Query 009859
Match_columns 523
No_of_seqs 312 out of 2301
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 18:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09130 NADH dehydrogenase su 100.0 4E-114 8E-119 940.0 48.9 520 1-522 152-680 (687)
2 KOG2282 NADH-ubiquinone oxidor 100.0 9E-106 2E-110 787.0 26.3 522 1-523 182-708 (708)
3 COG3383 Uncharacterized anaero 100.0 3E-101 6E-106 787.5 29.4 471 1-473 156-776 (978)
4 TIGR01973 NuoG NADH-quinone ox 100.0 2E-92 4.3E-97 767.7 37.3 436 1-438 149-603 (603)
5 PRK09129 NADH dehydrogenase su 100.0 2.8E-91 6E-96 779.8 43.1 500 1-517 151-703 (776)
6 PRK07860 NADH dehydrogenase su 100.0 8.7E-92 1.9E-96 779.9 37.9 498 1-516 157-714 (797)
7 PRK08166 NADH dehydrogenase su 100.0 8.2E-87 1.8E-91 748.7 36.6 454 1-466 156-684 (847)
8 COG1034 NuoG NADH dehydrogenas 100.0 4.4E-77 9.5E-82 631.2 22.4 516 1-520 151-681 (693)
9 cd02773 MopB_Res-Cmplx1_Nad11 100.0 5.1E-74 1.1E-78 591.7 38.6 373 69-442 1-375 (375)
10 cd02774 MopB_Res-Cmplx1_Nad11- 100.0 1.6E-71 3.5E-76 563.1 36.4 361 69-440 1-364 (366)
11 cd02752 MopB_Formate-Dh-Na-lik 100.0 1.1E-69 2.4E-74 583.5 32.5 384 69-461 1-478 (649)
12 cd02754 MopB_Nitrate-R-NapA-li 100.0 1.1E-68 2.5E-73 580.8 37.8 402 69-473 1-524 (565)
13 cd02753 MopB_Formate-Dh-H Form 100.0 2.8E-68 6.1E-73 571.4 35.2 400 69-473 1-472 (512)
14 TIGR03479 DMSO_red_II_alp DMSO 100.0 2.1E-67 4.6E-72 593.8 35.5 399 41-443 25-643 (912)
15 TIGR01553 formate-DH-alph form 100.0 4.2E-67 9.1E-72 587.3 33.2 395 64-461 41-695 (1009)
16 TIGR01591 Fdh-alpha formate de 100.0 1.9E-66 4.1E-71 574.7 36.5 393 70-465 1-501 (671)
17 cd02766 MopB_3 The MopB_3 CD i 100.0 9.7E-67 2.1E-71 555.2 32.0 368 69-462 1-447 (501)
18 cd02771 MopB_NDH-1_NuoG2-N7 Mo 100.0 6.9E-66 1.5E-70 547.5 33.5 389 69-466 1-456 (472)
19 cd02768 MopB_NADH-Q-OR-NuoG2 M 100.0 1.2E-65 2.6E-70 532.6 32.9 366 69-442 1-386 (386)
20 cd02750 MopB_Nitrate-R-NarG-li 100.0 1.1E-65 2.3E-70 542.6 32.5 375 67-465 4-459 (461)
21 cd02772 MopB_NDH-1_NuoG2 MopB_ 100.0 2.3E-64 5E-69 527.3 33.6 364 69-442 1-414 (414)
22 cd02759 MopB_Acetylene-hydrata 100.0 1.8E-64 4E-69 536.1 30.5 353 69-445 1-429 (477)
23 cd02762 MopB_1 The MopB_1 CD i 100.0 7.7E-64 1.7E-68 538.7 29.6 369 69-442 1-476 (539)
24 cd02755 MopB_Thiosulfate-R-lik 100.0 1E-63 2.2E-68 526.9 29.8 354 68-444 1-430 (454)
25 TIGR01706 NAPA periplasmic nit 100.0 2.4E-63 5.1E-68 557.2 33.9 383 65-448 40-577 (830)
26 PRK13532 nitrate reductase cat 100.0 3.5E-63 7.7E-68 556.9 34.4 384 64-448 39-577 (830)
27 cd02763 MopB_2 The MopB_2 CD i 100.0 3.4E-62 7.3E-67 528.0 31.8 388 69-462 1-554 (679)
28 cd02770 MopB_DmsA-EC This CD ( 100.0 1.3E-61 2.8E-66 528.7 29.6 404 69-476 1-553 (617)
29 cd02764 MopB_PHLH The MopB_PHL 100.0 8.7E-62 1.9E-66 520.7 26.3 390 46-446 22-483 (524)
30 cd00368 Molybdopterin-Binding 100.0 7.9E-61 1.7E-65 494.7 31.8 340 69-442 1-374 (374)
31 PRK15488 thiosulfate reductase 100.0 6E-61 1.3E-65 536.0 33.2 386 65-454 41-541 (759)
32 cd02765 MopB_4 The MopB_4 CD i 100.0 5.8E-61 1.3E-65 517.8 30.5 378 69-475 1-520 (567)
33 cd02757 MopB_Arsenate-R This C 100.0 1.6E-60 3.5E-65 509.2 29.6 357 67-445 1-459 (523)
34 cd02751 MopB_DMSOR-like The Mo 100.0 1.3E-59 2.8E-64 512.7 28.4 394 75-475 3-548 (609)
35 cd02756 MopB_Arsenite-Ox Arsen 100.0 6.6E-59 1.4E-63 501.4 33.2 394 61-458 6-596 (676)
36 cd02758 MopB_Tetrathionate-Ra 100.0 5.1E-59 1.1E-63 511.0 31.2 390 69-460 1-630 (735)
37 TIGR02166 dmsA_ynfE anaerobic 100.0 8.1E-59 1.8E-63 522.1 31.7 408 64-473 41-598 (797)
38 PRK08493 NADH dehydrogenase su 100.0 3.3E-59 7.1E-64 508.8 25.6 388 1-447 148-655 (819)
39 cd02760 MopB_Phenylacetyl-CoA- 100.0 2.6E-58 5.6E-63 506.4 30.2 376 69-446 1-622 (760)
40 PRK14990 anaerobic dimethyl su 100.0 3.3E-58 7.1E-63 517.1 31.1 407 65-473 56-615 (814)
41 cd02769 MopB_DMSOR-BSOR-TMAOR 100.0 2.1E-55 4.5E-60 478.4 27.2 377 74-459 2-524 (609)
42 COG0243 BisC Anaerobic dehydro 100.0 2.4E-55 5.3E-60 490.8 23.8 373 68-445 41-532 (765)
43 TIGR02693 arsenite_ox_L arseni 100.0 6.6E-54 1.4E-58 476.2 31.2 394 61-459 5-605 (806)
44 TIGR03129 one_C_dehyd_B formyl 100.0 1E-53 2.2E-58 448.5 30.9 353 70-442 2-421 (421)
45 PRK09939 putative oxidoreducta 100.0 7.9E-53 1.7E-57 460.2 31.4 360 106-469 92-595 (759)
46 TIGR01701 Fdhalpha-like oxidor 100.0 1.6E-52 3.4E-57 462.1 31.7 361 106-469 83-581 (743)
47 PRK14991 tetrathionate reducta 100.0 2.2E-52 4.9E-57 471.8 32.6 380 64-445 71-741 (1031)
48 cd02761 MopB_FmdB-FwdB The Mop 100.0 5.6E-52 1.2E-56 434.4 30.2 348 70-442 2-415 (415)
49 TIGR00509 bisC_fam molybdopter 100.0 4.5E-52 9.7E-57 464.5 28.5 359 79-448 5-517 (770)
50 TIGR02164 torA trimethylamine- 100.0 7.3E-52 1.6E-56 464.9 28.1 393 46-448 19-568 (822)
51 cd02767 MopB_ydeP The MopB_yde 100.0 2.7E-51 5.9E-56 438.5 27.8 330 112-443 54-530 (574)
52 PRK15102 trimethylamine N-oxid 100.0 5.1E-50 1.1E-54 450.2 27.2 363 79-448 51-571 (825)
53 TIGR01580 narG respiratory nit 100.0 7.1E-49 1.5E-53 432.6 34.8 376 66-443 43-834 (1235)
54 PF00384 Molybdopterin: Molybd 100.0 6.1E-50 1.3E-54 421.4 18.2 321 121-441 1-432 (432)
55 COG1029 FwdB Formylmethanofura 100.0 2.6E-39 5.6E-44 307.7 26.6 353 67-443 3-426 (429)
56 COG5013 NarG Nitrate reductase 100.0 2.5E-28 5.4E-33 254.5 25.5 190 66-257 45-289 (1227)
57 PF04879 Molybdop_Fe4S4: Molyb 99.5 1.7E-14 3.8E-19 105.3 5.4 54 65-118 1-54 (55)
58 PTZ00305 NADH:ubiquinone oxido 99.4 3E-14 6.5E-19 135.8 2.1 58 1-59 219-278 (297)
59 PF09326 DUF1982: Domain of un 98.7 1E-08 2.3E-13 71.7 1.9 31 486-516 19-49 (49)
60 PRK07569 bidirectional hydroge 98.1 6.1E-07 1.3E-11 86.2 0.8 56 1-56 153-212 (234)
61 PRK05113 electron transport co 97.3 4.6E-05 9.9E-10 70.5 0.0 54 1-64 121-174 (191)
62 PF12798 Fer4_3: 4Fe-4S bindin 96.8 0.00025 5.4E-09 36.6 -0.2 15 36-50 1-15 (15)
63 COG1029 FwdB Formylmethanofura 96.5 0.017 3.7E-07 57.0 9.6 113 277-397 69-199 (429)
64 TIGR02512 Fe_only_hydrog hydro 96.1 0.0017 3.6E-08 67.0 0.6 55 1-55 14-71 (374)
65 COG1143 NuoI Formate hydrogenl 95.9 0.0022 4.7E-08 57.9 0.3 23 33-55 94-116 (172)
66 COG3862 Uncharacterized protei 95.9 0.011 2.4E-07 47.3 3.9 54 68-133 3-58 (117)
67 PF00037 Fer4: 4Fe-4S binding 95.5 0.0034 7.5E-08 36.9 -0.2 18 35-52 7-24 (24)
68 PF12838 Fer4_7: 4Fe-4S diclus 95.0 0.0026 5.6E-08 45.5 -2.0 16 35-50 37-52 (52)
69 PF13187 Fer4_9: 4Fe-4S diclus 95.0 0.0037 8E-08 45.1 -1.3 40 12-51 14-55 (55)
70 PLN00071 photosystem I subunit 94.6 0.012 2.6E-07 46.3 0.6 21 36-56 48-68 (81)
71 COG2221 DsrA Dissimilatory sul 94.6 0.044 9.5E-07 53.7 4.4 103 13-153 157-264 (317)
72 TIGR00403 ndhI NADH-plastoquin 94.4 0.016 3.5E-07 53.3 1.2 17 35-51 63-79 (183)
73 TIGR00315 cdhB CO dehydrogenas 94.3 1.1 2.4E-05 40.2 12.5 117 137-263 15-145 (162)
74 TIGR00402 napF ferredoxin-type 94.3 0.022 4.7E-07 47.0 1.4 18 36-53 68-85 (101)
75 TIGR03048 PS_I_psaC photosyste 94.1 0.016 3.4E-07 45.6 0.3 23 35-57 46-68 (80)
76 PRK05888 NADH dehydrogenase su 94.1 0.023 5E-07 51.3 1.4 21 33-53 57-77 (164)
77 PRK06991 ferredoxin; Provision 93.9 0.011 2.4E-07 57.6 -1.2 44 35-81 86-129 (270)
78 PRK00945 acetyl-CoA decarbonyl 93.8 1.7 3.7E-05 39.3 12.7 123 136-268 21-158 (171)
79 PRK10194 ferredoxin-type prote 93.7 0.022 4.7E-07 51.5 0.5 43 35-81 67-118 (163)
80 PF12837 Fer4_6: 4Fe-4S bindin 93.3 0.019 4.2E-07 33.7 -0.4 16 36-51 9-24 (24)
81 PRK02651 photosystem I subunit 93.2 0.035 7.7E-07 43.6 0.9 19 36-54 48-66 (81)
82 PF14697 Fer4_21: 4Fe-4S diclu 93.2 0.052 1.1E-06 39.8 1.7 18 35-52 40-58 (59)
83 KOG3256 NADH:ubiquinone oxidor 92.9 0.047 1E-06 47.7 1.2 20 36-55 152-171 (212)
84 TIGR01971 NuoI NADH-quinone ox 92.8 0.051 1.1E-06 46.4 1.4 24 32-55 41-64 (122)
85 CHL00014 ndhI NADH dehydrogena 92.5 0.054 1.2E-06 49.1 1.1 18 35-52 60-77 (167)
86 PRK08348 NADH-plastoquinone ox 92.1 0.056 1.2E-06 46.1 0.7 46 35-82 43-88 (120)
87 PF13484 Fer4_16: 4Fe-4S doubl 92.1 0.039 8.5E-07 41.6 -0.3 19 36-54 2-20 (67)
88 PF12838 Fer4_7: 4Fe-4S diclus 91.8 0.036 7.8E-07 39.4 -0.7 41 36-76 2-42 (52)
89 TIGR02912 sulfite_red_C sulfit 91.6 0.062 1.3E-06 54.1 0.4 58 13-83 154-217 (314)
90 TIGR02176 pyruv_ox_red pyruvat 90.5 0.086 1.9E-06 62.0 0.3 26 32-57 737-764 (1165)
91 PRK09476 napG quinol dehydroge 90.2 0.11 2.4E-06 50.4 0.7 22 34-55 97-120 (254)
92 CHL00065 psaC photosystem I su 89.1 0.12 2.6E-06 40.6 0.1 23 35-57 47-69 (81)
93 TIGR00397 mauM_napG MauM/NapG 88.9 0.21 4.4E-06 47.2 1.5 19 35-53 92-112 (213)
94 TIGR02936 fdxN_nitrog ferredox 88.9 0.12 2.6E-06 41.6 -0.1 22 34-55 70-91 (91)
95 PRK09853 putative selenate red 88.7 0.13 2.9E-06 59.0 0.1 74 38-112 894-973 (1019)
96 TIGR03224 benzo_boxA benzoyl-C 88.6 0.13 2.9E-06 53.6 0.0 28 36-63 41-68 (411)
97 PRK08318 dihydropyrimidine deh 88.1 0.28 6.1E-06 51.5 2.0 20 36-55 379-399 (420)
98 PRK06273 ferredoxin; Provision 87.8 0.21 4.5E-06 45.0 0.8 27 33-59 90-116 (165)
99 PRK12387 formate hydrogenlyase 87.8 0.27 5.8E-06 45.2 1.4 18 36-53 40-57 (180)
100 PRK08222 hydrogenase 4 subunit 86.7 0.29 6.2E-06 45.0 1.0 48 35-82 39-88 (181)
101 PRK09626 oorD 2-oxoglutarate-a 86.0 0.36 7.9E-06 39.8 1.2 21 35-55 17-37 (103)
102 TIGR00315 cdhB CO dehydrogenas 86.0 4.4 9.5E-05 36.4 8.1 112 278-400 18-148 (162)
103 PRK13984 putative oxidoreducta 85.9 0.29 6.4E-06 54.0 0.8 20 35-54 87-106 (604)
104 PF13187 Fer4_9: 4Fe-4S diclus 85.1 0.2 4.3E-06 35.9 -0.7 23 37-59 3-25 (55)
105 PRK07418 acetolactate synthase 84.9 3.4 7.4E-05 45.7 8.5 108 140-254 211-325 (616)
106 PRK12769 putative oxidoreducta 84.7 0.41 8.8E-06 53.4 1.2 78 1-82 17-100 (654)
107 PRK08322 acetolactate synthase 84.6 3 6.4E-05 45.5 7.8 108 140-255 183-297 (547)
108 PRK09477 napH quinol dehydroge 84.4 0.3 6.6E-06 48.0 0.0 21 34-54 242-262 (271)
109 COG0028 IlvB Thiamine pyrophos 84.4 3.5 7.5E-05 44.9 8.1 106 141-254 188-300 (550)
110 TIGR03129 one_C_dehyd_B formyl 84.3 6.6 0.00014 41.0 10.1 47 355-401 137-200 (421)
111 cd02761 MopB_FmdB-FwdB The Mop 84.1 5.7 0.00012 41.4 9.5 46 355-400 131-193 (415)
112 TIGR02486 RDH reductive dehalo 83.4 0.83 1.8E-05 45.8 2.7 19 36-54 207-225 (314)
113 PRK06965 acetolactate synthase 83.4 4 8.7E-05 44.9 8.3 109 140-254 208-323 (587)
114 PRK00945 acetyl-CoA decarbonyl 83.2 7.5 0.00016 35.2 8.4 112 278-398 25-154 (171)
115 TIGR01971 NuoI NADH-quinone ox 82.9 0.72 1.6E-05 39.2 1.7 23 34-56 82-104 (122)
116 TIGR03048 PS_I_psaC photosyste 82.8 0.46 1E-05 37.1 0.4 21 35-55 9-29 (80)
117 PRK09107 acetolactate synthase 82.8 4 8.6E-05 45.0 7.9 110 139-255 198-316 (595)
118 PRK02651 photosystem I subunit 82.3 0.61 1.3E-05 36.4 1.0 21 35-55 10-30 (81)
119 COG1145 NapF Ferredoxin [Energ 82.0 0.56 1.2E-05 37.9 0.7 18 36-53 31-48 (99)
120 PRK09624 porD pyuvate ferredox 81.8 0.51 1.1E-05 39.1 0.4 21 35-55 82-102 (105)
121 cd02752 MopB_Formate-Dh-Na-lik 81.6 5.3 0.00012 44.3 8.3 48 353-400 167-224 (649)
122 COG1146 Ferredoxin [Energy pro 81.6 0.9 1.9E-05 34.2 1.6 15 38-52 45-59 (68)
123 PRK07979 acetolactate synthase 81.4 5.6 0.00012 43.6 8.4 110 139-255 192-308 (574)
124 PRK08764 ferredoxin; Provision 81.4 0.56 1.2E-05 40.8 0.5 18 35-52 116-133 (135)
125 TIGR01944 rnfB electron transp 81.1 0.47 1E-05 42.9 -0.1 19 36-54 145-163 (165)
126 PRK09623 vorD 2-ketoisovalerat 80.9 0.54 1.2E-05 38.9 0.2 21 35-55 82-102 (105)
127 TIGR00276 iron-sulfur cluster 80.8 0.31 6.7E-06 48.1 -1.5 18 36-53 161-178 (282)
128 PRK06048 acetolactate synthase 80.6 6.4 0.00014 43.1 8.5 109 139-254 193-308 (561)
129 CHL00099 ilvB acetohydroxyacid 80.6 6.9 0.00015 43.0 8.8 108 140-254 204-318 (585)
130 PLN02470 acetolactate synthase 80.6 6.7 0.00014 43.2 8.7 108 139-254 201-314 (585)
131 TIGR02179 PorD_KorD 2-oxoacid: 79.8 0.69 1.5E-05 35.8 0.5 19 35-53 56-74 (78)
132 TIGR00173 menD 2-succinyl-5-en 79.8 11 0.00025 39.6 9.8 107 140-255 198-309 (432)
133 PRK08222 hydrogenase 4 subunit 79.4 0.66 1.4E-05 42.6 0.3 21 35-55 74-94 (181)
134 cd01410 SIRT7 SIRT7: Eukaryoti 79.3 3.8 8.3E-05 38.4 5.4 47 209-258 150-196 (206)
135 PRK07118 ferredoxin; Validated 79.1 0.68 1.5E-05 45.6 0.3 51 1-55 175-234 (280)
136 PRK07282 acetolactate synthase 78.9 7.3 0.00016 42.6 8.3 108 140-254 197-311 (566)
137 PRK08273 thiamine pyrophosphat 78.0 5.8 0.00012 43.8 7.2 105 139-254 194-304 (597)
138 PF00205 TPP_enzyme_M: Thiamin 78.0 1.5 3.2E-05 38.1 2.1 108 143-256 1-115 (137)
139 PF12800 Fer4_4: 4Fe-4S bindin 78.0 1.2 2.6E-05 23.7 0.9 14 36-49 4-17 (17)
140 PRK08327 acetolactate synthase 77.6 9.4 0.0002 41.8 8.6 105 139-254 206-312 (569)
141 TIGR02418 acolac_catab acetola 77.3 7.7 0.00017 42.2 7.9 109 139-255 181-297 (539)
142 PRK08979 acetolactate synthase 77.3 7 0.00015 42.9 7.5 109 139-254 192-307 (572)
143 TIGR01973 NuoG NADH-quinone ox 77.1 5.3 0.00011 44.1 6.6 50 354-403 361-420 (603)
144 PRK08617 acetolactate synthase 77.0 9.1 0.0002 41.8 8.3 107 140-254 188-302 (552)
145 PRK08155 acetolactate synthase 76.9 10 0.00023 41.4 8.8 108 140-254 198-312 (564)
146 TIGR00273 iron-sulfur cluster- 76.6 0.72 1.6E-05 48.4 -0.4 22 33-54 342-363 (432)
147 PRK06991 ferredoxin; Provision 76.4 0.56 1.2E-05 45.8 -1.1 20 36-55 117-136 (270)
148 PLN00071 photosystem I subunit 76.4 0.86 1.9E-05 35.6 0.1 21 35-55 10-30 (81)
149 TIGR02176 pyruv_ox_red pyruvat 76.2 1.3 2.8E-05 52.4 1.6 20 35-54 684-703 (1165)
150 PRK08348 NADH-plastoquinone ox 76.2 1.1 2.4E-05 38.1 0.7 21 35-55 74-94 (120)
151 COG1149 MinD superfamily P-loo 76.1 1.6 3.6E-05 42.1 1.9 55 36-94 71-130 (284)
152 PRK09625 porD pyruvate flavodo 76.1 0.8 1.7E-05 39.7 -0.2 18 35-52 90-107 (133)
153 TIGR01504 glyox_carbo_lig glyo 75.9 13 0.00028 41.0 9.1 110 138-254 187-304 (588)
154 PRK09259 putative oxalyl-CoA d 75.8 5.9 0.00013 43.4 6.5 105 139-254 199-308 (569)
155 PRK08199 thiamine pyrophosphat 75.6 8.6 0.00019 42.0 7.7 111 140-254 191-308 (557)
156 TIGR02720 pyruv_oxi_spxB pyruv 75.5 7.1 0.00015 42.8 7.0 105 140-254 187-297 (575)
157 PRK06466 acetolactate synthase 75.2 9 0.00019 42.0 7.7 108 140-254 193-307 (574)
158 PRK06725 acetolactate synthase 75.1 12 0.00025 41.2 8.5 109 140-255 201-316 (570)
159 COG1737 RpiR Transcriptional r 75.1 17 0.00037 35.8 8.9 106 140-262 117-223 (281)
160 PRK08978 acetolactate synthase 75.0 9.9 0.00021 41.4 7.9 108 140-254 183-297 (548)
161 TIGR02494 PFLE_PFLC glycyl-rad 74.8 0.89 1.9E-05 45.2 -0.2 47 35-83 49-98 (295)
162 PF13237 Fer4_10: 4Fe-4S diclu 74.5 1.2 2.7E-05 31.3 0.5 13 36-48 9-21 (52)
163 PRK09626 oorD 2-oxoglutarate-a 74.4 1.1 2.4E-05 36.9 0.3 20 35-54 54-73 (103)
164 PRK06456 acetolactate synthase 74.4 9.2 0.0002 41.9 7.5 109 140-254 194-309 (572)
165 PRK08527 acetolactate synthase 74.2 9.8 0.00021 41.6 7.7 108 139-253 189-303 (563)
166 PRK06546 pyruvate dehydrogenas 74.1 8.7 0.00019 42.2 7.2 102 139-254 187-294 (578)
167 cd01413 SIR2_Af2 SIR2_Af2: Arc 74.0 5.2 0.00011 38.0 4.8 45 209-256 166-210 (222)
168 PRK07789 acetolactate synthase 73.0 13 0.00028 41.2 8.3 108 140-254 218-332 (612)
169 PRK10330 formate dehydrogenase 72.9 1.5 3.2E-05 40.2 0.8 30 34-64 129-164 (181)
170 PRK06882 acetolactate synthase 72.8 14 0.0003 40.5 8.5 108 140-254 193-307 (574)
171 PRK07710 acetolactate synthase 72.8 14 0.00031 40.4 8.5 108 140-254 202-316 (571)
172 COG2768 Uncharacterized Fe-S c 72.6 1.4 3E-05 43.0 0.5 20 35-54 194-213 (354)
173 PRK06273 ferredoxin; Provision 72.6 1.3 2.7E-05 40.0 0.2 20 35-54 50-69 (165)
174 TIGR02163 napH_ ferredoxin-typ 72.4 1.7 3.6E-05 42.3 1.0 15 40-54 172-186 (255)
175 PRK09898 hypothetical protein; 72.0 1.5 3.3E-05 41.2 0.6 20 35-54 155-174 (208)
176 PF00205 TPP_enzyme_M: Thiamin 72.0 3.3 7.2E-05 35.8 2.8 39 277-319 1-39 (137)
177 TIGR00118 acolac_lg acetolacta 71.8 11 0.00024 41.1 7.4 109 139-254 187-302 (558)
