Query 009858
Match_columns 523
No_of_seqs 464 out of 5195
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 18:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-41 7.7E-46 375.4 25.2 399 36-440 180-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-38 2.6E-43 355.2 23.4 397 36-440 156-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.2E-35 1.8E-39 278.6 3.7 344 40-409 98-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 1E-33 2.2E-38 271.2 2.3 369 70-442 79-458 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.4E-28 3.1E-33 237.7 4.8 326 35-417 46-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-29 2.6E-34 245.1 -4.4 323 91-442 53-381 (1255)
7 PLN03210 Resistant to P. syrin 99.9 1.5E-24 3.3E-29 242.5 19.6 398 5-437 472-907 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 1.2E-27 2.7E-32 220.1 -5.4 390 29-434 99-539 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 8.3E-26 1.8E-30 208.1 -1.5 294 92-418 205-544 (565)
10 KOG0618 Serine/threonine phosp 99.9 3.1E-24 6.8E-29 216.9 -0.5 221 211-436 241-489 (1081)
11 PRK15387 E3 ubiquitin-protein 99.9 7.1E-22 1.5E-26 205.8 16.0 263 93-418 201-463 (788)
12 KOG4237 Extracellular matrix p 99.9 4.2E-24 9.1E-29 196.6 -3.6 289 93-414 67-360 (498)
13 KOG0618 Serine/threonine phosp 99.9 2.7E-23 5.9E-28 210.2 1.2 266 93-411 219-487 (1081)
14 PLN03210 Resistant to P. syrin 99.9 3E-20 6.6E-25 208.1 23.7 290 92-413 610-906 (1153)
15 KOG4237 Extracellular matrix p 99.9 2.1E-23 4.5E-28 192.1 -1.5 311 97-441 50-364 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 6.1E-21 1.3E-25 200.2 13.5 247 93-413 178-428 (754)
17 PRK15387 E3 ubiquitin-protein 99.8 2.8E-20 6E-25 194.0 16.4 256 114-435 201-457 (788)
18 PRK15370 E3 ubiquitin-protein 99.8 1.8E-20 3.9E-25 196.7 10.6 227 93-390 199-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.6E-20 5.6E-25 181.7 2.1 260 113-412 22-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-19 6.2E-24 174.3 2.3 258 118-415 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 1.3E-19 2.9E-24 148.4 -3.4 162 164-399 34-195 (264)
22 KOG0617 Ras suppressor protein 99.7 3.5E-19 7.5E-24 146.0 -5.6 159 91-254 31-192 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.7 3.1E-17 6.7E-22 175.1 5.4 189 3-220 458-651 (889)
24 PLN03150 hypothetical protein; 99.6 4.2E-15 9.1E-20 155.8 11.1 118 329-446 419-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 6.8E-14 1.5E-18 135.6 -4.2 155 113-279 74-228 (722)
26 PLN03150 hypothetical protein; 99.3 1.8E-11 4E-16 128.6 11.9 92 327-418 441-533 (623)
27 COG4886 Leucine-rich repeat (L 99.3 1.4E-11 3E-16 123.7 9.1 101 142-247 97-198 (394)
28 KOG3207 Beta-tubulin folding c 99.3 1.9E-12 4.1E-17 122.0 2.4 216 34-275 111-340 (505)
29 KOG0532 Leucine-rich repeat (L 99.2 8.3E-13 1.8E-17 128.2 -3.7 172 92-274 74-247 (722)
30 COG4886 Leucine-rich repeat (L 99.2 4.8E-11 1E-15 119.8 8.3 197 167-417 97-294 (394)
31 KOG4658 Apoptotic ATPase [Sign 99.2 1.9E-11 4.1E-16 131.2 4.8 280 113-415 522-809 (889)
32 PF14580 LRR_9: Leucine-rich r 99.1 5E-11 1.1E-15 102.7 4.0 107 136-248 17-126 (175)
33 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.5E-16 113.7 -0.0 90 324-413 209-311 (382)
34 KOG3207 Beta-tubulin folding c 99.1 3.9E-11 8.6E-16 113.2 3.1 206 164-414 122-340 (505)
35 KOG1909 Ran GTPase-activating 99.1 2.1E-11 4.6E-16 111.9 1.0 249 91-389 28-311 (382)
36 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.4E-16 110.3 0.0 86 327-415 328-414 (490)
37 PF14580 LRR_9: Leucine-rich r 99.0 7.5E-10 1.6E-14 95.5 7.7 140 147-295 6-149 (175)
38 KOG1259 Nischarin, modulator o 99.0 6.5E-11 1.4E-15 106.4 0.1 129 138-274 284-412 (490)
39 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 117.5 0.2 245 113-417 71-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 5.5E-10 1.2E-14 79.1 2.4 60 353-412 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.9E-15 115.2 -0.2 219 136-413 70-290 (414)
42 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.7E-14 77.2 2.5 61 328-388 1-61 (61)
43 KOG2120 SCF ubiquitin ligase, 98.6 4.3E-09 9.3E-14 94.8 -1.4 224 141-410 139-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.5 1.3E-09 2.7E-14 109.3 -7.9 178 88-274 104-292 (1096)
45 KOG2982 Uncharacterized conser 98.5 5.6E-08 1.2E-12 87.8 2.6 82 327-408 198-287 (418)
46 KOG2982 Uncharacterized conser 98.4 2.6E-07 5.7E-12 83.5 5.6 69 350-418 197-267 (418)
47 KOG1859 Leucine-rich repeat pr 98.4 2.2E-08 4.9E-13 100.6 -3.5 104 164-275 165-268 (1096)
48 KOG4579 Leucine-rich repeat (L 98.4 3.1E-08 6.8E-13 79.0 -2.4 87 328-418 53-140 (177)
49 KOG2120 SCF ubiquitin ligase, 98.2 7.1E-08 1.5E-12 87.1 -3.3 228 117-389 139-376 (419)
50 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.4E-12 76.0 -2.0 81 330-413 29-113 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.1 1.5E-06 3.2E-11 77.7 2.0 65 210-274 156-227 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.1 3.5E-07 7.6E-12 81.7 -2.1 193 183-413 88-316 (388)
53 KOG3665 ZYG-1-like serine/thre 98.0 2E-06 4.4E-11 90.6 2.4 153 138-292 122-281 (699)
54 PRK15386 type III secretion pr 98.0 3.2E-05 6.8E-10 75.3 9.8 76 158-246 48-123 (426)
55 PRK15386 type III secretion pr 98.0 2.4E-05 5.1E-10 76.2 8.0 133 92-246 51-188 (426)
56 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.6E-10 52.0 4.0 36 115-151 2-37 (44)
57 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.2E-10 67.8 6.1 107 113-222 41-151 (233)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 51.8 3.3 36 139-176 2-37 (44)
59 KOG1644 U2-associated snRNP A' 97.9 3.1E-05 6.7E-10 66.6 6.2 129 140-272 21-151 (233)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.5E-10 85.0 2.1 148 93-243 122-283 (699)
61 KOG4341 F-box protein containi 97.7 3E-06 6.4E-11 80.5 -3.5 277 93-412 138-438 (483)
62 KOG2739 Leucine-rich acidic nu 97.1 0.0004 8.7E-09 62.5 3.6 59 164-224 44-104 (260)
63 PF13306 LRR_5: Leucine rich r 96.8 0.004 8.8E-08 51.3 6.8 11 91-101 10-20 (129)
64 KOG4341 F-box protein containi 96.8 8.2E-05 1.8E-09 70.9 -3.8 87 327-413 319-414 (483)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0058 1.2E-07 50.4 7.5 118 113-238 11-129 (129)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0018 3.8E-08 58.4 2.8 92 180-274 36-129 (260)
67 KOG2123 Uncharacterized conser 96.2 0.00028 6E-09 63.8 -4.0 76 164-241 42-123 (388)
68 KOG2123 Uncharacterized conser 96.2 0.00037 8.1E-09 63.0 -3.2 80 164-247 20-100 (388)
69 KOG1947 Leucine rich repeat pr 95.5 0.0047 1E-07 63.8 0.7 37 210-246 242-280 (482)
70 PF00560 LRR_1: Leucine Rich R 95.4 0.0062 1.3E-07 32.6 0.6 12 165-176 2-13 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0091 2E-07 31.9 1.2 20 139-159 1-20 (22)
72 KOG1947 Leucine rich repeat pr 95.0 0.0069 1.5E-07 62.5 0.3 62 113-174 242-306 (482)
73 KOG4308 LRR-containing protein 94.1 0.00051 1.1E-08 69.6 -10.3 61 330-390 235-304 (478)
74 PF13504 LRR_7: Leucine rich r 94.1 0.037 7.9E-07 27.4 1.4 13 139-151 2-14 (17)
75 KOG4308 LRR-containing protein 93.8 0.00071 1.5E-08 68.5 -9.9 87 327-413 203-303 (478)
76 KOG0473 Leucine-rich repeat pr 92.6 0.0033 7.2E-08 55.5 -6.2 86 134-223 38-123 (326)
77 smart00369 LRR_TYP Leucine-ric 92.1 0.15 3.2E-06 28.4 2.2 20 376-395 2-21 (26)
78 smart00370 LRR Leucine-rich re 92.1 0.15 3.2E-06 28.4 2.2 20 376-395 2-21 (26)
79 smart00369 LRR_TYP Leucine-ric 91.9 0.15 3.4E-06 28.3 2.2 19 138-157 2-20 (26)
80 smart00370 LRR Leucine-rich re 91.9 0.15 3.4E-06 28.3 2.2 19 138-157 2-20 (26)
81 KOG0473 Leucine-rich repeat pr 91.2 0.01 2.2E-07 52.6 -4.8 65 133-200 60-124 (326)
82 KOG3864 Uncharacterized conser 89.5 0.031 6.7E-07 48.6 -3.2 34 116-149 103-136 (221)
83 PF13516 LRR_6: Leucine Rich r 89.1 0.16 3.5E-06 27.6 0.6 16 138-153 2-17 (24)
84 PF01102 Glycophorin_A: Glycop 82.3 0.25 5.4E-06 39.6 -1.2 19 473-491 66-84 (122)
85 PF04478 Mid2: Mid2 like cell 81.2 1.7 3.6E-05 36.1 3.1 21 472-492 50-70 (154)
86 PF08374 Protocadherin: Protoc 79.1 2.6 5.7E-05 37.0 3.8 15 470-484 37-51 (221)
87 PF08693 SKG6: Transmembrane a 78.5 3.4 7.4E-05 25.7 3.1 17 471-487 12-28 (40)
88 KOG3864 Uncharacterized conser 78.5 0.82 1.8E-05 40.0 0.6 35 188-222 102-136 (221)
89 KOG4242 Predicted myosin-I-bin 77.9 17 0.00036 36.5 9.2 138 139-278 215-371 (553)
90 smart00364 LRR_BAC Leucine-ric 75.4 1.8 4E-05 24.0 1.2 17 139-156 3-19 (26)
91 smart00365 LRR_SD22 Leucine-ri 73.7 3 6.5E-05 23.2 1.8 14 376-389 2-15 (26)
92 smart00368 LRR_RI Leucine rich 66.5 5.2 0.00011 22.6 1.8 14 376-389 2-15 (28)
93 PF08693 SKG6: Transmembrane a 64.2 2.7 5.8E-05 26.1 0.3 28 473-500 10-37 (40)
94 PTZ00382 Variant-specific surf 63.7 7 0.00015 30.1 2.6 13 472-484 67-79 (96)
95 PF01034 Syndecan: Syndecan do 61.4 2.8 6.1E-05 29.0 0.1 13 474-486 16-28 (64)
96 KOG3763 mRNA export factor TAP 57.7 8 0.00017 39.4 2.6 63 113-177 217-284 (585)
97 KOG4242 Predicted myosin-I-bin 52.8 43 0.00093 33.7 6.5 86 328-413 354-453 (553)
98 PF04689 S1FA: DNA binding pro 52.1 9.9 0.00021 26.1 1.5 26 467-492 10-35 (69)
99 KOG3763 mRNA export factor TAP 52.0 6.9 0.00015 39.8 1.1 64 326-391 216-285 (585)
100 TIGR00864 PCC polycystin catio 50.6 11 0.00024 46.2 2.5 33 358-390 1-33 (2740)
101 PF05393 Hum_adeno_E3A: Human 49.3 9.5 0.00021 28.1 1.2 13 475-487 38-50 (94)
102 PF04478 Mid2: Mid2 like cell 47.7 24 0.00053 29.4 3.4 25 468-492 50-74 (154)
103 PF13908 Shisa: Wnt and FGF in 44.7 30 0.00064 30.2 3.9 13 471-483 79-91 (179)
104 PF01102 Glycophorin_A: Glycop 43.5 6.1 0.00013 31.8 -0.6 24 469-492 66-89 (122)
105 PF11770 GAPT: GRB2-binding ad 43.3 5.2 0.00011 32.9 -1.0 8 485-492 24-31 (158)
106 PF06697 DUF1191: Protein of u 41.5 44 0.00095 31.2 4.5 21 472-492 215-235 (278)
107 PF11980 DUF3481: Domain of un 37.8 16 0.00035 26.8 0.8 31 468-498 15-45 (87)
108 smart00367 LRR_CC Leucine-rich 35.6 29 0.00062 19.0 1.5 12 376-387 2-13 (26)
109 PF15069 FAM163: FAM163 family 34.9 28 0.0006 28.6 1.9 29 470-499 5-33 (143)
110 PF15102 TMEM154: TMEM154 prot 34.1 33 0.00071 28.4 2.2 6 470-475 60-65 (146)
111 PF02064 MAS20: MAS20 protein 30.4 17 0.00037 29.3 0.0 13 479-491 4-16 (121)
112 PTZ00234 variable surface prot 28.6 28 0.0006 35.1 1.2 10 483-492 371-380 (433)
113 PF14991 MLANA: Protein melan- 28.2 19 0.00041 28.2 -0.1 23 484-506 38-60 (118)
114 PF04971 Lysis_S: Lysis protei 27.1 30 0.00064 24.4 0.7 13 473-485 35-47 (68)
115 COG1862 YajC Preprotein transl 26.0 22 0.00047 27.3 -0.1 12 511-522 27-38 (97)
116 PF05545 FixQ: Cbb3-type cytoc 24.3 44 0.00095 21.9 1.1 10 482-491 19-28 (49)
117 PF14575 EphA2_TM: Ephrin type 24.1 33 0.00071 25.0 0.6 17 476-492 6-22 (75)
118 TIGR01478 STEVOR variant surfa 23.8 23 0.00049 32.9 -0.4 17 475-491 262-278 (295)
119 PTZ00370 STEVOR; Provisional 23.6 23 0.0005 32.9 -0.4 17 475-491 258-274 (296)
120 PHA03265 envelope glycoprotein 22.1 57 0.0012 31.3 1.8 16 477-492 355-370 (402)
121 PF15345 TMEM51: Transmembrane 22.1 2E+02 0.0043 26.1 5.0 16 477-492 64-79 (233)
122 PF15176 LRR19-TM: Leucine-ric 21.6 25 0.00054 26.9 -0.5 33 466-501 14-46 (102)
123 PF15050 SCIMP: SCIMP protein 21.4 27 0.00059 27.5 -0.3 14 479-492 16-29 (133)
124 PF03302 VSP: Giardia variant- 21.3 68 0.0015 32.1 2.3 20 472-491 368-389 (397)
125 COG3105 Uncharacterized protei 21.3 42 0.0009 27.0 0.7 20 473-492 8-27 (138)
126 PF06422 PDR_CDR: CDR ABC tran 21.3 61 0.0013 25.3 1.6 20 473-492 51-70 (103)
127 TIGR00864 PCC polycystin catio 21.2 54 0.0012 40.7 1.8 32 334-365 1-32 (2740)
128 TIGR02736 cbb3_Q_epsi cytochro 21.1 47 0.001 22.3 0.7 7 516-522 25-31 (56)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-41 Score=375.42 Aligned_cols=399 Identities=30% Similarity=0.416 Sum_probs=277.8
Q ss_pred hhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhcc--ccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-
Q 009858 36 ISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAE--FEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP- 112 (523)
Q Consensus 36 l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~- 112 (523)
++..+..+.+|++|+++.|.+.+... ..+.....+.. +..+.+....+..+..+++|++|++++|.+++..|..
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 34556677888999999887654322 22222233332 2333333344444556778888888888877766654
Q ss_pred --CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858 113 --SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT 190 (523)
Q Consensus 113 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (523)
+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+..+. +|++|++++|.+.+..|..+..+++|+
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCC
Confidence 67777788887777777777777777777777777777777777777776 677777777777777777777777777
Q ss_pred EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270 (523)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 270 (523)
.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+..|..+ ..+++|+.|++++
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~ 413 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQD 413 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcC
Confidence 77777777776777777777777777777777666666666555555555555555555444433 3344555555555
Q ss_pred ccCCCCCchH-----------------------HHhccccccccccccccccccccCccccccceEE-----EecchhHH
Q 009858 271 NNFTGSLPAM-----------------------FFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL-----IIKRQEVK 322 (523)
Q Consensus 271 n~l~~~~p~~-----------------------~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 322 (523)
|.+++.+|.. .+..+++|+.+++.++.................+ .+......
