Query 009858
Match_columns 523
No_of_seqs 464 out of 5195
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-46 7.3E-51 405.9 20.8 355 90-450 340-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.6E-40 9E-45 358.2 18.7 392 37-434 240-715 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-40 1.9E-44 359.2 19.2 358 76-441 80-565 (844)
4 2id5_A Lingo-1, leucine rich r 100.0 8.4E-37 2.9E-41 313.5 23.0 325 93-440 32-360 (477)
5 3t6q_A CD180 antigen; protein- 100.0 2E-37 6.8E-42 328.0 18.3 395 39-440 76-564 (606)
6 3v47_A TOLL-like receptor 5B a 100.0 1.3E-36 4.4E-41 310.4 23.6 327 72-418 33-413 (455)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-37 2E-41 324.4 21.3 192 228-441 369-563 (606)
8 4eco_A Uncharacterized protein 100.0 5.1E-37 1.7E-41 325.1 20.4 331 87-437 200-601 (636)
9 2id5_A Lingo-1, leucine rich r 100.0 7.3E-36 2.5E-40 306.6 24.0 324 95-440 13-337 (477)
10 3v47_A TOLL-like receptor 5B a 100.0 2.4E-35 8.2E-40 301.0 24.5 347 93-440 30-412 (455)
11 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-35 9.2E-40 315.8 25.7 370 39-413 68-573 (680)
12 4eco_A Uncharacterized protein 100.0 7.1E-36 2.4E-40 316.3 18.2 312 113-435 205-578 (636)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-35 4.4E-40 314.1 19.4 385 44-433 32-531 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 3.4E-35 1.2E-39 316.5 23.0 328 87-435 442-839 (876)
15 2z63_A TOLL-like receptor 4, v 100.0 4.5E-35 1.5E-39 307.7 23.4 182 259-440 345-535 (570)
16 3t6q_A CD180 antigen; protein- 100.0 2.1E-34 7.2E-39 304.8 28.0 375 54-434 19-487 (606)
17 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-35 6.4E-40 285.7 15.6 259 114-445 50-312 (313)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-35 4.6E-40 324.6 15.3 357 86-447 66-565 (844)
19 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-34 1.2E-38 299.5 24.5 363 71-440 28-514 (549)
20 2z63_A TOLL-like receptor 4, v 100.0 9E-35 3.1E-39 305.4 19.1 357 40-420 48-538 (570)
21 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-34 1.5E-38 306.5 23.8 370 40-414 45-518 (680)
22 4g8a_A TOLL-like receptor 4; l 100.0 8.2E-34 2.8E-38 302.0 24.4 384 53-440 37-584 (635)
23 2z7x_B TOLL-like receptor 1, v 100.0 4E-34 1.4E-38 296.9 21.0 363 44-440 21-485 (520)
24 4ecn_A Leucine-rich repeat pro 100.0 2E-33 6.8E-38 302.7 24.3 331 93-435 423-818 (876)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.5E-33 1.2E-37 292.3 21.8 361 47-440 34-514 (562)
26 3o6n_A APL1; leucine-rich repe 100.0 7E-33 2.4E-37 276.7 21.7 309 91-438 43-354 (390)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-33 7.6E-38 293.8 18.5 343 44-418 52-515 (562)
28 1ogq_A PGIP-2, polygalacturona 100.0 6E-34 2E-38 275.1 12.6 248 93-413 50-304 (313)
29 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-33 1.1E-37 292.1 17.6 365 44-418 26-515 (549)
30 3oja_B Anopheles plasmodium-re 100.0 1.9E-32 6.4E-37 288.5 21.0 308 92-438 50-360 (597)
31 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-32 8.6E-37 283.4 20.8 327 93-433 21-431 (520)
32 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.9E-36 263.0 24.6 279 92-434 65-344 (347)
33 3o6n_A APL1; leucine-rich repe 100.0 2.7E-32 9.1E-37 272.5 18.7 319 79-439 55-377 (390)
34 4fmz_A Internalin; leucine ric 100.0 3.4E-31 1.2E-35 260.2 26.1 281 91-436 42-324 (347)
35 3oja_B Anopheles plasmodium-re 100.0 3.5E-32 1.2E-36 286.3 19.6 320 79-440 61-384 (597)
36 1xku_A Decorin; proteoglycan, 100.0 6.2E-31 2.1E-35 256.4 25.1 269 93-414 31-307 (330)
37 1o6v_A Internalin A; bacterial 100.0 6.6E-31 2.3E-35 268.5 26.3 342 42-436 44-388 (466)
38 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-31 1.9E-35 280.1 26.8 367 72-446 37-584 (635)
39 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-31 1.1E-35 258.5 22.7 267 93-413 33-307 (332)
40 1o6v_A Internalin A; bacterial 100.0 6.9E-30 2.4E-34 261.0 23.7 323 40-414 64-389 (466)
41 2z80_A TOLL-like receptor 2, v 100.0 7.1E-31 2.4E-35 258.5 15.2 279 94-418 32-319 (353)
42 3bz5_A Internalin-J, INLJ; leu 100.0 4.2E-29 1.4E-33 253.3 28.2 307 39-414 37-353 (457)
43 1xku_A Decorin; proteoglycan, 100.0 4.3E-29 1.5E-33 243.4 25.2 268 113-436 30-306 (330)
44 3zyi_A Leucine-rich repeat-con 100.0 9E-29 3.1E-33 251.7 24.7 251 94-416 55-306 (452)
45 2ft3_A Biglycan; proteoglycan, 100.0 7.4E-29 2.5E-33 241.9 22.0 266 114-436 33-307 (332)
46 3zyj_A Leucine-rich repeat-con 100.0 1.5E-28 5.2E-33 249.1 24.8 251 94-416 44-295 (440)
47 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4.2E-34 244.5 15.7 249 96-415 10-263 (306)
48 1jl5_A Outer protein YOPM; leu 100.0 2.7E-28 9.2E-33 247.2 25.7 178 93-297 111-288 (454)
49 1jl5_A Outer protein YOPM; leu 100.0 5.3E-28 1.8E-32 245.0 26.6 339 34-418 24-377 (454)
50 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-28 9E-33 247.5 24.1 292 93-434 42-350 (457)
51 4fcg_A Uncharacterized protein 100.0 1E-28 3.5E-33 239.8 17.8 235 113-413 80-314 (328)
52 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-28 6.1E-33 233.8 16.8 229 141-418 14-243 (285)
53 3zyj_A Leucine-rich repeat-con 100.0 5E-28 1.7E-32 245.3 20.5 251 140-440 45-296 (440)
54 3zyi_A Leucine-rich repeat-con 100.0 6.3E-28 2.2E-32 245.5 20.6 250 141-440 57-307 (452)
55 2z80_A TOLL-like receptor 2, v 100.0 8.1E-29 2.8E-33 243.7 12.9 257 93-393 52-318 (353)
56 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-28 6.2E-33 233.8 14.7 252 96-418 14-266 (285)
57 4fcg_A Uncharacterized protein 100.0 2.2E-28 7.6E-33 237.5 15.5 224 92-389 80-314 (328)
58 2z66_A Variable lymphocyte rec 100.0 2E-28 6.7E-33 236.1 14.9 249 141-439 10-264 (306)
59 1wwl_A Monocyte differentiatio 100.0 1.3E-29 4.4E-34 244.8 5.2 250 114-414 43-310 (312)
60 1z7x_W Ribonuclease inhibitor; 99.9 3.1E-29 1.1E-33 256.2 2.7 336 40-415 24-413 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-29 1.3E-33 242.2 1.8 265 94-417 11-280 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-25 3.8E-30 234.9 26.7 242 93-418 61-302 (622)
63 1wwl_A Monocyte differentiatio 99.9 3.9E-29 1.4E-33 241.4 -0.5 249 92-391 42-311 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 8.4E-27 2.9E-31 225.6 11.6 239 116-413 12-250 (317)
65 3oja_A Leucine-rich immune mol 99.9 2.8E-27 9.5E-32 242.1 7.9 234 115-407 35-269 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.8E-30 211.6 19.3 227 143-419 12-243 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 1E-28 3.5E-33 252.3 -3.8 322 93-414 3-384 (461)
68 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.7E-31 237.0 10.8 225 130-413 22-250 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 8.6E-25 2.9E-29 207.2 18.3 229 97-393 11-241 (276)
70 2o6q_A Variable lymphocyte rec 99.9 7.4E-24 2.5E-28 200.0 21.5 206 139-417 17-222 (270)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1E-23 3.6E-28 220.0 23.3 269 44-400 40-308 (622)
72 2o6q_A Variable lymphocyte rec 99.9 1.6E-23 5.6E-28 197.6 19.7 205 114-391 16-220 (270)
73 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4E-28 198.8 17.5 178 92-274 40-218 (272)
74 1p9a_G Platelet glycoprotein I 99.9 2.8E-23 9.6E-28 197.8 19.0 184 91-281 8-191 (290)
75 3rfs_A Internalin B, repeat mo 99.9 2.8E-24 9.6E-29 203.1 11.6 175 93-274 19-194 (272)
76 4glp_A Monocyte differentiatio 99.9 7.7E-24 2.6E-28 204.1 14.8 231 138-414 64-308 (310)
77 1p9a_G Platelet glycoprotein I 99.9 4E-23 1.4E-27 196.7 17.6 204 159-415 7-210 (290)
78 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.8E-29 214.8 6.3 176 98-274 3-209 (362)
79 2ast_B S-phase kinase-associat 99.9 1.8E-24 6.2E-29 211.3 5.0 252 94-418 48-311 (336)
80 3goz_A Leucine-rich repeat-con 99.9 2.2E-24 7.4E-29 212.7 5.5 259 118-415 2-299 (362)
81 2ca6_A RAN GTPase-activating p 99.9 5.8E-25 2E-29 218.9 1.4 249 130-417 24-320 (386)
82 2xwt_C Thyrotropin receptor; s 99.9 8.5E-23 2.9E-27 189.1 13.7 206 150-411 23-237 (239)
83 3ogk_B Coronatine-insensitive 99.9 6E-25 2.1E-29 231.6 -0.9 319 91-414 162-527 (592)
84 4glp_A Monocyte differentiatio 99.9 6.4E-23 2.2E-27 197.7 12.5 224 93-390 64-308 (310)
85 3m19_A Variable lymphocyte rec 99.9 3.3E-22 1.1E-26 186.5 16.8 120 328-448 107-232 (251)
86 3m19_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 183.4 19.8 181 93-276 14-194 (251)
87 2ast_B S-phase kinase-associat 99.9 5.5E-24 1.9E-28 207.8 2.0 177 93-272 70-258 (336)
88 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.6E-28 209.8 3.7 235 113-393 31-320 (386)
89 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.7E-26 188.6 16.6 80 328-413 151-230 (308)
90 2xwt_C Thyrotropin receptor; s 99.9 3.6E-22 1.2E-26 184.8 12.8 200 112-387 29-237 (239)
91 1h6u_A Internalin H; cell adhe 99.9 6.3E-21 2.2E-25 183.3 16.7 124 113-247 40-163 (308)
92 4ay9_X Follicle-stimulating ho 99.9 6.4E-21 2.2E-25 186.8 15.5 181 96-280 12-196 (350)
93 4ay9_X Follicle-stimulating ho 99.8 1.2E-20 4.2E-25 184.9 16.9 240 117-410 12-256 (350)
94 2o6s_A Variable lymphocyte rec 99.8 2.6E-20 8.9E-25 168.4 15.2 175 96-280 10-184 (208)
95 2o6s_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 166.8 16.2 152 117-274 10-161 (208)
96 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.6E-26 206.0 2.5 317 113-434 163-524 (592)
97 3cvr_A Invasion plasmid antige 99.8 3.2E-20 1.1E-24 191.4 12.1 43 355-398 210-252 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.8E-24 186.6 16.3 182 164-418 60-248 (571)
99 2v9t_B SLIT homolog 2 protein 99.8 3.7E-19 1.3E-23 162.0 15.8 152 96-248 14-165 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-19 9.4E-24 162.9 14.3 151 96-247 14-165 (220)
101 2p1m_B Transport inhibitor res 99.8 3.2E-21 1.1E-25 203.3 -0.4 88 325-413 429-519 (594)
102 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 174.0 13.7 177 96-275 21-203 (361)
103 3e6j_A Variable lymphocyte rec 99.8 2.5E-18 8.7E-23 157.6 17.0 153 94-249 20-173 (229)
104 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.6E-23 166.3 13.3 168 92-274 45-213 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-18 1.5E-22 154.9 15.9 161 116-282 13-174 (220)
106 2v9t_B SLIT homolog 2 protein 99.8 4.7E-18 1.6E-22 154.7 15.9 158 117-280 14-171 (220)
107 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.6E-23 171.8 12.2 163 116-283 20-184 (361)
108 2p1m_B Transport inhibitor res 99.8 1.1E-19 3.8E-24 191.4 5.4 108 326-434 395-517 (594)
109 1m9s_A Internalin B; cell inva 99.8 3.3E-18 1.1E-22 178.4 14.6 167 93-274 21-188 (605)
110 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 9E-23 163.5 12.5 140 98-248 29-169 (291)
111 1m9s_A Internalin B; cell inva 99.8 3.4E-18 1.2E-22 178.3 14.1 168 92-274 42-210 (605)
112 4ezg_A Putative uncharacterize 99.8 7.3E-18 2.5E-22 150.8 13.5 151 113-274 43-194 (197)
113 3e6j_A Variable lymphocyte rec 99.8 2E-17 7E-22 151.5 16.8 157 115-278 20-176 (229)
114 4ezg_A Putative uncharacterize 99.7 9.5E-18 3.3E-22 150.0 10.8 152 91-249 42-195 (197)
115 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.9E-22 155.9 9.3 166 93-274 19-185 (263)
116 4b8c_D Glucose-repressible alc 99.7 2E-18 6.9E-23 184.5 2.8 114 131-249 217-330 (727)
117 1dce_A Protein (RAB geranylger 99.7 2.9E-20 1E-24 192.7 -11.3 204 135-418 346-551 (567)
118 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.5E-21 140.8 14.5 130 96-226 11-141 (192)
119 1w8a_A SLIT protein; signaling 99.7 4.2E-17 1.4E-21 145.0 10.1 114 327-440 53-166 (192)
120 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.5E-21 149.3 12.4 147 92-250 40-187 (263)
121 4b8c_D Glucose-repressible alc 99.7 2.4E-17 8.1E-22 176.2 7.0 191 143-389 206-404 (727)
122 3sb4_A Hypothetical leucine ri 99.7 1.1E-16 3.9E-21 155.2 10.1 260 92-406 48-327 (329)
123 1dce_A Protein (RAB geranylger 99.7 5.3E-19 1.8E-23 183.2 -7.3 103 328-435 441-545 (567)
124 2wfh_A SLIT homolog 2 protein 99.6 1.8E-15 6.3E-20 134.4 14.7 126 96-223 13-138 (193)
125 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.1E-20 131.6 15.4 133 95-228 9-141 (177)
126 2wfh_A SLIT homolog 2 protein 99.6 1.8E-15 6.3E-20 134.4 13.7 126 117-247 13-138 (193)
127 2ell_A Acidic leucine-rich nuc 99.6 2.5E-16 8.5E-21 136.9 7.6 105 93-200 24-133 (168)
128 2ell_A Acidic leucine-rich nuc 99.6 6.7E-16 2.3E-20 134.2 10.2 132 138-274 24-160 (168)
129 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.6E-20 148.3 10.7 271 113-415 24-312 (329)
130 2je0_A Acidic leucine-rich nuc 99.6 3.2E-16 1.1E-20 133.2 5.4 105 93-200 17-126 (149)
131 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.6E-20 130.1 8.5 109 138-249 17-127 (149)
132 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.6E-19 127.7 13.4 133 140-278 9-141 (177)
133 4fdw_A Leucine rich hypothetic 99.5 1.4E-13 4.9E-18 136.3 18.7 242 115-412 136-382 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.7E-19 125.8 9.7 136 133-274 14-153 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.4E-19 124.9 7.7 125 91-222 17-151 (176)
136 4fdw_A Leucine rich hypothetic 99.5 6.2E-13 2.1E-17 131.7 16.6 242 113-413 112-358 (401)
137 1ds9_A Outer arm dynein; leuci 99.5 5.1E-16 1.8E-20 138.8 -5.9 137 93-250 18-155 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 5.4E-16 1.9E-20 138.6 -6.0 111 157-274 43-153 (198)
139 3g39_A Variable lymphocyte rec 99.5 2.6E-13 9E-18 117.7 10.7 105 140-248 11-115 (170)
140 3g39_A Variable lymphocyte rec 99.4 6E-13 2E-17 115.5 12.0 106 117-226 12-117 (170)
141 2r9u_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 116.3 10.7 104 141-248 15-118 (174)
142 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 113.6 12.0 87 138-225 33-119 (174)
143 3un9_A NLR family member X1; l 99.3 1.9E-13 6.6E-18 134.0 -0.6 157 93-249 72-253 (372)
144 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 135.6 -3.0 163 113-275 71-253 (372)
145 4fs7_A Uncharacterized protein 99.3 8E-11 2.8E-15 116.9 16.9 310 84-410 62-376 (394)
146 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 117.5 9.7 88 326-414 29-117 (347)
147 2ifg_A High affinity nerve gro 99.2 4.2E-11 1.4E-15 116.8 8.9 102 119-224 13-116 (347)
148 4fs7_A Uncharacterized protein 99.1 3.9E-10 1.3E-14 111.9 13.1 288 81-405 82-393 (394)
149 4gt6_A Cell surface protein; l 98.9 4.9E-08 1.7E-12 96.7 20.2 296 86-412 56-369 (394)
150 2ra8_A Uncharacterized protein 98.9 8.9E-10 3E-14 107.0 6.8 59 351-411 278-341 (362)
151 2ra8_A Uncharacterized protein 98.9 3.5E-10 1.2E-14 109.9 2.3 35 138-173 107-149 (362)
152 4gt6_A Cell surface protein; l 98.8 5.5E-08 1.9E-12 96.3 16.1 296 81-412 75-390 (394)
153 4h09_A Hypothetical leucine ri 98.7 1.3E-06 4.5E-11 85.9 20.0 82 327-410 262-343 (379)
154 1io0_A Tropomodulin; LRR prote 98.5 4E-08 1.4E-12 86.0 1.9 19 133-151 31-50 (185)
155 1io0_A Tropomodulin; LRR prote 98.4 6.4E-08 2.2E-12 84.7 2.7 92 131-223 58-163 (185)
156 3rw6_A Nuclear RNA export fact 98.3 2E-07 7E-12 85.7 3.2 88 328-418 141-238 (267)
157 3rw6_A Nuclear RNA export fact 98.3 4.6E-07 1.6E-11 83.4 5.4 80 325-406 167-257 (267)
158 4h09_A Hypothetical leucine ri 98.3 3.6E-05 1.2E-09 75.5 18.6 287 81-401 57-357 (379)
159 3e4g_A ATP synthase subunit S, 98.1 3.5E-07 1.2E-11 78.0 -0.5 84 328-411 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.4E-11 74.5 2.0 83 115-197 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.2 0.00074 2.5E-08 54.7 7.1 57 356-414 12-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00016 5.3E-09 62.9 3.2 86 135-221 38-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00017 5.7E-09 62.6 3.3 87 327-413 69-170 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0017 5.9E-08 52.4 7.0 56 96-151 11-68 (130)
165 2ks1_B Epidermal growth factor 91.5 0.026 9E-07 35.0 -0.6 18 472-489 13-30 (44)
166 2l2t_A Receptor tyrosine-prote 86.3 0.064 2.2E-06 33.2 -1.5 16 472-487 12-27 (44)
167 2a5y_B CED-4; apoptosis; HET: 80.1 0.12 4E-06 53.0 -3.6 37 3-41 432-468 (549)
168 2knc_B Integrin beta-3; transm 56.5 0.36 1.2E-05 34.4 -4.2 21 498-518 34-54 (79)
169 2rdd_B UPF0092 membrane protei 51.1 3.3 0.00011 24.5 0.0 12 511-522 21-32 (37)
170 2k1k_A Ephrin type-A receptor 47.3 2.9 9.9E-05 24.9 -0.6 12 474-485 14-25 (38)
171 2lz0_A Uncharacterized protein 41.5 31 0.0011 25.6 4.2 46 363-409 7-52 (100)
172 2lz0_A Uncharacterized protein 39.0 70 0.0024 23.6 5.9 40 179-219 12-51 (100)
173 2k9y_A Ephrin type-A receptor 22.4 25 0.00086 21.0 0.6 9 474-482 17-25 (41)
174 2k1a_A Integrin alpha-IIB; sin 20.9 30 0.001 21.0 0.7 23 470-492 11-33 (42)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-46 Score=405.86 Aligned_cols=355 Identities=32% Similarity=0.521 Sum_probs=239.8
Q ss_pred CCCCCccEEEccCCCCccCCCCC---CC-CCcEEEccCCcCCCcCchhhhC--CCCcCEEEccCCcCCccChhhHhhccc
Q 009858 90 LPWKNLEYLDLRSNLLQGPVPAP---SS-NMRVFLISNNKFIGEIPRLICN--TSTIEILDLSNNSLSGTIPECIGNFSK 163 (523)
Q Consensus 90 ~~~~~L~~L~L~~n~l~~~~~~~---~~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~ 163 (523)
..+++|++|++++|.+++.+|.. ++ +|++|++++|.+++..|..+.. +++|++|++++|.+++.+|..+..+.
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~- 418 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS- 418 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-
Confidence 34455555555555555444443 22 5555555555554444444443 45555566666655555666666555
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (523)
+|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 56666666666665666666666666666666666666666666666666666666666665666666666666666666
Q ss_pred cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcccc-----------c---
Q 009858 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYY-----------E--- 309 (523)
Q Consensus 244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~-----------~--- 309 (523)
+|.+.+..|.++ ..+++|++|++++|.+.+.+|.. +..++.|+.++++.+...... +...+ .
T Consensus 499 ~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~i-p~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 499 NNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTI-PAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp SSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBC-CGGGGTTTTCBCCSTTCSCE
T ss_pred CCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcC-ChHHhcccchhhhhcccccc
Confidence 666665555554 44566666666666666555543 455566666665554322100 00000 0
Q ss_pred ---------------------------------------cceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858 310 ---------------------------------------DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK 350 (523)
Q Consensus 310 ---------------------------------------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 350 (523)
..............+..++.|+.|+|++|.++|.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 00000011111123344688999999999999999999999
Q ss_pred cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCcc
Q 009858 351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSY 430 (523)
Q Consensus 351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 430 (523)
+++|+.|+|++|++++.+|..|+.+++|+.|||++|++++.+|..+.++++|++|++++|+++|.+|...+|.++...+|
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 009858 431 GGNLGLCGFPLSKNCSNDEP 450 (523)
Q Consensus 431 ~gn~~lc~~~~~~~c~~~~~ 450 (523)
.||+++||.|+. .|.....
T Consensus 735 ~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 735 LNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp CSCTEEESTTSC-CCCSCC-
T ss_pred cCCchhcCCCCc-CCCCCcc
Confidence 999999999987 8876543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-40 Score=358.17 Aligned_cols=392 Identities=30% Similarity=0.397 Sum_probs=282.9
Q ss_pred hHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCC-CCCccEEEccCCCCccCCCCC---
Q 009858 37 SSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLP-WKNLEYLDLRSNLLQGPVPAP--- 112 (523)
Q Consensus 37 ~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~--- 112 (523)
+..+..+.+|++|+++.|.+.+..+.. .+.. ....++..+.+...++..+.. +++|++|++++|.+++.+|..
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~-L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--CCTT-CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--ccCC-CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 344556778999999999876533221 1222 122223333333233333333 489999999999998887765
Q ss_pred CCCCcEEEccCCcCCCcCchh-hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCC--CCCC
Q 009858 113 SSNMRVFLISNNKFIGEIPRL-ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK--GNNL 189 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~--l~~L 189 (523)
+++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+..+.++|++|++++|.+++..|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 889999999999998777765 8899999999999999988899888887546888888888888777776665 6777
Q ss_pred CEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEecc
Q 009858 190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269 (523)
Q Consensus 190 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 269 (523)
++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+ ..+++|++|+++
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~ 474 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILD 474 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECC
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEec
Confidence 777777777777777777777777777777777777777777777777777777777776666555 556777777777
Q ss_pred CccCCCCCchHHHhccccccccccccccccccccCc-cccccceEE-----EecchhHHHHHhhcccccccCCCCccCcC
Q 009858 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGE 343 (523)
Q Consensus 270 ~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 343 (523)
+|.+++.+|.. +.++++|+.++++.+......... ........+ .+.......+..+++|+.|++++|.+++.
T Consensus 475 ~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 475 FNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp SSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 77777666643 566777777777666433211000 000111111 11112233455678888888888888777
Q ss_pred cchhh----------------------------------------------------------------------cCccc
Q 009858 344 IPELM----------------------------------------------------------------------GKLHS 353 (523)
Q Consensus 344 ~~~~~----------------------------------------------------------------------~~l~~ 353 (523)
+|..+ ..+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 66543 33577
Q ss_pred CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCC
Q 009858 354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGG 432 (523)
Q Consensus 354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~g 432 (523)
|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|||++|+++|.+|.. ..+..+...++.+
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999999999999999999999999999999999999999999999999999999999974 3455666667777
Q ss_pred CC
Q 009858 433 NL 434 (523)
Q Consensus 433 n~ 434 (523)
|.
T Consensus 714 N~ 715 (768)
T 3rgz_A 714 NN 715 (768)
T ss_dssp SE
T ss_pred Cc
Confidence 74
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-40 Score=359.19 Aligned_cols=358 Identities=19% Similarity=0.201 Sum_probs=230.5
Q ss_pred ccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC-----CCCCCcEEEccCCcCCCcCc-hhhhCCCCcCEEEccCCc
Q 009858 76 FEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA-----PSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSNNS 149 (523)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 149 (523)
+..+.+....+..+..+++|++|+|++|.+++..+. .+++|++|++++|.+++..+ ..|.++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 333444445555666677777777777777664432 16777777777777766544 467777777777777777
Q ss_pred CCccChhhHhhc--ccCCcEEEccCCcccccCCCCCCCC-----------------------------------------
Q 009858 150 LSGTIPECIGNF--SKSLRVLDLRKNRFHGTIPETFPKG----------------------------------------- 186 (523)
Q Consensus 150 l~~~~p~~l~~l--~~~L~~L~L~~n~l~~~~p~~~~~l----------------------------------------- 186 (523)
+++..|..+..+ . +|++|++++|.+.+..|..+..+
T Consensus 160 i~~~~~~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 160 IFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCSGGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CCeeCHHHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 776666666554 2 34444444443333222222211
Q ss_pred ---------------------------CCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCe
Q 009858 187 ---------------------------NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV 239 (523)
Q Consensus 187 ---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 239 (523)
++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 35666666666666666667777888888888888887777778888888888
Q ss_pred EEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccccccc-Cc--------ccc--
Q 009858 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM-GE--------TYY-- 308 (523)
Q Consensus 240 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~-~~--------~~~-- 308 (523)
|++++|.+.+..+..+ ..+++|+.|++++|.+. .++...+.++++|+.|+++.+....... +. ...
T Consensus 319 L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp EEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCC
T ss_pred EECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccc
Confidence 8888888877666655 56788888888888886 5555567778888888887765432110 00 000
Q ss_pred -----ccceEEE-----ecc-hhHHHHHhhcccccccCCCCccCc------------------------------Ccchh
Q 009858 309 -----EDSVTLI-----IKR-QEVKLMKILTIFTTIDLSKNSFHG------------------------------EIPEL 347 (523)
Q Consensus 309 -----~~~~~~~-----~~~-~~~~~~~~~~~L~~L~Ls~n~l~~------------------------------~~~~~ 347 (523)
.....+. +.. .....+..+++|+.|+|++|.+++ ..+..
T Consensus 396 l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 0000000 000 011122244555555555555542 22344
Q ss_pred hcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccC
Q 009858 348 MGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427 (523)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 427 (523)
+..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|++++..|. .+..+..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~ 551 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSV 551 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCE
Confidence 66677888888888888877777788888888888888888877666655 7788888888888877775 3567778
Q ss_pred CccCCCCCCCCCCC
Q 009858 428 DSYGGNLGLCGFPL 441 (523)
Q Consensus 428 ~~~~gn~~lc~~~~ 441 (523)
..+.|||+.|+|+.
T Consensus 552 l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 552 LDITHNKFICECEL 565 (844)
T ss_dssp EEEEEECCCCSSSC
T ss_pred EEecCCCccccccc
Confidence 88999999997653
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=313.55 Aligned_cols=325 Identities=19% Similarity=0.186 Sum_probs=264.3
Q ss_pred CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEE
Q 009858 93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVL 168 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L 168 (523)
+++++|+|++|.+++..+.. +++|++|+|++|.+++..|.+|.++++|++|+|++|.++ .+|. .+..+. +|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS-NLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCT-TCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCC-CCCEE
Confidence 68899999999998876654 788999999999998888888999999999999999998 4554 466776 89999
Q ss_pred EccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 169 DLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
++++|.+++..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999999888888999999999999999998888888999999999999999998777778889999999999999887
Q ss_pred CcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc
Q 009858 249 GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328 (523)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (523)
+..+..+ ..+++|+.|++++|...+.+|...+.. .+|+.++++.+... ......+..++
T Consensus 190 ~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~------------------~~~~~~~~~l~ 248 (477)
T 2id5_A 190 AIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLT------------------AVPYLAVRHLV 248 (477)
T ss_dssp EECTTCS--CSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCC------------------SCCHHHHTTCT
T ss_pred EeChhhc--ccCcccceeeCCCCccccccCcccccC-ccccEEECcCCccc------------------ccCHHHhcCcc
Confidence 7666555 668899999999988777777665443 36777777655322 12223455688
Q ss_pred ccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408 (523)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 408 (523)
+|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 99999999999997777888999999999999999998889999999999999999999998888888999999999999
Q ss_pred CCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858 409 RNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 409 ~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+|++.+..+....+.......+.++...|..|
T Consensus 329 ~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 329 SNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 99998665432222223334566666666554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-37 Score=327.96 Aligned_cols=395 Identities=20% Similarity=0.140 Sum_probs=279.6
Q ss_pred HHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCC-CCC--CCC
Q 009858 39 FVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPV-PAP--SSN 115 (523)
Q Consensus 39 ~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~~ 115 (523)
.+..+.+|++|++++|.+.+..+.....+.. ....++..+.+.......+..+++|++|++++|.+++.. |.. +++
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 154 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTT-CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred hccCccccCeeeCCCCcccccChhhhccccc-ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence 3556778899999999877654433222222 222334444455544556777888888888888888743 332 788
Q ss_pred CcEEEccCCcCCCcCchhhhCCCCcC--EEEccCCcCCccCh--------------------------------------
Q 009858 116 MRVFLISNNKFIGEIPRLICNTSTIE--ILDLSNNSLSGTIP-------------------------------------- 155 (523)
Q Consensus 116 L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p-------------------------------------- 155 (523)
|++|++++|.+++..+..|..+++|+ .|++++|.+++..|
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence 88888888888877777777777777 66666666553332
Q ss_pred -------------------------------------hhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC
Q 009858 156 -------------------------------------ECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198 (523)
Q Consensus 156 -------------------------------------~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (523)
..+..+. +|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 2244555 7999999999998 778888999999999999999
Q ss_pred CCCCCCccccCCCCCcEEECCCCcCCCCchH-hhhcCCCCCeEEeccccccCcC--CCccccccCCCCcEEeccCccCCC
Q 009858 199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPH-WLGTLRELQVLILRSNKFYGHL--RDYEADYYFSKLRILDLSNNNFTG 275 (523)
Q Consensus 199 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~ 275 (523)
+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+ ..+++|++|++++|.+.+
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEE
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCc
Confidence 9877788888999999999999988755544 4888899999999998887654 3333 668888888888888874
Q ss_pred CCchHHHhccccccccccccccccccccCc--cccccceEEE-----ecchhHHHHHhhcccccccCCCCccCcC---cc
Q 009858 276 SLPAMFFKNMKAMTDIGEAADENKSKYMGE--TYYEDSVTLI-----IKRQEVKLMKILTIFTTIDLSKNSFHGE---IP 345 (523)
Q Consensus 276 ~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~ 345 (523)
. +...+..+++|+.++++.+......... ........+. +.......+..+++|++|++++|.+++. .+
T Consensus 391 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 391 L-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp E-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred C-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 4 3345777888888888776543221111 0011111111 1122233455678888888888888752 23
Q ss_pred hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCc
Q 009858 346 ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFAT 424 (523)
Q Consensus 346 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 424 (523)
..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+.+++.| .|++++|++++..|.. ..+..
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 567788888888888888888778888888888888888888888888888888888 8888888888666643 33455
Q ss_pred ccCCccCCCCCCCCCC
Q 009858 425 FSSDSYGGNLGLCGFP 440 (523)
Q Consensus 425 ~~~~~~~gn~~lc~~~ 440 (523)
+....+.||+..|.++
T Consensus 549 L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSEEECTTCCEECSGG
T ss_pred CCEEeCCCCCccccCC
Confidence 6667777777776554
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-36 Score=310.41 Aligned_cols=327 Identities=20% Similarity=0.247 Sum_probs=168.7
Q ss_pred hhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC-C---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC
Q 009858 72 SAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA-P---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147 (523)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (523)
...++..+.+.......+..+++|++|++++|.+.+.++. . +++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 3344444444444445555666666666666666543322 1 56666666666666666666666666666666666
Q ss_pred CcCCccChhh--HhhcccCCcEEEccCCcccccCCCC-CCCCCCCCEEECcCCCCCCCCCccccCC--CCCcEEECCCCc
Q 009858 148 NSLSGTIPEC--IGNFSKSLRVLDLRKNRFHGTIPET-FPKGNNLTTLNFNGNELVGSVPRSLLNC--ANLQVLDLGNNK 222 (523)
Q Consensus 148 n~l~~~~p~~--l~~l~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~ 222 (523)
|.+++..|.. +..+. +|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|++++|.
