BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009858
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 170/378 (44%), Gaps = 35/378 (9%)
Query: 98 LDLRSNLLQGPV-----PAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
LDL SN GP+ P + ++ + NN F G+IP + N S + L LS N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCAN 212
TIP +G+ SK LR L L N G IP+ +L G +P L NC N
Sbjct: 430 TIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
L + L NN++ P W+G L L +L L +N F G++ D L LDL+ N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNL 546
Query: 273 FTGSLPAMFFKNMKAMTDIGEAA--------DENKSKYMG-------ETYYEDSVTLIIK 317
F G++PA FK + A D K + G + + + +
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 318 RQEVKLM-KILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
R + ++ T+ +D+S N G IP+ +G + L +LNL N +S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 366 GNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
G+IP N LDG IP+ ++ LT L ++LS N L G IPE QF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 426 SSDSYGGNLGLCGFPLSK 443
+ N GLCG+PL +
Sbjct: 727 PPAKFLNNPGLCGYPLPR 744
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 123/341 (36%), Gaps = 78/341 (22%)
Query: 90 LPWKNLEYLDLRSNLLQGPVP----APSSNMRVFLISNNKFIGEIPRL------------ 133
LP K+L+YL L N G +P + +S N F G +P
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 134 -------------ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIP 180
+ +++LDLS N SG +PE + N S SL LDL N F G I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 181 ETF---PKXXXXXXXXXXXXELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL 237
PK G +P +L NC+ L L L N + T P LG+L +L
Sbjct: 383 PNLCQNPKNTLQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 238 QVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE 297
+ L L N G + + Y L L L N+ TG +P+
Sbjct: 442 RDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSG----------------- 482
Query: 298 NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLL 357
+ T I LS N GEIP+ +G+L +L +L
Sbjct: 483 --------------------------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 358 NLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTR 398
LS N SGNIP N+ +G IP + +
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 143/364 (39%), Gaps = 45/364 (12%)
Query: 95 LEYLDLRSNLLQGPVP-----APSSNMRVFLISNN--KFIGEIPRLICNTSTIEILDLSN 147
L LDL N L GPV S ++ +S+N F G++ + +++E+LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 148 NSLSGT--IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPR 205
NS+SG + + + L+ L + N+ G + + + +P
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 215
Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGT----------------------LRELQVLILR 243
L +C+ LQ LD+ NK+ F + T L+ LQ L L
Sbjct: 216 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI-------GEAAD 296
NKF G + D+ + L LDLS N+F G++P F + GE
Sbjct: 275 ENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI-PEL-MGKLHSL 354
+ K G + S L + T+DLS N+F G I P L ++L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 355 RLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
+ L L N +G IP N L G IP L L+ L L L N LEG
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 415 RIPE 418
IP+
Sbjct: 454 EIPQ 457
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 97 YLDLRSNLLQGPVPAPSSNMRVFLISN---NKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
+LD+ N+L G +P +M I N N G IP + + + ILDLS+N L G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIP-----ETFP 184
IP+ + + L +DL N G IP ETFP
Sbjct: 693 IPQAMSALTM-LTEIDLSNNNLSGPIPEMGQFETFP 727
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 170/378 (44%), Gaps = 35/378 (9%)
Query: 98 LDLRSNLLQGPV-----PAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
LDL SN GP+ P + ++ + NN F G+IP + N S + L LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCAN 212
TIP +G+ SK LR L L N G IP+ +L G +P L NC N
Sbjct: 433 TIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
L + L NN++ P W+G L L +L L +N F G++ D L LDL+ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNL 549
Query: 273 FTGSLPAMFFKNMKAMTDIGEAA--------DENKSKYMG-------ETYYEDSVTLIIK 317
F G++PA FK + A D K + G + + + +