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence 5544444422 1233444444444443321110000000001111 11222334
Q ss_pred HHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCC
Q 009858 323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFL 402 (523)
Q Consensus 323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 402 (523)
.+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus 494 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858 403 AVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 403 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+.|++++|+++|.+|...++.++...++.||+.+|+.+
T Consensus 574 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-38 Score=355.19 Aligned_cols=397 Identities=27% Similarity=0.367 Sum_probs=323.4
Q ss_pred hhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhcc--ccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-
Q 009858 36 ISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAE--FEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP- 112 (523)
Q Consensus 36 l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~- 112 (523)
+...+..+.+|++|+++.|.+.+..+. .+.+...+.. +..+.+...++..+..+++|++|++++|.+++.+|..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPN---SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCCh---hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 345566778999999999987653322 2333333333 3334444445555677899999999999999888865
Q ss_pred --CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858 113 --SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT 190 (523)
Q Consensus 113 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (523)
+++|++|++++|.+.+..|..|.++++|++|++++|.+++.+|..+..+. +|++|++++|.+.+..|..+.++++|+
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeeccCCChhHcCCCCCc
Confidence 89999999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270 (523)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 270 (523)
+|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+ ..+++|+.|++++
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~ 389 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFS 389 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999988888766 5688999999999
Q ss_pred ccCCCCCchHHHhccccccccccccccccccccC------c--------cc-----------cccceEEEec-----chh
Q 009858 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG------E--------TY-----------YEDSVTLIIK-----RQE 320 (523)
Q Consensus 271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~------~--------~~-----------~~~~~~~~~~-----~~~ 320 (523)
|.+.+.+|.. +..+++|+.+++..+........ . .. ......+... ...
T Consensus 390 n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 390 NSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred CEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 9999888854 67888999888877654321100 0 00 0000000000 000
Q ss_pred HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC
Q 009858 321 VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT 400 (523)
Q Consensus 321 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 400 (523)
... ...++|+.|++++|.+++..|..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..++
T Consensus 469 p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 469 PDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred Ccc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 111 1246788999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858 401 FLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 401 ~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+|+.|++++|++++.+|.. ..+..+...++.+|...+..|
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999974 345667777788887665444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-35 Score=278.62 Aligned_cols=344 Identities=21% Similarity=0.239 Sum_probs=232.8
Q ss_pred HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCC
Q 009858 40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNM 116 (523)
Q Consensus 40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L 116 (523)
+..+++|+++++..+.+..++... .......-.++..+.++.+-+..+.-++.|++||||.|.|+.+.... -.++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~--~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFG--HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HhcCCcceeeeeccchhhhccccc--ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 455667777777777665543322 12223445566667777777776777788888888888887655444 4578
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhh-cccCCcEEEccCCcccccCCCCCCCCCCCCEEECc
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN-FSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN 195 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 195 (523)
++|+|++|+++......|.++.+|.+|.|+.|+++ .+|...++ ++ +|+.|+|.+|+|.-.---.|.+|++|+.|.|.
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 88889888888888888888888888888888888 67766555 66 78889998888884435578888888888888
Q ss_pred CCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCC
Q 009858 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG 275 (523)
Q Consensus 196 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (523)
.|++.....+.|-.|.++++|+|..|++...-..++.++++|+.|+++.|.+...-+... ...++|++|+|++|.++
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~- 330 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT- 330 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc-
Confidence 888887777788888899999999998887777888888999999999988876666655 55788999999999888
Q ss_pred CCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcc---hhhcCcc
Q 009858 276 SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP---ELMGKLH 352 (523)
Q Consensus 276 ~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~ 352 (523)
.+++..|..+..|+.|.++.+. +.......|..+.+|+.|||++|.+...+. ..|.+++
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Ns------------------i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNS------------------IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred cCChhHHHHHHHhhhhcccccc------------------hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 6776666665555555554332 111222333445555555555555543332 2344455
Q ss_pred cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409 (523)
Q Consensus 353 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 409 (523)
+|+.|.|.+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|++|.+..
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 55555555555553333455555555555555555555555555554 455554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1e-33 Score=271.23 Aligned_cols=369 Identities=21% Similarity=0.207 Sum_probs=245.1
Q ss_pred hhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC
Q 009858 70 YASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147 (523)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (523)
++...++..+.+.++-...|.++++|+.+++..|.++.++... ..+|+.|+|.+|.++....+.+..++.|+.||||.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 3444455555554444444555666666666666666443322 55566666666666666666666666666666666
Q ss_pred CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCc
Q 009858 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF 227 (523)
Q Consensus 148 n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 227 (523)
|.|+ .+|..-+.-..++++|+|++|+|+......|..+.+|.+|.|+.|+++...+..|..+++|+.|+|..|++.-.-
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 6666 444332222225666666666666666666666666666666666666555556666666666666666665332
Q ss_pred hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCc--
Q 009858 228 PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-- 305 (523)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-- 305 (523)
--.|.++++|+.|.+..|.+...-...+ +.+.++++|+|+.|++. .+...++-+++.|+.|+++.+....-....
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhh
Confidence 3445566666666666666654444444 66777777777777776 555566667777777777766543322111
Q ss_pred ----cccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCC---ccccCCCCC
Q 009858 306 ----TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP---SSLGDLTDL 378 (523)
Q Consensus 306 ----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L 378 (523)
-.........+.......+..+..|++|+|++|.+.......|..+.+|+.|+|++|.+...+. ..|.++++|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 1112223334555666677778888999999998886667788889999999999998876544 357789999
Q ss_pred CEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCCCC
Q 009858 379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLS 442 (523)
Q Consensus 379 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~~~ 442 (523)
+.|+|.+|++..+...+|.+++.|++|||.+|.+...-|....-..++.+.+..-..+|+|.+.
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 9999999999988888999999999999999999877676533335666667777789988654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.4e-28 Score=237.74 Aligned_cols=326 Identities=28% Similarity=0.314 Sum_probs=233.5
Q ss_pred hhhHHHHHHHhhhhhcCCcccccc----ccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCC
Q 009858 35 SISSFVYVLLFLELLAGSTCVVHG----LQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVP 110 (523)
Q Consensus 35 ~l~~~~~~~~~l~~l~~~~c~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 110 (523)
.++.-++.+.+|+.|+++.+.+.. +++.|. ..+-.+.-+.+..+++|.. +..+..|+.||||+|++...+.
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~-LRsv~~R~N~LKnsGiP~d----iF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR-LRSVIVRDNNLKNSGIPTD----IFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh-hHHHhhhccccccCCCCch----hcccccceeeecchhhhhhcch
Confidence 345567778888888888887543 233331 0011122234444445433 3357888888888888876554
Q ss_pred CC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCC
Q 009858 111 AP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNN 188 (523)
Q Consensus 111 ~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~ 188 (523)
.. .+++-+|+|++|++..+.-..|.+++.|-+||||+|++. .+|..+..+. +|++|+|++|.+.-..-..+..+++
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchh
Confidence 43 678888888888887555566778888888888888887 8888888887 7888888888776443445556777
Q ss_pred CCEEECcCCCCC-CCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEe
Q 009858 189 LTTLNFNGNELV-GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267 (523)
Q Consensus 189 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 267 (523)
|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|++++|.++...... ....+|+.|+
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLN 274 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLN 274 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhc
Confidence 888888876543 467778888888888888888887 68888888888888888888876433221 3356788888
Q ss_pred ccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCc-Ccch
Q 009858 268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPE 346 (523)
Q Consensus 268 l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~ 346 (523)
+|.|+++ .+|... . .++.|+.|.+.+|+++- -+|.
T Consensus 275 lSrNQLt-~LP~av-c------------------------------------------KL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAV-C------------------------------------------KLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred cccchhc-cchHHH-h------------------------------------------hhHHHHHHHhccCcccccCCcc
Confidence 8888887 666542 2 26777777777777653 3677
Q ss_pred hhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858 347 LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP 417 (523)
Q Consensus 347 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 417 (523)
.++.+.+|+.+..++|.+. .+|..++.+..|+.|.|++|++. .+|+++.-++.|+.||+.+|+-.-..|
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 7888888888888888877 78888888888888888888887 667778888888888888887653333
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.2e-29 Score=245.09 Aligned_cols=323 Identities=25% Similarity=0.329 Sum_probs=235.2
Q ss_pred CCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcE
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRV 167 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~ 167 (523)
.+.+|+.|.+++|++....-.. ++.||.+++.+|++.. -+|..+..+..|..||||+|++. ..|..+.... ++-+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhc-CcEE
Confidence 3567777777777776544433 7777777777777643 35556667777777777777777 7777777665 6777
Q ss_pred EEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
|+|++|+|..+....|.+++.|-.|||++|++. .+|..+..+.+|++|+|++|.+...--..+-.|++|++|.+++.+-
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 777777777444445667777777777777775 6666777777777777777776543333344566677777776543
Q ss_pred c-CcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHh
Q 009858 248 Y-GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326 (523)
Q Consensus 248 ~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (523)
+ ..+|... ..+.+|+.+|+|.|++. .+|+ +.-++.+|+.|+++++........ ...
T Consensus 210 Tl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~~~-------------------~~~ 266 (1255)
T KOG0444|consen 210 TLDNIPTSL--DDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELNMT-------------------EGE 266 (1255)
T ss_pred hhhcCCCch--hhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeeecc-------------------HHH
Confidence 2 2233333 45677777777777776 5564 355677777777776654432221 122
Q ss_pred hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccc-cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG-NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 405 (523)
..+|++|++|.|+++ .+|..+..++.|+.|.+.+|+++- -+|..++.+..|+.+..++|.+. ..|+.+..++.|+.|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 578999999999999 999999999999999999998863 58899999999999999999998 889999999999999
Q ss_pred ECCCCcCcccCCCCCC-CCcccCCccCCCCCCCCCCCC
Q 009858 406 NLSRNKLEGRIPEGNQ-FATFSSDSYGGNLGLCGFPLS 442 (523)
Q Consensus 406 ~Ls~N~l~~~~p~~~~-~~~~~~~~~~gn~~lc~~~~~ 442 (523)
.|+.|.+- .+|++.+ +..+..++...||.+--.|-+
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 99999998 6787654 356777888899888765543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.5e-24 Score=242.52 Aligned_cols=398 Identities=15% Similarity=0.231 Sum_probs=250.4
Q ss_pred ccccchhhHhhhhhhhhcccchhhHHHHhhhhhHHHHHHHhhhhhcCCcccccc---ccCCCccc-hhhhhhhccccccC
Q 009858 5 VMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHG---LQSHPRNT-LKDYASAAEFEASD 80 (523)
Q Consensus 5 ~~eLi~r~~~q~~~~~~~~~~~~~~hdl~~~l~~~~~~~~~l~~l~~~~c~~~~---~~~~~~~~-~~~~~~~~~l~~~~ 80 (523)
+++|+.+||++... . .++ |||+++++|..+..-..-. -....++.. +..+.... -........+..+.
T Consensus 472 l~~L~~ksLi~~~~--~---~~~-MHdLl~~~~r~i~~~~~~~--~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 472 LKNLVDKSLIHVRE--D---IVE-MHSLLQEMGKEIVRAQSNE--PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred hHHHHhcCCEEEcC--C---eEE-hhhHHHHHHHHHHHhhcCC--CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 67789999987632 1 244 9999999999887332100 000000000 00000000 00000000111111
Q ss_pred C--CcccCCCCCCCCCccEEEccCCCC------ccCCCCC----CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCC
Q 009858 81 G--PKLLGNKKLPWKNLEYLDLRSNLL------QGPVPAP----SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN 148 (523)
Q Consensus 81 ~--~~~~~~~~~~~~~L~~L~L~~n~l------~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (523)
+ ..+...+|.++++|+.|.+..+.. ...+|.. ..+|+.|.+.++.+. .+|..| ...+|+.|++++|
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGS 621 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCc
Confidence 1 123345688899999999976542 2233433 467999999999886 667666 5789999999999
Q ss_pred cCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch
Q 009858 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP 228 (523)
Q Consensus 149 ~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 228 (523)
.+. .+|..+..+. +|++|+|+++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|...+.+|
T Consensus 622 ~l~-~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 622 KLE-KLWDGVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccc-ccccccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 998 8888888887 899999998865556664 7889999999999988777899999999999999999987666777
Q ss_pred HhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcccc
Q 009858 229 HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYY 308 (523)
Q Consensus 229 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 308 (523)
..+ ++++|+.|++++|...+..|.. .++|++|++++|.+. .+|... .+++|..|.+..+.....+..
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~---- 765 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWER---- 765 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccc----
Confidence 655 7899999999999765555532 468999999999986 677543 466677666654321110000
Q ss_pred ccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCC------------
Q 009858 309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT------------ 376 (523)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~------------ 376 (523)
...........+++|+.|+|++|...+.+|.++.++++|+.|+|++|...+.+|..+ .++
T Consensus 766 -------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 766 -------VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred -------ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 000000011123556666666665555566666666666666666654333444432 333
Q ss_pred ---------CCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCC-CCCCCcccCCccCCCCCCC
Q 009858 377 ---------DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE-GNQFATFSSDSYGGNLGLC 437 (523)
Q Consensus 377 ---------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~gn~~lc 437 (523)
+|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|. ...+..+....+.+++.+.
T Consensus 838 L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 838 LRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 4555566666665 4566777788888888887543334443 3445556666666665554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.2e-27 Score=220.07 Aligned_cols=390 Identities=24% Similarity=0.313 Sum_probs=250.2
Q ss_pred HHHHhhhhhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccc--cCCCcccCCCCCCCCCccEEEccCCCCc
Q 009858 29 VKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEA--SDGPKLLGNKKLPWKNLEYLDLRSNLLQ 106 (523)
Q Consensus 29 ~hdl~~~l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 106 (523)
.|.-+..+...+..+..++.++.+......+.+ ...++....++.. +.+...+ ..+..+.++..|++.+|++.
T Consensus 99 s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~----~i~~~~~l~dl~~~~N~i~slp-~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 99 SHNKLSELPEQIGSLISLVKLDCSSNELKELPD----SIGRLLDLEDLDATNNQISSLP-EDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred ccchHhhccHHHhhhhhhhhhhccccceeecCc----hHHHHhhhhhhhccccccccCc-hHHHHHHHHHHhhccccchh
Confidence 455567777778888888888877776665443 2233333333322 2233222 23345678888999999988
Q ss_pred cCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCC-
Q 009858 107 GPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETF- 183 (523)
Q Consensus 107 ~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~- 183 (523)
..+|.. ++.|+.||...|-+. .+|..++.+.+|..|+|..|++. .+| .|..+. .|.+|+++.|++. .+|...
T Consensus 174 ~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs-~L~Elh~g~N~i~-~lpae~~ 248 (565)
T KOG0472|consen 174 ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS-LLKELHVGENQIE-MLPAEHL 248 (565)
T ss_pred hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccH-HHHHHHhcccHHH-hhHHHHh
Confidence 777765 888888998888877 67778888999999999999987 788 666776 7889999999888 555544
Q ss_pred CCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc-------------
Q 009858 184 PKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH------------- 250 (523)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------------- 250 (523)
..+.++.+||+..|++. +.|..+..+++|+.||+++|.++ .+|..++++ .|+.|.+.+|++...
T Consensus 249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL 325 (565)
T ss_pred cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence 47888899999999887 78888888889999999999888 467788888 888888888865210
Q ss_pred ------------------------CCC--ccccccCCCCcEEeccCccCCCCCchHHHhcccc--ccccccccccccccc
Q 009858 251 ------------------------LRD--YEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKA--MTDIGEAADENKSKY 302 (523)
Q Consensus 251 ------------------------~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~--L~~l~~~~~~~~~~~ 302 (523)
.+. +...+.+.+.++|++++-+++ .+|...|..-+. .+.++++.+......
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 000 001123457888899888888 888887765442 333444433222111
Q ss_pred cCcccccc-----ceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCC
Q 009858 303 MGETYYED-----SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD 377 (523)
Q Consensus 303 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 377 (523)
-+...... ..............+.+++|..|+|++|-+. .+|..++.+..|+.|+|+.|.+. .+|...-.+..