T Consensus 113 n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp SCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred CCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 6666544443 55555 5666666666666555554 5666666666666666665555555443 333444444443
Q ss_pred CCCCchHh--------hhcCCCCCeEEeccccccCcCCCcc-------------------------------------cc
Q 009858 223 MKDTFPHW--------LGTLRELQVLILRSNKFYGHLRDYE-------------------------------------AD 257 (523)
Q Consensus 223 l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~-------------------------------------~~ 257 (523)
+.+..+.. +..+++|++|++++|.+.+..+..+ ..
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence 33222111 1123445555555554433222211 11
Q ss_pred ccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCC
Q 009858 258 YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSK 337 (523)
Q Consensus 258 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 337 (523)
...++|+.|++++|.+.+..| ..+..+++|+.++++.+..... ....+..+++|++|+|++
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~------------------~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKI------------------DDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEE------------------CTTTTTTCTTCCEEECCS
T ss_pred ccccCceEEEecCccccccch-hhcccCCCCCEEECCCCccccc------------------ChhHhcCcccCCEEECCC
Confidence 122456666666666653333 3345555555555544322110 011122245555555555
Q ss_pred CccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858 338 NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP 417 (523)
Q Consensus 338 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 417 (523)
|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 55554445555555555555555555555445555555555555555555555444445555555555555555555554
Q ss_pred C
Q 009858 418 E 418 (523)
Q Consensus 418 ~ 418 (523)
.
T Consensus 413 ~ 413 (455)
T 3v47_A 413 R 413 (455)
T ss_dssp T
T ss_pred c
Confidence 3
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-37 Score=324.37 Aligned_cols=192 Identities=18% Similarity=0.122 Sum_probs=133.8
Q ss_pred hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccc
Q 009858 228 PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307 (523)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 307 (523)
|..+..+++|++|++++|.+.+.. ..+ ..+++|+.|++++|.+.+..|...+..+++|+.++++.+....
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------- 438 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI------- 438 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-------
T ss_pred hhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-------
Confidence 344444444444444444443322 222 3345555555555555544333344555555555555443211
Q ss_pred cccceEEEecchhHHHHHhhcccccccCCCCccCc-CcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCC
Q 009858 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386 (523)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 386 (523)
.....+..+++|++|++++|.+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 439 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 439 -----------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp -----------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----------cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 112234557899999999999997 37888999999999999999999988999999999999999999
Q ss_pred cCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCC-cccCCccCCCCCCCCCCC
Q 009858 387 VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFA-TFSSDSYGGNLGLCGFPL 441 (523)
Q Consensus 387 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~-~~~~~~~~gn~~lc~~~~ 441 (523)
++++..|..+..+++|++|++++|+++ .+|.. ..+. .+....+.+|+..|+++.
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999998999999999999999999999 55654 2333 367777889988887664
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.1e-37 Score=325.06 Aligned_cols=331 Identities=17% Similarity=0.237 Sum_probs=239.4
Q ss_pred CCCCCCCCccEEEccCCCCccC-----------------CCCC-----CCCCcEEEccCCcCCCcCchhhhCCCCcCEEE
Q 009858 87 NKKLPWKNLEYLDLRSNLLQGP-----------------VPAP-----SSNMRVFLISNNKFIGEIPRLICNTSTIEILD 144 (523)
Q Consensus 87 ~~~~~~~~L~~L~L~~n~l~~~-----------------~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 144 (523)
..+..+++|++|+|++|.+++. +|.. +++|++|++++|.+.+.+|..|.++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 3455688999999999999884 5543 67899999999998888998899999999999
Q ss_pred ccCCc-CCc-cChhhHhhc------ccCCcEEEccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 009858 145 LSNNS-LSG-TIPECIGNF------SKSLRVLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ 214 (523)
Q Consensus 145 L~~n~-l~~-~~p~~l~~l------~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 214 (523)
+++|+ +++ .+|..++.+ . +|++|++++|+++ .+|. .++.+++|++|++++|.+.+.+| .+..+++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 99998 887 788888886 5 7999999999888 7787 78888889999999888887777 777777777
Q ss_pred EEECCCCcCCCCchHhhhcCCC-CCeEEeccccccCcCCCccccccCCCCcEEeccCccCCC------------------
Q 009858 215 VLDLGNNKMKDTFPHWLGTLRE-LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG------------------ 275 (523)
Q Consensus 215 ~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------ 275 (523)
+|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+....+++|+.|++++|.+.+
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 7777777776 66667777777 777777777766 34443322223345555555554444
Q ss_pred ------------CCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcC
Q 009858 276 ------------SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE 343 (523)
Q Consensus 276 ------------~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 343 (523)
.+|..++..++.|+.++++.+... .++...+.... .....+++|+.|+|++|.++ .
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~---------~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDEN---------ENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETT---------EECTTGGGCCEEECCSSCCC-B
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhcccc---------ccccccCCccEEECcCCcCC-c
Confidence 444444444555555554444322 11111000000 00112348888999999888 6
Q ss_pred cchhhc--CcccCCeeeCcCCcccccCCccccCCCCCCEEeC------CCCcCCCcCChhhcCCCCCCeEECCCCcCccc
Q 009858 344 IPELMG--KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDL------SSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR 415 (523)
Q Consensus 344 ~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 415 (523)
+|..+. .+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 777776 88899999999999886 7888888899999988 55778888888888899999999999998 57
Q ss_pred CCCCCCCCcccCCccCCCCCCC
Q 009858 416 IPEGNQFATFSSDSYGGNLGLC 437 (523)
Q Consensus 416 ~p~~~~~~~~~~~~~~gn~~lc 437 (523)
+|.. .+..+..+.+.+|+..|
T Consensus 581 ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 581 VNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSC-CCTTCCEEECCSCTTCE
T ss_pred cCHh-HhCcCCEEECcCCCCcc
Confidence 7765 33667777778887665
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=306.56 Aligned_cols=324 Identities=20% Similarity=0.193 Sum_probs=278.9
Q ss_pred ccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858 95 LEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174 (523)
Q Consensus 95 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~ 174 (523)
-+.++.+++.++..+....++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+..+. +|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCc
Confidence 35788888888876655688999999999999988889999999999999999999977799999998 89999999999
Q ss_pred ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCc
Q 009858 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY 254 (523)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 254 (523)
++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99777778999999999999999999888899999999999999999999888889999999999999999987665444
Q ss_pred cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccccc
Q 009858 255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTID 334 (523)
Q Consensus 255 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 334 (523)
+ ..+++|+.|++++|.+. .++...+..+++|+.++++.+......... .....+|+.|+
T Consensus 172 l--~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~~~L~~L~ 230 (477)
T 2id5_A 172 L--SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPN------------------CLYGLNLTSLS 230 (477)
T ss_dssp H--TTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTT------------------TTTTCCCSEEE
T ss_pred h--cccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcc------------------cccCccccEEE
Confidence 4 67899999999999998 455566888999999998865432211110 01134899999
Q ss_pred CCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 335 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
+++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+++
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 99999996555789999999999999999998888889999999999999999999999999999999999999999996
Q ss_pred cCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858 415 RIPEG-NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 415 ~~p~~-~~~~~~~~~~~~gn~~lc~~~ 440 (523)
..+.. ..+..+..+.+.+|+..|+++
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred eCHhHcCCCcccCEEEccCCCccCccc
Confidence 54432 345677888899999888753
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-35 Score=300.97 Aligned_cols=347 Identities=22% Similarity=0.235 Sum_probs=278.0
Q ss_pred CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcC-chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858 93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEI-PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL 168 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L 168 (523)
++|++|+|++|.+++..|.. +++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+. +|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc-cCCEE
Confidence 78999999999999887754 899999999999997554 67899999999999999999977799999998 89999
Q ss_pred EccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCcc-ccCCCCCcEEECCCCcCCCCchHhhhcC--CCCCeEEec
Q 009858 169 DLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRS-LLNCANLQVLDLGNNKMKDTFPHWLGTL--RELQVLILR 243 (523)
Q Consensus 169 ~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~ 243 (523)
++++|.+++..+. .|..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999999875444 4899999999999999999887776 8999999999999999998888888876 789999999
Q ss_pred cccccCcCCCccc------cccCCCCcEEeccCccCCCCCchHHHhcc--ccccccccccccccccccCccc--------
Q 009858 244 SNKFYGHLRDYEA------DYYFSKLRILDLSNNNFTGSLPAMFFKNM--KAMTDIGEAADENKSKYMGETY-------- 307 (523)
Q Consensus 244 ~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~l~~~~~~~~~~~~~~~~-------- 307 (523)
+|.+.+..+.... ...+++|++|++++|.+.+..|..+...+ +.++.+++..+...........
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 9998876554432 13467899999999999877776654432 6677776665532221111000
Q ss_pred -----cccceEEE-----ecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCC
Q 009858 308 -----YEDSVTLI-----IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD 377 (523)
Q Consensus 308 -----~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 377 (523)
......+. +.......+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..|..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 00011111 11222344566889999999999999888888999999999999999999888888999999
Q ss_pred CCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858 378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~ 440 (523)
|++|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+|+..|.+|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999888999999999999999999999654433 456677888888888877766
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-35 Score=315.82 Aligned_cols=370 Identities=21% Similarity=0.230 Sum_probs=190.2
Q ss_pred HHHHHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---C
Q 009858 39 FVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---S 113 (523)
Q Consensus 39 ~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~ 113 (523)
.+..+..|++|++++|.+.++... .+..+..+. ++..+.+.......+..+++|++|++++|.+++..+.. +
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDK---TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred HHhcccCcCEEECCCCccCccChh---hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccc
Confidence 345566777777777766543332 222223333 33333444444455666777777777777777665543 6
Q ss_pred CCCcEEEccCCcCCCcCchhhh--CCCCcCEEEccCCcCCccChhh----------------------------------
Q 009858 114 SNMRVFLISNNKFIGEIPRLIC--NTSTIEILDLSNNSLSGTIPEC---------------------------------- 157 (523)
Q Consensus 114 ~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~---------------------------------- 157 (523)
++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 6777777777776655554443 3455666666666555433332
Q ss_pred -----------------Hhhcc-cCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCcccc-----------
Q 009858 158 -----------------IGNFS-KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL----------- 208 (523)
Q Consensus 158 -----------------l~~l~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~----------- 208 (523)
+..+. ++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+.
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 22222 1377777777777766666777777777777777776655444333
Q ss_pred ----------------------CCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc-------------------
Q 009858 209 ----------------------NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF------------------- 247 (523)
Q Consensus 209 ----------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l------------------- 247 (523)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~ 384 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCc
Confidence 344455555555555555555555555555555555432
Q ss_pred ---------cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCc-cccccceEEEec
Q 009858 248 ---------YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTLIIK 317 (523)
Q Consensus 248 ---------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 317 (523)
.+..+..+ ..+++|+.|++++|.+.+.+|...+.+++.|+.++++.+......... ........+...
T Consensus 385 ~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 385 ILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp EEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred eEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 11111111 335556666666666555555455555666666555554321110000 000000000000
Q ss_pred -------chhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCC--------ccccCCCCCCEEe
Q 009858 318 -------RQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP--------SSLGDLTDLESLD 382 (523)
Q Consensus 318 -------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~ 382 (523)
......+..+++|+.|++++|.+++..+..+..+++|++|+|++|++++..+ ..|..+++|++|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 0111223345566666666666665555555555556666665555553211 1234444555555
Q ss_pred CCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 383 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
|++|+++...+..|.++++|+.|++++|+++
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 5555554333334444444555555444444
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.1e-36 Score=316.31 Aligned_cols=312 Identities=20% Similarity=0.284 Sum_probs=251.2
Q ss_pred CCCCcEEEccCCcCCCc-----------------Cchhhh--CCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858 113 SSNMRVFLISNNKFIGE-----------------IPRLIC--NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN 173 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n 173 (523)
+++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..++.+. +|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCC
Confidence 89999999999999985 899988 999999999999999999999999998 8999999999
Q ss_pred c-ccc-cCCCCCCCC------CCCCEEECcCCCCCCCCCc--cccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858 174 R-FHG-TIPETFPKG------NNLTTLNFNGNELVGSVPR--SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243 (523)
Q Consensus 174 ~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (523)
+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+.++++|++|++++|.+.+.+| .++.+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 988 788877776 89999999999999 8888 89999999999999999998888 89999999999999
Q ss_pred cccccCcCCCccccccCCC-CcEEeccCccCCCCCchHHHhcc--cccccccccccccccc---ccCc---c--ccccce
Q 009858 244 SNKFYGHLRDYEADYYFSK-LRILDLSNNNFTGSLPAMFFKNM--KAMTDIGEAADENKSK---YMGE---T--YYEDSV 312 (523)
Q Consensus 244 ~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l--~~L~~l~~~~~~~~~~---~~~~---~--~~~~~~ 312 (523)
+|.+. .+|..+ ..+++ |++|++++|.++ .+|.. +..+ ++|+.++++.+..... .++. . ......
T Consensus 362 ~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 362 YNQIT-EIPANF--CGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp SSEEE-ECCTTS--EEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred CCccc-cccHhh--hhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 99988 555554 66888 999999999998 78864 3443 4789999887765431 1110 0 001111
Q ss_pred EE-----EecchhHHHHHhhcccccccCCCCccCcCcchh-hcCc-------ccCCeeeCcCCcccccCCcccc--CCCC
Q 009858 313 TL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPEL-MGKL-------HSLRLLNLSQNILSGNIPSSLG--DLTD 377 (523)
Q Consensus 313 ~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~ 377 (523)
.+ .+.......+..+++|++|+|++|.++ .+|.. +... ++|++|+|++|+++ .+|..+. .+++
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 11 122334455666889999999999998 55543 3322 38999999999998 6787776 8999
Q ss_pred CCEEeCCCCcCCCcCChhhcCCCCCCeEEC------CCCcCcccCCCC-CCCCcccCCccCCCCC
Q 009858 378 LESLDLSSNVLDGVIPRELTRLTFLAVLNL------SRNKLEGRIPEG-NQFATFSSDSYGGNLG 435 (523)
Q Consensus 378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~p~~-~~~~~~~~~~~~gn~~ 435 (523)
|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..+..+..+.+.+|..
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 9999999999997 7888889999999999 567788888864 3456667777777754
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-35 Score=314.11 Aligned_cols=385 Identities=17% Similarity=0.108 Sum_probs=244.0
Q ss_pred HhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEE
Q 009858 44 LFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFL 120 (523)
Q Consensus 44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~ 120 (523)
..++.|+++.+.+.++.......+.. ....++..+.+.......|..+++|++|+|++|.+++..|.. +++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCcc-CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 45667777777665544322222222 122233334444455555666677777777777776665543 66777777
Q ss_pred ccCCcCCCcCchhhhCCCCcCEEEccCCcCCc-cChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC----EEECc
Q 009858 121 ISNNKFIGEIPRLICNTSTIEILDLSNNSLSG-TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT----TLNFN 195 (523)
Q Consensus 121 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~L~ 195 (523)
+++|.+++..+..|+++++|++|++++|.+++ .+|..++.+. +|++|++++|.+++..|..|+.+.+|+ +|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 77777766665667777777777777777664 4566777666 677777777777766666666555443 67777
Q ss_pred CCCCCCCCCccccCCCCCcEEECCCCcCCC--------------------------------------------------
Q 009858 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKD-------------------------------------------------- 225 (523)
Q Consensus 196 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-------------------------------------------------- 225 (523)
+|.+.+..+..+... +|+.|++++|.+.+
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 766654333322221 34444444433210
Q ss_pred ------------------------------CchHhhhcCCCCCeEEeccccccCcCCCc------------------ccc
Q 009858 226 ------------------------------TFPHWLGTLRELQVLILRSNKFYGHLRDY------------------EAD 257 (523)
Q Consensus 226 ------------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------------~~~ 257 (523)
.+| .+..+++|++|++++|.+ +.+|.. ...
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred cccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhh
Confidence 111 233334455555555544 222211 112
Q ss_pred ccCCCCcEEeccCccCCCCC-chHHHhccccccccccccccccccccCccccccceEEE-----ecchhH-HHHHhhccc
Q 009858 258 YYFSKLRILDLSNNNFTGSL-PAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI-----IKRQEV-KLMKILTIF 330 (523)
Q Consensus 258 ~~l~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~L 330 (523)
..+++|++|++++|.+++.. ....+..++.|+.++++.+........-........+. +..... ..+..+++|
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 45788999999999887442 13457889999999998775433211111111111111 112222 456678999
Q ss_pred ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccc-cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG-NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409 (523)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 409 (523)
++|++++|.+++..|..+..+++|++|++++|.+++ .+|..++.+++|++|+|++|++++..|..+..+++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 999999999998889999999999999999999997 4788999999999999999999999999999999999999999
Q ss_pred CcCcccCCCC-CCCCcccCCccCCC
Q 009858 410 NKLEGRIPEG-NQFATFSSDSYGGN 433 (523)
Q Consensus 410 N~l~~~~p~~-~~~~~~~~~~~~gn 433 (523)
|++++.+|.. ..+..+..+.+.+|
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CcCCCcCHHHccCCCcCCEEECCCC
Confidence 9999876653 23444444444444
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-35 Score=316.45 Aligned_cols=328 Identities=15% Similarity=0.185 Sum_probs=234.8
Q ss_pred CCCCCCCCccEEEccCCCCcc-----------------CCCCC-----CCCCcEEEccCCcCCCcCchhhhCCCCcCEEE
Q 009858 87 NKKLPWKNLEYLDLRSNLLQG-----------------PVPAP-----SSNMRVFLISNNKFIGEIPRLICNTSTIEILD 144 (523)
Q Consensus 87 ~~~~~~~~L~~L~L~~n~l~~-----------------~~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 144 (523)
..+..+++|++|+|++|.+++ .+|.. +++|++|+|++|.+.+.+|..|.++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 345568899999999999988 24433 68899999999998888998899999999999
Q ss_pred ccCCc-CCc-cChhhHhhcc------cCCcEEEccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 009858 145 LSNNS-LSG-TIPECIGNFS------KSLRVLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ 214 (523)
Q Consensus 145 L~~n~-l~~-~~p~~l~~l~------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 214 (523)
|++|+ +++ .+|..++.+. ++|++|++++|.++ .+|. .|.++++|++|++++|.++ .+| .+..+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 99998 887 7888887763 36999999999888 7777 7888888899999888887 677 788888888
Q ss_pred EEECCCCcCCCCchHhhhcCCC-CCeEEeccccccCcCCCccccccCC-----------------------------CCc
Q 009858 215 VLDLGNNKMKDTFPHWLGTLRE-LQVLILRSNKFYGHLRDYEADYYFS-----------------------------KLR 264 (523)
Q Consensus 215 ~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~-----------------------------~L~ 264 (523)
.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.....+ +|+
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 8888888887 67777888888 888888888876 444433222222 444
Q ss_pred EEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCc
Q 009858 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI 344 (523)
Q Consensus 265 ~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 344 (523)
.|++++|.++ .+|..++..++.|+.|+++.+... .++...+... ......+++|+.|+|++|.++ .+
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~---------~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--SIPENSLKPK---------DGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCT---------TSCCTTGGGCCEEECCSSCCC-CC
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--ccChHHhccc---------cccccccCCccEEECCCCCCc-cc
Confidence 5555555554 455555555555555555544322 1111100000 000112447888888888888 67
Q ss_pred chhhc--CcccCCeeeCcCCcccccCCccccCCCCCCEEeCCC------CcCCCcCChhhcCCCCCCeEECCCCcCcccC
Q 009858 345 PELMG--KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS------NVLDGVIPRELTRLTFLAVLNLSRNKLEGRI 416 (523)
Q Consensus 345 ~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 416 (523)
|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence 77776 78888888888888885 677778888888888865 677777888888888888888888888 577
Q ss_pred CCCCCCCcccCCccCCCCC
Q 009858 417 PEGNQFATFSSDSYGGNLG 435 (523)
Q Consensus 417 p~~~~~~~~~~~~~~gn~~ 435 (523)
|.. ....+..+.+.+|+.
T Consensus 822 p~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 822 DEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CSC-CCSSSCEEECCSCTT
T ss_pred CHh-hcCCCCEEECCCCCC
Confidence 765 234566666666653
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=307.70 Aligned_cols=182 Identities=20% Similarity=0.212 Sum_probs=125.9
Q ss_pred cCCCCcEEeccCccCCCCCc-hHHHhccccccccccccccccccccCccccccceEEE-----ecch-hHHHHHhhcccc
Q 009858 259 YFSKLRILDLSNNNFTGSLP-AMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI-----IKRQ-EVKLMKILTIFT 331 (523)
Q Consensus 259 ~l~~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~L~ 331 (523)
.+++|++|++++|.+++... ...+.+++.|+.++++.+........-........+. +... ....+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 35566666666666553220 2335566667766666553322110000011111111 1111 113456678999
Q ss_pred cccCCCCccCcCcchhhcCcccCCeeeCcCCccc-ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCC
Q 009858 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS-GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410 (523)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 410 (523)
+|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999998888888999999999999999987 578888999999999999999999888999999999999999999
Q ss_pred cCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858 411 KLEGRIPEG-NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 411 ~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~ 440 (523)
++++..|.. ..+..+....+.+|+..|.+|
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999776653 456677777788887776654
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-34 Score=304.79 Aligned_cols=375 Identities=19% Similarity=0.167 Sum_probs=226.8
Q ss_pred cccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcC
Q 009858 54 CVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEI 130 (523)
Q Consensus 54 c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~ 130 (523)
|...++..+|.. +.......++..+.+.......|..+++|++|+|++|.+++..|.. +++|++|++++|.+++..
T Consensus 19 c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 19 CENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp CTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC
Confidence 444444445532 2223444455555555555555666666777777776666655543 666667777766666666
Q ss_pred chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCC
Q 009858 131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210 (523)
Q Consensus 131 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 210 (523)
|..|.++++|++|++++|.+++..|..+..+. +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 66666666677777776666643355566665 56666666666665433344446666666666666665555555555
Q ss_pred CCCc--EEECCCCcCC----------------------------------------------------------------
Q 009858 211 ANLQ--VLDLGNNKMK---------------------------------------------------------------- 224 (523)
Q Consensus 211 ~~L~--~L~L~~n~l~---------------------------------------------------------------- 224 (523)
++|+ .|++++|.+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 5555 4555555443
Q ss_pred -----------CCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccc
Q 009858 225 -----------DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE 293 (523)
Q Consensus 225 -----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~ 293 (523)
+..+..|..+++|++|++++|.+.. +|..+ ..+++|++|++++|.+. .++...+..+++|+.+++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGL--VGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSC--CSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEEC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CChhh--cccccCCEEECccCCcC-cCchhhhhccCcCCEEEC
Confidence 3333345566677777777776653 33333 45677777777777776 333344666777777776
Q ss_pred ccccccccccCc--cccccceEEEe-----cchh--HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcc
Q 009858 294 AADENKSKYMGE--TYYEDSVTLII-----KRQE--VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL 364 (523)
Q Consensus 294 ~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 364 (523)
.++......... ........+.. .... ...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 665432111000 00011111111 1111 22345577888888888888777777888888888888888888
Q ss_pred cccCCc-cccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc-CCCC---CCCCcccCCccCCCC
Q 009858 365 SGNIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR-IPEG---NQFATFSSDSYGGNL 434 (523)
Q Consensus 365 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~---~~~~~~~~~~~~gn~ 434 (523)
++..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. +|.. ..+..+..+.+.+|.
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 766554 477888888888888888887788888888888888888888763 2322 233445555555553
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-35 Score=285.66 Aligned_cols=259 Identities=29% Similarity=0.506 Sum_probs=211.1
Q ss_pred CCCcEEEccCCcCCC--cCchhhhCCCCcCEEEccC-CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858 114 SNMRVFLISNNKFIG--EIPRLICNTSTIEILDLSN-NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT 190 (523)
Q Consensus 114 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (523)
.+++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..++.+. +|++|++++|.+++..|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578888888888887 7788888888888888884 888778888888887 788888888888877887788888888
Q ss_pred EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCC-CCCeEEeccccccCcCCCccccccCCCCcEEecc
Q 009858 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLR-ELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269 (523)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 269 (523)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+..+..+ ..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~---------- 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--AN---------- 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GG----------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hC----------
Confidence 888888888777777788888888888888887767777776665 66666666655543333222 11
Q ss_pred CccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhc
Q 009858 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMG 349 (523)
Q Consensus 270 ~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 349 (523)
+. |+.|++++|.+++..|..+.
T Consensus 197 ---------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 197 ---------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp ---------------------------------------------------------CC-CSEEECCSSEEEECCGGGCC
T ss_pred ---------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHh
Confidence 23 67777778888777888888
Q ss_pred CcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCc
Q 009858 350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDS 429 (523)
Q Consensus 350 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 429 (523)
.+++|+.|+|++|.+++.+|. +..+++|++|+|++|.+++.+|..+..+++|++|++++|+++|.+|....+..+....
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 999999999999999876665 8889999999999999999999999999999999999999999999988889999999
Q ss_pred cCCCCCCCCCCCCCCC
Q 009858 430 YGGNLGLCGFPLSKNC 445 (523)
Q Consensus 430 ~~gn~~lc~~~~~~~c 445 (523)
+.+|+.+||.|+. .|
T Consensus 298 l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 298 YANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCSSSEEESTTSS-CC
T ss_pred hcCCCCccCCCCC-CC
Confidence 9999999998876 46
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=324.59 Aligned_cols=357 Identities=21% Similarity=0.218 Sum_probs=188.5
Q ss_pred CCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchh--hhCCCCcCEEEccCCcCCccCh-hhHh
Q 009858 86 GNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRL--ICNTSTIEILDLSNNSLSGTIP-ECIG 159 (523)
Q Consensus 86 ~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~ 159 (523)
...|..+++|++|+|++|.+++..|.. +++|++|++++|.+++..|.. |.++++|++|++++|.+++..+ ..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 344555666666666666666555543 566666666666666544433 5666666666666666654333 3455
Q ss_pred hcccCCcEEEccCCcccccCCCCCCCC--CCCCEEECcCCCCCCCCCccccCCCC------CcEEECCCCcCCC------
Q 009858 160 NFSKSLRVLDLRKNRFHGTIPETFPKG--NNLTTLNFNGNELVGSVPRSLLNCAN------LQVLDLGNNKMKD------ 225 (523)
Q Consensus 160 ~l~~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~------ 225 (523)
.+. +|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++ |+.|++++|.+.+
T Consensus 146 ~L~-~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 146 KLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp TCS-SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred hCC-CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 555 56666666666665555555544 55666665555555444433333332 5555555554433
Q ss_pred --------------------------------------------------------CchHhhhcCCCCCeEEeccccccC
Q 009858 226 --------------------------------------------------------TFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 226 --------------------------------------------------------~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
..|..+..+++|+.|++++|.+.+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 333334444444444444444444
Q ss_pred cCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCc-cccccceEEEecchhHHHHHhhc
Q 009858 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTLIIKRQEVKLMKILT 328 (523)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 328 (523)
..+..+ ..+++|++|++++|.+++ ++...+.++++|+.++++.+......... ........+............++
T Consensus 305 ~~~~~~--~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 381 (844)
T 3j0a_A 305 IADEAF--YGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381 (844)
T ss_dssp ECTTTT--TTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCC
T ss_pred CChHHh--cCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCC
Confidence 433333 334555555555555542 22223444555555555444321110000 00001111111110000011122
Q ss_pred ccc--------------------cccCCCCccCcCc-chhhcCcccCCeeeCcCCccccc--------------------
Q 009858 329 IFT--------------------TIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNILSGN-------------------- 367 (523)
Q Consensus 329 ~L~--------------------~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-------------------- 367 (523)
+|+ .|++++|.+++.. +..+..+++|+.|+|++|++++.
T Consensus 382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 233 3333333333211 12234667777777777766532
Q ss_pred ----------CCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCC---
Q 009858 368 ----------IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL--- 434 (523)
Q Consensus 368 ----------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~--- 434 (523)
.+..|..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++..|.... ..+..+.+.+|.
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 224467788899999999999988888899999999999999999965554322 444444444442
Q ss_pred ------------CCCCCCCCCCCCC
Q 009858 435 ------------GLCGFPLSKNCSN 447 (523)
Q Consensus 435 ------------~lc~~~~~~~c~~ 447 (523)
.+.++|+.|.|..
T Consensus 541 ~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 541 PNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred CChhHhCCcCEEEecCCCccccccc
Confidence 2346789999963
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-34 Score=299.49 Aligned_cols=363 Identities=18% Similarity=0.228 Sum_probs=245.0
Q ss_pred hhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC
Q 009858 71 ASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147 (523)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (523)
....++..+.+.......+..+++|++|++++|.+++..|.. +++|++|++++|.+++..+..|.++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 344455555555555566777888888888888888777644 77888888888888877777788888888888888
Q ss_pred CcCCc-cChhhHhhcccCCcEEEccCCc-ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC
Q 009858 148 NSLSG-TIPECIGNFSKSLRVLDLRKNR-FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD 225 (523)
Q Consensus 148 n~l~~-~~p~~l~~l~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (523)
|.+++ ..|..+..+. +|++|++++|. +....+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 108 n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~- 185 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA- 185 (549)
T ss_dssp CCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-
T ss_pred CcccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-
Confidence 88874 3456677776 78888888887 44334457888888888888888888777878877777777777777765
Q ss_pred CchHhh-hcCCCCCeEEeccccccCcC--CCcc-----------------------------------------------
Q 009858 226 TFPHWL-GTLRELQVLILRSNKFYGHL--RDYE----------------------------------------------- 255 (523)
Q Consensus 226 ~~~~~l-~~l~~L~~L~l~~n~l~~~~--~~~~----------------------------------------------- 255 (523)
.+|..+ ..+++|++|++++|.+.+.. +...
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 344433 45777777777777665521 0000
Q ss_pred ---------------------------------------ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccc
Q 009858 256 ---------------------------------------ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296 (523)
Q Consensus 256 ---------------------------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~ 296 (523)
.....++|+.|++++|.+. .+|..++..+++|+.++++.+
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 0011245677777777775 678777788889999988877
Q ss_pred cccccccC----ccccccceEEEe-----cchh--HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858 297 ENKSKYMG----ETYYEDSVTLII-----KRQE--VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365 (523)
Q Consensus 297 ~~~~~~~~----~~~~~~~~~~~~-----~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 365 (523)
........ .........+.. .... ...+..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 65432100 011111111111 1111 244667889999999999988 67777888888888888888876
Q ss_pred ccCCccc------------------cCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCccc
Q 009858 366 GNIPSSL------------------GDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFS 426 (523)
Q Consensus 366 ~~~p~~~------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~ 426 (523)
+ +|..+ ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+.
T Consensus 424 ~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 424 V-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp C-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred c-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 3 33221 25677778888888777 4444 356778888888888888766642 4555666
Q ss_pred CCccCCCCCCCCCC
Q 009858 427 SDSYGGNLGLCGFP 440 (523)
Q Consensus 427 ~~~~~gn~~lc~~~ 440 (523)
...+.+|+..|++|
T Consensus 501 ~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 501 KIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCccCCCc
Confidence 67777777766654
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9e-35 Score=305.41 Aligned_cols=357 Identities=19% Similarity=0.217 Sum_probs=222.4
Q ss_pred HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC---CCCCC
Q 009858 40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA---PSSNM 116 (523)
Q Consensus 40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L 116 (523)
+..+.+|++|++++|.+.++.......+.. ....++..+.+.......|..+++|++|++++|.+++..+. .+++|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchh-CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 444556667777777655543322222211 22223333334444445566677777777777777655442 26777
Q ss_pred cEEEccCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCC----cEEEccCCcccccCCCCC--------
Q 009858 117 RVFLISNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL----RVLDLRKNRFHGTIPETF-------- 183 (523)
Q Consensus 117 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L----~~L~L~~n~l~~~~p~~~-------- 183 (523)
++|++++|.+.+ .+|..|.++++|++|++++|.+++..|..+..+. +| ++|++++|.+++..|..|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 777777777765 3567777777777777777777755566666665 56 677777776654443332
Q ss_pred -------------------------------------------------------------------------CCCCCCC
Q 009858 184 -------------------------------------------------------------------------PKGNNLT 190 (523)
Q Consensus 184 -------------------------------------------------------------------------~~l~~L~ 190 (523)
..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 2234555
Q ss_pred EEECcCCCCCCCCCccccC------------------------------------------CCCCcEEECCCCcCCCCc-
Q 009858 191 TLNFNGNELVGSVPRSLLN------------------------------------------CANLQVLDLGNNKMKDTF- 227 (523)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~------------------------------------------l~~L~~L~L~~n~l~~~~- 227 (523)
+|++++|.+. .+|..+.. +++|++|++++|.+.+..
T Consensus 286 ~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 286 SFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred EEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 5555555544 23333332 333333444443333221
Q ss_pred -hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcc
Q 009858 228 -PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306 (523)
Q Consensus 228 -~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 306 (523)
|..+..+++|++|++++|.+.+..+. + ..+++|++|++++|.+.+..|...+.++++|+.++++.+...
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------- 434 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------- 434 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-E--ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-------
T ss_pred ccccccccCccCEEECCCCcccccccc-c--cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-------
Confidence 33444444444444444444332222 1 334455555555555443333333444555555554433211
Q ss_pred ccccceEEEecchhHHHHHhhcccccccCCCCccC-cCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCC
Q 009858 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFH-GEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385 (523)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 385 (523)
......+..+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 435 -----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 435 -----------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp -----------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -----------ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 112234456899999999999997 57889999999999999999999988899999999999999999
Q ss_pred CcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC
Q 009858 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420 (523)
Q Consensus 386 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 420 (523)
|++++.++..|..+++|+.|++++|++++.+|...