178 PRK11269 glyoxylate carboligas 71.1 18 0.0004 39.7 9.0 108 139-253 189-304 (591)
179 PRK06112 acetolactate synthase 70.3 10 0.00022 41.6 6.8 109 139-254 199-319 (578)
180 PTZ00409 Sir2 (Silent Informat 70.1 6.5 0.00014 38.6 4.5 44 210-256 195-238 (271)
181 cd01409 SIRT4 SIRT4: Eukaryoti 69.2 7.3 0.00016 38.0 4.7 47 209-258 199-245 (260)
182 COG1143 NuoI Formate hydrogenl 69.2 1.9 4.1E-05 39.1 0.6 48 36-83 57-111 (172)
183 PLN02573 pyruvate decarboxylas 68.9 12 0.00027 41.0 7.0 110 139-255 210-327 (578)
184 PF14697 Fer4_21: 4Fe-4S diclu 68.8 2.7 5.9E-05 30.7 1.3 20 36-55 8-27 (59)
185 PRK07118 ferredoxin; Validated 68.7 1.6 3.4E-05 43.1 -0.1 34 35-68 243-276 (280)
186 PRK07449 2-succinyl-5-enolpyru 68.5 22 0.00048 38.9 8.9 104 141-254 210-320 (568)
187 TIGR02494 PFLE_PFLC glycyl-rad 68.5 1.8 3.9E-05 43.0 0.3 14 136-149 105-118 (295)
188 PRK06457 pyruvate dehydrogenas 68.2 20 0.00044 39.0 8.4 102 140-254 182-289 (549)
189 PRK07524 hypothetical protein; 68.0 12 0.00026 40.6 6.6 110 139-254 187-300 (535)
190 PRK06154 hypothetical protein; 67.9 13 0.00029 40.6 7.0 107 139-254 200-313 (565)
191 CHL00065 psaC photosystem I su 67.9 2.2 4.7E-05 33.3 0.6 21 35-55 10-30 (81)
192 PRK05888 NADH dehydrogenase su 67.9 2.5 5.5E-05 38.0 1.1 23 33-55 96-118 (164)
193 PRK10194 ferredoxin-type prote 67.9 2 4.4E-05 38.6 0.5 16 37-52 107-122 (163)
194 TIGR02700 flavo_MJ0208 archaeo 67.9 1.8 3.9E-05 41.5 0.2 44 35-82 149-192 (234)
195 COG3367 Uncharacterized conser 67.8 35 0.00076 34.0 8.9 128 168-303 108-238 (339)
196 TIGR03315 Se_ygfK putative sel 67.4 1.5 3.3E-05 50.7 -0.5 56 38-95 889-949 (1012)
197 TIGR03457 sulphoacet_xsc sulfo 67.4 13 0.00028 40.8 6.8 112 139-254 182-300 (579)
198 COG1600 Uncharacterized Fe-S p 67.3 1.6 3.5E-05 43.8 -0.3 20 36-55 187-206 (337)
199 PRK14138 NAD-dependent deacety 67.2 8.7 0.00019 37.0 4.7 49 210-261 174-222 (244)
200 PTZ00408 NAD-dependent deacety 67.1 15 0.00033 35.3 6.3 42 212-256 170-211 (242)
201 TIGR02066 dsrB sulfite reducta 67.1 2.1 4.5E-05 43.5 0.4 48 36-84 183-231 (341)
202 cd00368 Molybdopterin-Binding 66.9 17 0.00037 37.1 7.2 48 354-401 155-211 (374)
203 TIGR02936 fdxN_nitrog ferredox 66.8 2 4.3E-05 34.3 0.2 19 36-54 23-41 (91)
204 PRK12387 formate hydrogenlyase 66.3 2.1 4.6E-05 39.2 0.3 21 35-55 74-94 (180)
205 TIGR02064 dsrA sulfite reducta 66.0 2.5 5.5E-05 43.8 0.8 17 38-54 246-262 (402)
206 PRK09124 pyruvate dehydrogenas 65.4 18 0.00039 39.6 7.4 102 140-254 188-295 (574)
207 TIGR00397 mauM_napG MauM/NapG 64.7 2.7 5.9E-05 39.6 0.7 21 35-55 54-74 (213)
208 PRK07525 sulfoacetaldehyde ace 64.6 16 0.00035 40.1 6.9 112 139-254 186-304 (588)
209 PRK05035 electron transport co 64.4 2.1 4.6E-05 47.6 -0.1 20 36-55 372-391 (695)
210 CHL00014 ndhI NADH dehydrogena 64.3 2.8 6.2E-05 37.9 0.7 19 35-53 100-118 (167)
211 PF13746 Fer4_18: 4Fe-4S diclu 64.3 2.4 5.2E-05 32.1 0.2 17 34-50 50-66 (69)
212 PRK08611 pyruvate oxidase; Pro 63.9 19 0.00041 39.6 7.1 102 140-254 190-297 (576)
213 TIGR03149 cyt_nit_nrfC cytochr 62.6 4.5 9.8E-05 38.5 1.8 21 35-55 126-146 (225)
214 TIGR01553 formate-DH-alph form 62.3 18 0.00039 42.4 6.9 48 353-400 219-275 (1009)
215 TIGR03394 indol_phenyl_DC indo 62.2 13 0.00028 40.4 5.5 108 140-254 188-303 (535)
216 cd07030 RNAP_D D subunit of Ar 62.1 3.3 7.1E-05 40.4 0.7 20 36-55 171-190 (259)
217 PF13247 Fer4_11: 4Fe-4S diclu 62.0 2.8 6E-05 34.2 0.2 20 36-55 42-61 (98)
218 TIGR01660 narH nitrate reducta 61.7 2.1 4.6E-05 44.4 -0.6 45 35-81 182-228 (492)
219 cd05009 SIS_GlmS_GlmD_2 SIS (S 61.4 71 0.0015 27.6 9.3 98 142-254 2-99 (153)
220 TIGR03224 benzo_boxA benzoyl-C 61.4 2.7 5.9E-05 43.9 0.1 43 36-82 12-54 (411)
221 PRK12809 putative oxidoreducta 61.2 3.6 7.9E-05 45.7 1.0 35 214-254 309-343 (639)
222 PRK10882 hydrogenase 2 protein 60.9 3.1 6.7E-05 41.9 0.3 22 33-54 171-205 (328)
223 TIGR02060 aprB adenosine phosp 60.9 2.4 5.2E-05 36.7 -0.4 23 34-56 45-67 (132)
224 TIGR02179 PorD_KorD 2-oxoacid: 59.9 3.7 7.9E-05 31.7 0.5 19 36-54 27-45 (78)
225 TIGR00402 napF ferredoxin-type 59.9 3.5 7.7E-05 33.8 0.5 19 36-54 36-54 (101)
226 PRK06276 acetolactate synthase 59.4 25 0.00055 38.6 7.2 108 140-254 190-304 (586)
227 PRK08266 hypothetical protein; 59.0 22 0.00047 38.7 6.5 103 140-253 192-296 (542)
228 PRK11302 DNA-binding transcrip 58.9 46 0.001 32.6 8.4 96 141-253 116-211 (284)
229 TIGR02512 Fe_only_hydrog hydro 58.5 3.9 8.5E-05 42.2 0.6 19 35-53 8-26 (374)
230 cd02766 MopB_3 The MopB_3 CD i 57.6 67 0.0015 34.5 9.9 50 213-263 327-376 (501)
231 PRK09326 F420H2 dehydrogenase 57.4 3.3 7.2E-05 42.1 -0.1 22 35-56 13-34 (341)
232 COG1145 NapF Ferredoxin [Energ 57.2 4.1 8.9E-05 32.7 0.4 25 33-57 62-86 (99)
233 PRK07064 hypothetical protein; 57.1 24 0.00051 38.4 6.5 103 139-253 189-297 (544)
234 TIGR03127 RuMP_HxlB 6-phospho 56.9 1.3E+02 0.0028 27.1 10.4 92 140-253 17-108 (179)
235 PF13183 Fer4_8: 4Fe-4S diclus 56.5 2.7 5.9E-05 30.1 -0.7 16 34-49 41-56 (57)
236 TIGR03393 indolpyr_decarb indo 56.3 19 0.00042 39.1 5.6 109 139-254 191-307 (539)
237 TIGR00403 ndhI NADH-plastoquin 56.0 6.5 0.00014 36.1 1.6 21 35-55 103-123 (183)
238 PRK07570 succinate dehydrogena 55.6 4.4 9.6E-05 39.2 0.4 19 33-51 211-229 (250)
239 cd02765 MopB_4 The MopB_4 CD i 55.5 8.5 0.00018 42.2 2.6 47 354-400 158-213 (567)
240 TIGR03315 Se_ygfK putative sel 55.4 4.2 9.1E-05 47.3 0.2 21 35-55 922-942 (1012)
241 KOG4166 Thiamine pyrophosphate 55.4 43 0.00094 34.6 7.2 110 141-251 286-406 (675)
242 PRK14028 pyruvate ferredoxin o 55.2 5 0.00011 40.3 0.7 18 35-52 248-265 (312)
243 PRK09623 vorD 2-ketoisovalerat 55.0 4.6 9.9E-05 33.4 0.3 18 36-53 53-70 (105)
244 PRK09898 hypothetical protein; 54.7 4.6 9.9E-05 37.9 0.4 46 34-82 121-169 (208)
245 TIGR02700 flavo_MJ0208 archaeo 54.6 3.4 7.3E-05 39.6 -0.6 22 34-55 177-198 (234)
246 PRK09624 porD pyuvate ferredox 54.6 4.5 9.9E-05 33.4 0.3 19 36-54 53-71 (105)
247 COG1142 HycB Fe-S-cluster-cont 54.4 3.6 7.7E-05 36.9 -0.4 38 40-81 59-96 (165)
248 PF06902 Fer4_19: Divergent 4F 54.3 4.4 9.5E-05 30.2 0.1 14 39-52 47-60 (64)
249 cd01407 SIR2-fam SIR2 family o 54.3 26 0.00057 33.0 5.5 45 210-257 163-207 (218)
250 COG4939 Major membrane immunog 54.2 83 0.0018 26.7 7.5 72 80-167 49-121 (147)
251 PRK13984 putative oxidoreducta 54.1 7.9 0.00017 42.8 2.1 83 14-96 12-115 (604)
252 TIGR03254 oxalate_oxc oxalyl-C 53.8 25 0.00054 38.4 5.9 108 139-254 192-301 (554)
253 PRK13936 phosphoheptose isomer 53.8 75 0.0016 29.4 8.4 38 213-253 110-147 (197)
254 TIGR02745 ccoG_rdxA_fixG cytoc 53.5 3.5 7.6E-05 43.2 -0.7 38 35-81 232-269 (434)
255 cd02767 MopB_ydeP The MopB_yde 53.5 54 0.0012 36.0 8.4 47 354-400 162-234 (574)
256 TIGR03149 cyt_nit_nrfC cytochr 53.4 5.1 0.00011 38.1 0.4 46 35-83 93-141 (225)
257 TIGR00384 dhsB succinate dehyd 53.3 6.5 0.00014 37.3 1.1 20 32-51 192-211 (220)
258 cd05013 SIS_RpiR RpiR-like pro 53.1 1.2E+02 0.0026 25.4 9.1 96 143-255 3-98 (139)
259 PRK15482 transcriptional regul 52.9 79 0.0017 31.0 8.9 96 141-253 123-218 (285)
260 PRK13795 hypothetical protein; 52.9 3.3 7.1E-05 45.9 -1.1 45 35-81 582-626 (636)
261 TIGR03478 DMSO_red_II_bet DMSO 52.8 4.1 8.9E-05 40.5 -0.3 20 34-53 129-150 (321)
262 PRK05858 hypothetical protein; 52.8 24 0.00052 38.4 5.6 104 140-254 190-295 (542)
263 cd07030 RNAP_D D subunit of Ar 52.7 4.1 8.8E-05 39.7 -0.4 20 34-53 199-218 (259)
264 cd02759 MopB_Acetylene-hydrata 52.7 1.1E+02 0.0024 32.6 10.6 48 214-263 329-376 (477)
265 cd02755 MopB_Thiosulfate-R-lik 52.5 1.1E+02 0.0025 32.3 10.5 48 214-263 330-377 (454)
266 PRK08166 NADH dehydrogenase su 52.4 91 0.002 36.1 10.4 121 138-263 478-606 (847)
267 PRK14993 tetrathionate reducta 52.4 8.7 0.00019 37.1 1.8 20 36-55 132-151 (244)
268 cd02771 MopB_NDH-1_NuoG2-N7 Mo 52.3 1.5E+02 0.0031 31.6 11.4 47 214-263 338-384 (472)
269 PRK00481 NAD-dependent deacety 52.3 25 0.00054 33.8 5.0 45 210-257 173-217 (242)
270 COG1149 MinD superfamily P-loo 52.2 7.3 0.00016 37.8 1.3 29 28-56 93-121 (284)
271 cd03132 GATase1_catalase Type 52.0 78 0.0017 27.2 7.8 93 157-251 3-102 (142)
272 cd05006 SIS_GmhA Phosphoheptos 51.4 1.8E+02 0.004 26.1 10.8 48 212-262 99-147 (177)
273 TIGR03287 methan_mark_16 putat 51.4 5.6 0.00012 40.8 0.4 53 36-95 304-358 (391)
274 PRK09625 porD pyruvate flavodo 51.1 3.1 6.8E-05 36.0 -1.3 19 36-54 61-79 (133)
275 cd02750 MopB_Nitrate-R-NarG-li 51.1 10 0.00022 40.4 2.3 48 354-401 169-225 (461)
276 TIGR01382 PfpI intracellular p 50.9 83 0.0018 27.8 8.0 44 208-252 52-100 (166)
277 cd01412 SIRT5_Af1_CobB SIRT5_A 50.8 27 0.0006 33.0 5.0 46 210-258 160-205 (224)
278 TIGR03479 DMSO_red_II_alp DMSO 50.6 10 0.00023 44.0 2.5 47 354-400 223-278 (912)
279 TIGR02951 DMSO_dmsB DMSO reduc 50.5 8.9 0.00019 34.3 1.5 21 35-55 96-116 (161)
280 TIGR01944 rnfB electron transp 50.1 3.6 7.9E-05 37.1 -1.1 21 35-55 114-134 (165)
281 COG0437 HybA Fe-S-cluster-cont 50.0 6.4 0.00014 36.6 0.5 39 40-84 75-117 (203)
282 PRK10886 DnaA initiator-associ 49.9 59 0.0013 30.2 6.9 40 212-254 107-146 (196)
283 PRK09939 putative oxidoreducta 49.0 48 0.001 37.7 7.3 47 354-400 207-280 (759)
284 cd02770 MopB_DmsA-EC This CD ( 48.8 35 0.00076 37.8 6.2 47 354-400 165-224 (617)
285 PRK15449 ferredoxin-like prote 48.7 4.4 9.5E-05 32.8 -0.7 28 22-53 23-50 (95)
286 cd01408 SIRT1 SIRT1: Eukaryoti 48.5 26 0.00057 33.5 4.5 43 210-256 171-213 (235)
287 COG1139 Uncharacterized conser 48.3 8.5 0.00019 39.7 1.1 46 9-54 325-378 (459)
288 PRK11557 putative DNA-binding 48.0 1.1E+02 0.0023 29.9 9.0 97 141-254 116-212 (278)
289 TIGR02745 ccoG_rdxA_fixG cytoc 48.0 5 0.00011 42.1 -0.6 19 70-88 234-252 (434)
290 PRK09477 napH quinol dehydroge 47.5 10 0.00022 37.2 1.5 15 40-54 179-193 (271)
291 PRK09476 napG quinol dehydroge 47.3 11 0.00024 36.6 1.7 19 36-54 61-79 (254)
292 PRK11337 DNA-binding transcrip 47.3 82 0.0018 31.0 8.0 97 141-254 128-224 (292)
293 cd01411 SIR2H SIR2H: Uncharact 47.2 37 0.00079 32.3 5.2 45 210-258 167-211 (225)
294 PRK07092 benzoylformate decarb 46.8 43 0.00094 36.3 6.4 111 139-255 192-309 (530)
295 cd00296 SIR2 SIR2 superfamily 46.5 34 0.00074 32.2 4.9 45 210-257 165-209 (222)
296 PRK12474 hypothetical protein; 46.1 42 0.00091 36.3 6.1 84 139-225 187-277 (518)
297 COG1880 CdhB CO dehydrogenase/ 45.9 2.2E+02 0.0047 25.4 11.4 115 146-266 28-156 (170)
298 cd02753 MopB_Formate-Dh-H Form 45.9 13 0.00028 40.1 2.2 49 354-402 155-212 (512)
299 TIGR03287 methan_mark_16 putat 45.8 10 0.00022 39.0 1.2 12 140-152 371-382 (391)
300 TIGR01591 Fdh-alpha formate de 45.5 73 0.0016 35.6 8.1 49 354-402 154-211 (671)
301 PRK00783 DNA-directed RNA poly 45.4 7.4 0.00016 38.0 0.1 20 35-54 170-189 (263)
302 PRK15055 anaerobic sulfite red 45.2 9.1 0.0002 38.8 0.8 18 34-51 307-324 (344)
303 COG3592 Uncharacterized conser 45.2 6.2 0.00013 29.4 -0.3 12 41-52 59-70 (74)
304 cd02754 MopB_Nitrate-R-NapA-li 45.1 14 0.00031 40.3 2.4 48 354-401 156-214 (565)
305 TIGR02066 dsrB sulfite reducta 44.3 8 0.00017 39.3 0.2 20 35-54 215-234 (341)
306 PF03243 MerB: Alkylmercury ly 43.9 27 0.00059 29.9 3.4 76 66-148 36-122 (127)
307 COG2878 Predicted NADH:ubiquin 43.7 11 0.00024 34.1 1.0 46 40-85 121-167 (198)
308 COG0479 FrdB Succinate dehydro 43.6 7.2 0.00016 37.1 -0.2 22 32-53 196-217 (234)
309 PRK05333 NAD-dependent deacety 43.4 53 0.0012 32.4 5.9 47 210-259 210-256 (285)
310 PF13580 SIS_2: SIS domain; PD 43.1 1.3E+02 0.0029 25.9 7.8 37 211-250 100-136 (138)
311 PRK12385 fumarate reductase ir 42.7 11 0.00023 36.5 0.8 20 32-51 201-220 (244)
312 PRK12769 putative oxidoreducta 42.5 15 0.00033 41.0 2.1 40 35-76 86-125 (654)
313 PRK08640 sdhB succinate dehydr 42.3 7.1 0.00015 37.8 -0.5 17 35-51 153-169 (249)
314 PRK07586 hypothetical protein; 42.0 55 0.0012 35.3 6.3 85 139-225 183-273 (514)
315 COG2878 Predicted NADH:ubiquin 41.9 6.6 0.00014 35.5 -0.7 30 36-65 147-176 (198)
316 cd02768 MopB_NADH-Q-OR-NuoG2 M 41.8 76 0.0016 32.6 7.1 46 354-401 147-202 (386)
317 TIGR01945 rnfC electron transp 41.5 10 0.00022 40.0 0.5 17 35-51 364-380 (435)
318 PRK00783 DNA-directed RNA poly 41.4 8.8 0.00019 37.5 -0.0 21 33-53 198-218 (263)
319 PF08300 HCV_NS5a_1a: Hepatiti 41.1 39 0.00085 24.7 3.2 26 70-95 18-44 (62)
320 COG0028 IlvB Thiamine pyrophos 40.7 39 0.00085 36.8 4.8 40 277-320 190-229 (550)
321 PRK11543 gutQ D-arabinose 5-ph 40.7 2.1E+02 0.0046 28.4 10.0 96 142-253 30-125 (321)
322 PRK08764 ferredoxin; Provision 40.6 12 0.00026 32.5 0.7 20 35-54 86-105 (135)
323 PRK07586 hypothetical protein; 40.5 39 0.00085 36.4 4.8 40 277-320 187-226 (514)
324 PRK09129 NADH dehydrogenase su 40.4 2.4E+02 0.0053 32.2 11.4 49 213-263 536-585 (776)
325 PRK10330 formate dehydrogenase 40.2 17 0.00037 33.2 1.7 47 33-83 55-103 (181)
326 PRK05113 electron transport co 40.2 9.2 0.0002 35.4 -0.1 20 35-54 115-134 (191)
327 PRK12474 hypothetical protein; 39.9 40 0.00087 36.4 4.8 40 277-320 191-230 (518)
328 TIGR01701 Fdhalpha-like oxidor 39.8 1.1E+02 0.0024 34.7 8.5 47 354-400 197-270 (743)
329 cd02757 MopB_Arsenate-R This C 39.7 18 0.00038 39.2 2.0 51 353-403 160-221 (523)
330 cd05014 SIS_Kpsf KpsF-like pro 39.7 2.1E+02 0.0046 23.8 8.5 43 209-254 42-84 (128)
331 PF08115 Toxin_28: SFI toxin f 39.5 12 0.00027 23.3 0.4 18 38-65 18-35 (35)
332 PRK00941 acetyl-CoA decarbonyl 39.5 6.7 0.00014 43.9 -1.3 50 35-84 405-459 (781)
333 cd03134 GATase1_PfpI_like A ty 39.3 1.6E+02 0.0035 25.8 8.0 44 208-252 54-102 (165)
334 PF07755 DUF1611: Protein of u 39.0 62 0.0013 32.2 5.5 160 131-306 43-204 (301)
335 PRK05035 electron transport co 38.6 8.2 0.00018 43.1 -0.8 51 1-52 377-427 (695)
336 TIGR03478 DMSO_red_II_bet DMSO 38.3 14 0.00031 36.8 0.9 19 36-54 164-182 (321)
337 KOG4166 Thiamine pyrophosphate 38.2 37 0.00081 35.0 3.8 35 277-311 288-322 (675)
338 TIGR01582 FDH-beta formate deh 38.1 11 0.00024 37.2 0.1 16 36-51 126-141 (283)
339 PRK05950 sdhB succinate dehydr 38.1 16 0.00034 34.9 1.2 21 32-52 196-216 (232)
340 PRK13552 frdB fumarate reducta 37.9 16 0.00034 35.2 1.1 22 31-52 203-224 (239)
341 PRK07860 NADH dehydrogenase su 37.8 95 0.0021 35.6 7.5 47 354-400 375-432 (797)
342 COG1144 Pyruvate:ferredoxin ox 37.5 11 0.00023 30.0 -0.0 17 36-52 68-84 (91)
343 cd05005 SIS_PHI Hexulose-6-pho 37.0 3.1E+02 0.0067 24.6 11.2 92 140-253 20-111 (179)
344 TIGR01012 Sa_S2_E_A ribosomal 36.8 3.5E+02 0.0076 25.1 10.8 98 141-257 47-145 (196)
345 TIGR00314 cdhA CO dehydrogenas 36.6 8.7 0.00019 43.0 -0.9 50 35-84 400-454 (784)
346 PRK12386 fumarate reductase ir 36.6 19 0.0004 34.9 1.4 21 33-53 199-219 (251)
347 TIGR01660 narH nitrate reducta 36.5 12 0.00025 39.2 -0.0 19 35-53 215-233 (492)
348 TIGR02163 napH_ ferredoxin-typ 36.5 16 0.00035 35.4 1.0 46 6-53 174-220 (255)
349 PRK15488 thiosulfate reductase 35.9 24 0.00051 40.2 2.3 47 354-400 195-252 (759)
350 COG1142 HycB Fe-S-cluster-cont 35.5 13 0.00028 33.4 0.1 21 36-56 84-104 (165)
351 COG1150 HdrC Heterodisulfide r 35.4 10 0.00022 34.8 -0.6 48 36-83 41-99 (195)
352 PRK12575 succinate dehydrogena 35.4 17 0.00037 34.8 0.9 20 33-52 200-219 (235)
353 PRK11574 oxidative-stress-resi 35.2 1.6E+02 0.0034 26.9 7.5 44 208-252 58-107 (196)
354 TIGR00509 bisC_fam molybdopter 35.1 26 0.00057 39.9 2.6 47 354-400 166-230 (770)
355 PRK12809 putative oxidoreducta 34.9 17 0.00037 40.5 1.0 45 33-81 53-99 (639)
356 PRK10892 D-arabinose 5-phospha 34.9 3.3E+02 0.0072 27.2 10.3 97 142-254 35-131 (326)
357 TIGR02912 sulfite_red_C sulfit 34.6 13 0.00029 37.3 0.1 20 35-54 202-221 (314)
358 PRK11168 glpC sn-glycerol-3-ph 34.6 14 0.00029 38.4 0.1 38 213-251 160-197 (396)
359 PF00220 Hormone_4: Neurohypop 34.5 18 0.00039 15.9 0.4 7 43-49 3-9 (9)
