BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009857
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21)
Length = 191
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 7 FFNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIV 66
GFK + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+
Sbjct: 3 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 62
Query: 67 REENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQV 125
RE+ ++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 63 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 122
Query: 126 QMLFASKYGREFVAAATELMPDCGVNRQLIELLSVRAP 163
+KY +E+ VN +L+ LSV AP
Sbjct: 123 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAP 159
>pdb|3FRS|A Chain A, Structure Of Human Ist1(Ntd) (Residues 1-189)(P43212)
Length = 189
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 11 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREEN 70
GFK + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+RE+
Sbjct: 5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDY 64
Query: 71 MMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQVQMLF 129
++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 65 LVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQL 124
Query: 130 ASKYGREFVAAATELMPDCGVNRQLIELLSVRAP 163
+KY +E+ VN +L+ LSV AP
Sbjct: 125 CAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAP 157
>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGY|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGZ|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|C Chain C, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|D Chain D, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
Length = 193
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 16 KCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQ 75
K KT LK+ I R++ + +++ KQ RR +A+LL T +E A RVE ++ ++ +
Sbjct: 11 KLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELL 70
Query: 76 EILELYCELIVVRLPI---IETQRECPLD-----LKEAISSVCFAAPRCADLPELLQVQM 127
EILELYCEL++ R+ + I T+ + + + EAI S+ +A ++ EL Q++
Sbjct: 71 EILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKD 130
Query: 128 LFASKYGREFV 138
L A K EFV
Sbjct: 131 LMAWKINVEFV 141
>pdb|2QUQ|A Chain A, Crystal Structure Of The Essential Inner Kinetochore
Protein Cep3p
Length = 562
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 266 TSPRMPAASHPAVQELSQHAETTENLPHLE 295
+ PR P A H V L QHA ++LP+++
Sbjct: 258 SGPRKPIALHTEVSSLLQHAAYLQDLPNVD 287
>pdb|1VGZ|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGZ|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
Length = 241
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 21 LKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEA 56
++ A P++++ +N + + + +R +AKLLETG A
Sbjct: 67 VQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAA 102
>pdb|2VEQ|A Chain A, Insights Into Kinetochore-Dna Interactions From The
Structure Of Cep3p
Length = 565
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 266 TSPRMPAASHPAVQELSQHAETTENLPHLE 295
+ PR P A H V L QHA ++LP+++
Sbjct: 261 SGPRKPIALHTEVSSLLQHAAYLQDLPNVD 290
>pdb|1VGW|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|C Chain C, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|D Chain D, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|E Chain E, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|F Chain F, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
Length = 231
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 24 AIPRIKLLRNRREIQIKQMRRDIAKLLETGQEA 56
A P++++ +N + + + +R +AKLLETG A
Sbjct: 70 AFPQVRVWKNGGQTRAETVRNGVAKLLETGLAA 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,407,455
Number of Sequences: 62578
Number of extensions: 491869
Number of successful extensions: 675
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 11
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)