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 00000000 0000111122233444667777777777766 66777777777777777777665 45554444444
Q ss_pred CCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCC
Q 009858 378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL 434 (523)
Q Consensus 378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~ 434 (523)
|+.+-.++|++....|+.+.++..|..|||.+|.+....|.......+..+...|||
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 444444455555555555666666667777777666444444555556666666665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=8.3e-26 Score=208.10 Aligned_cols=294 Identities=24% Similarity=0.321 Sum_probs=187.9
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+.+|..|+|.+|.+...+... +..|.+|.+..|.+.-...+...++.++.+|||.+|+++ +.|+.++-+. +|++||+
T Consensus 205 l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDl 282 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDL 282 (565)
T ss_pred hhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcc
Confidence 455555555555554333111 455555555555555222233346777777777777777 7777777776 6777777
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCC--------------------------------------CCc---cccC
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGS--------------------------------------VPR---SLLN 209 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--------------------------------------~~~---~l~~ 209 (523)
++|.++ .+|.+++++ +|+.|-+.||.+..+ .+. ....
T Consensus 283 SNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 283 SNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred cCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 777777 566677777 777777777765100 000 1112
Q ss_pred CCCCcEEECCCCcCCCCchHhhhcCCC---CCeEEeccccccCcCCCccccccCCCC-cEEeccCccCCCCCchHHHhcc
Q 009858 210 CANLQVLDLGNNKMKDTFPHWLGTLRE---LQVLILRSNKFYGHLRDYEADYYFSKL-RILDLSNNNFTGSLPAMFFKNM 285 (523)
Q Consensus 210 l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~p~~~~~~l 285 (523)
+.+.+.|+++.-+++ .+|+....-.. ....+++.|++.+.+.... .+..+ ..+.+++|.+ ..+...++.+
T Consensus 361 ~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~---~lkelvT~l~lsnn~i--sfv~~~l~~l 434 (565)
T KOG0472|consen 361 IITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV---ELKELVTDLVLSNNKI--SFVPLELSQL 434 (565)
T ss_pred hhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhH---HHHHHHHHHHhhcCcc--ccchHHHHhh
Confidence 344566666666665 34544333333 6677888888764433221 11222 2234444444 2333445666
Q ss_pred ccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365 (523)
Q Consensus 286 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 365 (523)
++++.++++++-... .+.+. ..+..|+.|++|.|.+. .+|..+..+..|+.+-.++|++.
T Consensus 435 ~kLt~L~L~NN~Ln~------------------LP~e~-~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLND------------------LPEEM-GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred hcceeeecccchhhh------------------cchhh-hhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 666666655442111 11111 22566999999999999 89999888889999999999998
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCC
Q 009858 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 366 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 418 (523)
...|..+.+|.+|.+|||.+|.+. .+|..++++.+|++|++++|+|. .|.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 666667999999999999999999 67788999999999999999997 454
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=3.1e-24 Score=216.91 Aligned_cols=221 Identities=27% Similarity=0.361 Sum_probs=142.8
Q ss_pred CCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccc--------------------cccCCCCcEEeccC
Q 009858 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEA--------------------DYYFSKLRILDLSN 270 (523)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--------------------~~~l~~L~~L~l~~ 270 (523)
.+|++++++.|+++ .+|+|++.+.+|+.+.+..|.+.......+. ...++.|+.|++..
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 35666777777776 5678888888888888888877432211111 12366788888888
Q ss_pred ccCCCCCchHHHhcccc-ccccccccccccccc-cCcccc-----ccceEEEecchhHHHHHhhcccccccCCCCccCcC
Q 009858 271 NNFTGSLPAMFFKNMKA-MTDIGEAADENKSKY-MGETYY-----EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE 343 (523)
Q Consensus 271 n~l~~~~p~~~~~~l~~-L~~l~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 343 (523)
|.+. .+|+.++.-+.. +..++.+.+...... .+.... .-..+..........+..+.+|+.|+|++|.+...
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 8886 777766655544 455544433222111 111000 00111122233344455677888888888888733
Q ss_pred cchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc-CCCCCCC
Q 009858 344 IPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR-IPEGNQF 422 (523)
Q Consensus 344 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~ 422 (523)
....+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 3455677888888888888887 67777778888888888888887 455 678889999999999998743 3444444
Q ss_pred CcccCCccCCCCCC
Q 009858 423 ATFSSDSYGGNLGL 436 (523)
Q Consensus 423 ~~~~~~~~~gn~~l 436 (523)
..++.+++.||.++
T Consensus 476 p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccceeeccCCccc
Confidence 67888888898853
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.1e-22 Score=205.82 Aligned_cols=263 Identities=24% Similarity=0.324 Sum_probs=182.6
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
..-..|+++.+.++..++...++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. +++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeeccC
Confidence 345678888888875444446678888888888774 443 2567888888888887 66643 23788888888
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
|.++ .+|..+ .+|+.|++++|+++ .+|. .+++|+.|++++|.+.+ +|.. ..+|+.|++++|.+.+ +|
T Consensus 272 N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 8877 444422 46777888888877 4443 24678888888888774 4432 2356777888887754 33
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (523)
.. ..+|+.|++++|.++ .+|.. ...|+.|++..+.... ++ ..+.+|+.
T Consensus 339 ~l-----p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~--LP--------------------~l~~~L~~ 386 (788)
T PRK15387 339 TL-----PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS--LP--------------------ALPSGLKE 386 (788)
T ss_pred cc-----ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc--Cc--------------------ccccccce
Confidence 21 246888888888887 45532 2344444444332111 00 11357899
Q ss_pred ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..++.|+.|++++|++
T Consensus 387 LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 387 LIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 999999998 45643 367999999999998 46754 357889999999998 6788899999999999999999
Q ss_pred cccCCC
Q 009858 413 EGRIPE 418 (523)
Q Consensus 413 ~~~~p~ 418 (523)
++.+|.
T Consensus 458 s~~~~~ 463 (788)
T PRK15387 458 SERTLQ 463 (788)
T ss_pred CchHHH
Confidence 987665
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=4.2e-24 Score=196.64 Aligned_cols=289 Identities=19% Similarity=0.167 Sum_probs=162.8
Q ss_pred CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC-CcCCccChhh-HhhcccCCcE
Q 009858 93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN-NSLSGTIPEC-IGNFSKSLRV 167 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~-l~~l~~~L~~ 167 (523)
+....++|..|+|+.+++.. +++||+|||++|.|+.+.|++|.+++.|..|-+.+ |+|+ .+|.. |+.+. +|+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~-slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLS-SLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHH-HHHH
Confidence 34555666666665544443 55555555555555555555565555555554444 5555 44443 23333 5555
Q ss_pred EEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
|.+.-|++..+..+.|..+++|..|.+.+|.+..+--..|..+..++.+.+..|.+.. ..+++.+.+.. ..+
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~-- 216 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMN-- 216 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhc--
Confidence 5555555555555555555555555555555543222355555555555555444210 00111110000 000
Q ss_pred cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh
Q 009858 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (523)
+..+ ....-..-..+.+..+...-+..+...++.+.+-....+ ......+...|..+
T Consensus 217 ----~iet--sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-----------------~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 217 ----PIET--SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-----------------FPDSICPAKCFKKL 273 (498)
T ss_pred ----hhhc--ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-----------------CcCCcChHHHHhhc
Confidence 0000 111112222223333321111111111111110000000 00111223447779
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL 407 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 407 (523)
++|+.|+|++|++++.-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|.+|..+.+|.+|++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 99999999999999888899999999999999999998766778999999999999999999999999999999999999
Q ss_pred CCCcCcc
Q 009858 408 SRNKLEG 414 (523)
Q Consensus 408 s~N~l~~ 414 (523)
-.|++-+
T Consensus 354 ~~Np~~C 360 (498)
T KOG4237|consen 354 LSNPFNC 360 (498)
T ss_pred ccCcccC
Confidence 9999863
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-23 Score=210.17 Aligned_cols=266 Identities=29% Similarity=0.348 Sum_probs=203.1
Q ss_pred CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858 93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR 171 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~ 171 (523)
++++.|+.++|.++...+.. ..+|++++++.|+++ .+|+.+..+.+|+.++..+|+++ .+|..+.... +|+.|++.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhh
Confidence 78899999999988655554 778999999999998 45689999999999999999997 8999999998 89999999
Q ss_pred CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCc-cccCCCC-CcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858 172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR-SLLNCAN-LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
+|.+. -+|....++..|++|+|..|++. .+|. .+..+.. |+.|+.+.|.+.....-.=..++.|+.|++.+|.+++
T Consensus 296 ~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 296 YNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 99999 56667788999999999999997 4554 3343433 7888888888763321112246779999999999987
Q ss_pred cCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcc
Q 009858 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329 (523)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (523)
..-..+ .++.+|+.|+|++|.+. .+|...+.+ ++.
T Consensus 374 ~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------------------------le~ 408 (1081)
T KOG0618|consen 374 SCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRK------------------------------------------LEE 408 (1081)
T ss_pred cchhhh--ccccceeeeeecccccc-cCCHHHHhc------------------------------------------hHH
Confidence 654444 67899999999999997 888876665 556
Q ss_pred cccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409 (523)
Q Consensus 330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 409 (523)
|+.|+||||+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++...-.....-+.|++||+++
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence 667777777777 66677777777777777777776 566 567777777777777777653322222226777777777
Q ss_pred Cc
Q 009858 410 NK 411 (523)
Q Consensus 410 N~ 411 (523)
|.
T Consensus 486 N~ 487 (1081)
T KOG0618|consen 486 NT 487 (1081)
T ss_pred Cc
Confidence 76
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3e-20 Score=208.08 Aligned_cols=290 Identities=22% Similarity=0.251 Sum_probs=195.5
Q ss_pred CCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
..+|+.|+++++.+....... +++|+.|+++++.....+| .+..+++|++|+|++|.....+|..+..+. +|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccC-CCCEEe
Confidence 467777777777765433222 6777777777665444555 366677777777777654456777777776 677777
Q ss_pred ccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858 170 LRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
+++|.....+|..+ ++++|++|++++|.....+|.. .++|+.|++++|.+. .+|..+ .+++|+.|.+.++....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence 77764444555544 5677777777777554444432 356777777777765 455443 46667777666533211
Q ss_pred cCCCc-----cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHH
Q 009858 250 HLRDY-----EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM 324 (523)
Q Consensus 250 ~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (523)
..... ......++|+.|++++|.....+|.. ++++++|+.|++..+..... ++..
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~-LP~~------------------ 821 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLET-LPTG------------------ 821 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCe-eCCC------------------
Confidence 10000 00123578999999999877788865 78899999999876543221 1100
Q ss_pred HhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCe
Q 009858 325 KILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV 404 (523)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 404 (523)
..+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|++|.-...+|..+..+++|+.
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 02688999999998655466653 468999999999998 78989999999999999996655567777889999999
Q ss_pred EECCCCcCc
Q 009858 405 LNLSRNKLE 413 (523)
Q Consensus 405 L~Ls~N~l~ 413 (523)
+++++|.--
T Consensus 898 L~l~~C~~L 906 (1153)
T PLN03210 898 VDFSDCGAL 906 (1153)
T ss_pred eecCCCccc
Confidence 999999643
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-23 Score=192.05 Aligned_cols=311 Identities=21% Similarity=0.199 Sum_probs=217.3
Q ss_pred EEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC-Ccc
Q 009858 97 YLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK-NRF 175 (523)
Q Consensus 97 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~-n~l 175 (523)
..+.++-.++.++....+.-..+.|..|.|+.+.+.+|+.+++|+.|||++|+|+..-|++|..+. +|..|-+.+ |+|
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKI 128 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCch
Confidence 445556666655555577888899999999988888999999999999999999977888888887 566665555 899
Q ss_pred cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858 176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255 (523)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 255 (523)
+....+.|.+|..|+.|.+.-|++.-...+.|..+++|..|.+..|.+...--..|..+.+++.+.+..|.+...
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd----- 203 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD----- 203 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----
Confidence 977777899999999999998888877778888999999999999888744444788888888888888864211
Q ss_pred ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecch-hHHHHHhhccccccc
Q 009858 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ-EVKLMKILTIFTTID 334 (523)
Q Consensus 256 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ 334 (523)
.+++.+... +.-+.+. +++........+.... +... ...+......+..--
T Consensus 204 --CnL~wla~~-~a~~~ie-------tsgarc~~p~rl~~~R------------------i~q~~a~kf~c~~esl~s~~ 255 (498)
T KOG4237|consen 204 --CNLPWLADD-LAMNPIE-------TSGARCVSPYRLYYKR------------------INQEDARKFLCSLESLPSRL 255 (498)
T ss_pred --cccchhhhH-Hhhchhh-------cccceecchHHHHHHH------------------hcccchhhhhhhHHhHHHhh
Confidence 112222111 1111110 1111111100000000 0000 000111112222222
Q ss_pred CCCCccCcCcc-hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 335 LSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 335 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
.+.+...+..| ..|..+++|+.|+|++|+++++-+.+|.++..+++|.|..|++...-..+|.++..|+.|+|.+|+++
T Consensus 256 ~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 256 SSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 23333443444 56899999999999999999999999999999999999999999887889999999999999999999
Q ss_pred ccCCCC-CCCCcccCCccCCCCCCCCCCC
Q 009858 414 GRIPEG-NQFATFSSDSYGGNLGLCGFPL 441 (523)
Q Consensus 414 ~~~p~~-~~~~~~~~~~~~gn~~lc~~~~ 441 (523)
...|.. .....+..+.+-+||+.|.+.+
T Consensus 336 ~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 336 TVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred EEecccccccceeeeeehccCcccCccch
Confidence 887764 3344566777889999987743
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=6.1e-21 Score=200.17 Aligned_cols=247 Identities=24% Similarity=0.387 Sum_probs=185.8
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
.+...|+++++.++..+....++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcC
Confidence 46788999998888654445778999999999888 4555543 58999999999988 7887654 3799999999
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.+... |
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-P 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-C
Confidence 9988 5666554 47899999999887 5676553 589999999998874 554432 4688889999888753 3
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (523)
... .++|+.|++++|.++ .+|..+ .++|+.
T Consensus 321 ~~l----~~sL~~L~Ls~N~Lt-~LP~~l---------------------------------------------~~sL~~ 350 (754)
T PRK15370 321 ETL----PPGLKTLEAGENALT-SLPASL---------------------------------------------PPELQV 350 (754)
T ss_pred ccc----cccceeccccCCccc-cCChhh---------------------------------------------cCcccE
Confidence 222 368889999998887 455321 357888
Q ss_pred ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhh----cCCCCCCeEECC
Q 009858 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPREL----TRLTFLAVLNLS 408 (523)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls 408 (523)
|++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. ..|+.|++++|++. .+|..+ ..++.+..+++.
T Consensus 351 L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 351 LDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred EECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEee
Confidence 999999988 5676553 68999999999988 5666554 46899999999988 444433 445788999999
Q ss_pred CCcCc
Q 009858 409 RNKLE 413 (523)
Q Consensus 409 ~N~l~ 413 (523)
+|+++
T Consensus 424 ~Npls 428 (754)
T PRK15370 424 YNPFS 428 (754)
T ss_pred CCCcc
Confidence 99986
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.8e-20 Score=193.99 Aligned_cols=256 Identities=23% Similarity=0.314 Sum_probs=192.9
Q ss_pred CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858 114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN 193 (523)
Q Consensus 114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (523)
..-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++ .+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCc---ccccceee
Confidence 45678999999998 5777664 48999999999999 78853 348999999999999 45643 46899999
Q ss_pred CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccC
Q 009858 194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF 273 (523)
Q Consensus 194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 273 (523)
+++|.+. .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|.+.+. |.. ..+|+.|++++|.+
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l-----p~~L~~L~Ls~N~L 334 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL-----PSELCKLWAYNNQL 334 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC-----cccccccccccCcc
Confidence 9999987 45543 3678899999999984 554 347899999999998764 322 35788999999999
Q ss_pred CCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCccc
Q 009858 274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHS 353 (523)
Q Consensus 274 ~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 353 (523)
+ .+|.. ...|+.|+++++..... + ...++|+.|++++|.+. .+|.. +.+
T Consensus 335 ~-~LP~l----p~~Lq~LdLS~N~Ls~L--P--------------------~lp~~L~~L~Ls~N~L~-~LP~l---~~~ 383 (788)
T PRK15387 335 T-SLPTL----PSGLQELSVSDNQLASL--P--------------------TLPSELYKLWAYNNRLT-SLPAL---PSG 383 (788)
T ss_pred c-ccccc----ccccceEecCCCccCCC--C--------------------CCCcccceehhhccccc-cCccc---ccc
Confidence 7 56631 24677888776643321 1 01356888999999998 56653 357
Q ss_pred CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCC
Q 009858 354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGG 432 (523)
Q Consensus 354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~g 432 (523)
|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|..+ .+|+.|++++|+++ .+|.. ..+..+....+.+
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 999999999998 46653 3689999999999985 55433 46888999999998 67753 3455666677777
Q ss_pred CCC
Q 009858 433 NLG 435 (523)
Q Consensus 433 n~~ 435 (523)
|+.