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99999988899999999999999999999988743
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-34 Score=306.53 Aligned_cols=370 Identities=20% Similarity=0.215 Sum_probs=223.6
Q ss_pred HHHHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CC
Q 009858 40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SS 114 (523)
Q Consensus 40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~ 114 (523)
+..+.+|++|+++.|.+.+... ..+..+..+. ++..+.+.......|..+++|++|++++|.+++..+.. ++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCT---THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HhCCCcCcEEECCCCccCccCH---HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 5556778888888887665433 3333434343 33444455555666888999999999999998877654 88
Q ss_pred CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhh--cccCCcEEEccCCcccccCCCCCCCC------
Q 009858 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN--FSKSLRVLDLRKNRFHGTIPETFPKG------ 186 (523)
Q Consensus 115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~~L~~L~L~~n~l~~~~p~~~~~l------ 186 (523)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. +. +|++|++++|.+++..|..|..+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-EESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc-cccEEECCCCcccccChhhhhhhhhhhhh
Confidence 9999999999999888888999999999999999998666666543 34 78889988888876666544322
Q ss_pred ---------------------CCCCEEECcCCCCCCCCCccccCCCC--CcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858 187 ---------------------NNLTTLNFNGNELVGSVPRSLLNCAN--LQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243 (523)
Q Consensus 187 ---------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (523)
++|++|++++|.+.+..|..+.+++. |++|++++|.+.+..|..++.+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 23344444444444444444444332 5555555544444444444444444444444
Q ss_pred cccccCcCCCcc-------------------------------ccccCCCCcEEeccCccCCCCCchHHHhccccccccc
Q 009858 244 SNKFYGHLRDYE-------------------------------ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIG 292 (523)
Q Consensus 244 ~n~l~~~~~~~~-------------------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~ 292 (523)
+|.+.+..+..+ ....+++|++|++++|.+.+ ++...+.++++|+.++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLS 359 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTTTTTCTTCCEEE
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhHhccccCCcEEE
Confidence 444433322211 22457788888888888874 4555677888888888
Q ss_pred cccccccccccCccccc-----cceEE-----EecchhHHHHHhhcccccccCCCCccCcCcc-hhhcCcccCCeeeCcC
Q 009858 293 EAADENKSKYMGETYYE-----DSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQ 361 (523)
Q Consensus 293 ~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 361 (523)
++.+......++...+. ....+ .+.......+..+++|+.|++++|.+++.+| ..+..+++|++|++++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 77654221111110000 00000 0111112233445555666666665554333 4455555555555555
Q ss_pred Ccccc--------------------------cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 362 NILSG--------------------------NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 362 n~l~~--------------------------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
|++.+ .+|..|..+++|++|+|++|++++..+..|.++++|++|++++|++++
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 55443 445566666777777777777776666666777777777777777764
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.2e-34 Score=301.97 Aligned_cols=384 Identities=20% Similarity=0.208 Sum_probs=251.1
Q ss_pred ccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCc
Q 009858 53 TCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGE 129 (523)
Q Consensus 53 ~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~ 129 (523)
+|...+++.+|.. ++..+...++..+.+..+....|..+++|++|+|++|+|++..+.. +++|++|+|++|++++.
T Consensus 37 ~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 37 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp ECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 5777777777743 3334556667777777777777778888888888888887766643 77888888888888776
Q ss_pred CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccccc-CCCCCCCCCCCCEEECcCCCCCCCCCcccc
Q 009858 130 IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGT-IPETFPKGNNLTTLNFNGNELVGSVPRSLL 208 (523)
Q Consensus 130 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 208 (523)
.+.+|.++++|++|++++|++++..+..++.+. +|++|++++|.+++. .|..+..+++|++|++++|++++..+..+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 667788888888888888888744444567776 788888888887643 456677778888888888777654444332
Q ss_pred CCCC----------------------------------------------------------------------------
Q 009858 209 NCAN---------------------------------------------------------------------------- 212 (523)
Q Consensus 209 ~l~~---------------------------------------------------------------------------- 212 (523)
.+.+
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 2211
Q ss_pred -------------------------------------------------------CcEEECCCCcCCCCch---------
Q 009858 213 -------------------------------------------------------LQVLDLGNNKMKDTFP--------- 228 (523)
Q Consensus 213 -------------------------------------------------------L~~L~L~~n~l~~~~~--------- 228 (523)
|+.|++.+|.+.+..+
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 1111111111110000
Q ss_pred ----------HhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccc
Q 009858 229 ----------HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298 (523)
Q Consensus 229 ----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~ 298 (523)
.....+++|+.|+++.|.+............+.+|+.+++..+.... ++. .+..++.++.+++..+..
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~-~~~~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNL 432 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECS-CCTTCTTCCEEECTTSEE
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccc-cccccccccchhhhhccc
Confidence 00113455666666666654322222222445667777776665542 221 134455555555443322
Q ss_pred cccccCccc--cccceEE-----EecchhHHHHHhhcccccccCCCCccC-cCcchhhcCcccCCeeeCcCCcccccCCc
Q 009858 299 KSKYMGETY--YEDSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFH-GEIPELMGKLHSLRLLNLSQNILSGNIPS 370 (523)
Q Consensus 299 ~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 370 (523)
......... ....... .........+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|.
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~ 512 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH
Confidence 111100000 0000000 111122334455789999999999754 45688899999999999999999999999
Q ss_pred cccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC-CC-CcccCCccCCCCCCCCCC
Q 009858 371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN-QF-ATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 371 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~-~~~~~~~~~gn~~lc~~~ 440 (523)
.|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|... .+ .++..+.+.+||+.|+|.
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999999999999999999999999998888643 23 467778889999888764
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=296.90 Aligned_cols=363 Identities=21% Similarity=0.227 Sum_probs=259.0
Q ss_pred HhhhhhcCCccccccccCCCccchhhhhhh--ccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCCcEEEc
Q 009858 44 LFLELLAGSTCVVHGLQSHPRNTLKDYASA--AEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLI 121 (523)
Q Consensus 44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L 121 (523)
..+++|++++|.+.++.. ..+..+..+ .++..+.+.......+..+++|++|+|++|.+++..+..+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT---SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCH---HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEEC
T ss_pred ccccEEECCCCcccccCh---hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEec
Confidence 567788888887665332 223333333 344444455555566777888889999888888655556888889999
Q ss_pred cCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCC--cEEEccCCcc--cccCCCCCCCCC---------
Q 009858 122 SNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL--RVLDLRKNRF--HGTIPETFPKGN--------- 187 (523)
Q Consensus 122 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L--~~L~L~~n~l--~~~~p~~~~~l~--------- 187 (523)
++|.+++ ..|..|+++++|++|++++|.+++ ..+..+. +| ++|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~-~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA-HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT-TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccc-cceeeEEEeecccccccccccccccccccceEEEEec
Confidence 9888886 467888888889999998888874 3455555 67 8888888888 566666665533
Q ss_pred --------------------------------------------------------------------------CCCEEE
Q 009858 188 --------------------------------------------------------------------------NLTTLN 193 (523)
Q Consensus 188 --------------------------------------------------------------------------~L~~L~ 193 (523)
+|++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 455555
Q ss_pred CcCCCCCCCCCccc-----cCCCCCcEEECCCCcCCCCch-HhhhcC---CCCCeEEeccccccCcCCCccccccCCCCc
Q 009858 194 FNGNELVGSVPRSL-----LNCANLQVLDLGNNKMKDTFP-HWLGTL---RELQVLILRSNKFYGHLRDYEADYYFSKLR 264 (523)
Q Consensus 194 L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 264 (523)
+++|++.+.+|..+ .++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+... ...+++|+
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~ 327 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFL 327 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC----CSSCCCCC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc----hhhCCccc
Confidence 55555555566555 5666666666666665 233 344433 567777777776543221 14578999
Q ss_pred EEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCc
Q 009858 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI 344 (523)
Q Consensus 265 ~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 344 (523)
+|++++|.+++.+|.. +..++.|+.++++.+..... ......+..+++|++|++++|.+++.+
T Consensus 328 ~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKEL----------------SKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp EEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBH----------------HHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred EEEeECCccChhhhhh-hccCCCCCEEEccCCccCcc----------------ccchHHHhhCCCCCEEECCCCcCCccc
Confidence 9999999998766644 67888898888876643210 011234566899999999999999756
Q ss_pred ch-hhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC--CC
Q 009858 345 PE-LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG--NQ 421 (523)
Q Consensus 345 ~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~ 421 (523)
|. .+..+++|++|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. ..
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 466 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc
Confidence 65 478899999999999999888777664 79999999999999 67777779999999999999999 56653 34
Q ss_pred CCcccCCccCCCCCCCCCC
Q 009858 422 FATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 422 ~~~~~~~~~~gn~~lc~~~ 440 (523)
+..+....+.+|+..|.++
T Consensus 467 l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CCcccEEECcCCCCcccCC
Confidence 5667777788888777654
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-33 Score=302.74 Aligned_cols=331 Identities=20% Similarity=0.253 Sum_probs=258.6
Q ss_pred CCccEEEccC--CCCccCCCCC--CCCCcEEEccCCcCCC-----------------cCchhhh--CCCCcCEEEccCCc
Q 009858 93 KNLEYLDLRS--NLLQGPVPAP--SSNMRVFLISNNKFIG-----------------EIPRLIC--NTSTIEILDLSNNS 149 (523)
Q Consensus 93 ~~L~~L~L~~--n~l~~~~~~~--~~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~ 149 (523)
..++.+.+.. |.+++.++.. +++|++|+|++|.+++ .+|..++ ++++|++|+|++|.
T Consensus 423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~ 502 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502 (876)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence 3444444443 7788887654 9999999999999998 3888877 99999999999999
Q ss_pred CCccChhhHhhcccCCcEEEccCCc-ccc-cCCCCC-------CCCCCCCEEECcCCCCCCCCCc--cccCCCCCcEEEC
Q 009858 150 LSGTIPECIGNFSKSLRVLDLRKNR-FHG-TIPETF-------PKGNNLTTLNFNGNELVGSVPR--SLLNCANLQVLDL 218 (523)
Q Consensus 150 l~~~~p~~l~~l~~~L~~L~L~~n~-l~~-~~p~~~-------~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L 218 (523)
+.+.+|..++.+. +|++|++++|+ +++ .+|..+ ..+++|++|++++|.+. .+|. .+.++++|++|++
T Consensus 503 l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 503 NMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 9999999999998 89999999998 887 677644 45569999999999999 8888 8999999999999
Q ss_pred CCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCC-CcEEeccCccCCCCCchHHHhccc--ccccccccc
Q 009858 219 GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK-LRILDLSNNNFTGSLPAMFFKNMK--AMTDIGEAA 295 (523)
Q Consensus 219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l~--~L~~l~~~~ 295 (523)
++|.+. .+| .++.+++|+.|++++|.+. .+|..+ ..+++ |+.|++++|.++ .+|.. +..+. .|+.++++.
T Consensus 581 s~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSY 653 (876)
T ss_dssp TTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCS
T ss_pred CCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcC
Confidence 999998 788 8999999999999999998 555554 56788 999999999998 77743 44444 488888887
Q ss_pred ccccccc--cCc--c--ccccceEE-----EecchhHHHHHhhcccccccCCCCccCcCcchhhcC--------cccCCe
Q 009858 296 DENKSKY--MGE--T--YYEDSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK--------LHSLRL 356 (523)
Q Consensus 296 ~~~~~~~--~~~--~--~~~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~ 356 (523)
+...... +.. . .......+ .+.......+..+++|+.|+|++|.++ .+|..+.. +++|++
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCE
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccE
Confidence 7653311 110 0 00011111 122344455567889999999999998 66654433 238999
Q ss_pred eeCcCCcccccCCcccc--CCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC------CcCcccCCCC-CCCCcccC
Q 009858 357 LNLSQNILSGNIPSSLG--DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR------NKLEGRIPEG-NQFATFSS 427 (523)
Q Consensus 357 L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~p~~-~~~~~~~~ 427 (523)
|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|.. ..+..+..
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 999999998 7788776 89999999999999997 677888999999999976 7788888854 34566667
Q ss_pred CccCCCCC
Q 009858 428 DSYGGNLG 435 (523)
Q Consensus 428 ~~~~gn~~ 435 (523)
+.+.+|..
T Consensus 811 L~Ls~N~L 818 (876)
T 4ecn_A 811 LQIGSNDI 818 (876)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 77777754
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.5e-33 Score=292.31 Aligned_cols=361 Identities=20% Similarity=0.236 Sum_probs=222.2
Q ss_pred hhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccC
Q 009858 47 ELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISN 123 (523)
Q Consensus 47 ~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~ 123 (523)
+.++++++.+.. +|.... ......++..+.+.......+..+++|++|+|++|.+++..|.. +++|++|++++
T Consensus 34 ~~l~ls~~~L~~---ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH---VPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS---CCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc---CCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 445555555443 332111 22333444445555555455566666777777777666665543 56666777777
Q ss_pred CcCCCcCchhhhCCCCcCEEEccCCcCCc-cChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCC--CEEECcCCCC-
Q 009858 124 NKFIGEIPRLICNTSTIEILDLSNNSLSG-TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNL--TTLNFNGNEL- 199 (523)
Q Consensus 124 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l- 199 (523)
|.++ .+|.. .+++|++|++++|.+++ .+|..++.+. +|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 6666 34433 56667777777776663 2345666665 677777776666542 33444444 6666666666
Q ss_pred -CCCCCccccCCC--------------------------CCcEEECCCCcC----------------------------C
Q 009858 200 -VGSVPRSLLNCA--------------------------NLQVLDLGNNKM----------------------------K 224 (523)
Q Consensus 200 -~~~~~~~l~~l~--------------------------~L~~L~L~~n~l----------------------------~ 224 (523)
++..|..+..+. +|+.|++++|.. .
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 444444443322 222333322210 0
Q ss_pred CC----chHhhhcCCCCCeEEeccccccCcCCCcc---------------------------------------------
Q 009858 225 DT----FPHWLGTLRELQVLILRSNKFYGHLRDYE--------------------------------------------- 255 (523)
Q Consensus 225 ~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------------------- 255 (523)
+. ++..+ ..++|++|++++|.+.+.+|...
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 00 00000 01244555555555443333221
Q ss_pred ------ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcc
Q 009858 256 ------ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329 (523)
Q Consensus 256 ------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (523)
....+++|++|++++|.+++.+|. .+.++++|+.++++.+...... .....+..+++
T Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~----------------~~~~~~~~l~~ 404 (562)
T 3a79_B 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFF----------------KVALMTKNMSS 404 (562)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTT----------------HHHHTTTTCTT
T ss_pred CcccccCccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcc----------------cchhhhcCCCC
Confidence 004578999999999999876664 4688899999988876433210 01123455789
Q ss_pred cccccCCCCccCcCcc-hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858 330 FTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408 (523)
Q Consensus 330 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 408 (523)
|++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence 9999999999997455 4578889999999999999887776554 78999999999998 556666699999999999
Q ss_pred CCcCcccCCCC--CCCCcccCCccCCCCCCCCCC
Q 009858 409 RNKLEGRIPEG--NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 409 ~N~l~~~~p~~--~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+|+++ .+|.. ..+..+....+.+|+..|+++
T Consensus 482 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999 56653 455667777788888777653
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7e-33 Score=276.71 Aligned_cols=309 Identities=19% Similarity=0.151 Sum_probs=245.8
Q ss_pred CCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcE
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRV 167 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~ 167 (523)
.+++++.|+++++.++..++.. +++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+. +|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCE
Confidence 3588899999999887766543 78999999999998877777888999999999999999866677778887 7999
Q ss_pred EEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
|++++|.++...+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999999865555678899999999999999877777888999999999999988754 256778889999988876
Q ss_pred cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh
Q 009858 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (523)
.+. ...++|+.|++++|.+. .+|.. ..++|+.+++.++..... ..+..+
T Consensus 199 ~~~-------~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--------------------~~l~~l 247 (390)
T 3o6n_A 199 STL-------AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--------------------AWLLNY 247 (390)
T ss_dssp SEE-------ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--------------------GGGGGC
T ss_pred ccc-------CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--------------------HHHcCC
Confidence 532 23467888888888886 44432 235667776665533221 234457
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL 407 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 407 (523)
++|++|++++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 899999999999998888999999999999999999985 5666788999999999999998 45667888999999999
Q ss_pred CCCcCcccCCCCCCCCcccCCccCCCCCCCC
Q 009858 408 SRNKLEGRIPEGNQFATFSSDSYGGNLGLCG 438 (523)
Q Consensus 408 s~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~ 438 (523)
++|+++.. | ...+..+..+.+.+|+..|.
T Consensus 326 ~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 326 DHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcccee-C-chhhccCCEEEcCCCCccch
Confidence 99999854 4 34566777788888877664
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=293.85 Aligned_cols=343 Identities=19% Similarity=0.207 Sum_probs=256.8
Q ss_pred HhhhhhcCCccccccccCCCccchhhhhhh--ccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCCcEEEc
Q 009858 44 LFLELLAGSTCVVHGLQSHPRNTLKDYASA--AEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLI 121 (523)
Q Consensus 44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L 121 (523)
..+++|++++|.+.++.. ..+..+..+ .++..+.+.......|..+++|++|++++|.++...+..+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM---PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCG---GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEEC
T ss_pred CCcCEEECCCCCccccCh---hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEEC
Confidence 689999999999876543 233333333 445555666676777889999999999999999766666999999999
Q ss_pred cCCcCCCc-CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCC--cEEEccCCcc--cccCCCCCCCCC---------
Q 009858 122 SNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL--RVLDLRKNRF--HGTIPETFPKGN--------- 187 (523)
Q Consensus 122 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L--~~L~L~~n~l--~~~~p~~~~~l~--------- 187 (523)
++|.+++. .|..|.++++|++|++++|.+++. .+..+. +| ++|++++|.+ ++..|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA-HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT-TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh-hceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 99999874 468999999999999999999853 344554 56 9999999988 666665554433
Q ss_pred ------------------------------------------------------------------------CCCEEECc
Q 009858 188 ------------------------------------------------------------------------NLTTLNFN 195 (523)
Q Consensus 188 ------------------------------------------------------------------------~L~~L~L~ 195 (523)
+|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 56666666
Q ss_pred CCCCCCCCCccc-----cCCCC--------------------------CcEEECCCCcCCCCchHhhhcCCCCCeEEecc
Q 009858 196 GNELVGSVPRSL-----LNCAN--------------------------LQVLDLGNNKMKDTFPHWLGTLRELQVLILRS 244 (523)
Q Consensus 196 ~n~l~~~~~~~l-----~~l~~--------------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 244 (523)
+|.+.+.+|..+ ..++. |++|++++|.+.... ....+++|++|++++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 666666666554 33333 444444444433211 015778899999999
Q ss_pred ccccCcCCCccccccCCCCcEEeccCccCCCCCch--HHHhccccccccccccccccccccCccccccceEEEecchhHH
Q 009858 245 NKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPA--MFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322 (523)
Q Consensus 245 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (523)
|.+.+..+..+ ..+++|++|++++|.+++ ++. ..+.++++|+.++++.+..... ++. .
T Consensus 363 n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~----------------~ 422 (562)
T 3a79_B 363 NVFTDSVFQGC--STLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSH-AYD----------------R 422 (562)
T ss_dssp SCCCTTTTTTC--CSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSC-CSS----------------C
T ss_pred Cccccchhhhh--cccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCc-cCh----------------h
Confidence 99888777666 678899999999999884 432 3477888999998887754321 111 1
Q ss_pred HHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCC
Q 009858 323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFL 402 (523)
Q Consensus 323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 402 (523)
.+..+++|++|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence 122368999999999999877776544 79999999999999 677777799999999999999996555459999999
Q ss_pred CeEECCCCcCcccCCC
Q 009858 403 AVLNLSRNKLEGRIPE 418 (523)
Q Consensus 403 ~~L~Ls~N~l~~~~p~ 418 (523)
+.|++++|++.+.+|.
T Consensus 500 ~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCEECCSCCBCCCHHH
T ss_pred CEEEecCCCcCCCcch
Confidence 9999999999987664
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6e-34 Score=275.13 Aligned_cols=248 Identities=26% Similarity=0.412 Sum_probs=209.4
Q ss_pred CCccEEEccCCCCcc--CCCCC---CCCCcEEEccC-CcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCc
Q 009858 93 KNLEYLDLRSNLLQG--PVPAP---SSNMRVFLISN-NKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLR 166 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~--~~~~~---~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~ 166 (523)
.++++|+|++|.+++ .+|.. +++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+. +|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCC
Confidence 589999999999998 67655 89999999995 999999999999999999999999999989999999998 899
Q ss_pred EEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCC-CCcEEECCCCcCCCCchHhhhcCCCCCeEEeccc
Q 009858 167 VLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA-NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245 (523)
Q Consensus 167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (523)
+|++++|.+++..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999999999999999999999999999989999999998 999999999999989999999987 999999999
Q ss_pred cccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHH
Q 009858 246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325 (523)
Q Consensus 246 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (523)
.+.+..+..+ ..+++|+.|++++|
T Consensus 208 ~l~~~~~~~~--~~l~~L~~L~L~~N------------------------------------------------------ 231 (313)
T 1ogq_A 208 MLEGDASVLF--GSDKNTQKIHLAKN------------------------------------------------------ 231 (313)
T ss_dssp EEEECCGGGC--CTTSCCSEEECCSS------------------------------------------------------
T ss_pred cccCcCCHHH--hcCCCCCEEECCCC------------------------------------------------------
Confidence 8876555444 34455555555555
Q ss_pred hhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405 (523)
Q Consensus 326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 405 (523)
.+++.+|. +..+++|++|+|++|.+++.+|..+..+++|++|+|++|++++.+|.. ..+++|+.+
T Consensus 232 -------------~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 232 -------------SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp -------------EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred -------------ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 44433333 556677888888888887777877888888888888888888777765 677788888
Q ss_pred ECCCCcCc
Q 009858 406 NLSRNKLE 413 (523)
Q Consensus 406 ~Ls~N~l~ 413 (523)
++++|+..
T Consensus 297 ~l~~N~~l 304 (313)
T 1ogq_A 297 AYANNKCL 304 (313)
T ss_dssp GTCSSSEE
T ss_pred HhcCCCCc
Confidence 88888743
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-33 Score=292.15 Aligned_cols=365 Identities=18% Similarity=0.187 Sum_probs=250.1
Q ss_pred HhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC---CCCCCcEEE
Q 009858 44 LFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA---PSSNMRVFL 120 (523)
Q Consensus 44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~ 120 (523)
..+++|++++|.+.+........+.. ....++..+.+.......+..+++|++|++++|.+++..+. .+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCc-ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 57889999999877654433233322 33344555556666667788899999999999999987765 289999999
Q ss_pred ccCCcCCCc-CchhhhCCCCcCEEEccCCcCCccCh-hhHhhcccCCcEEEccCCcccccCCCCCCCC------------
Q 009858 121 ISNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIP-ECIGNFSKSLRVLDLRKNRFHGTIPETFPKG------------ 186 (523)
Q Consensus 121 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l------------ 186 (523)
+++|.+++. .|..+.++++|++|++++|.+.+.+| ..+..+. +|++|++++|.+++..|..+..+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999863 56788999999999999998544665 5778887 89999999999998888887765
Q ss_pred ------------CCCCEEECcCCCCCCCC--Ccc-cc-------------------------------------------
Q 009858 187 ------------NNLTTLNFNGNELVGSV--PRS-LL------------------------------------------- 208 (523)
Q Consensus 187 ------------~~L~~L~L~~n~l~~~~--~~~-l~------------------------------------------- 208 (523)
++|++|++++|++.+.. +.. ..
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 45555666666555321 000 00
Q ss_pred --------------------------------------------CCCCCcEEECCCCcCCCCchHhh-hcCCCCCeEEec
Q 009858 209 --------------------------------------------NCANLQVLDLGNNKMKDTFPHWL-GTLRELQVLILR 243 (523)
Q Consensus 209 --------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~ 243 (523)
..++|+.|++++|.+. .+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 0123444444444443 344444 467888888888
Q ss_pred cccccCcCCCc-cccccCCCCcEEeccCccCCCCCch--HHHhccccccccccccccccccccCccccccceEEEecchh
Q 009858 244 SNKFYGHLRDY-EADYYFSKLRILDLSNNNFTGSLPA--MFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQE 320 (523)
Q Consensus 244 ~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
+|.+.+..+.. .....+++|++|++++|.++ .++. ..+..+++|+.++++.+.................+......
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC
Confidence 88776543211 11245778888888888887 3432 45777888888888877543211100011111111111110
Q ss_pred HHH--HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858 321 VKL--MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR 398 (523)
Q Consensus 321 ~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 398 (523)
... ...+++|++|++++|++++.+ ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|..+..
T Consensus 422 l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 422 IRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp CSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred cccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence 000 011257888888888887542 47889999999999998 6776 567999999999999999999999999
Q ss_pred CCCCCeEECCCCcCcccCCC
Q 009858 399 LTFLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 399 l~~L~~L~Ls~N~l~~~~p~ 418 (523)
+++|+.|++++|++++.+|.
T Consensus 496 l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTCCEEECCSSCBCCCHHH
T ss_pred CcccCEEEecCCCccCCCcc
Confidence 99999999999999988774
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=288.45 Aligned_cols=308 Identities=19% Similarity=0.155 Sum_probs=225.4
Q ss_pred CCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL 168 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L 168 (523)
+.+++.|++++|.+...++.. +++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..++.+. +|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEE
Confidence 477888888888887666543 78888888888888877777888888888888888888866666667776 78888
Q ss_pred EccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 169 DLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.+.. ++.+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888888665556788888888888888888777777888888888888888877542 556778888888887765
Q ss_pred CcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc
Q 009858 249 GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328 (523)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (523)
+. ...++|+.|++++|.+. .++... .+.|+.|+++++.... ...+..++
T Consensus 206 ~l-------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--------------------~~~l~~l~ 254 (597)
T 3oja_B 206 TL-------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--------------------TAWLLNYP 254 (597)
T ss_dssp EE-------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--------------------CGGGGGCT
T ss_pred cc-------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--------------------ChhhccCC
Confidence 32 23456777788777776 333222 2456666665543221 12234477
Q ss_pred ccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408 (523)
Q Consensus 329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 408 (523)
+|+.|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+++
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence 88888888888887778888888888888888888875 5666677888888888888888 456667778888888888
Q ss_pred CCcCcccCCCCCCCCcccCCccCCCCCCCC
Q 009858 409 RNKLEGRIPEGNQFATFSSDSYGGNLGLCG 438 (523)
Q Consensus 409 ~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~ 438 (523)
+|++++. | ...+..+..+.+.+|+..|.
T Consensus 333 ~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 333 HNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCc-C-hhhcCCCCEEEeeCCCCCCh
Confidence 8888754 3 23455666677777776654
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=283.37 Aligned_cols=327 Identities=22% Similarity=0.224 Sum_probs=179.2
Q ss_pred CCccEEEccCCCCccCCCC---CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 93 KNLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
++|++|++++|.+++..|. .+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|.. .+. +|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~-~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTV-NLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCC-CCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccC-CccEEe
Confidence 5666666666666655542 2666666666666666655666666666666666666666 55555 444 566666
Q ss_pred ccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCC--cEEECCCCcC--CCCchHhhhc-----------
Q 009858 170 LRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL--QVLDLGNNKM--KDTFPHWLGT----------- 233 (523)
Q Consensus 170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~----------- 233 (523)
+++|.+++ ..|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 66666664 245566666666666666666653 345555555 6666666666 4444444333
Q ss_pred ---------------CCCCCeEEecccc-------ccCcCCCcccccc---------------------------CCCCc
Q 009858 234 ---------------LRELQVLILRSNK-------FYGHLRDYEADYY---------------------------FSKLR 264 (523)
Q Consensus 234 ---------------l~~L~~L~l~~n~-------l~~~~~~~~~~~~---------------------------l~~L~ 264 (523)
+++|+.|++++|. +.+.++ .... .++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 2222222222221 100000 0011 12444
Q ss_pred EEeccCccCCCCCchHHH----hccccccccccccccccccccCcccc--------ccceEEEecchh-HHHHHhhcccc
Q 009858 265 ILDLSNNNFTGSLPAMFF----KNMKAMTDIGEAADENKSKYMGETYY--------EDSVTLIIKRQE-VKLMKILTIFT 331 (523)
Q Consensus 265 ~L~l~~n~l~~~~p~~~~----~~l~~L~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~L~ 331 (523)
+|++++|.+.+.+|..++ ..++.|+.+++..+.. .++.... ............ ...+..+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence 444444444444443322 3344444444333322 0000000 000000000000 00013467788
Q ss_pred cccCCCCccCcCcchhhcCcccCCeeeCcCCcccc--cCCccccCCCCCCEEeCCCCcCCCcCCh-hhcCCCCCCeEECC
Q 009858 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG--NIPSSLGDLTDLESLDLSSNVLDGVIPR-ELTRLTFLAVLNLS 408 (523)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls 408 (523)
+|++++|.+++..|..+..+++|++|++++|++++ .+|..++.+++|++|++++|.+++.+|. .+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 88888888887777778888888888888888875 4556677888888888888888774444 46777778888888
Q ss_pred CCcCcccCCCCCCCCcccCCccCCC
Q 009858 409 RNKLEGRIPEGNQFATFSSDSYGGN 433 (523)
Q Consensus 409 ~N~l~~~~p~~~~~~~~~~~~~~gn 433 (523)
+|.+++.+|.... ..+..+.+.+|
T Consensus 408 ~N~l~~~~~~~l~-~~L~~L~Ls~N 431 (520)
T 2z7x_B 408 SNILTDTIFRCLP-PRIKVLDLHSN 431 (520)
T ss_dssp SSCCCGGGGGSCC-TTCCEEECCSS
T ss_pred CCCCCcchhhhhc-ccCCEEECCCC
Confidence 8887766654321 34444444444
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=262.95 Aligned_cols=279 Identities=25% Similarity=0.359 Sum_probs=153.0
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+++|++|++++|.+++..+.. +++|++|++++|.++.. +.+.++++|++|++++|.++ .++. +..+. +|++|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~-~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP-LANLT-KMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG-GTTCT-TCCEEEC
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh-hccCC-ceeEEEC
Confidence 456666666666655444322 56666666666655532 24556666666666666665 3333 44554 5666666
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCC
Confidence 6664432222 25556666666666665553222 5556666666666666553322 55566666666666655443
Q ss_pred CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (523)
.+ ...+++|++|++++|.+++ ++. +.. +++|
T Consensus 215 ~~----~~~~~~L~~L~l~~n~l~~-~~~--~~~------------------------------------------l~~L 245 (347)
T 4fmz_A 215 TP----VANMTRLNSLKIGNNKITD-LSP--LAN------------------------------------------LSQL 245 (347)
T ss_dssp GG----GGGCTTCCEEECCSSCCCC-CGG--GTT------------------------------------------CTTC
T ss_pred ch----hhcCCcCCEEEccCCccCC-Ccc--hhc------------------------------------------CCCC
Confidence 32 2445566666666665552 221 333 4556
Q ss_pred ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCC
Q 009858 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410 (523)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 410 (523)
++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 666666666653 2 3455666666666666666532 23556666666666666666666666666666666666666
Q ss_pred cCcccCCCCCCCCcccCCccCCCC
Q 009858 411 KLEGRIPEGNQFATFSSDSYGGNL 434 (523)
Q Consensus 411 ~l~~~~p~~~~~~~~~~~~~~gn~ 434 (523)
++++..| ...+..+....+.+|+
T Consensus 322 ~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccccccC-hhhhhccceeehhhhc
Confidence 6665444 3344445555555543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=272.50 Aligned_cols=319 Identities=19% Similarity=0.219 Sum_probs=256.6
Q ss_pred cCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh
Q 009858 79 SDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP 155 (523)
Q Consensus 79 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 155 (523)
+.+..+....+..+++|++|++++|.+++..+.. +++|++|++++|.+++..|..|.++++|++|++++|.++ .+|
T Consensus 55 ~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 133 (390)
T 3o6n_A 55 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133 (390)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCC
Confidence 3333333333456799999999999999877643 899999999999999888888999999999999999999 677
Q ss_pred hhH-hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcC
Q 009858 156 ECI-GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL 234 (523)
Q Consensus 156 ~~l-~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 234 (523)
..+ ..+. +|++|++++|.+++..|..|..+++|++|++++|.+++. .+..+++|++|++++|.+.+ +...
T Consensus 134 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~ 204 (390)
T 3o6n_A 134 RGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIP 204 (390)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECC
T ss_pred HHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCC
Confidence 664 6776 899999999999988888899999999999999999854 35678999999999998874 2345
Q ss_pred CCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEE
Q 009858 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL 314 (523)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (523)
++|++|++++|.+..... ...++|+.|++++|.+++. ..+..++.|+.++++++.....
T Consensus 205 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~------------- 263 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI------------- 263 (390)
T ss_dssp SSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE-------------
T ss_pred CcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCc-------------
Confidence 689999999998865532 2357899999999999853 3578889999999887643221
Q ss_pred EecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCCh
Q 009858 315 IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPR 394 (523)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 394 (523)
....+..+++|+.|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++..
T Consensus 264 -----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 264 -----MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp -----ESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred -----ChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--
Confidence 1223445889999999999998 56777788999999999999998 57777889999999999999998653
Q ss_pred hhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCC
Q 009858 395 ELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGF 439 (523)
Q Consensus 395 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~ 439 (523)
+..+++|+.|++++|++++.... ..+..+....+.+++..|..