360 PRK09853 putative selenate red 34.3 25 0.00055 41.0 2.2 22 35-59 927-948 (1019)
361 cd02762 MopB_1 The MopB_1 CD i 34.2 48 0.001 36.0 4.3 48 214-263 377-424 (539)
362 TIGR02951 DMSO_dmsB DMSO reduc 34.1 18 0.00038 32.4 0.8 22 33-54 61-84 (161)
363 TIGR03394 indol_phenyl_DC indo 34.0 50 0.0011 35.9 4.4 40 277-320 191-230 (535)
364 PRK09259 putative oxalyl-CoA d 33.9 56 0.0012 35.8 4.8 40 277-320 203-242 (569)
365 KOG1184 Thiamine pyrophosphate 33.6 1.4E+02 0.003 31.8 7.2 141 119-267 179-327 (561)
366 PRK06154 hypothetical protein; 33.4 57 0.0012 35.7 4.7 40 277-320 204-243 (565)
367 TIGR03290 CoB_CoM_SS_C CoB--Co 33.4 20 0.00044 31.3 1.0 23 33-55 45-67 (144)
368 PRK08327 acetolactate synthase 33.1 57 0.0012 35.7 4.7 40 277-320 210-249 (569)
369 PRK06965 acetolactate synthase 33.1 57 0.0012 35.9 4.7 40 277-320 211-250 (587)
370 TIGR00273 iron-sulfur cluster- 32.9 9.3 0.0002 40.2 -1.4 23 31-53 290-312 (432)
371 PRK06725 acetolactate synthase 32.3 59 0.0013 35.6 4.6 40 277-320 204-243 (570)
372 TIGR03254 oxalate_oxc oxalyl-C 32.1 63 0.0014 35.2 4.8 40 277-320 196-235 (554)
373 PRK07418 acetolactate synthase 32.1 58 0.0013 36.1 4.6 40 277-320 214-253 (616)
374 TIGR01504 glyox_carbo_lig glyo 32.0 56 0.0012 35.9 4.4 40 277-320 192-231 (588)
375 PRK08155 acetolactate synthase 31.9 63 0.0014 35.3 4.7 40 277-320 201-240 (564)
376 PRK12576 succinate dehydrogena 31.9 18 0.0004 35.6 0.5 18 35-52 153-170 (279)
377 PF00384 Molybdopterin: Molybd 31.7 13 0.00028 38.9 -0.6 51 353-403 109-169 (432)
378 PRK06456 acetolactate synthase 31.7 61 0.0013 35.5 4.6 40 277-320 197-236 (572)
379 PRK14101 bifunctional glucokin 31.6 1.6E+02 0.0035 32.8 8.0 43 211-256 512-554 (638)
380 COG3961 Pyruvate decarboxylase 31.6 1E+02 0.0022 32.9 5.9 107 140-255 196-312 (557)
381 TIGR00118 acolac_lg acetolacta 31.5 62 0.0014 35.3 4.7 40 277-320 191-230 (558)
382 PRK08527 acetolactate synthase 31.4 66 0.0014 35.2 4.8 40 277-320 193-232 (563)
383 PRK05858 hypothetical protein; 31.1 65 0.0014 35.0 4.7 40 277-320 193-232 (542)
384 PRK14993 tetrathionate reducta 30.8 22 0.00049 34.2 0.9 21 33-53 97-119 (244)
385 PRK07282 acetolactate synthase 30.8 65 0.0014 35.3 4.6 40 277-320 200-239 (566)
386 KOG1185 Thiamine pyrophosphate 30.7 69 0.0015 33.8 4.4 35 277-311 207-241 (571)
387 PRK06048 acetolactate synthase 30.5 66 0.0014 35.1 4.6 40 277-320 197-236 (561)
388 TIGR03457 sulphoacet_xsc sulfo 30.5 68 0.0015 35.2 4.8 40 277-320 186-225 (579)
389 PRK12576 succinate dehydrogena 30.3 23 0.0005 34.9 1.0 20 32-51 204-223 (279)
390 TIGR01383 not_thiJ DJ-1 family 30.3 2.6E+02 0.0055 24.9 7.9 43 208-251 55-103 (179)
391 PF10087 DUF2325: Uncharacteri 30.3 2.8E+02 0.006 22.1 7.2 69 173-251 14-82 (97)
392 PRK08322 acetolactate synthase 30.3 62 0.0013 35.2 4.4 40 277-320 186-225 (547)
393 COG0437 HybA Fe-S-cluster-cont 30.2 30 0.00065 32.2 1.6 18 38-55 104-121 (203)
394 TIGR03294 FrhG coenzyme F420 h 30.1 4.7 0.0001 38.4 -3.8 19 36-54 176-194 (228)
395 PRK07789 acetolactate synthase 30.0 68 0.0015 35.5 4.7 40 277-320 221-260 (612)
396 TIGR01580 narG respiratory nit 29.9 33 0.00072 40.6 2.2 46 354-399 244-298 (1235)
397 PRK12771 putative glutamate sy 29.9 21 0.00046 39.0 0.7 16 38-53 514-529 (564)
398 TIGR00173 menD 2-succinyl-5-en 29.9 52 0.0011 34.6 3.6 39 277-320 201-239 (432)
399 PRK13937 phosphoheptose isomer 29.9 4.3E+02 0.0092 24.1 9.3 39 212-253 104-142 (188)
400 TIGR02418 acolac_catab acetola 29.5 70 0.0015 34.7 4.6 40 277-320 185-224 (539)
401 COG1139 Uncharacterized conser 29.5 16 0.00035 37.7 -0.3 18 32-49 306-323 (459)
402 COG4821 Uncharacterized protei 29.2 2.3E+02 0.0051 26.4 7.0 41 209-252 99-139 (243)
403 PRK07979 acetolactate synthase 29.2 73 0.0016 34.9 4.7 40 277-320 196-235 (574)
404 PRK06112 acetolactate synthase 29.1 72 0.0016 35.0 4.7 40 277-320 203-242 (578)
405 TIGR03393 indolpyr_decarb indo 29.1 70 0.0015 34.8 4.5 40 277-320 195-234 (539)
406 PLN02573 pyruvate decarboxylas 29.0 65 0.0014 35.4 4.2 40 277-320 214-253 (578)
407 PRK08617 acetolactate synthase 28.9 69 0.0015 34.9 4.4 39 278-320 192-230 (552)
408 PRK08199 thiamine pyrophosphat 28.8 67 0.0014 35.1 4.3 40 277-320 194-233 (557)
409 CHL00099 ilvB acetohydroxyacid 28.8 73 0.0016 35.0 4.6 40 277-320 207-246 (585)
410 COG1832 Predicted CoA-binding 28.7 1.2E+02 0.0027 26.3 4.9 43 211-255 12-54 (140)
411 PRK10882 hydrogenase 2 protein 28.7 21 0.00046 36.0 0.4 47 35-83 111-159 (328)
412 PRK08979 acetolactate synthase 28.7 74 0.0016 34.8 4.7 40 277-320 196-235 (572)
413 PRK08978 acetolactate synthase 28.6 76 0.0017 34.5 4.7 39 278-320 187-225 (548)
414 PRK07092 benzoylformate decarb 28.6 71 0.0015 34.6 4.5 39 278-320 197-235 (530)
415 TIGR02720 pyruv_oxi_spxB pyruv 28.0 79 0.0017 34.7 4.7 38 277-320 190-227 (575)
416 COG0846 SIR2 NAD-dependent pro 27.9 94 0.002 30.1 4.6 47 209-258 177-223 (250)
417 cd02773 MopB_Res-Cmplx1_Nad11 27.9 1.4E+02 0.0031 30.5 6.4 41 354-394 144-194 (375)
418 PRK07525 sulfoacetaldehyde ace 27.8 80 0.0017 34.7 4.7 40 277-320 190-229 (588)
419 PRK06466 acetolactate synthase 27.7 80 0.0017 34.6 4.7 40 277-320 196-235 (574)
420 TIGR02060 aprB adenosine phosp 27.6 23 0.00049 30.7 0.3 19 35-53 9-32 (132)
421 TIGR01706 NAPA periplasmic nit 27.5 67 0.0014 37.0 4.2 50 214-263 474-523 (830)
422 PRK11382 frlB fructoselysine-6 27.5 4E+02 0.0088 26.9 9.5 43 208-253 251-294 (340)
423 PLN00129 succinate dehydrogena 27.3 30 0.00065 34.0 1.1 20 32-51 242-261 (276)
424 PRK11557 putative DNA-binding 27.2 2.3E+02 0.005 27.5 7.5 28 373-400 201-228 (278)
425 cd02760 MopB_Phenylacetyl-CoA- 27.1 42 0.00091 38.2 2.4 46 354-399 172-227 (760)
426 PRK07710 acetolactate synthase 27.0 82 0.0018 34.5 4.6 40 277-320 205-244 (571)
427 PRK09124 pyruvate dehydrogenas 27.0 89 0.0019 34.2 4.9 38 277-320 191-228 (574)
428 TIGR00314 cdhA CO dehydrogenas 26.9 19 0.00041 40.4 -0.4 34 425-462 722-755 (784)
429 PRK06457 pyruvate dehydrogenas 26.7 82 0.0018 34.3 4.5 38 277-320 185-222 (549)
430 PF02552 CO_dh: CO dehydrogena 26.5 71 0.0015 28.8 3.3 25 277-301 24-48 (167)
431 PRK08640 sdhB succinate dehydr 26.3 31 0.00068 33.3 1.1 21 32-52 207-227 (249)
432 PRK11269 glyoxylate carboligas 26.3 86 0.0019 34.5 4.6 40 277-320 193-232 (591)
433 PF15269 zf-C2H2_7: Zinc-finge 26.1 39 0.00085 22.9 1.1 29 55-84 7-35 (54)
434 PRK07524 hypothetical protein; 26.0 91 0.002 33.8 4.7 38 277-320 191-228 (535)
435 PRK11382 frlB fructoselysine-6 26.0 5.4E+02 0.012 26.0 10.1 101 139-253 28-128 (340)
436 PLN02980 2-oxoglutarate decarb 25.4 1.7E+02 0.0037 36.6 7.4 109 140-255 511-634 (1655)
437 PRK13532 nitrate reductase cat 25.2 66 0.0014 37.1 3.6 50 214-263 474-523 (830)
438 cd03135 GATase1_DJ-1 Type 1 gl 25.2 2.5E+02 0.0054 24.4 6.7 43 208-251 52-100 (163)
439 PRK08273 thiamine pyrophosphat 25.1 89 0.0019 34.4 4.5 38 277-320 198-235 (597)
440 COG3340 PepE Peptidase E [Amin 25.1 2.3E+02 0.0049 26.7 6.3 101 133-249 10-123 (224)
441 cd02764 MopB_PHLH The MopB_PHL 25.0 80 0.0017 34.2 4.0 48 214-263 383-430 (524)
442 PRK08266 hypothetical protein; 25.0 1E+02 0.0022 33.4 4.9 37 278-320 196-232 (542)
443 TIGR03290 CoB_CoM_SS_C CoB--Co 24.8 23 0.00049 31.0 -0.2 16 35-50 3-18 (144)
444 PRK01310 hypothetical protein; 24.8 1.4E+02 0.0029 24.7 4.3 54 392-445 15-68 (104)
445 PLN02470 acetolactate synthase 24.6 1E+02 0.0022 33.9 4.8 38 277-320 205-242 (585)
446 PRK06276 acetolactate synthase 24.5 96 0.0021 34.1 4.6 40 277-320 193-232 (586)
447 KOG1185 Thiamine pyrophosphate 24.4 1.4E+02 0.003 31.7 5.3 105 140-253 204-311 (571)
448 PRK05352 Na(+)-translocating N 24.4 17 0.00038 38.3 -1.2 30 35-64 375-405 (448)
449 PTZ00410 NAD-dependent SIR2; P 24.0 1E+02 0.0023 31.3 4.3 44 209-256 200-243 (349)
450 PRK08611 pyruvate oxidase; Pro 23.9 1.1E+02 0.0023 33.7 4.8 37 278-320 194-230 (576)
451 PRK06882 acetolactate synthase 23.7 1E+02 0.0023 33.7 4.7 40 277-320 196-235 (574)
452 cd02769 MopB_DMSOR-BSOR-TMAOR 23.6 83 0.0018 34.8 3.9 47 215-263 409-455 (609)
453 PRK11070 ssDNA exonuclease Rec 23.5 4.8E+02 0.01 28.7 9.6 103 138-253 54-160 (575)
454 cd01916 ACS_1 Acetyl-CoA synth 23.4 26 0.00057 39.2 -0.1 15 36-50 405-419 (731)
455 cd02751 MopB_DMSOR-like The Mo 23.2 86 0.0019 34.6 3.9 48 214-263 406-453 (609)
456 cd03140 GATase1_PfpI_3 Type 1 23.1 2.7E+02 0.0058 24.7 6.6 43 208-251 52-98 (170)
457 TIGR01936 nqrA NADH:ubiquinone 23.0 21 0.00047 37.6 -0.8 29 36-64 375-404 (447)
458 TIGR00384 dhsB succinate dehyd 22.7 32 0.00069 32.5 0.4 19 34-52 138-156 (220)
459 PRK08318 dihydropyrimidine deh 22.6 29 0.00063 36.4 0.1 15 35-49 343-357 (420)
460 TIGR02910 sulfite_red_A sulfit 22.6 35 0.00076 34.5 0.6 16 35-50 302-317 (334)
461 PF12801 Fer4_5: 4Fe-4S bindin 22.3 23 0.0005 24.3 -0.5 16 42-57 24-39 (48)
462 COG1035 FrhB Coenzyme F420-red 22.1 32 0.0007 34.6 0.3 20 35-55 6-25 (332)
463 PRK07064 hypothetical protein; 22.1 1.2E+02 0.0025 33.0 4.6 37 277-320 193-229 (544)
464 PF13368 Toprim_C_rpt: Topoiso 21.9 1.2E+02 0.0026 22.2 3.2 18 132-149 31-48 (61)
465 cd02758 MopB_Tetrathionate-Ra 21.2 86 0.0019 35.6 3.4 50 214-263 489-540 (735)
466 PRK09107 acetolactate synthase 21.1 1.2E+02 0.0027 33.4 4.5 42 277-320 202-243 (595)
467 PF14258 DUF4350: Domain of un 21.0 2.6E+02 0.0056 20.6 5.1 37 214-251 34-70 (70)
468 PF01866 Diphthamide_syn: Puta 21.0 8.3E+02 0.018 24.3 12.2 162 135-317 73-237 (307)
469 PRK02947 hypothetical protein; 20.9 5.8E+02 0.012 24.4 8.7 42 210-254 102-143 (246)
470 PRK13938 phosphoheptose isomer 20.9 1.9E+02 0.0042 26.7 5.1 39 212-253 111-149 (196)
471 COG2768 Uncharacterized Fe-S c 20.8 46 0.001 32.9 1.0 18 35-52 222-239 (354)
472 KOG2792 Putative cytochrome C 20.7 60 0.0013 31.3 1.7 35 10-48 113-157 (280)
473 PRK14990 anaerobic dimethyl su 20.7 69 0.0015 36.8 2.6 48 354-401 230-291 (814)
474 COG3962 Acetolactate synthase 20.5 3.2E+02 0.0069 29.0 6.9 110 141-256 217-333 (617)
475 COG0036 Rpe Pentose-5-phosphat 20.5 7.4E+02 0.016 23.5 9.1 78 212-311 129-213 (220)
476 PRK12577 succinate dehydrogena 20.3 43 0.00094 33.9 0.7 19 33-51 208-226 (329)
477 PRK06546 pyruvate dehydrogenas 20.2 1.3E+02 0.0029 32.9 4.6 37 278-320 192-228 (578)
No 1
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.6e-114 Score=940.01 Aligned_cols=520 Identities=51% Similarity=0.871 Sum_probs=471.6
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
||||||+||+|..+||+++||.+++|+||.+++++|++||||||||||||||+|||+|++||||+++++|+|++|++||+
T Consensus 152 rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~vGC~ 231 (687)
T PRK09130 152 RCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSN 231 (687)
T ss_pred HHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccccccccCcceeeeccccCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEE
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVG 160 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~ 160 (523)
|.|++|+|+|+||+|++++++|++|||+||||+|++++++||++||+|+ +|+|+++||||||+.|+++|+++.++++++
T Consensus 232 i~v~~r~~~V~ri~pr~n~~vN~g~iC~KgRf~~d~l~~~RL~~PliR~-~G~~~~iSWdEAl~~iA~kL~~~~~~~ia~ 310 (687)
T PRK09130 232 IRVDTRGREVMRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRK-NGKLVPASWDEAFAAIAAKIKGTPGEKIAA 310 (687)
T ss_pred eEEEEeCCEEEEEeCCCCCCCCCcccccccccccccccccccCCccEec-CCceeecCHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999999999999999999999999999998 899999999999999999999998889999
Q ss_pred EeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHH
Q 009859 161 IAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTV 240 (523)
Q Consensus 161 ~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~ 240 (523)
++|+..++|+++++++|++.+|++|+++......+.......+.++.++.|+++||+||+||+||++++|+++.|+|+++
T Consensus 311 i~g~~~~~E~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~rirka~ 390 (687)
T PRK09130 311 IAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRW 390 (687)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHHHHHHHH
Confidence 99999999999999999999999998865432111111233445677899999999999999999999999999999998
Q ss_pred HhCCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 241 RANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 241 ~~~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+++++||++|||+.+.|+..+++|+++..+.+++.|.+++|+.|+++++++|++|.|+.++.+|..++.++.+|+.++|+
T Consensus 391 ~~g~~kIivIdpr~~~t~~~~~lg~~~~~l~~l~~g~~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~ 470 (687)
T PRK09130 391 RAGGFKIAVIGEQADLTYPYEYLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGA 470 (687)
T ss_pred HcCCCeEEEEcCccccCccccccCCCHHHHHHHHHhHHHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCC
Confidence 74446999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeecchhhHHhhHHhcCCCCCccc-------cccCccEEEEEcCCCCCCCCCCCCceEEEEcccCCcccCcce
Q 009859 321 IRPDWNGLNVLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRAN 393 (523)
Q Consensus 321 ~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~-------~~~~i~~l~~~g~n~~~~~~l~~~~fvV~~d~~~t~ta~~AD 393 (523)
++++|+|+++++..+|.+|+.++|+.|.... ..+++|++|++|+||+....+ +.+|+|+||+|+|+|+++||
T Consensus 471 ~~~~~~G~~~L~~~an~~ga~dlG~~p~~~g~~~~~ll~~g~ik~l~llgadp~~~~~~-~~~fvV~qd~~~t~ta~~AD 549 (687)
T PRK09130 471 VRDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKG-KSAFVIYQGHHGDRGAHRAD 549 (687)
T ss_pred ccCCCCCeEecCCchHHHHHHHhcCCCCcccccHHHHHhCCCcCEEEEecCChhhcccc-cCCEEEEecccCCccHhhCC
Confidence 9999999999999999999999998875421 258899999999999854333 24699999999999999999
Q ss_pred EEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCC
Q 009859 394 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREP 473 (523)
Q Consensus 394 vvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~ 473 (523)
||||+++|+|++|+|+|+|||+|+++++++|+|++|+||+||++|+++||.+++|++.+++++++.+..|.|..++.+++
T Consensus 550 VVLP~a~~~Ek~Gt~~n~egrvq~~~~av~p~gear~dw~Il~~La~~lg~~~~~~~~~~l~~~l~~~~p~~~~i~~~~~ 629 (687)
T PRK09130 550 VILPGAAYTEKSGTYVNTEGRVQLANRAVFPPGEAKEDWAILRALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITP 629 (687)
T ss_pred EEEcCCCccccCCeEECCCCceEEeccccCCCcccchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCccccCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887776
Q ss_pred CCCCCCC--CcccccccCCCCcccccccccCCchhhhccHHHHHHHHHHhc
Q 009859 474 ATLGPSL--KPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK 522 (523)
Q Consensus 474 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~d~~~r~s~~~~~~~~~~~~ 522 (523)
..+.... ...........+|.+.+.|||+||+|+|+|++|++|+++..+
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~t~~i~r~s~~m~~~~~~~~~ 680 (687)
T PRK09130 630 SKDAKDLAALASKKGKLSKAPFTSPVKDFYLTNPIARASATMAECSALASG 680 (687)
T ss_pred ccchhhhhhhhcccccccccccccccccceeccHHHHhhHHHHHHHHHHHh
Confidence 5431100 000011234457889999999999999999999999998754
No 2
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=9.4e-106 Score=786.98 Aligned_cols=522 Identities=58% Similarity=0.917 Sum_probs=490.5
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
|||||+.||+|.++||++|||.+++||||+++.|.||+|||+||+|||||||||||+|+|||||+++++||+.++.+|+|
T Consensus 182 rcvrfaseiagv~dlgttgrg~d~qigtyvek~f~selsgniidicpvgaltskpyaf~arpwe~rktesidv~davgsn 261 (708)
T KOG2282|consen 182 RCVRFASEIAGVDDLGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSN 261 (708)
T ss_pred HHHHHHHhhcCCcccccccCCCcchHHHHHHHHHHHhhcCCeeeeccccccccCcceeeccccccccccceehhhhccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEE
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVG 160 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~ 160 (523)
|.|.+|.|+|+||.|+.|+++|+.||.||.||.||++..+||..||+|..+|.++.+||++||..++.+|++.+++.++.