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 318 RQEVKLM-KILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
R + ++ T+ +D+S N G IP+ +G + L +LNL N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 366 GNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
G+IP N LDG IP+ ++ LT L ++LS N L G IPE QF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 426 SSDSYGGNLGLCGFPLSK 443
+ N GLCG+PL +
Sbjct: 730 PPAKFLNNPGLCGYPLPR 747
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 123/341 (36%), Gaps = 78/341 (22%)
Query: 90 LPWKNLEYLDLRSNLLQGPVP----APSSNMRVFLISNNKFIGEIPRL------------ 133
LP K+L+YL L N G +P + +S N F G +P
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 134 -------------ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIP 180
+ +++LDLS N SG +PE + N S SL LDL N F G I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 181 ETF---PKXXXXXXXXXXXXELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL 237
PK G +P +L NC+ L L L N + T P LG+L +L
Sbjct: 386 PNLCQNPKNTLQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 238 QVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE 297
+ L L N G + + Y L L L N+ TG +P+
Sbjct: 445 RDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSG----------------- 485
Query: 298 NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLL 357
+ T I LS N GEIP+ +G+L +L +L
Sbjct: 486 --------------------------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 358 NLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTR 398
LS N SGNIP N+ +G IP + +
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 143/364 (39%), Gaps = 45/364 (12%)
Query: 95 LEYLDLRSNLLQGPVP-----APSSNMRVFLISNN--KFIGEIPRLICNTSTIEILDLSN 147
L LDL N L GPV S ++ +S+N F G++ + +++E+LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 148 NSLSGT--IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPR 205
NS+SG + + + L+ L + N+ G + + + +P
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 218
Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGT----------------------LRELQVLILR 243
L +C+ LQ LD+ NK+ F + T L+ LQ L L
Sbjct: 219 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI-------GEAAD 296
NKF G + D+ + L LDLS N+F G++P F + GE
Sbjct: 278 ENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI-PEL-MGKLHSL 354
+ K G + S L + T+DLS N+F G I P L ++L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 355 RLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
+ L L N +G IP N L G IP L L+ L L L N LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 415 RIPE 418
IP+
Sbjct: 457 EIPQ 460
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 97 YLDLRSNLLQGPVPAPSSNMRVFLISN---NKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
+LD+ N+L G +P +M I N N G IP + + + ILDLS+N L G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIP-----ETFP 184
IP+ + + L +DL N G IP ETFP
Sbjct: 696 IPQAMSALTM-LTEIDLSNNNLSGPIPEMGQFETFP 730
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 19/250 (7%)
Query: 203 VPRSLLNCANLQVLDLGN-NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261
+P SL N L L +G N + P + L +L L + G + D+ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IK 125
Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTD-IGEAADENK-SKYMGETYYEDS---VTLII 316
L LD S N +G+LP ++ ++ + +G D N+ S + ++Y S ++ I
Sbjct: 126 TLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 317 KRQEVKLMKILTIFTT-----IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXX 371
R + KI F +DLS+N G+ L G + + ++L++N L+ ++
Sbjct: 182 SRNRLT-GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK 239
Query: 372 XXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYG 431
N + G +P+ LT+L FL LN+S N L G IP+G F +Y
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 432 GNLGLCGFPL 441
N LCG PL
Sbjct: 300 NNKCLCGSPL 309
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 82 PKLLGNKKLPWKNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTS 138
P L N LP+ N Y+ +NL+ GP+P A + + I++ G IP +
Sbjct: 69 PSSLAN--LPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 139 TIEILDLSNNSLSGT------------------------IPECIGNFSKSLRVLDLRKNR 174
T+ LD S N+LSGT IP+ G+FSK + + +NR
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 175 FHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL 234