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred -chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 67789999999999999865322 23444555556666666654
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-31 Score=260.21 Aligned_cols=281 Identities=21% Similarity=0.295 Sum_probs=231.1
Q ss_pred CCCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
.+++|++|+++++.+....... +++|++|++++|.++...+ +..+++|++|++++|.++ .+| .+..+. +|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~~l~-~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQNLT-NLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCT-TCSEEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHcCCC-cCCEEE
Confidence 3589999999999998654322 8999999999999986544 889999999999999998 555 578887 899999
Q ss_pred ccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858 170 LRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
+++|.+++..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 99999985543 8899999999999997664444 48899999999999999886544 8899999999999998875
Q ss_pred cCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcc
Q 009858 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329 (523)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (523)
..+ ...+++|+.|++++|.+.+..+ + ..+++
T Consensus 192 ~~~----~~~l~~L~~L~l~~n~l~~~~~---~------------------------------------------~~~~~ 222 (347)
T 4fmz_A 192 ISP----LASLTSLHYFTAYVNQITDITP---V------------------------------------------ANMTR 222 (347)
T ss_dssp CGG----GGGCTTCCEEECCSSCCCCCGG---G------------------------------------------GGCTT
T ss_pred ccc----ccCCCccceeecccCCCCCCch---h------------------------------------------hcCCc
Confidence 543 3678999999999998874322 1 22688
Q ss_pred cccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409 (523)
Q Consensus 330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 409 (523)
|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++
T Consensus 223 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 9999999999995444 8899999999999999985 3 4689999999999999999975 4688999999999999
Q ss_pred CcCcccCCCC-CCCCcccCCccCCCCCC
Q 009858 410 NKLEGRIPEG-NQFATFSSDSYGGNLGL 436 (523)
Q Consensus 410 N~l~~~~p~~-~~~~~~~~~~~~gn~~l 436 (523)
|++++..|.. ..+..+....+.+|+..
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CcCCCcChhHhhccccCCEEEccCCccc
Confidence 9998776542 34556777777887643
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.5e-32 Score=286.33 Aligned_cols=320 Identities=19% Similarity=0.218 Sum_probs=261.6
Q ss_pred cCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh
Q 009858 79 SDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP 155 (523)
Q Consensus 79 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 155 (523)
+.+..+....+..+++|++|+|++|.+++..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 139 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence 3333444434556799999999999999887744 899999999999999988888999999999999999999 566
Q ss_pred hh-HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcC
Q 009858 156 EC-IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL 234 (523)
Q Consensus 156 ~~-l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 234 (523)
.. +..+. +|++|++++|.+++..|..|..+++|++|++++|.+++. .+..+++|+.|++++|.+.+ +...
T Consensus 140 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~ 210 (597)
T 3oja_B 140 RGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIP 210 (597)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECC
T ss_pred HHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCC
Confidence 55 57777 899999999999998888999999999999999999864 35678999999999998874 3345
Q ss_pred CCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEE
Q 009858 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL 314 (523)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (523)
++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..++.|+.|+++++.....
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~------------- 269 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI------------- 269 (597)
T ss_dssp TTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE-------------
T ss_pred chhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCC-------------
Confidence 78999999999886544322 46899999999999853 4578889999999887643221
Q ss_pred EecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCCh
Q 009858 315 IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPR 394 (523)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 394 (523)
....+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..
T Consensus 270 -----~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-- 340 (597)
T 3oja_B 270 -----MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-- 340 (597)
T ss_dssp -----ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred -----CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--
Confidence 12234558999999999999994 6777788999999999999999 67888899999999999999998663
Q ss_pred hhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858 395 ELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 395 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+..+++|+.|++++|++++..+. ..+..+....+.++...|+.+
T Consensus 341 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred -hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 66788999999999999976432 345566666778888888764
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=6.2e-31 Score=256.41 Aligned_cols=269 Identities=20% Similarity=0.221 Sum_probs=221.3
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
.+++.++++++.++..+....++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCC
Confidence 4789999999999876555578999999999999988888899999999999999999976788999987 899999999
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC--CchHhhhcCCCCCeEEeccccccCc
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD--TFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.+.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 9998 5565554 689999999999998777889999999999999999863 6678899999999999999998754
Q ss_pred CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (523)
. ... .++|++|++++|.+++..|.. +.. +++|
T Consensus 187 ~-~~~----~~~L~~L~l~~n~l~~~~~~~-~~~------------------------------------------l~~L 218 (330)
T 1xku_A 187 P-QGL----PPSLTELHLDGNKITKVDAAS-LKG------------------------------------------LNNL 218 (330)
T ss_dssp C-SSC----CTTCSEEECTTSCCCEECTGG-GTT------------------------------------------CTTC
T ss_pred C-ccc----cccCCEEECCCCcCCccCHHH-hcC------------------------------------------CCCC
Confidence 3 322 379999999999988443322 222 5677
Q ss_pred ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC------CCCCCe
Q 009858 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR------LTFLAV 404 (523)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~ 404 (523)
+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~ 297 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence 88888888888766677888888888888888888 67777888888888888888888776666643 367888
Q ss_pred EECCCCcCcc
Q 009858 405 LNLSRNKLEG 414 (523)
Q Consensus 405 L~Ls~N~l~~ 414 (523)
+++++|++..
T Consensus 298 l~l~~N~~~~ 307 (330)
T 1xku_A 298 VSLFSNPVQY 307 (330)
T ss_dssp EECCSSSSCG
T ss_pred eEeecCcccc
Confidence 8888888763
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=6.6e-31 Score=268.54 Aligned_cols=342 Identities=21% Similarity=0.287 Sum_probs=224.7
Q ss_pred HHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-CCCCcE
Q 009858 42 VLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-SSNMRV 118 (523)
Q Consensus 42 ~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L~~ 118 (523)
.+..++.|++.+|.+..+.. +.....+. ++..+.+..... +..+++|++|++++|.+++..+.. +++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred HhccccEEecCCCCCccCcc-----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCE
Confidence 45667777777776554332 11222222 222233333322 455667777777777766655422 667777
Q ss_pred EEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC
Q 009858 119 FLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198 (523)
Q Consensus 119 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (523)
|++++|.+++..+ +.++++|++|++++|.++ .++ .+..+. +|++|+++ |.+.+.. .+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~~~~l~-~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLT-SLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCG-GGTTCT-TCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CCh-hhccCC-cccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 7777776664432 666777777777777766 344 355555 67777665 3333222 26677778888888887
Q ss_pred CCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCc
Q 009858 199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP 278 (523)
Q Consensus 199 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 278 (523)
+.+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+. .....+++|+.|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh
Confidence 7643 346777888888888887776544 66777888888888776543 122557788888888887774433
Q ss_pred hHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeee
Q 009858 279 AMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLN 358 (523)
Q Consensus 279 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 358 (523)
+..++.|+.++++.+..... ..+..+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 261 ---~~~l~~L~~L~l~~n~l~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 261 ---LSGLTKLTELKLGANQISNI--------------------SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp ---GTTCTTCSEEECCSSCCCCC--------------------GGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred ---hhcCCCCCEEECCCCccCcc--------------------ccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 66777777777765533211 013447888888888888885444 67788888888
Q ss_pred CcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCC
Q 009858 359 LSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGL 436 (523)
Q Consensus 359 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~l 436 (523)
|++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| ...+..+....+.+|+..
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 88888886554 67888888888888888865 467888888888888888887776 455666666667777543
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=5.6e-31 Score=280.11 Aligned_cols=367 Identities=20% Similarity=0.183 Sum_probs=254.3
Q ss_pred hhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCC
Q 009858 72 SAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN 148 (523)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (523)
.+.......+|..++ +++++|||++|+|++..+.. +++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus 37 ~c~~~~l~~vP~~lp------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp ECTTSCCSSCCSSSC------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ECCCCCcCccCCCCC------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 455556667776554 68999999999999887754 899999999999999888889999999999999999
Q ss_pred cCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCC-CCCccccCCCCCcEEECCCCcCCCCc
Q 009858 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG-SVPRSLLNCANLQVLDLGNNKMKDTF 227 (523)
Q Consensus 149 ~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~ 227 (523)
++++..+..|..+. +|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..
T Consensus 111 ~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 111 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 99954455678887 89999999999998777889999999999999999975 45788899999999999999988766
Q ss_pred hHhhhcCCCCC----eEEeccccccCcCCCc-------------------------------------------------
Q 009858 228 PHWLGTLRELQ----VLILRSNKFYGHLRDY------------------------------------------------- 254 (523)
Q Consensus 228 ~~~l~~l~~L~----~L~l~~n~l~~~~~~~------------------------------------------------- 254 (523)
+..+..+.+++ .++++.|.+....+..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 66554433222 2333332221100000
Q ss_pred ----------------------------------------------------cccccCCCCcEEeccCccCCCCCchHH-
Q 009858 255 ----------------------------------------------------EADYYFSKLRILDLSNNNFTGSLPAMF- 281 (523)
Q Consensus 255 ----------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~- 281 (523)
.......+++.|++.+|.+.+ ++...
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l 348 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPTLKL 348 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCCCBC
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCcccc
Confidence 000112234444444444331 11000
Q ss_pred ------------------HhccccccccccccccccccccC--------------------------ccccccceEE---
Q 009858 282 ------------------FKNMKAMTDIGEAADENKSKYMG--------------------------ETYYEDSVTL--- 314 (523)
Q Consensus 282 ------------------~~~l~~L~~l~~~~~~~~~~~~~--------------------------~~~~~~~~~~--- 314 (523)
...++.|+.++++.+........ ..........
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT
T ss_pred hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh
Confidence 11233444444433322110000 0000000000
Q ss_pred ---EecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc-ccCCccccCCCCCCEEeCCCCcCCC
Q 009858 315 ---IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS-GNIPSSLGDLTDLESLDLSSNVLDG 390 (523)
Q Consensus 315 ---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~ 390 (523)
.........+..+++++.++++.|.+.+..+..+..+++|+.|+|++|.+. +..|..|..+++|++|+|++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 111122234556788999999999999888899999999999999999754 4678899999999999999999999
Q ss_pred cCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCC-------------------CCCCCCCCCCCC
Q 009858 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNL-------------------GLCGFPLSKNCS 446 (523)
Q Consensus 391 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~-------------------~lc~~~~~~~c~ 446 (523)
..|..|.++++|++|+|++|++++..|.. ..+..+..+.+.+|. .+.++|+.|+|.
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999999776642 223334333333332 245678888885
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.3e-31 Score=258.50 Aligned_cols=267 Identities=20% Similarity=0.220 Sum_probs=216.0
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
.+++.++++++.++..+....++|+.|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEEECCC
Confidence 4789999999999866555588999999999999988888899999999999999999977788898887 899999999
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC--CchHhhhcCCCCCeEEeccccccCc
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD--TFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+ +|+.|++++|.+.+.
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 9998 5565554 789999999999997767779999999999999999863 567777777 999999999998764
Q ss_pred CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (523)
. ... .++|++|++++|.+++..+ ..+.. +++|
T Consensus 188 ~-~~~----~~~L~~L~l~~n~i~~~~~-~~l~~------------------------------------------l~~L 219 (332)
T 2ft3_A 188 P-KDL----PETLNELHLDHNKIQAIEL-EDLLR------------------------------------------YSKL 219 (332)
T ss_dssp C-SSS----CSSCSCCBCCSSCCCCCCT-TSSTT------------------------------------------CTTC
T ss_pred C-ccc----cCCCCEEECCCCcCCccCH-HHhcC------------------------------------------CCCC
Confidence 3 322 3789999999999884333 22222 5677
Q ss_pred ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCC------CCCCe
Q 009858 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL------TFLAV 404 (523)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l------~~L~~ 404 (523)
+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|... +.|+.
T Consensus 220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 88888888888666667778888888888888887 677778888888888888888887766666543 56788
Q ss_pred EECCCCcCc
Q 009858 405 LNLSRNKLE 413 (523)
Q Consensus 405 L~Ls~N~l~ 413 (523)
|++++|++.
T Consensus 299 L~l~~N~~~ 307 (332)
T 2ft3_A 299 ISLFNNPVP 307 (332)
T ss_dssp EECCSSSSC
T ss_pred eEeecCccc
Confidence 888888876
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.9e-30 Score=260.97 Aligned_cols=323 Identities=22% Similarity=0.272 Sum_probs=260.6
Q ss_pred HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccc--cCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-CCCC
Q 009858 40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEA--SDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-SSNM 116 (523)
Q Consensus 40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L 116 (523)
+..+..|++|++++|.+.++.. +..+..+..+.. +.+..... +..+++|++|++++|.+++..+.. +++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh-----hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCC
Confidence 4557789999999998877543 333333433333 33333333 677899999999999998876533 9999
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
++|++++|.+.+. + .+..+++|++|+++ |.+. .++. +..+. +|++|++++|.+++. + .+..+++|++|++++
T Consensus 137 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~-~~~~-~~~l~-~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 137 NRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT-DLKP-LANLT-TLERLDISSNKVSDI-S-VLAKLTNLESLIATN 208 (466)
T ss_dssp SEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC-CCGG-GTTCT-TCCEEECCSSCCCCC-G-GGGGCTTCSEEECCS
T ss_pred CEEECCCCccCCC-h-hhccCCcccEeecC-Cccc-Cchh-hccCC-CCCEEECcCCcCCCC-h-hhccCCCCCEEEecC
Confidence 9999999998853 3 58899999999997 5555 3333 77887 899999999999854 2 478899999999999
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS 276 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (523)
|.+.+..| +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~- 279 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISN- 279 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCC-
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCc-
Confidence 99986544 77899999999999998853 468899999999999999876654 3678999999999999985
Q ss_pred CchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCe
Q 009858 277 LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL 356 (523)
Q Consensus 277 ~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 356 (523)
++. +..++.|+.++++.+..... ..+..+++|+.|++++|.+++..| +..+++|++
T Consensus 280 ~~~--~~~l~~L~~L~L~~n~l~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 280 ISP--LAGLTALTNLELNENQLEDI--------------------SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCSCC--------------------GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred ccc--ccCCCccCeEEcCCCcccCc--------------------hhhcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 443 77889999999887643221 113458999999999999997666 778999999
Q ss_pred eeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 357 LNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 357 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999964 468999999999999999998876 8899999999999999996
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=258.46 Aligned_cols=279 Identities=17% Similarity=0.156 Sum_probs=195.8
Q ss_pred CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858 94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN 173 (523)
Q Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n 173 (523)
.....+++++.++..+....++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++|
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCC
Confidence 334467777777765554566777777777777766666777777777777777777755566677776 6777777777
Q ss_pred cccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEECCCCc-CCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858 174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQVLDLGNNK-MKDTFPHWLGTLRELQVLILRSNKFYGHL 251 (523)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 251 (523)
++++..+..|.++++|++|++++|++.+..+ ..+.++++|++|++++|. +....+..+..+++|++|++++|.+.+..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 7775444446777777777777777774333 367777777888777773 55445566777777888888877777665
Q ss_pred CCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc
Q 009858 252 RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331 (523)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 331 (523)
+..+ ..+++|++|++++|.+. .+|..++. .+++|+
T Consensus 191 ~~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~------------------------------------------~~~~L~ 225 (353)
T 2z80_A 191 PKSL--KSIQNVSHLILHMKQHI-LLLEIFVD------------------------------------------VTSSVE 225 (353)
T ss_dssp TTTT--TTCSEEEEEEEECSCST-THHHHHHH------------------------------------------HTTTEE
T ss_pred HHHH--hccccCCeecCCCCccc-cchhhhhh------------------------------------------hccccc
Confidence 6555 55777888888887765 44443322 256677
Q ss_pred cccCCCCccCcCcchhh---cCcccCCeeeCcCCcccc----cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCe
Q 009858 332 TIDLSKNSFHGEIPELM---GKLHSLRLLNLSQNILSG----NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV 404 (523)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 404 (523)
.|++++|.+++..+..+ .....++.++|+++.+.+ .+|..+..+++|++|+|++|+++...+..|..+++|++
T Consensus 226 ~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 77777777775444332 234567777777777765 46777888999999999999999655555688999999
Q ss_pred EECCCCcCcccCCC
Q 009858 405 LNLSRNKLEGRIPE 418 (523)
Q Consensus 405 L~Ls~N~l~~~~p~ 418 (523)
|++++|++++..|.
T Consensus 306 L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 306 IWLHTNPWDCSCPR 319 (353)
T ss_dssp EECCSSCBCCCHHH
T ss_pred EEeeCCCccCcCCC
Confidence 99999999887663
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.2e-29 Score=253.34 Aligned_cols=307 Identities=19% Similarity=0.171 Sum_probs=170.0
Q ss_pred HHHHHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCC
Q 009858 39 FVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNM 116 (523)
Q Consensus 39 ~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L 116 (523)
.+..+..|++|++++|.+.+++ .+..+..+. ++..+.+... .+..+++|++|++++|.+++.....+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-----GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLDVTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-----TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccCh-----hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCceeecCCCCcC
Confidence 4666788888888888776542 122222222 2222222222 14455666666666666665433336666
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
++|++++|.+++. + +..+++|++|++++|++++ ++ ++.+. +|++|++++|...+.+ .+..+++|++|++++
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNT-QLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCT-TCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCC-cCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 6666666666542 2 5566666666666666663 32 44554 5666666666433333 355666666666666
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS 276 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (523)
|++++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|.+.+. | ...+++|+.|++++|.+++
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~- 247 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTE- 247 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSC-
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCC-
Confidence 66654 33 55666666666666666543 255666666666666666552 2 1445666666666666653
Q ss_pred CchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCe
Q 009858 277 LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL 356 (523)
Q Consensus 277 ~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 356 (523)
+| ...++.|+.+.+. ..+|+.|++++|.+.+.+| +..+++|+.
T Consensus 248 ~~---~~~l~~L~~L~l~--------------------------------~n~L~~L~l~~n~~~~~~~--~~~l~~L~~ 290 (457)
T 3bz5_A 248 LD---VSTLSKLTTLHCI--------------------------------QTDLLEIDLTHNTQLIYFQ--AEGCRKIKE 290 (457)
T ss_dssp CC---CTTCTTCCEEECT--------------------------------TCCCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred cC---HHHCCCCCEEecc--------------------------------CCCCCEEECCCCccCCccc--ccccccCCE
Confidence 33 1233333333332 2345555666665555554 345566666
Q ss_pred eeCcCCcccccCCc--------cccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 357 LNLSQNILSGNIPS--------SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 357 L~Ls~n~l~~~~p~--------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
|++++|...+.+|. .+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred EECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 66666654444332 134445666666666666653 2 5566666666666666664
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.3e-29 Score=243.35 Aligned_cols=268 Identities=22% Similarity=0.269 Sum_probs=223.8
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
..+++.++++++.++ .+|..+ .++|++|++++|++++..+..+..+. +|++|++++|.+++..|..|..+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 447899999999988 455554 36899999999999965566788887 89999999999998889999999999999
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC--cCCCccccccCCCCcEEeccC
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG--HLRDYEADYYFSKLRILDLSN 270 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~ 270 (523)
++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+ ..+++|++|++++
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~ 180 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--QGMKKLSYIRIAD 180 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG--GGCTTCCEEECCS
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc--cCCCCcCEEECCC
Confidence 99999998 5665554 899999999999998888889999999999999999864 334444 6789999999999
Q ss_pred ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK 350 (523)
Q Consensus 271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 350 (523)
|.++ .+|... .++|++|++++|.+++..|..+..
T Consensus 181 n~l~-~l~~~~---------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 181 TNIT-TIPQGL---------------------------------------------PPSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp SCCC-SCCSSC---------------------------------------------CTTCSEEECTTSCCCEECTGGGTT
T ss_pred Cccc-cCCccc---------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence 9987 455321 367899999999999888899999
Q ss_pred cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC-------CCC
Q 009858 351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN-------QFA 423 (523)
Q Consensus 351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-------~~~ 423 (523)
+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+... ...
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 999999999999999888888999999999999999999 677889999999999999999995443321 123
Q ss_pred cccCCccCCCCCC
Q 009858 424 TFSSDSYGGNLGL 436 (523)
Q Consensus 424 ~~~~~~~~gn~~l 436 (523)
.+....+.||+..
T Consensus 294 ~l~~l~l~~N~~~ 306 (330)
T 1xku_A 294 SYSGVSLFSNPVQ 306 (330)
T ss_dssp CCSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 3444556666543
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=9e-29 Score=251.68 Aligned_cols=251 Identities=21% Similarity=0.194 Sum_probs=185.8
Q ss_pred CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858 94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN 173 (523)
Q Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n 173 (523)
..+.++.++..++..+....++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..+. +|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCC
Confidence 346788888888765555567888888888888877777888888888888888888766666777776 7888888888
Q ss_pred cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCC
Q 009858 174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
.+++..+..|..+++|++|++++|++....+..|.++++|++|++++|...+.++ ..+..+++|+.|++++|.+.+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 8876666667777888888888887776656677777777777777743333332 245555555555555554432
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (523)
+|. + ..+++|+.
T Consensus 211 ------------------------~~~--~------------------------------------------~~l~~L~~ 222 (452)
T 3zyi_A 211 ------------------------MPN--L------------------------------------------TPLVGLEE 222 (452)
T ss_dssp ------------------------CCC--C------------------------------------------TTCTTCCE
T ss_pred ------------------------ccc--c------------------------------------------cccccccE
Confidence 221 0 01466777
Q ss_pred ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
|+|++|.+++..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 78888888777788888888999999999999888888888899999999999999888888888889999999999988
Q ss_pred cccC
Q 009858 413 EGRI 416 (523)
Q Consensus 413 ~~~~ 416 (523)
.+..
T Consensus 303 ~CdC 306 (452)
T 3zyi_A 303 NCDC 306 (452)
T ss_dssp ECST
T ss_pred CCCC
Confidence 7554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.4e-29 Score=241.86 Aligned_cols=266 Identities=23% Similarity=0.259 Sum_probs=220.8
Q ss_pred CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858 114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN 193 (523)
Q Consensus 114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (523)
.+++.++++++.++ .+|..+ .++|++|++++|.+++..|..+..+. +|++|++++|.+++..|..|.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 47899999999988 556555 36899999999999966677888887 899999999999988888999999999999
Q ss_pred CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC--cCCCccccccCCCCcEEeccCc
Q 009858 194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG--HLRDYEADYYFSKLRILDLSNN 271 (523)
Q Consensus 194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n 271 (523)
+++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+ ..+ +|++|++++|
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEA 182 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCC
Confidence 9999998 5665554 899999999999997777789999999999999999853 444444 344 8999999999
Q ss_pred cCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCc
Q 009858 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKL 351 (523)
Q Consensus 272 ~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 351 (523)
.++ .+|..+ .++|++|++++|.+++..+..+..+
T Consensus 183 ~l~-~l~~~~---------------------------------------------~~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 183 KLT-GIPKDL---------------------------------------------PETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp BCS-SCCSSS---------------------------------------------CSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred CCC-ccCccc---------------------------------------------cCCCCEEECCCCcCCccCHHHhcCC
Confidence 987 455321 3578999999999998888899999
Q ss_pred ccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC-------CCCc
Q 009858 352 HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN-------QFAT 424 (523)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-------~~~~ 424 (523)
++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+... .+..
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 99999999999999888888999999999999999999 677789999999999999999995544321 1233
Q ss_pred ccCCccCCCCCC
Q 009858 425 FSSDSYGGNLGL 436 (523)
Q Consensus 425 ~~~~~~~gn~~l 436 (523)
+....+.||+..
T Consensus 296 l~~L~l~~N~~~ 307 (332)
T 2ft3_A 296 YNGISLFNNPVP 307 (332)
T ss_dssp BSEEECCSSSSC
T ss_pred ccceEeecCccc
Confidence 455566777654
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=249.10 Aligned_cols=251 Identities=20% Similarity=0.194 Sum_probs=200.5
Q ss_pred CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858 94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN 173 (523)
Q Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n 173 (523)
..+.++.++..++..+....++++.|+|++|.++...+..|.++++|++|+|++|.+++..+..+..+. +|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCC
Confidence 456788888888876666688999999999999988888899999999999999999866667788887 8999999999
Q ss_pred cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCC
Q 009858 174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
+++...+..|..+++|++|++++|.+....+..|.++++|++|++++|...+.++ ..|..+++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 9987777788889999999999999887767788888888888888854333333 34556666666666665543
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (523)
.+|. + ..+++|+.
T Consensus 199 -----------------------~~~~--~------------------------------------------~~l~~L~~ 211 (440)
T 3zyj_A 199 -----------------------EIPN--L------------------------------------------TPLIKLDE 211 (440)
T ss_dssp -----------------------SCCC--C------------------------------------------TTCSSCCE
T ss_pred -----------------------cccc--c------------------------------------------CCCcccCE
Confidence 2221 0 01466777
Q ss_pred ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 78888888777788888899999999999999988888899999999999999999988888888999999999999998
Q ss_pred cccC
Q 009858 413 EGRI 416 (523)
Q Consensus 413 ~~~~ 416 (523)
.+..
T Consensus 292 ~CdC 295 (440)
T 3zyj_A 292 NCNC 295 (440)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 7543
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.2e-29 Score=244.52 Aligned_cols=249 Identities=25% Similarity=0.250 Sum_probs=178.8
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCc--cChhhHhhcccCCcEEEccCC
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG--TIPECIGNFSKSLRVLDLRKN 173 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~~L~~L~L~~n 173 (523)
+.++++++.++..+....++|++|++++|.++...+..|.++++|++|++++|.++. ..|..+..+. +|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCC
Confidence 467888888876665557889999999999886666668889999999999999872 2367777776 7999999999
Q ss_pred cccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC-cC
Q 009858 174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG-HL 251 (523)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~ 251 (523)
.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 888 456667888888899988888875544 567888888888888888877777777777777777777776654 23
Q ss_pred CCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc
Q 009858 252 RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331 (523)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 331 (523)
+..+ ..+ ++|+
T Consensus 168 ~~~~--~~l-------------------------------------------------------------------~~L~ 178 (306)
T 2z66_A 168 PDIF--TEL-------------------------------------------------------------------RNLT 178 (306)
T ss_dssp CSCC--TTC-------------------------------------------------------------------TTCC
T ss_pred hhHH--hhC-------------------------------------------------------------------cCCC
Confidence 3322 233 4455
Q ss_pred cccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC-CCCeEECCCC
Q 009858 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT-FLAVLNLSRN 410 (523)
Q Consensus 332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~N 410 (523)
+|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 555555555544555666666677777777776655555666677777777777777766666666663 6777777777
Q ss_pred cCccc
Q 009858 411 KLEGR 415 (523)
Q Consensus 411 ~l~~~ 415 (523)
++++.
T Consensus 259 ~~~~~ 263 (306)
T 2z66_A 259 DFACT 263 (306)
T ss_dssp CEECS
T ss_pred Ceecc
Confidence 77654
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.7e-28 Score=247.20 Aligned_cols=178 Identities=24% Similarity=0.341 Sum_probs=126.8
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
++|++|++++|.+++. +...++|++|++++|.+++ +| .|.++++|++|++++|+++ .+|..+ . +|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l-~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~-~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---P-SLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCC-CSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCS
T ss_pred CCCcEEECCCCccCcc-cCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---c-cccEEECcC
Confidence 6777777777777653 2334678888888888875 55 4788888888888888887 466543 2 688888888
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .++.+++|++|++++|.+.+. +
T Consensus 183 n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~ 253 (454)
T 1jl5_A 183 NQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-P 253 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-C
T ss_pred CcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-c
Confidence 88875 45 57888888888888888874 4432 257888888888877 566 377888888888888887653 2
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE 297 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~ 297 (523)
. .+++|+.|++++|.+++ +|.. ++.|+.++++.+.
T Consensus 254 ~-----~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 254 D-----LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENI 288 (454)
T ss_dssp S-----CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSC
T ss_pred c-----cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCc
Confidence 2 24678888888888773 5532 3567777776654
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=5.3e-28 Score=245.02 Aligned_cols=339 Identities=21% Similarity=0.221 Sum_probs=211.7
Q ss_pred hhhhHHHHHHHhhhhhcCCccccccccCCCccchhhh------------hhhccccccCCCcccCCCCCCCCCccEEEcc
Q 009858 34 SSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDY------------ASAAEFEASDGPKLLGNKKLPWKNLEYLDLR 101 (523)
Q Consensus 34 ~~l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 101 (523)
..++..+..+..|++|+++.|.+.+..+.....+..+ ....++..+.+..+.. -.++|++|+++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~ 99 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVAS 99 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----CCTTCSEEECC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----CcCCCCEEEcc
Confidence 4566677888889999999988765333222222221 1112222222222211 13789999999
Q ss_pred CCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCC
Q 009858 102 SNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE 181 (523)
Q Consensus 102 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~ 181 (523)
+|.+++ +|..+++|++|++++|.+++. +.. .++|++|++++|+++ .+| .++.+. +|++|++++|++++ +|.
T Consensus 100 ~n~l~~-lp~~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~-~L~~L~l~~N~l~~-lp~ 170 (454)
T 1jl5_A 100 CNSLTE-LPELPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLP-ELQNSS-FLKIIDVDNNSLKK-LPD 170 (454)
T ss_dssp SSCCSS-CCCCCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCC-CCTTCT-TCCEEECCSSCCSC-CCC
T ss_pred CCcCCc-cccccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCc-ccCCCC-CCCEEECCCCcCcc-cCC
Confidence 999987 566678999999999988752 221 268999999999998 588 588887 89999999999985 555
Q ss_pred CCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCC
Q 009858 182 TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261 (523)
Q Consensus 182 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 261 (523)
.+ .+|++|++++|.+.+ +| .+.++++|++|++++|.+.+ +|.. .++|++|++++|.+. .+|. + ..++
T Consensus 171 ~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~--~~l~ 237 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-L--QNLP 237 (454)
T ss_dssp CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-C--TTCT
T ss_pred Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-c--CCCC
Confidence 43 489999999999985 56 68899999999999999885 4432 358999999999887 4443 2 6789
Q ss_pred CCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH-HHhhcccccccCCCCcc
Q 009858 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL-MKILTIFTTIDLSKNSF 340 (523)
Q Consensus 262 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l 340 (523)
+|++|++++|.++ .+|. .++.|+.++++.+.... ++.. ......+......... ....++|+.|++++|.+
T Consensus 238 ~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~--l~~~-~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 238 FLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD--LPEL-PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp TCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC--CCCC-CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-cccc----cccccCEEECCCCcccc--cCcc-cCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 9999999999988 4553 24677888877664332 1110 0000000000000000 00124555566666655
Q ss_pred CcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc--cCCC
Q 009858 341 HGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG--RIPE 418 (523)
Q Consensus 341 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~ 418 (523)
++ ++. ..++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|.
T Consensus 310 ~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 310 RS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp SE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred Cc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 53 221 11467777777777764 4443 4677777777777774 343 35677777777777776 4554
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.6e-28 Score=247.47 Aligned_cols=292 Identities=18% Similarity=0.146 Sum_probs=165.8
Q ss_pred CCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 93 KNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
++|++|++++|.+++. |.. +++|++|++++|.+++. | +..+++|++|++++|.+++ +| ++.+. +|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~-~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLT-KLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCT-TCCEEEC
T ss_pred CCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCC-cCCEEEC
Confidence 4555555555555543 221 45555555555555542 2 4455555555555555552 32 44444 4555555
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|++++. | +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+.+.
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 55555532 2 44555555555555555432 1445555555555555333333 244455555555555555442
Q ss_pred CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (523)
+ ...+++|+.|++++|.+++ ++ +..++.|+.++++.+...... +..+++|
T Consensus 186 -~----l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip---------------------~~~l~~L 235 (457)
T 3bz5_A 186 -D----VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID---------------------VTPLTQL 235 (457)
T ss_dssp -C----CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---------------------CTTCTTC
T ss_pred -c----cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC---------------------ccccCCC
Confidence 1 1334555555555555542 22 344445555554443222100 1226788
Q ss_pred ccccCCCCccCcCcchhhcCcc-------cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChh--------
Q 009858 331 TTIDLSKNSFHGEIPELMGKLH-------SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRE-------- 395 (523)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-------- 395 (523)
+.|++++|.+++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|..
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 9999999999876555555544 56778888888777766 578899999999999876665532
Q ss_pred hcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCC
Q 009858 396 LTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL 434 (523)
Q Consensus 396 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~ 434 (523)
+..+++|++|++++|++++. | ...+..+..+...+|.
T Consensus 314 l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSC
T ss_pred hhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCC
Confidence 55678999999999999974 4 3445555555555553
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1e-28 Score=239.81 Aligned_cols=235 Identities=19% Similarity=0.248 Sum_probs=157.7
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
.++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+. +|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 355666666666665 44555555666666666666666 6666666665 5666666666666 455556666666666
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCcc
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 272 (523)
++++|++.+.+|..+.. . ..+..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCC
Confidence 66665555555554432 0 00011223555666666665554 333332 445566666666666
Q ss_pred CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcc
Q 009858 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH 352 (523)
Q Consensus 273 l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 352 (523)
++ .+|.. + ..+++|++|++++|.+.+.+|..+..++
T Consensus 218 l~-~l~~~-l------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 218 LS-ALGPA-I------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp CC-CCCGG-G------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred CC-cCchh-h------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 65 33322 1 1256778888888888888888888999
Q ss_pred cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 353 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
+|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999899999999999999999999999999999999999999999877665
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.8e-28 Score=233.82 Aligned_cols=229 Identities=25% Similarity=0.234 Sum_probs=152.6
Q ss_pred CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN 220 (523)
Q Consensus 141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 220 (523)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44555555555 455432 22566666666666655555566666666666666666555555566666666666666
Q ss_pred Cc-CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccc
Q 009858 221 NK-MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299 (523)
Q Consensus 221 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~ 299 (523)
|. +....|..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~---------------- 150 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFR---------------- 150 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTT----------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHhc----------------
Confidence 65 444445556666666666666666555444443 44566666666666665 23322111
Q ss_pred ccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCC
Q 009858 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379 (523)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 379 (523)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+
T Consensus 151 --------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 151 --------------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp --------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred --------------------------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 156677778888888755566688888999999999999888888888999999
Q ss_pred EEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCC
Q 009858 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 380 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 418 (523)
+|++++|.+++..+..+..+++|+.|++++|++.+..+.
