss_pred hH--HHHHHHHHHHHHhcCCceEEEEccchhh
Q 009856 317 QA--VTKIHEIFDWAKKSKKGLLLFIDEADAF 346 (523)
Q Consensus 317 ~~--~~~l~~~f~~a~~~~~~~vL~iDEid~l 346 (523)
.. ...+...+.... .+.+|||||++..
T Consensus 99 ~~~~~~~~~~~~~~~~---~~~~lilDei~~~ 127 (202)
T 2w58_A 99 HSLQDQTMNEKLDYIK---KVPVLMLDDLGAE 127 (202)
T ss_dssp HC---CCCHHHHHHHH---HSSEEEEEEECCC
T ss_pred HHhccchHHHHHHHhc---CCCEEEEcCCCCC
Confidence 00 000112222222 1359999999764
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.99 E-value=1.6e-08 Score=102.27 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=97.7
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc-----ccch---h
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-----APLG---A 316 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~-----~~~~---~ 316 (523)
...++|.+.....+.. +. . +.++|+||+|+|||++++.+++.++.+++++++... .+.. .
T Consensus 12 ~~~~~gR~~el~~L~~-l~---~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR---A--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC---S--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hc---C--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHH
Confidence 3678898877666654 32 1 369999999999999999999998877777776532 1100 0
Q ss_pred h---------------------------------------HHHHHHHHHHHHHhcC-CceEEEEccchhhhhhcccccCc
Q 009856 317 Q---------------------------------------AVTKIHEIFDWAKKSK-KGLLLFIDEADAFLCERNSIHMS 356 (523)
Q Consensus 317 ~---------------------------------------~~~~l~~~f~~a~~~~-~~~vL~iDEid~l~~~~~~~~~~ 356 (523)
. ....+..++....... .+.+|||||++.+....+ .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~-~--- 155 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG-V--- 155 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT-C---
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc-h---
Confidence 0 0011233443333322 378999999999754111 1
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC---------CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhh
Q 009856 357 EAQRSALNALLFRTGDQSRDIVLVLATNRPG---------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 422 (523)
Q Consensus 357 ~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~---------~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~ 422 (523)
.....+..+.... .++.+|+|++... .....+..|+...+.+++++.++...++...+...
T Consensus 156 -~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~ 225 (357)
T 2fna_A 156 -NLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA 225 (357)
T ss_dssp -CCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc
Confidence 1123344444331 3677888876432 11223444665789999999999999998877543
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.97 E-value=1.6e-09 Score=100.70 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=63.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 354 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~ 354 (523)
.+++|||||||||||++|.++|+.++..++.+..+.. ... + .......|++|||+|.-..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~----------l---~~l~~~kIiiLDEad~~~~------ 117 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW----------L---EPLTDTKVAMLDDATTTCW------ 117 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG----------G---GGGTTCSSEEEEEECHHHH------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh----------h---cccCCCCEEEEECCCchhH------
Confidence 3579999999999999999999998654332211110 000 0 0111245899999985210
Q ss_pred CcHHHHHHHHHHHHHh----CCCC------CCEEEEEeeCCC---CCCcHHHhccccceEeecCC
Q 009856 355 MSEAQRSALNALLFRT----GDQS------RDIVLVLATNRP---GDLDSAITDRIDEVIEFPLP 406 (523)
Q Consensus 355 ~~~~~~~~l~~ll~~~----~~~~------~~v~iI~ttn~~---~~l~~al~~Rf~~~i~~~~p 406 (523)
......+..++... +... ....+|+|||.. +..-+.|.||+ .++.|+.|
T Consensus 118 --~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 118 --TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp --HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred --HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 11122333444331 1111 124689999973 33447889999 78888865
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.90 E-value=1.1e-07 Score=117.85 Aligned_cols=147 Identities=17% Similarity=0.227 Sum_probs=106.3
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 325 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~ 325 (523)
..+|-.|...+.+..+..++... .++++.||||||||++++++|+.+|.+++.++|++-... ..+..+
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~-----~~lg~~ 690 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY-----QVLSRL 690 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH-----HHHHHH
T ss_pred CcceecHHHHHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh-----hHhhHH
Confidence 45777788877777766655432 248999999999999999999999999999999874432 234556
Q ss_pred HHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH----h----------C---CCCCCEEEEEeeCC---
Q 009856 326 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR----T----------G---DQSRDIVLVLATNR--- 385 (523)
Q Consensus 326 f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~----~----------~---~~~~~v~iI~ttn~--- 385 (523)
|..+... |++++|||++.+ +.....++...+.. + + .-..++.|++|.|+
T Consensus 691 ~~g~~~~--Gaw~~~DE~nr~---------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~ 759 (2695)
T 4akg_A 691 LVGITQI--GAWGCFDEFNRL---------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN 759 (2695)
T ss_dssp HHHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS
T ss_pred HHHHHhc--CCEeeehhhhhc---------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc
Confidence 6665543 579999999986 33444444333221 1 0 12346778899984
Q ss_pred -CCCCcHHHhccccceEeecCCCHHHHHHHHH
Q 009856 386 -PGDLDSAITDRIDEVIEFPLPREEERFKLLK 416 (523)
Q Consensus 386 -~~~l~~al~~Rf~~~i~~~~p~~~er~~il~ 416 (523)
...+++++.+|| ..|.+..|+.+...+|+-
T Consensus 760 g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 760 GRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp SSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred CcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 347999999999 789999999988877753
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.88 E-value=1.4e-08 Score=126.12 Aligned_cols=165 Identities=16% Similarity=0.259 Sum_probs=102.3
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHH-HhCCCeeEEecCCcccchhhHHHHH
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR-KSGLDYAMMTGGDVAPLGAQAVTKI 322 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~-~l~~~~~~v~~~~~~~~~~~~~~~l 322 (523)
.|.+++.+..--.+...++...-.. +. +|||+||||||||+++..+.. ..+.+++.++++.-.. ...+
T Consensus 1279 ~~~~ilVPT~DTvR~~~ll~~ll~~---~~---pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt-----a~~l 1347 (3245)
T 3vkg_A 1279 ASPDVVIPTVDTTRHVDVLHAWLSE---HR---PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT-----PELL 1347 (3245)
T ss_dssp TCTTCCCCCHHHHHHHHHHHHHHHT---TC---CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC-----HHHH
T ss_pred CcccceecchHHHHHHHHHHHHHHC---CC---cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC-----HHHH
Confidence 4556665533333333343333222 22 399999999999987765444 3366677777765432 1223
Q ss_pred HHHHHHH----Hh-----------cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC--C-------CCCCEE
Q 009856 323 HEIFDWA----KK-----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--D-------QSRDIV 378 (523)
Q Consensus 323 ~~~f~~a----~~-----------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~-------~~~~v~ 378 (523)
.+.+... .. ..+..|+||||++.-.. +..+ .......|..+++.-+ . .-.++.
T Consensus 1348 ~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~--D~yG-tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~ 1424 (3245)
T 3vkg_A 1348 LKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPST--DKYG-TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQ 1424 (3245)
T ss_dssp HHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCC--CTTS-CCHHHHHHHHHHHHSEEEETTTTEEEEESSEE
T ss_pred HHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCc--cccc-cccHHHHHHHHHHcCCeEECCCCeEEEecCeE
Confidence 3333211 00 01236899999986322 2122 1234566777776532 1 113688
Q ss_pred EEEeeCCCC-----CCcHHHhccccceEeecCCCHHHHHHHHHHHHHhhc
Q 009856 379 LVLATNRPG-----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 423 (523)
Q Consensus 379 iI~ttn~~~-----~l~~al~~Rf~~~i~~~~p~~~er~~il~~~l~~~~ 423 (523)
+|+|+|++. .++++|.+|| .++.++.|+.++...|+..++....
T Consensus 1425 ~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~~ps~esL~~If~til~~~l 1473 (3245)
T 3vkg_A 1425 FVGACNPPTDAGRVQLTHRFLRHA-PILLVDFPSTSSLTQIYGTFNRALM 1473 (3245)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTC-CEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCccCCHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999873 6999999999 7899999999999999998877643
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.83 E-value=3.3e-09 Score=99.25 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=78.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHH--------hC-CCeeEEecCCccc-ch----------hhHHH--HHHHHHHHH-HhcC
Q 009856 277 NMLFYGPPGTGKTMVAREIARK--------SG-LDYAMMTGGDVAP-LG----------AQAVT--KIHEIFDWA-KKSK 333 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~--------l~-~~~~~v~~~~~~~-~~----------~~~~~--~l~~~f~~a-~~~~ 333 (523)
.+|++|+||||||++|..++.. .| ++++..++.++.. .. ..... ....++.++ ....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5899999999999999886433 34 6665555443321 10 00000 112333442 1123
Q ss_pred CceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhC-CCCCCEEEEEeeCCCCCCcHHHhccccceEeecCCCHH
Q 009856 334 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREE 409 (523)
Q Consensus 334 ~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~p~~~ 409 (523)
.++||||||++.+++.+...... . .++..+. .....+.||++|+.+..++.++++|+...++++.|...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~---~----rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKI---P----ENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCC---C----HHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred CceEEEEEChhhhccCccccchh---H----HHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 47899999999997654321101 1 1222222 33456778999999999999999999999999876543
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.78 E-value=1.6e-09 Score=108.48 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=55.9
Q ss_pred cccCCCcccCH-HHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC----CCeeEEecCCccc-ch
Q 009856 242 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTGGDVAP-LG 315 (523)
Q Consensus 242 ~~~~~~vig~~-~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~----~~~~~v~~~~~~~-~~ 315 (523)
..+|+++++.+ .....+..+...+.... ..+..+++|+||||||||++|.++|..+. .+++.++++.+.. +.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP--SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS--CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc--ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 36889998755 33333333333333221 11346899999999999999999998664 6777776654321 00
Q ss_pred h-hHHHHHHHHHHHHHhcCCceEEEEccchhh
Q 009856 316 A-QAVTKIHEIFDWAKKSKKGLLLFIDEADAF 346 (523)
Q Consensus 316 ~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l 346 (523)
. ...+.+...+.... ...+|||||++..
T Consensus 198 ~~~~~~~~~~~~~~~~---~~~lLiiDdig~~ 226 (308)
T 2qgz_A 198 NAISNGSVKEEIDAVK---NVPVLILDDIGAE 226 (308)
T ss_dssp CCCC----CCTTHHHH---TSSEEEEETCCC-
T ss_pred HHhccchHHHHHHHhc---CCCEEEEcCCCCC
Confidence 0 00001111122111 2459999999754
No 99
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.75 E-value=2.2e-08 Score=78.85 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=63.7
Q ss_pred cCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 009856 404 PLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY 483 (523)
Q Consensus 404 ~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~ 483 (523)
|+|+.++|..||+.++.+... .++.++..||..|+||||+||..+|+.+...++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~--------------------------~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~ 54 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL--------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYAL 54 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE--------------------------CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCC--------------------------CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999999987654 123368999999999999999999987777777
Q ss_pred cCCCCccCHHHHHHHHHHHHH
Q 009856 484 ARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 484 ~~~~~~it~e~~~~~l~~~~~ 504 (523)
......|+.+||..+++....
T Consensus 55 ~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 55 RERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HTTCSEECHHHHHHHHHHHHC
T ss_pred HhCCCCCCHHHHHHHHHHHHh
Confidence 777789999999999998753
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.69 E-value=1e-07 Score=92.63 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=71.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhccccc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 354 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~ 354 (523)
.++++||||||||||++|.+||..++. +-.++.+.-.. .|. ......|++.||.... .