T Consensus 455 N~L 457 (788)
T PRK15387 455 NPL 457 (788)
T ss_pred CCC
Confidence 764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.8e-20 Score=196.68 Aligned_cols=227 Identities=26% Similarity=0.420 Sum_probs=180.2
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
++++.|+|++|.++..+....++|+.|++++|.++ .+|..+. .+|+.|+|++|++. .+|..+. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcC
Confidence 58999999999999765555789999999999998 4566553 47999999999998 8898764 3799999999
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
|+++ .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.+.+ +|
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LP 341 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CC
Confidence 9999 5677664 48999999999998 4565443 579999999999984 55544 3689999999999876 34
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (523)
... .++|+.|++++|.++ .+|..+ .+.|+.
T Consensus 342 ~~l----~~sL~~L~Ls~N~L~-~LP~~l---------------------------------------------p~~L~~ 371 (754)
T PRK15370 342 ASL----PPELQVLDVSKNQIT-VLPETL---------------------------------------------PPTITT 371 (754)
T ss_pred hhh----cCcccEEECCCCCCC-cCChhh---------------------------------------------cCCcCE
Confidence 332 479999999999987 566432 356888
Q ss_pred ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCcc----ccCCCCCCEEeCCCCcCCC
Q 009858 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS----LGDLTDLESLDLSSNVLDG 390 (523)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~ 390 (523)
|+|++|.++ .+|..+. .+|+.|++++|++. .+|.. +..++.+..|++.+|.++.
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 999999998 5665543 47899999999988 45543 3445888999999999873
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.6e-20 Score=181.67 Aligned_cols=260 Identities=21% Similarity=0.215 Sum_probs=124.8
Q ss_pred CCCCcEEEccCCcCCCc----CchhhhCCCCcCEEEccCCcCCc------cChhhHhhcccCCcEEEccCCcccccCCCC
Q 009858 113 SSNMRVFLISNNKFIGE----IPRLICNTSTIEILDLSNNSLSG------TIPECIGNFSKSLRVLDLRKNRFHGTIPET 182 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~ 182 (523)
+.+|+.|+++++.++.. ++..+...+.|++|+++++.+.+ .++..+..+. +|++|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC-GLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC-ceeEEEccCCCCChhHHHH
Confidence 44455566665555322 23334445556666666655541 1233444443 5666666666555333333
Q ss_pred CCCCCC---CCEEECcCCCCCC----CCCccccCC-CCCcEEECCCCcCCCC----chHhhhcCCCCCeEEeccccccCc
Q 009858 183 FPKGNN---LTTLNFNGNELVG----SVPRSLLNC-ANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 183 ~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 333332 6666666665542 112233344 5666666666665532 223344455566666666655431
Q ss_pred CCCcc--ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc
Q 009858 251 LRDYE--ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328 (523)
Q Consensus 251 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (523)
..... .....++|+.|++++|.+.+.....+ ...+..++
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------------------------------~~~~~~~~ 221 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASAL---------------------------------------AETLASLK 221 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHH---------------------------------------HHHhcccC
Confidence 10000 01223456666666665542111110 01112245
Q ss_pred ccccccCCCCccCcCcchhhc-----CcccCCeeeCcCCcccc----cCCccccCCCCCCEEeCCCCcCCCc----CChh
Q 009858 329 IFTTIDLSKNSFHGEIPELMG-----KLHSLRLLNLSQNILSG----NIPSSLGDLTDLESLDLSSNVLDGV----IPRE 395 (523)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 395 (523)
+|++|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 566666666666542222211 12566666666666652 2223344456677777777766643 3333
Q ss_pred hcCC-CCCCeEECCCCcC
Q 009858 396 LTRL-TFLAVLNLSRNKL 412 (523)
Q Consensus 396 l~~l-~~L~~L~Ls~N~l 412 (523)
+... +.|+++++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 3334 5666666666653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.9e-19 Score=174.33 Aligned_cols=258 Identities=24% Similarity=0.275 Sum_probs=177.3
Q ss_pred EEEccCCcCC-CcCchhhhCCCCcCEEEccCCcCCcc----ChhhHhhcccCCcEEEccCCcccc------cCCCCCCCC
Q 009858 118 VFLISNNKFI-GEIPRLICNTSTIEILDLSNNSLSGT----IPECIGNFSKSLRVLDLRKNRFHG------TIPETFPKG 186 (523)
Q Consensus 118 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~~L~~L~L~~n~l~~------~~p~~~~~l 186 (523)
.|+|..+.+. ......+..+.+|+.|+++++.+++. ++..+...+ +|++|+++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3566666665 33455667778899999999998633 444555554 69999999887762 233456667
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCC---CcEEECCCCcCCC----CchHhhhcC-CCCCeEEeccccccCcCCCc--cc
Q 009858 187 NNLTTLNFNGNELVGSVPRSLLNCAN---LQVLDLGNNKMKD----TFPHWLGTL-RELQVLILRSNKFYGHLRDY--EA 256 (523)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~--~~ 256 (523)
++|++|++++|.+....+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+.+..... ..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 88999999998887655555555554 9999999988773 233445566 88899999988876422111 11
Q ss_pred cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCC
Q 009858 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLS 336 (523)
Q Consensus 257 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 336 (523)
...+++|++|++++|.+.+.....+. ..+...++|+.|+++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~---------------------------------------~~l~~~~~L~~L~L~ 201 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALA---------------------------------------EGLKANCNLEVLDLN 201 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHH---------------------------------------HHHHhCCCCCEEecc
Confidence 23456888888888887642111111 111224689999999
Q ss_pred CCccCcC----cchhhcCcccCCeeeCcCCcccccCCcccc-----CCCCCCEEeCCCCcCCC----cCChhhcCCCCCC
Q 009858 337 KNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSLG-----DLTDLESLDLSSNVLDG----VIPRELTRLTFLA 403 (523)
Q Consensus 337 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~ 403 (523)
+|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..++.|+
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 9998744 334566788999999999998863222222 24799999999999973 2345566778999
Q ss_pred eEECCCCcCccc
Q 009858 404 VLNLSRNKLEGR 415 (523)
Q Consensus 404 ~L~Ls~N~l~~~ 415 (523)
++++++|.++..
T Consensus 282 ~l~l~~N~l~~~ 293 (319)
T cd00116 282 ELDLRGNKFGEE 293 (319)
T ss_pred EEECCCCCCcHH
Confidence 999999999843
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-19 Score=148.43 Aligned_cols=162 Identities=33% Similarity=0.602 Sum_probs=107.1
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (523)
+...|.|++|+++ ..|..++.+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.|++.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 4555555555555 44445555555566666555554 45555666666666666666554 455555555555555555
Q ss_pred cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323 (523)
Q Consensus 244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (523)
.|.+.+. .+|..+|.
T Consensus 111 ynnl~e~-------------------------~lpgnff~---------------------------------------- 125 (264)
T KOG0617|consen 111 YNNLNEN-------------------------SLPGNFFY---------------------------------------- 125 (264)
T ss_pred ccccccc-------------------------cCCcchhH----------------------------------------
Confidence 5543211 23333332
Q ss_pred HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCC
Q 009858 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL 399 (523)
Q Consensus 324 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 399 (523)
+..|+.|+|++|.+. .+|..++.+++|+.|.+..|.+. .+|..++.++.|++|++.+|+++ .+|..++++
T Consensus 126 ---m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 126 ---MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred ---HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 677888888888887 78888899999999999999888 78888899999999999999988 455555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=3.5e-19 Score=145.99 Aligned_cols=159 Identities=28% Similarity=0.449 Sum_probs=134.5
Q ss_pred CCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL 168 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L 168 (523)
.+.+++.|.||+|.++..+|.. +.+|+.|++++|++. .+|..++.+++|+.|++.-|++. .+|..|+.++ .|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhhhh
Confidence 3588899999999998887766 889999999999887 67778888999999999988887 8899999887 79999
Q ss_pred EccCCccc-ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 169 DLRKNRFH-GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 169 ~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
||++|.+. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99988776 467888888888899999999886 78888889999999999988887 6888889999999999999887
Q ss_pred cCcCCCc
Q 009858 248 YGHLRDY 254 (523)
Q Consensus 248 ~~~~~~~ 254 (523)
+-..|+.
T Consensus 186 ~vlppel 192 (264)
T KOG0617|consen 186 TVLPPEL 192 (264)
T ss_pred eecChhh
Confidence 6555443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.67 E-value=3.1e-17 Score=175.06 Aligned_cols=189 Identities=21% Similarity=0.332 Sum_probs=102.9
Q ss_pred ccccccchhhHhhhhhhhhcccchhhHHHHhhhhhHHHHHHHhhhhhcCCccccc--cccCCCccchhhhhhhccccccC
Q 009858 3 KRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVH--GLQSHPRNTLKDYASAAEFEASD 80 (523)
Q Consensus 3 ~~~~eLi~r~~~q~~~~~~~~~~~~~~hdl~~~l~~~~~~~~~l~~l~~~~c~~~--~~~~~~~~~~~~~~~~~~l~~~~ 80 (523)
.|+.|||.|++++..+......+|+ |||+|+|+|..++.-..-+.-+ .|... +..+
T Consensus 458 ~~i~~LV~~~Ll~~~~~~~~~~~~k-mHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~------------------- 515 (889)
T KOG4658|consen 458 DYIEELVRASLLIEERDEGRKETVK-MHDVVREMALWIASDFGKQEEN--QIVSDGVGLSE------------------- 515 (889)
T ss_pred HHHHHHHHHHHHhhcccccceeEEE-eeHHHHHHHHHHhccccccccc--eEEECCcCccc-------------------
Confidence 4688999999999987666678888 9999999999888411110000 11100 1111
Q ss_pred CCcccCCCCCCCCCccEEEccCCCCccCCCCC-CCCCcEEEccCCc--CCCcCchhhhCCCCcCEEEccCCcCCccChhh
Q 009858 81 GPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNK--FIGEIPRLICNTSTIEILDLSNNSLSGTIPEC 157 (523)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 157 (523)
.|.. ..+...+.+.+-+|.+....-.. .+.|+.|-+.+|. +....++.|..++.|++|||++|.--+.+|+.
T Consensus 516 ~~~~-----~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 516 IPQV-----KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cccc-----cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 1111 11244555555555543322222 4455555555554 33333334555566666666655433456666
Q ss_pred HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858 158 IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN 220 (523)
Q Consensus 158 l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 220 (523)
++.+. +|++|+++++.+. .+|..+.+|..|.+|++..+.-...+|.....|.+|++|.+..
T Consensus 591 I~~Li-~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 591 IGELV-HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred Hhhhh-hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66555 5666666666555 5555555566666666655544434444444556666655544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=4.2e-15 Score=155.81 Aligned_cols=118 Identities=42% Similarity=0.691 Sum_probs=105.4
Q ss_pred ccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408 (523)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 408 (523)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCC--CCCcccCCccCCCCCCCCCCCCCCCC
Q 009858 409 RNKLEGRIPEGN--QFATFSSDSYGGNLGLCGFPLSKNCS 446 (523)
Q Consensus 409 ~N~l~~~~p~~~--~~~~~~~~~~~gn~~lc~~~~~~~c~ 446 (523)
+|+++|.+|... .+.......+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999742 12234456789999999987655663
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=6.8e-14 Score=135.60 Aligned_cols=155 Identities=30% Similarity=0.429 Sum_probs=110.6
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
+.--...|++.|++. .+|..++.+-.|+.+.|+.|.+. .+|..++++. .|.+|+|+.|+++ .+|..++.++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 444456677777776 56666777777888888888887 7888888887 7888888888887 6777776665 7888
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCcc
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 272 (523)
-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++....++.. -=.|..||++.|+
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~----~LpLi~lDfScNk 222 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC----SLPLIRLDFSCNK 222 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh----CCceeeeecccCc
Confidence 88888886 67777777788888888888876 577778888888888888777654333322 1134555555555
Q ss_pred CCCCCch
Q 009858 273 FTGSLPA 279 (523)
Q Consensus 273 l~~~~p~ 279 (523)
+. .+|.
T Consensus 223 is-~iPv 228 (722)
T KOG0532|consen 223 IS-YLPV 228 (722)
T ss_pred ee-ecch
Confidence 54 4443
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.28 E-value=1.8e-11 Score=128.56 Aligned_cols=92 Identities=40% Similarity=0.591 Sum_probs=83.9
Q ss_pred hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCC-CCCCeE
Q 009858 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL-TFLAVL 405 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L 405 (523)
+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++.+|..+..+ ..+..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6889999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred ECCCCcCcccCCC
Q 009858 406 NLSRNKLEGRIPE 418 (523)
Q Consensus 406 ~Ls~N~l~~~~p~ 418 (523)
++.+|+..+..|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999987765553
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=1.4e-11 Score=123.67 Aligned_cols=101 Identities=34% Similarity=0.446 Sum_probs=49.8
Q ss_pred EEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCC-CCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858 142 ILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN-NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN 220 (523)
Q Consensus 142 ~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 220 (523)
.+++..+.+. ..+..+..+. .++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4555555553 2233333443 4666666666665 3333344442 5566666666554 3334455555555555555
Q ss_pred CcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 221 NKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
|++. .+|...+..++|+.|++++|.+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCcc
Confidence 5554 2333333444444444444444
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.9e-12 Score=121.99 Aligned_cols=216 Identities=19% Similarity=0.141 Sum_probs=151.2
Q ss_pred hhhhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCC---
Q 009858 34 SSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVP--- 110 (523)
Q Consensus 34 ~~l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--- 110 (523)
..++...+.+.+|+.+.+++|........ .-...+++++.||||+|-+....+
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~------------------------~~~k~~~~v~~LdLS~NL~~nw~~v~~ 166 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIE------------------------EYSKILPNVRDLDLSRNLFHNWFPVLK 166 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchh------------------------hhhhhCCcceeecchhhhHHhHHHHHH
Confidence 45566777888888888888875431110 112246899999999998876444
Q ss_pred --CCCCCCcEEEccCCcCCCcCchh-hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCC
Q 009858 111 --APSSNMRVFLISNNKFIGEIPRL-ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN 187 (523)
Q Consensus 111 --~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~ 187 (523)
+.+++|+.|+++.|++..-.... -..+++|+.|.|+.|.++...-..+....++|+.|+|..|...........-+.
T Consensus 167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ 246 (505)
T ss_pred HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence 33999999999999886322211 225789999999999998544344433335899999999964434445556678
Q ss_pred CCCEEECcCCCCCCCCC--ccccCCCCCcEEECCCCcCCCC-chHh-----hhcCCCCCeEEeccccccCcCCCcccccc
Q 009858 188 NLTTLNFNGNELVGSVP--RSLLNCANLQVLDLGNNKMKDT-FPHW-----LGTLRELQVLILRSNKFYGHLRDYEADYY 259 (523)
Q Consensus 188 ~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 259 (523)
.|+.|+|++|++.. .+ .....++.|+.|+++.+.+... .|+. ...+++|+.|++..|++.+. +..-....
T Consensus 247 ~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~ 324 (505)
T KOG3207|consen 247 TLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-RSLNHLRT 324 (505)
T ss_pred HHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-cccchhhc
Confidence 89999999998863 33 3467889999999999988753 2332 34578899999999987432 23333355
Q ss_pred CCCCcEEeccCccCCC
Q 009858 260 FSKLRILDLSNNNFTG 275 (523)
Q Consensus 260 l~~L~~L~l~~n~l~~ 275 (523)
+++|+.|.+..|.++.
T Consensus 325 l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhhcccccccc
Confidence 7788888877777753
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=8.3e-13 Score=128.19 Aligned_cols=172 Identities=27% Similarity=0.395 Sum_probs=133.7
Q ss_pred CCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
+......||+.|.+...+... +-.|+.+.+..|.+. .+|.+++++..|.+|||+.|+++ .+|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEE
Confidence 355567788888887554443 677888888888877 67778888888888888888888 8888888885 88888
Q ss_pred ccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858 170 LRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..+ .|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 8888888 77778888888888888888887 67777888888888888888876 466666643 5778888888775
Q ss_pred cCCCccccccCCCCcEEeccCccCC
Q 009858 250 HLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
.+|..+ ..|+.|++|-|.+|.+.
T Consensus 225 ~iPv~f--r~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDF--RKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhh--hhhhhheeeeeccCCCC
Confidence 445544 66788888888888876
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4.8e-11 Score=119.84 Aligned_cols=197 Identities=35% Similarity=0.502 Sum_probs=105.8
Q ss_pred EEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCC-CCcEEECCCCcCCCCchHhhhcCCCCCeEEeccc
Q 009858 167 VLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA-NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245 (523)
Q Consensus 167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (523)
.+++..+.+. .....+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555553 12222334455666666666665 3444444443 6666666666665 34445666666666666666
Q ss_pred cccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHH
Q 009858 246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325 (523)
Q Consensus 246 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (523)
++....+.. ...++|+.|++++|.+. .+|... .