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 999999999987777788899999999999998865543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5e-28 Score=245.33 Aligned_cols=251 Identities=22% Similarity=0.219 Sum_probs=197.5
Q ss_pred cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG 219 (523)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (523)
.+.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456677777776 6776543 367788888888777777777788888888888888776666777778888888888
Q ss_pred CCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccc
Q 009858 220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299 (523)
Q Consensus 220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~ 299 (523)
+|.+++..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|...+.++...+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~---------------- 182 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFE---------------- 182 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhh----------------
Confidence 888776666677778888888888887766555444 56788888888875544455443332
Q ss_pred ccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCC
Q 009858 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379 (523)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 379 (523)
.+++|++|+|++|.++ .+|. +..+++|++|+|++|++++..|..|..+++|+
T Consensus 183 --------------------------~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 183 --------------------------GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp --------------------------TCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred --------------------------cccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCC
Confidence 2678899999999998 5564 78899999999999999998899999999999
Q ss_pred EEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 380 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..+..+..+.+.+||+.|++.
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999999999999999999999999655543 356677888899999988764
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.3e-28 Score=245.46 Aligned_cols=250 Identities=20% Similarity=0.175 Sum_probs=170.4
Q ss_pred CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN 220 (523)
Q Consensus 141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 220 (523)
..++.++..++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34444555554 4444322 2455555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccc
Q 009858 221 NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS 300 (523)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~ 300 (523)
|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|...+.++...+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~----------------- 193 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFE----------------- 193 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTT-----------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhcc-----------------
Confidence 55554444445555555555555555554433333 44666666666664433344432222
Q ss_pred cccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCE
Q 009858 301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLES 380 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 380 (523)
.+++|++|+|++|.+++ +| .+..+++|++|+|++|.+++..|..|..+++|++
T Consensus 194 -------------------------~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 194 -------------------------GLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp -------------------------TCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred -------------------------CCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCE
Confidence 26788999999999984 45 4788999999999999999988999999999999
Q ss_pred EeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858 381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~ 440 (523)
|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..+..+..+.+.+|++.|++.
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999999999999999999555443 346677888899999988875
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=243.74 Aligned_cols=257 Identities=19% Similarity=0.244 Sum_probs=208.3
Q ss_pred CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
++|++|++++|.+++..+.. +++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+. +|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-TCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-cCCEEE
Confidence 68999999999999877633 89999999999999988888999999999999999999944444477887 899999
Q ss_pred ccCCcccccCC-CCCCCCCCCCEEECcCC-CCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 170 LRKNRFHGTIP-ETFPKGNNLTTLNFNGN-ELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 170 L~~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
+++|++++..+ ..|..+++|++|++++| .+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999995544 47899999999999999 47766678899999999999999999988899999999999999999997
Q ss_pred cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh
Q 009858 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (523)
........ ..+++|+.|++++|.+++..+.. +... ...
T Consensus 211 ~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~-l~~~---------------------------------------~~~ 248 (353)
T 2z80_A 211 ILLLEIFV--DVTSSVECLELRDTDLDTFHFSE-LSTG---------------------------------------ETN 248 (353)
T ss_dssp TTHHHHHH--HHTTTEEEEEEESCBCTTCCCC----------------------------------------------CC
T ss_pred ccchhhhh--hhcccccEEECCCCccccccccc-cccc---------------------------------------ccc
Confidence 54333222 45899999999999998533221 1100 012
Q ss_pred cccccccCCCCccCc----CcchhhcCcccCCeeeCcCCcccccCCcc-ccCCCCCCEEeCCCCcCCCcCC
Q 009858 328 TIFTTIDLSKNSFHG----EIPELMGKLHSLRLLNLSQNILSGNIPSS-LGDLTDLESLDLSSNVLDGVIP 393 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~ 393 (523)
..++.++++++.+.+ .+|.++..+++|++|+|++|+++ .+|.. |..+++|++|+|++|.+.+..|
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 334455555555543 57888999999999999999999 45554 6899999999999999997654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.8e-28 Score=233.77 Aligned_cols=252 Identities=21% Similarity=0.157 Sum_probs=173.4
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc-
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR- 174 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~- 174 (523)
++++.+++.++..+....++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC
Confidence 6778888887765544577888888888888776667777788888888888887755577777776 68888887776
Q ss_pred ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCc
Q 009858 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY 254 (523)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 254 (523)
+....|..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 66555667777777777777777777666667777777777777777776555555666666666666666554332222
Q ss_pred cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccccc
Q 009858 255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTID 334 (523)
Q Consensus 255 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 334 (523)
+ .. +++|+.|+
T Consensus 173 ~--~~-------------------------------------------------------------------l~~L~~L~ 183 (285)
T 1ozn_A 173 F--RG-------------------------------------------------------------------LHSLDRLL 183 (285)
T ss_dssp T--TT-------------------------------------------------------------------CTTCCEEE
T ss_pred h--cC-------------------------------------------------------------------ccccCEEE
Confidence 2 12 45566666
Q ss_pred CCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 335 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
+++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+....+.. .-...++.+..+.+.+.+
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPC 262 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBE
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCcccc
Confidence 6666666666777777788888888888888665566788888888888888876543221 111224445566777877
Q ss_pred cCCC
Q 009858 415 RIPE 418 (523)
Q Consensus 415 ~~p~ 418 (523)
..|.
T Consensus 263 ~~p~ 266 (285)
T 1ozn_A 263 SLPQ 266 (285)
T ss_dssp EESG
T ss_pred CCch
Confidence 7775
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.2e-28 Score=237.46 Aligned_cols=224 Identities=21% Similarity=0.234 Sum_probs=162.8
Q ss_pred CCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
.++++.|+|++|.++..++.. +++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+. +|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-TCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc-CCCEEE
Confidence 378999999999998544433 899999999999999 88889999999999999999999 8999999998 899999
Q ss_pred ccCCcccccCCCCCCC---------CCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeE
Q 009858 170 LRKNRFHGTIPETFPK---------GNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240 (523)
Q Consensus 170 L~~n~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 240 (523)
+++|.+.+.+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+.+ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9999888888887654 455555555555554 444445555555555555555542 33344444444444
Q ss_pred EeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchh
Q 009858 241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQE 320 (523)
Q Consensus 241 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
++++|.+.+..|..+ ..
T Consensus 235 ~Ls~n~~~~~~p~~~--~~------------------------------------------------------------- 251 (328)
T 4fcg_A 235 DLRGCTALRNYPPIF--GG------------------------------------------------------------- 251 (328)
T ss_dssp ECTTCTTCCBCCCCT--TC-------------------------------------------------------------
T ss_pred ECcCCcchhhhHHHh--cC-------------------------------------------------------------
Confidence 444444443333322 22
Q ss_pred HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCC
Q 009858 321 VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD 389 (523)
Q Consensus 321 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 389 (523)
+++|++|++++|.+.+.+|..+..+++|++|+|++|++.+.+|..++.+++|+.+++..+.+.
T Consensus 252 ------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 ------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 456666677777666677777778888888888888888888888888888888888877655
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2e-28 Score=236.10 Aligned_cols=249 Identities=22% Similarity=0.287 Sum_probs=197.1
Q ss_pred CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCC--CCccccCCCCCcEEEC
Q 009858 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS--VPRSLLNCANLQVLDL 218 (523)
Q Consensus 141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L 218 (523)
+.++++++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777787777 7776543 3788888888888855555678888888888888888632 2556667888888888
Q ss_pred CCCcCCCCchHhhhcCCCCCeEEeccccccCcCC-CccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccc
Q 009858 219 GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR-DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE 297 (523)
Q Consensus 219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~ 297 (523)
++|.+. .+|..+..+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.+.+..+.. +
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~--------------- 146 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTRVAFNGI-F--------------- 146 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEEECTTSCCEECSTTT-T---------------
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEEECCCCcCCccchhh-c---------------
Confidence 888887 466668888888888888888876544 233 56888999999998887443322 1
Q ss_pred ccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCc-CcchhhcCcccCCeeeCcCCcccccCCccccCCC
Q 009858 298 NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT 376 (523)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 376 (523)
..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..++
T Consensus 147 ---------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 147 ---------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp ---------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ---------------------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 226788999999999986 5788899999999999999999988899999999
Q ss_pred CCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCC-CcccCCccCCCCCCCCC
Q 009858 377 DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQF-ATFSSDSYGGNLGLCGF 439 (523)
Q Consensus 377 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~-~~~~~~~~~gn~~lc~~ 439 (523)
+|++|+|++|.+++..+..+..+++|+.|++++|++++..|.. ..+ ..+....+.+|+..|++
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 9999999999999888888999999999999999999887754 233 35677777888776654
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.3e-29 Score=244.81 Aligned_cols=250 Identities=24% Similarity=0.250 Sum_probs=179.1
Q ss_pred CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCC-ccChhhHh-------hcccCCcEEEccCCcccccCCCCC--
Q 009858 114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS-GTIPECIG-------NFSKSLRVLDLRKNRFHGTIPETF-- 183 (523)
Q Consensus 114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~~L~~L~L~~n~l~~~~p~~~-- 183 (523)
++|+.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. .+. +|++|++++|.+++..|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHH
Confidence 3455556666665 445544433 666777777763 34555554 455 67777777777777777665
Q ss_pred CCCCCCCEEECcCCCCCCCCCccccCC-----CCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC--Cccc
Q 009858 184 PKGNNLTTLNFNGNELVGSVPRSLLNC-----ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR--DYEA 256 (523)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~ 256 (523)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+ ....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6777778888877777765 6666655 778888888887777666777777888888888777654321 1111
Q ss_pred cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCC
Q 009858 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLS 336 (523)
Q Consensus 257 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 336 (523)
...+++|++|++++|.++ .++.. ....+..+++|++|+++
T Consensus 197 ~~~l~~L~~L~L~~N~l~-~~~~~---------------------------------------~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGME-TPSGV---------------------------------------CSALAAARVQLQGLDLS 236 (312)
T ss_dssp TTSCTTCCEEECTTSCCC-CHHHH---------------------------------------HHHHHHTTCCCSEEECT
T ss_pred hccCCCCCEEECCCCcCc-chHHH---------------------------------------HHHHHhcCCCCCEEECC
Confidence 255788888888888876 22211 01122336889999999
Q ss_pred CCccCcCcc-hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 337 KNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 337 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
+|.+++..| ..+..+++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999997665 45667899999999999999 7787766 8999999999999977 55 8899999999999999985
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=3.1e-29 Score=256.15 Aligned_cols=336 Identities=18% Similarity=0.142 Sum_probs=248.6
Q ss_pred HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC----CCC-
Q 009858 40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA----PSS- 114 (523)
Q Consensus 40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~- 114 (523)
+..+++|++|++++|.+.... ... +...+..+++|++|++++|.+++..+. .++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~------~~~---------------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEAR------CKD---------------ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHH------HHH---------------HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred HhhcCCccEEEccCCCCCHHH------HHH---------------HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 556677888888888754311 000 011122358999999999998763321 133
Q ss_pred ---CCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHhhc----ccCCcEEEccCCcccccC----
Q 009858 115 ---NMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIGNF----SKSLRVLDLRKNRFHGTI---- 179 (523)
Q Consensus 115 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l----~~~L~~L~L~~n~l~~~~---- 179 (523)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 457888999999999999999986656655542 126999999999998643
Q ss_pred CCCCCCCCCCCEEECcCCCCCCCCCcccc-----CCCCCcEEECCCCcCCCC----chHhhhcCCCCCeEEeccccccCc
Q 009858 180 PETFPKGNNLTTLNFNGNELVGSVPRSLL-----NCANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 180 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566778999999999998754444443 367999999999999864 577888999999999999987543
Q ss_pred CCCccc---cccCCCCcEEeccCccCCCC----CchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858 251 LRDYEA---DYYFSKLRILDLSNNNFTGS----LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323 (523)
Q Consensus 251 ~~~~~~---~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (523)
...... ...+++|++|++++|.+++. ++ ..+..++.|+.++++.+.... .....
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~------------------~~~~~ 303 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGD------------------EGARL 303 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCCCHH------------------HHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCCCch------------------HHHHH
Confidence 211110 12478999999999998743 33 236668889999888663221 11111
Q ss_pred HH-----hhcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCcccccCCccccC-----CCCCCEEeCCCCcCC
Q 009858 324 MK-----ILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSLGD-----LTDLESLDLSSNVLD 389 (523)
Q Consensus 324 ~~-----~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~ 389 (523)
+. ..++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|+|++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 11 236999999999999865 4666778899999999999998765544432 679999999999998
Q ss_pred C----cCChhhcCCCCCCeEECCCCcCccc
Q 009858 390 G----VIPRELTRLTFLAVLNLSRNKLEGR 415 (523)
Q Consensus 390 ~----~~~~~l~~l~~L~~L~Ls~N~l~~~ 415 (523)
+ .+|..+..+++|++|++++|++++.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 6 6788888999999999999999854
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.7e-29 Score=242.19 Aligned_cols=265 Identities=21% Similarity=0.205 Sum_probs=168.1
Q ss_pred CccEEEccCCCCccCCC---CCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 94 NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 94 ~L~~L~L~~n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
.++..+++.+.+..... ..+++|++|++++|.+++..|..|.++++|++|++++|.+++..| +..+. +|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEEC
Confidence 34445555555432221 124567777777777776666677777777777777777764333 55665 6777777
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 777776433 225677777777777644332 356677777777777765565666777777777777776654
Q ss_pred CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (523)
.+..+. ..+++|++|++++|.+++ ++.. ..+++|
T Consensus 160 ~~~~~~-~~l~~L~~L~L~~N~l~~-~~~~--------------------------------------------~~l~~L 193 (317)
T 3o53_A 160 NFAELA-ASSDTLEHLNLQYNFIYD-VKGQ--------------------------------------------VVFAKL 193 (317)
T ss_dssp EGGGGG-GGTTTCCEEECTTSCCCE-EECC--------------------------------------------CCCTTC
T ss_pred cHHHHh-hccCcCCEEECCCCcCcc-cccc--------------------------------------------cccccC
Confidence 433321 245677777777776652 1110 014667
Q ss_pred ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCC-CcCChhhcCCCCCCeEECCC
Q 009858 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD-GVIPRELTRLTFLAVLNLSR 409 (523)
Q Consensus 331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~ 409 (523)
++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++++
T Consensus 194 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777777777 34444777777888888888777 45666777778888888888777 56667777777777777774
Q ss_pred C-cCcccCC
Q 009858 410 N-KLEGRIP 417 (523)
Q Consensus 410 N-~l~~~~p 417 (523)
| .++|..|
T Consensus 272 ~~~l~~~~~ 280 (317)
T 3o53_A 272 VKKLTGQNE 280 (317)
T ss_dssp HHHHHSSSS
T ss_pred chhccCCch
Confidence 3 4444333
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.1e-25 Score=234.91 Aligned_cols=242 Identities=26% Similarity=0.295 Sum_probs=160.6
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
++|++|++++|.++.. |..+++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+. +|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~l-p~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~-~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPS-GLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCC-CCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCT-TCCEEECCS
T ss_pred CCCcEEEecCCCCCCC-CCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCC-CcCEEECCC
Confidence 5666666666666533 3355666666666666653 333 4566666666666666 4444 222 566666666
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+.+...
T Consensus 131 N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 131 NQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC
Confidence 66663 3332 2566666666666653 332 23556666666666653 33 345566666666666553221
Q ss_pred CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (523)
.+++|+.|++++|.++ .+|. .+++|+.
T Consensus 199 ------~~~~L~~L~L~~N~l~-~l~~----------------------------------------------~~~~L~~ 225 (622)
T 3g06_A 199 ------LPSELYKLWAYNNRLT-SLPA----------------------------------------------LPSGLKE 225 (622)
T ss_dssp ------CCTTCCEEECCSSCCS-SCCC----------------------------------------------CCTTCCE
T ss_pred ------ccchhhEEECcCCccc-ccCC----------------------------------------------CCCCCCE
Confidence 1356666666666655 3331 1478999
Q ss_pred ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
|++++|.+++ +| ..+++|+.|+|++|.++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++
T Consensus 226 L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 226 LIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred EEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 9999999994 56 46689999999999999 5665 6789999999999999 6688899999999999999999
Q ss_pred cccCCC
Q 009858 413 EGRIPE 418 (523)
Q Consensus 413 ~~~~p~ 418 (523)
++.+|.
T Consensus 297 ~~~~~~ 302 (622)
T 3g06_A 297 SERTLQ 302 (622)
T ss_dssp CHHHHH
T ss_pred CCcCHH
Confidence 987765
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.9e-29 Score=241.39 Aligned_cols=249 Identities=22% Similarity=0.235 Sum_probs=183.4
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCC-CcCchhhh-------CCCCcCEEEccCCcCCccChhhH--hh
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFI-GEIPRLIC-------NTSTIEILDLSNNSLSGTIPECI--GN 160 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~l--~~ 160 (523)
.++|+.|++++|.+ .+|.. ...|+.|++++|.+. ...|..+. ++++|++|++++|.+++.+|..+ ..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 46788888888888 44443 344788888888773 34555554 68888888888888887788776 56
Q ss_pred cccCCcEEEccCCcccccCCCCCCCC-----CCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC--chHhh--
Q 009858 161 FSKSLRVLDLRKNRFHGTIPETFPKG-----NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT--FPHWL-- 231 (523)
Q Consensus 161 l~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l-- 231 (523)
+. +|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 120 l~-~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GP-DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SC-CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CC-CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 65 788888888888866 6666655 7888888888888877777888888888888888887654 33444
Q ss_pred hcCCCCCeEEeccccccCcCCCc-cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcccccc
Q 009858 232 GTLRELQVLILRSNKFYGHLRDY-EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED 310 (523)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 310 (523)
..+++|++|++++|.+.+..... .....+++|++|++++|.+++..|...+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------- 250 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD--------------------------- 250 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC---------------------------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh---------------------------
Confidence 77888888888888876321111 11135678888888888887544321111
Q ss_pred ceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 009858 311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390 (523)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 390 (523)
.+++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus 251 ---------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 ---------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ---------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ---------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 1577888999999998 7777665 8899999999999865 66 8899999999999999885
Q ss_pred c
Q 009858 391 V 391 (523)
Q Consensus 391 ~ 391 (523)
.
T Consensus 311 ~ 311 (312)
T 1wwl_A 311 S 311 (312)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.4e-27 Score=225.59 Aligned_cols=239 Identities=21% Similarity=0.192 Sum_probs=196.5
Q ss_pred CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECc
Q 009858 116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN 195 (523)
Q Consensus 116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 195 (523)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44567777777655556667788999999999999977778898887 89999999999987665 8899999999999
Q ss_pred CCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCC
Q 009858 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG 275 (523)
Q Consensus 196 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (523)
+|.+++ +...++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCc
Confidence 999873 23458999999999999865543 46889999999999987766555 568999999999999885
Q ss_pred CCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCC
Q 009858 276 SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR 355 (523)
Q Consensus 276 ~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 355 (523)
..+..++ ..+++|++|++++|.+++. +. ...+++|+
T Consensus 159 ~~~~~~~------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~ 194 (317)
T 3o53_A 159 VNFAELA------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK 194 (317)
T ss_dssp EEGGGGG------------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred ccHHHHh------------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCC
Confidence 4333221 1267899999999999854 43 33589999
Q ss_pred eeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 356 LLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 356 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
+|+|++|++++ +|..+..+++|++|+|++|++++ +|..+..+++|+.|++++|+++
T Consensus 195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 99999999995 55558999999999999999995 5777899999999999999998
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-27 Score=242.10 Aligned_cols=234 Identities=22% Similarity=0.204 Sum_probs=111.9
Q ss_pred CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194 (523)
Q Consensus 115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (523)
+|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+. +|++|+|++|.+++..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 44444444444444444455555555555555555553332 44444 45555555555553322 145555555
Q ss_pred cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..+..+. ..+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCccc
Confidence 55555433222 234555555555555544444455555555555555554443332221 12444445555444443
Q ss_pred CCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccC
Q 009858 275 GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSL 354 (523)
Q Consensus 275 ~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 354 (523)
+. |.. ..+++|+.|+|++|.+++ +|..+..+++|
T Consensus 183 ~~-~~~--------------------------------------------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L 216 (487)
T 3oja_A 183 DV-KGQ--------------------------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (487)
T ss_dssp EE-ECC--------------------------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred cc-ccc--------------------------------------------ccCCCCCEEECCCCCCCC-CCHhHcCCCCc
Confidence 21 100 003445555555555553 22235555555
Q ss_pred CeeeCcCCcccccCCccccCCCCCCEEeCCCCcCC-CcCChhhcCCCCCCeEEC
Q 009858 355 RLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD-GVIPRELTRLTFLAVLNL 407 (523)
Q Consensus 355 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L 407 (523)
+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 217 ~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 666666655553 4444555555666666666555 344444444544444444
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2e-25 Score=211.63 Aligned_cols=227 Identities=22% Similarity=0.195 Sum_probs=149.9
Q ss_pred EEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCc
Q 009858 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK 222 (523)
Q Consensus 143 L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 222 (523)
.+..+.+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 4554332 256666666666665555556666666666666666665555556666666666666666
Q ss_pred CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC-CchHHHhcccccccccccccccccc
Q 009858 223 MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS-LPAMFFKNMKAMTDIGEAADENKSK 301 (523)
Q Consensus 223 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~l~~~~~~~~~~ 301 (523)
+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. +|.. +
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~------------------- 145 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-F------------------- 145 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-G-------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-h-------------------
Confidence 665555566666666666666666655444333 4566777777777766531 2322 1
Q ss_pred ccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCC----eeeCcCCcccccCCccccCCCC
Q 009858 302 YMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR----LLNLSQNILSGNIPSSLGDLTD 377 (523)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~ 377 (523)
..+++|++|++++|.+++..+..+..+++|+ +|++++|.+++..+..+. ..+
T Consensus 146 -----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~ 201 (276)
T 2z62_A 146 -----------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIR 201 (276)
T ss_dssp -----------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCC
T ss_pred -----------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCc
Confidence 1256777777777777766666666666666 889999999866555554 458
Q ss_pred CCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC
Q 009858 378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419 (523)
Q Consensus 378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 419 (523)
|++|+|++|++++..+..|..+++|+.|++++|++++..|..
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 999999999999887778899999999999999999877754
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1e-28 Score=252.32 Aligned_cols=322 Identities=17% Similarity=0.155 Sum_probs=159.7
Q ss_pred CCccEEEccCCCCccCCCC----CCCCCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHhhccc-
Q 009858 93 KNLEYLDLRSNLLQGPVPA----PSSNMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSK- 163 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~----~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~- 163 (523)
++|++|++++|+++..... .+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+....+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566666666666543322 15666666766666653 23445566666677777666666444444444332
Q ss_pred ---CCcEEEccCCcccc----cCCCCCCCCCCCCEEECcCCCCCCCCCccc-----cCCCCCcEEECCCCcCCCC----c
Q 009858 164 ---SLRVLDLRKNRFHG----TIPETFPKGNNLTTLNFNGNELVGSVPRSL-----LNCANLQVLDLGNNKMKDT----F 227 (523)
Q Consensus 164 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~ 227 (523)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 36667776666663 335556666666677776666653322222 1244566666666666543 2
Q ss_pred hHhhhcCCCCCeEEeccccccCcCCCcccc---ccCCCCcEEeccCccCCCCC---chHHHhcccccccccccccccccc
Q 009858 228 PHWLGTLRELQVLILRSNKFYGHLRDYEAD---YYFSKLRILDLSNNNFTGSL---PAMFFKNMKAMTDIGEAADENKSK 301 (523)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~---p~~~~~~l~~L~~l~~~~~~~~~~ 301 (523)
+..+..+++|++|++++|.+.+........ ...++|++|++++|.+++.. -...+..++.|+.++++.+.....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 444555666666666666654322211100 12446666666666665321 012344556666666655432111
Q ss_pred ccC---ccc---cccceEE-----Eecch----hHHHHHhhcccccccCCCCccCcCcchhhcC-----cccCCeeeCcC
Q 009858 302 YMG---ETY---YEDSVTL-----IIKRQ----EVKLMKILTIFTTIDLSKNSFHGEIPELMGK-----LHSLRLLNLSQ 361 (523)
Q Consensus 302 ~~~---~~~---~~~~~~~-----~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~ 361 (523)
... ... ......+ .+... ....+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 000 000 0000000 00000 1122333455666666666554332222221 24566666666
Q ss_pred Cccccc----CCccccCCCCCCEEeCCCCcCCCcCChhhcC-----CCCCCeEECCCCcCcc
Q 009858 362 NILSGN----IPSSLGDLTDLESLDLSSNVLDGVIPRELTR-----LTFLAVLNLSRNKLEG 414 (523)
Q Consensus 362 n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~ 414 (523)
|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|.+++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 655543 2344445566666666666655443333321 4456666666666553
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=236.96 Aligned_cols=225 Identities=21% Similarity=0.177 Sum_probs=187.2
Q ss_pred CchhhhCC----CCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCc
Q 009858 130 IPRLICNT----STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205 (523)
Q Consensus 130 ~~~~~~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 205 (523)
+|..+..+ ++|++|+|++|.+++..|..+..+. +|++|+|++|.+++..| |..+++|++|++++|.+++.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--- 95 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL--- 95 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC---
Confidence 34445444 4899999999999977778898887 89999999999997766 88999999999999998743
Q ss_pred cccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcc
Q 009858 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM 285 (523)
Q Consensus 206 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 285 (523)
...++|++|++++|.+.+..+. .+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..|..+..
T Consensus 96 --~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~-- 166 (487)
T 3oja_A 96 --LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA-- 166 (487)
T ss_dssp --EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG--
T ss_pred --CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh--
Confidence 2348999999999999876554 46889999999999988777665 66899999999999998655544321
Q ss_pred ccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365 (523)
Q Consensus 286 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 365 (523)
.+++|+.|+|++|.+++. |. ...+++|+.|+|++|.++
T Consensus 167 ----------------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 167 ----------------------------------------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp ----------------------------------------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred ----------------------------------------hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCC
Confidence 267899999999999955 33 336899999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 366 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
+.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++
T Consensus 205 ~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 205 FMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 654 458999999999999999996 5667889999999999999998
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.6e-25 Score=207.24 Aligned_cols=229 Identities=19% Similarity=0.167 Sum_probs=154.2
Q ss_pred EEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccc
Q 009858 97 YLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH 176 (523)
Q Consensus 97 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~ 176 (523)
.++..+..++..+....++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+. +|++|++++|.++
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccC
Confidence 344555555443333355677777777777766666777778888888888877754455666666 6888888888777
Q ss_pred ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC-chHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858 177 GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT-FPHWLGTLRELQVLILRSNKFYGHLRDYE 255 (523)
Q Consensus 177 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 255 (523)
+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~----- 164 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----- 164 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-----
Confidence 76667777777888888887777766555677777777777777777653 466666666666666665554322
Q ss_pred ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc-ccc
Q 009858 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT-TID 334 (523)
Q Consensus 256 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~ 334 (523)
+...+..+.. ++.+. .|+
T Consensus 165 ----------------------~~~~~~~l~~---------------------------------------L~~l~l~L~ 183 (276)
T 2z62_A 165 ----------------------YCTDLRVLHQ---------------------------------------MPLLNLSLD 183 (276)
T ss_dssp ----------------------CGGGGHHHHT---------------------------------------CTTCCEEEE
T ss_pred ----------------------CHHHhhhhhh---------------------------------------ccccceeee
Confidence 2111222111 11222 678
Q ss_pred CCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCC
Q 009858 335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIP 393 (523)
Q Consensus 335 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 393 (523)
+++|.+++..+..+ ...+|++|+|++|.+++..+..|..+++|++|+|++|.+....+
T Consensus 184 ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 184 LSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 88888885444444 44589999999999997666678899999999999999986543
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.4e-24 Score=200.00 Aligned_cols=206 Identities=25% Similarity=0.267 Sum_probs=150.1
Q ss_pred CcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEC
Q 009858 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDL 218 (523)
Q Consensus 139 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 218 (523)
..+++++++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4677888888877 6776543 36788888888777666667777777888888777777555555677777777777
Q ss_pred CCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccc
Q 009858 219 GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298 (523)
Q Consensus 219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~ 298 (523)
++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~--------------------------------------- 131 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DS--------------------------------------- 131 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TT---------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--Cc---------------------------------------
Confidence 7777765555555666666666666665543333222 12
Q ss_pred cccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCC
Q 009858 299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL 378 (523)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 378 (523)
+++|++|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|
T Consensus 132 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 132 ----------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 4566666677777765555567788899999999999987767778889999
Q ss_pred CEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858 379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP 417 (523)
Q Consensus 379 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 417 (523)
++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999998777788889999999999999886654
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1e-23 Score=220.03 Aligned_cols=269 Identities=22% Similarity=0.226 Sum_probs=213.8
Q ss_pred HhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCCcEEEccC
Q 009858 44 LFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISN 123 (523)
Q Consensus 44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~ 123 (523)
.+++.|+++++.+..++. ... ......++..+.+..+.. .+++|++|+|++|.+++.. ..+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~---~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD---CLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCS---CCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCC-CCCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccCh---hhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCC-CCCCCCCEEECcC
Confidence 357888999888775443 222 223344555555544333 3689999999999998644 4899999999999
Q ss_pred CcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCC
Q 009858 124 NKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSV 203 (523)
Q Consensus 124 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 203 (523)
|.+++. |. .+++|+.|++++|+++ .+|..+ . +|++|++++|.+++ +|. .+.+|+.|++++|.+++ +
T Consensus 111 N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~l---~-~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 111 NPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVLP---P-GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCCCCC-CC---CCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CcCCCC-CC---CCCCcCEEECCCCCCC-cCCCCC---C-CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 999864 43 5789999999999998 677643 4 89999999999985 454 34689999999999985 5
Q ss_pred CccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHh
Q 009858 204 PRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFK 283 (523)
Q Consensus 204 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 283 (523)
| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.... . .+++|+.|++++|.++ .+|..
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~-----~~~~L~~L~Ls~N~L~-~lp~~--- 239 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A-----LPSGLKELIVSGNRLT-SLPVL--- 239 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C-----CCTTCCEEECCSSCCS-CCCCC---
T ss_pred c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C-----CCCCCCEEEccCCccC-cCCCC---
Confidence 5 457999999999999985 443 3579999999999987433 2 2589999999999998 35511
Q ss_pred ccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCc
Q 009858 284 NMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI 363 (523)
Q Consensus 284 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 363 (523)
+++|+.|+|++|.++ .+|. .+++|+.|+|++|.
T Consensus 240 -------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 240 -------------------------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred -------------------------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence 578999999999999 5665 67899999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC
Q 009858 364 LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT 400 (523)
Q Consensus 364 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 400 (523)
++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99 7888999999999999999999998888776654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.6e-23 Score=197.60 Aligned_cols=205 Identities=25% Similarity=0.272 Sum_probs=165.4
Q ss_pred CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858 114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN 193 (523)
Q Consensus 114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (523)
.+.+.++++++.++. +|..+. ++|++|++++|++++..+..+..+. +|++|++++|.++...+..|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 467899999999984 565543 6899999999999955555788887 899999999999977777789999999999
Q ss_pred CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccC
Q 009858 194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF 273 (523)
Q Consensus 194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 273 (523)
+++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~------------ 157 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--DKLT------------ 157 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCT------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc--cCCc------------
Confidence 99999997777788999999999999999998888889999999999999998765444333 3344
Q ss_pred CCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCccc
Q 009858 274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHS 353 (523)
Q Consensus 274 ~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 353 (523)
+|+.|++++|.+++..+..+..+++
T Consensus 158 -------------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 158 -------------------------------------------------------SLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp -------------------------------------------------------TCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -------------------------------------------------------ccceeEecCCcCcEeChhHhccCCC
Confidence 4455555555555444555677788
Q ss_pred CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCc
Q 009858 354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391 (523)
Q Consensus 354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 391 (523)
|++|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 88888888888866666788888899999999887654
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-23 Score=198.79 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=118.8
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+++|+.|++++|.++...... +++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+. +|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEEC
Confidence 467788888887776433222 67777777777777642 3566777777777777777744444456665 6777777
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 77777766666667777777777777777755555666777777777777777765555566677777777777776665
Q ss_pred CCCccccccCCCCcEEeccCccCC
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
.+..+ ..+++|+.|++++|.+.