T Consensus 262 ivvs~rt~ev~ri~pr~nedineewi~dksrfa~dglkrqrl~~pmvr~~~g~l~~~~we~al~~va~~~~~~~~~~~a~ 341 (708)
T KOG2282|consen 262 IVVSTRTGEVLRILPRMNEDINEEWISDKSRFAYDGLKRQRLTEPMVRNEDGLLKAVSWEDALSRVAGMLQSFQGKQIAA 341 (708)
T ss_pred EEEecCCccceeeccccccccchhhhcccceeeecchhhhhhcccceeCCCCceeeeeHHHHHHHHHHHHHhcCccceee
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHH
Q 009859 161 IAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTV 240 (523)
Q Consensus 161 ~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~ 240 (523)
+.|+..+.|.+.+++.|.+.+|+.++.+.....+.+.+++++|.++.++.-++++|.++++|.||+.+.|..+.|+|+..
T Consensus 342 iag~L~daea~valkdl~nrl~se~v~te~~f~s~gtdlrsnyl~nt~iag~e~adavllVgtnpr~eap~~narirks~ 421 (708)
T KOG2282|consen 342 IAGGLVDAEALVALKDLLNRVGSENVCTEEVFPGGGTDLRSNYLLNTTIAGVEEADAVLLVGTNPRFEAPLVNARIRKSW 421 (708)
T ss_pred eccchhhHHHHHHHHHHHhhcCcccceeecccCCCCchhhhhhhhhcchhhhcccceeeeecCCccccccccchhhheee
Confidence 99999999999999999999999999888877777789999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 241 RANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 241 ~~~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
..+..++.+|+|..+++|...|||.++..+.++++|++++++.++++++|+||.|.+..+..++..+...+..++..++.
T Consensus 422 ~~~~~qv~~Ig~~aDl~y~~~~lga~~~i~~~Ia~g~h~fak~l~~ak~p~iIvga~~l~r~dgaAil~~v~qia~kL~~ 501 (708)
T KOG2282|consen 422 LHNDLQVALIGPPVDLTYDYDHLGASAKILKDIASGSHPFSKVLKEAKKPAIIVGASALQRNDGAAILAAVSSIAQKLRM 501 (708)
T ss_pred eeccceeeeecCCcceeeeeccCCCcHHHHHHHHcCccHHHHHhccCCCceEEEcchhhcccchhHHHHHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCceeecchhhHHhhHHhcCCCCCccc-cccCccEEEEEcCCC--CCCCCCCCCceEEEEcccCCcccCcceEEec
Q 009859 321 IRPDWNGLNVLLLNAAQAAALDLGLVPESSN-SIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILP 397 (523)
Q Consensus 321 ~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~-~~~~i~~l~~~g~n~--~~~~~l~~~~fvV~~d~~~t~ta~~ADvvLP 397 (523)
+ ..|..+++|...+...|+++.|..+.... ...+.|++|++|+|. +..+.+++.+|+|||.||.+..+..|||+||
T Consensus 502 ~-~~w~~~nvL~~~a~q~~aLd~gyk~ga~~~~k~~~KVlylL~Ad~g~vt~~~lPkd~fvvyqghhgD~ga~~Advvlp 580 (708)
T KOG2282|consen 502 T-PDWKVLNVLQRIAAQVGALDVGYKAGVAAIRKNPPKVLFLLGADAGKVTRQDLPKDCFVVYQGHHGDVGAPIADVVLP 580 (708)
T ss_pred C-CcceeehHHHHhhhhhhhccccchhhhHHHhcCCceEEEEeccCCCcchhhcCChhheEEeeeeecccccccceeecc
Confidence 6 67999999999999999999988765432 567899999999886 4567899999999999999999999999999
Q ss_pred CCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCC
Q 009859 398 ASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLG 477 (523)
Q Consensus 398 ~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~ 477 (523)
.+.|.|++|+|+|.||+.|...+++.|+|++|.||+|++.|++.-|.++||++.+++++.+.+..|+|.+++++++..+.
T Consensus 581 gaaytekeGtyvntegr~Qqt~pav~ppg~ar~dwkIirALSevsg~~Lpyssl~~vr~rle~vaPnLVr~de~E~Aafg 660 (708)
T KOG2282|consen 581 GAAYTEKEGTYVNTEGRAQQTKPAVSPPGDAREDWKIIRALSEVSGKTLPYDTLDEVRNRLEEVAPNLVRYDDLEPAAFG 660 (708)
T ss_pred eeeEecccceeecccCccccccCCCCCCcccccchHHHHHHHHhcCCCCCcccHHHHHHhhhhcCCcceecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCcccccccCCCCccc--ccccccCCchhhhccHHHHHHHHHHhcC
Q 009859 478 PSLKPEIKSEMDLTPFGS--AVENFYMTDSITRASKTMAQCSAMLLKK 523 (523)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~--~~~~~y~~d~~~r~s~~~~~~~~~~~~~ 523 (523)
....+........++|.+ -.+|||+||+|+|+|++|+|||++..||
T Consensus 661 psakp~sket~~ttp~~p~~~ledfYMTNSISRASk~MAQCsaallKk 708 (708)
T KOG2282|consen 661 PQAKPLSKETGSTTPDDPLLELEDFYMTNSISRASKTMAQCSKAVLKK 708 (708)
T ss_pred cccchhhhhhcCCCCCcchHHHHHHhhhhhhhhhhHHHHHHHHHHhcC
Confidence 433222233445567776 6789999999999999999999998775
No 3
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.9e-101 Score=787.51 Aligned_cols=471 Identities=25% Similarity=0.328 Sum_probs=432.4
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcC---cccccccccccccCcccccccccccc----------------
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMT---SELSGNVIDICPVGALTSKPFAFKAR---------------- 61 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~---~~~~Gn~idvCPvGAlt~k~~~~~aR---------------- 61 (523)
||||.|+|++|..+|++.+||+++.|..+.+.++. |..||+|+.||||+||++|++.++++
T Consensus 156 RCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag~~t~~~~~~~~~mid~ 235 (978)
T COG3383 156 RCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEKSMLGEAGYLTGINEDTLEPMIDL 235 (978)
T ss_pred HHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhhhhhhhccccccccccchhhhhhhhh
Confidence 89999999999999999999999999999997774 67899999999999999999999998
Q ss_pred -----ccc-----------------ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-
Q 009859 62 -----NWE-----------------LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK- 118 (523)
Q Consensus 62 -----~We-----------------l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~- 118 (523)
||. ++++.|+|++|++||.+.+++|+++|+||+|.+++|+|.+.+|.||||++++++
T Consensus 236 ~k~~eP~~~~~~ais~~e~~mr~~rikktkTvC~yCGvGCsf~vwtkgreilkv~p~~e~paN~~~tCVKGkFgwdfvns 315 (978)
T COG3383 236 VKKVEPEYGPIFAISEIEAAMRETRIKKTKTVCTYCGVGCSFEVWTKGREILKVQPDPEGPANRISTCVKGKFGWDFVNS 315 (978)
T ss_pred hhccCCCcccchhhhhhhhhhhhhhhcccceeccccCCceeEEEEecCceEEEeccCCCCCCCccceeeeceecccccCC
Confidence 998 889999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCC----CCEEEEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCcc
Q 009859 119 SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKP----EEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGA 193 (523)
Q Consensus 119 ~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~----~~i~~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~ 193 (523)
++||++||||. +|.|+++||||||+.+|++|++++. +++++++|+..++|+.|++|+|++ .+|++|+|.+++.|
T Consensus 316 ~dRit~PlIR~-~~~f~evsWeEAl~~vA~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v~gtNNVDncsR~C 394 (978)
T COG3383 316 RDRITKPLIRE-GDRFREVSWEEALDLVASRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQVFGTNNVDNCSRYC 394 (978)
T ss_pred hhHhccccccc-CCceeeeeHHHHHHHHHHHHHHHHHHhCccceeeeccCCCCcHHHHHHHHHHHHHhccCCcccchhhc
Confidence 89999999999 8899999999999999999997764 899999999999999999999998 68999999999987
Q ss_pred chh------hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc-----
Q 009859 194 QSN------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH----- 262 (523)
Q Consensus 194 ~~~------~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~----- 262 (523)
..+ ..+|..+.. .+++|++++|+||++|.||.++||++..|+++|.|.+|.||+|+|||....+..++
T Consensus 395 qsPa~~gL~rTvG~g~ds-gsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~p 473 (978)
T COG3383 395 QSPATDGLFRTVGSGADS-GSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHP 473 (978)
T ss_pred cCcccccchheeeccCCC-CCHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCC
Confidence 543 334443333 38999999999999999999999999999999987799999999999998887765
Q ss_pred -cCCCHHHHHHHH---------------------------------------cC-----cHHHHHHHhcCCCcEEEEcCC
Q 009859 263 -LGTGPKTLLEIA---------------------------------------EG-----RHPFFSAISNAKNPVIIVGAG 297 (523)
Q Consensus 263 -~g~~~~~l~~~~---------------------------------------~g-----i~~~a~~l~~a~~~~ii~g~~ 297 (523)
+|+|..++.+++ +| ++.+|++|+++++..|+||+|
T Consensus 474 kpGtd~a~l~AvakyiideGl~D~~Fi~er~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mG 553 (978)
T COG3383 474 KPGTDLAWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMG 553 (978)
T ss_pred CCCccHHHHHHHHHHHHhCCcchHHHHHhhcccHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEcc
Confidence 588876542221 23 578999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCcc---------------------------
Q 009859 298 LFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS--------------------------- 350 (523)
Q Consensus 298 ~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~--------------------------- 350 (523)
+.||..|.....+|.+|+.+|||+|++|.|.++|+++.|.+|+.|||.+|...
T Consensus 554 vTqh~~GsdTs~aisNLll~TGN~Grpg~G~~PLRGhNNVQGa~DmGslP~~LPGyq~isdd~~R~kFE~~wGv~i~~eP 633 (978)
T COG3383 554 VTQHSGGSDTSTAISNLLLLTGNYGRPGAGAYPLRGHNNVQGACDMGSLPDVLPGYQPISDDAVRAKFEEAWGVKIPREP 633 (978)
T ss_pred ccccccCccHHHHHHHHHHHhcccCCCCCCcCcccccCccccccccccCcccCCCccccccHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999876531
Q ss_pred ----------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCC
Q 009859 351 ----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE 412 (523)
Q Consensus 351 ----------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~e 412 (523)
..+++++++|++|.|++. ..+|.+++|+||||.|+|+||+|||||||+++++||+|||+|.|
T Consensus 634 Gl~~~~Mlea~~~G~~~amYv~GEd~~~sd~dt~~v~~aL~~ldflVVqD~FLteTA~yAdVvLPas~slEKdGTFtNtE 713 (978)
T COG3383 634 GLDNPEMLEAIEEGKLKAMYVVGEDPLLSDPDTNHVRAALEALDFLVVQDLFLTETANYADVVLPASASLEKDGTFTNTE 713 (978)
T ss_pred CCCcHHHHHHHhcCceeEEEEecccceecCCChHHHHHHHhhcceEEeehhhhhcccccceEEeecCccccccCceechH
Confidence 146899999999999863 24688999999999999999999999999999999999999999
Q ss_pred CceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCC--CccccCC
Q 009859 413 GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLL--HVDEREP 473 (523)
Q Consensus 413 g~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~--~~~~~~~ 473 (523)
+|+|+.+++++|+|++|+||+|++++|++||.++.|.++.||++|++++.|.|+ +|+.|+.
T Consensus 714 RRiQrlykvleP~gdsrpDW~Iiq~vA~~lG~~wnY~hpSeIm~EiA~l~P~fAgvsye~Leg 776 (978)
T COG3383 714 RRIQRLYKVLEPLGDSRPDWEIIQEVANALGAGWNYSHPSEIMDEIAALTPSFAGVSYERLEG 776 (978)
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCcccccccHHHhcc
Confidence 999999999999999999999999999999999999999999999999999986 6776663
No 4
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=100.00 E-value=2e-92 Score=767.69 Aligned_cols=436 Identities=48% Similarity=0.765 Sum_probs=396.2
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
||||||+||+|..+|++.+||.+++|+++.+.+++|++||||||||||||||+|+|+|++|||+++.++|+|++|+.||+
T Consensus 149 rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~ 228 (603)
T TIGR01973 149 RCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDSVGCN 228 (603)
T ss_pred HHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccccccccccccceeccccCCCcCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEE
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIV 159 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~ 159 (523)
|.++++||+|+||+|++++|+|+|++|+||||+++.+| |+||++||+|.++|+|++|||||||++|+++|+++ ++++
T Consensus 229 i~v~v~dg~i~rv~~~~~~p~n~g~lC~kG~~~~~~~~~~dRl~~Pl~R~~~g~~~~isWdeAl~~ia~kL~~i--~~va 306 (603)
T TIGR01973 229 IRVDERNGEIMRILPRENDEINEEWLCDKGRFGYDGLNRQDRLTKPLLRNQEGNLLEVSWAEALAIAAEKLKAS--SRIG 306 (603)
T ss_pred eeEEeECCEEEEEECCCCCCCCccccCHhHhhhhhhhcCccccCCceEecCCCceEEcCHHHHHHHHHHHHhcc--CcEE
Confidence 99999999999999999999999999999999999997 89999999994389999999999999999999998 6899
Q ss_pred EEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchh-hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHH
Q 009859 160 GIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN-ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRK 238 (523)
Q Consensus 160 ~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~ 238 (523)
+++|+..++|+.+++++|++.+|++|+++..+.+... ......+.+|.++.|+++||+||+||+||.+++|++..++++
T Consensus 307 ~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~il~~G~N~~~s~p~~~~~i~~ 386 (603)
T TIGR01973 307 GIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLVLLVGADLRQEAPLLNLRLRK 386 (603)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEEEEEccCchhhhHHHHHHHHH
Confidence 9999888899999999999999999988776543211 111122345568999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHHcCcH-HHHHHHhcCCCcEEEEcCCcccccCHHHHHHHH
Q 009859 239 TVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIAEGRH-PFFSAISNAKNPVIIVGAGLFERKDKDAIFSTV 311 (523)
Q Consensus 239 a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~~gi~-~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~ 311 (523)
+++++|+||++|||+.+.++..++ ||+|.+.+..++.|.. .+|++|+++++++|++|.++.++.++.++.+++
T Consensus 387 a~~~ggaklividpr~s~ta~~Ad~~l~i~Pgtd~all~~l~~~~~~~~A~~l~~ak~~~ii~g~g~~~~~~g~~~~~a~ 466 (603)
T TIGR01973 387 AVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLSPKKLDDIASGAHSDIAAALKAAKKPLIIVGDSAYSHLDGAALISAA 466 (603)
T ss_pred HHhcCCcEEEEECCccccchhhhccceeecCCccHHHHHHHHhcccHHHHHHHhhCCCcEEEEechhhcCCCHHHHHHHH
Confidence 887556999999999999998875 7999999888876644 499999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCcc---ccccCccEEEEEcCCCCCC-------CCCCCCceEEEE
Q 009859 312 EAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS---NSIESAKFVYLMGADDVDL-------EKLPNDAFVVYQ 381 (523)
Q Consensus 312 ~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~---~~~~~i~~l~~~g~n~~~~-------~~l~~~~fvV~~ 381 (523)
.+|+.++|+++++++|+++++..+|.+|+.++|..|... ...+++|++|++|.||+.. +.+++.+|+|++
T Consensus 467 ~~L~~l~G~~~~~g~g~~~~~~~~n~~g~~~~g~~~~~l~~~i~~g~ikal~v~g~Np~~~~~~~~~~~~~~~~~f~Vv~ 546 (603)
T TIGR01973 467 ANIAKVIKVRRKEWNGLNILSSGANSVGLLDLGGESTGLDAALNLGAADALFLLGADLERALDKTARDALSKADAFVIYQ 546 (603)
T ss_pred HHHHHHhCCccCCCceEEEeccchHHHHHHHhcCCCccchhhhhcCCCCEEEEeccCcccCChHHHHHHHHhcCCEEEEe
Confidence 999999999999899999998889999999988766321 1458899999999999641 234678999999
Q ss_pred cccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHH
Q 009859 382 GHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRAL 438 (523)
Q Consensus 382 d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~L 438 (523)
|+|+|+|+++||||||+++|+|++|+|+|++|++|+++|+++|+||+|+||+||++|
T Consensus 547 d~f~teTa~~ADvVLPaa~~~Ek~G~~~n~~g~~~~~~~~v~p~ge~r~d~~il~~L 603 (603)
T TIGR01973 547 GHHGTETAEKADVILPGAAFTEKSGTYVNLEGRAQRFEQAVKPPGEAREDWRILRAL 603 (603)
T ss_pred cCcCCccHhhCCEEEcCCCccCCCceEECCCCcCEeeccccCCCccchHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999875
No 5
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=2.8e-91 Score=779.77 Aligned_cols=500 Identities=31% Similarity=0.485 Sum_probs=420.3
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
||||||+||+|..+|++.+||.+++|+++.+.+++|++||||||||||||||+|+|+|++|||+++.++|+|++|+.||+
T Consensus 151 rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~ 230 (776)
T PRK09129 151 RCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGSN 230 (776)
T ss_pred HHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCccccccccccccCCCcccccCCccCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcC----C
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----P 155 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~----~ 155 (523)
|.++++||+|+||+|++++++|+|++|+|||++++.+| |+||++||+|. +|+|++|||||||++|+++|++++ +
T Consensus 231 i~v~v~~g~i~rv~g~~~~p~n~G~lC~kG~~~~~~l~~pdRl~~Pl~R~-~g~~~~iSWdeAl~~ia~~L~~i~~~~G~ 309 (776)
T PRK09129 231 LVVHVKNNRVMRVVPRENEAVNECWISDRDRFSYEGLNSEDRLTKPMIKQ-GGQWKEVDWETALEYVAEGLKGIIEDHGA 309 (776)
T ss_pred eEEEEECCEEEEeecCCCCCCCccccCccccccccccccccccCCCeEec-CCceEEcCHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999997 99999999998 899999999999999999999875 3
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccch---hhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhH
Q 009859 156 EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQS---NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMV 232 (523)
Q Consensus 156 ~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~ 232 (523)
++++++.|+..++|+.+++++|++.+|++|+++....+.. ...++. ..++.++.|+++||+||+||+||.+++|++
T Consensus 310 ~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~~~~~~g~-~~~~~~~~Di~~ad~Il~~G~N~~~~~p~~ 388 (776)
T PRK09129 310 DQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDFRDDAAAPGA-PWLGMPIAELSNLDAVLVVGSNLRKEHPLL 388 (776)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCccccchhhhhcc-cccCCCHHHHHhCCEEEEEecCcchhcHHH
Confidence 7899998988889999999999999999998765544321 111221 234568899999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCC------HHH-------------------HHHHH--cCcHHHHHHHh
Q 009859 233 NARIRKTVRANNAKVGYIGPATDLNYDHQHLGTG------PKT-------------------LLEIA--EGRHPFFSAIS 285 (523)
Q Consensus 233 ~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~------~~~-------------------l~~~~--~gi~~~a~~l~ 285 (523)
..+++++. ++|+||++|||+.+.+.....++++ ... +++++ +.|+++|++|+
T Consensus 389 ~~~i~~a~-~~G~klividpr~t~~~~~~~~~~~~~p~~~~~~la~l~~~i~~~~~~~~~e~~~~it~~~~I~~~A~~l~ 467 (776)
T PRK09129 389 AARLRQAA-KNGAKLSAINPVDDDFLFPVAQRIIVAPSAWADALAGVAAAVAAAKGVALPEALAKVLAAAAARAIAQSLA 467 (776)
T ss_pred HHHHHHHH-HCCCeEEEecCCccccccccccCccCChHHHHHHHHHHHHHHHHhhcccChHHhhccCcHHHHHHHHHHHh
Confidence 99999986 4899999999999876644444432 111 11111 12689999999
Q ss_pred cCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCcc------ccccCccEE
Q 009859 286 NAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS------NSIESAKFV 359 (523)
Q Consensus 286 ~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~------~~~~~i~~l 359 (523)
++++++|++|.++.++.++.++.+++..|+.++|+ +++.+....|.+|+.++|..|... ...+++|++
T Consensus 468 ~a~~~~i~~G~g~~~~~~g~~~~~~i~~L~~ltG~------~~~~l~~~~n~~g~~~~g~~p~~~g~~~~~il~g~ikal 541 (776)
T PRK09129 468 NGERAAILLGNLAVNHPQAATLRALAQWIAKLTGA------TLGFLTEAANSVGAHLAGALPGKGGLNAAAMLAQPRKAY 541 (776)
T ss_pred cCCCeEEEECcccccCCCHHHHHHHHHHHHHHHCC------CEEccCcchHHHHHHHhCCCCCCcccCHHHHhCCCcCEE
Confidence 99999999999999999999999999999999885 234566678889999988877421 145799999
Q ss_pred EEEcCCCCC--------CCCCCCCceEEEEcccCCccc-CcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCcc
Q 009859 360 YLMGADDVD--------LEKLPNDAFVVYQGHHGDHGV-YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARD 430 (523)
Q Consensus 360 ~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta-~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~ 430 (523)
|++|+||+. .++|++++|+|++|+|+|+|+ ++||||||+++|+|++|+++|.+|++|+++|+++|+||+|+
T Consensus 542 ~v~g~Np~~s~p~~~~~~~aL~kl~f~Vv~d~f~teTa~~~ADvVLPaa~~~E~~g~~~~~~g~~~~~~~~v~P~gear~ 621 (776)
T PRK09129 542 LLLNVEPELDCADPAQARAALNQAEFVVALSAFASKATLDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVRPLGEARP 621 (776)
T ss_pred EEeCCCccccccCHHHHHHHHhcCCeEEEEeeecCcchhhcCCEEEcCCCcccCCceEECCCCceEEeccccCCCccchh
Confidence 999999964 146889999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCCCCCccccCCCC-CCCCCCcccccccCCCCcc-cccccccCCchhh
Q 009859 431 DWKIIRALSEVAGMR-LPYDTIGGIRSRIRTVAPNLLHVDEREPAT-LGPSLKPEIKSEMDLTPFG-SAVENFYMTDSIT 507 (523)
Q Consensus 431 d~~Il~~La~~lg~~-~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~y~~d~~~ 507 (523)
||+||.+||++||.+ ++|.+.+++++++.+..+.+ +.+.... ........ .+..|. ..-..+|.+++.+
T Consensus 622 d~~Il~~LA~~lG~~~~~~~~~~~i~~~~~~~~~~~---~~l~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~~~~~~ 693 (776)
T PRK09129 622 AWKVLRVLGNLLGLPGFDYESSEEVRAEALGAGALA---SRLSNATSAARAAPAA-----ASGGLERVADVPIYRTDALV 693 (776)
T ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCch---hhcccccccCCCCCCC-----CCCceeeechhhhccCCchh
Confidence 999999999999985 78899999999998776532 2222211 00000000 011111 1113478889999
Q ss_pred hccHHHHHHH
Q 009859 508 RASKTMAQCS 517 (523)
Q Consensus 508 r~s~~~~~~~ 517 (523)
+++..+|.+.