T Consensus 174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-------------------------------------------~ 206 (394)
T COG4886 174 DLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-------------------------------------------E 206 (394)
T ss_pred hhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-------------------------------------------h
Confidence 655433322 13556666666666665 444321 0
Q ss_pred hhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405 (523)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 405 (523)
.+..|+++.+++|.+. ..+..+..+.++..|.+.+|++. ..+..++.+++++.|++++|.++.... +..+.+++.|
T Consensus 207 ~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L 282 (394)
T COG4886 207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL 282 (394)
T ss_pred hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEE
Confidence 0233555566665433 34444555555666666666555 234455556666666666666664332 5555666666
Q ss_pred ECCCCcCcccCC
Q 009858 406 NLSRNKLEGRIP 417 (523)
Q Consensus 406 ~Ls~N~l~~~~p 417 (523)
++++|.++...|
T Consensus 283 ~~s~n~~~~~~~ 294 (394)
T COG4886 283 DLSGNSLSNALP 294 (394)
T ss_pred eccCccccccch
Confidence 666666654444
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=1.9e-11 Score=131.18 Aligned_cols=280 Identities=22% Similarity=0.162 Sum_probs=173.3
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc--CCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS--LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT 190 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (523)
....|.+.+.+|.+. .++... .++.|++|-+.+|. +. .++..++...+.|++|||++|.-.+.+|..++.|.+|+
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 678899999998876 333333 35589999999996 55 66666555334899999999877679999999999999
Q ss_pred EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270 (523)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 270 (523)
+|+++++.+. .+|..+.++++|.+|++..+.....+|.....+++|++|.+..-..............+.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999998 899999999999999999988766678888889999999997654221111111123445555555432
Q ss_pred ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK 350 (523)
Q Consensus 271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 350 (523)
... .+-.. +..+..|......-... . ............+.+|+.|.+.++.+.+....+...
T Consensus 678 ~s~--~~~e~-l~~~~~L~~~~~~l~~~---~------------~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~ 739 (889)
T KOG4658|consen 678 SSV--LLLED-LLGMTRLRSLLQSLSIE---G------------CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES 739 (889)
T ss_pred chh--HhHhh-hhhhHHHHHHhHhhhhc---c------------cccceeecccccccCcceEEEEcCCCchhhcccccc
Confidence 221 00001 12222222211110000 0 000000111223667777777777765332222111
Q ss_pred ------cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc
Q 009858 351 ------LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR 415 (523)
Q Consensus 351 ------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 415 (523)
++++..+.+.+|... ..+.+.--.++|+.|.+..+...+.+.+....+..++.+-+..+.+.+.
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred cchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 234444444444333 2233333457888888888877777666666666676666666665543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=5e-11 Score=102.72 Aligned_cols=107 Identities=36% Similarity=0.455 Sum_probs=27.0
Q ss_pred CCCCcCEEEccCCcCCccChhhHh-hcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccc-cCCCCC
Q 009858 136 NTSTIEILDLSNNSLSGTIPECIG-NFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL-LNCANL 213 (523)
Q Consensus 136 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L 213 (523)
+..++++|+|.+|.|+ .+ +.++ .+. +|+.|++++|.++.. . .+..++.|++|++++|.++.. ...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~-~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLD-KLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-T-T--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccc-cc-cchhhhhc-CCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 3445566666666665 33 2333 233 566666666666632 2 355566666666666666532 2223 345666
Q ss_pred cEEECCCCcCCCC-chHhhhcCCCCCeEEecccccc
Q 009858 214 QVLDLGNNKMKDT-FPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 214 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
++|++++|++... .-..+..+++|+.|++.+|++.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666665432 1133445555666666655554
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=1.1e-11 Score=113.67 Aligned_cols=90 Identities=24% Similarity=0.332 Sum_probs=58.9
Q ss_pred HHhhcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCcccccCCccc-----cCCCCCCEEeCCCCcCCCc---
Q 009858 324 MKILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSL-----GDLTDLESLDLSSNVLDGV--- 391 (523)
Q Consensus 324 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~--- 391 (523)
+..+++|+.|||.+|.++.. +...+..+++|+.|++++|.+......+| ...|+|+.|.+.+|.++..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 33467777777777776642 23445666778888888887765433222 2357888888888887642
Q ss_pred -CChhhcCCCCCCeEECCCCcCc
Q 009858 392 -IPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 392 -~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
+...+...+.|..|+|++|.+.
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhcchhhHHhcCCccccc
Confidence 2234455778888888888883
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.9e-11 Score=113.22 Aligned_cols=206 Identities=23% Similarity=0.229 Sum_probs=109.5
Q ss_pred CCcEEEccCCcccccCC-CCCCCCCCCCEEECcCCCCCCCC--CccccCCCCCcEEECCCCcCCCCchHhh-hcCCCCCe
Q 009858 164 SLRVLDLRKNRFHGTIP-ETFPKGNNLTTLNFNGNELVGSV--PRSLLNCANLQVLDLGNNKMKDTFPHWL-GTLRELQV 239 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~ 239 (523)
.|+...|.++....... .....+++++.|+|++|-+.... ......+++|+.|+++.|++........ ..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 56666666665552111 23445566666666666554211 1223445666666666665542211111 13445555
Q ss_pred EEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecch
Q 009858 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319 (523)
Q Consensus 240 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (523)
|.++.|.++..--.+ ....+|+|+.|++.+|......
T Consensus 202 L~l~~CGls~k~V~~-~~~~fPsl~~L~L~~N~~~~~~------------------------------------------ 238 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQW-ILLTFPSLEVLYLEANEIILIK------------------------------------------ 238 (505)
T ss_pred EEeccCCCCHHHHHH-HHHhCCcHHHhhhhccccccee------------------------------------------
Confidence 555555543111001 1123455555555555311000
Q ss_pred hHHHHHhhcccccccCCCCccCcCcc--hhhcCcccCCeeeCcCCccccc-CCcc-----ccCCCCCCEEeCCCCcCCCc
Q 009858 320 EVKLMKILTIFTTIDLSKNSFHGEIP--ELMGKLHSLRLLNLSQNILSGN-IPSS-----LGDLTDLESLDLSSNVLDGV 391 (523)
Q Consensus 320 ~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~Ls~n~l~~~ 391 (523)
......+..|+.|||++|++- ..+ ...+.++.|+.|+++.|.+... .|+. ...+++|+.|+++.|++.+.
T Consensus 239 -~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 239 -ATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred -cchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 000122567888888888776 333 3456778888888888887752 2332 24467888888888888532
Q ss_pred -CChhhcCCCCCCeEECCCCcCcc
Q 009858 392 -IPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 392 -~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
--..+..+++|+.|.+..|+++.
T Consensus 317 ~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 317 RSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccchhhccchhhhhhcccccccc
Confidence 11234556777888888888763
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-11 Score=111.92 Aligned_cols=249 Identities=22% Similarity=0.254 Sum_probs=135.0
Q ss_pred CCCCccEEEccCCCCccCCC-------CCCCCCcEEEccCCc---CCCcCch-------hhhCCCCcCEEEccCCcCCcc
Q 009858 91 PWKNLEYLDLRSNLLQGPVP-------APSSNMRVFLISNNK---FIGEIPR-------LICNTSTIEILDLSNNSLSGT 153 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~-------~~~~~L~~L~L~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~ 153 (523)
++..++.++||+|.+..... ...++|+.-++++-- ....+|+ ++..+++|++||||+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45788888888888753221 114567777666531 1222332 334456777777777776655
Q ss_pred ChhhHhhcc---cCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC----
Q 009858 154 IPECIGNFS---KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT---- 226 (523)
Q Consensus 154 ~p~~l~~l~---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---- 226 (523)
.+..+..+. ..|++|.|.+|.+.-.-...++. .|..|. .+ .-..+-++|+++..+.|++...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHH
Confidence 444444322 14666666666554111111110 011111 00 1123346677777777766432
Q ss_pred chHhhhcCCCCCeEEeccccccCcCC--CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccC
Q 009858 227 FPHWLGTLRELQVLILRSNKFYGHLR--DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304 (523)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~ 304 (523)
+...|...+.|+.+.+..|.+...-- ...++..+++|+.|||.+|.++..-...+-
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La---------------------- 234 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA---------------------- 234 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH----------------------
Confidence 23445566777777777776532111 112335677777888777776522111110
Q ss_pred ccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhh-----cCcccCCeeeCcCCccccc----CCccccCC
Q 009858 305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-----GKLHSLRLLNLSQNILSGN----IPSSLGDL 375 (523)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~~~~l 375 (523)
..++.+++|+.|++++|.+...-...+ ...++|+.|.+.+|.++.. +-..+...
T Consensus 235 -----------------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 235 -----------------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred -----------------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 112225677777777777765433222 2367888888888887642 22334557
Q ss_pred CCCCEEeCCCCcCC
Q 009858 376 TDLESLDLSSNVLD 389 (523)
Q Consensus 376 ~~L~~L~Ls~n~l~ 389 (523)
+.|+.|+|++|.+.
T Consensus 298 ~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 298 PDLEKLNLNGNRLG 311 (382)
T ss_pred hhhHHhcCCccccc
Confidence 88888899988883
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.6e-11 Score=110.32 Aligned_cols=86 Identities=34% Similarity=0.413 Sum_probs=62.5
Q ss_pred hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcC-ChhhcCCCCCCeE
Q 009858 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI-PRELTRLTFLAVL 405 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L 405 (523)
+++|+.||||+|.++ .+..|-..+-+.+.|.|++|.+.. + ..++.+-+|..||+++|+|.... ...++++|-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 566777777777776 566666677778888888887763 2 34677778888888888886432 2457788888888
Q ss_pred ECCCCcCccc
Q 009858 406 NLSRNKLEGR 415 (523)
Q Consensus 406 ~Ls~N~l~~~ 415 (523)
.|.+|++.+.
T Consensus 405 ~L~~NPl~~~ 414 (490)
T KOG1259|consen 405 RLTGNPLAGS 414 (490)
T ss_pred hhcCCCcccc
Confidence 8888888743
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=7.5e-10 Score=95.46 Aligned_cols=140 Identities=25% Similarity=0.339 Sum_probs=54.8
Q ss_pred CCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCC-CCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC
Q 009858 147 NNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP-KGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD 225 (523)
Q Consensus 147 ~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (523)
.+.|. ..|... +.. .+++|+|++|.|+.+ +.++ .+.+|+.|++++|.++. + ..+..+++|++|++++|+++.
T Consensus 6 ~~~i~-~~~~~~-n~~-~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 6 ANMIE-QIAQYN-NPV-KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S
T ss_pred ccccc-cccccc-ccc-ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc
Confidence 33443 444433 333 699999999999943 2455 57899999999999984 3 358889999999999999985
Q ss_pred CchHhh-hcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCC--chHHHhcccccccccccc
Q 009858 226 TFPHWL-GTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSL--PAMFFKNMKAMTDIGEAA 295 (523)
Q Consensus 226 ~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~l~~~~ 295 (523)
. .+.+ ..+++|++|++++|.+... ........+++|+.|++.+|.++..- ....+..+++|+.|+-..
T Consensus 79 i-~~~l~~~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 79 I-SEGLDKNLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred c-ccchHHhCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4 3444 4699999999999998754 34445567999999999999987331 224567788888887653
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=6.5e-11 Score=106.40 Aligned_cols=129 Identities=28% Similarity=0.306 Sum_probs=76.9
Q ss_pred CCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEE
Q 009858 138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLD 217 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 217 (523)
+.|+++|||+|.|+ .+.+++.-.+ .++.|++++|.+..+ . .++.+++|+.|||++|.++ .+.++=.++-+.++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 45666777777766 5666655554 577777777766632 2 2566667777777777665 3334444566666777
Q ss_pred CCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 218 LGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 218 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
|++|.+... ..++.+-+|..|++++|++.. +......+.+|-|+++.+.+|.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCcc
Confidence 777665421 335555666677777776542 222233355666667777777665
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=117.48 Aligned_cols=245 Identities=25% Similarity=0.265 Sum_probs=142.4
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
+..++.+++..|.+.. .-..+..+++|+.|++.+|.|. .+...+..+. +|++|++++|.|+.+. .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhh-cchheecccccccccc--chhhccchhhh
Confidence 4455555555555542 2223556667777777777776 4444355555 6777777777776443 24556667777
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCc
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 271 (523)
++.+|.+.. ...+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.+...... ..+..+..+++..|
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccc
Confidence 777777752 2344556777777777777664332 1 45566666677766655322111 11233333455555
Q ss_pred cCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc--ccccccCCCCccCcCcchhhc
Q 009858 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT--IFTTIDLSKNSFHGEIPELMG 349 (523)
Q Consensus 272 ~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~ 349 (523)
.++..-+.. .+. .|+.+++++|.+. ..+..+.
T Consensus 219 ~i~~~~~l~---------------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~ 252 (414)
T KOG0531|consen 219 KISKLEGLN---------------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLE 252 (414)
T ss_pred cceeccCcc---------------------------------------------cchhHHHHHHhcccCccc-ccccccc
Confidence 444111100 011 3778888888877 4445566
Q ss_pred CcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCc---CCh-hhcCCCCCCeEECCCCcCcccCC
Q 009858 350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV---IPR-ELTRLTFLAVLNLSRNKLEGRIP 417 (523)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~~~-~l~~l~~L~~L~Ls~N~l~~~~p 417 (523)
.+..+..|++.+|.+... ..+...+.+..+....|.+... ... .....+.+..+.+.+|+.....+
T Consensus 253 ~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 777888888888877642 2345556677777777776522 111 14456678888888888775544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=5.5e-10 Score=79.10 Aligned_cols=60 Identities=42% Similarity=0.587 Sum_probs=38.4
Q ss_pred cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 353 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
+|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666666666655555666666666666666666666666666666666666666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=2.2e-10 Score=115.17 Aligned_cols=219 Identities=28% Similarity=0.336 Sum_probs=133.3
Q ss_pred CCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcE
Q 009858 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQV 215 (523)
Q Consensus 136 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 215 (523)
.+..++.+++..|.+. .+-..+..+. +|+.|++.+|++..+ ...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~-~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLK-SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhh-hhhccccccc-ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence 4556666667777776 3334455555 677777777777733 222556677777777777776332 3455666777
Q ss_pred EECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccc
Q 009858 216 LDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAA 295 (523)
Q Consensus 216 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~ 295 (523)
|++++|.+... ..+..++.|+.+++++|.+....+.. ...+.+++.+.+++|.+...-.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~----------------- 203 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEG----------------- 203 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccc-----------------
Confidence 77777776532 23444666777777777665433310 1335566666666665541111
Q ss_pred ccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcc--cCCeeeCcCCcccccCCcccc
Q 009858 296 DENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH--SLRLLNLSQNILSGNIPSSLG 373 (523)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~ 373 (523)
......+..+++..|.++..-+ +..+. +|+.+++++|.+. ..+..+.
T Consensus 204 ----------------------------~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~ 252 (414)
T KOG0531|consen 204 ----------------------------LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE 252 (414)
T ss_pred ----------------------------hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccccccc
Confidence 1112334445777777763322 12222 3889999999888 4445677
Q ss_pred CCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 374 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
.+..+..|++.+|++... ..+...+.+..+....|++.
T Consensus 253 ~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 788899999999988754 33455666777777777765
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.3e-09 Score=77.22 Aligned_cols=61 Identities=34% Similarity=0.499 Sum_probs=56.6
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 388 (523)
|+|++|++++|+++...+.+|..+++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977678999999999999999999988888999999999999999985
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.3e-09 Score=94.84 Aligned_cols=224 Identities=19% Similarity=0.239 Sum_probs=119.1
Q ss_pred CEEEccCCcCCccChhhHhhcc-cCCcEEEccCCccccc-CCCCCCCC-CCCCEEECcCCCCCC-CCCccccCCCCCcEE
Q 009858 141 EILDLSNNSLSGTIPECIGNFS-KSLRVLDLRKNRFHGT-IPETFPKG-NNLTTLNFNGNELVG-SVPRSLLNCANLQVL 216 (523)
Q Consensus 141 ~~L~L~~n~l~~~~p~~l~~l~-~~L~~L~L~~n~l~~~-~p~~~~~l-~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L 216 (523)
+.||+.+-.|. |..++.+. +....+-+....+... +.+.+... ..|++|||++..|+. .+-..++.+.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 45677766655 55555543 1333444443333211 22222222 247888888777653 222345667888888
Q ss_pred ECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccc
Q 009858 217 DLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296 (523)
Q Consensus 217 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~ 296 (523)
.+.++++...+...++.-.+|+.|+++.+.-............++.|..|+++.|.+....-..+.