G IP TF L G + N Q + L N + +G
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243
Query: 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP 278
+ L L LR+N+ YG L F L L++S NN G +P
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 98 LDLRSNLLQGPVPAPSSNMRVFLI--SNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP 155
+ + N L G +P +N+ + + S N G+ L + + + L+ NSL+ +
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 156 ECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCANLQV 215
+ SK+L LDLR NR +GT+P+ + L G +P+ NLQ
Sbjct: 239 KV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQR 292
Query: 216 LDL---GNNK 222
D+ NNK
Sbjct: 293 FDVSAYANNK 302
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 103/291 (35%), Gaps = 46/291 (15%)
Query: 138 STIEILDLSNNSLSGTIPECIGNFSK---SLRVLDLRKNRFHGTIPETFPKXXXXXXXXX 194
+ +E+L L+ +L G + GNF K SL +L LR N P +F
Sbjct: 103 ANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF----------- 149
Query: 195 XXXELVGSVPRSLLNCANLQVLDLGNNKMKD-------TFPHWLGTLRELQVLILRS-NK 246
LN VLDL NK+K F TL L + L+ N+
Sbjct: 150 ------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE---AADENKSKYM 303
++ + + + LDLS N F S+ FF + A T I + N
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSF 256
Query: 304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI 363
G T ++D K E +K T DLSK+ + + L L L+QN
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 364 LSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
++ N L + R L L VL+LS N +
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 88/239 (36%), Gaps = 46/239 (19%)
Query: 138 STIEILDLSNNSLSGTIPECIGNFSK---SLRVLDLRKNRFHGTIPETFPKXXXXXXXXX 194
+ +E+L L+ +L G + GNF K SL +L LR N P +F
Sbjct: 103 ANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF----------- 149
Query: 195 XXXELVGSVPRSLLNCANLQVLDLGNNKMKD-------TFPHWLGTLRELQVLILRS-NK 246
LN VLDL NK+K F TL L + L+ N+
Sbjct: 150 ------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE---AADENKSKYM 303
++ + + + LDLS N F S+ FF + A T I + N
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSF 256
Query: 304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN 362
G T ++D K E +K T DLSK+ + + L L L+QN
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXX 195
N S++E LD+S NSL+ + +++S+ VL+L N G++ P
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 196 XXELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
+ S+P+ + + LQ L++ +N++K L LQ + L N +
Sbjct: 461 R---IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 24/134 (17%)
Query: 300 SKYMGETYYEDSVTLIIKRQEVK-------LMKILTIFTTIDLSKNSFHGEIPE-LMGKL 351
S + G + + TLI++R +K + K ++ T+D+S NS + +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 352 HSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLD------GVIPRELTRLTFLAVL 405
S+ +LNLS N+L+G++ VLD IP+++T L L L
Sbjct: 428 ESILVLNLSSNMLTGSV---------FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQEL 478
Query: 406 NLSRNKLEGRIPEG 419
N++ N+L+ +P+G
Sbjct: 479 NVASNQLKS-VPDG 491
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
A L L L NN+++DT L L+ L++L +R+NK L+ + SKL +LDL
Sbjct: 106 ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHG 159
Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV 312
N T + K + + G+ KY E Y ++V
Sbjct: 160 NEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 84 LLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTST-IEI 142
+L + LP NLE LD+ N L P P ++ V I++NKFI E C ST I
Sbjct: 518 VLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE-----CELSTFINW 571
Query: 143 LDLSNNSLSG 152
L+ +N +++G
Sbjct: 572 LNHTNVTIAG 581
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 25/99 (25%)
Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
N NL++LDLG++K + L + F G +E YF L
Sbjct: 71 NLPNLRILDLGSSK----------------IYFLHPDAFQGLFHLFELRLYFCGLS---- 110
Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
L +F+N+KA+T + + ++ +S Y+ ++
Sbjct: 111 -----DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 277 LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDS----VTLIIKRQEVKLMK-----IL 327
+P + +++K++ + + + +Y+ + ED+ TLI+++ + ++ +L
Sbjct: 325 VPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLL 384
Query: 328 TI--FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQ---NILSGNIP 369