T Consensus 694 ~~~~~l~~~~ 703 (776)
T PRK09129 694 RRAEPLQLTA 703 (776)
T ss_pred ccChhhhhcc
Confidence 9998888764
No 6
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=8.7e-92 Score=779.88 Aligned_cols=498 Identities=26% Similarity=0.381 Sum_probs=413.6
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
||||||+||+|..+|++.+||.+++|+++.+++++|++||||||||||||||+|+|+|++||||+++++|+|++|+.||+
T Consensus 157 rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~~~~~~r~w~l~~~~SvC~~C~~GC~ 236 (797)
T PRK07860 157 RCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCASGCA 236 (797)
T ss_pred HHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccccccccCcccceecceeCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEE
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIV 159 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~ 159 (523)
|.++++||+|+|+.+++++++|+||+|+||||+++.++ ++||++||+|.++|+|++|||||||++|+++|+++++ +++
T Consensus 237 l~v~v~dg~ivrv~~~~~~~~N~G~lC~KGr~~~~~~~~~dRL~~PliR~~~g~f~~iSWdEAld~ia~kL~~i~~-~ia 315 (797)
T PRK07860 237 QRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDRITTPLVRDEDGELEPASWSEALAVAARGLAAARG-RVG 315 (797)
T ss_pred eEEEEcCCEEEEEecCCCCCCCCCccChhhhhhhhhhccccccCCceEEcCCCceEEcCHHHHHHHHHHHHHhhhc-cEE
Confidence 99999999999999988999999999999999999986 9999999999658999999999999999999999864 899
Q ss_pred EEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCccchh-hh----hhcCcccCCCccccccCCEEEEEcCCCCcchhhHH
Q 009859 160 GIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSN-AD----LRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVN 233 (523)
Q Consensus 160 ~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~ 233 (523)
++.|+..++|++|++++|++ .+|++|+++..+.+... .. .......+.++.||++||+||+||+||.+++|+++
T Consensus 316 ~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~~r~~~~~~~~~~~~~~~g~~~~~~~~Die~ad~ill~G~N~~~~~P~~~ 395 (797)
T PRK07860 316 VLVGGRLTVEDAYAYAKFARVALGTNDIDFRARPHSAEEADFLAARVAGRGLGVTYADLEKAPAVLLVGFEPEEESPIVF 395 (797)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCCccccccccccchHHHHHHhhccCCCCCCCHHHHHhCCEEEEEeCChhhhhHHHH
Confidence 99999989999999999998 79999998765542111 11 11111224578999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCCCcc-hh------ccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHHH
Q 009859 234 ARIRKTVRANNAKVGYIGPATDLNYD-HQ------HLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDA 306 (523)
Q Consensus 234 ~~lr~a~~~~g~klv~idp~~~~t~~-~a------~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~ 306 (523)
.|++++++++|+||++|||+.+.+++ .+ .||+|.+.+..++..+.++++.|+++ ++++++|.++.++.+.
T Consensus 396 ~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD~all~al~~~i~~~a~~l~~~-~~~i~~g~~v~~~~~~-- 472 (797)
T PRK07860 396 LRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGEAAALDALATGAPDVAELLRTP-GAVILVGERLATVPGA-- 472 (797)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCCCcHHHHHHHHHHHHHHHHHHHccC-CCEEEEchhhccChhH--
Confidence 99999877799999999999988643 33 37999998888876666789999875 5889999999887653
Q ss_pred HHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCc-------------------------------c-----
Q 009859 307 IFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPES-------------------------------S----- 350 (523)
Q Consensus 307 ~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~-------------------------------~----- 350 (523)
+.++.+|+.++|+. +..+....|.+|+.++|.+|.. .
T Consensus 473 -~~a~~~la~~~g~~------~~~~~~~~n~~G~~~~G~~~~~lpG~~~~~~~~~~~~~~~~w~~~~~p~~~G~~~~ei~ 545 (797)
T PRK07860 473 -LSAAARLADATGAR------LAWVPRRAGERGALEAGALPTLLPGGRPVADPAARAEVAAAWGVDELPAAPGRDTAGIL 545 (797)
T ss_pred -HHHHHHHHHHhCCc------cccccchhhhhhhHhhcCCCCcCccccccCCHHHHHHHHHHhCCCcCCCCCCcCHHHHH
Confidence 66788888888752 2234455677888877764421 0
Q ss_pred --ccccCccEEEEEcCCCCCC-------CCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCc
Q 009859 351 --NSIESAKFVYLMGADDVDL-------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPA 421 (523)
Q Consensus 351 --~~~~~i~~l~~~g~n~~~~-------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~ 421 (523)
...++||+||++|.||.+. ++|++++|+|++|+|+|+|+++||||||+++|+|++|||+|.|||+|+++|+
T Consensus 546 ~~~~~G~Ikal~v~g~np~s~p~~~~v~~aL~~ldflVv~D~f~teTa~~ADVVLPaa~~~Ek~Gt~tN~e~rvq~~~ka 625 (797)
T PRK07860 546 AAAAAGELGALLVGGVEPADLPDPAAALAALDAAGFVVSLELRHSAVTERADVVLPVAPVAEKAGTFLNWEGRLRPFEAA 625 (797)
T ss_pred HHHhcCCCcEEEEeCcChhhCCCHHHHHHHHhcCCeEEEecccCchhHhhCCEEeecCcccccCCceEccCCceEeeccC
Confidence 0357899999999999642 3588999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCCCCCCcccccccCCCCcc-cccccc
Q 009859 422 VPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFG-SAVENF 500 (523)
Q Consensus 422 v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 500 (523)
++| +++|+||+||.+||++||.+++|.+++++++++.+..|.... ..+... .... ........+|. ....-+
T Consensus 626 v~p-~~ar~Dw~Il~~La~~lg~~~~~~~~~~i~~ei~~~~~~~g~---~~p~~~--~~~~-~~~~~~~~~~~~~~~~~~ 698 (797)
T PRK07860 626 LRT-TGALSDLRVLDALADEMGVDLGLPTVAAARAELARLGAWDGA---RAAAPA--VPAA-APPQPGAGEAVLATWRML 698 (797)
T ss_pred CCC-CCCchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCccccc---cCCCCC--CCCC-CCCCCCCCcEEecccceE
Confidence 996 689999999999999999999999999999999988873310 011110 0000 00011111222 111237
Q ss_pred cCCchhhhccHHHHHH
Q 009859 501 YMTDSITRASKTMAQC 516 (523)
Q Consensus 501 y~~d~~~r~s~~~~~~ 516 (523)
|.++.++|+|+.|++.
T Consensus 699 ~~tg~~~~~~~~L~~~ 714 (797)
T PRK07860 699 LDDGRLQDGEPHLAGT 714 (797)
T ss_pred EecCchhccChhhhhc
Confidence 7889999999999874
No 7
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=8.2e-87 Score=748.74 Aligned_cols=454 Identities=25% Similarity=0.361 Sum_probs=383.1
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccc-cccccceeeeeeeccCCCCC
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFK-ARNWELKGTETIDVTDAVGS 79 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~-aR~Wel~~~~siC~~C~~gC 79 (523)
||||||+||+|..+||++|||.+++|+++.+..++|+|||||||||||||||+|+|+|+ +|+|+++.++|+|++|+.||
T Consensus 156 rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~~~~~~~r~w~l~~~~s~C~~C~~gC 235 (847)
T PRK08166 156 RCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHCSVGC 235 (847)
T ss_pred HHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccccccccCCCceeeEEEeeCCCCcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCE
Q 009859 80 NIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEI 158 (523)
Q Consensus 80 ~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i 158 (523)
+|.+++++|+|+||+|++++++|++|+|+||||++++++ ++||++||+|. +|+|++|||||||+.|+++|+++++ .
T Consensus 236 ~i~v~~~~g~i~rv~~~~~~~~n~g~lC~kGr~~~~~~~~~dRl~~Pl~R~-~g~~~~isWdeAl~~ia~~l~~~~~--~ 312 (847)
T PRK08166 236 NISPGERYGELRRIENRYNGAVNGYFLCDRGRFGYGYVNLKDRPRQPLQRR-GDDFITLNADQALQGAADILRQAKK--V 312 (847)
T ss_pred CeEEEeeCCEEEEEECCCCCCccCCcCCHHHHhhhhhccccccCCcceeec-CCceeEeCHHHHHHHHHHHHHhhcc--e
Confidence 999999999999999999999999999999999999997 89999999999 7899999999999999999999853 3
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc----cch--hhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhH
Q 009859 159 VGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG----AQS--NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMV 232 (523)
Q Consensus 159 ~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~ 232 (523)
.+++++..++|+++++++| +|++|++...+. |.. ...++.....+.++.|+++||+||+||+|+.+++|++
T Consensus 313 ~G~~s~~~t~e~~~~l~k~---~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ilv~G~N~~~~~p~~ 389 (847)
T PRK08166 313 IGIGSPRASLESNFALREL---VGAENFYTGIAAGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAARV 389 (847)
T ss_pred EEEECCCcchHHHHHHHHH---hCCCCcccccChHHhhhhhHHHHHhhcCCCCCCCHHHHHhCCEEEEEeCChHHhhHHH
Confidence 3477888889999988887 699988654432 111 1123222234457899999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCC--------------------------CCcchhc------cCCCHHHHHHHH------
Q 009859 233 NARIRKTVRANNAKVGYIGPATD--------------------------LNYDHQH------LGTGPKTLLEIA------ 274 (523)
Q Consensus 233 ~~~lr~a~~~~g~klv~idp~~~--------------------------~t~~~a~------~g~~~~~l~~~~------ 274 (523)
+.+++++++ +|+|+++|||+.+ .++..++ +|++...+..++
T Consensus 390 ~~~i~~a~~-~gaklividpr~~~~~~~~~~~~g~~~~~~l~vv~~~~t~~a~~Ad~~l~~~pg~~~~l~~al~~~~~~~ 468 (847)
T PRK08166 390 ALAVRQAVK-GKAREMAAAQKVADWQIAAVRNIGQRAKSPLFITNVDETRLDDIAAWTYRAPPEDQARLGFAIAHALDNS 468 (847)
T ss_pred HHHHHHHHH-cCCceEeeccccccchhhhhhhcccccCcceEEecCchhhHHHHHhhhhcCCchhHHHHHHHHHhhhhhh
Confidence 999999885 8999999998732 2222222 454443332221
Q ss_pred ------------cCcHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHh
Q 009859 275 ------------EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALD 342 (523)
Q Consensus 275 ------------~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~ 342 (523)
+.++++|++|+++++++|++|.+...+ .....+.+|+.+++..+++ +|+.++.+.+|.+|+.+
T Consensus 469 ~~~~~~~~~~~~~~i~~~A~~la~a~~~~I~~G~g~~~~----~~~~~~~~l~~~l~~~g~~-gG~~~l~~~~n~~G~~~ 543 (847)
T PRK08166 469 APAVDGLDPELQAKADVIAQALAGAKKPLIISGTSAGSP----AIIEAAANVAKALKGRGAD-VGITLVAPEANSMGLAL 543 (847)
T ss_pred cchhccCccchhHHHHHHHHHHhcCCCcEEEEeCcccCh----HHHHHHHHHHHHHhccCCC-ceEEEeccchhHHHHHH
Confidence 137889999999999999999987532 2344455565566555654 46888888999999988
Q ss_pred cCCCCCcc----ccccCccEEEEEcCCCCCC-------CCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecC
Q 009859 343 LGLVPESS----NSIESAKFVYLMGADDVDL-------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENT 411 (523)
Q Consensus 343 ~g~~p~~~----~~~~~i~~l~~~g~n~~~~-------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~ 411 (523)
+|..+... ...++||++|++|+||+.. ++|.+++|+|++|+|+|+|+++||||||+++|+|++|+|+|.
T Consensus 544 ~g~~~~~~l~~~i~~g~ikal~v~g~np~~~~~~~~~~~aL~~~dflVv~d~f~teTA~~ADvVLPaa~~~E~~Gt~~n~ 623 (847)
T PRK08166 544 LGGGSLEEALEELESGRADAVIVLENDLYRHAPAARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTLVNN 623 (847)
T ss_pred hcCCCHHHHHHHHHcCCCCEEEEeCCCcccCcCHHHHHHHHhcCCEEEEEccccCCccccCCEEeccCcccccCceEECc
Confidence 87543221 1468899999999998642 357889999999999999999999999999999999999999
Q ss_pred CCceEeecCccCCCC-----CCccHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCCCC
Q 009859 412 EGCTQQTLPAVPTVG-----DARDDWKIIRALSEVAGMR-LPYDTIGGIRSRIRTVAPNLL 466 (523)
Q Consensus 412 eg~~q~~~~~v~p~g-----e~r~d~~Il~~La~~lg~~-~~~~~~~~i~~~~~~~~p~~~ 466 (523)
+|++|+++++++|+| |+|+||+||++|+++||.. ++|.+.+++++++.+..|.+.
T Consensus 624 egr~q~~~~~v~p~g~~~~~e~r~dw~I~~~La~~lg~~~~~~~~~~ei~~~~~~~~~~~~ 684 (847)
T PRK08166 624 EGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDALAAAIPQLA 684 (847)
T ss_pred CCcceeecceecCCCccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCcccc
Confidence 999999999999999 9999999999999999974 789999999999987767554
No 8
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=100.00 E-value=4.4e-77 Score=631.25 Aligned_cols=516 Identities=38% Similarity=0.628 Sum_probs=425.4
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
||||||+||+|.++||+++||.+++|+||.+++++|||||||||+|||||||+|+|+|.+|+||+++++|+|.||++||+
T Consensus 151 RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~~ 230 (693)
T COG1034 151 RCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGCN 230 (693)
T ss_pred hhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChHHhhhccchhccCceeeccCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEE
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVG 160 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~ 160 (523)
|.+++|.++++|++|+.|..+|+.|+||||||+|++++.+|+.+|++|. +|+|.+++|.+|...++..+..+++++++.
T Consensus 231 i~~d~r~~ev~ri~~r~n~~vNe~~~~d~~RF~~d~~~~~~~~~p~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 309 (693)
T COG1034 231 IRVDERYGEVRRILPRYNEVVNEEWLCDKGRFAYDGLNLQRLDRPKIRV-GGRLVEASWLEANEAIAQALALIKPEKVGA 309 (693)
T ss_pred eeecccccchhhhcccchhHHHHHHhcccccccccccccchhcccchhc-CCeeeecChHHHHHHHHHHHhhhcccccce
Confidence 9999999999999999999999999999999999999966699999999 779999999999999999999888788989
Q ss_pred EeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchh-hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHH
Q 009859 161 IAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN-ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKT 239 (523)
Q Consensus 161 ~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a 239 (523)
++++..++|+++++++|+..+|+.++++........ ...+..+.++.++.+++++|.++++|.|+++++|++..|+|++
T Consensus 310 i~~~~~~~E~~~alk~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ie~~d~~l~ig~~~~~~~~~l~~~ir~~ 389 (693)
T COG1034 310 IASPRASVEELFALKELAGELGSSNIDHRQEDARLDPKVARAGYLYNPTIAEIESADAVLVIGANLRQEAPVLALRIRKA 389 (693)
T ss_pred eechhhhHHHHHHHHHHHHHhccCCccccchhhhcchhhhcccccccccHhHHHhCchhhccCCCccccchhHHHHHHHH
Confidence 999999999999999999999999998862221111 2233445666789999999999999999999999999999999
Q ss_pred HHhCCCeEEEEcCCCCCCcch---hccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHH
Q 009859 240 VRANNAKVGYIGPATDLNYDH---QHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAK 316 (523)
Q Consensus 240 ~~~~g~klv~idp~~~~t~~~---a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~ 316 (523)
.+..+..+.++.......+.. ...+.....+.++..+.+.....+..+++..++.|.+...++.+..+..+...++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~ 469 (693)
T COG1034 390 VKGKGLPVAVIGGVAEWLYALLLSILLGAGIALLDELALGAEAATAAVKKAERELIEKGKGALAGAKKAAILALAEKLAD 469 (693)
T ss_pred hhccCcceeeccchhHHHHHHHhhhhccCCceeeehhhcchhHHHHHHHhccccceeecceeeccCCcceeeehhHHhhh
Confidence 987888888888765544433 12344444444444445555677888889999999888888888777777777776
Q ss_pred HcCCCCCCCCceeecchhhHHhhHHhcCCCCCccc-------cccCccEEEEEcCCCCCCCCCCCCceEEEEcccCCccc
Q 009859 317 KGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGV 389 (523)
Q Consensus 317 ~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~-------~~~~i~~l~~~g~n~~~~~~l~~~~fvV~~d~~~t~ta 389 (523)
.++..-..|++ ..++..++..+...++.+|.... .+...+++++++.++....+..+..|||+++++.+.++
T Consensus 470 ~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 548 (693)
T COG1034 470 ELGAAEARWNG-VVLHEAASRVNALGLGFLPGLSGEDAALMLGPADANALLLLGIDEEADEADEHAKFVVYSDHHGDAGA 548 (693)
T ss_pred hhhhhhhcccc-chhhHHHHhhccccccccccccchhHHhhccchhhceeeeeccchhhhhhccCCCEEEEecccccccc
Confidence 66554434555 55666677777777776654321 33567888999888543334445789999999999999
Q ss_pred CcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCcc
Q 009859 390 YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVD 469 (523)
Q Consensus 390 ~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~~~~ 469 (523)
..||||||+++|.|++|||+|.|||+|.+++++.|+++.++||+|++.|+..||..++|++.+.++.++....|.+...+
T Consensus 549 ~~a~vilp~a~~~e~~Gt~vN~eGR~q~~~~a~~~~~~~~~~w~~l~~L~~~lg~~i~~~~l~~~~~~~~~~~~~~~~~~ 628 (693)
T COG1034 549 EVADVVLPAASFTEKSGTYVNLEGRVQRFNQALRPGGDEREDWRVLHALASELGLKLDFDQLDAVRAALAAAHPGFALID 628 (693)
T ss_pred chhheeccccccccccceEEeeccccccccccccCcccchHHHHHHHHhHHHhCCCCCCchHHHHHHHHHHhccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred ccCCCCCCCCCCc----ccccccCCCCcccccccccCCchhhhccHHHHHHHHHH
Q 009859 470 EREPATLGPSLKP----EIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAML 520 (523)
Q Consensus 470 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~y~~d~~~r~s~~~~~~~~~~ 520 (523)
+.....+...... .........++.+ .. ||.++++.|+|+.|++|..+.