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V-------------- 281 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV-------------- 281 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH--------------
Confidence 888888887777778888888888888775322211112224566777777777765432211111
Q ss_pred cccccccCccccccceEEEecchhHHHHHhhcccccccCCCCc--cCc-CcchhhcCcccCCeeeCcCCcc-cccCCccc
Q 009858 297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNS--FHG-EIPELMGKLHSLRLLNLSQNIL-SGNIPSSL 372 (523)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~ 372 (523)
...-++|+.|+|+|+. +.. .+..-...+++|.+|||++|.. +...-.+|
T Consensus 282 ---------------------------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 282 ---------------------------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred ---------------------------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 1123455556665542 111 1222234456666666666532 22222344
Q ss_pred cCCCCCCEEeCCCCcCCCcCChh---hcCCCCCCeEECCCC
Q 009858 373 GDLTDLESLDLSSNVLDGVIPRE---LTRLTFLAVLNLSRN 410 (523)
Q Consensus 373 ~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~N 410 (523)
-.++.|++|.++.|.. ++|.. +...|+|.+||+.++
T Consensus 335 ~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 5566666666666653 23333 345566666666544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=1.3e-09 Score=109.28 Aligned_cols=178 Identities=24% Similarity=0.296 Sum_probs=101.6
Q ss_pred CCCCCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCC---cCc---hhhhC---CCCcCEEEccCCcCCccChh
Q 009858 88 KKLPWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIG---EIP---RLICN---TSTIEILDLSNNSLSGTIPE 156 (523)
Q Consensus 88 ~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~---~~~---~~~~~---l~~L~~L~L~~n~l~~~~p~ 156 (523)
.+.+|++|++|.|.++.+....--. -..|+.|... |.+.. .+. ..|++ --.|.+.+.++|.+. .+-.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDE 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHH
Confidence 4567899999999999876421111 2223333221 11110 000 01111 124666677777776 5556
Q ss_pred hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCC
Q 009858 157 CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE 236 (523)
Q Consensus 157 ~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 236 (523)
++.-++ .|+.|+|++|+++... .+..+++|++|||+.|.+....-....++. |+.|++.+|.++.. ..+.++.+
T Consensus 182 SLqll~-ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLP-ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHH-HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 665555 6777777777777432 566777777777777777632222333344 77777777776532 34667777
Q ss_pred CCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 237 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
|+.||+++|-+.+.- +....+.+..|+.|.|.||.+.
T Consensus 256 L~~LDlsyNll~~hs-eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHS-ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcch-hhhHHHHHHHHHHHhhcCCccc
Confidence 777777777665432 2222244566777777777664
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=5.6e-08 Score=87.78 Aligned_cols=82 Identities=24% Similarity=0.250 Sum_probs=50.1
Q ss_pred hcccccccCCCCccCcCc-chhhcCcccCCeeeCcCCcccccC-CccccCCCCCCEEeCCCCcCCCcCCh------hhcC
Q 009858 327 LTIFTTIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNILSGNI-PSSLGDLTDLESLDLSSNVLDGVIPR------ELTR 398 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~------~l~~ 398 (523)
+|++..+-+..|.+.... ...+..++.+..|+|+.|+|.... -+++..++.|..|.+++|.+.+.+.. .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 566666666666654322 233445666677788877776421 24566778888888888877654322 1355
Q ss_pred CCCCCeEECC
Q 009858 399 LTFLAVLNLS 408 (523)
Q Consensus 399 l~~L~~L~Ls 408 (523)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 6777776644
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=2.6e-07 Score=83.52 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=53.0
Q ss_pred CcccCCeeeCcCCccccc-CCccccCCCCCCEEeCCCCcCCCc-CChhhcCCCCCCeEECCCCcCcccCCC
Q 009858 350 KLHSLRLLNLSQNILSGN-IPSSLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 418 (523)
-++++..+.+..|++... ....+..++.+..|+|+.|+|... -.+.+..++.|..|.+++|++...+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 356788888989987642 234566788899999999999753 235678899999999999999866554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=2.2e-08 Score=100.57 Aligned_cols=104 Identities=26% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (523)
.|...+.++|.+. .+..++.-++.|+.|+|++|+++.. ..+..+++|++|||+.|.+.. +|..-..-..|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence 4666677777776 4555666667777777777777632 266777777777777777763 33311112237777777
Q ss_pred cccccCcCCCccccccCCCCcEEeccCccCCC
Q 009858 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTG 275 (523)
Q Consensus 244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (523)
+|.+.... ...++.+|+.||+++|-+.+
T Consensus 241 nN~l~tL~----gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTTLR----GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHhhh----hHHhhhhhhccchhHhhhhc
Confidence 77654321 22456777777777776654
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=3.1e-08 Score=79.03 Aligned_cols=87 Identities=32% Similarity=0.450 Sum_probs=48.6
Q ss_pred cccccccCCCCccCcCcchhh-cCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858 328 TIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN 406 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 406 (523)
..|+..+|++|.+. ..|..| ..++.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34455566666665 333333 33445666666666666 45555666666666666666665 3344454566666666
Q ss_pred CCCCcCcccCCC
Q 009858 407 LSRNKLEGRIPE 418 (523)
Q Consensus 407 Ls~N~l~~~~p~ 418 (523)
..+|.+. .+|.
T Consensus 130 s~~na~~-eid~ 140 (177)
T KOG4579|consen 130 SPENARA-EIDV 140 (177)
T ss_pred CCCCccc-cCcH
Confidence 6666554 3443
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.1e-08 Score=87.13 Aligned_cols=228 Identities=19% Similarity=0.227 Sum_probs=148.3
Q ss_pred cEEEccCCcCCCcCchhhhCC--CCcCEEEccCCcCCcc-ChhhHhhcccCCcEEEccCCcccc-cCCCCCCCCCCCCEE
Q 009858 117 RVFLISNNKFIGEIPRLICNT--STIEILDLSNNSLSGT-IPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTL 192 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~-~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 192 (523)
..+|+.+-.+. |.++..+ .....+.+....+... +.+.+.-....|++|||++..|+. .+...+..+.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 55666655443 3343333 3445555554433211 222222222369999999988873 233345567889999
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCc-CCCC-chHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNK-MKDT-FPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 270 (523)
.+.++++.+.+...+..-.+|+.|+++++. ++.. ..--+.+++.|+.|+++-|.+....-......--++|..|+++|
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 999999988777888889999999999875 3221 12245688999999999998755443222223346788888887
Q ss_pred ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCC-ccCcCcchhhc
Q 009858 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKN-SFHGEIPELMG 349 (523)
Q Consensus 271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~ 349 (523)
+.-. +. ... .......+|+|..||||+| .++......|.
T Consensus 296 ~rrn--l~---~sh-----------------------------------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 296 YRRN--LQ---KSH-----------------------------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hHhh--hh---hhH-----------------------------------HHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 6432 00 000 0112344789999999988 45555556778
Q ss_pred CcccCCeeeCcCCcccccCCc---cccCCCCCCEEeCCCCcCC
Q 009858 350 KLHSLRLLNLSQNILSGNIPS---SLGDLTDLESLDLSSNVLD 389 (523)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~ 389 (523)
.++.|++|.++.|.. ++|. .+...|+|.+|++.++--.
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 899999999999964 4554 4567899999999887543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=1.1e-07 Score=76.00 Aligned_cols=81 Identities=27% Similarity=0.394 Sum_probs=41.3
Q ss_pred cccccCCCCccCcCcchh---hcCcccCCeeeCcCCcccccCCcccc-CCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858 330 FTTIDLSKNSFHGEIPEL---MGKLHSLRLLNLSQNILSGNIPSSLG-DLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405 (523)
Q Consensus 330 L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 405 (523)
+..++|++|.+. .+++. +.....|+..+|++|.+. ..|..|. ..+.++.|+|++|.++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555544 33332 233344455566666655 3333333 2345566666666665 344446666666666
Q ss_pred ECCCCcCc
Q 009858 406 NLSRNKLE 413 (523)
Q Consensus 406 ~Ls~N~l~ 413 (523)
+++.|++.
T Consensus 106 Nl~~N~l~ 113 (177)
T KOG4579|consen 106 NLRFNPLN 113 (177)
T ss_pred ccccCccc
Confidence 66666655
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=1.5e-06 Score=77.74 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=34.3
Q ss_pred CCCCcEEECCCCcCCCCc----hHhhhcCCCCCeEEeccccccCcCCC---ccccccCCCCcEEeccCccCC
Q 009858 210 CANLQVLDLGNNKMKDTF----PHWLGTLRELQVLILRSNKFYGHLRD---YEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 210 l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~l~~L~~L~l~~n~l~ 274 (523)
-|.|+......|++.... ...+.....|+++.+..|.+...--. ......+.+|+.||+..|.++
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 456666666666654211 11233345677777777655321100 112234567777777777665
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=3.5e-07 Score=81.68 Aligned_cols=193 Identities=20% Similarity=0.223 Sum_probs=109.0
Q ss_pred CCCCCCCCEEECcCCCCCCCCCc----cccCCCCCcEEECCCCcCCCCchHhh-------------hcCCCCCeEEeccc
Q 009858 183 FPKGNNLTTLNFNGNELVGSVPR----SLLNCANLQVLDLGNNKMKDTFPHWL-------------GTLRELQVLILRSN 245 (523)
Q Consensus 183 ~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l-------------~~l~~L~~L~l~~n 245 (523)
+.++++|+..+|+.|-+....|. .+++-+.|++|.+++|.+....-.-+ ..-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 44667777777777776655543 34556777788887777642211111 23466777777777
Q ss_pred cccCcCCCccc--cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858 246 KFYGHLRDYEA--DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323 (523)
Q Consensus 246 ~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (523)
++........+ ...-.+|+.+.+.+|.+. |.. ... ....-
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIr---peg----v~~-------------------------------L~~~g 209 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIR---PEG----VTM-------------------------------LAFLG 209 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcC---cch----hHH-------------------------------HHHHH
Confidence 76432221111 111246777777777654 211 000 01111
Q ss_pred HHhhcccccccCCCCccCcCc----chhhcCcccCCeeeCcCCcccccCCcc----cc--CCCCCCEEeCCCCcCCCcCC
Q 009858 324 MKILTIFTTIDLSKNSFHGEI----PELMGKLHSLRLLNLSQNILSGNIPSS----LG--DLTDLESLDLSSNVLDGVIP 393 (523)
Q Consensus 324 ~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~--~l~~L~~L~Ls~n~l~~~~~ 393 (523)
...+.+|+.|||..|.++-.- ...+...+.|+.|.+..|-++...... |. ..|+|..|-..+|...+.+.
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 223678888888888877432 233344566888888888776533221 22 24778888888887654321
Q ss_pred h-----hh--cCCCCCCeEECCCCcCc
Q 009858 394 R-----EL--TRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 394 ~-----~l--~~l~~L~~L~Ls~N~l~ 413 (523)
. .| .++|-|..|.+.+|.+.
T Consensus 290 ~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 290 LDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred eeechhhhhhcccHHHHHHHHccCcch
Confidence 1 11 34666777777777776
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=2e-06 Score=90.56 Aligned_cols=153 Identities=23% Similarity=0.320 Sum_probs=109.9
Q ss_pred CCcCEEEccCCc-CCccChhhHhhcccCCcEEEccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcE
Q 009858 138 STIEILDLSNNS-LSGTIPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQV 215 (523)
Q Consensus 138 ~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 215 (523)
.+|+.||+++.. +....|..++.+.|+|+.|.+++-.+.. ..-....++++|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 689999999875 3446778888888899999999866642 2223355788999999999998743 67889999999
Q ss_pred EECCCCcCCC-CchHhhhcCCCCCeEEeccccccCcCCCc----cccccCCCCcEEeccCccCCCCCchHHHhccccccc
Q 009858 216 LDLGNNKMKD-TFPHWLGTLRELQVLILRSNKFYGHLRDY----EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTD 290 (523)
Q Consensus 216 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 290 (523)
|.+.+=.+.. ..-..+..+++|+.||+|........... .....+|+|+.||.|+..+...+-+.+...-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9888766553 22245678999999999987654332100 112358999999999998886666665555555555
Q ss_pred cc
Q 009858 291 IG 292 (523)
Q Consensus 291 l~ 292 (523)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=3.2e-05 Score=75.33 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=46.3
Q ss_pred HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCC
Q 009858 158 IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL 237 (523)
Q Consensus 158 l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 237 (523)
+..+. ++++|++++|.++ .+| .+ ..+|++|.++++.-...+|+.+ .++|++|++++|.....+| .+|
T Consensus 48 ~~~~~-~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEAR-ASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhc-CCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------ccc
Confidence 44454 7889999988777 455 22 2368888888754444566544 2577888887773222343 245
Q ss_pred CeEEecccc
Q 009858 238 QVLILRSNK 246 (523)
Q Consensus 238 ~~L~l~~n~ 246 (523)
+.|++..+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 666665443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.4e-05 Score=76.19 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=88.2
Q ss_pred CCCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCC-cCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN-SLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+++++.|++++|.++.. |....+|+.|.++++.-...+|+.+ .++|++|++++| .+. .+|. +|+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCccc-CCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccceEEe
Confidence 47899999999988765 4556789999999865545667655 358999999998 554 5553 6888888
Q ss_pred cCCccc--ccCCCCCCCCCCCCEEECcCCCCC--CCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccc
Q 009858 171 RKNRFH--GTIPETFPKGNNLTTLNFNGNELV--GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246 (523)
Q Consensus 171 ~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 246 (523)
+.+... +.+|. +|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+- .+|+.|+++.+.
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 776543 12332 4677777543311 111211 1267999999988765 3443332 578899987763
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.2e-05 Score=51.97 Aligned_cols=36 Identities=36% Similarity=0.598 Sum_probs=18.3
Q ss_pred CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCC
Q 009858 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151 (523)
Q Consensus 115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 151 (523)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 23334555555555555555555
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.9e-05 Score=67.80 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=72.9
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccC-CCCCCCCCCCCE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI-PETFPKGNNLTT 191 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~ 191 (523)
..+...+||++|.+... ..|..++.|.+|.+.+|+|+ .+...+..+.++|..|.|.+|++.... -.-+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 45666777777776522 24667788888888888888 666666666667888888888776211 113556778888
Q ss_pred EECcCCCCCCCCC---ccccCCCCCcEEECCCCc
Q 009858 192 LNFNGNELVGSVP---RSLLNCANLQVLDLGNNK 222 (523)
Q Consensus 192 L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~ 222 (523)
|.+-+|++...-- -.+..+++|+.||.+.-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888887763221 245677888888877644
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.3e-05 Score=51.79 Aligned_cols=36 Identities=36% Similarity=0.624 Sum_probs=19.7
Q ss_pred CcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccc
Q 009858 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH 176 (523)
Q Consensus 139 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~ 176 (523)
+|++|++++|+++ .+|..++.+. +|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~-~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLP-NLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCT-TSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCC-CCCEEEecCCCCC
Confidence 4556666666665 4555555555 5666666666555
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=3.1e-05 Score=66.58 Aligned_cols=129 Identities=24% Similarity=0.270 Sum_probs=84.3
Q ss_pred cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG 219 (523)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (523)
=+.++|.+.++. .+.. ++....+...+||++|.+.. + ..|..++.|.+|.+++|+|+.+-|.--..+++|..|.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345566665554 2222 33333467788888887762 2 357778888888888888886666555557788888888
Q ss_pred CCcCCCCc-hHhhhcCCCCCeEEeccccccCcCC-CccccccCCCCcEEeccCcc
Q 009858 220 NNKMKDTF-PHWLGTLRELQVLILRSNKFYGHLR-DYEADYYFSKLRILDLSNNN 272 (523)
Q Consensus 220 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~ 272 (523)
+|++.... -+-+..++.|++|.+-+|+...... .....+.+|+|+.||...-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88876321 1235677888888888887653321 12233678899999887643
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.1e-05 Score=85.01 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=98.9
Q ss_pred CCccEEEccCCCCccCCC-C----CCCCCcEEEccCCcCCCcC-chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCc
Q 009858 93 KNLEYLDLRSNLLQGPVP-A----PSSNMRVFLISNNKFIGEI-PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLR 166 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~-~----~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~ 166 (523)
.+|+.||+++...-...+ . .+|+|+.|.+++-.+.... .....++++|..||+|+++++ .+ .++..+. +|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lk-nLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLK-NLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccc-cHH
Confidence 688999998866543222 1 1899999999887664332 334567899999999999987 45 7788887 899
Q ss_pred EEEccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCC--C----ccccCCCCCcEEECCCCcCCCCchHhh-hcCCCCC
Q 009858 167 VLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSV--P----RSLLNCANLQVLDLGNNKMKDTFPHWL-GTLRELQ 238 (523)
Q Consensus 167 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~ 238 (523)
.|.+.+=.+.. ..-..+..|++|+.||+|........ . +.-..+|+|+.||.|++.+.+.+-+.+ ...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99888766552 11123557889999999876554221 1 112357899999999888775543333 3455666
Q ss_pred eEEec
Q 009858 239 VLILR 243 (523)
Q Consensus 239 ~L~l~ 243 (523)
.+.+-
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 55543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.66 E-value=3e-06 Score=80.46 Aligned_cols=277 Identities=19% Similarity=0.152 Sum_probs=146.6
Q ss_pred CCccEEEccCCCCccCCCCC-----CCCCcEEEccCCcC-CCcCchhh-hCCCCcCEEEccCC-cCCccChhhHhhcccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAP-----SSNMRVFLISNNKF-IGEIPRLI-CNTSTIEILDLSNN-SLSGTIPECIGNFSKS 164 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~-----~~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~ 164 (523)
..|+.|.+.++.=.+.-+.. +++++.|.+.++.. +...-..+ ..+++|++|++..| .++...-..+..-.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35778888887655444322 78888888877753 22211222 35778888888884 4554444444444447
Q ss_pred CcEEEccCC-ccccc-CCCCCCCCCCCCEEECcCCCCCCCCCccc----cCCCCCcEEECCCCcCCCCchHh--hhcCCC
Q 009858 165 LRVLDLRKN-RFHGT-IPETFPKGNNLTTLNFNGNELVGSVPRSL----LNCANLQVLDLGNNKMKDTFPHW--LGTLRE 236 (523)
Q Consensus 165 L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~ 236 (523)
|++|+++++ .+++- +...+.+...++.+.+.+|.=. .-..+ ..+.-+..+++..|.......-+ -..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 888888887 34431 1112334455666655554211 11111 22334555555554322111111 123556
Q ss_pred CCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEe
Q 009858 237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLII 316 (523)
Q Consensus 237 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (523)
|+.|..+++...+..+.+.-....++|+.|.++++.--+.....