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~~f-----------~l~---~~~~k~i~l~Ee~~~~-~------ 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNENF-----------PFN---DCVDKMVIWWEEGKMT-A------ 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCSSC-----------TTG---GGSSCSEEEECSCCEE-T------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccccc-----------ccc---cccccEEEEeccccch-h------
Confidence 457999999999999999999997644 22223221100 111 1122346666666542 1
Q ss_pred CcHHHHHHHHHHHHH----hC-C-----CCCCEEEEEeeCCC-----------CCCcHHHhccccceEeec--------C
Q 009856 355 MSEAQRSALNALLFR----TG-D-----QSRDIVLVLATNRP-----------GDLDSAITDRIDEVIEFP--------L 405 (523)
Q Consensus 355 ~~~~~~~~l~~ll~~----~~-~-----~~~~v~iI~ttn~~-----------~~l~~al~~Rf~~~i~~~--------~ 405 (523)
.....+..++.. ++ . ......+|+|||.. +...++|.+|+ .++.|+ +
T Consensus 162 ---d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~ 237 (267)
T 1u0j_A 162 ---KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGK 237 (267)
T ss_dssp ---TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCC
T ss_pred ---HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCC
Confidence 112234444431 11 1 11345788999861 25668899998 888887 6
Q ss_pred CCHHHHHHHHHHH
Q 009856 406 PREEERFKLLKLY 418 (523)
Q Consensus 406 p~~~er~~il~~~ 418 (523)
.+.++....+...
T Consensus 238 lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 238 VTKQEVKDFFRWA 250 (267)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7888888888744
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.64 E-value=1.6e-08 Score=100.71 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=60.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEec--CCc-ccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhhhcc
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG--GDV-APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN 351 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~--~~~-~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~ 351 (523)
...++|+||||||||+||..+|...|.+..+++. .+. ..+..+....+..++...... + +||||+++.+.....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGAAG 199 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEecccccccccc
Confidence 3457999999999999999999876555333333 221 111122333344444444433 2 999999999865433
Q ss_pred cc----cCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHH
Q 009856 352 SI----HMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA 392 (523)
Q Consensus 352 ~~----~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~a 392 (523)
.. ......+..+..+..... ..++.+|+++|. ...+++
T Consensus 200 ~~s~~G~v~~~lrqlL~~L~~~~k--~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 200 GNTTSGGISRGAFDLLSDIGAMAA--SRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp -------CCHHHHHHHHHHHHHHH--HHTCEEEEECCC-SSCSSS
T ss_pred cccccchHHHHHHHHHHHHHHHHh--hCCCEEEEEeCC-cccchh
Confidence 21 112223444444433322 235678888884 444444
No 102
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.62 E-value=4.5e-08 Score=78.53 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=63.9
Q ss_pred eecCCCHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 009856 402 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 481 (523)
Q Consensus 402 ~~~~p~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a 481 (523)
.-.+|+.++|..||+.++.+... -++.++..||..|+||||+||..+|+.+...
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l--------------------------~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~ 60 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNL--------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMY 60 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEE--------------------------CTTCCCHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCC--------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999987654 1233578999999999999999999876666
Q ss_pred HHcCCCCccCHHHHHHHHHHHHH
Q 009856 482 VYARPDCVLDSQLFREVVEYKVE 504 (523)
Q Consensus 482 ~~~~~~~~it~e~~~~~l~~~~~ 504 (523)
++......|+.+||..+++...|
T Consensus 61 alr~~~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 61 ALRERRVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCHHHHHHHHHHHcc
Confidence 66666789999999999998865
No 103
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.59 E-value=1.3e-07 Score=112.40 Aligned_cols=145 Identities=11% Similarity=0.122 Sum_probs=86.7
Q ss_pred ccccccCCCcccCHHHHHHHHHHHHHHhc--------------chh-----------------cCCCCce--EEEEcCCC
Q 009856 239 VEAIKNNGDIILHPSLQRRIQHLAKATAN--------------TKI-----------------HQAPFRN--MLFYGPPG 285 (523)
Q Consensus 239 ~~~~~~~~~vig~~~~~~~l~~~~~~~~~--------------~~~-----------------~~~p~~~--vLL~GppG 285 (523)
..+...|.+|-|.+.++..+...+.+.-. ... .+.+|++ +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 44568899999998888777665543221 011 1334445 99999999
Q ss_pred CchHHHHHHHHHHh---CCCeeEEecCCcc-------------cchhh----HHHHHHHHHHHHHhcCCceEEEEccchh
Q 009856 286 TGKTMVAREIARKS---GLDYAMMTGGDVA-------------PLGAQ----AVTKIHEIFDWAKKSKKGLLLFIDEADA 345 (523)
Q Consensus 286 tGKT~lA~ala~~l---~~~~~~v~~~~~~-------------~~~~~----~~~~l~~~f~~a~~~~~~~vL~iDEid~ 345 (523)
||||+||++++.+. |.|.++++..... .+..+ ....+..+|..|+.. .+++||+|++++
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~-~~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAA 1171 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCGGG
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc-CCeEEEeCchHh
Confidence 99999999999876 5666666654422 12223 566777777777654 489999999999
Q ss_pred hhhhccc----cc-CcHHHHHHHHHHHHHhCC--CCCCEEEEEeeCC
Q 009856 346 FLCERNS----IH-MSEAQRSALNALLFRTGD--QSRDIVLVLATNR 385 (523)
Q Consensus 346 l~~~~~~----~~-~~~~~~~~l~~ll~~~~~--~~~~v~iI~ttn~ 385 (523)
|++.+.. +. ......++++.++..++. ...+++|| +||.
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 9988431 11 123445568888877652 23456666 6664
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.46 E-value=1.9e-06 Score=107.45 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=103.0
Q ss_pred CCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHH
Q 009856 246 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 325 (523)
Q Consensus 246 ~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~ 325 (523)
..+|-.|-..+....+..++... .+..+.||+|||||.+++.+|+.+|.+++.++|++-... ..+..+
T Consensus 582 ~rLViTPLTdrcy~tl~~Al~~~-------~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~-----~~~g~i 649 (3245)
T 3vkg_A 582 ERLVQTPLTDRCYLTLTQALESR-------MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL-----QAMSRI 649 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTT-------CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH-----HHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHhc-------CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH-----HHHHHH
Confidence 35666677777766666655432 135789999999999999999999999999999874432 234556
Q ss_pred HHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHH-----------h----C---CCCCCEEEEEeeCC--
Q 009856 326 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----------T----G---DQSRDIVLVLATNR-- 385 (523)
Q Consensus 326 f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----------~----~---~~~~~v~iI~ttn~-- 385 (523)
|..+... |+..++|||+.+ ......++...+.. + + .-..++.|++|.|+
T Consensus 650 ~~G~~~~--GaW~cfDEfNrl---------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY 718 (3245)
T 3vkg_A 650 FVGLCQC--GAWGCFDEFNRL---------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY 718 (3245)
T ss_dssp HHHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG
T ss_pred HhhHhhc--CcEEEehhhhcC---------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc
Confidence 6665543 678999999986 33333333332221 0 1 01236778899985
Q ss_pred --CCCCcHHHhccccceEeecCCCHHHHHHHH
Q 009856 386 --PGDLDSAITDRIDEVIEFPLPREEERFKLL 415 (523)
Q Consensus 386 --~~~l~~al~~Rf~~~i~~~~p~~~er~~il 415 (523)
...|++.+.+|| ..|.+..|+.+...+|+
T Consensus 719 ~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 719 AGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp GGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred cCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 358999999999 77999999998887764
No 105
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.40 E-value=2.6e-07 Score=74.47 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCC
Q 009856 407 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 486 (523)
Q Consensus 407 ~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~ 486 (523)
+.++|..||+.++.+... -++.++..||..|+||||+||..+|+.+...+....
T Consensus 2 d~~~R~~Il~~~~~~~~~--------------------------~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV--------------------------ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB--------------------------CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCC--------------------------CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 457899999999887544 123358999999999999999999986666666556
Q ss_pred CCccCHHHHHHHHHHHHHhhhhcc
Q 009856 487 DCVLDSQLFREVVEYKVEEHHQRI 510 (523)
Q Consensus 487 ~~~it~e~~~~~l~~~~~~~~~~~ 510 (523)
...|+.+||..+++...+....+.
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC------
T ss_pred cccCCHHHHHHHHHHHhcCccccc
Confidence 678999999999999988766554
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.37 E-value=1.5e-06 Score=79.64 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=22.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
.+.|.||+|+|||||++.|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999987643
No 107
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.30 E-value=6.9e-07 Score=71.05 Aligned_cols=75 Identities=7% Similarity=0.119 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCC
Q 009856 407 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 486 (523)
Q Consensus 407 ~~~er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~ 486 (523)
+.++|..||+.++.+... .++.++..||..|+||||+||..+|..+...+....
T Consensus 2 d~~~R~~Il~~~l~~~~~--------------------------~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNL--------------------------SEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCB--------------------------CTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCC--------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678999999999987643 123358899999999999999999986666666666
Q ss_pred CCccCHHHHHHHHHHHHHhhh
Q 009856 487 DCVLDSQLFREVVEYKVEEHH 507 (523)
Q Consensus 487 ~~~it~e~~~~~l~~~~~~~~ 507 (523)
...||.+||..++....|...
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 678999999999999988654
No 108
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.10 E-value=2.6e-05 Score=84.71 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHH
Q 009856 245 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 245 ~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~ 297 (523)
...+||-+.....|...+... ....+.++|+||+|+|||++|..++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 367999998888887665421 12235699999999999999999864
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.95 E-value=1.4e-05 Score=96.43 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=50.2
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------ch-----------hhHHHHHHHHHHHHHhc
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG-----------AQAVTKIHEIFDWAKKS 332 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~-----------~~~~~~l~~~f~~a~~~ 332 (523)
.+..+++|+||||||||+||.+++... |....+++...... ++ ......+..++..+. .
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr-~ 1503 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR-S 1503 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH-H
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh-c
Confidence 356689999999999999999997765 45556665443211 10 011233444444444 3
Q ss_pred CCceEEEEccchhhhhh
Q 009856 333 KKGLLLFIDEADAFLCE 349 (523)
Q Consensus 333 ~~~~vL~iDEid~l~~~ 349 (523)
..+++||||+++.+.+.
T Consensus 1504 ~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp TCCSEEEESCGGGCCCH
T ss_pred CCCCEEEEcChhHhccc
Confidence 45799999999988774
No 110
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.95 E-value=4.8e-06 Score=85.31 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=59.2
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhhh-hc
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLC-ER 350 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~-~~ 350 (523)
.++...++|+||||+||||++++++..++..++.+..+.- . ..-.+..+ ....++|+||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~---~--~~~~lg~~-------~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD---R--LNFELGVA-------IDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT---T--HHHHHGGG-------TTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch---h--HHHHHHHh-------cchhHHHHHHHHHHHHHHh
Confidence 4455679999999999999999999988776554322210 0 00011111 1235679999998764 22
Q ss_pred ccccCcHH-HHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhc
Q 009856 351 NSIHMSEA-QRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD 395 (523)
Q Consensus 351 ~~~~~~~~-~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~ 395 (523)
........ ....+...+. +.+.+++++|+++.+ +++++
T Consensus 234 ~l~~~~~~~~~~~l~~~ld------G~v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 234 DLPSGQGINNLDNLRDYLD------GSVKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp TCCCCSHHHHHHTTHHHHH------CSSCEEECCSSSCCE-EECCC
T ss_pred hccccCcchHHHHHHHHhc------CCCeEeeccCchhhH-HHhhc
Confidence 11110110 1122223321 234577888888877 45544
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.93 E-value=3.1e-06 Score=77.91 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v 306 (523)
-++++||||+|||+++..++..+ |..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999996666553 5544443
No 112
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.82 E-value=2.7e-06 Score=67.46 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchhhhhhhhhhhhhhhhccCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 009856 410 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 489 (523)
Q Consensus 410 er~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~~~a~~~~~~~~ 489 (523)
+|..||+.++.+... .++.++..||..|+||||+||..+|+.+...+.......
