BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009857
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3
SV=1
Length = 369
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 8 FNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVR 67
F + K K LKLA+ RI++L+N++ ++ +R++A+LL E +ARIRVE I+R
Sbjct: 4 FGPSYDSYKLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIR 63
Query: 68 EENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLPELLQVQM 127
+E ++ +I+E+ CEL+ R+ +I E PL++KE+I ++ +++ R +PEL Q++
Sbjct: 64 DEYLIECFQIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQR-IQIPELEQIKN 122
Query: 128 LFASKYGREFVAAATELMPDCG--VNRQLIELLSVRAPSADKKLKLLKEIAEEHELDW 183
+KYG+ E C VN +++ LS P + L EIAE+ +DW
Sbjct: 123 QLKAKYGK---GLENEANCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEKFNVDW 177
>sp|P53990|IST1_HUMAN IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1
Length = 364
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 7 FFNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIV 66
GFK + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQV 125
RE+ ++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 QMLFASKYGREFVAAATELMPDCGVNRQLIELLSVRAPSADKKLKLLKEIAEEHELDWDP 185
+KY +E+ VN +L+ LSV AP + L EIA+ + + ++P
Sbjct: 121 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 179
>sp|Q568Z6|IST1_RAT IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1
Length = 366
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 7 FFNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIV 66
GFK + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQV 125
RE+ ++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 QMLFASKYGREFVAAATELMPDCGVNRQLIELLSVRAPSADKKLKLLKEIAEEHELDWDP 185
+KY +E+ VN +L+ LSV AP + L EIA+ + + ++P
Sbjct: 121 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 179
>sp|Q9CX00|IST1_MOUSE IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1
Length = 362
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 7 FFNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIV 66
GFK + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQV 125
RE+ ++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 QMLFASKYGREFVAAATELMPDCGVNRQLIELLSVRAPSADKKLKLLKEIAEEHELDWDP 185
+KY +E+ VN +L+ LSV AP + L EIA+ + + ++P
Sbjct: 121 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 179
>sp|Q3ZBV1|IST1_BOVIN IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1
Length = 364
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 2/180 (1%)
Query: 7 FFNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIV 66
G K + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+
Sbjct: 1 MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQV 125
RE+ ++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 QMLFASKYGREFVAAATELMPDCGVNRQLIELLSVRAPSADKKLKLLKEIAEEHELDWDP 185
+KY +E+ VN +L+ LSV AP + L EIA+ + + ++P
Sbjct: 121 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 179
>sp|Q5R6G8|IST1_PONAB IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1
Length = 364
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 2/180 (1%)
Query: 7 FFNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIV 66
GFK + + L+L I R+KLL ++ ++ R++IA L G++ ARIRVEHI+
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRC-ADLPELLQV 125
RE+ ++ A EILELYC+L++ R +I++ +E L E++S++ +AAPR +++ EL V
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 QMLFASKYGREFVAAATELMPDCGVNRQLIELLSVRAPSADKKLKLLKEIAEEHELDWDP 185
+KY + + VN +L+ LSV AP + L EIA+ + + ++P
Sbjct: 121 ADQLCAKYSKGY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 179
>sp|P53843|IST1_YEAST Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1
SV=1
Length = 298
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 16 KCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQ 75
K KT LK+ I R++ + +++ KQ RR +A+LL T +E A RVE ++ ++ +
Sbjct: 11 KLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELL 70
Query: 76 EILELYCELIVVRLPIIE---TQRECPLD-----LKEAISSVCFAAPRCADLPELLQVQM 127
EILELYCEL++ R+ +I T+ + + + EAI S+ +A ++ EL Q++
Sbjct: 71 EILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKD 130
Query: 128 LFASKYGREFVAAATELMPDCGVNRQLIELLSVRAPSADKKLKLLKEIAEEHELDW 183
L A K EFV + V ++I+ S P + LKEIA+ +++ +
Sbjct: 131 LMAWKINVEFVNGV--IADHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY 184
>sp|O74490|IST1_SCHPO Vacuolar protein sorting-associated protein ist1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ist1 PE=3 SV=1
Length = 271
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 15 SKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAA 74
S+ + LKLA RI++LR + E KQ RR++A L++ A A+ R+E ++ ++ +
Sbjct: 2 SRLQIQLKLAASRIEILRQKEEALAKQARRNVALGLKSYSPALAKARIEPLIMQDIYIEL 61
Query: 75 QEILELYCELIVVRLPIIETQR-ECPLDLKEAISSVCFAAPRCADLPELLQVQMLFASKY 133
E+L++ E++ R ++E + + K ++ V AAP+ + EL V Y
Sbjct: 62 LELLQVDVEILANRCVVLEKRAFNDSMSFKSSLYHVMAAAPQL-QIKELRFVHDFLVKLY 120
Query: 134 GREFVAAATELMPDCGVN 151
G+EF + PD N
Sbjct: 121 GKEFARLSD---PDLATN 135
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 36 EIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQ 95
E+Q K++ +I K + GQ A A+++ + +VR N + + ++ + I +R+ + +
Sbjct: 40 ELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSS 99
Query: 96 RECPLDLKEAISSVCFAAPRCADLPELLQVQMLF 129
+ + EA + + R +LP+L ++ M F
Sbjct: 100 DQMTRSMSEA-TGLLAGMNRTMNLPQLQRISMEF 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,128,602
Number of Sequences: 539616
Number of extensions: 7475320
Number of successful extensions: 21808
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 21636
Number of HSP's gapped (non-prelim): 275
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)