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft------------------------------------ 339 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT------------------------------------ 339 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh------------------------------------
Confidence 67777666654333322222344566777766666421111100
Q ss_pred cchhHHHHHhhcccccccCCCCccCcC--cchhhcCcccCCeeeCcCCcccccC-----CccccCCCCCCEEeCCCCcCC
Q 009858 317 KRQEVKLMKILTIFTTIDLSKNSFHGE--IPELMGKLHSLRLLNLSQNILSGNI-----PSSLGDLTDLESLDLSSNVLD 389 (523)
Q Consensus 317 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~ 389 (523)
..-...+.|+.+++.++..... +...-.+++.|+.|.|++|...... ...-..+..|+.+.|+++..+
T Consensus 340 -----~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 340 -----MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred -----hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 1112256677777777654311 2222345677888888877543211 122245677888888888765
Q ss_pred C-cCChhhcCCCCCCeEECCCCcC
Q 009858 390 G-VIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 390 ~-~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
. ..-+.+..++.|+.+++-++.-
T Consensus 415 ~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 415 TDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hHHHHHHHhhCcccceeeeechhh
Confidence 3 2334456677888888777654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.0004 Score=62.47 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCC--CCCCCCCccccCCCCCcEEECCCCcCC
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGN--ELVGSVPRSLLNCANLQVLDLGNNKMK 224 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (523)
.|+.|++.+..++.. ..|..|++|++|.++.| .+.+.++.-...+++|++|++++|++.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 355555544444421 12344455555555555 333333333333455555555555443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.80 E-value=0.004 Score=51.29 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=3.3
Q ss_pred CCCCccEEEcc
Q 009858 91 PWKNLEYLDLR 101 (523)
Q Consensus 91 ~~~~L~~L~L~ 101 (523)
.+++|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 33344444443
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.80 E-value=8.2e-05 Score=70.94 Aligned_cols=87 Identities=22% Similarity=0.115 Sum_probs=56.6
Q ss_pred hcccccccCCCCc-cCcCcchh-hcCcccCCeeeCcCCccccc--CCccccCCCCCCEEeCCCCcCCCcC-----Chhhc
Q 009858 327 LTIFTTIDLSKNS-FHGEIPEL-MGKLHSLRLLNLSQNILSGN--IPSSLGDLTDLESLDLSSNVLDGVI-----PRELT 397 (523)
Q Consensus 327 ~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~-----~~~l~ 397 (523)
.++|+.+.+++++ ++..--.. -.+.+.|+.+++..+..... +...-.+++.|+.|.|++|.+.... ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 5778888888875 33211111 24568899999998865421 2222346789999999999764332 12224
Q ss_pred CCCCCCeEECCCCcCc
Q 009858 398 RLTFLAVLNLSRNKLE 413 (523)
Q Consensus 398 ~l~~L~~L~Ls~N~l~ 413 (523)
++..|..+.|++++..
T Consensus 399 ~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLI 414 (483)
T ss_pred cccccceeeecCCCCc
Confidence 5678999999999876
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.77 E-value=0.0058 Score=50.36 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=59.4
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh-HhhcccCCcEEEccCCcccccCCCCCCCCCCCCE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC-IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT 191 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 191 (523)
+++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++.. +.... +|+.+.+.. .+.......|...++|+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccc-ccccccccc-cccccccccccccccccc
Confidence 55778888774 455566667888888888888775 55 44443 44443 688888865 444455567777888888
Q ss_pred EECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCC
Q 009858 192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ 238 (523)
Q Consensus 192 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 238 (523)
+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 888765 544445567776 888888775 34434455666666553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0018 Score=58.43 Aligned_cols=92 Identities=22% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCC--cCCCCchHhhhcCCCCCeEEeccccccCcCCCcccc
Q 009858 180 PETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNN--KMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD 257 (523)
Q Consensus 180 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 257 (523)
......+..|+.|++.+..++. -..+..|++|+.|.++.| ++.+.++-....+++|+++++++|++.. +...-..
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl 112 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPL 112 (260)
T ss_pred ccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchh
Confidence 3334445566666666665542 134566778888888888 5555555445556888888888887653 2222233
Q ss_pred ccCCCCcEEeccCccCC
Q 009858 258 YYFSKLRILDLSNNNFT 274 (523)
Q Consensus 258 ~~l~~L~~L~l~~n~l~ 274 (523)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 45677778888777665
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00028 Score=63.81 Aligned_cols=76 Identities=25% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEECCCCcCCCCch-----HhhhcCCCC
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQVLDLGNNKMKDTFP-----HWLGTLREL 237 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L 237 (523)
.|++|.|+-|+|+..-| |..+++|+.|+|..|.|..... ..+.++++|+.|+|..|.-.+..+ ..+.-+++|
T Consensus 42 ~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnL 119 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNL 119 (388)
T ss_pred cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccc
Confidence 45555555555542222 3344455555555554432110 133455555555555554433322 123345555
Q ss_pred CeEE
Q 009858 238 QVLI 241 (523)
Q Consensus 238 ~~L~ 241 (523)
+.||
T Consensus 120 kKLD 123 (388)
T KOG2123|consen 120 KKLD 123 (388)
T ss_pred hhcc
Confidence 5553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00037 Score=63.00 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=42.1
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCc-hHhhhcCCCCCeEEe
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF-PHWLGTLRELQVLIL 242 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l 242 (523)
+.+.|+..+|.+.++. ...+++.|++|.|+-|+|+..- .+..+++|++|+|..|.|...- -..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4556666666665431 2335566666666666665322 3445666666666666554221 122345555555555
Q ss_pred ccccc
Q 009858 243 RSNKF 247 (523)
Q Consensus 243 ~~n~l 247 (523)
..|+-
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 55543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.47 E-value=0.0047 Score=63.77 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=15.4
Q ss_pred CCCCcEEECCCCc-CCCCchHhhhc-CCCCCeEEecccc
Q 009858 210 CANLQVLDLGNNK-MKDTFPHWLGT-LRELQVLILRSNK 246 (523)
Q Consensus 210 l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~ 246 (523)
+++|+.|+++++. ++...-..+.. +++|+.|.+.++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 3445555555544 33222222222 4455555544443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0062 Score=32.60 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=5.3
Q ss_pred CcEEEccCCccc
Q 009858 165 LRVLDLRKNRFH 176 (523)
Q Consensus 165 L~~L~L~~n~l~ 176 (523)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0091 Score=31.94 Aligned_cols=20 Identities=45% Similarity=0.775 Sum_probs=13.7
Q ss_pred CcCEEEccCCcCCccChhhHh
Q 009858 139 TIEILDLSNNSLSGTIPECIG 159 (523)
Q Consensus 139 ~L~~L~L~~n~l~~~~p~~l~ 159 (523)
+|++||+++|+++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777777 6776644
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.03 E-value=0.0069 Score=62.54 Aligned_cols=62 Identities=24% Similarity=0.203 Sum_probs=27.9
Q ss_pred CCCCcEEEccCCc-CCCcCchhhhC-CCCcCEEEccCCc-CCccChhhHhhcccCCcEEEccCCc
Q 009858 113 SSNMRVFLISNNK-FIGEIPRLICN-TSTIEILDLSNNS-LSGTIPECIGNFSKSLRVLDLRKNR 174 (523)
Q Consensus 113 ~~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~L~~n~ 174 (523)
+++|+.|+++.+. ++...-..+.. +++|+.|.+.++. +++.--..+....++|++|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555554 33222222222 4555555555554 3433333333322245555555543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.09 E-value=0.00051 Score=69.58 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=28.7
Q ss_pred cccccCCCCccCcC----cchhhcCc-ccCCeeeCcCCcccccC----CccccCCCCCCEEeCCCCcCCC
Q 009858 330 FTTIDLSKNSFHGE----IPELMGKL-HSLRLLNLSQNILSGNI----PSSLGDLTDLESLDLSSNVLDG 390 (523)
Q Consensus 330 L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~ 390 (523)
+..++++.|.+.+. ....+..+ ..+++++++.|.++... ...+..++.+++|.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 34455555555432 11222333 44555566666555422 2233344556666666665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.05 E-value=0.037 Score=27.42 Aligned_cols=13 Identities=54% Similarity=0.792 Sum_probs=4.5
Q ss_pred CcCEEEccCCcCC
Q 009858 139 TIEILDLSNNSLS 151 (523)
Q Consensus 139 ~L~~L~L~~n~l~ 151 (523)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.79 E-value=0.00071 Score=68.55 Aligned_cols=87 Identities=31% Similarity=0.335 Sum_probs=64.0
Q ss_pred hcccccccCCCCccCcCc----chhhcCccc-CCeeeCcCCccccc----CCccccCC-CCCCEEeCCCCcCCCcC----
Q 009858 327 LTIFTTIDLSKNSFHGEI----PELMGKLHS-LRLLNLSQNILSGN----IPSSLGDL-TDLESLDLSSNVLDGVI---- 392 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~Ls~n~l~~~~---- 392 (523)
..++++|.+++|.++... ...+...++ +..|+++.|.+.+. ....+..+ ..+++++++.|.+++.-
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 567888999998877322 233445555 77799999988753 23345555 77899999999998653
Q ss_pred ChhhcCCCCCCeEECCCCcCc
Q 009858 393 PRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 393 ~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
...+..++.++++.+++|++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 345567789999999999986
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.61 E-value=0.0033 Score=55.54 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=52.7
Q ss_pred hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCC
Q 009858 134 ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL 213 (523)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 213 (523)
+......+.||++.|++. .+-..+.-+. .|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|.++...+.+
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 444555566666666654 4444555554 5666666666666 55666666666666666666654 566666666667
Q ss_pred cEEECCCCcC
Q 009858 214 QVLDLGNNKM 223 (523)
Q Consensus 214 ~~L~L~~n~l 223 (523)
+++++..|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666666653
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.07 E-value=0.15 Score=28.41 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=10.8
Q ss_pred CCCCEEeCCCCcCCCcCChh
Q 009858 376 TDLESLDLSSNVLDGVIPRE 395 (523)
Q Consensus 376 ~~L~~L~Ls~n~l~~~~~~~ 395 (523)
++|++|+|++|++....+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666665443333
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.07 E-value=0.15 Score=28.41 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=10.8
Q ss_pred CCCCEEeCCCCcCCCcCChh
Q 009858 376 TDLESLDLSSNVLDGVIPRE 395 (523)
Q Consensus 376 ~~L~~L~Ls~n~l~~~~~~~ 395 (523)
++|++|+|++|++....+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666665443333
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.92 E-value=0.15 Score=28.34 Aligned_cols=19 Identities=47% Similarity=0.697 Sum_probs=9.7
Q ss_pred CCcCEEEccCCcCCccChhh
Q 009858 138 STIEILDLSNNSLSGTIPEC 157 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~ 157 (523)
++|++|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.92 E-value=0.15 Score=28.34 Aligned_cols=19 Identities=47% Similarity=0.697 Sum_probs=9.7
Q ss_pred CCcCEEEccCCcCCccChhh
Q 009858 138 STIEILDLSNNSLSGTIPEC 157 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~ 157 (523)
++|++|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.25 E-value=0.01 Score=52.62 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=54.6
Q ss_pred hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCC
Q 009858 133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV 200 (523)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 200 (523)
.|.-++.|..||++.|.+. .+|.+++... .++.+++..|..+ ..|.++...++++++++.+|.+.
T Consensus 60 n~s~~t~~~rl~~sknq~~-~~~~d~~q~~-e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIK-FLPKDAKQQR-ETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chHHHHHHHHHhccHhhHh-hChhhHHHHH-HHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 4566777888899999887 8899988887 6888898888887 78889999999999999888764
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=0.031 Score=48.60 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=15.8
Q ss_pred CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc
Q 009858 116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149 (523)
Q Consensus 116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (523)
++.++-++..+...--+.+.+++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3444444444443333344455555555555543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.12 E-value=0.16 Score=27.63 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=7.3
Q ss_pred CCcCEEEccCCcCCcc
Q 009858 138 STIEILDLSNNSLSGT 153 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~~ 153 (523)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555433
No 84
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=82.34 E-value=0.25 Score=39.58 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=9.9
Q ss_pred eeeehhhhhHHHHHHHHHh
Q 009858 473 LMGYVCGTVFGMILGYILL 491 (523)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~ 491 (523)
+++|+.|++++++..++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 3455556666555444433
No 85
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=81.23 E-value=1.7 Score=36.07 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=11.3
Q ss_pred EeeeehhhhhHHHHHHHHHhh
Q 009858 472 VLMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~ 492 (523)
+++|++.|+.+.++++++++.
T Consensus 50 IVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEEecccHHHHHHHHHhh
Confidence 456666666555555444444
No 86
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=79.11 E-value=2.6 Score=37.01 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=7.4
Q ss_pred eEEeeeehhhhhHHH
Q 009858 470 KVVLMGYVCGTVFGM 484 (523)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (523)
.-+++|+++|+++++
T Consensus 37 ~~I~iaiVAG~~tVI 51 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVI 51 (221)
T ss_pred eeeeeeeecchhhhH
Confidence 344555555544443
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=78.54 E-value=3.4 Score=25.65 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=7.6
Q ss_pred EEeeeehhhhhHHHHHH
Q 009858 471 VVLMGYVCGTVFGMILG 487 (523)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (523)
.+.+|++.-+++.+++.
T Consensus 12 aIa~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVL 28 (40)
T ss_pred EEEEEEEechHHHHHHH
Confidence 44455544444444333
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.53 E-value=0.82 Score=40.04 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=19.1
Q ss_pred CCCEEECcCCCCCCCCCccccCCCCCcEEECCCCc
Q 009858 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK 222 (523)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 222 (523)
.++.++-++..|..+--..+.+++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35556666655554444445555555555555554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.89 E-value=17 Score=36.47 Aligned_cols=138 Identities=19% Similarity=0.047 Sum_probs=60.4
Q ss_pred CcCEEEccCCcCCccChhhHhhcc--cCCcEEEccCCcccc---cCCCCCCCCCCCCEEECcCCCCCC----CCC----c
Q 009858 139 TIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHG---TIPETFPKGNNLTTLNFNGNELVG----SVP----R 205 (523)
Q Consensus 139 ~L~~L~L~~n~l~~~~p~~l~~l~--~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~~----~~~----~ 205 (523)
.+.+++++.|.....+|..+.... ..++.++.+...+.- ..+-.++.-++|...+++.|.... +.+ .
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 456667777666655555433221 135555555544431 122223334556666666554321 112 1
Q ss_pred cccCCCCCcEEECCCCcCCCCchHh-hhc-----CCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCc
Q 009858 206 SLLNCANLQVLDLGNNKMKDTFPHW-LGT-----LRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP 278 (523)
Q Consensus 206 ~l~~l~~L~~L~L~~n~l~~~~~~~-l~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 278 (523)
.++.-.++ +|++..+.....-+.. +-. -+.=-.+++..|...+.-. ..+..+-..++.|....|...+...