T Consensus 2 ~R~~Il~~~l~~~~~--------------------------~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~ 55 (82)
T 2dzn_B 2 ERRLIFGTIASKMSL--------------------------APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 55 (82)
T ss_dssp ------------CEE--------------------------CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCCC--------------------------CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 577888888876543 122247789999999999999999986666666666678
Q ss_pred cCHHHHHHHHHHHHH
Q 009856 490 LDSQLFREVVEYKVE 504 (523)
Q Consensus 490 it~e~~~~~l~~~~~ 504 (523)
|+.+||..++.....
T Consensus 56 i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 56 ILQSDLEEAYATQVK 70 (82)
T ss_dssp ECHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHc
Confidence 999999999998753
No 113
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.80 E-value=0.00019 Score=67.72 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=67.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc---------ch----------hh--HHHHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP---------LG----------AQ--AVTKIHEIFDWAKK 331 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~---------~~----------~~--~~~~l~~~f~~a~~ 331 (523)
.++++.|+||||||+++-.+|..+ |..++.+....-.. +. +. ....+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 359999999999999999998776 66665544322000 00 00 001122222 1
Q ss_pred cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCC------------------CCCcHHH
Q 009856 332 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP------------------GDLDSAI 393 (523)
Q Consensus 332 ~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~------------------~~l~~al 393 (523)
. .+.+++|||+.......... ....+ .+..++ ...+-++.|+|.. +.++..+
T Consensus 83 ~-~pdlvIVDElG~~~~~~~r~--~~~~q-DV~~~l------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~ 152 (228)
T 2r8r_A 83 A-APSLVLVDELAHTNAPGSRH--TKRWQ-DIQELL------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWV 152 (228)
T ss_dssp H-CCSEEEESCTTCBCCTTCSS--SBHHH-HHHHHH------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHH
T ss_pred c-CCCEEEEeCCCCCCcccchh--HHHHH-HHHHHH------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHH
Confidence 2 36799999987531111100 11122 222232 2345577888721 4567788
Q ss_pred hccccceEeecCCCHH
Q 009856 394 TDRIDEVIEFPLPREE 409 (523)
Q Consensus 394 ~~Rf~~~i~~~~p~~~ 409 (523)
+++.+.+..++.|+.+
T Consensus 153 ~~~a~~v~lvD~~p~~ 168 (228)
T 2r8r_A 153 LQEAFDLVLIDLPPRE 168 (228)
T ss_dssp HHTCSEEEEBCCCHHH
T ss_pred HhhCCeEEEecCCHHH
Confidence 8888777777777665
No 114
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.79 E-value=0.0005 Score=73.55 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=55.7
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC--CCcHHHhccccceEeecCCCHHHHH
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--DLDSAITDRIDEVIEFPLPREEERF 412 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~--~l~~al~~Rf~~~i~~~~p~~~er~ 412 (523)
+.+|+|||+..|+... .......+..+...- ...++.+|++|.+|. .++..+++-|...|.|...+..+-.
T Consensus 344 ~ivvVIDE~~~L~~~~-----~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr 416 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-----GKKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSR 416 (574)
T ss_dssp EEEEEESCCTTHHHHT-----CHHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHH
T ss_pred cEEEEEeCHHHHhhhh-----hHHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHH
Confidence 4689999999886532 123334444444332 456799999999987 8999999999999999999998887
Q ss_pred HHHH
Q 009856 413 KLLK 416 (523)
Q Consensus 413 ~il~ 416 (523)
.|+.
T Consensus 417 ~ILd 420 (574)
T 2iut_A 417 TILD 420 (574)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 7764
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.76 E-value=9.8e-05 Score=69.93 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCC-------ccc-chhh----HHHHHHHHHHHHHh---cCCceE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD-------VAP-LGAQ----AVTKIHEIFDWAKK---SKKGLL 337 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~-------~~~-~~~~----~~~~l~~~f~~a~~---~~~~~v 337 (523)
.-++++||||+||||++..++..+ |..++.+.... +.. ++.. .......++..+.. ...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 458889999999999998887766 55555553221 111 1110 00112234444433 234679
Q ss_pred EEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCC------CCCCcHHHhccccceEee
Q 009856 338 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------PGDLDSAITDRIDEVIEF 403 (523)
Q Consensus 338 L~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~------~~~l~~al~~Rf~~~i~~ 403 (523)
|+|||+..| +...-..+..+.. .++.||++... +-...+.|...-|.+..+
T Consensus 93 ViIDEaQ~l---------~~~~ve~l~~L~~------~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 93 IGIDEVQFF---------DDRICEVANILAE------NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp EEECSGGGS---------CTHHHHHHHHHHH------TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred EEEecCccC---------cHHHHHHHHHHHh------CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 999999875 2223334433332 14667777642 223345555554444443
No 116
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.72 E-value=3.5e-05 Score=74.47 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc
Q 009856 252 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 311 (523)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~ 311 (523)
+++...+..++..+.........+..++|.||||+||||+++.|+..++.+++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445555555555444433344455679999999999999999999999876676666544
No 117
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.69 E-value=0.00015 Score=66.97 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCC----------cccch-------------h----hHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD----------VAPLG-------------A----QAVTKIHEI 325 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~----------~~~~~-------------~----~~~~~l~~~ 325 (523)
..|++|+++|.||||+|-.+|-.. |..+..+.... +..++ . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998765 67766663211 00110 0 011222333
Q ss_pred HHHHHh---cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCCCCcHHHhccccceEe
Q 009856 326 FDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIE 402 (523)
Q Consensus 326 f~~a~~---~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~~l~~al~~Rf~~~i~ 402 (523)
+..+.. ...+.+|+|||+.....-.- .+ ...++..+...+.+.-||+|+|. .++.|+..-|.+-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l~------~~ev~~~l~~Rp~~~~vIlTGr~---ap~~l~e~AD~VTe 176 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---LP------LEEVISALNARPGHQTVIITGRG---CHRDILDLADTVSE 176 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---SC------HHHHHHHHHTSCTTCEEEEECSS---CCHHHHHHCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---CC------HHHHHHHHHhCcCCCEEEEECCC---CcHHHHHhCcceee
Confidence 433332 35678999999965422110 11 12234444456677889999988 47788877776655
Q ss_pred ec
Q 009856 403 FP 404 (523)
Q Consensus 403 ~~ 404 (523)
+.
T Consensus 177 m~ 178 (196)
T 1g5t_A 177 LR 178 (196)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.69 E-value=4.8e-05 Score=75.00 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEec
Q 009856 252 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 308 (523)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~ 308 (523)
..+...+..++............+..++|.||||+||||+++.|+..++..++.+++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 455566666665554433333445679999999999999999999988555666665
No 119
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.67 E-value=0.00016 Score=76.03 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=35.2
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 242 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 242 ~~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+.+|+++ .+.....+..+...+.... +.++|.||||||||+++.+++..+
T Consensus 20 p~~~~~L--n~~Q~~av~~~~~~i~~~~------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDL--TEGQKNAFNIVMKAIKEKK------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCC--CHHHHHHHHHHHHHHHSSS------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccC--CHHHHHHHHHHHHHHhcCC------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445554 4566666666655544321 259999999999999999999877
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.67 E-value=9.6e-05 Score=69.05 Aligned_cols=38 Identities=32% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 310 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~ 310 (523)
++...++|+||||+|||+++..++...+.++++++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34446899999999999999999986577777776544
No 121
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.67 E-value=3.5e-05 Score=69.71 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~ 308 (523)
..|+|+|+||+||||+++.|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999988876543
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.65 E-value=0.00043 Score=81.23 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=82.0
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh---C----CCeeEEecCCccc--c
Q 009856 244 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---G----LDYAMMTGGDVAP--L 314 (523)
Q Consensus 244 ~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l---~----~~~~~v~~~~~~~--~ 314 (523)
....+||-+.....|...+... ....+.+.|+|++|+|||+||..++... . ..++.++.+.... .
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 3467999998888887765421 1233568899999999999999887652 2 1233444332110 0
Q ss_pred h--------------------hhHHHHHHHHHHHHHh-cCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 009856 315 G--------------------AQAVTKIHEIFDWAKK-SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 373 (523)
Q Consensus 315 ~--------------------~~~~~~l~~~f~~a~~-~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 373 (523)
. ......+...+..... ..+..+|+||+++.. ..+.. +
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--------------~~~~~----~--- 254 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--------------WVLKA----F--- 254 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--------------HHHTT----T---
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--------------HHHHh----h---
Confidence 0 0011111122211111 123579999999752 11111 1
Q ss_pred CCCEEEEEeeCCCCCCcHHHhccccceEeecC-CCHHHHHHHHHHHH
Q 009856 374 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPL-PREEERFKLLKLYL 419 (523)
Q Consensus 374 ~~~v~iI~ttn~~~~l~~al~~Rf~~~i~~~~-p~~~er~~il~~~l 419 (523)
..+..||+||....-... + ......+.+++ ++.++-..+|..+.
T Consensus 255 ~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhh
Confidence 345578888876432211 0 11225667775 88888888888765
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.64 E-value=2.9e-05 Score=70.83 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+..|+|+|||||||||+++.||..+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35699999999999999999999999988754
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=0.00025 Score=67.54 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHH--HH--hCCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIA--RK--SGLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala--~~--l~~~~~~v~~ 308 (523)
+...+.|.||+|+|||||++.++ .. .+...+.+++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 34468999999999999999998 32 2444444443
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.57 E-value=0.00029 Score=71.79 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=48.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-c-----h----------hhHHHHHHHHHHHHHhcCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-L-----G----------AQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~-----~----------~~~~~~l~~~f~~a~~~~~ 334 (523)
+...++|+||||+|||+||..++..+ |.++++++...... . + ......+...+........
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 44568999999999999999988764 56777776543211 0 0 0112222333333333445
Q ss_pred ceEEEEccchhhhh
Q 009856 335 GLLLFIDEADAFLC 348 (523)
Q Consensus 335 ~~vL~iDEid~l~~ 348 (523)
+.+||||.+..+.+
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 78999999999874
No 126
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.56 E-value=0.00083 Score=72.27 Aligned_cols=140 Identities=15% Similarity=0.211 Sum_probs=77.3
Q ss_pred ccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHH----HhCCCe---eEEecCCcc-----c---
Q 009856 249 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR----KSGLDY---AMMTGGDVA-----P--- 313 (523)
Q Consensus 249 ig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~----~l~~~~---~~v~~~~~~-----~--- 313 (523)
+|-+.....|...+.... ....+.|.|+|++|+|||+||+.+++ .....| +.++.+... .
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 588887777776653211 22345689999999999999999996 232222 223322211 0
Q ss_pred -----chhh------------HHHHHHHHHHHHHhcCCceEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 009856 314 -----LGAQ------------AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 376 (523)
Q Consensus 314 -----~~~~------------~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 376 (523)
++.. ....+...+......++..+|+||+++.. .. + .+.. . .+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~---~-~~~~-~----~g 265 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ET---I-RWAQ-E----LR 265 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HH---H-HHHH-H----TT
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hh---h-cccc-c----CC
Confidence 0000 01111222222212222689999999763 11 1 1111 1 34
Q ss_pred EEEEEeeCCCCCCcHHHhcc---ccceEeecCCCHHHHHHHHHHH
Q 009856 377 IVLVLATNRPGDLDSAITDR---IDEVIEFPLPREEERFKLLKLY 418 (523)
Q Consensus 377 v~iI~ttn~~~~l~~al~~R---f~~~i~~~~p~~~er~~il~~~ 418 (523)
..||+||.... +... ....+.+++.+.++-..+|..+
T Consensus 266 s~ilvTTR~~~-----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 266 LRCLVTTRDVE-----ISNAASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp CEEEEEESBGG-----GGGGCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CEEEEEcCCHH-----HHHHcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 56888886532 1222 2256889999999888877765
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=4.5e-05 Score=70.74 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+...++|.|||||||||+++.|+..+|.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345799999999999999999999999887643
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.54 E-value=0.00025 Score=66.61 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
+...++|+||||+|||++++.++..+ +.++++++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33468999999999999999998654 44555444
No 129
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.53 E-value=0.00096 Score=70.72 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=52.0
Q ss_pred eEEEEccchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEeeCCCC--CCcHHHhccccceEeecCCCHHHHHH
Q 009856 336 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--DLDSAITDRIDEVIEFPLPREEERFK 413 (523)
Q Consensus 336 ~vL~iDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~iI~ttn~~~--~l~~al~~Rf~~~i~~~~p~~~er~~ 413 (523)
.+|+|||+..++... .......+..+... + ...++.+|++|.++. .++..+++-|...|.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~-----~~~~~~~l~~Lar~-g-Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-----GKKVEELIARLAQK-A-RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH-----HHHHHHHHHHHHHH-C-GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh-----hHHHHHHHHHHHHH-h-hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 589999998875421 11222333333322 2 233688899998886 68888888998999999999998888
Q ss_pred HHHH
Q 009856 414 LLKL 417 (523)
Q Consensus 414 il~~ 417 (523)
|+..