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~~ 681 (693)
T COG1034 629 SAAKGEREPPAGEGILANRANISVAEPLQP-QD-FYLAMPGARNSPQAAKKLQLE 681 (693)
T ss_pred hhhccccCCccccchhcccccccccccCCc-cc-hhhhccccccCHHHHHhhhhh
Confidence 4332222110000 0001111122221 12 999999999999999999875
No 9
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=100.00 E-value=5.1e-74 Score=591.67 Aligned_cols=373 Identities=59% Similarity=0.965 Sum_probs=345.1
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAE 148 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~ 148 (523)
+|||+||++||+|.+++|+|+|+||+|++++++|++|+|+||||++++++++||++||+|. +|+|++||||||++.+++
T Consensus 1 ~si~~~~~~GC~i~v~~~~g~i~ri~~~~~~~~n~g~lC~kgr~~~~~~~~~Rl~~Plir~-~g~~~~isWdeAl~~ia~ 79 (375)
T cd02773 1 ESIDVLDAVGSNIRVDTRGGEVMRILPRLNEDINEEWISDKTRFAYDGLKRQRLDKPYIRK-NGKLKPATWEEALAAIAK 79 (375)
T ss_pred CCcCCCCCCCCceEEEEeCCEEEEEeCCCCCCCCCCeecCcccccccccCccccCCCcEee-CCcEeEcCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998899999999998 789999999999999999
Q ss_pred HHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcc
Q 009859 149 VMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVE 228 (523)
Q Consensus 149 ~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~ 228 (523)
+|++++++++++++|+..++|+.+++++|++.+|++|+++..+.|.....++..+.++.++.|+++||+||+||+||.++
T Consensus 80 ~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~N~~~~ 159 (375)
T cd02773 80 ALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTIAGIEEADAVLLVGTNPRFE 159 (375)
T ss_pred HHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCHHHHhhCCEEEEEcCCcchh
Confidence 99999888999999998999999999999999999998877766655444554455566899999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHHHHH
Q 009859 229 AAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIF 308 (523)
Q Consensus 229 ~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~ 308 (523)
+|+++.|+|++++++|+||++|||+.+.|+..+++|+|.+.+..+++|..++|+.|+++++++|++|++..++.++...+
T Consensus 160 ~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~g~d~~~l~~l~~~~~~~a~~l~~a~~~~ii~g~g~~~~~~~~~~~ 239 (375)
T cd02773 160 APVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDIASGKHPFSKALKDAKKPMIIVGSGALARKDGAAIL 239 (375)
T ss_pred chHHHHHHHHHHHcCCCEEEEEcCccccchhhccCCCcHHHHHHHHHhHHHHHHHHhcCCCcEEEecchhhccccHHHHH
Confidence 99999999998776799999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCccc--cccCccEEEEEcCCCCCCCCCCCCceEEEEcccCC
Q 009859 309 STVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN--SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGD 386 (523)
Q Consensus 309 ~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~--~~~~i~~l~~~g~n~~~~~~l~~~~fvV~~d~~~t 386 (523)
+++..|+.++|++++++.|++.+....|.+|+.++|..|.... ..+++|++|++|.||+.....++.+|+|++|++++
T Consensus 240 ~~i~~l~~~~g~~~~~~~g~~~~~~~~n~~g~~~~g~~~~~~~~~~~g~i~~l~v~g~np~~~~~~~~~~~~v~~d~~~~ 319 (375)
T cd02773 240 AAVAKLAKKNGVVREGWNGFNVLHRAASRVGALDLGFVPGAGAIRKSGPPKVLYLLGADEIDITPIPKDAFVVYQGHHGD 319 (375)
T ss_pred HHHHHHHHHhCCcCCCCceEeecchHHHHHHhhccCCCCCcchhhccCCccEEEEcCCCccccCCCCCCCEEEEECCCCC
Confidence 9999999999999888889999999999999999998886532 24789999999999986444557789999999999
Q ss_pred cccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHh
Q 009859 387 HGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 442 (523)
Q Consensus 387 ~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~l 442 (523)
+|+++||||||+++|+|++|+|+|++|++|+++|+++|++|+|+||+||.+|+++|
T Consensus 320 ~ta~~AdvvLP~~~~~E~~g~~~n~~~~~~~~~~~v~p~~~~~~d~~i~~~l~~~~ 375 (375)
T cd02773 320 RGAQIADVILPGAAYTEKSGTYVNTEGRVQQTRKAVSPPGDAREDWKILRALSEVL 375 (375)
T ss_pred cchhhCcEEecCCCcccCCCeEEcCCCeEEeeccccCCCccchHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999886
No 10
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=100.00 E-value=1.6e-71 Score=563.11 Aligned_cols=361 Identities=34% Similarity=0.549 Sum_probs=317.5
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCC-CeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADG-RFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g-~~~~isWdeAl~~ia 147 (523)
+|||+||++||+|.+++|+|+|+||+|+.|+++|++||||||||+|++++.+||++||+|. +| +|+++||+|||+.++
T Consensus 1 ~SId~~d~~Gcni~v~~r~~~V~Ri~p~~n~~vNe~wicdKgRf~yd~l~~~Rl~~Plir~-~g~~~~~~sW~eAl~~ia 79 (366)
T cd02774 1 ESIDVLDSLGSNIRVDIKGNEILRILPKINDELNEEWISDKIRFSYDSLKYQRIKTPLLKL-SNNSFLEIGWKTAFKFLN 79 (366)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEecCCCCCCCCceecCCccccccccccccCCCCcEEC-CCCcEEEcCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999889999999998 55 999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc--hhhhhhcCcccCCCccccccCCEEEEEcCCC
Q 009859 148 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ--SNADLRSGYIMNTSISGLEKADCFLLVGTQP 225 (523)
Q Consensus 148 ~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~di~~ad~il~~G~n~ 225 (523)
++|+++.+++++++.|++.++|++|++++|++.+|++|++++...+. ...++...+.++.++.||++||+||++|+||
T Consensus 80 ~~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad~illiG~n~ 159 (366)
T cd02774 80 KFILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSDLCLLIGSNL 159 (366)
T ss_pred HHHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCCEEEEEcCCc
Confidence 99998877889999999999999999999999999999998755421 1112223445567899999999999999999
Q ss_pred CcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHH
Q 009859 226 RVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKD 305 (523)
Q Consensus 226 ~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~ 305 (523)
++++|+++.|+|++++++|+||++|||+.+.+++..++|.++..+.++++|.+.+++.|+++++|+||+|.++..++++.
T Consensus 160 ~~e~Pvl~~rlrka~~~~~~ki~vi~~~~~~~~~~~~l~~~~~~l~~~l~g~~~~~~~L~~ak~p~Ii~G~~~~~~~~~~ 239 (366)
T cd02774 160 RVESPILNIRLRNRYNKGNKKIFVIGNKFDTTYPSKHIGLSLNTLLKILEGKHLFCKQLKKSKKPLIIIGSSFSLRKNYS 239 (366)
T ss_pred chhhHHHHHHHHHHHHcCCCEEEEeCCccccCCcHHHHCcCHHHHHHHHhcchHHHHHHhcCCCCEEEEChHHhCCCCHH
Confidence 99999999999999877799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCCCCCCCCCceEEEEcccC
Q 009859 306 AIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHG 385 (523)
Q Consensus 306 ~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~~~~l~~~~fvV~~d~~~ 385 (523)
.++.++..|+..+++ +++.++..+|+ +.++|+.+.......+.+.+|.++.+.+ ..+++.+|||+|++|.
T Consensus 240 ~~~~~~~~l~~~~~~------~~~~l~~~an~--a~~lG~~~~~~~~~~~~~~l~~~~~~~~--~~l~~~~fviy~g~~~ 309 (366)
T cd02774 240 FIISKLKNFSSNNEN------NFNFLNIISNS--LYYLGIKKFNSNNKKNLSNLYYIKETNF--QKFNKNNFVIYQGHHF 309 (366)
T ss_pred HHHHHHHHHHHhhcC------ceEEeeHHHHH--HHhcCCCCccchhcccceEEEEcCCchh--hcccCCCEEEEecccC
Confidence 999999999888643 46777777777 8899985322111112344455554433 2366788999999999
Q ss_pred CcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHH
Q 009859 386 DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSE 440 (523)
Q Consensus 386 t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~ 440 (523)
++++++||||||+++|+|++|||+|.|||+|.+++++.|+|++|+||+||+.|+.
T Consensus 310 ~~~a~~AdviLP~a~~~Ek~gt~vN~EGr~Q~~~~a~~~~g~ar~dw~Il~~L~~ 364 (366)
T cd02774 310 LNLANNSNLILPSKTFFEKEALYLNLEGILQKTKKILSFKENIKSDDNIIFSLIL 364 (366)
T ss_pred ccchhhCcEEecCCcccccCceEECCCCcceeehhccCCccccCcHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999975
No 11
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.1e-69 Score=583.52 Aligned_cols=384 Identities=21% Similarity=0.236 Sum_probs=337.7
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC-CCCCeeEcCHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVV 146 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~g~~~~isWdeAl~~i 146 (523)
.|+|++|++||++.+++++|+|+||+|++++|+|+|++|.||++.++.++ ++||++||+|. |+|+|++|||||||++|
T Consensus 1 ~tvC~~C~~gCgi~v~v~dg~iv~veg~~d~pin~G~lC~KG~~~~~~~~s~~RL~~Pl~R~~g~g~~~~iSWdeAld~i 80 (649)
T cd02752 1 RTICPYCSVGCGLIAYVQNGVWVHQEGDPDHPVNRGSLCPKGAALRDFVHSPKRLKYPMYRAPGSGKWEEISWDEALDEI 80 (649)
T ss_pred CccCcCcccCCCeEEEEECCEEEEEEeCCCCCCCCCCcChhHHHHHHhhcCcccccCCEEecCCCCCEEEeCHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999986 89999999997 24899999999999999
Q ss_pred HHHHHhcC----------------CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchh------hhhhcCcc
Q 009859 147 AEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYI 204 (523)
Q Consensus 147 a~~L~~~~----------------~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~------~~~~~~~~ 204 (523)
|++|++++ +++|++++|+..++|+.+++++|++.+|++++++..+.|... ..||...
T Consensus 81 A~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~ar~C~~~tv~~l~~~~G~ga- 159 (649)
T cd02752 81 ARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQARIUHSPTVAGLANTFGRGA- 159 (649)
T ss_pred HHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCCcchhhhHHHHHHHhhcCCCC-
Confidence 99999874 357888888888999999999999999999999887777432 2344332
Q ss_pred cCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH--------
Q 009859 205 MNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL-------- 270 (523)
Q Consensus 205 ~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l-------- 270 (523)
+++++.||++||+||+||+|+.+++|+.+.+++++++++|+||||||||++.|++.++ +|+|.+.+
T Consensus 160 ~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii 239 (649)
T cd02752 160 MTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYII 239 (649)
T ss_pred CCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHH
Confidence 3358899999999999999999999999999999876459999999999999999875 68776543
Q ss_pred -------HHHHcC-----cHHHHHHHhcC----CCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchh
Q 009859 271 -------LEIAEG-----RHPFFSAISNA----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLN 334 (523)
Q Consensus 271 -------~~~~~g-----i~~~a~~l~~a----~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~ 334 (523)
+++ +| |+++|++|+++ ++++|++|.|..+|.+|.+.++++.+|+.++|++|++|+|++.++++
T Consensus 240 ~ytpe~v~~i-tGvp~e~I~~~A~~~a~a~~~~k~~~i~~g~G~tq~~~G~~~ira~~~L~lllGniG~pGgGv~~lrg~ 318 (649)
T cd02752 240 RYTPEEVEDI-CGVPKEDFLKVAEMFAATGRPDKPGTILYAMGWTQHTVGSQNIRAMCILQLLLGNIGVAGGGVNALRGH 318 (649)
T ss_pred hCCHHHHHHH-HCcCHHHHHHHHHHHHhccCCCCcEEEEECCcccccccHHHHHHHHHHHHHHhCCCCCCCCccCcCCCc
Confidence 333 35 68999999998 88899999999999999999999999999999999999999999999
Q ss_pred hHHhhHHhcCCCCCccccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcce-------------
Q 009859 335 AAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRAN------------- 393 (523)
Q Consensus 335 ~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~AD------------- 393 (523)
.|.+|+.++|.++... ++ |+.|.||+. .++|++++|+|++|+|+|+|+++||
T Consensus 319 ~NvqGa~d~g~l~~~l--pg-----y~~G~Np~~s~p~~~~~~~Al~kld~lVv~D~f~teTa~~Ad~~~~~~~~~~t~v 391 (649)
T cd02752 319 SNVQGATDLGLLSHNL--PG-----YLGGQNPNSSFPNANKVRRALDKLDWLVVIDPFPTETAAFWKNPGMDPKSIQTEV 391 (649)
T ss_pred cccccccccccCcccC--cc-----ccCCcChhhcCCCHHHHHHHHhcCCeEEEEeCCCCHHHHhhcccCCccccccCce
Confidence 9999999988765321 11 223889864 2568899999999999999999999
Q ss_pred EEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCC-------C-------CC-----CCHHHH
Q 009859 394 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR-------L-------PY-----DTIGGI 454 (523)
Q Consensus 394 vvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~-------~-------~~-----~~~~~i 454 (523)
||||+++++|++|+++|.++++|+.+|+++|+||+|+||+|+.+|+++||.. + +| .++++|
T Consensus 392 vvLPaa~~~Ek~Gt~tn~~r~vq~~~kav~P~gear~D~~Il~~La~rlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 471 (649)
T cd02752 392 FLLPAACQYEKEGSITNSGRWLQWRYKVVEPPGEAKSDGDILVELAKRLGFLYEKEGGAFPEPITKWNYGYGDEPTPEEI 471 (649)
T ss_pred EEECCCCccccCcceecCCceEEEECCccCCCccCCCHHHHHHHHHHHhCchhhhccCcccccccccccccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999874 2 23 689999
Q ss_pred HHHHHHh
Q 009859 455 RSRIRTV 461 (523)
Q Consensus 455 ~~~~~~~ 461 (523)
++|+...
T Consensus 472 ~~e~~~~ 478 (649)
T cd02752 472 AREINGG 478 (649)
T ss_pred HHHHhcc
Confidence 9999764
No 12
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.1e-68 Score=580.81 Aligned_cols=402 Identities=21% Similarity=0.272 Sum_probs=340.4
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
+|+|++|+.||+|.++++||+|+||+|++++++|+|++|+||++.++.+| |+||++||+|+++|+|++|||||||++||
T Consensus 1 ~t~C~~C~~~C~i~v~v~dg~i~ri~g~~~~p~~~g~lC~kG~~~~~~~y~p~Rl~~Pl~R~~~~~~~~iSWdeAl~~ia 80 (565)
T cd02754 1 KTTCPYCGVGCGVEIGVKDGKVVAVRGDPEHPVNRGRLCIKGLNLHKTLNGPERLTRPLLRRNGGELVPVSWDEALDLIA 80 (565)
T ss_pred CcCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCcCCCCcCchhhccCCcccccCCeEeCCCCCEEEccHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999997 89999999998544999999999999999
Q ss_pred HHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCccchh------hhhhcCcccCCCccccccCC
Q 009859 148 EVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKAD 216 (523)
Q Consensus 148 ~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad 216 (523)
++|++++ ++++++++++..++|+.+++++|++ .+|++|++...+.|... ..+|.. ..+.++.|+++||
T Consensus 81 ~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~-~~~~~~~Di~~ad 159 (565)
T cd02754 81 ERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGAD-GPPGSYDDIEHAD 159 (565)
T ss_pred HHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccCC-CCCCCHHHHhhCC
Confidence 9999875 3679888888888888899999987 59999998776666432 223321 2234688999999
Q ss_pred EEEEEcCCCCcchhhHHHHHHHHHHhC--CCeEEEEcCCCCCCcchhc------cCCCHHHH------------------
Q 009859 217 CFLLVGTQPRVEAAMVNARIRKTVRAN--NAKVGYIGPATDLNYDHQH------LGTGPKTL------------------ 270 (523)
Q Consensus 217 ~il~~G~n~~~~~p~~~~~lr~a~~~~--g~klv~idp~~~~t~~~a~------~g~~~~~l------------------ 270 (523)
+||+||+||.+++|+...+++++++ + |+|||+|||+.+.|+..++ ||+|.+.+
T Consensus 160 ~Il~~G~n~~~s~~~~~~~~~~a~~-~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~la~~~~ii~~~~~d~~fv 238 (565)
T cd02754 160 CFFLIGSNMAECHPILFRRLLDRKK-ANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIEEGLIDRDFI 238 (565)
T ss_pred EEEEECCChhhhhhHHHHHHHHHHh-cCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHHHHHHHHHHHCCCcCHHHH
Confidence 9999999999999999999998865 5 9999999999999988875 67776432
Q ss_pred ----------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCC
Q 009859 271 ----------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 323 (523)
Q Consensus 271 ----------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 323 (523)
+++ +| |+++|++|+++++++|++|.+..++.++.+..+++..|+.++|++|+
T Consensus 239 ~~~t~g~~~~~~~~~~~t~e~~a~i-tgv~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~l~G~~g~ 317 (565)
T cd02754 239 DAHTEGFEELKAFVADYTPEKVAEI-TGVPEADIREAARLFGEARKVMSLWTMGVNQSTQGTAANNAIINLHLATGKIGR 317 (565)
T ss_pred HHHhccHHHHHHHHhhCCHHHHHHH-HCcCHHHHHHHHHHHHhCCCEEEEeCCccccchhHHHHHHHHHHHHHHhCCCCC
Confidence 111 23 68999999999999999999999999999999999999999999999
Q ss_pred CCCceeecchhhHHhhHHhcCCCC---------------------------------Ccc-------ccccCccEEEEEc
Q 009859 324 DWNGLNVLLLNAAQAAALDLGLVP---------------------------------ESS-------NSIESAKFVYLMG 363 (523)
Q Consensus 324 ~g~g~~~l~~~~n~~g~~~~g~~p---------------------------------~~~-------~~~~~i~~l~~~g 363 (523)
+|+|+..+.+..|.+|..++|..+ ... ...+++|++|++|
T Consensus 318 ~Ggg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~~~~~g 397 (565)
T cd02754 318 PGSGPFSLTGQPNAMGGREVGGLANLLPGHRSVNNPEHRAEVAKFWGVPEGTIPPKPGLHAVEMFEAIEDGEIKALWVMC 397 (565)
T ss_pred CCCCCCcCCCCCCCCcccccccCCccCCCCcCCCCHHHHHHHHHHhCCCccccCCCCCcCHHHHHHHHhcCCceEEEEeC
Confidence 998876666555555544333211 000 0356899999999
Q ss_pred CCCCC--------CCCCCCCceEEEEcccC-CcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHH
Q 009859 364 ADDVD--------LEKLPNDAFVVYQGHHG-DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKI 434 (523)
Q Consensus 364 ~n~~~--------~~~l~~~~fvV~~d~~~-t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~I 434 (523)
+||+. .++|++++|+|++|+|+ |+|+++||||||+++++|++|++++.++++|..+|+|+|+||+|+||+|
T Consensus 398 ~Np~~~~p~~~~~~~al~k~~fvV~~d~~~~t~ta~~ADivLP~~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~k~d~~i 477 (565)
T cd02754 398 TNPAVSLPNANRVREALERLEFVVVQDAFADTETAEYADLVLPAASWGEKEGTMTNSERRVSLLRAAVEPPGEARPDWWI 477 (565)
T ss_pred CCccccCcCHHHHHHHHhCCCeEEEEecccCCchhhhccEEecCCccccCCceEEcCCceEEEECCccCCccccCcHHHH
Confidence 99974 14588999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC--CCCCCHHHHHHHHHHhCCC----C--CCccccCC
Q 009859 435 IRALSEVAGMR--LPYDTIGGIRSRIRTVAPN----L--LHVDEREP 473 (523)
Q Consensus 435 l~~La~~lg~~--~~~~~~~~i~~~~~~~~p~----~--~~~~~~~~ 473 (523)
+++||++||.+ ++|.+.+++++++.+..|. + .+++.+..
T Consensus 478 ~~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 524 (565)
T cd02754 478 LADVARRLGFGELFPYTSPEEVFEEYRRLSRGRGADLSGLSYERLRD 524 (565)
T ss_pred HHHHHHHhCCCcCCCCCCHHHHHHHHHHhcCCCCCCcCCCCHHHHhC
Confidence 99999999985 6788999999999876553 1 25666665
No 13
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.8e-68 Score=571.38 Aligned_cols=400 Identities=26% Similarity=0.356 Sum_probs=344.0
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
+|+|++|+.||+|.|++++|+|+||+|++++++|+|++|+|||++++++| |+||++||+|. +|+|++|||||||++|+
T Consensus 1 ~t~C~~C~~~C~i~v~v~~g~v~ri~g~~~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~-~~~~~~isWdeAl~~ia 79 (512)
T cd02753 1 KTVCPYCGVGCGLELWVKDNKIVGVEPVKGHPVNRGKLCVKGRFGFDFVNSKDRLTKPLIRK-NGKFVEASWDEALSLVA 79 (512)
T ss_pred CccCCCCCCCCCEEEEEECCeEEEeecCCCCCCCCCccccchhhHhhhccCccccCCCEECC-CCCEEEecHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999997 99999999999 78999999999999999
Q ss_pred HHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHHHcC-CCccccCCCccchh------hhhhcCcccCCCccccccCC
Q 009859 148 EVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMG-SNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKAD 216 (523)
Q Consensus 148 ~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~~lG-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad 216 (523)
++|++++ +++++++.|+..++|..+++++|++.+| ++++++..+.|... ..+|.. ..+.++.|+++||
T Consensus 80 ~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~~-~~~~~~~d~~~ad 158 (512)
T cd02753 80 SRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSG-AMTNSIADIEEAD 158 (512)
T ss_pred HHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCCC-CCCCCHHHHHhCC
Confidence 9999865 3678888888778888899999998665 46777665555322 123321 2345789999999
Q ss_pred EEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHH-----------------
Q 009859 217 CFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEI----------------- 273 (523)
Q Consensus 217 ~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~----------------- 273 (523)
+||+||+|+..++|.+..+++++. ++|+||++|||+.+.|+..++ ||+|.+.+..+
T Consensus 159 ~il~~G~n~~~~~~~~~~~i~~a~-~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD~al~lal~~~l~~~~~~d~~fv~~ 237 (512)
T cd02753 159 VILVIGSNTTEAHPVIARRIKRAK-RNGAKLIVADPRRTELARFADLHLQLRPGTDVALLNAMAHVIIEEGLYDEEFIEE 237 (512)
T ss_pred EEEEECCChhhhhHHHHHHHHHHH-HCCCeEEEEcCCCccchHhhCeeeCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 999999999999999999999987 499999999999999988876 58776432110
Q ss_pred ----------------------HcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCC
Q 009859 274 ----------------------AEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN 326 (523)
Q Consensus 274 ----------------------~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~ 326 (523)
.+| |+++|++|+++++++|++|.++.++.+|.+..+++..|+.++|+++++|+
T Consensus 238 ~t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~~G~ 317 (512)
T cd02753 238 RTEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVTQHSHGTDNVMALSNLALLTGNIGRPGT 317 (512)
T ss_pred HhhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEEeCchhhhhhhHHHHHHHHHHHHHHhCCCCCCCC
Confidence 023 57899999999999999999999999999999999999999999999998
Q ss_pred ceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecC
Q 009859 327 GLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPA 398 (523)
Q Consensus 327 g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~ 398 (523)
|+..+.+..|..|..+++..|.. .++.+|++|++|.||+. .++|++++|+|++|+++|+|+++||||||+
T Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~i~~l~~~~~Np~~~~p~~~~~~~al~~~~~~V~~d~~~t~ta~~ADvvLP~ 395 (512)
T cd02753 318 GVNPLRGQNNVQGACDMGALPNV--LPGYVKALYIMGENPALSDPNTNHVRKALESLEFLVVQDIFLTETAELADVVLPA 395 (512)
T ss_pred CcCccCCCCCCCCCcccccCCcc--CCceeEEEEEecCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhhhhEEecC
Confidence 88877777777777666665532 23459999999999964 145788999999999999999999999999
Q ss_pred CCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCC--CccccCC
Q 009859 399 SAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLL--HVDEREP 473 (523)
Q Consensus 399 a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~--~~~~~~~ 473 (523)
++|+|++|++.|.++++|.++|+++|+||+|+||+|+.+|+++||.+..|.+.+++++++.+..|.+. +++.+..