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v-leaci~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV-LEACIFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch-hhccccceeeeEeeccccccccccc
Confidence 23333455 5666555443221111 110 0111233444443321111 0111122348888888888876554
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.42 E-value=1.8 Score=24.04 Aligned_cols=17 Identities=41% Similarity=0.819 Sum_probs=8.3
Q ss_pred CcCEEEccCCcCCccChh
Q 009858 139 TIEILDLSNNSLSGTIPE 156 (523)
Q Consensus 139 ~L~~L~L~~n~l~~~~p~ 156 (523)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3445555555554 4443
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.75 E-value=3 Score=23.24 Aligned_cols=14 Identities=57% Similarity=0.786 Sum_probs=7.1
Q ss_pred CCCCEEeCCCCcCC
Q 009858 376 TDLESLDLSSNVLD 389 (523)
Q Consensus 376 ~~L~~L~Ls~n~l~ 389 (523)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555553
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.53 E-value=5.2 Score=22.63 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=8.7
Q ss_pred CCCCEEeCCCCcCC
Q 009858 376 TDLESLDLSSNVLD 389 (523)
Q Consensus 376 ~~L~~L~Ls~n~l~ 389 (523)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 93
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=64.23 E-value=2.7 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=15.3
Q ss_pred eeeehhhhhHHHHHHHHHhhcCCcceee
Q 009858 473 LMGYVCGTVFGMILGYILLSTGNPQWIM 500 (523)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 500 (523)
.+++++++++-++++++++..+...||.
T Consensus 10 ~vaIa~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred eEEEEEEEEechHHHHHHHHHHhheEEe
Confidence 5566666666666555555433444443
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=63.69 E-value=7 Score=30.07 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=6.1
Q ss_pred EeeeehhhhhHHH
Q 009858 472 VLMGYVCGTVFGM 484 (523)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (523)
.++|+++++++++
T Consensus 67 aiagi~vg~~~~v 79 (96)
T PTZ00382 67 AIAGISVAVVAVV 79 (96)
T ss_pred cEEEEEeehhhHH
Confidence 3455555544333
No 95
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=61.38 E-value=2.8 Score=28.98 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=0.0
Q ss_pred eeehhhhhHHHHH
Q 009858 474 MGYVCGTVFGMIL 486 (523)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (523)
.|+++|+++++++
T Consensus 16 aG~Vvgll~ailL 28 (64)
T PF01034_consen 16 AGGVVGLLFAILL 28 (64)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.73 E-value=8 Score=39.39 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=36.4
Q ss_pred CCCCcEEEccCCcCCCcC--chhhhCCCCcCEEEccCC--cCCcc-ChhhHhhcccCCcEEEccCCcccc
Q 009858 113 SSNMRVFLISNNKFIGEI--PRLICNTSTIEILDLSNN--SLSGT-IPECIGNFSKSLRVLDLRKNRFHG 177 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n--~l~~~-~p~~l~~l~~~L~~L~L~~n~l~~ 177 (523)
.+.+..++|++|++.... ...-...++|+.|+|++| .+... .-..++.+ -|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l--~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL--PLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC--CHHHeeecCCcccc
Confidence 666777777777765321 111123577888888888 33311 11122233 48888888888764
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.77 E-value=43 Score=33.72 Aligned_cols=86 Identities=21% Similarity=0.132 Sum_probs=47.5
Q ss_pred cccccccCCCCccCcCcchh--hcCcccCCeeeCcCCcccc-cCCccc--------cCCCCCCEEeCCCCcCCCcCCh--
Q 009858 328 TIFTTIDLSKNSFHGEIPEL--MGKLHSLRLLNLSQNILSG-NIPSSL--------GDLTDLESLDLSSNVLDGVIPR-- 394 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~-~~p~~~--------~~l~~L~~L~Ls~n~l~~~~~~-- 394 (523)
..+++|.++.|.+.++.... ...-++.+.+++..-.-.. -++... ..---+..+.++.|.+....-.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 34778888888777654432 2334566666665432210 011101 0112467778888877643322
Q ss_pred -hhcCCCCCCeEECCCCcCc
Q 009858 395 -ELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 395 -~l~~l~~L~~L~Ls~N~l~ 413 (523)
.+.+-+.+..|++++|...
T Consensus 434 n~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred HhhccCcccccccccCCCcc
Confidence 2344567888888888764
No 98
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.07 E-value=9.9 Score=26.08 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=14.4
Q ss_pred ccceEEeeeehhhhhHHHHHHHHHhh
Q 009858 467 FGWKVVLMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
.+...|++.++.++++.++++-++++
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY 35 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLY 35 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHH
Confidence 33344555556666666666655554
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.98 E-value=6.9 Score=39.83 Aligned_cols=64 Identities=28% Similarity=0.232 Sum_probs=41.7
Q ss_pred hhcccccccCCCCccCcCc--chhhcCcccCCeeeCcCC--cccccCCccccC--CCCCCEEeCCCCcCCCc
Q 009858 326 ILTIFTTIDLSKNSFHGEI--PELMGKLHSLRLLNLSQN--ILSGNIPSSLGD--LTDLESLDLSSNVLDGV 391 (523)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~--l~~L~~L~Ls~n~l~~~ 391 (523)
+.+.+..+.|++|++.... .......++|+.|+|++| .+... .++.. ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4677888889999876321 222344578999999998 43321 22222 24578899999988643
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=50.56 E-value=11 Score=46.19 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=25.1
Q ss_pred eCcCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 009858 358 NLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390 (523)
Q Consensus 358 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 390 (523)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577888886666677788888888888887753
No 101
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.29 E-value=9.5 Score=28.11 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=5.2
Q ss_pred eehhhhhHHHHHH
Q 009858 475 GYVCGTVFGMILG 487 (523)
Q Consensus 475 ~~~~~~~~~~~~~ 487 (523)
++++++.+.+++.
T Consensus 38 lvI~~iFil~Vil 50 (94)
T PF05393_consen 38 LVICGIFILLVIL 50 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3444443333333
No 102
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=47.65 E-value=24 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=17.6
Q ss_pred cceEEeeeehhhhhHHHHHHHHHhh
Q 009858 468 GWKVVLMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
....+++|++..+++++++++++|+
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEE
Confidence 4567788888777777666666665
No 103
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=44.68 E-value=30 Score=30.20 Aligned_cols=13 Identities=23% Similarity=0.697 Sum_probs=5.9
Q ss_pred EEeeeehhhhhHH
Q 009858 471 VVLMGYVCGTVFG 483 (523)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (523)
.+++||+++++++
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3445554444433
No 104
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.51 E-value=6.1 Score=31.77 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=15.9
Q ss_pred ceEEeeeehhhhhHHHHHHHHHhh
Q 009858 469 WKVVLMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
...|++|+++|++..+++++++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 456777888887666665555554
No 105
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=43.31 E-value=5.2 Score=32.86 Aligned_cols=8 Identities=13% Similarity=-0.010 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 009858 485 ILGYILLS 492 (523)
Q Consensus 485 ~~~~~~~~ 492 (523)
++++.+++
T Consensus 24 ~cgiGcvw 31 (158)
T PF11770_consen 24 LCGIGCVW 31 (158)
T ss_pred HHhcceEE
Confidence 33333333
No 106
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=41.48 E-value=44 Score=31.20 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=12.5
Q ss_pred EeeeehhhhhHHHHHHHHHhh
Q 009858 472 VLMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~ 492 (523)
+++|++.|++++++++++++.
T Consensus 215 iv~g~~~G~~~L~ll~~lv~~ 235 (278)
T PF06697_consen 215 IVVGVVGGVVLLGLLSLLVAM 235 (278)
T ss_pred EEEEehHHHHHHHHHHHHHHh
Confidence 456667777766666544443
No 107
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=37.80 E-value=16 Score=26.77 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=15.0
Q ss_pred cceEEeeeehhhhhHHHHHHHHHhhcCCcce
Q 009858 468 GWKVVLMGYVCGTVFGMILGYILLSTGNPQW 498 (523)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 498 (523)
.|.+++++.+++++++.+.+.+++++.+..|
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 3445555555555555555444444333334
No 108
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.59 E-value=29 Score=19.01 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=7.3
Q ss_pred CCCCEEeCCCCc
Q 009858 376 TDLESLDLSSNV 387 (523)
Q Consensus 376 ~~L~~L~Ls~n~ 387 (523)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 109
>PF15069 FAM163: FAM163 family
Probab=34.94 E-value=28 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=12.9
Q ss_pred eEEeeeehhhhhHHHHHHHHHhhcCCccee
Q 009858 470 KVVLMGYVCGTVFGMILGYILLSTGNPQWI 499 (523)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 499 (523)
++++.|.+.++|+++.+++++.+ ++..+|
T Consensus 5 TvVItGgILAtVILLcIIaVLCY-CRLQYY 33 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCY-CRLQYY 33 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHH-HhhHHH
Confidence 34555554444444444444433 334444
No 110
>PF15102 TMEM154: TMEM154 protein family
Probab=34.13 E-value=33 Score=28.45 Aligned_cols=6 Identities=0% Similarity=-0.026 Sum_probs=2.5
Q ss_pred eEEeee
Q 009858 470 KVVLMG 475 (523)
Q Consensus 470 ~~~~~~ 475 (523)
.+++..
T Consensus 60 mIlIP~ 65 (146)
T PF15102_consen 60 MILIPL 65 (146)
T ss_pred EEeHHH
Confidence 344444
No 111
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=30.42 E-value=17 Score=29.29 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHh
Q 009858 479 GTVFGMILGYILL 491 (523)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (523)
|++++++++++++
T Consensus 4 g~a~~~~lgYciY 16 (121)
T PF02064_consen 4 GVAAAAFLGYCIY 16 (121)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 3334444454444
No 112
>PTZ00234 variable surface protein Vir12; Provisional
Probab=28.64 E-value=28 Score=35.06 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 009858 483 GMILGYILLS 492 (523)
Q Consensus 483 ~~~~~~~~~~ 492 (523)
++++|+++|.
T Consensus 371 ~ailGtifFl 380 (433)
T PTZ00234 371 ASIIGVLVFL 380 (433)
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 113
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.24 E-value=19 Score=28.16 Aligned_cols=23 Identities=9% Similarity=-0.129 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCcceeeeeeccc
Q 009858 484 MILGYILLSTGNPQWIMGIVDGK 506 (523)
Q Consensus 484 ~~~~~~~~~~~~~~w~~~~~~~~ 506 (523)
+++++.+|+++++.-|..+.++.
T Consensus 38 iLLliGCWYckRRSGYk~L~~k~ 60 (118)
T PF14991_consen 38 ILLLIGCWYCKRRSGYKTLRDKS 60 (118)
T ss_dssp -----------------------
T ss_pred HHHHHhheeeeecchhhhhhhcc
Confidence 33333444433333344444433
No 114
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=27.11 E-value=30 Score=24.41 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=5.8
Q ss_pred eeeehhhhhHHHH
Q 009858 473 LMGYVCGTVFGMI 485 (523)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (523)
++|++.+++++++
T Consensus 35 aIGvi~gi~~~~l 47 (68)
T PF04971_consen 35 AIGVIGGIFFGLL 47 (68)
T ss_pred hHHHHHHHHHHHH
Confidence 3454444444444
No 115
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=26.01 E-value=22 Score=27.35 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=6.4
Q ss_pred EeeeehhhhccC
Q 009858 511 VRRQNKKLEGRR 522 (523)
Q Consensus 511 ~~~~~~~~~~~~ 522 (523)
+|.+|||.+.|+
T Consensus 27 ~RPQrKr~K~~~ 38 (97)
T COG1862 27 IRPQRKRMKEHQ 38 (97)
T ss_pred cCHHHHHHHHHH
Confidence 555555555543
No 116
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.27 E-value=44 Score=21.86 Aligned_cols=10 Identities=20% Similarity=0.674 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 009858 482 FGMILGYILL 491 (523)
Q Consensus 482 ~~~~~~~~~~ 491 (523)
+++.++++++
T Consensus 19 ~~~F~gi~~w 28 (49)
T PF05545_consen 19 FVFFIGIVIW 28 (49)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 117
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=24.11 E-value=33 Score=24.98 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=6.8
Q ss_pred ehhhhhHHHHHHHHHhh
Q 009858 476 YVCGTVFGMILGYILLS 492 (523)
Q Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (523)
++.|++++++++++++.
T Consensus 6 ~~~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheeEEE
Confidence 33444444434333333
No 118
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.80 E-value=23 Score=32.88 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=6.4
Q ss_pred eehhhhhHHHHHHHHHh
Q 009858 475 GYVCGTVFGMILGYILL 491 (523)
Q Consensus 475 ~~~~~~~~~~~~~~~~~ 491 (523)
|+++.|+++++|+++++
T Consensus 262 giaalvllil~vvliiL 278 (295)
T TIGR01478 262 GIAALVLIILTVVLIIL 278 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 119
>PTZ00370 STEVOR; Provisional
Probab=23.57 E-value=23 Score=32.91 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=6.5
Q ss_pred eehhhhhHHHHHHHHHh
Q 009858 475 GYVCGTVFGMILGYILL 491 (523)
Q Consensus 475 ~~~~~~~~~~~~~~~~~ 491 (523)
|+++.|+++++|+++++
T Consensus 258 giaalvllil~vvliil 274 (296)
T PTZ00370 258 GIAALVLLILAVVLIIL 274 (296)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 120
>PHA03265 envelope glycoprotein D; Provisional
Probab=22.10 E-value=57 Score=31.26 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHHHHhh
Q 009858 477 VCGTVFGMILGYILLS 492 (523)
Q Consensus 477 ~~~~~~~~~~~~~~~~ 492 (523)
+.+++.+++|++++++
T Consensus 355 g~~i~glv~vg~il~~ 370 (402)
T PHA03265 355 GLGIAGLVLVGVILYV 370 (402)
T ss_pred ccchhhhhhhhHHHHH
Confidence 3344444555555554
No 121
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.06 E-value=2e+02 Score=26.07 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=7.1
Q ss_pred hhhhhHHHHHHHHHhh
Q 009858 477 VCGTVFGMILGYILLS 492 (523)
Q Consensus 477 ~~~~~~~~~~~~~~~~ 492 (523)
.+|+++++++..+++.
T Consensus 64 LVG~Gv~LLLLSICL~ 79 (233)
T PF15345_consen 64 LVGSGVALLLLSICLS 79 (233)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3344444444444443
No 122
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.61 E-value=25 Score=26.88 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=13.9
Q ss_pred cccceEEeeeehhhhhHHHHHHHHHhhcCCcceeee
Q 009858 466 GFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMG 501 (523)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 501 (523)
+..|.+ ++|++.++++..+++++.. +.+.||..
T Consensus 14 g~sW~~-LVGVv~~al~~SlLIalaa--KC~~~~k~ 46 (102)
T PF15176_consen 14 GRSWPF-LVGVVVTALVTSLLIALAA--KCPVWYKY 46 (102)
T ss_pred CcccHh-HHHHHHHHHHHHHHHHHHH--HhHHHHHH
Confidence 334543 3444444444433333333 33445433
No 123
>PF15050 SCIMP: SCIMP protein
Probab=21.38 E-value=27 Score=27.54 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHhh
Q 009858 479 GTVFGMILGYILLS 492 (523)
Q Consensus 479 ~~~~~~~~~~~~~~ 492 (523)
.+++.+++++++|+
T Consensus 16 II~vS~~lglIlyC 29 (133)
T PF15050_consen 16 IILVSVVLGLILYC 29 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555553
No 124
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.34 E-value=68 Score=32.14 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=9.0
Q ss_pred Eeeeehhh--hhHHHHHHHHHh
Q 009858 472 VLMGYVCG--TVFGMILGYILL 491 (523)
Q Consensus 472 ~~~~~~~~--~~~~~~~~~~~~ 491 (523)
.|+||+++ +||+.+|+|+.|
T Consensus 368 aIaGIsvavvvvVgglvGfLcW 389 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCW 389 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhh
Confidence 34444433 344445555544
No 125
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.32 E-value=42 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=15.4
Q ss_pred eeeehhhhhHHHHHHHHHhh
Q 009858 473 LMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~ 492 (523)
|...++|+|+|+++|+++.+
T Consensus 8 W~~a~igLvvGi~IG~li~R 27 (138)
T COG3105 8 WEYALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888876
No 126
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.27 E-value=61 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=10.0
Q ss_pred eeeehhhhhHHHHHHHHHhh
Q 009858 473 LMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~ 492 (523)
-+||++++++..+++.+++.
T Consensus 51 N~GIli~f~i~f~~~~~~~~ 70 (103)
T PF06422_consen 51 NFGILIAFWIFFIVLTLLAT 70 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444443
No 127
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.19 E-value=54 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred cCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858 334 DLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365 (523)
Q Consensus 334 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 365 (523)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777788999999999999999775
No 128
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=21.09 E-value=47 Score=22.31 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=2.7
Q ss_pred hhhhccC
Q 009858 516 KKLEGRR 522 (523)
Q Consensus 516 ~~~~~~~ 522 (523)
+.++++|
T Consensus 25 sek~G~r 31 (56)
T TIGR02736 25 SQKKGER 31 (56)
T ss_pred hhccccc
Confidence 3334444
Done!