T Consensus 372 ilg~ 375 (512)
T 2ius_A 372 ILDQ 375 (512)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 7754
No 130
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.46 E-value=0.00041 Score=70.27 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------c----------hhhHHHHHHHHHHHHHhcCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------L----------GAQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~----------~~~~~~~l~~~f~~a~~~~~ 334 (523)
+...++|+||||+|||+|+..++..+ +.+++++++..... + .......+............
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 34468999999999999999998775 56677776544211 0 00111122222222223345
Q ss_pred ceEEEEccchhhhh
Q 009856 335 GLLLFIDEADAFLC 348 (523)
Q Consensus 335 ~~vL~iDEid~l~~ 348 (523)
+.+++||.+..+.+
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 67999999988875
No 131
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.46 E-value=7.9e-05 Score=66.72 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=26.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.|||||||||+++.|+..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 489999999999999999999999887543
No 132
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.45 E-value=6.9e-05 Score=68.05 Aligned_cols=30 Identities=50% Similarity=0.855 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|+|+||+||||+++.|+..++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 469999999999999999999999887764
No 133
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=0.00014 Score=67.14 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+.|.||+|+||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 134
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.45 E-value=7.3e-05 Score=68.08 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|+|+|||||||+|+.|+..+|.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 499999999999999999999999887643
No 135
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.44 E-value=7.5e-05 Score=67.01 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
..+++|.|+|||||||+++.|+..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34799999999999999999999999988743
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.44 E-value=9e-05 Score=68.60 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+..|+|.|+|||||||+|+.|+..+|.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34699999999999999999999999887654
No 137
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.41 E-value=0.00034 Score=70.84 Aligned_cols=75 Identities=27% Similarity=0.286 Sum_probs=46.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------chh----------hHHHHHHHHHHHHHhcCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LGA----------QAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~~----------~~~~~l~~~f~~a~~~~~ 334 (523)
+...++|+||||+|||+||..++... +.++++++...... ++. .....+..+.........
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998664 55666666543211 010 011222222222223345
Q ss_pred ceEEEEccchhhhh
Q 009856 335 GLLLFIDEADAFLC 348 (523)
Q Consensus 335 ~~vL~iDEid~l~~ 348 (523)
+.+||||++..+.+
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 78999999999874
No 138
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.41 E-value=8.6e-05 Score=67.12 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 139
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.39 E-value=0.00044 Score=69.26 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 310 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~ 310 (523)
+...++|+||||+|||++|..+|... +.+.++++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44568999999999999999999875 45566666544
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.39 E-value=0.00068 Score=64.17 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH--h-------CCCeeEEecCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK--S-------GLDYAMMTGGD 310 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~--l-------~~~~~~v~~~~ 310 (523)
+...++|+||||+|||+++..++.. + +...+++++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3446899999999999999999985 2 34566666554
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.38 E-value=0.00012 Score=66.94 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+..|+|.|+||+||||+++.|+..+|.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3468999999999999999999999887654
No 142
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.38 E-value=8.1e-05 Score=68.08 Aligned_cols=31 Identities=42% Similarity=0.539 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH-hCCCeeE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK-SGLDYAM 305 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~-l~~~~~~ 305 (523)
+..|+|+|+|||||||+++.|+.. +|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 346999999999999999999998 6877664
No 143
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.37 E-value=0.00051 Score=69.74 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc------ch----------hhHHHHHHHHHHHHHhcCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~ 334 (523)
+...++|+||||+|||+||..++..+ |.++++++...... ++ ......+...+........
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 44569999999999999999998764 56777777643211 00 0112233333333333345
Q ss_pred ceEEEEccchhhhh
Q 009856 335 GLLLFIDEADAFLC 348 (523)
Q Consensus 335 ~~vL~iDEid~l~~ 348 (523)
+.+||||.+..+.+
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 78999999999874
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.35 E-value=0.00011 Score=65.95 Aligned_cols=29 Identities=31% Similarity=0.787 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
..+.|+|||||||||+++.|+..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35999999999999999999999887554
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.35 E-value=0.00056 Score=82.69 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=50.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-chhh---------------HHHHHHHHHHHHHhcC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGAQ---------------AVTKIHEIFDWAKKSK 333 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~~~~---------------~~~~l~~~f~~a~~~~ 333 (523)
++..+++|+||||||||+||.+++... |.+.++++...... +... .......+.....+..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~ 1158 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1158 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhC
Confidence 355689999999999999999997654 77777777665332 1100 0111223333333445
Q ss_pred CceEEEEccchhhhhh
Q 009856 334 KGLLLFIDEADAFLCE 349 (523)
Q Consensus 334 ~~~vL~iDEid~l~~~ 349 (523)
.+.+|+||++..+.+.
T Consensus 1159 ~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1159 AVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp CCSEEEESCGGGCCCH
T ss_pred CCCEEEECCccccccc
Confidence 5889999999998654
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.30 E-value=0.00011 Score=67.29 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 310 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~ 310 (523)
...+.|.||||+||||+++.|+...+.+.+.+++.+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 346899999999999999999998777777776543
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.30 E-value=0.00013 Score=66.94 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
..|+|.|+|||||||+++.|+..+|.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999998876543
No 148
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.29 E-value=0.00033 Score=69.38 Aligned_cols=77 Identities=10% Similarity=0.150 Sum_probs=46.8
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHh-----CCCeeEEecCCccc------chh----------hHHHHH-HHHHHHH
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAP------LGA----------QAVTKI-HEIFDWA 329 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l-----~~~~~~v~~~~~~~------~~~----------~~~~~l-~~~f~~a 329 (523)
+-|+..++|+||||+|||+|+..++... +..++++++..-.. ++. .....+ ..+....
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444468999999999999988776554 55667776543211 110 111122 2222222
Q ss_pred --HhcCCceEEEEccchhhhh
Q 009856 330 --KKSKKGLLLFIDEADAFLC 348 (523)
Q Consensus 330 --~~~~~~~vL~iDEid~l~~ 348 (523)
.....+.+|+||-+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2344678999999999975
No 149
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00012 Score=65.50 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|+|||||||||+++.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888886653
No 150
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.00094 Score=67.43 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 310 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~ 310 (523)
+...++|+||||+|||++|..+|... +.+.++++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34468999999999999999999863 44566666544
No 151
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.26 E-value=0.00017 Score=64.69 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|+|.|+|||||||+++.|+..+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987664
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00018 Score=65.68 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|.|+|||||||+++.|+..+|.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999887653
No 153
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.0015 Score=61.12 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|+||||+|||||++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33458999999999999999999854
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.0002 Score=67.27 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+..|+|.|+|||||||+++.|+..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 34699999999999999999999999876543
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.24 E-value=0.00019 Score=69.32 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=27.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEec
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 308 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~ 308 (523)
.++|.|||||||||+|+.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48899999999999999999999988765543
No 156
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.0002 Score=66.35 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+..|+|.|+||+||||+++.|+..+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3469999999999999999999999876654
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00016 Score=65.78 Aligned_cols=29 Identities=34% Similarity=0.684 Sum_probs=25.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.++|.|+|||||||+++.|+..+|.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 58999999999999999999999876553
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00015 Score=65.69 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
..|+|.|+|||||||+++.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998876
No 159
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.20 E-value=0.00027 Score=63.99 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
...+.|.|++|+||||+++.|+..+ |.+++.+++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3468899999999999999999988 888887764
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.20 E-value=0.00018 Score=66.49 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+..|+|.|+|||||||+++.|+..+|.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 34689999999999999999999998766543
No 161
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.19 E-value=0.00021 Score=63.84 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|+|.|+|||||||+++.|+..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999988764
No 162
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.19 E-value=0.00019 Score=67.18 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|+|||||||||+|+.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998876644
No 163
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.19 E-value=0.00025 Score=63.88 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
...++|.||||+||||+++.|+..+|.+++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 346899999999999999999998876544
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.18 E-value=0.00018 Score=66.05 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|.|+|||||||+++.|+..+|.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 359999999999999999999999876553
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00021 Score=66.80 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.|||||||||+|+.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998877644
No 166
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00017 Score=65.06 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHH-HhCCCe
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR-KSGLDY 303 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~-~l~~~~ 303 (523)
..|+|.||||+||||+|+.|+. .++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 3589999999999999999998 455443
No 167
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.17 E-value=0.00021 Score=68.59 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
++..|+|+||||+||||+|+.|+..+|.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 445799999999999999999999998776644
No 168
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.17 E-value=0.00021 Score=65.04 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..|+|.|||||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 169
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.16 E-value=0.00025 Score=66.78 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
++.|+|.||||+||+|.|+.|++.+|.+.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 456889999999999999999999987655
No 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.14 E-value=0.0071 Score=68.87 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=33.3
Q ss_pred cccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHH
Q 009856 248 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 248 vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~ 297 (523)
.||.+.....|...+... .+.+.+.|+||+|+|||+||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~-------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 488888888877765421 1245699999999999999999985
No 171
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.14 E-value=0.00032 Score=66.66 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
+..|+|.|+|||||||+++.|+..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34699999999999999999999999776543
No 172
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.13 E-value=0.00025 Score=66.64 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
..|+|.|+|||||||+++.|+..+|.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.13 E-value=0.0002 Score=67.64 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|.|+|||||||+++.|+..+|.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 469999999999999999999999877654
No 174
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.001 Score=71.88 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v 306 (523)
+.++|+||||||||+++.+++..+ +.++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 359999999999999999998765 4555443
No 175
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.12 E-value=0.00028 Score=64.31 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|.|+|||||||+++.|+..+|.+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 468999999999999999999999876654
No 176
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.12 E-value=0.00028 Score=65.91 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=25.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.++|.||||+||+|.|+.|++.+|.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 37899999999999999999999887653
No 177
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.12 E-value=0.00026 Score=66.57 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|.||||+||||+++.|+..++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 469999999999999999999999876553
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.11 E-value=0.00032 Score=64.88 Aligned_cols=36 Identities=31% Similarity=0.656 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCCCeeEEecCCc
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 311 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~~ 311 (523)
++..+.|.||||+||||+++.|+..+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 345699999999999999999999986544 444443
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.0021 Score=60.90 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH----hCCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK----SGLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~----l~~~~~~v~~ 308 (523)
+...++|+|+||+|||++|..+|.. .+.++++++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4446899999999999999887643 2566666553
No 180
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.0027 Score=64.19 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|+||||+|||+|++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999876
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.0023 Score=60.62 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
+...++|+||||+|||+++..++... +.++++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34468999999999999998887643 455555543
No 182
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.04 E-value=0.0012 Score=63.01 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
.++|+||+|+|||.++..++..++.+++.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4999999999999999999888876666554
No 183
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0012 Score=65.75 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+...++|+||||+|||++|..+|..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999999875