T Consensus 197 ~~~~~--~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 197 PDGVF--DRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTT--TTCTTCCEEECCSSCBC
T ss_pred CHHHH--hCCcCCCEEEccCCCcc
Confidence 55443 44666666666666554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.8e-23 Score=197.75 Aligned_cols=184 Identities=21% Similarity=0.204 Sum_probs=164.1
Q ss_pred CCCCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
.++++++++++++.++..++...++++.|++++|.+++..+..|.++++|++|++++|.++ .++.. ..+. +|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~-~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLP-VLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCT-TCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCC-cCCEEEC
Confidence 4689999999999999777666889999999999999888899999999999999999998 55554 5666 8999999
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999999 7788899999999999999999987778899999999999999999987778889999999999999999876
Q ss_pred CCCccccccCCCCcEEeccCccCCCCCchHH
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMF 281 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 281 (523)
.+..+ ..+++|+.|++++|.++ .+|..+
T Consensus 164 ~~~~~--~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 164 PAGLL--NGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp CTTTT--TTCTTCCEEECCSSCCC-CCCTTT
T ss_pred CHHHh--cCcCCCCEEECCCCcCC-ccChhh
Confidence 66555 56899999999999998 677554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-24 Score=203.07 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=117.0
Q ss_pred CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858 93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR 171 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~ 171 (523)
.++..+++..+.+....... +++|+.|++++|.+.. + ..+..+++|++|++++|.+++ ++ .+..+. +|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~-~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-IS-ALKELT-NLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CG-GGTTCT-TCCEEECT
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-ch-hhcCCC-CCCEEECC
Confidence 34555556666655443333 7788888888887763 2 246778888888888888773 43 566666 78888888
Q ss_pred CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858 172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL 251 (523)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 251 (523)
+|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 88887666666777788888888888877666666777778888888887777666656667777777777777665444
Q ss_pred CCccccccCCCCcEEeccCccCC
Q 009858 252 RDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
+..+ ..+++|++|++++|.++
T Consensus 174 ~~~~--~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 174 EGVF--DKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTTT--TTCTTCCEEECCSSCCS
T ss_pred HHHh--cCCccCCEEECCCCcCC
Confidence 4333 33444555554444444
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=204.12 Aligned_cols=231 Identities=22% Similarity=0.234 Sum_probs=173.3
Q ss_pred CCcCEEEccCCcCCccChhh---HhhcccCCcEEEccCCcccccCCCCC--CCCCCCCEEECcCCCCCCCCC----cccc
Q 009858 138 STIEILDLSNNSLSGTIPEC---IGNFSKSLRVLDLRKNRFHGTIPETF--PKGNNLTTLNFNGNELVGSVP----RSLL 208 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~---l~~l~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~ 208 (523)
..++.+.+.++.++...-.. +..+. +|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35677777777665221111 12233 68888888888888888877 788888889998888886544 3445
Q ss_pred CCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc--CCCccccccCCCCcEEeccCccCCCCCchHHHhccc
Q 009858 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH--LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMK 286 (523)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 286 (523)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+.......+++|++|++++|.++ .++...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~----- 216 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVC----- 216 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHH-----
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHH-----
Confidence 788899999999988877778888888999999998886542 111111245789999999999886 333211
Q ss_pred cccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCc---ccCCeeeCcCCc
Q 009858 287 AMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKL---HSLRLLNLSQNI 363 (523)
Q Consensus 287 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~ 363 (523)
...+..+++|++|+|++|.+++..|..+..+ ++|++|+|++|+
T Consensus 217 ----------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 217 ----------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp ----------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred ----------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence 1123347889999999999998778777666 699999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 364 LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 364 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 263 l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 263 LE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99 6777664 8999999999999975 33 6788999999999999973
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4e-23 Score=196.68 Aligned_cols=204 Identities=25% Similarity=0.275 Sum_probs=166.1
Q ss_pred hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCC
Q 009858 159 GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ 238 (523)
Q Consensus 159 ~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 238 (523)
..+. ++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+ .+.+++|+
T Consensus 7 ~~l~-~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVA-SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp ECST-TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred cccC-CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3444 7999999999998 5665554 589999999999998778889999999999999999885433 27889999
Q ss_pred eEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecc
Q 009858 239 VLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR 318 (523)
Q Consensus 239 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
+|++++|.+.. +|..+ ..+++|++|++++|.++ .+|...|.
T Consensus 81 ~L~Ls~N~l~~-l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~----------------------------------- 121 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLG--QTLPALTVLDVSFNRLT-SLPLGALR----------------------------------- 121 (290)
T ss_dssp EEECCSSCCSS-CCCCT--TTCTTCCEEECCSSCCC-CCCSSTTT-----------------------------------
T ss_pred EEECCCCcCCc-Cchhh--ccCCCCCEEECCCCcCc-ccCHHHHc-----------------------------------
Confidence 99999999874 34433 56889999999999988 44432222
Q ss_pred hhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858 319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR 398 (523)
Q Consensus 319 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 398 (523)
.+++|++|+|++|.+++..+..+..+++|+.|+|++|+++...+..|..+++|++|+|++|+++ .+|..+..
T Consensus 122 -------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 122 -------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp -------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred -------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 2678889999999999777777888999999999999999666667788999999999999998 56667777
Q ss_pred CCCCCeEECCCCcCccc
Q 009858 399 LTFLAVLNLSRNKLEGR 415 (523)
Q Consensus 399 l~~L~~L~Ls~N~l~~~ 415 (523)
++.|+.+++++|++.+.
T Consensus 194 ~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TCCCSEEECCSCCBCCS
T ss_pred cccCCeEEeCCCCccCc
Confidence 88999999999999754
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.1e-24 Score=214.75 Aligned_cols=176 Identities=20% Similarity=0.184 Sum_probs=92.5
Q ss_pred EEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCc----hhhhCCC-CcCEEEccCCcCCccChhhHhhc-----ccC
Q 009858 98 LDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIP----RLICNTS-TIEILDLSNNSLSGTIPECIGNF-----SKS 164 (523)
Q Consensus 98 L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~~ 164 (523)
++++.|.+++.+|.. .++|++|++++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ . +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-N 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-T
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-C
Confidence 456666666655543 4446666666666665554 5556666 66666666666665555555554 3 5
Q ss_pred CcEEEccCCcccccCCCCC----CCC-CCCCEEECcCCCCCCCCCccc----cC-CCCCcEEECCCCcCCCCc----hHh
Q 009858 165 LRVLDLRKNRFHGTIPETF----PKG-NNLTTLNFNGNELVGSVPRSL----LN-CANLQVLDLGNNKMKDTF----PHW 230 (523)
Q Consensus 165 L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~----~~~ 230 (523)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666666666664443322 222 566666666666654443332 22 246666666666655322 223
Q ss_pred hhcCC-CCCeEEeccccccCcCCCccc--cccC-CCCcEEeccCccCC
Q 009858 231 LGTLR-ELQVLILRSNKFYGHLRDYEA--DYYF-SKLRILDLSNNNFT 274 (523)
Q Consensus 231 l~~l~-~L~~L~l~~n~l~~~~~~~~~--~~~l-~~L~~L~l~~n~l~ 274 (523)
+..++ +|++|++++|.+.+..+..+. .... ++|++|++++|.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 33333 555555555555433322110 0112 35555555555544
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.8e-24 Score=211.25 Aligned_cols=252 Identities=19% Similarity=0.246 Sum_probs=145.9
Q ss_pred CccEEEccCCCCccCCCCCC--CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCcc-ChhhHhhcccCCcEEEc
Q 009858 94 NLEYLDLRSNLLQGPVPAPS--SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT-IPECIGNFSKSLRVLDL 170 (523)
Q Consensus 94 ~L~~L~L~~n~l~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~~L~~L~L 170 (523)
.++.++++++.+.......+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+. +|++|++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEEC
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeC
Confidence 46677777776652111112 5666666666666654443 33456666666666665533 555555554 5666666
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCC-CCCC-CCCccccCCCCCcEEECCCC-cCCCC-chHhhhcCCCCCeEEecccc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGN-ELVG-SVPRSLLNCANLQVLDLGNN-KMKDT-FPHWLGTLRELQVLILRSNK 246 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~ 246 (523)
++|.+++..+..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++. ++..+..++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----------- 194 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----------- 194 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC-----------
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc-----------
Confidence 666555444444555555555555555 3432 13333444555555555555 44422 233344444
Q ss_pred ccCcCCCccccccCCCCcEEeccCcc--CC-CCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858 247 FYGHLRDYEADYYFSKLRILDLSNNN--FT-GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323 (523)
Q Consensus 247 l~~~~~~~~~~~~l~~L~~L~l~~n~--l~-~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (523)
++|++|++++|. ++ +.+| ..
T Consensus 195 --------------~~L~~L~l~~~~~~~~~~~l~-------------------------------------------~~ 217 (336)
T 2ast_B 195 --------------ETITQLNLSGYRKNLQKSDLS-------------------------------------------TL 217 (336)
T ss_dssp --------------TTCCEEECCSCGGGSCHHHHH-------------------------------------------HH
T ss_pred --------------cCCCEEEeCCCcccCCHHHHH-------------------------------------------HH
Confidence 045555555542 22 1111 12
Q ss_pred HHhhcccccccCCCCc-cCcCcchhhcCcccCCeeeCcCCc-ccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCC
Q 009858 324 MKILTIFTTIDLSKNS-FHGEIPELMGKLHSLRLLNLSQNI-LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTF 401 (523)
Q Consensus 324 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 401 (523)
+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++......+. ..
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~ 294 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EA 294 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HH
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hh
Confidence 2336788888888888 666777778888999999999995 33322235788999999999999 5433222222 23
Q ss_pred CCeEECCCCcCcccCCC
Q 009858 402 LAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 402 L~~L~Ls~N~l~~~~p~ 418 (523)
++.|++++|++++..|.
T Consensus 295 l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 295 LPHLQINCSHFTTIARP 311 (336)
T ss_dssp STTSEESCCCSCCTTCS
T ss_pred CcceEEecccCccccCC
Confidence 66677899999988775
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.2e-24 Score=212.70 Aligned_cols=259 Identities=19% Similarity=0.197 Sum_probs=188.4
Q ss_pred EEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh----hhHhhcccCCcEEEccCCcccccCCCCCCCC-----CC
Q 009858 118 VFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP----ECIGNFSKSLRVLDLRKNRFHGTIPETFPKG-----NN 188 (523)
Q Consensus 118 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l-----~~ 188 (523)
.+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++.+|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888877777779999999999986555 5566664369999999999987766666654 88
Q ss_pred CCEEECcCCCCCCCCCccc----cCC-CCCcEEECCCCcCCCCchHhhhc-----CCCCCeEEeccccccCcCCCccc--
Q 009858 189 LTTLNFNGNELVGSVPRSL----LNC-ANLQVLDLGNNKMKDTFPHWLGT-----LRELQVLILRSNKFYGHLRDYEA-- 256 (523)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~~-- 256 (523)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+.. .++|++|++++|.+.+.......
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999987666543 444 89999999999998776655543 36899999999988753322211
Q ss_pred cccCC-CCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh-ccccccc
Q 009858 257 DYYFS-KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL-TIFTTID 334 (523)
Q Consensus 257 ~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ 334 (523)
...++ +|++|++++|.+++..+..+... +... ++|++|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---------------------------------------l~~~~~~L~~L~ 202 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKF---------------------------------------LASIPASVTSLD 202 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH---------------------------------------HHTSCTTCCEEE
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHH---------------------------------------HHhCCCCCCEEE
Confidence 12344 89999999999885555432211 1123 4788888
Q ss_pred CCCCccCcC----cchhhcC-cccCCeeeCcCCcccccCC----ccccCCCCCCEEeCCCCcCCCcCC-------hhhcC
Q 009858 335 LSKNSFHGE----IPELMGK-LHSLRLLNLSQNILSGNIP----SSLGDLTDLESLDLSSNVLDGVIP-------RELTR 398 (523)
Q Consensus 335 Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~-------~~l~~ 398 (523)
|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+ ..+..
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 999888853 3444544 4589999999998876443 345677889999999998554433 34567
Q ss_pred CCCCCeEECCCCcCccc
Q 009858 399 LTFLAVLNLSRNKLEGR 415 (523)
Q Consensus 399 l~~L~~L~Ls~N~l~~~ 415 (523)
+++|+.||+++|++...
T Consensus 283 l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEEEECTTSCBCCGG
T ss_pred CCceEEEecCCCcCCCc
Confidence 77888899999988755
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.8e-25 Score=218.92 Aligned_cols=249 Identities=17% Similarity=0.231 Sum_probs=149.3
Q ss_pred CchhhhCCCCcCEEEccCCcCCccChhh----HhhcccCCcEEEccCCc---ccccCCCCC-------CCCCCCCEEECc
Q 009858 130 IPRLICNTSTIEILDLSNNSLSGTIPEC----IGNFSKSLRVLDLRKNR---FHGTIPETF-------PKGNNLTTLNFN 195 (523)
Q Consensus 130 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~ 195 (523)
++..+..+++|++|+|++|.+++..+.. +..+. +|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3344555555666666665555433332 22343 55666655542 222233222 456667777777
Q ss_pred CCCCCC----CCCccccCCCCCcEEECCCCcCCCCchHh----hhcC---------CCCCeEEeccccccC-cCCCc-cc
Q 009858 196 GNELVG----SVPRSLLNCANLQVLDLGNNKMKDTFPHW----LGTL---------RELQVLILRSNKFYG-HLRDY-EA 256 (523)
Q Consensus 196 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~l~~-~~~~~-~~ 256 (523)
+|.+.. .++..+..+++|++|+|++|.+....+.. +..+ ++|++|++++|.+.. ..+.. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777665 34556666777777777777765333332 3333 677777777776642 22211 11
Q ss_pred cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCC
Q 009858 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLS 336 (523)
Q Consensus 257 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 336 (523)
...+++|+.|++++|.++..-...... ..+..+++|+.|+|+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------~~l~~~~~L~~L~Ls 224 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGLAYCQELKVLDLQ 224 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTGGGCTTCCEEECC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------HHhhcCCCccEEECc
Confidence 234667777777777665110000000 012235778888888
Q ss_pred CCccC----cCcchhhcCcccCCeeeCcCCccccc----CCccc--cCCCCCCEEeCCCCcCCC----cCChhh-cCCCC
Q 009858 337 KNSFH----GEIPELMGKLHSLRLLNLSQNILSGN----IPSSL--GDLTDLESLDLSSNVLDG----VIPREL-TRLTF 401 (523)
Q Consensus 337 ~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~ 401 (523)
+|.++ ..+|..+..+++|++|+|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++
T Consensus 225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 88875 45677778888888888888888764 45555 337888888888888887 366666 56788
Q ss_pred CCeEECCCCcCcccCC
Q 009858 402 LAVLNLSRNKLEGRIP 417 (523)
Q Consensus 402 L~~L~Ls~N~l~~~~p 417 (523)
|+.|++++|++++..|
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 8888998888886553
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=8.5e-23 Score=189.09 Aligned_cols=206 Identities=20% Similarity=0.223 Sum_probs=142.2
Q ss_pred CCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC-CCCCCCccccCCCCCcEEECCC-CcCCCCc
Q 009858 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE-LVGSVPRSLLNCANLQVLDLGN-NKMKDTF 227 (523)
Q Consensus 150 l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~ 227 (523)
++ .+|. + .++|++|++++|++++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |.+.+..
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 44 5665 2 2367888888888876666677778888888888886 7655556777888888888887 7777655
Q ss_pred hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCc---EEeccCc-cCCCCCchHHHhcccccccccccccccccccc
Q 009858 228 PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR---ILDLSNN-NFTGSLPAMFFKNMKAMTDIGEAADENKSKYM 303 (523)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~ 303 (523)
+..|..+++|++|++++|.+.+ +|. + ..+++|+ +|++++| .++ .+|...+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~-------------------- 152 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQ-------------------- 152 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTT--------------------
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-c--ccccccccccEEECCCCcchh-hcCccccc--------------------
Confidence 5677778888888888887765 333 2 4455565 7888877 665 33432222
Q ss_pred CccccccceEEEecchhHHHHHhhcccc-cccCCCCccCcCcchhhcCcccCCeeeCcCCc-ccccCCccccCC-CCCCE
Q 009858 304 GETYYEDSVTLIIKRQEVKLMKILTIFT-TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI-LSGNIPSSLGDL-TDLES 380 (523)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~ 380 (523)
.+++|+ .|++++|.++ .+|......++|++|+|++|+ +++..+..|..+ ++|++
T Consensus 153 ----------------------~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 153 ----------------------GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp ----------------------TTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred ----------------------chhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 256677 7788888877 444433333788888888884 776666777888 88888
Q ss_pred EeCCCCcCCCcCChhhcCCCCCCeEECCCCc
Q 009858 381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNK 411 (523)
Q Consensus 381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 411 (523)
|++++|++++..+. .+++|+.|+++++.
T Consensus 210 L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 210 LDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred EECCCCccccCChh---HhccCceeeccCcc
Confidence 88888888755443 56678888887663
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=6e-25 Score=231.64 Aligned_cols=319 Identities=10% Similarity=0.051 Sum_probs=195.0
Q ss_pred CCCCccEEEccCCCCccCCC-------CCCCCCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHh
Q 009858 91 PWKNLEYLDLRSNLLQGPVP-------APSSNMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIG 159 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~-------~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 159 (523)
.+++|++|+|++|.+++... ..+++|+.|++++|.+++ .++..+.++++|++|++++|.+. .+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence 46788888888888765422 227888888888888762 33445567888888888888887 5777788
Q ss_pred hcccCCcEEEccCCccc---ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCC
Q 009858 160 NFSKSLRVLDLRKNRFH---GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLR 235 (523)
Q Consensus 160 ~l~~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~ 235 (523)
.+. +|++|+++.+... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+... ..+..++
T Consensus 241 ~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhh-HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 876 7888888753322 23334566677788888777533 3566667778888888888887654332 3356777
Q ss_pred CCCeEEeccccccCcCCCccccccCCCCcEEeccC-----------ccCCCCCchHHHhccccccccccccccccccccC
Q 009858 236 ELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN-----------NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304 (523)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~ 304 (523)
+|++|+++++...+..+... ..+++|++|++++ +.+++.....+...+++|+.+++..+........
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHH--HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CCCEEeccCccCHHHHHHHH--HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 78888777332111111111 3456677777772 3444322233345566666666532222111000
Q ss_pred c--cccccceEEEe---------cc-----hhHHHHHhhcccccccCCCCc--cCcCcchhh-cCcccCCeeeCcCCccc
Q 009858 305 E--TYYEDSVTLII---------KR-----QEVKLMKILTIFTTIDLSKNS--FHGEIPELM-GKLHSLRLLNLSQNILS 365 (523)
Q Consensus 305 ~--~~~~~~~~~~~---------~~-----~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~l~ 365 (523)
. ........+.. .. .....+..+++|++|++++|. +++..+..+ ..+++|++|+|++|+++
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence 0 00000111111 11 122334557888888887543 554444444 34778888888888887
Q ss_pred c-cCCccccCCCCCCEEeCCCCcCCCc-CChhhcCCCCCCeEECCCCcCcc
Q 009858 366 G-NIPSSLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 366 ~-~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
+ .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|+++.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5 3445557788888888888887654 33444678888888888888764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.4e-23 Score=197.70 Aligned_cols=224 Identities=19% Similarity=0.208 Sum_probs=146.7
Q ss_pred CCccEEEccCCCCccCCCC------CCCCCcEEEccCCcCCCcCchhh--hCCCCcCEEEccCCcCCccCh----hhHhh
Q 009858 93 KNLEYLDLRSNLLQGPVPA------PSSNMRVFLISNNKFIGEIPRLI--CNTSTIEILDLSNNSLSGTIP----ECIGN 160 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~ 160 (523)
..++.+.+.++.++..... .+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4567777777766532111 15668888888888887777776 778888888888888875444 23344
Q ss_pred cccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCC--C--CccccCCCCCcEEECCCCcCCCCchH----hhh
Q 009858 161 FSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS--V--PRSLLNCANLQVLDLGNNKMKDTFPH----WLG 232 (523)
Q Consensus 161 l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~ 232 (523)
+. +|++|++++|.+.+..+..|..+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .+.
T Consensus 144 ~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 144 KP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred cc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 54 788888888888777777788888888888888876532 1 2233567788888888887752 333 245
Q ss_pred cCCCCCeEEeccccccCcCCCccc-cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccc
Q 009858 233 TLRELQVLILRSNKFYGHLRDYEA-DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDS 311 (523)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 311 (523)
.+++|++|++++|.+.+..|..+. ...
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~---------------------------------------------------- 249 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMW---------------------------------------------------- 249 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCC----------------------------------------------------
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccC----------------------------------------------------
Confidence 667777777777776655433221 011
Q ss_pred eEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 009858 312 VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390 (523)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 390 (523)
+++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus 250 ---------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 ---------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ---------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ---------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 245555566666665 4454442 5777788888777743 33 5677788888888887764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.3e-22 Score=186.53 Aligned_cols=120 Identities=24% Similarity=0.282 Sum_probs=75.0
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL 407 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 407 (523)
++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 34444445555555444445667778888888888888666667888888888888888888777778888888888888
Q ss_pred CCCcCcccCCCCCCCCc------ccCCccCCCCCCCCCCCCCCCCCC
Q 009858 408 SRNKLEGRIPEGNQFAT------FSSDSYGGNLGLCGFPLSKNCSND 448 (523)
Q Consensus 408 s~N~l~~~~p~~~~~~~------~~~~~~~gn~~lc~~~~~~~c~~~ 448 (523)
++|++++..+....+.. .......|+ .+|+.|....|..+
T Consensus 187 ~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 187 FGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred eCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 88888865333211111 111122333 35666777777654
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.6e-22 Score=183.36 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=160.7
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
...++++++++.++..++...++++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+. +|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCC
Confidence 3567899999999876666678999999999999988888999999999999999999977777788887 899999999
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (523)
|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99998888889999999999999999997777778999999999999999997777789999999999999999987776
Q ss_pred CccccccCCCCcEEeccCccCCCC
Q 009858 253 DYEADYYFSKLRILDLSNNNFTGS 276 (523)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~n~l~~~ 276 (523)
..+ ..+++|+.|++++|.+.+.
T Consensus 173 ~~~--~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAF--DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTT--TTCTTCCEEECCSCCBCTT
T ss_pred HHH--hCCCCCCEEEeeCCceeCC
Confidence 655 6689999999999999755
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=5.5e-24 Score=207.83 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=149.2
Q ss_pred CCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCc-CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 93 KNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
++++.|++++|.+.+..+.. +++|++|++++|.+++. ++..+..+++|++|++++|.+++..|..+..+. +|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT-TCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC-CCCEEE
Confidence 78999999999999877765 89999999999998865 778899999999999999999988899999987 899999
Q ss_pred ccCC-ccccc-CCCCCCCCCCCCEEECcCC-CCCCC-CCccccCCC-CCcEEECCCC--cCC-CCchHhhhcCCCCCeEE
Q 009858 170 LRKN-RFHGT-IPETFPKGNNLTTLNFNGN-ELVGS-VPRSLLNCA-NLQVLDLGNN--KMK-DTFPHWLGTLRELQVLI 241 (523)
Q Consensus 170 L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~ 241 (523)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67753 5666778999999999999 88754 566788899 9999999999 455 45677888899999999
Q ss_pred ecccc-ccCcCCCccccccCCCCcEEeccCcc
Q 009858 242 LRSNK-FYGHLRDYEADYYFSKLRILDLSNNN 272 (523)
Q Consensus 242 l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 272 (523)
+++|. +.+..+..+ ..+++|++|++++|.
T Consensus 229 l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKNDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCGGGGGGG--GGCTTCCEEECTTCT
T ss_pred CCCCCcCCHHHHHHH--hCCCCCCEeeCCCCC
Confidence 99998 554444433 557888888888875
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.1e-23 Score=209.80 Aligned_cols=235 Identities=20% Similarity=0.280 Sum_probs=152.5
Q ss_pred CCCCcEEEccCCcCCCcCc----hhhhCCCCcCEEEccCC---cCCccChhhH-------hhcccCCcEEEccCCcccc-
Q 009858 113 SSNMRVFLISNNKFIGEIP----RLICNTSTIEILDLSNN---SLSGTIPECI-------GNFSKSLRVLDLRKNRFHG- 177 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~~L~~L~L~~n~l~~- 177 (523)
+++|+.|++++|.++...+ ..+..+++|++|+|++| ++++.+|..+ ..+. +|++|+|++|.+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHH
Confidence 4555555555555554322 23445666666666664 3334445444 3444 67777777776664
Q ss_pred ---cCCCCCCCCCCCCEEECcCCCCCCCCCcc----ccCC---------CCCcEEECCCCcCC-CCch---HhhhcCCCC
Q 009858 178 ---TIPETFPKGNNLTTLNFNGNELVGSVPRS----LLNC---------ANLQVLDLGNNKMK-DTFP---HWLGTLREL 237 (523)
Q Consensus 178 ---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L 237 (523)
.+|..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|.+. ..++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 24445556667777777777665332222 2233 77888888887776 3344 456677788
Q ss_pred CeEEeccccccC-----cCCCccccccCCCCcEEeccCccCCC----CCchHHHhccccccccccccccccccccCcccc
Q 009858 238 QVLILRSNKFYG-----HLRDYEADYYFSKLRILDLSNNNFTG----SLPAMFFKNMKAMTDIGEAADENKSKYMGETYY 308 (523)
Q Consensus 238 ~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 308 (523)
++|++++|.+.. ..+..+ ..+++|+.|++++|.++. .+|.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~----------------------------- 238 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI----------------------------- 238 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-----------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-----------------------------
Confidence 888888887652 122122 557888888888887751 1221
Q ss_pred ccceEEEecchhHHHHHhhcccccccCCCCccCcC----cchhhc--CcccCCeeeCcCCcccc----cCCccc-cCCCC
Q 009858 309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMG--KLHSLRLLNLSQNILSG----NIPSSL-GDLTD 377 (523)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~~ 377 (523)
.+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ .++++
T Consensus 239 --------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 239 --------------ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp --------------HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred --------------HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 122367888999999998865 456663 48999999999999997 477766 66899
Q ss_pred CCEEeCCCCcCCCcCC
Q 009858 378 LESLDLSSNVLDGVIP 393 (523)
Q Consensus 378 L~~L~Ls~n~l~~~~~ 393 (523)
|++|+|++|.+++..+
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 9999999999997764
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.1e-21 Score=188.65 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=44.3
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL 407 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 407 (523)
++|+.|++++|.+++ ++. +..+++|++|++++|.+++.. . +..+++|++|+|++|++++.. .+..+++|+.|++
T Consensus 151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l 224 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEc
Confidence 444455555555542 222 455556666666666665322 2 555666666666666666443 2556666666666
Q ss_pred CCCcCc
Q 009858 408 SRNKLE 413 (523)
Q Consensus 408 s~N~l~ 413 (523)
++|+++
T Consensus 225 ~~N~i~ 230 (308)
T 1h6u_A 225 TNQTIT 230 (308)
T ss_dssp EEEEEE
T ss_pred cCCeee
Confidence 666665
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.6e-22 Score=184.82 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=118.7
Q ss_pred CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc-CCccChhhHhhcccCCcEEEccC-CcccccCCCCCCCCCCC
Q 009858 112 PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS-LSGTIPECIGNFSKSLRVLDLRK-NRFHGTIPETFPKGNNL 189 (523)
Q Consensus 112 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~L~~-n~l~~~~p~~~~~l~~L 189 (523)
..++|++|++++|++++..+..|.++++|++|++++|+ +++..+..+..+. +|++|++++ |.+++..+..|.++++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 44466666666666665555566666666666666665 5522233444554 566666665 66665544555556666
Q ss_pred CEEECcCCCCCCCCCccccCCCCCc---EEECCCC-cCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCc-
Q 009858 190 TTLNFNGNELVGSVPRSLLNCANLQ---VLDLGNN-KMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR- 264 (523)
Q Consensus 190 ~~L~L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~- 264 (523)
++|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|.. +++|+
T Consensus 108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------------------------l~~L~~ 159 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------------------------LCNETL 159 (239)
T ss_dssp CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------------------------TBSSEE
T ss_pred CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc--------------------------hhccee
Confidence 666666665553 343 44455554 5555555 444333333444 45555
Q ss_pred EEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCc-cCcC
Q 009858 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNS-FHGE 343 (523)
Q Consensus 265 ~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~ 343 (523)
.|++++|.++ .+|...+. .++|+.|++++|. +++.
T Consensus 160 ~L~l~~n~l~-~i~~~~~~-------------------------------------------~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 160 TLKLYNNGFT-SVQGYAFN-------------------------------------------GTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp EEECCSCCCC-EECTTTTT-------------------------------------------TCEEEEEECTTCTTCCEE
T ss_pred EEEcCCCCCc-ccCHhhcC-------------------------------------------CCCCCEEEcCCCCCcccC
Confidence 5555555554 44432221 2467777788884 7755
Q ss_pred cchhhcCc-ccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCc
Q 009858 344 IPELMGKL-HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387 (523)
Q Consensus 344 ~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 387 (523)
.+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 196 ~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 56677788 889999999988884 4443 57788888888763
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.3e-21 Score=183.29 Aligned_cols=124 Identities=20% Similarity=0.307 Sum_probs=60.2
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
+++|+.|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+. +|++|++++|.+++. + .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~-~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLT-KITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCC-SCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCC-CCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 3444444444444432 22 3455555555555555555 3333 44444 455555555555532 2 34555555555
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
++++|.+++ ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 555555543 22 24555555555555555543222 44444444444444444
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=6.4e-21 Score=186.85 Aligned_cols=181 Identities=17% Similarity=0.096 Sum_probs=118.3
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh-HhhcccCCc-EEEccCC
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC-IGNFSKSLR-VLDLRKN 173 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~-~L~L~~n 173 (523)
++++.++++++.++....+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|.. |..+. +|+ .+.+..|
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCC
Confidence 56788888887654444678888888888888666677888888888888888876566653 44555 454 4566678
Q ss_pred cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC-CcCCCCchHhhhcCC-CCCeEEeccccccCcC
Q 009858 174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN-NKMKDTFPHWLGTLR-ELQVLILRSNKFYGHL 251 (523)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~ 251 (523)
+++...|..|..+++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.+....
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 88877777888888888888888888766555666666777777755 445433334444443 4666666666665443
Q ss_pred CCccccccCCCCcEEeccCccCCCCCchH
Q 009858 252 RDYEADYYFSKLRILDLSNNNFTGSLPAM 280 (523)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 280 (523)
+..+ ...+|+.++++++...+.+|..
T Consensus 171 ~~~f---~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 171 NSAF---NGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp TTSS---TTEEEEEEECTTCTTCCCCCTT
T ss_pred hhhc---cccchhHHhhccCCcccCCCHH
Confidence 3332 2345566666543222244443
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.2e-20 Score=184.87 Aligned_cols=240 Identities=22% Similarity=0.223 Sum_probs=165.9
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccCCcccccCC-CCCCCCCCCCE-EE
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIP-ETFPKGNNLTT-LN 193 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~ 193 (523)
+.++.++++++ .+|..+ .+++++|+|++|+|+ .+|. .|..+. +|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56777888877 556555 357888888888888 5654 466776 78888888888765444 46778877765 55
Q ss_pred CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccc-cccCcCCCccccccCCCCcEEeccCcc
Q 009858 194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN-KFYGHLRDYEADYYFSKLRILDLSNNN 272 (523)
Q Consensus 194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~ 272 (523)
+..|++....|..|..+++|++|++++|.+....+..+....++..|++.++ .+....+..+. .....++.|++++|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh-hcchhhhhhcccccc
Confidence 6678888777778888888888888888887665556666677778887664 44333333331 223467888888888
Q ss_pred CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCC-CccCcCcchhhcCc
Q 009858 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSK-NSFHGEIPELMGKL 351 (523)
Q Consensus 273 l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l 351 (523)
++ .+|...|. ..+|+.+++++ |.++...++.|..+
T Consensus 166 i~-~i~~~~f~-------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 166 IQ-EIHNSAFN-------------------------------------------GTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp CC-EECTTSST-------------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred cc-CCChhhcc-------------------------------------------ccchhHHhhccCCcccCCCHHHhccC
Confidence 87 45544332 35677888875 56664444677888
Q ss_pred ccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCC
Q 009858 352 HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410 (523)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 410 (523)
++|++|+|++|+++. +|. ..+.+|+.|.+.++.-...+| .+.++++|+.++++++
T Consensus 202 ~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 202 SGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 999999999999884 443 234566777766655444666 3778888999988764
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.6e-20 Score=168.40 Aligned_cols=175 Identities=18% Similarity=0.164 Sum_probs=147.6
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcc
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF 175 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l 175 (523)
+.++++++.++..+....++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+. +|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC
Confidence 5677888888776666678899999999999877777788999999999999999844444556776 899999999999
Q ss_pred cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858 176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255 (523)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 255 (523)
++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence 9777777889999999999999998777777889999999999999998777777889999999999999765
Q ss_pred ccccCCCCcEEeccCccCCCCCchH
Q 009858 256 ADYYFSKLRILDLSNNNFTGSLPAM 280 (523)
Q Consensus 256 ~~~~l~~L~~L~l~~n~l~~~~p~~ 280 (523)
..+++|++|+++.|.++|.+|..
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeecc
Confidence 33678899999999999988854
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.6e-20 Score=166.78 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=93.5
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
+.++.+++.++. +|..+ .++|++|++++|++++..+..+..+. +|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 455666666653 33332 34677777777777643333445555 677777777777755555566677777777777
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCee
Confidence 77765555556667777777777777665555556666667777776666655444333 44556666666666544
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.3e-21 Score=206.01 Aligned_cols=317 Identities=11% Similarity=0.061 Sum_probs=176.0
Q ss_pred CCCCcEEEccCCcCCCc----CchhhhCCCCcCEEEccCCcCC----ccChhhHhhcccCCcEEEccCCcccccCCCCCC
Q 009858 113 SSNMRVFLISNNKFIGE----IPRLICNTSTIEILDLSNNSLS----GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP 184 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~ 184 (523)
+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+..++ +|++|++++|.+.+ +|..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHHHh
Confidence 44555555555544333 2222334455555555555543 12233333333 45555555555442 333444
Q ss_pred CCCCCCEEECcCCCCC---CCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCC
Q 009858 185 KGNNLTTLNFNGNELV---GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261 (523)
Q Consensus 185 ~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 261 (523)
.+++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+..... ....++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHH-HHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHH-HHHhCc
Confidence 4555555555432211 12233455566666666666432 356777778888899999888754322111 125678
Q ss_pred CCcEEeccCccCCCCCchHHHhcccccccccccc----------ccccc-cccCc--ccccc--ceEEEecc---hhHHH
Q 009858 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAA----------DENKS-KYMGE--TYYED--SVTLIIKR---QEVKL 323 (523)
Q Consensus 262 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~----------~~~~~-~~~~~--~~~~~--~~~~~~~~---~~~~~ 323 (523)
+|+.|+++ +.+.......+...+++|+.|++.. +.... ..... ..+.. ........ .....