T+ T ID+SKNSFH +PE ++ LNLS + ++G IP
Sbjct: 385 TLKNLTNIDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIP 430
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 202 SVPRSLLNCANL-------------QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248
S ++L+NC N+ Q L L NN++ P L LQ L SNK
Sbjct: 11 SCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-- 68
Query: 249 GHLRDYEADYY--FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI 291
L + ++L LDL N+N S+P F N+K++T I
Sbjct: 69 --LTAIPTGVFDKLTQLTQLDL-NDNHLKSIPRGAFDNLKSLTHI 110
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY--F 260
VP+ L N +L ++DL NN++ + +L LIL Y LR +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS----YNRLRCIPPRTFDGL 101
Query: 261 SKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296
LR+L L N+ + +P F ++ A++ + A+
Sbjct: 102 KSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 216 LDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274
LD NN + DT G L EL+ LIL+ N+ + E L+ LD+S N+ +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLIC----NTSTIEILDLSNN 148
+ LEYLDL N L P+ N++ +S N F +P IC N S ++ L LS
Sbjct: 69 QELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF-DALP--ICKEFGNMSQLKFLGLSTT 125
Query: 149 SL--SGTIPECIGNFSKSLRVL 168
L S +P N SK L VL
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVL 147
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 15/61 (24%)
Query: 114 SNMRVFLISNNKF--------------IGEIPRLICNTSTIEILDLSNNSLSGTIPECIG 159
SN+++F IS N F + E+P I N S + +LDLS+N L+ ++P +G
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290
Query: 160 N 160
+
Sbjct: 291 S 291
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 46/207 (22%)
Query: 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL-- 150
K+LE+LDL NL M + N+ G P +++ L LS N L
Sbjct: 334 KSLEFLDLSENL-----------MVEEYLKNSACKGAWP-------SLQTLVLSQNHLRS 375
Query: 151 ---SGTIPECIGNFSKSLRVLDLRKNRFHGTIPET--FPKXXXXXXXXXXXXELVGS-VP 204
+G I + N + LD+ +N FH +P++ +P+ +V + +P
Sbjct: 376 MQKTGEILLTLKNLTS----LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430
Query: 205 RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
++ L+VLD+ NN + D+F +L L+EL + NK L+ F L
Sbjct: 431 QT------LEVLDVSNNNL-DSFSLFLPRLQELYI---SRNK----LKTLPDASLFPVLL 476
Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTDI 291
++ +S N S+P F + ++ I
Sbjct: 477 VMKISRNQL-KSVPDGIFDRLTSLQKI 502
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 90 LPWKNLEYLDLRSNLLQGPVPAPSSNMR---VFLISNNKFIGEIPRLICNTSTIEILDLS 146
+P NL YLDL SN L S+++ V L+ NN + + + ++ L LS
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 147 NNSLSGTIPECI--GNFSKSLRVLDLRKNRF 175
N +S E I GN L +LDL N+
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 95 LEYLDLRSNLL---QGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
LE+L+L+ N + +G V + ++ +S+NK P + + + + L NN L
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKL- 226
Query: 152 GTIPECIGNFSKSLRVLDLRKNRFH-GTIPETFPK 185
+ E FS++L DLR N FH GT+ + F K
Sbjct: 227 -VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 95 LEYLDLRSNLL---QGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
LE+L+L+ N + +G V + ++ +S+NK P + + + + L NN L
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKL- 226
Query: 152 GTIPECIGNFSKSLRVLDLRKNRFH-GTIPETFPK 185
+ E FS++L DLR N FH GT+ + F K
Sbjct: 227 -VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR 171
N S +EILD S S T E + NF +DLR
Sbjct: 386 NPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLR 421
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXX 197
S++E+L ++ NS I ++L LDL + + P F
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL----------- 198
Query: 198 ELVGSVPRSLLNCANLQVLDLGNNKM--KDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
++LQVL++ +N DTFP+ L LQVL N + E
Sbjct: 199 -------------SSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNHIMTS-KKQE 242
Query: 256 ADYYFSKLRILDLSNNNF 273
++ S L L+L+ N+F
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,056,664
Number of Sequences: 62578
Number of extensions: 541711
Number of successful extensions: 1478
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 152
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)