No 184
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00045 Score=64.56 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.|+||+||||+++.|+..+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877654
No 185
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.01 E-value=0.00053 Score=66.37 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH---hCCCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK---SGLDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~---l~~~~~~v~~ 308 (523)
..|+|.|+||+||||+|+.|+.. .|.+++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 45899999999999999999998 6787775554
No 186
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.00 E-value=0.0017 Score=59.78 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCchH-HHHHHHHHHh--CCCeeEEec
Q 009856 275 FRNMLFYGPPGTGKT-MVAREIARKS--GLDYAMMTG 308 (523)
Q Consensus 275 ~~~vLL~GppGtGKT-~lA~ala~~l--~~~~~~v~~ 308 (523)
..-.++|||.|+||| .|.+++.+.. +..++.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 345889999999999 8888887765 566666653
No 187
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.00 E-value=0.00056 Score=62.36 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
.|.|.|+|||||||+++.|+..+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 38899999999999999999988 88877664
No 188
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.99 E-value=0.0054 Score=63.74 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc---------------------chhhHHHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP---------------------LGAQAVTKIHEIFDWA 329 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~---------------------~~~~~~~~l~~~f~~a 329 (523)
++..++|+|+||+||||++..||..+ |..+..+.+....+ .+.+....+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999876 55665555432211 1112222334445555
Q ss_pred HhcCCceEEEEccchhh
Q 009856 330 KKSKKGLLLFIDEADAF 346 (523)
Q Consensus 330 ~~~~~~~vL~iDEid~l 346 (523)
... .+.++|||-+..+
T Consensus 179 ~~~-~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSK-GVDIIIVDTAGRH 194 (443)
T ss_dssp HHT-TCSEEEEECCCCS
T ss_pred HhC-CCCEEEEECCCcc
Confidence 432 3679999988643
No 189
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.98 E-value=0.00062 Score=62.92 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.++..+.|.||||+||||+++.|+..+ |...+.+++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 344568999999999999999999988 444334444
No 190
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.96 E-value=0.00053 Score=64.43 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
.+.|.|||||||||+++.|+..+|.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999987665
No 191
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.94 E-value=0.001 Score=60.84 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 278 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
|.|.|+|||||||+++.|+..+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 988876543
No 192
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.92 E-value=0.00058 Score=62.90 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh-CCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS-GLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l-~~~~~~v~ 307 (523)
..|.|.|+|||||||+++.|+..+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 468999999999999999999998 57776654
No 193
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.91 E-value=0.00053 Score=63.07 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=25.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|.|.|+|||||||+++.|++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999986653
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.00058 Score=63.42 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
+..|+|.|+|||||||+++.|+..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346999999999999999999998753
No 195
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00055 Score=63.49 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
+..|+|.|+|||||||+++.|++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3468999999999999999999987654
No 196
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.90 E-value=0.00057 Score=64.45 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.|||||||||+++.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 389999999999999999999998765543
No 197
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.88 E-value=0.00054 Score=68.36 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
..++|+||||||||+++..||..++.+++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 36899999999999999999999987777664
No 198
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.87 E-value=0.00037 Score=63.47 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999885
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.86 E-value=0.00048 Score=63.66 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|.|+|++||||||+++.|+. +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 489999999999999999999 88776654
No 200
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.86 E-value=0.00069 Score=65.72 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...++|.||+|+||||++++++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34468999999999999999999876
No 201
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.86 E-value=0.0051 Score=63.32 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---------CCCeeEEecCC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 310 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---------~~~~~~v~~~~ 310 (523)
+...++|+||||||||+|+..++-.. +...+++++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 34468999999999999999876443 23366666544
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.84 E-value=0.0019 Score=65.42 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..++|.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 359999999999999999998876
No 203
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.0008 Score=64.03 Aligned_cols=29 Identities=41% Similarity=0.625 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
..+.|.||||+||||+++.|+..+|.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 36899999999999999999999987664
No 204
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.81 E-value=0.0011 Score=61.23 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
..|+|.|+|||||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358999999999999999999998764
No 205
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.81 E-value=0.00079 Score=62.16 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=26.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.+.|.|++||||||+++.|+..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999877643
No 206
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.81 E-value=0.00063 Score=63.02 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.+.|.|||||||||+++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 488999999999999999988 7877653
No 207
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.79 E-value=0.00082 Score=64.72 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
..+.|.|+||+||||+++.||..+|.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3599999999999999999999999887653
No 208
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.79 E-value=0.003 Score=75.56 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=51.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEecCCccc-chh---------------hHHHHHHHHHHHHHhcC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGA---------------QAVTKIHEIFDWAKKSK 333 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~~~~~~-~~~---------------~~~~~l~~~f~~a~~~~ 333 (523)
++...++|+||||||||+||..++... |.++++++...... ... .....+..++.......
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~ 111 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 111 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhcc
Confidence 445679999999999999999997653 66777777654322 000 11233344444443344
Q ss_pred CceEEEEccchhhhhh
Q 009856 334 KGLLLFIDEADAFLCE 349 (523)
Q Consensus 334 ~~~vL~iDEid~l~~~ 349 (523)
.+.+|+||.+..+...
T Consensus 112 ~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 112 AVDVIVVDSVAALTPK 127 (1706)
T ss_dssp CCSEEEESCSTTCCCH
T ss_pred CCCEEEEcchhhhccc
Confidence 5789999999998764
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.78 E-value=0.001 Score=63.67 Aligned_cols=30 Identities=37% Similarity=0.667 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
+..+.|.||||+||||+++.|+..+|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356999999999999999999999987643
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.78 E-value=0.00068 Score=62.59 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|.|+|++||||||+++.|+..+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 488999999999999999999988877643
No 211
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.77 E-value=0.0042 Score=65.07 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
.+..-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 344568999999999999999998754 557776654
No 212
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.75 E-value=0.0053 Score=59.73 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...++|+||||+|||+|+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998654
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.71 E-value=0.0089 Score=62.00 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++..++|.||+|+||||++..||..+ |..+..+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35678999999999999999999776 555555543
No 214
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.71 E-value=0.00087 Score=64.40 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCe
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDY 303 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~ 303 (523)
+..|.|.|+|||||||+|+.|+..+|.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34689999999999999999999998763
No 215
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.0015 Score=59.38 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
++..++|.|+||+||||+++.|+..+ |.++..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 34568999999999999999999987 34454454
No 216
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=60.87 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+..|.|.|++||||||+++.|+.. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 346899999999999999999998 776653
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.001 Score=61.61 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.++..++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455699999999999999999999874
No 218
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.65 E-value=0.0013 Score=63.25 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
..+.|.||+||||||+++.|+..+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45899999999999999999999988765
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.63 E-value=0.0018 Score=64.91 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=41.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecCCccc---------chhhHHHHHHHHHHHHHhcCCceEEEEccchh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP---------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA 345 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~~~~~---------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~ 345 (523)
.++|.||+|+||||++++|+..+.. ..+.+.+..... +...........+..+... .|.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~-~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRM-RPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTS-CCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhh-CCCEEEEcCCCh
Confidence 5999999999999999999988732 244444432110 0000112233344444444 467999999853
No 220
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.015 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+...|+|.|++|+|||+|+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.59 E-value=0.01 Score=58.45 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
++..++|.||+|+||||++..||..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34579999999999999999998765 445555554
No 222
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.56 E-value=0.0012 Score=66.53 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.+++|+||||+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888744
No 223
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.55 E-value=0.0018 Score=61.47 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
++..+.|.|++||||||+++.|+..+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568999999999999999999999977653
No 224
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.0042 Score=57.32 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
++..+.|.||+|+||||+++.|+..+ +.+++.++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 33468899999999999999999876 55555443
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.53 E-value=0.0011 Score=66.48 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+.|+|.||+|||||+|+..||+.++.+++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 36899999999999999999999987666544
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.52 E-value=0.0049 Score=61.01 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
-++|.||+|||||+++..||..++..++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~ii 32 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVI 32 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcccee
Confidence 4889999999999999999998865443
No 227
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.51 E-value=0.0064 Score=63.49 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
.+..-++|+|+||+|||+||..+|... |.++++++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344468999999999999999988754 557776654
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.49 E-value=0.0015 Score=60.88 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344688999999999999999999874
No 229
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.48 E-value=0.0017 Score=64.11 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
..++|.||+|||||+|+..||..++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 45889999999999999999999876655443
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.48 E-value=0.0018 Score=60.42 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|.|.|++||||||+++.|+. +|.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 3588999999999999999998 7776654
No 231
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.48 E-value=0.017 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|.||+|||+|+.+|...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999998653
No 232
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.48 E-value=0.0045 Score=67.35 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++++||||||||+++..+...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 59999999999999998876654
No 233
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.47 E-value=0.0041 Score=57.22 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v 306 (523)
.-.+++||+|+|||+.+-.++..+ |..+..+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 358899999999999998888776 5555544
No 234
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.47 E-value=0.0019 Score=60.28 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=26.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.+.|+|+||||||++++.|+..+|.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58999999999999999999999977654
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.46 E-value=0.0027 Score=58.98 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
+...+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344688999999999999999999874
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.46 E-value=0.002 Score=59.00 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.|+|+||||+|||+|++.|.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 499999999999999999988764
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.46 E-value=0.0018 Score=60.29 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhC----CCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~----~~~~~v~~ 308 (523)
++..++|.|+||+||||+++.|+..++ .+++.+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 344688999999999999999998764 56776654
No 238
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.46 E-value=0.0011 Score=61.49 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh-CCCee
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS-GLDYA 304 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l-~~~~~ 304 (523)
+..+.|.||||+||||+++.|+..+ +.+++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 3468899999999999999999876 44443
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0018 Score=58.79 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..+.|.||||+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998763
No 240
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.44 E-value=0.0036 Score=58.47 Aligned_cols=129 Identities=20% Similarity=0.186 Sum_probs=65.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEecC--CcccchhhHHHHHHHHHHHHHhcCCceEEEEccchhhh-hhcccc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG--DVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL-CERNSI 353 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~--~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~-~~~~~~ 353 (523)
.|-|+|..||||||+++.++. +|.|++..+.- .+...++.....+...|....-...| .+|.-. ...- .