T Consensus 319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 89999888 4444333345567778888888873 21111 00000 00111 11121122 22222
Q ss_pred H-HhhcccccccCC----CCccCcC-----cchhhcCcccCCeeeCcCCc--ccccCCcccc-CCCCCCEEeCCCCcCCC
Q 009858 324 M-KILTIFTTIDLS----KNSFHGE-----IPELMGKLHSLRLLNLSQNI--LSGNIPSSLG-DLTDLESLDLSSNVLDG 390 (523)
Q Consensus 324 ~-~~~~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~Ls~n~l~~ 390 (523)
+ ..+++|+.|+++ .|.+++. ++..+..+++|++|+|++|. +++..+..+. .+++|++|+|++|.+++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 2 337788888886 5667643 33446678889999997654 5554444443 47899999999999886
Q ss_pred c-CChhhcCCCCCCeEECCCCcCcccC-CCC-CCCCcccCCccCCCC
Q 009858 391 V-IPRELTRLTFLAVLNLSRNKLEGRI-PEG-NQFATFSSDSYGGNL 434 (523)
Q Consensus 391 ~-~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~-~~~~~~~~~~~~gn~ 434 (523)
. ++..+.++++|++|++++|++++.. +.. ..+..+..+.+.+|.
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3 4455678899999999999987442 211 234556666666665
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.2e-20 Score=191.39 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=22.0
Q ss_pred CeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858 355 RLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR 398 (523)
Q Consensus 355 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 398 (523)
+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55555555555 34444444555555555555555555544443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.4e-19 Score=186.59 Aligned_cols=182 Identities=26% Similarity=0.416 Sum_probs=124.5
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243 (523)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (523)
+|++|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 46666666666654 444332 45666666666665 344 335666666666666664 444 433 66666666
Q ss_pred cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323 (523)
Q Consensus 244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (523)
+|.+.+ +|. .+++|+.|++++|.+++ +|..
T Consensus 129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~~------------------------------------------- 158 (571)
T 3cvr_A 129 NNQLTM-LPE-----LPALLEYINADNNQLTM-LPEL------------------------------------------- 158 (571)
T ss_dssp SSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------------
T ss_pred CCcCCC-CCC-----cCccccEEeCCCCccCc-CCCc-------------------------------------------
Confidence 666655 222 35677777777777763 4420
Q ss_pred HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCC-------CEEeCCCCcCCCcCChhh
Q 009858 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL-------ESLDLSSNVLDGVIPREL 396 (523)
Q Consensus 324 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~~~~l 396 (523)
+++|+.|+|++|.+++ +|. +. ++|+.|+|++|.++ .+|. |.. +| +.|+|++|+++ .+|..+
T Consensus 159 ---l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 159 ---PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 4677888888888885 665 54 88999999999998 6666 554 67 99999999999 467777
Q ss_pred cCCCCCCeEECCCCcCcccCCC
Q 009858 397 TRLTFLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 397 ~~l~~L~~L~Ls~N~l~~~~p~ 418 (523)
..+++|+.|+|++|++++.+|.
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHH
Confidence 7899999999999999988774
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.7e-19 Score=162.02 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=116.2
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcc
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF 175 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l 175 (523)
+.++++++.++..+....++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..+. +|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcC
Confidence 5678888888765555567888888888888877777788888888888888888866677777776 788888888888
Q ss_pred cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
+...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8666666777888888888888887777777778888888888888877666666777777777777777653
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=162.89 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=88.6
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCc-hhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~ 174 (523)
+++++++|.++..+....+.+++|++++|.+++..+ ..|.++++|++|++++|.+++..+..+..+. +|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence 467777777765443335556666666666665533 3455666666666666666644444555554 56666666666
Q ss_pred ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
+++..+..|..+++|++|++++|++++..|..|.++++|++|+|++|.+++..|..|..+++|+.|++++|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6655555555666666666666666655555566666666666666666555555555555555555555544
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=3.2e-21 Score=203.28 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=45.7
Q ss_pred HhhcccccccCCCCccCcCcchhhcC-cccCCeeeCcCCcccccCCccc-cCCCCCCEEeCCCCcCCCcCCh-hhcCCCC
Q 009858 325 KILTIFTTIDLSKNSFHGEIPELMGK-LHSLRLLNLSQNILSGNIPSSL-GDLTDLESLDLSSNVLDGVIPR-ELTRLTF 401 (523)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~ 401 (523)
..+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455566666655 444333333333 5566666666666554333333 4456666666666666433222 2234566
Q ss_pred CCeEECCCCcCc
Q 009858 402 LAVLNLSRNKLE 413 (523)
Q Consensus 402 L~~L~Ls~N~l~ 413 (523)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 666666666653
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.2e-19 Score=173.96 Aligned_cols=177 Identities=23% Similarity=0.153 Sum_probs=139.9
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhh-CCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLIC-NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~ 174 (523)
++++++++.++..+....+.++.|+|++|.+++..+..|. ++++|++|+|++|++++..+..+..+. +|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence 5788888888875555577788999999999877777777 889999999999999855556787887 79999999999
Q ss_pred ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhh---hcCCCCCeEEeccccccCcC
Q 009858 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWL---GTLRELQVLILRSNKFYGHL 251 (523)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~~ 251 (523)
++...+..|..+++|++|+|++|++.+..+..|.++++|++|+|++|.+.+..+..+ ..+++|+.|++++|.+.+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 987777788889999999999999988778888899999999999999886544444 56888888888888887544
Q ss_pred CCccccccCCC--CcEEeccCccCCC
Q 009858 252 RDYEADYYFSK--LRILDLSNNNFTG 275 (523)
Q Consensus 252 ~~~~~~~~l~~--L~~L~l~~n~l~~ 275 (523)
+..+ ..++. ++.|++++|.+..
T Consensus 180 ~~~~--~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 180 LTDL--QKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHH--HHSCHHHHTTEECCSSCEEC
T ss_pred HHHh--hhccHhhcceEEecCCCccC
Confidence 3333 34555 4778888888764
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.5e-18 Score=157.57 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=114.7
Q ss_pred CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh-hhHhhcccCCcEEEccC
Q 009858 94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP-ECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~~L~~L~L~~ 172 (523)
.-+.++++++.++..+....++|++|++++|.+++..|..|.++++|++|+|++|+++ .+| ..+..+. +|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~-~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT-QLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCC-CcCEEECCC
Confidence 3567888888887666555788888888888888777778888888888888888887 444 4455665 788888888
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
|++++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8888666666777888888888888877 667777777888888888887776555666677777777777776543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1e-18 Score=166.27 Aligned_cols=168 Identities=20% Similarity=0.287 Sum_probs=139.8
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+++|+.|++++|.+....... +++|+.|++++|.+++..+ +.++++|++|++++|.++ .+| .+..+. +|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~-~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLK-KLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCT-TCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCC-CCCEEEC
Confidence 478999999999987664322 8999999999999986554 889999999999999998 454 477777 8999999
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 99999854 4578889999999999999854 578899999999999999986554 88999999999999988764
Q ss_pred CCCccccccCCCCcEEeccCccCC
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
. ....+++|+.|++++|.+.
T Consensus 194 ~----~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 R----ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G----GGTTCTTCSEEEEEEEEEE
T ss_pred h----hhccCCCCCEEECcCCccc
Confidence 2 2366899999999999887
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=154.91 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=140.6
Q ss_pred CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858 116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194 (523)
Q Consensus 116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (523)
-+.+++++|.++. +|..+ ...+++|++++|++++..|. .+..+. +|++|++++|++++..+..|.++++|++|++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 3689999999984 56555 34678999999999955443 467777 8999999999999888889999999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
++|.+++..+..|.++++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCc
Confidence 9999998888889999999999999999998889999999999999999999998878776 67899999999999998
Q ss_pred CCCchHHH
Q 009858 275 GSLPAMFF 282 (523)
Q Consensus 275 ~~~p~~~~ 282 (523)
+..+..++
T Consensus 167 c~c~l~~l 174 (220)
T 2v70_A 167 CNCYLAWL 174 (220)
T ss_dssp CSGGGHHH
T ss_pred CCCchHHH
Confidence 77665444
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.7e-18 Score=154.69 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=137.7
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..+..+. +|++|+|++|++++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 67899999988 4555543 6899999999999955555788887 899999999999988899999999999999999
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS 276 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (523)
|.++...+..|.++++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence 99997666778999999999999999998889999999999999999999988777666 6689999999999998754
Q ss_pred CchH
Q 009858 277 LPAM 280 (523)
Q Consensus 277 ~p~~ 280 (523)
-...
T Consensus 168 c~l~ 171 (220)
T 2v9t_B 168 CHLK 171 (220)
T ss_dssp GGGH
T ss_pred CccH
Confidence 4433
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=171.77 Aligned_cols=163 Identities=26% Similarity=0.278 Sum_probs=124.5
Q ss_pred CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHh-hcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858 116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIG-NFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194 (523)
Q Consensus 116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (523)
-+.++++++.++. +|..+. ..++.|+|++|++++..+..+. .+. +|++|+|++|++++..+..|..+++|++|+|
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3678888888874 555443 4588899999998854444454 666 7999999999998777778888899999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcccc-ccCCCCcEEeccCccC
Q 009858 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD-YYFSKLRILDLSNNNF 273 (523)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l 273 (523)
++|++....+..|.++++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+.. ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999988777777888899999999999988777888888899999999998887654443311 3578888888888888
Q ss_pred CCCCchHHHh
Q 009858 274 TGSLPAMFFK 283 (523)
Q Consensus 274 ~~~~p~~~~~ 283 (523)
+ .+|...+.
T Consensus 176 ~-~l~~~~~~ 184 (361)
T 2xot_A 176 K-KLPLTDLQ 184 (361)
T ss_dssp C-CCCHHHHH
T ss_pred C-ccCHHHhh
Confidence 7 55644443
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.1e-19 Score=191.41 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=61.7
Q ss_pred hhcccccccCC--C----CccCcC-----cchhhcCcccCCeeeCcCCcccccCCccccC-CCCCCEEeCCCCcCCCcCC
Q 009858 326 ILTIFTTIDLS--K----NSFHGE-----IPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSSNVLDGVIP 393 (523)
Q Consensus 326 ~~~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~ 393 (523)
.+++|+.|+++ + +.+++. ++..+..+++|++|+|++ .+++..+..+.. +++|++|+|++|.+++..+
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 35666777766 3 344421 112245566777777765 455444444443 6778888888887765544
Q ss_pred hhh-cCCCCCCeEECCCCcCcccCCC--CCCCCcccCCccCCCC
Q 009858 394 REL-TRLTFLAVLNLSRNKLEGRIPE--GNQFATFSSDSYGGNL 434 (523)
Q Consensus 394 ~~l-~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~~~~~~~~gn~ 434 (523)
..+ ..+++|++|++++|++++..+. ...+..+..+.+.+|+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 444 5677888888888887533221 1223455555555554
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.3e-18 Score=178.35 Aligned_cols=167 Identities=23% Similarity=0.292 Sum_probs=130.5
Q ss_pred CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858 93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR 171 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~ 171 (523)
..+..+.+..+.+....+.. +++|+.|++++|.+... + .+..+++|+.|+|++|.++ .++. +..+. +|++|+|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~-~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLK-NLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-GGGCT-TCCEEECC
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-hccCC-CCCEEECc
Confidence 45566677777776655544 88899999999988743 3 5888999999999999998 4544 77777 79999999
Q ss_pred CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858 172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL 251 (523)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 251 (523)
+|.+.+ +| .+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 998884 33 68888899999999998875 3 4578889999999999988864 56788888888888888887665
Q ss_pred CCccccccCCCCcEEeccCccCC
Q 009858 252 RDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
+ ...+++|+.|+|++|.+.
T Consensus 170 ~----l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 170 P----LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp G----GTTCTTCCEEECCSSCCC
T ss_pred h----hccCCCCCEEECcCCCCC
Confidence 5 256788888888888776
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.6e-18 Score=163.49 Aligned_cols=140 Identities=23% Similarity=0.319 Sum_probs=71.1
Q ss_pred EEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccc
Q 009858 98 LDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH 176 (523)
Q Consensus 98 L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~ 176 (523)
+.+..+.+++..+.. +++|+.|++++|.+... + .+..+++|++|++++|+++ .++. +..+. +|++|++++|.++
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~-~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LANLK-NLGWLFLDENKVK 103 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEECCSSCCC
T ss_pred HHhcCCCcccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cccCC-CCCEEECCCCcCC
Confidence 334444444332222 55666666666665533 2 3555666666666666665 3333 45554 5666666666555
Q ss_pred ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 177 GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 177 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
+ ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 104 ~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 104 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred C-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 3 22 255555555555555555432 2445555555555555555432 33444444444444444443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.4e-18 Score=178.27 Aligned_cols=168 Identities=20% Similarity=0.301 Sum_probs=134.1
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+++|+.|++++|.+....... +++|+.|+|++|.+.+..+ +..+++|+.|+|++|.++ .+| .+..+. +|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~-~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLK-KLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCT-TCCEEEC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCC-CCCEEEe
Confidence 478888888888887654322 8889999999998886554 788889999999999887 454 677776 7999999
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+.
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 99988853 3577888899999999988754 578888999999999998887655 88888999999999988764
Q ss_pred CCCccccccCCCCcEEeccCccCC
Q 009858 251 LRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
+ ....+++|+.|+|++|.+.
T Consensus 191 -~---~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 -R---ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -G---GGTTCTTCSEEECCSEEEE
T ss_pred -h---HHccCCCCCEEEccCCcCc
Confidence 2 2366888999999998887
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.3e-18 Score=150.77 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=97.4
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+. +|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344455555555554 333 4666677777777777654 33 3566665 67777777777776666677777777777
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCc-CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCc
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNK-MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 271 (523)
++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+.+.. ....+++|+.|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCc
Confidence 777777776666677777777777777776 44 344 5677777777777777765432 2255677777777777
Q ss_pred cCC
Q 009858 272 NFT 274 (523)
Q Consensus 272 ~l~ 274 (523)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 664
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2e-17 Score=151.51 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=137.4
Q ss_pred CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194 (523)
Q Consensus 115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (523)
..+.++.+++.++ .+|..+ .++|++|+|++|.+++..|..+..+. +|++|+|++|+++...+..|..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4567999999887 455544 38999999999999977788888887 8999999999999777778899999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
++|++++..+..|..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCcc
Confidence 999999777778899999999999999998 678889999999999999999987766555 67899999999999988
Q ss_pred CCCc
Q 009858 275 GSLP 278 (523)
Q Consensus 275 ~~~p 278 (523)
+..+
T Consensus 173 c~c~ 176 (229)
T 3e6j_A 173 CECR 176 (229)
T ss_dssp TTBG
T ss_pred CCcc
Confidence 6554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9.5e-18 Score=150.00 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=129.8
Q ss_pred CCCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD 169 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~ 169 (523)
.+++|++|++++|.++...... +++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+. +|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEE
Confidence 4589999999999998544222 899999999999775 334788999999999999999977888899987 899999
Q ss_pred ccCCcccccCCCCCCCCCCCCEEECcCCC-CCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 170 LRKNRFHGTIPETFPKGNNLTTLNFNGNE-LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
+++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 99999998788889999999999999998 65 555 68999999999999999985 44 7889999999999999875
Q ss_pred C
Q 009858 249 G 249 (523)
Q Consensus 249 ~ 249 (523)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.4e-17 Score=155.87 Aligned_cols=166 Identities=25% Similarity=0.339 Sum_probs=111.4
Q ss_pred CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858 93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR 171 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~ 171 (523)
.+++.++++++.+++..... +++|+.|++++|.++. ++ .+..+++|++|++++|+++ .+|. +..+. +|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~-~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLT-KLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCS-SCCEEECC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCC-CCCEEECC
Confidence 45566666666666544222 6777777777777663 33 5677777777777777777 4444 66665 67777777
Q ss_pred CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858 172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL 251 (523)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 251 (523)
+|++++. |. +.. ++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 7777743 32 222 6777777777777642 3477777788888887777653 3 577777788888877777655
Q ss_pred CCccccccCCCCcEEeccCccCC
Q 009858 252 RDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
..+ ..+++|+.|++++|.+.
T Consensus 166 -~~l--~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGL--TRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTS--TTCCCCCEEEEEEEEEE
T ss_pred -HHh--ccCCCCCEEeCCCCccc
Confidence 222 55777788888877776
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2e-18 Score=184.46 Aligned_cols=114 Identities=27% Similarity=0.338 Sum_probs=52.6
Q ss_pred chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCC
Q 009858 131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210 (523)
Q Consensus 131 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 210 (523)
+..|..++.|+.|+|++|.+. .+|..++.+. +|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 444444555555555555554 4444444444 4555555555554 44444444555555555555544 344444445
Q ss_pred CCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
++|++|+|++|.+. .+|..|+.+++|+.|+|++|.+.+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 55555555555443 334444444444444444444443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.9e-20 Score=192.66 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=127.0
Q ss_pred hCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 009858 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ 214 (523)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 214 (523)
..+++|+.|+|++|.++ .+|..++.+. +|+.|++++|......|.. +..+...+..|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 56788999999999997 8999999998 7999998766422122210 011122334555666666666
Q ss_pred EEE-CCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccc
Q 009858 215 VLD-LGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE 293 (523)
Q Consensus 215 ~L~-L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~ 293 (523)
.|+ ++.|.+. .|..+.+.+|.+.... ...|+.|++++|.++ .+|. +.
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~--------~~~L~~L~Ls~n~l~-~lp~--~~---------- 460 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKME--------YADVRVLHLAHKDLT-VLCH--LE---------- 460 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHH--------HTTCSEEECTTSCCS-SCCC--GG----------
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccC--------ccCceEEEecCCCCC-CCcC--cc----------
Confidence 666 4444321 2222333333332111 123666666666665 2442 11
Q ss_pred ccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCcccc
Q 009858 294 AADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373 (523)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 373 (523)
.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .++
T Consensus 461 --------------------------------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 461 --------------------------------QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp --------------------------------GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred --------------------------------ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 1556677777777777 666677777777777777777774 55 577
Q ss_pred CCCCCCEEeCCCCcCCCcC-ChhhcCCCCCCeEECCCCcCcccCCC
Q 009858 374 DLTDLESLDLSSNVLDGVI-PRELTRLTFLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 374 ~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~ 418 (523)
.+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 7777777777777777665 67777777777777777777765553
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.9e-16 Score=140.78 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=95.8
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCch-hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~ 174 (523)
++++++++.++..+.....+|++|++++|.+++..+. .|..+++|++|+|++|++++..|..+..+. +|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCc
Confidence 6788888888654444456788888888877765553 477777888888888887766677777776 67777777777
Q ss_pred ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC
Q 009858 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT 226 (523)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (523)
+++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7777776777777777777777777777777777777777777777777654
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=4.2e-17 Score=145.03 Aligned_cols=114 Identities=23% Similarity=0.332 Sum_probs=91.7
Q ss_pred hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN 406 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 406 (523)
+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 67788889999999888888999999999999999999988888899999999999999999999999999999999999
Q ss_pred CCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858 407 LSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP 440 (523)
Q Consensus 407 Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~ 440 (523)
+++|++++..+.......+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999776532111112222344554555544
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.3e-16 Score=149.27 Aligned_cols=147 Identities=21% Similarity=0.256 Sum_probs=127.1
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858 92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL 170 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L 170 (523)
+++|++|++++|.++...... +++|+.|++++|.+++..+ +.++++|++|++++|+++ .+|.... . +|++|++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~--~-~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS--A-CLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC--S-SCCEEEC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc--C-cccEEEc
Confidence 589999999999998654222 8999999999999996655 899999999999999998 5665433 4 8999999
Q ss_pred cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858 171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 114 ~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999964 3 588999999999999999854 4 688999999999999999876 6788999999999999998655
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.4e-17 Score=176.21 Aligned_cols=191 Identities=23% Similarity=0.225 Sum_probs=115.6
Q ss_pred EEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCc
Q 009858 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK 222 (523)
Q Consensus 143 L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 222 (523)
++++.|.+. ..|..+..+. .|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCC-CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCC-CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 345556665 6677788887 8999999999998 66766778999999999999998 889999999999999999999
Q ss_pred CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccc
Q 009858 223 MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY 302 (523)
Q Consensus 223 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~ 302 (523)
++ .+|..|+.+++|++|+|++|.+. .+|..+ ..+++|+.|+|++|.+++.+|..+...
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~~------------------ 339 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKILTEK------------------ 339 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHHHHH------------------
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHHhhc------------------
Confidence 98 67999999999999999999986 445544 778999999999999987666543211
Q ss_pred cCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCC--------cccccCCccccC
Q 009858 303 MGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN--------ILSGNIPSSLGD 374 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~p~~~~~ 374 (523)
...+..++|++|.+++.+|.. |+.|++++| .+.+..+..+..
T Consensus 340 ------------------------~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 340 ------------------------SVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp ------------------------HHHHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred ------------------------chhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 112234677888888777653 555666665 333333344455
Q ss_pred CCCCCEEeCCCCcCC
Q 009858 375 LTDLESLDLSSNVLD 389 (523)
Q Consensus 375 l~~L~~L~Ls~n~l~ 389 (523)
+..+....+++|-+.
T Consensus 390 l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------CCC
T ss_pred ccccceeeeeccccc
Confidence 556666667777654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.1e-16 Score=155.18 Aligned_cols=260 Identities=13% Similarity=0.171 Sum_probs=120.9
Q ss_pred CCCccEEEccCCCCc--cCCCCCCCCCcEEEccCCcCCCcCchhhhC--------CCCcCEEEccCCcCCccChhhHhhc
Q 009858 92 WKNLEYLDLRSNLLQ--GPVPAPSSNMRVFLISNNKFIGEIPRLICN--------TSTIEILDLSNNSLSGTIPECIGNF 161 (523)
Q Consensus 92 ~~~L~~L~L~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~p~~l~~l 161 (523)
+++|++|||++|++. ......++.++.+.+..|. ..+.+|.+ +++|+.|+|.+ .++..-+.+|..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 366777777777766 2222223334444444442 22334555 66666666666 5552223334444
Q ss_pred ccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC----CCCCCCccccCCCCCc-EEECCCCcCCCCchHhhh----
Q 009858 162 SKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE----LVGSVPRSLLNCANLQ-VLDLGNNKMKDTFPHWLG---- 232 (523)
Q Consensus 162 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~---- 232 (523)
. +|++|++++|.+..+.+..|....++..+.+..+. ........|.++..|+ .+.+.... .++..+.
T Consensus 124 ~-~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~ 199 (329)
T 3sb4_A 124 D-NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGL 199 (329)
T ss_dssp T-TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTC
T ss_pred c-ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhccc
Confidence 4 56666666666655555566665555555544321 1112233444555555 34333221 2222221
Q ss_pred cCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccce
Q 009858 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV 312 (523)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 312 (523)
...++..+.+.++-....... ....+++|+.+++++|.++ .+|...|.+
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~--l~~~~~~L~~l~L~~n~i~-~I~~~aF~~---------------------------- 248 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKL--IRDYMPNLVSLDISKTNAT-TIPDFTFAQ---------------------------- 248 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHH--HHHHCTTCCEEECTTBCCC-EECTTTTTT----------------------------
T ss_pred CccccceEEEeeeecHHHHHH--HHHhcCCCeEEECCCCCcc-eecHhhhhC----------------------------
Confidence 123344444433211000000 0012445555555555544 444433332
Q ss_pred EEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCC-eeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCc
Q 009858 313 TLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR-LLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391 (523)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 391 (523)
+.+|+.++|.+| ++...+..|.++.+|+ .+++.+ .++...+.+|.++++|+.|++++|.++.+
T Consensus 249 --------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 249 --------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp --------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred --------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 333444444444 4433344555555555 555555 44444445555555555555555555555
Q ss_pred CChhhcCCCCCCeEE
Q 009858 392 IPRELTRLTFLAVLN 406 (523)
Q Consensus 392 ~~~~l~~l~~L~~L~ 406 (523)
.+.+|.++++|+.++
T Consensus 313 ~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTCTTCCCCEEE
T ss_pred chhhhcCCcchhhhc
Confidence 555555555555544
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=5.3e-19 Score=183.22 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=90.1
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL 407 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 407 (523)
..|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++ +| .+..+++|+.|+|
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 468999999999995 676 899999999999999999 789999999999999999999997 56 8999999999999
Q ss_pred CCCcCcccC-CCC-CCCCcccCCccCCCCC
Q 009858 408 SRNKLEGRI-PEG-NQFATFSSDSYGGNLG 435 (523)
Q Consensus 408 s~N~l~~~~-p~~-~~~~~~~~~~~~gn~~ 435 (523)
++|.+++.. |.. ..+..+..+.+.+|+.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 999999875 543 4566777777888863
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.8e-15 Score=134.37 Aligned_cols=126 Identities=22% Similarity=0.327 Sum_probs=61.8
Q ss_pred cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcc
Q 009858 96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF 175 (523)
Q Consensus 96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l 175 (523)
++++++++.++..+....++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+. +|++|+|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCcc
Confidence 45666666665433333445555555555554 3344455555555555555555533333444444 455555555555
Q ss_pred cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcC
Q 009858 176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKM 223 (523)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (523)
++..|..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 544444455555555555555555433333444444444444444443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.7e-15 Score=131.57 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=101.9
Q ss_pred ccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858 95 LEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174 (523)
Q Consensus 95 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~ 174 (523)
.+.+++++++++..+....++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+. +|++|++++|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCC
Confidence 46788888888766655578888888888888877777778888888888888888844444456666 78888888888
Q ss_pred ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch
Q 009858 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP 228 (523)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 228 (523)
+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 887666677788888888888888876555556778888888888888776544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=134.38 Aligned_cols=126 Identities=25% Similarity=0.338 Sum_probs=84.4
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
+.+++++|.++ .+|..+ .++|++|++++|.++ .+|..+..+. +|++|++++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46677777766 344433 246777777777776 6676676666 677777777777766666677777777777777
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (523)
|.+++..+..|.++++|++|+|++|.+....+..|..+++|+.|++++|++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 777766666677777777777777777654444566666666666666554
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.5e-16 Score=136.92 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=46.2
Q ss_pred CCccEEEccCCCCc-cCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858 93 KNLEYLDLRSNLLQ-GPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL 168 (523)
Q Consensus 93 ~~L~~L~L~~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L 168 (523)
++|++|++++|.++ +.+|.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+. +|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEE
Confidence 45555555555554 223322 44445555555444433 3344444444455544444433444443343 44444
Q ss_pred EccCCcccccCC-CCCCCCCCCCEEECcCCCCC
Q 009858 169 DLRKNRFHGTIP-ETFPKGNNLTTLNFNGNELV 200 (523)
Q Consensus 169 ~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~ 200 (523)
++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 444444443211 23334444444444444443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.7e-16 Score=134.19 Aligned_cols=132 Identities=23% Similarity=0.228 Sum_probs=81.3
Q ss_pred CCcCEEEccCCcCC-ccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 009858 138 STIEILDLSNNSLS-GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVL 216 (523)
Q Consensus 138 ~~L~~L~L~~n~l~-~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 216 (523)
++|+.|++++|.++ +.+|..+..+. +|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 55666666666665 45565555555 566666666666644 556666666677776666665556555566677777
Q ss_pred ECCCCcCCCCc-hHhhhcCCCCCeEEeccccccCcCC---CccccccCCCCcEEeccCccCC
Q 009858 217 DLGNNKMKDTF-PHWLGTLRELQVLILRSNKFYGHLR---DYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 217 ~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
++++|.+.+.. +..+..+++|+.|++++|.+.+..+ ..+ ..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChh
Confidence 77777666432 2556666667777777666654433 122 45666777777666654
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.1e-15 Score=148.32 Aligned_cols=271 Identities=13% Similarity=0.124 Sum_probs=173.5
Q ss_pred CCCCcEEEccCCcCCCcCchhhhC-CCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCC------
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICN-TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK------ 185 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~------ 185 (523)
+.+++.|.++++- .......+.. +++|++|||++|++. .....-+.+. .++.+.+..|. +.+..|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~-~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYP-NGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSG-GGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeE-EecCcccccc-ccccccccccc---cCHHHhcccccccc
Confidence 6678888887652 1111223444 678888888888876 1111111222 23445555552 33456667
Q ss_pred --CCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc----cCcCCCcccccc
Q 009858 186 --GNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF----YGHLRDYEADYY 259 (523)
Q Consensus 186 --l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~~~ 259 (523)
+++|+.|++.. .++.+.+.+|.++++|+.+++.+|.+....+.+|..+.++..+....+.. ...... ++..
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~--~f~~ 174 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF--AFIE 174 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS--CEEE
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc--cccc
Confidence 88888888888 77766677888888888888888887766667777766666555444221 111111 1234
Q ss_pred CCCCc-EEeccCccCCCCCchHHHhc---cccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccC
Q 009858 260 FSKLR-ILDLSNNNFTGSLPAMFFKN---MKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDL 335 (523)
Q Consensus 260 l~~L~-~L~l~~n~l~~~~p~~~~~~---l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 335 (523)
+..|+ .+.+... +.++...+.. ...+..+...+. ............+++|+.++|
T Consensus 175 ~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~------------------l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 175 GEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK------------------LDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp SCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC------------------CCHHHHHHHHHHCTTCCEEEC
T ss_pred ccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee------------------ecHHHHHHHHHhcCCCeEEEC
Confidence 45555 4444332 2344443332 112222211110 000111122234789999999
Q ss_pred CCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCC-EEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 336 SKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE-SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
++|.++...+..|.++.+|+.|+|.+| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 999999666778999999999999998 7777788999999999 999999 7887888999999999999999999984
Q ss_pred c
Q 009858 415 R 415 (523)
Q Consensus 415 ~ 415 (523)
.
T Consensus 312 I 312 (329)
T 3sb4_A 312 L 312 (329)
T ss_dssp E
T ss_pred c
Confidence 3
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=3.2e-16 Score=133.24 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=48.6
Q ss_pred CCccEEEccCCCCc-cCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858 93 KNLEYLDLRSNLLQ-GPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL 168 (523)
Q Consensus 93 ~~L~~L~L~~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L 168 (523)
++++.|++++|.++ +.+|.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+. +|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEE
Confidence 45555555555554 333322 44555555555555433 3444455555555555555433444444444 45555
Q ss_pred EccCCccccc-CCCCCCCCCCCCEEECcCCCCC
Q 009858 169 DLRKNRFHGT-IPETFPKGNNLTTLNFNGNELV 200 (523)
Q Consensus 169 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~ 200 (523)
++++|.+++. .+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 5555544432 1133444444444444444443
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1e-15 Score=130.06 Aligned_cols=109 Identities=27% Similarity=0.341 Sum_probs=52.2
Q ss_pred CCcCEEEccCCcCC-ccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 009858 138 STIEILDLSNNSLS-GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVL 216 (523)
Q Consensus 138 ~~L~~L~L~~n~l~-~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 216 (523)
++|+.|++++|.++ +.+|..+..+. +|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34444555555444 34444444443 455555555544433 344455555555555555544444444445555555
Q ss_pred ECCCCcCCCC-chHhhhcCCCCCeEEeccccccC
Q 009858 217 DLGNNKMKDT-FPHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 217 ~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
++++|.+.+. .+..+..+++|++|++++|.+.+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 5555555432 22444455555555555554443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=127.72 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=92.8
Q ss_pred cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG 219 (523)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (523)
.+.+++++++++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456677777776 5664432 367777777777776555566777777777777777775555566777777777777
Q ss_pred CCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCc
Q 009858 220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP 278 (523)
Q Consensus 220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 278 (523)
+|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 777776666666777777777777777765555444 457788888888888776554
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=1.4e-13 Score=136.28 Aligned_cols=242 Identities=11% Similarity=0.143 Sum_probs=148.8
Q ss_pred CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194 (523)
Q Consensus 115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (523)
+|+.+.+..+ ++.....+|.++ +|+.+.+.. .++..-+.+|..+. +|+.+++.+|.++.+....|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 5667776655 554555666663 577777765 55523334555555 677777777777755555565 467777777
Q ss_pred cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
..+ +......+|.++++|+.+++..+ +...-..+|.+ .+|+.+.+.. .+.......+ ..+++|+.+++.++.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF--~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAF--YYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTT--TTCTTCCEEEEESSCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHh--hCCCCCCEEEeCCcccc
Confidence 643 55555567777777777777664 33334445555 6777777743 2333333333 55677777777665543
Q ss_pred ----CCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858 275 ----GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK 350 (523)
Q Consensus 275 ----~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 350 (523)
..++...|.+ +++|+.++|.+ .++......|.+
T Consensus 285 ~~~~~~I~~~aF~~------------------------------------------c~~L~~l~l~~-~i~~I~~~aF~~ 321 (401)
T 4fdw_A 285 DDPEAMIHPYCLEG------------------------------------------CPKLARFEIPE-SIRILGQGLLGG 321 (401)
T ss_dssp CCTTCEECTTTTTT------------------------------------------CTTCCEECCCT-TCCEECTTTTTT
T ss_pred CCcccEECHHHhhC------------------------------------------CccCCeEEeCC-ceEEEhhhhhcC
Confidence 0233333332 45556666663 355444567777
Q ss_pred cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC-CCCeEECCCCcC
Q 009858 351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT-FLAVLNLSRNKL 412 (523)
Q Consensus 351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l 412 (523)
+.+|+.+.|..+ ++...+.+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 788888888554 665666778887 888888888877766667777764 567777665554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2e-14 Score=125.83 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=106.3
Q ss_pred hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCC
Q 009858 133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212 (523)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 212 (523)
.+.++.+|+.|++++|+++ .+|. +..+.++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567788999999999988 5654 455544799999999999865 57888999999999999998655555688999
Q ss_pred CcEEECCCCcCCCCchH--hhhcCCCCCeEEeccccccCcCCCc--cccccCCCCcEEeccCccCC
Q 009858 213 LQVLDLGNNKMKDTFPH--WLGTLRELQVLILRSNKFYGHLRDY--EADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 213 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~n~l~ 274 (523)
|++|++++|.+. .+|. .+..+++|+.|++++|.+... +.. .....+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999986 4565 788899999999999988643 332 01256889999999888654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.7e-14 Score=124.90 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=66.9
Q ss_pred CCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh-HhhcccCCc
Q 009858 91 PWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC-IGNFSKSLR 166 (523)
Q Consensus 91 ~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~ 166 (523)
.+.+|++|++++|.++.. +.. .++|+.|++++|.+++. ..|..+++|++|++++|.++ .+|.. +..+. +|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~-~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP-DLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT-TCC
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC-CCC
Confidence 346777777777777643 222 33666666666666543 34555666666666666665 33332 24454 566
Q ss_pred EEEccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCcc----ccCCCCCcEEECCCCc
Q 009858 167 VLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRS----LLNCANLQVLDLGNNK 222 (523)
Q Consensus 167 ~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~ 222 (523)
+|++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666666554 2332 4445555555555555554 22322 4444455555544444
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=6.2e-13 Score=131.73 Aligned_cols=242 Identities=11% Similarity=0.085 Sum_probs=170.3
Q ss_pred CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL 192 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (523)
...++.+.+.+ .++.....+|.++ +|+.+.+..+ ++ .++...+.-. +|+.+.+.. .++.+.+..|.++.+|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 56667776654 3454556677775 7888888766 65 4444333334 688888876 5666677788888888888
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCcc
Q 009858 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272 (523)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 272 (523)
++.+|+++......|. ..+|+.+.+..+ +...-..+|.++++|+.+.+..+ +.......+ .. .+|+.+.+.+ .