T Consensus 396 ~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~~~~~~i~~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 472 (512)
T cd02753 396 ASFAEKDGTFTNTERRVQRVRKAVEPPGEARPDWEIIQELANRLGYPGFYSHPEEIFDEIARLTPQYAGISYERLER 472 (512)
T ss_pred CccCccCeeEECCCCeEEeeccccCCccccCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCcccccCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999888999999999988777664 4555553
No 14
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=100.00 E-value=2.1e-67 Score=593.76 Aligned_cols=399 Identities=17% Similarity=0.173 Sum_probs=326.3
Q ss_pred ccccccccCccccccccccc--------ccccceeeeeeeccCCCCCcEEEEEECCEEEEEecC-------CCCCCCccc
Q 009859 41 NVIDICPVGALTSKPFAFKA--------RNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPR-------LNEDINEEW 105 (523)
Q Consensus 41 n~idvCPvGAlt~k~~~~~a--------R~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~-------~~~~~n~~~ 105 (523)
.+-.+||||||| ++|+|++ |+||+....|+|++|+.||++.++||||+|+||+++ ++++.|+++
T Consensus 25 ~~~~~~pvga~~-~~~~~~~~e~~yr~~~~wd~~~~~t~c~~C~~gC~l~v~V~dG~vvrv~~~~~~p~~~~~~~~~~g~ 103 (912)
T TIGR03479 25 AFGFLKPIQDPL-KAYPYRDWEDLYRKEWTWDKVGRGAHLNNCTGSCAFYVYVKNGIVWREEQSADYPQCNPDIPDYNPR 103 (912)
T ss_pred hhcccccccccc-ccCCCchHHHHhhhhhcccceeccccCCCccCCCCeEEEEECCEEEEEeccccCCCCCCCCCCCCCC
Confidence 477899999999 9999988 999999999999999999999999999999999864 344678899
Q ss_pred cccccccccCCCC-CCCCCCcEEeC---CCCCeeEcCHHHHHHHHHHHHHhcC----CCCEEEEeC-CCCcHHHHHHHHH
Q 009859 106 ISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAG-RLSDAESMMALKD 176 (523)
Q Consensus 106 lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~~~isWdeAl~~ia~~L~~~~----~~~i~~~~g-~~~~~e~~~~~~~ 176 (523)
+|+||++.++++| |+||++||+|+ |+|+|++|||||||++||++|++++ +++|+++.+ +..+.++..+.++
T Consensus 104 ~C~KG~~~~~~~y~p~Rl~~Pl~R~g~RG~G~~~~iSWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r 183 (912)
T TIGR03479 104 GCQKGACYNNYMYGDDRLKYPLKRVGERGEGKWKRISWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSR 183 (912)
T ss_pred cCccchhhhhhhcCcccccCceeecCCCCCCceEEeCHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHH
Confidence 9999999999997 99999999997 4789999999999999999998754 378887755 4556677777899
Q ss_pred HHHHcCCCccccCCCcc----chhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 177 FLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 177 l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
|++.+|+.++++..+.+ +....+|.. ..+.++.|+++||+||+||+||..++|....++++++ ++|+|||+|||
T Consensus 184 ~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~-~~GaklVvIdP 261 (912)
T TIGR03479 184 FANLIGGVSPDIFDDYGDLYTGAFHTFGKA-HDSATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEAR-YNGARVVSIAP 261 (912)
T ss_pred HHHHcCCCccccccccCCCCCcccceeccC-ccCCchhhhhcCcEEEEecCChHHcCCchHHHHHHHH-hcCCeEEEECC
Confidence 99999998766543321 122234432 2235789999999999999999999999899999886 49999999999
Q ss_pred CCCCCcchhc------cCCCHHH---------------------------------------------------------
Q 009859 253 ATDLNYDHQH------LGTGPKT--------------------------------------------------------- 269 (523)
Q Consensus 253 ~~~~t~~~a~------~g~~~~~--------------------------------------------------------- 269 (523)
+++.|++.++ ||+|++.
T Consensus 262 r~t~tA~~AD~wlpirPGTD~ALalam~~vIi~e~l~D~~fv~~~T~~p~LV~~d~g~~lr~~d~~~~~~~~~~~v~d~~ 341 (912)
T TIGR03479 262 DYNPSTIHADLWLPVRVGTDAALALGMVQVIIDEKLYDAAFLKEQTDLPLLVRMDTGKFLREADVEAGGSDKVFYIWDSK 341 (912)
T ss_pred CCChhhhhCCeecCCCCCcHHHHHHHHHHHHHHcCcccHHHHHHhCCCceEEEcCCCceeeHHhcCccCCCCceEEEECC
Confidence 9999988765 4554321
Q ss_pred -------------------------------------------------------------HHHHHcC-----cHHHHHH
Q 009859 270 -------------------------------------------------------------LLEIAEG-----RHPFFSA 283 (523)
Q Consensus 270 -------------------------------------------------------------l~~~~~g-----i~~~a~~ 283 (523)
++++ +| |+++|++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~p~l~G~~~v~~~~g~~~~~~t~f~~l~~~~~~yTpe~aa~i-tGVpae~I~~lAr~ 420 (912)
T TIGR03479 342 TGKAVKAKGSMGSEDKTLKLDDFDPALEGTFEARLKNGNTIQVRTVFEGLRAELADYTPEKAAAI-TGVPPSVIRELARE 420 (912)
T ss_pred CCCcccCCCcccccccccccccCCccccCceeEeccCCCeeeeecHHHHHHHHhcCCCHHHHHHH-HCcCHHHHHHHHHH
Confidence 1122 24 6899999
Q ss_pred HhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhH---HhhHH--------------hcCCC
Q 009859 284 ISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAA---QAAAL--------------DLGLV 346 (523)
Q Consensus 284 l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n---~~g~~--------------~~g~~ 346 (523)
|+++++++|++|.|++++.+|.+..+++.+|+.+||++|++|+|++.+.++.+ ..|.. ..+..
T Consensus 421 ~a~~~~~~i~~g~G~~~~~~g~~~~rai~~L~~LtGniG~~Ggg~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 500 (912)
T TIGR03479 421 FAKAKKASIITGFNSAKWYHGDLMERALFLLLALTGNWGKTGTGDTHYIGQDKNWVLPGVKALAFPTLKAPTRTDEMGVP 500 (912)
T ss_pred HHhcCceEEEeccccccccccHHHHHHHHHHHHHhCCCCCCCCccccccccccccccccccccccccccCCchhhhccCC
Confidence 99999999999999999999999999999999999999999988765433211 11100 00000
Q ss_pred -----------------CCcc--------c-----------cccCccEEEEEcCCCCCC--------C-CCCCCceEEEE
Q 009859 347 -----------------PESS--------N-----------SIESAKFVYLMGADDVDL--------E-KLPNDAFVVYQ 381 (523)
Q Consensus 347 -----------------p~~~--------~-----------~~~~i~~l~~~g~n~~~~--------~-~l~~~~fvV~~ 381 (523)
|... + ..++||++|++++||+.. + .|++++|+|++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~p~~p~~~~~ik~l~~~~~Np~~~~~~~~~~~~~~l~kldfiV~~ 580 (912)
T TIGR03479 501 TTVWTYYHAGNLKAWTGPGLDETGAYLDESIDKGWMPNYPRDGKDPKVYIVLRGNPFRRAKGAKAVRENLLPKLELIVDI 580 (912)
T ss_pred ccceeeeeccchhhhcCCccccHHHHHHHHHhcCCCccccccCCCCeEEEEeCCCccccCccHHHHHHHHHccCCEEEEe
Confidence 1100 0 115699999999999751 2 36899999999
Q ss_pred cccCCcccCcceEEecCCCCCCCCc-eeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhC
Q 009859 382 GHHGDHGVYRANVILPASAFSEKEG-TYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 443 (523)
Q Consensus 382 d~~~t~ta~~ADvvLP~a~~~E~~g-t~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg 443 (523)
|+++|+|++|||||||+++|+|+++ ++++.++++|.++|+|+|+||+|+||+|+++||++||
T Consensus 581 D~~mt~Ta~~ADiVLPaat~~E~~d~~~~~~~~~v~~~~~av~P~geak~D~~I~~~LA~rlg 643 (912)
T TIGR03479 581 NFRMDSTAMYADIVLPAAWHYEKHDLRTTSGHRFINFFDRPVKPMGESKTDWQIFALLAKKIQ 643 (912)
T ss_pred ccccCCCcccCCEEccCCCcccccCCEeccCCceeEEeccccCCCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999988 5667888999999999999999999999999999997
No 15
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=100.00 E-value=4.2e-67 Score=587.34 Aligned_cols=395 Identities=16% Similarity=0.189 Sum_probs=337.4
Q ss_pred cceeeeeeeccCCCCCcEEEEE-------ECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC-CCCCe
Q 009859 64 ELKGTETIDVTDAVGSNIRIDS-------RGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGRF 134 (523)
Q Consensus 64 el~~~~siC~~C~~gC~i~v~v-------r~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~g~~ 134 (523)
..+.++|+|++|++||+|.+++ +||+|++|+|++++|+|+|++|.||++.++.++ |+||++||+|. |+|+|
T Consensus 41 ~~~~v~SvC~~C~~gCgl~v~v~~~~~~~~dg~vv~v~g~~~~Pvn~G~lC~KG~~~~~~~~~pdRL~~PL~R~~G~g~~ 120 (1009)
T TIGR01553 41 DAKQTTSVCCYCSVSCGLLVYSSSHTGDNKTNRAIHVEGDPDHPINRGSLCPKGASTWDLVNNERRPANPLYRAPGSDQW 120 (1009)
T ss_pred CceEEeeECCCCcCCCCEEEEEccccccccCCeEEEEECCCCCCCCCCccCHhHHHHHHhhcCCCcccCCEEecCCCCce
Confidence 4578999999999999999999 789999999999999999999999999999996 99999999997 57799
Q ss_pred eEcCHHHHHHHHHHHHHhcC----------------CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchh--
Q 009859 135 KAVNWRDALAVVAEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN-- 196 (523)
Q Consensus 135 ~~isWdeAl~~ia~~L~~~~----------------~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~-- 196 (523)
++|||||||++||++|++++ ++++++++|+..++|+.+++++|++.+|++|+++..+.|...
T Consensus 121 ~~ISWDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~ 200 (1009)
T TIGR01553 121 EEISWDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTV 200 (1009)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHH
Confidence 99999999999999999875 246888888888899999999999999999999888877432
Q ss_pred ----hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCC
Q 009859 197 ----ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTG 266 (523)
Q Consensus 197 ----~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~ 266 (523)
..+|... .+.++.|+++||+||+||+||.+++|+...++++++ ++|+|||+||||++.|++.++ +|+|
T Consensus 201 ~al~~~~G~~~-~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak-~~GakiIvIDPR~t~tA~~AD~~l~irPGTD 278 (1009)
T TIGR01553 201 ASLAPSFGRGA-MTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAK-KKGAKIIHIDPRFNRTATVADLYAPIRSGSD 278 (1009)
T ss_pred HHHHHhhcCCC-CCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHH-HcCCEEEEEcCCCCchhHhhccEeCCCCChH
Confidence 2344322 234689999999999999999999999888888876 499999999999999988765 4544
Q ss_pred HHH-----------------------------------------------------------------------------
Q 009859 267 PKT----------------------------------------------------------------------------- 269 (523)
Q Consensus 267 ~~~----------------------------------------------------------------------------- 269 (523)
.+.
T Consensus 279 ~AL~~am~~~Ii~e~l~D~~Fv~~~T~gp~LV~~~~~~~~g~f~g~d~~~~~~~~~~w~~~~~~~g~~~~~~~l~~~~tv 358 (1009)
T TIGR01553 279 IAFLNGMIKYILEKELYQKEYVVNYTNASFIVGEGFAFEDGLFAGYNKETRKYDKSKWGYEFDENGNPKRDETLKHPRCV 358 (1009)
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccH
Confidence 321
Q ss_pred ---------------HHHHHcC-----cHHHHHHHhcCC----CcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCC
Q 009859 270 ---------------LLEIAEG-----RHPFFSAISNAK----NPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDW 325 (523)
Q Consensus 270 ---------------l~~~~~g-----i~~~a~~l~~a~----~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g 325 (523)
++++ +| |+++|++|++++ +++|++|+|..+|.+|.+..+++.+|+.++|++|++|
T Consensus 359 f~~lk~~v~~yTpE~va~i-tGVpae~I~~lA~~~a~a~~p~k~~~i~~g~G~tqh~~G~~~vrai~~L~lLtGniG~pG 437 (1009)
T TIGR01553 359 FNILKEHYSRYTPEKVSAI-CGTPKELFLKVYEEYCKTGKPNKAMTILYALGWTQHSVGTQNIRAMSINQLLLGNIGVPG 437 (1009)
T ss_pred HHHHHHHHHhCCHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCCcEEEEeCCccccchhHHHHHHHHHHHHHHhCCCCCCC
Confidence 1112 24 789999999874 5688899999999999999999999999999999999
Q ss_pred CceeecchhhHHhhHHhcCCCCC---------------------------------------------------------
Q 009859 326 NGLNVLLLNAAQAAALDLGLVPE--------------------------------------------------------- 348 (523)
Q Consensus 326 ~g~~~l~~~~n~~g~~~~g~~p~--------------------------------------------------------- 348 (523)
+|++.++++.|.+|..++|..+.
T Consensus 438 gG~~~lrG~~NvqG~~d~g~~~~~lPgy~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 517 (1009)
T TIGR01553 438 GGINALRGHSNVQGSTDHGLLMHILPGYLGTPRASIPTYEQYTKKFTPVSKDPQSANYWSNFPKFFASYIKSMWGDAATN 517 (1009)
T ss_pred CccccCCCccccCCCcccccCcccCCcccccCchhhhhhhhhhhccccccccccccchhhccchhHHHHHHHhhcccccc
Confidence 99999988888887766653210
Q ss_pred -----------cc------------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcc-----
Q 009859 349 -----------SS------------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRA----- 392 (523)
Q Consensus 349 -----------~~------------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~A----- 392 (523)
.. ...++||++|++|.||+. .++|++++|+|++|+|+|+|+.+|
T Consensus 518 ~n~~~~~~~p~~~~g~~~~~~~~~~~~~G~Ik~l~v~G~Np~~s~P~~~~~~~AL~kLdflVv~D~f~teTA~~A~~~~~ 597 (1009)
T TIGR01553 518 ENGWAYDYLPKGEDGYDSWLTLFDDMFQGKIKGFFAWGQNPLNSGPNSNKTREALTKLKWMVVMDPFDNETGSFWRGPGM 597 (1009)
T ss_pred ccccccccCCccccccchHHHHHHHHhCCCceEEEEeCCChhhcCCCHHHHHHHHhCCCEEEEEeCccCHHHHhhhhcCC
Confidence 00 024679999999999974 246889999999999999999998
Q ss_pred --------eEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhC--C--------------CCCC
Q 009859 393 --------NVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG--M--------------RLPY 448 (523)
Q Consensus 393 --------DvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg--~--------------~~~~ 448 (523)
|||||+++++|++|+++|.++++|+.+|+++|+||+|+||+|+.+||++|| + .+.|
T Consensus 598 ~~~d~~t~dvVLPaa~~~Ek~gt~tn~~r~vq~~~kav~P~gear~D~~I~~~La~rl~~~~~~~~~~~~~~~~~~~w~~ 677 (1009)
T TIGR01553 598 DPKEIKTEVFFLPTAVFIEKEGSISNSGRWMQWRYKGPDPPGNAIPDGDIIVELAKRVQELYAKEGGKLAEPVTKLKWDY 677 (1009)
T ss_pred cccccCccEEEECCCCccccCeeEEcCCceEEEecccCCCccccCCHHHHHHHHHHHHHHHHHhcCCCCccccccCcccc
Confidence 799999999999999999999999999999999999999999999999997 1 1223
Q ss_pred -----CCHHHHHHHHHHh
Q 009859 449 -----DTIGGIRSRIRTV 461 (523)
Q Consensus 449 -----~~~~~i~~~~~~~ 461 (523)
.+.++|++|+...
T Consensus 678 ~~~~~~~~~~i~~e~~g~ 695 (1009)
T TIGR01553 678 WVPDHPDAHEIAKEINGY 695 (1009)
T ss_pred ccCCCCCHHHHHHHcCCC
Confidence 3789999988654
No 16
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=100.00 E-value=1.9e-66 Score=574.68 Aligned_cols=393 Identities=25% Similarity=0.379 Sum_probs=341.1
Q ss_pred eeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHHH
Q 009859 70 TIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAE 148 (523)
Q Consensus 70 siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~ 148 (523)
|+|++|+.||+|.|++++|+|+||+|++++++|++++|+||||.++++| |+||++||+|. +|+|++|||||||+++++
T Consensus 1 t~C~~C~~~C~i~v~~~~g~i~rv~~~~~~~~n~g~~C~kg~~~~~~~~~~~Rl~~P~~R~-~g~~~~isWdeAl~~ia~ 79 (671)
T TIGR01591 1 TVCPYCGVGCSLNLVVKDGKIVRVEPYQGHKANRGHLCVKGYFAWEFINSKDRLTTPLIRE-GDKFREVSWDEAISYIAE 79 (671)
T ss_pred CcCCCCCCCCCEEEEEECCEEEEeecCCCCCCCCCcccCCccchhhhcCCcccccCCeEcC-CCCEEEccHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999997 99999999999 789999999999999999
Q ss_pred HHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHHH-cCCCccccCCCccchh------hhhhcCcccCCCccccccCCE
Q 009859 149 VMLQAK----PEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKADC 217 (523)
Q Consensus 149 ~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~~-lG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad~ 217 (523)
+|++++ +++++++.|+..++|+.+++++|++. +|+++++++.+.|... ..+|.. ..+.++.|+++||+
T Consensus 80 ~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~di~~ad~ 158 (671)
T TIGR01591 80 KLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG-AMSNTISEIENADL 158 (671)
T ss_pred HHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC-CCCCCHHHHHhCCE
Confidence 999764 36898898888888999999999996 9999998877666322 123322 23457899999999
Q ss_pred EEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHH-----------------
Q 009859 218 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA----------------- 274 (523)
Q Consensus 218 il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~----------------- 274 (523)
||+||+||..++|.+..+++++.+ +|+||++|||+.+.|+..++ ||+|...+..++
T Consensus 159 il~~G~n~~~~~~~~~~~i~~a~~-~G~klvvidp~~s~ta~~ad~~i~i~Pgtd~al~lal~~~li~~~~~d~~f~~~~ 237 (671)
T TIGR01591 159 IVIIGYNPAESHPVVAQYLKNAKR-NGAKIIVIDPRKTETAKIADLHIPLKPGTDIALLNAMANVIIEEGLYDKAFIEKR 237 (671)
T ss_pred EEEECCChhhccCHHHHHHHHHHH-CCCeEEEECCCCChhhHhhCcccCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 999999999999999999999875 99999999999999988876 688764321110
Q ss_pred ----------------------cC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCc
Q 009859 275 ----------------------EG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNG 327 (523)
Q Consensus 275 ----------------------~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g 327 (523)
+| |+++|++|+++++++|++|.+..++.++.+..+++..|+.++|+++++|+|
T Consensus 238 t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~g~~G~g 317 (671)
T TIGR01591 238 TEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGMGVTQHSQGVETVMALINLAMLTGNIGKPGGG 317 (671)
T ss_pred hhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecCcccccchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 23 578999999999999999999999999999999999999999999999988
Q ss_pred eeecchhhHHhhHHhcCCCCC----------------------------cc----------ccccCccEEEEEcCCCCC-
Q 009859 328 LNVLLLNAAQAAALDLGLVPE----------------------------SS----------NSIESAKFVYLMGADDVD- 368 (523)
Q Consensus 328 ~~~l~~~~n~~g~~~~g~~p~----------------------------~~----------~~~~~i~~l~~~g~n~~~- 368 (523)
+..+.+.+|..|..++|..|. .. ...+++|++|+++.||+.