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg------~ldR~~L~~~v-F 82 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADG------SLDRARMRALI-F 82 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTS------SBCHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCC------CCcHHHHHHHH-h
Confidence 588999999999999999998 88887654320 11122333444455555211111111 122100 0000 0
Q ss_pred cCcHHHHHHHHHH---------HHHhCCCCCCEEEEEeeCCCCCCc-HHHhccccceEeecCCCHHHHHHHHHH
Q 009856 354 HMSEAQRSALNAL---------LFRTGDQSRDIVLVLATNRPGDLD-SAITDRIDEVIEFPLPREEERFKLLKL 417 (523)
Q Consensus 354 ~~~~~~~~~l~~l---------l~~~~~~~~~v~iI~ttn~~~~l~-~al~~Rf~~~i~~~~p~~~er~~il~~ 417 (523)
.++.....|+.+ ...+.....+++|+= .|-.+. ..+...||.+|.+..|......++..+
T Consensus 83 -~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d---~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R 152 (210)
T 4i1u_A 83 -SDEDARRRLEAITHPLIRAETEREARDAQGPYVIFV---VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR 152 (210)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE---CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEE---EecccccCCccccCCeEEEEECCHHHHHHHHHhc
Confidence 011122222222 122222233443332 233455 677778999999999877766666654
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.44 E-value=0.0017 Score=59.88 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+..+.|.||||+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999999876
No 242
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.41 E-value=0.0097 Score=59.16 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.+..-++|.|+||+|||+|+..+|... |.++++++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 344569999999999999999998664 456666553
No 243
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.40 E-value=0.0061 Score=62.39 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
..|+|.||+|+|||+|+..||..++..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 458899999999999999999998765443
No 244
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.39 E-value=0.0016 Score=63.68 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
+..|.|+|+|||||||+|+.|+ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3468999999999999999999 57876654
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.38 E-value=0.0084 Score=59.38 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
++..++|+||+|+||||++..||..+ +..+..++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 44568999999999999999999876 44444444
No 246
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.33 E-value=0.0093 Score=57.47 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...|+|.|++|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 247
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.33 E-value=0.012 Score=61.04 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++..++|+|+||+||||++..||..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34679999999999999999999876 455555554
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.31 E-value=0.002 Score=64.71 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.|+|.||+|+|||++|..||..++..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 589999999999999999999988554443
No 249
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.30 E-value=0.0024 Score=58.16 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.++|.||||+||||+++.|+..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998654
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.30 E-value=0.0024 Score=58.68 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.-+.|.||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999875
No 251
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.28 E-value=0.0025 Score=59.09 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=27.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|.|.||+|||||++++.||..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999873
No 252
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.26 E-value=0.017 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...|+|.|++|+|||+|+..++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.26 E-value=0.0019 Score=59.84 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
+..+.|.||+|+||||+++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999887
No 254
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.24 E-value=0.038 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+++++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 35999999999999877655543
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0025 Score=58.90 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..+.|.||+|+||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4599999999999999999998763
No 256
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.24 E-value=0.0021 Score=63.19 Aligned_cols=29 Identities=38% Similarity=0.561 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh-CCCee
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS-GLDYA 304 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l-~~~~~ 304 (523)
..|+|.|+||+||||+++.|+..+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358999999999999999999864 54443
No 257
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.23 E-value=0.013 Score=53.83 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+++++.||+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 359999999999999998776643
No 258
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.21 E-value=0.021 Score=60.87 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCchHHHHHHH--HHHh--CCCeeEEecC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREI--ARKS--GLDYAMMTGG 309 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~al--a~~l--~~~~~~v~~~ 309 (523)
+...++|.||||+|||||++.+ +... +...+++++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4456999999999999999994 4433 3344555543
No 259
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.20 E-value=0.015 Score=66.17 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..++|+||.|+||||+.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999853
No 260
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.19 E-value=0.011 Score=67.09 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=53.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh-----CCCe----eEEe----------cCCcccch-hhHHHHHHHHHHHHHhcCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS-----GLDY----AMMT----------GGDVAPLG-AQAVTKIHEIFDWAKKSKK 334 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l-----~~~~----~~v~----------~~~~~~~~-~~~~~~l~~~f~~a~~~~~ 334 (523)
...++|+||.|+||||+.+.++... |..+ ..+. ..+....+ +.....+......+.....
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 4468999999999999999987432 3211 1111 01100000 0111222333333333456
Q ss_pred ceEEEEccchhhhhhcccccCcHHHHHHH-HHHHHHhCCCCCCEEEEEeeCCCC
Q 009856 335 GLLLFIDEADAFLCERNSIHMSEAQRSAL-NALLFRTGDQSRDIVLVLATNRPG 387 (523)
Q Consensus 335 ~~vL~iDEid~l~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~v~iI~ttn~~~ 387 (523)
+.+|+|||... +.++.....+ ..++..+... .+..+|++|...+
T Consensus 753 p~LlLLDEP~~--------GlD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~e 797 (918)
T 3thx_B 753 QSLVILDELGR--------GTSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYPP 797 (918)
T ss_dssp TCEEEEESTTT--------TSCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGG
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHH
Confidence 78999999965 2333333333 3555544211 2456778887654
No 261
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.18 E-value=0.012 Score=54.93 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
-.+++||.|+|||+.+-.++..+ |..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46689999999999998887765 66666554
No 262
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.15 E-value=0.0024 Score=66.24 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCee
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDYA 304 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~~ 304 (523)
+.-|+|+|+||+||||+|+.|+..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 456889999999999999999998875544
No 263
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.15 E-value=0.024 Score=57.44 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+-|.||+|+|||||+++|+...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34458899999999999999998765
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.11 E-value=0.0031 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998763
No 265
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.11 E-value=0.018 Score=61.27 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC---CCeeEEe
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG---LDYAMMT 307 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~ 307 (523)
..|+|+|.||+||||+++.|+..++ .+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4589999999999999999999984 4444444
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.06 E-value=0.0029 Score=58.42 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..++|.||||+|||++|..|+...+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999998765
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.05 E-value=0.004 Score=57.54 Aligned_cols=26 Identities=12% Similarity=0.443 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+.+.|.||+|+|||+|++.|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999998764
No 268
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.01 E-value=0.0059 Score=66.19 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.+..|+|.|+||+||||+|+.|+..+ |.+++.+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 34568999999999999999999999 999888764
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.99 E-value=0.0083 Score=58.96 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
++..|.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999875
No 270
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.95 E-value=0.028 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|.|.|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 271
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.94 E-value=0.028 Score=53.01 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.1
Q ss_pred ceEEEEcCCCCchHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala 296 (523)
..+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 359999999999998766553
No 272
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.93 E-value=0.014 Score=54.39 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.8
Q ss_pred ceEEEEcCCCCchHHHH
Q 009856 276 RNMLFYGPPGTGKTMVA 292 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA 292 (523)
+++++.+|+|+|||..+
T Consensus 52 ~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 45999999999999873
No 273
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.92 E-value=0.03 Score=54.07 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHH
Q 009856 252 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+.....+..+....... +.+...|++.|++|+|||+|+.++...
T Consensus 19 ~~~~~~l~~~~~~~~~~---~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 19 PATQTKLLELLGNLKQE---DVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHHHHHHT---TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhc---CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34455555554443321 223346999999999999999999754
No 274
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.91 E-value=0.028 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 275
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.90 E-value=0.014 Score=55.15 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...|+|.|++|+|||+|+.+|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 346999999999999999999764
No 276
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.87 E-value=0.024 Score=63.37 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+...++|+||+|+||||+.+.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3446899999999999999999865
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.85 E-value=0.014 Score=63.85 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 250 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 250 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+.+...+++..++. ..+ -.||.||||||||+++-.+...+
T Consensus 190 LN~~Q~~AV~~al~--------~~~--~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 190 LDTSQKEAVLFALS--------QKE--LAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CCHHHHHHHHHHHH--------CSS--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc--------CCC--ceEEECCCCCCHHHHHHHHHHHH
Confidence 45666666655432 111 37999999999998766554443
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.84 E-value=0.005 Score=57.73 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33458999999999999999999876
No 279
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.83 E-value=0.03 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~ 297 (523)
..+-.++.|+||||||+++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 344578999999999999988765
No 280
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.82 E-value=0.0051 Score=55.91 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=27.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHhCCCeeEEecCC
Q 009856 278 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 310 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l~~~~~~v~~~~ 310 (523)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 88877776543
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.82 E-value=0.055 Score=54.56 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
...|.|+|+||+|||+++..|+..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999999998876 55544443
No 282
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.82 E-value=0.0062 Score=57.64 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.+-|.||||+||||+|+.|+..+|.+++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 377899999999999999999999887643
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.80 E-value=0.036 Score=58.60 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++..|+|+|+||+||||++..||..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999776 666666655
No 284
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.76 E-value=0.026 Score=60.16 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
+...++|.||||+|||+|++.++... |.+.+++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 33468999999999999999998765 44444444
No 285
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.74 E-value=0.073 Score=52.29 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=30.2
Q ss_pred ccccCCCcccCHHHHHHHHHHH-------HHHhcchhcCCCCceEEEEcCCCCchHHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLA-------KATANTKIHQAPFRNMLFYGPPGTGKTMVA 292 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~-------~~~~~~~~~~~p~~~vLL~GppGtGKT~lA 292 (523)
...+|+++-..+.+.+.+...- ....-+.....+++++++++|+|||||...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3456677766777666664310 000001111223467999999999999864
No 286
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.73 E-value=0.037 Score=52.20 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
-.++|||.|+|||+.+-..+... |..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47789999999997776665544 45555443
No 287
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.72 E-value=0.022 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
..|+|.|.||+||||+++.|+..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46999999999999999999998753
No 288
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.72 E-value=0.0061 Score=57.30 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
++..-+.|.||+|+|||||++.|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445688999999999999999998764
No 289
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.71 E-value=0.078 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999887764
No 290
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.69 E-value=0.05 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|+||+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999764
No 291
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.68 E-value=0.041 Score=57.37 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.+..-++|.|+||+|||+||..+|... |.++.+++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 344469999999999999999988765 566666654
No 292
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.68 E-value=0.0061 Score=57.49 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeE
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAM 305 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~ 305 (523)
.|.|.|++|||||++++.||..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999998863
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.65 E-value=0.0055 Score=55.05 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCchHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREI 295 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~al 295 (523)
.-+.|.||+|+||||+++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45889999999999999953
No 294
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.65 E-value=0.0058 Score=58.26 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
.-+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 358899999999999999999988754
No 295
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.61 E-value=0.0072 Score=55.96 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
...+.|.||+|+||||+++.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998874
No 296
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.61 E-value=0.028 Score=51.44 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 359999999999998743
No 297
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.61 E-value=0.0075 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||.|+|||||++.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33458899999999999999999987
No 298
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.60 E-value=0.003 Score=58.46 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
-|.|.|+||+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 299
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.58 E-value=0.0079 Score=56.88 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.-|.|.||||+||||+++.|+..++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999986
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.54 E-value=0.0093 Score=58.97 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 272 QAPFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 272 ~~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++...+.|+||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4455679999999999999999999987
No 301
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.082 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.|+|.|++|+|||+|+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 302
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.52 E-value=0.044 Score=58.00 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
+..-++|.|+||+|||+++..+|... |.++++++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 34468999999999999999998765 456666654
No 303
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.52 E-value=0.038 Score=61.52 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..++|+||+|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35889999999999999999864
No 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.51 E-value=0.0061 Score=59.93 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC---CCeeEEecCCcc
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVA 312 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~~~~~~ 312 (523)
-|.|.||+|+||||+++.|+..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 488999999999999999999775 445556555544
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.49 E-value=0.045 Score=56.80 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEecCC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGD 310 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~~~ 310 (523)
.+++.++|+|++|+||||++-.||..+ |..+..+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345678999999999999999998776 66677666643
No 306
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.47 E-value=0.15 Score=45.74 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...|+|.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999753
No 307
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.47 E-value=0.036 Score=56.29 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...++|.||||||||++++.|++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34469999999999999999998865
No 308
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.47 E-value=0.013 Score=57.27 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh----CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l----~~~~~~v~~ 308 (523)
.+..-++|.||||+|||+|++.++..+ |.++++++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344468999999999999999998775 445555543
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.46 E-value=0.016 Score=57.55 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3445688999999999999999998773
No 310
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.44 E-value=0.027 Score=51.52 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 459999999999997654
No 311
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.40 E-value=0.043 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 312
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.36 E-value=0.1 Score=56.33 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+||||+++.++..+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455579999999999999999998865
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.36 E-value=0.018 Score=51.68 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
+.+.|.|++|+||||++..|+..+ |..+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 358899999999999999999876 455555543
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.35 E-value=0.022 Score=56.65 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
+.-+.|.||+||||||+++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34688999999999999999999875
No 315
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.34 E-value=0.039 Score=52.57 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 469999999999998754
No 316
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.32 E-value=0.029 Score=53.07 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 359999999999998754
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.32 E-value=0.0064 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=15.9