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLPN-G 258 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEET-T
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeCC-C
Confidence 8888888766556666 578888888754 55555667888888888888764 333333333 22 5777777743 3
Q ss_pred CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccC-----cCcchh
Q 009858 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFH-----GEIPEL 347 (523)
Q Consensus 273 l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~ 347 (523)
++ .++...|.+ +++|+.+++.+|.+. ...+..
T Consensus 259 i~-~I~~~aF~~------------------------------------------c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 259 VT-NIASRAFYY------------------------------------------CPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp CC-EECTTTTTT------------------------------------------CTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred cc-EEChhHhhC------------------------------------------CCCCCEEEeCCccccCCcccEECHHH
Confidence 43 455444544 455555555555443 345678
Q ss_pred hcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858 348 MGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 348 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
|.++++|+.+.|.+ .++.....+|.++++|+.+.|..| ++.+...+|.++ +|+.+++++|.+.
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 88999999999984 577677789999999999999665 776777889999 9999999999775
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=5.1e-16 Score=138.80 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=63.2
Q ss_pred CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858 93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~ 172 (523)
..++.++++.+.+++..|.. . .+|..|..+++|++|++++|.++ .+| .+..+. +|++|++++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l--------------~-~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~-~L~~L~l~~ 79 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPI--------------E-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGR 79 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTC--------------C-CCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHT-TCCEEEEEE
T ss_pred ccccCcchheeEeccccCcH--------------h-hhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCC-CCCEEECCC
Confidence 45555566666665544431 0 12224444444555555544444 244 444443 455555555
Q ss_pred CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCc
Q 009858 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGH 250 (523)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 250 (523)
|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 80 n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 80 NLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 4444 333333333445555555554442 22 34445555555555555543211 2445555555555555554433
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=5.4e-16 Score=138.65 Aligned_cols=111 Identities=20% Similarity=0.221 Sum_probs=51.1
Q ss_pred hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCC
Q 009858 157 CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE 236 (523)
Q Consensus 157 ~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 236 (523)
.+..+. +|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..+++
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 444444 45555555555543 33 4444455555555555544 344444444555555555555443 23 3444555
Q ss_pred CCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858 237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274 (523)
Q Consensus 237 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (523)
|+.|++++|.+.+..+ ......+++|++|++++|.+.
T Consensus 117 L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccc
Confidence 5555555554432211 001133445555555555443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.6e-13 Score=117.74 Aligned_cols=105 Identities=25% Similarity=0.307 Sum_probs=65.6
Q ss_pred cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG 219 (523)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (523)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456666666666 5665442 256666666666666666666666666666666666665555556666666666666
Q ss_pred CCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 220 NNKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
+|.+.+..+..|..+++|+.|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666555555666666666666666543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=6e-13 Score=115.49 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=63.7
Q ss_pred cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
+.+++++|.++. +|..+ .++|++|+|++|++++..|..+..+. +|++|+|++|++++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 344444444442 33333 24566666666666644455555555 566666666666655555566677777777777
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCCCC
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDT 226 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (523)
|++++..+..|..+++|++|+|++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777655555667777777777777766543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=5.2e-13 Score=116.28 Aligned_cols=104 Identities=25% Similarity=0.313 Sum_probs=67.0
Q ss_pred CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN 220 (523)
Q Consensus 141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 220 (523)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56667777665 6665543 3677777777777766666677777777777777777654444556677777777777
Q ss_pred CcCCCCchHhhhcCCCCCeEEecccccc
Q 009858 221 NKMKDTFPHWLGTLRELQVLILRSNKFY 248 (523)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (523)
|.+.+..+..|..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7766544444666666666666666554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.4e-12 Score=113.60 Aligned_cols=87 Identities=24% Similarity=0.256 Sum_probs=50.8
Q ss_pred CCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEE
Q 009858 138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLD 217 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 217 (523)
++|++|+|++|++++..|..+..+. +|++|+|++|++++..+..|..+++|++|+|++|++.+..+..|..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4555555555555544444555554 566666666666544444456666666666666666644444466666667777
Q ss_pred CCCCcCCC
Q 009858 218 LGNNKMKD 225 (523)
Q Consensus 218 L~~n~l~~ 225 (523)
+++|.+..
T Consensus 112 L~~N~~~c 119 (174)
T 2r9u_A 112 LYNNPWDC 119 (174)
T ss_dssp CCSSCBCT
T ss_pred eCCCCccc
Confidence 77666653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.9e-13 Score=134.04 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=89.2
Q ss_pred CCccEEEccCCCCccCCCC--------CCCCCcEEEccCCcCCCcCchhh-hCCCCcCEEEccCCcCCccChhhHhhc--
Q 009858 93 KNLEYLDLRSNLLQGPVPA--------PSSNMRVFLISNNKFIGEIPRLI-CNTSTIEILDLSNNSLSGTIPECIGNF-- 161 (523)
Q Consensus 93 ~~L~~L~L~~n~l~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l-- 161 (523)
++|++|+|++|.++..... ..++|+.|+|++|.++......+ ..+++|+.|+|++|.+++.....+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5677778877777642221 13567777777777654333222 234567777777777764433443321
Q ss_pred --ccCCcEEEccCCccccc----CCCCCCCCCCCCEEECcCCCCCCC----CCccccCCCCCcEEECCCCcCCCC----c
Q 009858 162 --SKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNFNGNELVGS----VPRSLLNCANLQVLDLGNNKMKDT----F 227 (523)
Q Consensus 162 --~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 227 (523)
.++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 12577777777766532 222334556677777777766532 233455566677777777766532 2
Q ss_pred hHhhhcCCCCCeEEeccccccC
Q 009858 228 PHWLGTLRELQVLILRSNKFYG 249 (523)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~ 249 (523)
+..+...++|++|++++|.+.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 3334455666666666666543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.2e-13 Score=135.61 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=120.0
Q ss_pred CCCCcEEEccCCcCCCcCchhhhC-----CCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCC----
Q 009858 113 SSNMRVFLISNNKFIGEIPRLICN-----TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETF---- 183 (523)
Q Consensus 113 ~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~---- 183 (523)
.++|+.|++++|.++......+.. .++|++|+|++|.+++.....+....++|++|+|++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 678999999999987654444433 37999999999999755444554433389999999999975433333
Q ss_pred -CCCCCCCEEECcCCCCCCC----CCccccCCCCCcEEECCCCcCCCC----chHhhhcCCCCCeEEeccccccCcCCCc
Q 009858 184 -PKGNNLTTLNFNGNELVGS----VPRSLLNCANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKFYGHLRDY 254 (523)
Q Consensus 184 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 254 (523)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+... ++..+...++|++|++++|.+.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457899999999998742 344557789999999999998743 3566777889999999999886432222
Q ss_pred c--ccccCCCCcEEeccCccCCC
Q 009858 255 E--ADYYFSKLRILDLSNNNFTG 275 (523)
Q Consensus 255 ~--~~~~l~~L~~L~l~~n~l~~ 275 (523)
+ .....++|++|++++|.++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 1 11346889999999999873
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=8e-11 Score=116.86 Aligned_cols=310 Identities=12% Similarity=0.056 Sum_probs=173.7
Q ss_pred ccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhh
Q 009858 84 LLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN 160 (523)
Q Consensus 84 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 160 (523)
+-..+|..+.+|+.+.+..+ ++.+.... +.+|+.+++.++ ++.....+|.++.+|+.+.+..+ +...-..+|..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 44567888899999999744 54433332 788999999765 55556677888888888776644 33122333333
Q ss_pred cccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeE
Q 009858 161 FSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240 (523)
Q Consensus 161 l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 240 (523)
. .+....+... ........|.++.+|+.+.+..+. .......|.++.+|+.+++..+ +......+|.++..|+.+
T Consensus 139 ~--~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 C--DFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp C--CCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred c--cccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 3 2333333222 222444567777778888776543 3344566777777777777655 333334556666677766
Q ss_pred EeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccc--cCccccccceEEEecc
Q 009858 241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY--MGETYYEDSVTLIIKR 318 (523)
Q Consensus 241 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 318 (523)
.+..+... ..... ....+|+.+.+.... + .+....+.++..++.+.+......... ................
T Consensus 214 ~~~~~~~~--i~~~~--~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 214 EFPNSLYY--LGDFA--LSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CCCTTCCE--ECTTT--TTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE
T ss_pred ecCCCceE--eehhh--cccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceeccCcee
Confidence 66544321 11111 223455555554321 1 333344455555554443322111000 0000000000000011
Q ss_pred hhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858 319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR 398 (523)
Q Consensus 319 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 398 (523)
.....+..+.+|+.+.+..+ ++......|.++.+|+.++|..+ ++.....+|.++++|+.+.+..+ ++.....+|.+
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 11223445677777777654 44344566778888888888654 66556678888888888888776 66566678888
Q ss_pred CCCCCeEECCCC
Q 009858 399 LTFLAVLNLSRN 410 (523)
Q Consensus 399 l~~L~~L~Ls~N 410 (523)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 888888887543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=3.3e-11 Score=117.53 Aligned_cols=88 Identities=23% Similarity=0.177 Sum_probs=53.8
Q ss_pred hhcccccccCCC-CccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCe
Q 009858 326 ILTIFTTIDLSK-NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV 404 (523)
Q Consensus 326 ~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 404 (523)
.+++|+.|+|++ |.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..++ |+.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence 345566666664 666655555666666666666666666665565666666666666666666655555555444 666
Q ss_pred EECCCCcCcc
Q 009858 405 LNLSRNKLEG 414 (523)
Q Consensus 405 L~Ls~N~l~~ 414 (523)
|+|.+|++.+
T Consensus 108 l~l~~N~~~c 117 (347)
T 2ifg_A 108 LVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCCC
T ss_pred EEeeCCCccC
Confidence 6666666654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=4.2e-11 Score=116.80 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=56.0
Q ss_pred EEccCC-cCCCcCchhhhCCCCcCEEEccC-CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858 119 FLISNN-KFIGEIPRLICNTSTIEILDLSN-NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196 (523)
Q Consensus 119 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (523)
++++++ +++ .+|. |..+++|++|+|++ |.+++..+..|..+. +|++|+|++|++++..|..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 554 3444 55556666666664 566543334455554 566666666666655555555666666666666
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCcCC
Q 009858 197 NELVGSVPRSLLNCANLQVLDLGNNKMK 224 (523)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (523)
|++++..+..+..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666544444444443 666666655554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.12 E-value=3.9e-10 Score=111.87 Aligned_cols=288 Identities=13% Similarity=0.079 Sum_probs=150.7
Q ss_pred CCcccCCCCCCCCCccEEEccCCCCccCCCC---CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh
Q 009858 81 GPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC 157 (523)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 157 (523)
+..+-..+|..+++|+.+++..+ ++..... .+.+|+.+.+..+ +......+|.++..+.......... .-..+
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~--i~~~a 157 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTV--IGDEA 157 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCE--ECTTT
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccc--cchhh
Confidence 44555678889999999999755 3322222 2566666555433 2223334444443332222221111 11233
Q ss_pred HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCC-------------
Q 009858 158 IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMK------------- 224 (523)
Q Consensus 158 l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------- 224 (523)
|..+. +|+.+.+..+. ..+....|.++.+|+.+.+..+ +......+|.++..|+.+.+..+...
T Consensus 158 F~~c~-~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 158 FATCE-SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTCT-TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hcccC-CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 44443 56666655432 2244445555555555555443 33233344555555555544433211
Q ss_pred --------CCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccc
Q 009858 225 --------DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296 (523)
Q Consensus 225 --------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~ 296 (523)
......+..+..|+.+.+..+... .....+ .....++.+....+ .++...|..+..|+.+.+...
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F--~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLF--YNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTT--TTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT
T ss_pred EEECCCceecccccccccccceeEEcCCCcce-eecccc--ccccccceeccCce----eeccccccccccccccccccc
Confidence 111123334444444444333211 111111 23334444443332 123334444444444443211
Q ss_pred cccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCC
Q 009858 297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT 376 (523)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 376 (523)
+.......|..+.+|+.++|..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.+++
T Consensus 308 -------------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 308 -------------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp -------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred -------------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 11122234556788999999754 66455678999999999999877 7767778999999
Q ss_pred CCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858 377 DLESLDLSSNVLDGVIPRELTRLTFLAVL 405 (523)
Q Consensus 377 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 405 (523)
+|+.+++..+ +. .+..+|.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999765 33 334678888888764
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=4.9e-08 Score=96.71 Aligned_cols=296 Identities=9% Similarity=0.097 Sum_probs=162.6
Q ss_pred CCCCCCCC-CccEEEccCCCCccCCCC---CCCCCcEEEccCCc---CCCcCchhhhCCCCcCEEEccCCcCCccChhhH
Q 009858 86 GNKKLPWK-NLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNK---FIGEIPRLICNTSTIEILDLSNNSLSGTIPECI 158 (523)
Q Consensus 86 ~~~~~~~~-~L~~L~L~~n~l~~~~~~---~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 158 (523)
..+|..++ .|+.+.+..+ ++.+-.. .+.+|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++..-...+
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44565554 4777777543 3332222 26677777776553 44444566777777776666543 331223334
Q ss_pred hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCC
Q 009858 159 GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ 238 (523)
Q Consensus 159 ~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 238 (523)
..+. +|+.+.+..+ +..+....|.....|+.+.+..+ +...-..+|.+ .+|+.+.+..+-.. ....++..+.++.
T Consensus 134 ~~c~-~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCE-ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhc-ccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 4444 6777777644 33355556777777777777654 33333444543 45777766544321 3334555666666
Q ss_pred eEEeccccccCcCCCcccc-----------ccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccc
Q 009858 239 VLILRSNKFYGHLRDYEAD-----------YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307 (523)
Q Consensus 239 ~L~l~~n~l~~~~~~~~~~-----------~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 307 (523)
................+.. .....+..+.+... ++ .+....|.++..|+.+.+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~--------- 277 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVV--------- 277 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCC---------
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccc---------
Confidence 6655443322111100000 00112222222211 11 23334455555555554432110
Q ss_pred cccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCc
Q 009858 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387 (523)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 387 (523)
......+..++.|+.+.+. +.++......|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+
T Consensus 278 ----------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s- 344 (394)
T 4gt6_A 278 ----------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS- 344 (394)
T ss_dssp ----------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-
T ss_pred ----------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-
Confidence 0111223346677777775 3455344567888888999988754 55566678888899999988755
Q ss_pred CCCcCChhhcCCCCCCeEECCCCcC
Q 009858 388 LDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
++.+-..+|.++++|+.+++.++..
T Consensus 345 v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 345 VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCEEhHhHhhCCCCCCEEEECCcee
Confidence 6656667888899999998887754
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=8.9e-10 Score=107.04 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=30.0
Q ss_pred cccCCeeeCcCCccccc----CCccccCCCCCCEEeCCCCcCCCcCChhhcC-CCCCCeEECCCCc
Q 009858 351 LHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNVLDGVIPRELTR-LTFLAVLNLSRNK 411 (523)
Q Consensus 351 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~N~ 411 (523)
+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.+++.....+.. + ...++++++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 44555555555555442 2222334566666666666665443333332 2 3456666655
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=3.5e-10 Score=109.89 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=18.0
Q ss_pred CCcCEEEccCCcCCc-c-------ChhhHhhcccCCcEEEccCC
Q 009858 138 STIEILDLSNNSLSG-T-------IPECIGNFSKSLRVLDLRKN 173 (523)
Q Consensus 138 ~~L~~L~L~~n~l~~-~-------~p~~l~~l~~~L~~L~L~~n 173 (523)
..++.|.+......+ . +..++..++ +|+.|.+...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~-~L~~L~l~~~ 149 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFA-HFEGLFWGDI 149 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHT-TCSEEEECCC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcc-hhhheeecCc
Confidence 345666666554331 1 123344454 6777776543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.84 E-value=5.5e-08 Score=96.34 Aligned_cols=296 Identities=11% Similarity=0.106 Sum_probs=177.9
Q ss_pred CCcccCCCCCCCCCccEEEccCCC---CccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccC
Q 009858 81 GPKLLGNKKLPWKNLEYLDLRSNL---LQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTI 154 (523)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 154 (523)
+..+-..+|..+.+|+.+.+..+. ++...... +.+|+.+.+..+ ++.....+|..+.+|+.+.+..+- ...-
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~ 152 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVA 152 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEEC
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeec
Confidence 444556789999999999998764 43332222 677887776654 444566788899999999997543 3133
Q ss_pred hhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhh---
Q 009858 155 PECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWL--- 231 (523)
Q Consensus 155 p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l--- 231 (523)
...+.... .|+.+.+..+ ++.+....|.. ..|+.+.+..+-. .....+|.++.++.......+.... ....+
T Consensus 153 ~~~F~~c~-~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~ 227 (394)
T 4gt6_A 153 DGMFSYCY-SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA-IDNVLYEK 227 (394)
T ss_dssp TTTTTTCT-TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEE
T ss_pred ccceeccc-ccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceeccccccccc-ccceeecc
Confidence 34444555 7999999765 44455556654 5788888876533 3555677788888877765543321 11110
Q ss_pred -----------hcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccc
Q 009858 232 -----------GTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS 300 (523)
Q Consensus 232 -----------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~ 300 (523)
.....+..+.+... +.......+ ..+..|+.+.+.++.. .++...|.++..|+.+.+....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF--~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~~i--- 299 (394)
T 4gt6_A 228 SANGDYALIRYPSQREDPAFKIPNG-VARIETHAF--DSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSSRI--- 299 (394)
T ss_dssp CTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTT--TTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTC---
T ss_pred cccccccccccccccccceEEcCCc-ceEccccee--eecccccEEecccccc--eecCcccccccccccccCCCcc---
Confidence 01112223322211 111111222 4566777777765432 4555667777777766553210
Q ss_pred cccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCE
Q 009858 301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLES 380 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 380 (523)
.......|..+.+|+.++|..+ ++.....+|.++.+|+.+.|..+ ++.....+|.++++|+.
T Consensus 300 ----------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 300 ----------------TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp ----------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred ----------------cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 1111223445778888888754 55445678999999999999755 66566689999999999
Q ss_pred EeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858 381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412 (523)
Q Consensus 381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 412 (523)
+++.++.... ..+.....|+.+.+..|.+
T Consensus 362 i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 362 IEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEESSCHHHH---HTCBCCCCC----------
T ss_pred EEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 9999986542 4677788899888876654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.67 E-value=1.3e-06 Score=85.85 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=59.1
Q ss_pred hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN 406 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 406 (523)
+..|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 455555655433 44344456788888999988888887666778888889999998765 6656667888888888887
Q ss_pred CCCC
Q 009858 407 LSRN 410 (523)
Q Consensus 407 Ls~N 410 (523)
+..+
T Consensus 340 ip~~ 343 (379)
T 4h09_A 340 YPKS 343 (379)
T ss_dssp CCTT
T ss_pred ECCc
Confidence 7543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=4e-08 Score=86.05 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=10.4
Q ss_pred hhhCCCCcCEEEccCC-cCC
Q 009858 133 LICNTSTIEILDLSNN-SLS 151 (523)
Q Consensus 133 ~~~~l~~L~~L~L~~n-~l~ 151 (523)
.+...+.|++|+|++| .+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCC
T ss_pred HHhcCCCCCEEEecCCCCCC
Confidence 3444555666666655 554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=6.4e-08 Score=84.73 Aligned_cols=92 Identities=12% Similarity=0.214 Sum_probs=47.1
Q ss_pred chhhhCCCCcCEEEccCCcCCccC----hhhHhhcccCCcEEEccCCccccc----CCCCCCCCCCCCEEEC--cCCCCC
Q 009858 131 PRLICNTSTIEILDLSNNSLSGTI----PECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNF--NGNELV 200 (523)
Q Consensus 131 ~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~ 200 (523)
...+...++|++|+|++|.+...- ...+.... +|++|+|++|.+.+. +...+...++|++|+| ++|.+.
T Consensus 58 ~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 58 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 345566778888888888876432 22333333 567777766666532 2223333445555555 445554
Q ss_pred CC----CCccccCCCCCcEEECCCCcC
Q 009858 201 GS----VPRSLLNCANLQVLDLGNNKM 223 (523)
Q Consensus 201 ~~----~~~~l~~l~~L~~L~L~~n~l 223 (523)
.. +...+...++|++|++++|.+
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 22 112223334455555554443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=2e-07 Score=85.72 Aligned_cols=88 Identities=28% Similarity=0.306 Sum_probs=59.9
Q ss_pred ccccc--ccCCCCccCcCcc----hhhcCcccCCeeeCcCCcccc--cCCccccCCCCCCEEeCCCCcCCCcCChhhcCC
Q 009858 328 TIFTT--IDLSKNSFHGEIP----ELMGKLHSLRLLNLSQNILSG--NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL 399 (523)
Q Consensus 328 ~~L~~--L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 399 (523)
+.|.. ++++.|... .++ .....+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+
T Consensus 141 p~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp HHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred cchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 44444 566666433 222 222457788888888888886 4456667788888888888888865 333434
Q ss_pred C--CCCeEECCCCcCcccCCC
Q 009858 400 T--FLAVLNLSRNKLEGRIPE 418 (523)
Q Consensus 400 ~--~L~~L~Ls~N~l~~~~p~ 418 (523)
. .|++|+|++|++.+.+|.
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSS
T ss_pred ccCCcceEEccCCcCccccCc
Confidence 4 788888888888876663
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=4.6e-07 Score=83.36 Aligned_cols=80 Identities=26% Similarity=0.349 Sum_probs=65.7
Q ss_pred HhhcccccccCCCCccCc--CcchhhcCcccCCeeeCcCCcccccCCccccCCC--CCCEEeCCCCcCCCcCC-------
Q 009858 325 KILTIFTTIDLSKNSFHG--EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT--DLESLDLSSNVLDGVIP------- 393 (523)
Q Consensus 325 ~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~~------- 393 (523)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999997 4457778899999999999999964 2344444 99999999999987665
Q ss_pred hhhcCCCCCCeEE
Q 009858 394 RELTRLTFLAVLN 406 (523)
Q Consensus 394 ~~l~~l~~L~~L~ 406 (523)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2467889999887
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=3.6e-05 Score=75.45 Aligned_cols=287 Identities=11% Similarity=0.056 Sum_probs=181.4
Q ss_pred CCcccCCCCCCCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhH
Q 009858 81 GPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECI 158 (523)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 158 (523)
+..+-..+|..+.+|+.+++..+ ++.+.... -.+|+.+.+..+ ++.....+|... +|+.+.+..+ ++ .+....
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~-~i~~~~ 131 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TT-EIGNYI 131 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccC-CcccccCCCc-cc-cccccc
Confidence 34455678999999999999754 44333333 236777777644 444455567654 8999999765 33 344443
Q ss_pred hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCC------------CCCccccCCCCCcEEECCCCcCCCC
Q 009858 159 GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG------------SVPRSLLNCANLQVLDLGNNKMKDT 226 (523)
Q Consensus 159 ~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (523)
+... +|+...+..+ ++.+....|....+++.+.+..+.... .....+.....+..+.+..... ..
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 208 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TV 208 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EE
T ss_pred cccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EE
Confidence 4444 5777777654 444566678888888888776543321 1122344455566665554332 23
Q ss_pred chHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcc
Q 009858 227 FPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306 (523)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 306 (523)
....+....+|+.+.+..+ +.......+ ..+..|+.+.+..+ ++ .++...|.++..++.+.+....
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f--~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~i--------- 274 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAF--YGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAKV--------- 274 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTT--TTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCCC---------
T ss_pred eecccccccccceeeeccc-eeEEccccc--cCCccceEEEcCCC-cc-EeCccccceeehhccccccccc---------
Confidence 3445666777777777554 222222222 55677888877655 33 5566667777777666543211
Q ss_pred ccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCC
Q 009858 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386 (523)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 386 (523)
.......+..+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+
T Consensus 275 ----------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 275 ----------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ----------SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ----------eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 1111233455788999999988888566788999999999999755 66566779999999999999765
Q ss_pred cCCCcCChhhcCCCC
Q 009858 387 VLDGVIPRELTRLTF 401 (523)
Q Consensus 387 ~l~~~~~~~l~~l~~ 401 (523)
++.+-..+|.+++.
T Consensus 344 -v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 344 -ITLIESGAFEGSSI 357 (379)
T ss_dssp -CCEECTTTTTTSSC
T ss_pred -cCEEchhHhhCCCC
Confidence 66555667776643
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=3.5e-07 Score=78.02 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=68.6
Q ss_pred cccccccCCCCccCcCcchhhcCcccCCeeeCcCCc-ccccCCccccCC----CCCCEEeCCCCc-CCCcCChhhcCCCC
Q 009858 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI-LSGNIPSSLGDL----TDLESLDLSSNV-LDGVIPRELTRLTF 401 (523)
Q Consensus 328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 401 (523)
..|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999887666677899999999999995 776544455554 479999999985 77655566788999
Q ss_pred CCeEECCCCc
Q 009858 402 LAVLNLSRNK 411 (523)
Q Consensus 402 L~~L~Ls~N~ 411 (523)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.3e-06 Score=74.52 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=46.7
Q ss_pred CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc-CCccChhhHhhc---ccCCcEEEccCCc-ccccCCCCCCCCCCC
Q 009858 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS-LSGTIPECIGNF---SKSLRVLDLRKNR-FHGTIPETFPKGNNL 189 (523)
Q Consensus 115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l---~~~L~~L~L~~n~-l~~~~p~~~~~l~~L 189 (523)
.|+.||++++.++..--..+.++++|+.|+|++|. +++.--..+..+ .++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34455555555444444456778888888888874 664444444442 1257777777763 554322234445556
Q ss_pred CEEECcCC
Q 009858 190 TTLNFNGN 197 (523)
Q Consensus 190 ~~L~L~~n 197 (523)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66666555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00074 Score=54.67 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=41.5
Q ss_pred eeeCcCCccc-ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858 356 LLNLSQNILS-GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414 (523)
Q Consensus 356 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 414 (523)
.++-+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 24554332 468888888888887777778888888888888888864
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=0.00016 Score=62.85 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred hCCCCcCEEEccCC-cCCcc----ChhhHhhcccCCcEEEccCCcccccCCCCCC----CCCCCCEEECcCCCCCCC---
Q 009858 135 CNTSTIEILDLSNN-SLSGT----IPECIGNFSKSLRVLDLRKNRFHGTIPETFP----KGNNLTTLNFNGNELVGS--- 202 (523)
Q Consensus 135 ~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~--- 202 (523)
.+-+.|+.|+|++| .|... +-+.+..-. .|++|+|++|.+.+.....++ .-+.|++|+|+.|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 33455555555553 44321 122222222 455555555555433222221 123455555555554421
Q ss_pred -CCccccCCCCCcEEECCCC
Q 009858 203 -VPRSLLNCANLQVLDLGNN 221 (523)
Q Consensus 203 -~~~~l~~l~~L~~L~L~~n 221 (523)
+...+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 1122333344555555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=0.00017 Score=62.65 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=60.2
Q ss_pred hcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCccccc----CCccccCCCCCCEEeCCCCc---CCCc----
Q 009858 327 LTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNV---LDGV---- 391 (523)
Q Consensus 327 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~---- 391 (523)
-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|.+. +-.++..-+.|++|+|++|. +...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 46788899999988743 334445567899999999988753 22345555779999998763 3321
Q ss_pred CChhhcCCCCCCeEECCCCcCc
Q 009858 392 IPRELTRLTFLAVLNLSRNKLE 413 (523)
Q Consensus 392 ~~~~l~~l~~L~~L~Ls~N~l~ 413 (523)
+...+..-+.|+.|+++.|...
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhCCCcCeEeccCCCcc
Confidence 3345666788999999877653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.0017 Score=52.44 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=45.1
Q ss_pred cEEEccCCCCc--cCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCC
Q 009858 96 EYLDLRSNLLQ--GPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151 (523)
Q Consensus 96 ~~L~L~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 151 (523)
..++.+++.++ ..+....++|+.|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 444344668999999999998777788888999999999998875
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=91.47 E-value=0.026 Score=34.96 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=7.7
Q ss_pred EeeeehhhhhHHHHHHHH
Q 009858 472 VLMGYVCGTVFGMILGYI 489 (523)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~ 489 (523)
++.|++.|+++.++++++
T Consensus 13 IA~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALG 30 (44)
T ss_dssp STHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHH
Confidence 344555444443333333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.25 E-value=0.064 Score=33.15 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=6.8
Q ss_pred EeeeehhhhhHHHHHH
Q 009858 472 VLMGYVCGTVFGMILG 487 (523)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (523)
++.|++.|+++.++++
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 3444444444433333
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=80.10 E-value=0.12 Score=53.05 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=29.9
Q ss_pred ccccccchhhHhhhhhhhhcccchhhHHHHhhhhhHHHH
Q 009858 3 KRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVY 41 (523)
Q Consensus 3 ~~~~eLi~r~~~q~~~~~~~~~~~~~~hdl~~~l~~~~~ 41 (523)
++|++|+.|||+|....+ ....|+ |||+|+++|..++
T Consensus 432 ~~l~~L~~rsLl~~~~~~-~~~~~~-mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 432 DRLKRLSKRGALLSGKRM-PVLTFK-IDHIIHMFLKHVV 468 (549)
T ss_dssp HHHHHTTTBSSCSEEECS-SSCEEE-CCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCeeEecCC-CceEEE-eChHHHHHHHHHH
Confidence 479999999999986543 345677 9999999998766
No 168
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.53 E-value=0.36 Score=34.45 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=10.3
Q ss_pred eeeeeeccccceeEeeeehhh
Q 009858 498 WIMGIVDGKNHRKVRRQNKKL 518 (523)
Q Consensus 498 w~~~~~~~~~~~~~~~~~~~~ 518 (523)
|+..+.|++--+++.+.|.+.
T Consensus 34 ~~~~i~DrrE~~kFEkE~~~~ 54 (79)
T 2knc_B 34 LLITIHDRKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444444555555555544443
No 169
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=51.07 E-value=3.3 Score=24.53 Aligned_cols=12 Identities=25% Similarity=0.482 Sum_probs=6.8
Q ss_pred EeeeehhhhccC
Q 009858 511 VRRQNKKLEGRR 522 (523)
Q Consensus 511 ~~~~~~~~~~~~ 522 (523)
++.++||+|+++
T Consensus 21 iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 21 LRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhHHHHHHHHH
Confidence 455566665554
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=47.31 E-value=2.9 Score=24.93 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=5.8
Q ss_pred eeehhhhhHHHH
Q 009858 474 MGYVCGTVFGMI 485 (523)
Q Consensus 474 ~~~~~~~~~~~~ 485 (523)
+|++.+++++++
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 455555554443
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.48 E-value=31 Score=25.60 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=29.3
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858 363 ILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409 (523)
Q Consensus 363 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 409 (523)
.++.+-..+|.++.+|+.+.|-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444566777777777777665 3435556777777777777654
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.97 E-value=70 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858 179 IPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG 219 (523)
Q Consensus 179 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (523)
....|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344444555555544432 222333444444555444443
No 173
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=22.39 E-value=25 Score=21.03 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.6
Q ss_pred eeehhhhhH
Q 009858 474 MGYVCGTVF 482 (523)
Q Consensus 474 ~~~~~~~~~ 482 (523)
.+++.|+++
T Consensus 17 ~~vv~Gv~l 25 (41)
T 2k9y_A 17 GGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 334444443
No 174
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.94 E-value=30 Score=21.04 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=12.8
Q ss_pred eEEeeeehhhhhHHHHHHHHHhh
Q 009858 470 KVVLMGYVCGTVFGMILGYILLS 492 (523)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
-+++.++++|+++.+++.++++.
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665556554
Done!