Q ss_pred CceEEEEcCCCCchHHHHHHHH-HHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIA-RKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala-~~l 299 (523)
..-+.|.||+|+||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 765
No 318
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.31 E-value=0.031 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.30 E-value=0.011 Score=58.35 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
++..+.|.||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999999999999876
No 320
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.28 E-value=0.024 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
++..+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999999876
No 321
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.28 E-value=0.057 Score=62.03 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCchHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala 296 (523)
...++|+||.|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999984
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.25 E-value=0.024 Score=58.61 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=34.0
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHhcchhcCCCCceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 243 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 243 ~~~~~vig~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..++++-..+.....+..++ ..+...++|.||+|+||||+.++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~---------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI---------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH---------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHH---------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34566655555555554441 12233589999999999999999999884
No 323
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.23 E-value=0.024 Score=56.68 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++..+.|.||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999999876
No 324
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.23 E-value=0.099 Score=52.50 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCchHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREI 295 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~al 295 (523)
.+++++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 357999999999999876543
No 325
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.22 E-value=0.024 Score=53.55 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 459999999999998743
No 326
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.21 E-value=0.045 Score=54.05 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+|++-|.|.|+||+|||+|..++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456889999999999999999753
No 327
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.20 E-value=0.032 Score=57.91 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCchHHHH
Q 009856 276 RNMLFYGPPGTGKTMVA 292 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA 292 (523)
+++|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46999999999999986
No 328
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.19 E-value=0.046 Score=53.78 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
+..+++.|++|+||||++..+|..+ |..+..+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4468889999999999999999876 556655554
No 329
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.18 E-value=0.047 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+...|+|.|+||+|||+|...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 330
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.17 E-value=0.064 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 331
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.14 E-value=0.013 Score=63.17 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC----CCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~----~~~~~v~~ 308 (523)
..|+|.|+||+||||+|+.|++.++ .+++.+++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4689999999999999999999986 77777764
No 332
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.12 E-value=0.064 Score=58.25 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+.+.|.||+|+|||||.++|+...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 349999999999999999998753
No 333
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.11 E-value=0.13 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
+++++.+|+|+|||..+-..+-
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999987654443
No 334
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.11 E-value=0.13 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999764
No 335
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.09 E-value=0.07 Score=57.79 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+||||+++.++..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 455679999999999999999998765
No 336
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.07 E-value=0.045 Score=51.02 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999998654
No 337
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.05 E-value=0.012 Score=52.99 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
..++||.|+||+|||++|..+... |+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 357999999999999999999874 443
No 338
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.04 E-value=0.012 Score=59.83 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...++|+||+|+||||++++++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44569999999999999999999876
No 339
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.04 E-value=0.031 Score=52.18 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh---CCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v 306 (523)
.-|.|.|++|+||||+++.|+..+ |.+++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 347889999999999999999987 4555444
No 340
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.03 E-value=0.03 Score=56.66 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
++..+.|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44568899999999999999999876
No 341
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.99 E-value=0.071 Score=49.96 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 359999999999998644
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.98 E-value=0.013 Score=58.10 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
+..+.|.||+|+||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999875
No 343
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.97 E-value=0.079 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 36999999999999987655443
No 344
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.95 E-value=0.032 Score=55.56 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.++..++|+||+|+||||++..||..+ |..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345678999999999999999999876 455554443
No 345
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.94 E-value=0.041 Score=51.47 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~~~~v 306 (523)
.-|.|.|++|+||||+++.|+..++.+...+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 3588999999999999999999998754433
No 346
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.94 E-value=0.081 Score=49.47 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCchHHHH
Q 009856 276 RNMLFYGPPGTGKTMVA 292 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA 292 (523)
+++++.+|+|+|||..+
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999874
No 347
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.92 E-value=0.035 Score=52.36 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh-------CCCeeEE
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS-------GLDYAMM 306 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l-------~~~~~~v 306 (523)
.-|.|.||+|+||||+++.|+..+ |.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 348889999999999999999987 5565544
No 348
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.91 E-value=0.016 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
-.+|+||+|+|||+++++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
No 349
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.83 E-value=0.11 Score=52.26 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~ 297 (523)
.|.|.|++|+|||+|..+|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 699999999999999999987
No 350
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.80 E-value=0.15 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...|+|.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999764
No 351
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.74 E-value=0.02 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|+||||++..|+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458999999999999999998875
No 352
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.73 E-value=0.14 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 353
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.71 E-value=0.016 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||.+.|+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44468899999999999999998765
No 354
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.71 E-value=0.1 Score=52.83 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCchHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala 296 (523)
+++++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 359999999999998765443
No 355
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.69 E-value=0.17 Score=47.62 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 359999999999998643
No 356
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.68 E-value=0.0078 Score=58.00 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
+.-|.|.|++|+||||+++.|+..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999983
No 357
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.56 E-value=0.018 Score=54.78 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||++.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344468899999999999999998765
No 358
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=94.55 E-value=4.6 Score=44.30 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHH-HHhhhhHHh
Q 009856 42 EDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMA-EAEGRAHEA 120 (523)
Q Consensus 42 ~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-e~~~~~~~~ 120 (523)
+-+|+|+++.++.++. +.+.+++++|-++.+.+. ..+...++...-+...++-++.++....+.++.. +..+.++..
T Consensus 685 ~g~Lerqki~d~a~aE-~~r~~Llel~a~s~aves-~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~~ael~~~ 762 (861)
T 2zuo_A 685 RGRLERQKILDQSEAE-KARKELLELEAMSMAVES-TGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERV 762 (861)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhHhhh-cchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhhhHHHHHHH
Confidence 5679999999997774 467788888888865443 3344555555555666777777666665554444 555555555
Q ss_pred hhhhhhhHHHHH
Q 009856 121 KLTEDHNRRMLI 132 (523)
Q Consensus 121 ~~~~d~~~~~~~ 132 (523)
+...+..+...+
T Consensus 763 ~~~~~~el~~~~ 774 (861)
T 2zuo_A 763 KKVREMELIYAR 774 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 554444444443
No 359
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.55 E-value=0.16 Score=46.86 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCchHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVARE 294 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~a 294 (523)
+++++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 3599999999999987443
No 360
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.51 E-value=0.11 Score=61.52 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
++...+.|+||+|+||||+++.|...+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 455679999999999999999998876
No 361
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.50 E-value=0.16 Score=51.50 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCchHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVARE 294 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~a 294 (523)
+++++.+|+|+|||..+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 3599999999999987543
No 362
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.49 E-value=0.075 Score=55.51 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..|+|.|.||+|||+|...|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3699999999999999999864
No 363
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.49 E-value=0.08 Score=59.16 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=31.8
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHhcch-----hcCCCCceEEEEcCCCCchHHHHHHHHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLAKATANTK-----IHQAPFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~~~~~~~~-----~~~~p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
+..+|.++-..+...+.+...-..-.... ........+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34567777666666655543210000000 00001235999999999999977666443
No 364
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.48 E-value=0.085 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999753
No 365
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.48 E-value=0.02 Score=54.29 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..|.|.|++|+||||+++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999984
No 366
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.16 Score=51.02 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...++|.|+||+|||+|+..++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999764
No 367
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.47 E-value=0.017 Score=54.40 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.|.||+|+|||||++.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998765
No 368
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.44 E-value=0.017 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.+.|.||+|+|||||++.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.43 E-value=0.054 Score=51.37 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.-|.|.|++|+||||+++.|+..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999887
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.42 E-value=0.022 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|+|||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999865
No 371
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.42 E-value=0.082 Score=50.72 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.7
Q ss_pred ceEEEEcCCCCchHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVARE 294 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~a 294 (523)
+++++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 3599999999999987543
No 372
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.41 E-value=0.026 Score=59.69 Aligned_cols=26 Identities=0% Similarity=-0.092 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
..|+|.|.|||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999999975
No 373
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.40 E-value=0.095 Score=49.67 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 359999999999998643
No 374
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.39 E-value=0.026 Score=59.95 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCC--CeeEEecC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGG 309 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~--~~~~v~~~ 309 (523)
.+++|.||+|+||||++++++..+.. ..+.+.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 35999999999999999999988742 34444443
No 375
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.39 E-value=0.11 Score=47.75 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...|+|.|++|+|||+|+.++...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347999999999999999999764
No 376
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.34 E-value=0.022 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
++.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.014 Score=52.62 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhC
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
.+.|.||+|+||||+++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998873
No 378
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.25 E-value=0.14 Score=54.64 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|+|||||+++|+..+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999865
No 379
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.24 E-value=0.022 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998765
No 380
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.23 E-value=0.11 Score=53.22 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.2
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala 296 (523)
++++.+|+|+|||.++-..+
T Consensus 38 ~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHH
Confidence 59999999999999554443
No 381
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.23 E-value=0.019 Score=58.28 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..++|.||+|+||||++++|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3599999999999999999998764
No 382
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.22 E-value=0.026 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 383
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.20 E-value=0.28 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999764
No 384
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.20 E-value=0.022 Score=54.33 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344468899999999999999998765
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.19 E-value=0.022 Score=53.23 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|+|||||.+.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 386
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.14 E-value=0.025 Score=61.65 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++|.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999988776654
No 387
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.12 E-value=0.044 Score=54.92 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
.|..-++|.|+||+|||+|+..+|... |.++.+++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344469999999999999999998764 667666654
No 388
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.12 E-value=0.022 Score=61.09 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..+.|.|++||||||++++|+..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4688999999999999999999884
No 389
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.11 E-value=0.029 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHH
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
.+...+.|.||+|+|||||++.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34446889999999999999999985
No 390
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.11 E-value=0.36 Score=48.77 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
.+.+.|.|+||+|||+|.++++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 345889999999999999999754
No 391
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.11 E-value=0.025 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 392
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.10 E-value=0.025 Score=54.52 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||++.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568999999999999999998765
No 393
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.09 E-value=0.029 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...+.|.||+|+|||||++.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999985
No 394
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.09 E-value=0.029 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 395
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.07 E-value=0.094 Score=58.06 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
.+++++||+|+|||+.+-
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 469999999999999883
No 396
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.04 E-value=0.026 Score=54.76 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||++.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344468899999999999999998765
No 397
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.02 E-value=0.026 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458899999999999999998765
No 398
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.02 E-value=0.12 Score=61.33 Aligned_cols=26 Identities=31% Similarity=0.522 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
|...+-|+||+|+||||+++.|.+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 33458899999999999999998865
No 399
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.02 E-value=0.026 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.|.||+|+|||||.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998765
No 400
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.00 E-value=0.027 Score=54.43 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44468899999999999999998765
No 401
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.99 E-value=0.029 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..-+.|.||+|||||||.+.|+...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999865
No 402
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.99 E-value=0.031 Score=58.67 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
++..++|.||+|+||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568899999999999999999876
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.99 E-value=0.026 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||.+.|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999999875
No 404
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.95 E-value=0.23 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|.|.|.||+|||+|..++...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999754
No 405
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.94 E-value=0.027 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.|.||+|+|||||.+.|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998765
No 406
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.93 E-value=0.027 Score=54.81 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.|.||+|+|||||++.|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998765
No 407
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.92 E-value=0.026 Score=57.18 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhCCC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSGLD 302 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~~~ 302 (523)
..+.|.||+|+|||||++.|+..+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999987543
No 408
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.92 E-value=0.029 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||.+.|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468899999999999999998765
No 409
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.90 E-value=0.031 Score=48.41 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 410
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.88 E-value=0.03 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 411
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.85 E-value=0.04 Score=51.86 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCC
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
+.-|.|.|++|+||||+++.|+..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345888999999999999999987644
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.85 E-value=0.029 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||.+.|+..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33458899999999999999998765
No 413
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.84 E-value=0.03 Score=54.14 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999998765
No 414
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.84 E-value=0.035 Score=48.45 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999764
No 415
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.81 E-value=0.029 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33458899999999999999998765
No 416
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.79 E-value=0.032 Score=49.12 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~ 297 (523)
.+.|.|+||+|||+|.+.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 417
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.79 E-value=0.15 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
....+.|.|+||+||||++..|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998765
No 418
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.77 E-value=0.027 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~ 297 (523)
.++|.|+||+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 419
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.77 E-value=0.087 Score=54.92 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCeeEEe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 307 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~~~v~ 307 (523)
+++|+||+|+|||.++-.++..++.+.+.+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~ 140 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 4999999999999999888887766655553
No 420
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.75 E-value=0.036 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|||||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33458899999999999999999865
No 421
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.75 E-value=0.037 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.|+|.|++|+|||+|+..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998653
No 422
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.74 E-value=0.054 Score=59.81 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
.++++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 469999999999999884
No 423
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.036 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...+.|.||+|||||||.+.|+...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999865
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.74 E-value=0.037 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.72 E-value=0.037 Score=56.36 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+..-+.|.||+|||||||.+.|+...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33458899999999999999999865
No 426
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.71 E-value=0.035 Score=48.83 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|+||+|||+|+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999998653
No 427
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.69 E-value=0.3 Score=45.45 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHH-HHHHHHHHh--CCCeeEE
Q 009856 277 NMLFYGPPGTGKTM-VAREIARKS--GLDYAMM 306 (523)
Q Consensus 277 ~vLL~GppGtGKT~-lA~ala~~l--~~~~~~v 306 (523)
-.+++||.|+|||+ +.+.+.+.. +..++.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 47889999999999 555543333 4555444
No 428
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.68 E-value=0.036 Score=55.89 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|||||||.+.|+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999999765
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.66 E-value=0.071 Score=50.75 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh--CCCeeEEec
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS--GLDYAMMTG 308 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l--~~~~~~v~~ 308 (523)
...+++.|.+|+||||++..++..+ |..+..+++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3468899999999999999999776 555655553
No 430
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.65 E-value=0.039 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999764
No 431
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.65 E-value=0.036 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999754
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.65 E-value=0.034 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..+.|.|+||+|||+|...++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999864
No 433
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.64 E-value=0.032 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33458899999999999999998765
No 434
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.64 E-value=0.077 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG 300 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~ 300 (523)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998764
No 435
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.62 E-value=0.039 Score=56.05 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|||||||.+.|+...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33458899999999999999999865
No 436
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.62 E-value=0.033 Score=53.49 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999998865
No 437
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.62 E-value=0.04 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.58 E-value=0.047 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
-.+|+||.|+|||++..+|+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.53 E-value=0.048 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~ 297 (523)
...|+|.|++|+|||+|+..+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999975
No 440
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.058 Score=56.46 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|+|||||++.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34459999999999999999998865
No 441
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.53 E-value=0.043 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+.++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 442
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.51 E-value=0.055 Score=49.93 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHhCC
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKSGL 301 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l~~ 301 (523)
.|..-|+|+|.||+||+++|..+...+|.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 46667999999999999999999887754
No 443
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.50 E-value=0.043 Score=47.82 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 444
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.47 E-value=0.041 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~ 297 (523)
.|+|.|+||+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.041 Score=48.07 Aligned_cols=21 Identities=19% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~ 297 (523)
.|++.|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999999976
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.46 E-value=0.041 Score=51.77 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCe
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDY 303 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~ 303 (523)
+.-+.|.||.|+||||+++.|+.. +..+
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 345889999999999999999987 4443
No 447
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.45 E-value=0.042 Score=55.87 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|||||||.+.|+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 458899999999999999999865
No 448
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.43 E-value=0.049 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 449
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.42 E-value=0.032 Score=56.17 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|||||||.+.|+...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33458899999999999999999865
No 450
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.42 E-value=0.043 Score=47.86 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~ 297 (523)
.|+|.|+||+|||+|+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 599999999999999999853
No 451
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.40 E-value=0.045 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 452
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.38 E-value=0.059 Score=57.69 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhC---CCeeEEec
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTG 308 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l~---~~~~~v~~ 308 (523)
..|+|+|+||+||||+++.|+..++ .++..+++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 4588999999999999999998774 45655553
No 453
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.36 E-value=0.14 Score=56.56 Aligned_cols=19 Identities=37% Similarity=0.749 Sum_probs=16.6
Q ss_pred ceEEEEcCCCCchHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVARE 294 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~a 294 (523)
.++++.||+|+|||+.+-.
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 4699999999999999843
No 454
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.35 E-value=0.078 Score=52.03 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++..+.|+|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34568889999999999999999876 445544443
No 455
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.35 E-value=0.56 Score=51.16 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCchHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREI 295 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~al 295 (523)
..+++.||+|+|||+.+-..
T Consensus 233 ~~vlv~ApTGSGKT~a~~l~ 252 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVPAA 252 (666)
T ss_dssp EEEEEECCTTSCTTTHHHHH
T ss_pred CeEEEEeCCchhHHHHHHHH
Confidence 46899999999999765443
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.33 E-value=0.044 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
-|.|.|++|+||||.++.|+..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999987
No 457
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.32 E-value=0.068 Score=55.07 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.5
Q ss_pred ccCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 009856 449 KDLSDNVIQEAARKTEGFSGREIAKLMASV 478 (523)
Q Consensus 449 ~~~~~~~l~~la~~t~G~sgrdI~~L~~~~ 478 (523)
-.++++.+..+|..+ |.+..+++.++.+.
T Consensus 320 FGld~~sl~~~a~~~-~~~~~~~~~~~~s~ 348 (413)
T 1tq4_A 320 FGVDETSLQRLARDW-EIEVDQVEAMIKSP 348 (413)
T ss_dssp TTCSHHHHHHHHSSS-SSCHHHHHHTCSHH
T ss_pred cCCCHHHHHHHHHHh-CCCHHHHHHHHhCh
Confidence 478999999999765 78998888887654
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.31 E-value=0.075 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..|+++.||+|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999998764
No 459
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.27 E-value=0.044 Score=61.42 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 009856 277 NMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l 299 (523)
.++|.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999988776654
No 460
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.26 E-value=0.35 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCchHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~ 297 (523)
...|.+.|.||+|||+|..+|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999999864
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.25 E-value=0.052 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...++|.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999876
No 462
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.14 Score=59.53 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
.++|++||+|+|||.++-..+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHH
Confidence 4599999999999998754443
No 463
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.24 E-value=0.05 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..|+|.|++|+|||+|+..+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 464
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.23 E-value=0.047 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..++|.|++|+|||+|+..++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999863
No 465
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.21 E-value=0.047 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999853
No 466
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.20 E-value=0.036 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..+.|.||+|+|||||.+.|+..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999765
No 467
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.19 E-value=0.05 Score=48.47 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999864
No 468
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.17 E-value=0.12 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
...|.|.|+||+|||||..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999764
No 469
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.15 E-value=0.052 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.14 E-value=0.042 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||.+.|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344468899999999999999998765
No 471
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.14 E-value=0.049 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
-.|+|.|+||+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999753
No 472
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.14 E-value=0.048 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+..-+.|.||+|||||||.+.|+...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344468999999999999999999754
No 473
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.11 E-value=0.14 Score=46.94 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHh---CCCeeEEe
Q 009856 278 MLFYGPPGTGKTMVAREIARKS---GLDYAMMT 307 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l---~~~~~~v~ 307 (523)
|.|-|+.||||||.++.|++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6788999999999999999887 67766554
No 474
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.11 E-value=0.081 Score=54.66 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh---CCCeeEEec
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 308 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l---~~~~~~v~~ 308 (523)
++..++|.||+|+||||++..||..+ |..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 44568889999999999999999877 445555444
No 475
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.10 E-value=0.049 Score=48.08 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 476
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.09 E-value=0.053 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999865
No 477
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.09 E-value=0.09 Score=50.00 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhCCCe
Q 009856 277 NMLFYGPPGTGKTMVAREIARKSGLDY 303 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~l~~~~ 303 (523)
-+.|+|++|||||++++.+...+|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 378999999999999999998888664
No 478
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.09 E-value=0.048 Score=48.18 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..|+|.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 479
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.06 E-value=0.051 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.03 E-value=0.06 Score=53.23 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhCCCe
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARKSGLDY 303 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~l~~~~ 303 (523)
..+++|.|+||+|||++|..+... |+.+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 357999999999999999999875 4443
No 481
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.02 E-value=0.056 Score=47.87 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 482
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.01 E-value=0.056 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 483
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.99 E-value=0.077 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||||+|||||.++|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34458899999999999999999765
No 484
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.98 E-value=0.57 Score=49.82 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCchHHHH
Q 009856 276 RNMLFYGPPGTGKTMVA 292 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA 292 (523)
+++++.+|+|+|||..+
T Consensus 112 ~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAF 128 (563)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCccHHH
Confidence 46999999999999854
No 485
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.98 E-value=0.06 Score=48.41 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 486
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.97 E-value=0.053 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 487
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.95 E-value=0.034 Score=56.15 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
+...+.|.||+|||||||.+.|+...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33458899999999999999999765
No 488
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.93 E-value=0.057 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHH
Q 009856 275 FRNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 275 ~~~vLL~GppGtGKT~lA~ala~~ 298 (523)
...|+|.|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.92 E-value=0.13 Score=47.48 Aligned_cols=29 Identities=38% Similarity=0.623 Sum_probs=24.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHh--CCCeeEE
Q 009856 278 MLFYGPPGTGKTMVAREIARKS--GLDYAMM 306 (523)
Q Consensus 278 vLL~GppGtGKT~lA~ala~~l--~~~~~~v 306 (523)
|.|-|+.|+||||.++.|+..+ |.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 7788999999999999999988 4455444
No 490
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.91 E-value=0.06 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~ 298 (523)
..|+|.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 491
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.90 E-value=0.057 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchHHHHHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAREIAR 297 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~ 297 (523)
..|+|.|+||+|||+|+..+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999986
No 492
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.87 E-value=0.061 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999754
No 493
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.85 E-value=0.051 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999764
No 494
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.80 E-value=0.073 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.2
Q ss_pred CCceEEEEcCCCCchHHHHHHHH
Q 009856 274 PFRNMLFYGPPGTGKTMVAREIA 296 (523)
Q Consensus 274 p~~~vLL~GppGtGKT~lA~ala 296 (523)
+...|+|.|++|+|||+|+..+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999886
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.79 E-value=0.039 Score=54.50 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCchHHHHHHHHHHh
Q 009856 273 APFRNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 273 ~p~~~vLL~GppGtGKT~lA~ala~~l 299 (523)
.+...+.|.||+|+|||||++.|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 455569999999999999999998865
No 496
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.78 E-value=0.68 Score=47.68 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=28.3
Q ss_pred ccccCCCcccCHHHHHHHHHHH-------H-HHhcchhcCCCCceEEEEcCCCCchHHHH
Q 009856 241 AIKNNGDIILHPSLQRRIQHLA-------K-ATANTKIHQAPFRNMLFYGPPGTGKTMVA 292 (523)
Q Consensus 241 ~~~~~~~vig~~~~~~~l~~~~-------~-~~~~~~~~~~p~~~vLL~GppGtGKT~lA 292 (523)
+..+|+++-..+.+.+.+...- . .....- ...+++++.+|+|+|||...
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i---~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVI---SSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH---HTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH---hcCCCEEEECCCCCCchHHH
Confidence 4556777666666666654310 0 000000 01246999999999999853
No 497
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.74 E-value=0.92 Score=47.76 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
++++.+|+|+|||..+-..+..
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHH
Confidence 5999999999999987666544
No 498
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.73 E-value=0.064 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 009856 277 NMLFYGPPGTGKTMVAREIARK 298 (523)
Q Consensus 277 ~vLL~GppGtGKT~lA~ala~~ 298 (523)
.|+|.|++|+|||+|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 499
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.66 E-value=0.066 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHh
Q 009856 276 RNMLFYGPPGTGKTMVAREIARKS 299 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ala~~l 299 (523)
..|+|.|+||+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999998887654
No 500
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.64 E-value=0.64 Score=49.82 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCchHHHHH
Q 009856 276 RNMLFYGPPGTGKTMVAR 293 (523)
Q Consensus 276 ~~vLL~GppGtGKT~lA~ 293 (523)
+.+++.+|+|+|||..+-
T Consensus 61 ~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 61 HDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCcHHHHHHH
Confidence 469999999999998543
Done!