T Consensus 318 ~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~g~i~~l~~~~~np~~~ 397 (671)
T TIGR01591 318 VNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGVVKLPAEPGLRIPEMIDAAADGDVKALYIMGEDPLQS 397 (671)
T ss_pred CcccCCCCcCCCchhhccCcccCCCCCCCCCHHHHHHHHHHcCCCcCCCCCCCCHHHHHHHHhcCCceEEEEecCCcccc
Confidence 887776667666555443211 00 135789999999999974
Q ss_pred -------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHH
Q 009859 369 -------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEV 441 (523)
Q Consensus 369 -------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~ 441 (523)
.++|++++|+|++|+++|+|+++||||||+++|+|++|+++|.++++|.++++++|+||+|+||+|+++|+++
T Consensus 398 ~~~~~~~~~al~k~~~~V~~d~~~~~ta~~ADiVLP~~~~~E~~g~~~~~~~~~~~~~~~i~p~ge~r~~~~i~~~La~~ 477 (671)
T TIGR01591 398 DPNTSKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWLEKEGTFTNAERRIQRFFKAVEPKGESKPDWEIIQELANA 477 (671)
T ss_pred CCCHHHHHHHHhCCCEEEEEecCCCchhhhCCEEecCCcccCCCccEEcCCceEEEeccccCCCcCCCcHHHHHHHHHHH
Confidence 1468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCHHHHHHHHHHhCCCC
Q 009859 442 AGMRLPYDTIGGIRSRIRTVAPNL 465 (523)
Q Consensus 442 lg~~~~~~~~~~i~~~~~~~~p~~ 465 (523)
||.++.|.+.+++++++....+.+
T Consensus 478 lg~~~~~~~~~~~~~~~~~~~~~~ 501 (671)
T TIGR01591 478 LGLDWNYNHPQEIMDEIRELTPLF 501 (671)
T ss_pred hCCCCCCCCHHHHHHHHHHhCccc
Confidence 999999999999999987766544
No 17
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=9.7e-67 Score=555.21 Aligned_cols=368 Identities=19% Similarity=0.248 Sum_probs=311.0
Q ss_pred eeeecc-CCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCC--CCeeEcCHHHHHH
Q 009859 69 ETIDVT-DAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGAD--GRFKAVNWRDALA 144 (523)
Q Consensus 69 ~siC~~-C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~--g~~~~isWdeAl~ 144 (523)
.|+|++ |+.||++.++++||+|+||+|++++|+|+|++|.||++.++.++ |+||++||+|+++ |+|++|||||||+
T Consensus 1 ~t~C~~~C~~~C~i~v~v~~g~i~~v~g~~~~p~n~g~lC~kG~~~~~~~~~pdRl~~Pl~R~g~rgg~~~~isWdeAl~ 80 (501)
T cd02766 1 RSVCPLDCPDTCSLLVTVEDGRIVRVEGDPAHPYTRGFICAKGARYVERVYSPDRLLTPLKRVGRKGGQWERISWDEALD 80 (501)
T ss_pred CCcCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCeeCcchhccHhhhcChhhhccceeecCCCCCceEEecHHHHHH
Confidence 478998 99999999999999999999999999999999999999999997 9999999999843 6999999999999
Q ss_pred HHHHHHHhcC----CCCEEEEeCC--CCcHHHHHHHHHHHHHcCCCccccCCCccchh------hhhhcCcccCCCcccc
Q 009859 145 VVAEVMLQAK----PEEIVGIAGR--LSDAESMMALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGL 212 (523)
Q Consensus 145 ~ia~~L~~~~----~~~i~~~~g~--~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~di 212 (523)
+||++|++++ +++|+++.+. ....+.. +.++|++.+|++|++. +.|... ..+|.. .+.+++|+
T Consensus 81 ~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~-~~~~~~~~~Gs~~~~~--~~c~~~~~~~~~~~~G~~--~~~~~~d~ 155 (501)
T cd02766 81 TIAAKLKEIKAEYGPESILPYSYAGTMGLLQRA-ARGRFFHALGASELRG--TICSGAGIEAQKYDFGAS--LGNDPEDM 155 (501)
T ss_pred HHHHHHHHHHHhhCCcEEEEecccCCccccchH-HHHHHHHhCCCCCCCC--CccHHHHHHHHHhhcCCC--CCCCHHHH
Confidence 9999999886 3678776543 2223333 3488999999999764 344322 223332 13578999
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH----------------
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL---------------- 270 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l---------------- 270 (523)
++||+||+||+||.+++|....+++++. ++|+|||+|||+.+.|+..++ ||+|...+
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~-~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~d~~ 234 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEAR-KRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFREGLYDRD 234 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHH-HCCCEEEEECCCCCccHHHhCeeeccCCCcHHHHHHHHHHHHHHCCCccHH
Confidence 9999999999999999999888888865 599999999999999998875 57765421
Q ss_pred ------------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCC
Q 009859 271 ------------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI 321 (523)
Q Consensus 271 ------------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~ 321 (523)
+++ +| |+++|+.|+++++++|++|.++.++.+|.+..+++.+|+.++|++
T Consensus 235 fv~~~t~gf~~~~~~v~~~t~e~~~~~-tgv~~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~ 313 (501)
T cd02766 235 FLARHTEGFEELKAHLETYTPEWAAEI-TGVSAEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNI 313 (501)
T ss_pred HHHHhcCCHHHHHHHHhhCCHHHHHHH-HCCCHHHHHHHHHHHHhCCCcEEEecchhhhccchHHHHHHHHHHHHHhCCC
Confidence 111 23 678999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCC--------CC-CCCCCceEEEEcccCCcccCcc
Q 009859 322 RPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LE-KLPNDAFVVYQGHHGDHGVYRA 392 (523)
Q Consensus 322 ~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~~-~l~~~~fvV~~d~~~t~ta~~A 392 (523)
+++|+|+.... ..++||++|++++||+. .+ .+++++|+|++|+|+|+|+++|
T Consensus 314 g~~G~g~~~~~-------------------~~~~ik~l~~~g~Np~~~~p~~~~~~~a~l~~~~f~Vv~D~~~teTa~~A 374 (501)
T cd02766 314 GVPGGGAFYSN-------------------SGPPVKALWVYNSNPVAQAPDSNKVRKGLAREDLFVVVHDQFMTDTARYA 374 (501)
T ss_pred CCCCCcccCCC-------------------CCCCeeEEEEeCCCHHhhCCCHHHHHHHHhcCCCeEEEEecCcCchHhhc
Confidence 99987764321 11589999999999964 13 5678999999999999999999
Q ss_pred eEEecCCCCCCCCceeecC-CCceEeecCccCCCCCCccHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhC
Q 009859 393 NVILPASAFSEKEGTYENT-EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRL--PYDTIGGIRSRIRTVA 462 (523)
Q Consensus 393 DvvLP~a~~~E~~gt~~n~-eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~--~~~~~~~i~~~~~~~~ 462 (523)
|||||+++|+|++|+++++ ++++|.++|+++|+||+|+||+|+++||++||.+. .+.+.+++++++.+..
T Consensus 375 DvVLP~a~~~E~~~~~~~~~~~~~~~~~~~v~p~ge~~~d~~I~~~La~~lg~~~~~~~~~~~~~~~~~~~~~ 447 (501)
T cd02766 375 DIVLPATTFLEHEDVYASYWHYYLQYNEPAIPPPGEARSNTEIFRELAKRLGFGEPPFEESDEEWLDQALDGT 447 (501)
T ss_pred cEeecccCcccccccccccCcceEEecccccCCCccCcCHHHHHHHHHHHcCCCCcCCCCCHHHHHHHHhccC
Confidence 9999999999999999986 57899999999999999999999999999999974 4568999999886554
No 18
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=100.00 E-value=6.9e-66 Score=547.47 Aligned_cols=389 Identities=27% Similarity=0.370 Sum_probs=327.2
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
+|+|++|+.||+|.++++||+|+||+|++++++|+|++|+|||++++.+| |+||++||+|. +|+|++|||||||++|+
T Consensus 1 ~s~C~~C~~gC~i~v~v~dg~v~rv~~~~~~~~n~g~lC~kG~~~~~~~~~~~Rl~~Pl~R~-~g~~~~isWdeAl~~ia 79 (472)
T cd02771 1 PSICHHCSVGCNISLGERYGELRRVENRYNGAVNHYFLCDRGRFGYGYVNSRDRLTQPLIRR-GGTLVPVSWNEALDVAA 79 (472)
T ss_pred CCcCcCcccCCCcEEEEECCEEEEEECCCCCCCCCcccchhhhcccccccCCcccCCCceec-CCceeEecHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999996 99999999998 78999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCC
Q 009859 148 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPR 226 (523)
Q Consensus 148 ~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~ 226 (523)
++|++++ +++++++++..++|+.+++++|++ .+|++++++....+. ...+......+.++.|+++||+||+||+||.
T Consensus 80 ~~l~~~~-~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~-~~~~~~~~~~~~~~~di~~ad~il~~G~n~~ 157 (472)
T cd02771 80 ARLKEAK-DKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHRARRLI-AEILRNGPIYIPSLRDIESADAVLVLGEDLT 157 (472)
T ss_pred HHHHHhh-hhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcchhhhh-hhhhcccCCCCCCHHHHHhCCEEEEEeCCcc
Confidence 9999986 468888888888999999999998 589988765433221 1112212233457899999999999999999
Q ss_pred cchhhHHHHHHHHHHhC-------------------------CCeEEEEcCCCCCCcchhc------cCCCHHHHHHHH-
Q 009859 227 VEAAMVNARIRKTVRAN-------------------------NAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA- 274 (523)
Q Consensus 227 ~~~p~~~~~lr~a~~~~-------------------------g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~- 274 (523)
+++|++..+++++++++ |+++++|||+.+.+...++ +|++.+....+.
T Consensus 158 ~~~p~~~~~~~~a~~~~~~~~v~~~~~~~~a~~a~~~~~~~pg~~~~~i~~~~~~~~~~ad~~~~~~pg~~~al~~~l~~ 237 (472)
T cd02771 158 QTAPRIALALRQAARRKAVELAALSGIPKWQDAAVRNIAQGAKSPLFIVNALATRLDDIAAESIRASPGGQARLGAALAR 237 (472)
T ss_pred ccchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcccCCCCceEEeechhhhhhhhhhhhhhhCcCCHHHHHHHHHh
Confidence 99999999999988766 6666777776665544432 455544332221
Q ss_pred ---------cC------cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhh
Q 009859 275 ---------EG------RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA 339 (523)
Q Consensus 275 ---------~g------i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g 339 (523)
+| ++++|++|+++++++|++|.+. ++.+..+++.+|+.++|+++ +++|+..+....|..|
T Consensus 238 ~~~~~~~~~~gv~~~~~i~~lA~~l~~a~~~~i~~g~g~----~~~~~~~al~~L~~~~G~~g-~g~g~~~~~~~~n~~g 312 (472)
T cd02771 238 AVDASAAGVSGLAPKEKAARIAARLTGAKKPLIVSGTLS----GSLELIKAAANLAKALKRRG-ENAGLTLAVEEGNSPG 312 (472)
T ss_pred hChhhhhhccCCChHHHHHHHHHHHhcCCCcEEEECCCc----CcHHHHHHHHHHHHHhcCCC-CCcceeeccccccchh
Confidence 12 5689999999999999999987 45689999999999999998 6677777777778888
Q ss_pred HHhcCCCCCc---c-------ccccCccEEEEEcCCCCC-------CCCCCCCceEEEEcccCCcccCcceEEecCCCCC
Q 009859 340 ALDLGLVPES---S-------NSIESAKFVYLMGADDVD-------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 402 (523)
Q Consensus 340 ~~~~g~~p~~---~-------~~~~~i~~l~~~g~n~~~-------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~ 402 (523)
..++|..|.. . ...+++|++|++|.||+. .++|++++|+|++|+++|+|+++||||||+++|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~~al~~~~~~V~~d~~~t~ta~~ADvvLP~~~~~ 392 (472)
T cd02771 313 LLLLGGHVTEPGLDLDGALAALEDGSADALIVLGNDLYRSAPERRVEAALDAAEFVVVLDHFLTETAERADVVLPAASFA 392 (472)
T ss_pred hhhcCCCCCCCCCCHHHHHHHHhcCCceEEEEeccCcccCCChHHHHHHHhcCCeEEEEecCCChhHHhCCEEeccCccc
Confidence 8777654321 1 146889999999999974 1357789999999999999999999999999999
Q ss_pred CCCceeecCCCceEeecCcc-CCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCC
Q 009859 403 EKEGTYENTEGCTQQTLPAV-PTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLL 466 (523)
Q Consensus 403 E~~gt~~n~eg~~q~~~~~v-~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~ 466 (523)
|++|+++|.+|++|.+++++ +|+||+|+||+||++|+++||.++.| +..++++++.+..|.|.
T Consensus 393 E~~g~~~~~~~~~~~~~~~i~~p~ge~k~d~~I~~~La~rlg~~~~~-~~~~~~~~~~~~~~~~~ 456 (472)
T cd02771 393 EKSGTFVNYEGRAQRFFKAYDDPAGDARSDWRWLHALAAKLGGKLVP-SDAAILDEIIALVPGKA 456 (472)
T ss_pred ccCCcEEccCCeEEEeeecccCCCccCchHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHhHHhc
Confidence 99999999999999999999 99999999999999999999998877 88899999999988775
No 19
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=100.00 E-value=1.2e-65 Score=532.63 Aligned_cols=366 Identities=44% Similarity=0.592 Sum_probs=307.7
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
+|+|++|+.||+|.+++++|+|+||+|++++|+|+||+|+|||+++++++ |+||++||+|. +|+|++||||||++.|+
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~~i~~~~~~~~n~g~~C~kg~~~~~~~~~~~Rl~~Pl~r~-~~~~~~isWdeAl~~ia 79 (386)
T cd02768 1 ESIDVHDALGSNIRVDVRGGEVMRILPRENEAINEEWISDKGRFGYDGLNSRQRLTQPLIKK-GGKLVPVSWEEALKTVA 79 (386)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEeCCCCCCCCCceecccccchhhccCCcccccCCeEec-CCceeEcCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999997 99999999998 78999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhh--cCcccCCCccccccCCEEEEEcCCC
Q 009859 148 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLR--SGYIMNTSISGLEKADCFLLVGTQP 225 (523)
Q Consensus 148 ~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~di~~ad~il~~G~n~ 225 (523)
++|+++++++++++.|+..++|+.+++++|++.+|++++++....+....... .....+.++.|+++||+||+||.||
T Consensus 80 ~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~ 159 (386)
T cd02768 80 EGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEADAVLLIGSNL 159 (386)
T ss_pred HHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCCEEEEEcCCc
Confidence 99999987789999999999999999999999999998877554432211111 1122345789999999999999999
Q ss_pred CcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cC-CCHHHHHHHHcC--cHHHHHHHhcCCCcEEEEcC
Q 009859 226 RVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LG-TGPKTLLEIAEG--RHPFFSAISNAKNPVIIVGA 296 (523)
Q Consensus 226 ~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g-~~~~~l~~~~~g--i~~~a~~l~~a~~~~ii~g~ 296 (523)
.+++|++..+++++.+++|+||++|||+.+.+ .++ || .....+..++.+ +.++|+.|+++++++|++|.
T Consensus 160 ~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~~~i~~~~~~~~a~~l~~a~~~~i~~g~ 237 (386)
T cd02768 160 RKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLLDIAEGKHLKPFAKSLKKAKKPLIILGS 237 (386)
T ss_pred chhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHHHHHhhccHHHHHHHHhcCCCcEEEEcc
Confidence 99999999999998775699999999999888 333 45 333344444333 45899999999999999999
Q ss_pred CcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCC--CCCc-cccccCccEEEEEcCCCCCC----
Q 009859 297 GLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGL--VPES-SNSIESAKFVYLMGADDVDL---- 369 (523)
Q Consensus 297 ~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~--~p~~-~~~~~~i~~l~~~g~n~~~~---- 369 (523)
++. +.++.+..+++..|+.++|. ++++ ..+....|..|...++. .+.. ...++++|++|++++||+..
T Consensus 238 ~~~-~~~~~~~~~a~~~l~~~~G~---~~~~-~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~i~~l~v~~~np~~~~p~~ 312 (386)
T cd02768 238 SAL-RKDGAAILKALANLAAKLGT---GAGL-WNGLNVLNSVGARLGGAGLDAGLALLEPGKAKLLLLGEDELDRSNPPA 312 (386)
T ss_pred hhh-cCCcHHHHHHHHHHHHHhCC---CCcc-ccccHHHHHHHHHHhcCCHHHHhhhccCCceeEEEEcCCCccccChHH
Confidence 999 88899999999999999982 2222 23344556656554432 1111 11468899999999999641
Q ss_pred -CCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHh
Q 009859 370 -EKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 442 (523)
Q Consensus 370 -~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~l 442 (523)
.+|.+++|+|++|.|+|+|+++||||||+++|+|++|+|+|.+|++|.++|+++|+||+|+||+||.+|+++|
T Consensus 313 ~~al~~~~~~Vv~d~~~teta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~i~p~~~~~~d~~i~~~La~~~ 386 (386)
T cd02768 313 AVALAAADAFVVYQGHHGDTGAQADVILPAAAFTEKSGTYVNTEGRVQRFKKAVSPPGDAREDWKILRALSNLL 386 (386)
T ss_pred HHHHhcCCeEEEEeccCchhhhhCCEEeccCcccccCceEECCCCceEEeccccCCCccchhHHHHHHHHHhhC
Confidence 1678899999999999999999999999999999999999999999999999999999999999999999875
No 20
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.1e-65 Score=542.62 Aligned_cols=375 Identities=16% Similarity=0.186 Sum_probs=316.4
Q ss_pred eeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCC-------CccccccccccccCCCC-CCCCCCcEEeCC---CCCee
Q 009859 67 GTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDI-------NEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFK 135 (523)
Q Consensus 67 ~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~-------n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g---~g~~~ 135 (523)
...+.|++|+.||+|.++++||+|+||+|++++|. |+|++|+||++.++.+| |+||++||+|+| +|+|+
T Consensus 4 ~~~~~c~~C~~gC~i~~~v~dg~v~~v~g~~~~p~~~~~~~~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~ 83 (461)
T cd02750 4 VRSTHGVNCTGSCSWNVYVKNGIVTREEQATDYPETPPDLPDYNPRGCQRGASFSWYLYSPDRVKYPLKRVGARGEGKWK 83 (461)
T ss_pred eccCCCCCCCCCCceEEEEECCEEEEEecCCCCCcccccccccccccchhhhhhHhhhcChhhhccceeeccCCCCCceE
Confidence 44566789999999999999999999999987775 68999999999999997 999999999973 68999
Q ss_pred EcCHHHHHHHHHHHHHhcC----CCCEEEEeC-CCCcHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcCcccC
Q 009859 136 AVNWRDALAVVAEVMLQAK----PEEIVGIAG-RLSDAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMN 206 (523)
Q Consensus 136 ~isWdeAl~~ia~~L~~~~----~~~i~~~~g-~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~ 206 (523)
+|||||||++||++|++++ +++++++.+ +..+.+..+++++|++.+|++|+++..+.|.. ...+|... .+
T Consensus 84 ~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~~-~~ 162 (461)
T cd02750 84 RISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQT-DV 162 (461)
T ss_pred EecHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCCC-CC
Confidence 9999999999999998764 367887776 34556777888999999999998776655422 22233321 23
Q ss_pred CCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH----------
Q 009859 207 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL---------- 270 (523)
Q Consensus 207 ~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l---------- 270 (523)
.++.|+++||+||+||+||.+++|....+++++. ++|+|||+|||+.+.|+..++ ||+|.+.+
T Consensus 163 ~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar-~~GaklividPr~s~ta~~Ad~~l~i~PGtD~al~lal~~~i~~~ 241 (461)
T cd02750 163 PESADWYNADYIIMWGSNVPVTRTPDAHFLTEAR-YNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALALAMAHVIIKE 241 (461)
T ss_pred CChhHHhcCcEEEEECCChHHccCchHHHHHHHH-HCCCEEEEEcCCCCcchhhcCEEeccCCCcHHHHHHHHHHHHHHc
Confidence 4689999999999999999999998888898864 589999999999999998875 67776432
Q ss_pred ------------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCC
Q 009859 271 ------------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI 321 (523)
Q Consensus 271 ------------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~ 321 (523)
+++ +| |+++|+.|+++++++|++|.|..++.+|.+..+++..|+.++|++
T Consensus 242 ~~~d~~fl~~~t~~~~~v~t~e~~~~~-~Gv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~ 320 (461)
T cd02750 242 KLYDEDYLKEYTDLPFLVYTPAWQEAI-TGVPRETVIRLAREFATNGRSMIIVGAGINHWYHGDLCYRALILLLALTGNE 320 (461)
T ss_pred CCccHHHHHHhcCChhhcCCHHHHHHH-HCcCHHHHHHHHHHHHhcCCcEEEeCCCcccccCchHHHHHHHHHHHHhCCC
Confidence 222 24 688999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCC--------C-CCC-CCCceEEEEcccCCcccCc
Q 009859 322 RPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------L-EKL-PNDAFVVYQGHHGDHGVYR 391 (523)
Q Consensus 322 ~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~-~~l-~~~~fvV~~d~~~t~ta~~ 391 (523)
|++|+|+..+ .+++|++|++++||+. . +++ ++++|+|++|+++|+|+++
T Consensus 321 g~~Ggg~~~~---------------------~g~ik~~~~~g~Np~~~~p~~~~~~~~a~~~~ldf~V~~d~~~teTa~~ 379 (461)
T cd02750 321 GKNGGGWAHY---------------------VGQPRVLFVWRGNLFGSSGKGHEYFEDAPEGKLDLIVDLDFRMDSTALY 379 (461)
T ss_pred CCCCCccccC---------------------CCCceEEEEeCCChHhhCcCHhHHHHhhhhccCCEEEEEecCCCccccc
Confidence 9988765321 1348999999999973 1 244 7899999999999999999
Q ss_pred ceEEecCCCCCCCCc-eeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCC-----CCCCCHHHHHHHHHHhCCCC
Q 009859 392 ANVILPASAFSEKEG-TYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR-----LPYDTIGGIRSRIRTVAPNL 465 (523)
Q Consensus 392 ADvvLP~a~~~E~~g-t~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~-----~~~~~~~~i~~~~~~~~p~~ 465 (523)
||||||+++|+|++| ++.+.++++|.++|+++|+||+|+||+|+++||++|+.. +.|....++++|+++.+|.|
T Consensus 380 ADvVLP~~~~~E~~~~~~~~~~~~~~~~~~~i~p~gear~d~~I~~~La~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 459 (461)
T cd02750 380 SDIVLPAATWYEKHDLSTTDMHPFIHPFSPAVDPLWEAKSDWEIFKALAKKVPWRTLTGRQQFYLDHDWFLELGETLPTY 459 (461)
T ss_pred CcEEEecCCCcccCCccccCCCceEEEcccccCCCccCcCHHHHHHHHHHhcCchhhcccchhhhccHHHHHhcccCCCC
Confidence 999999999999999 677889999999999999999999999999999999754 34446679999998888866
No 21
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=100.00 E-value=2.3e-64 Score=527.29 Aligned_cols=364 Identities=28% Similarity=0.424 Sum_probs=303.3
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
+|+|++|+.||+|.+++++|+|+||+|++++++|++++|+||||+++.++ |+||++||+|. +|+|++||||||+++|+
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~~v~~~~~~~~n~g~lC~kg~~~~~~~~~~~Rl~~Pm~R~-~g~~~~isWdeAl~~ia 79 (414)
T cd02772 1 KSVSPHDALGSNLVVHVKNNKVMRVVPRENEAINECWLSDRDRFSYEGLNSEDRLTKPMIKK-DGQWQEVDWETALEYVA 79 (414)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEEcCCCCCCCCCccCcchhhhhhcccCccccCCCeEec-CCceEEecHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999997 89999999998 89999999999999999
Q ss_pred HHHHhcCC----CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhh--hcCcccCCCccccccCCEEEEE
Q 009859 148 EVMLQAKP----EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADL--RSGYIMNTSISGLEKADCFLLV 221 (523)
Q Consensus 148 ~~L~~~~~----~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~di~~ad~il~~ 221 (523)
++|+++++ ++++++.|+..++|+.+++++|++.+|++++++..+.+...... ......+.++.|+++||+||+|
T Consensus 80 ~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~ 159 (414)
T cd02772 80 EGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLGMPIAEISELDRVLVI 159 (414)
T ss_pred HHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCCCCCCcHHHHHhCCEEEEE
Confidence 99998764 68988888888889999999999999999887655443221111 1112335678999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCH----HH---H-------HHH---------HcC--
Q 009859 222 GTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGP----KT---L-------LEI---------AEG-- 276 (523)
Q Consensus 222 G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~----~~---l-------~~~---------~~g-- 276 (523)
|+||.+++|++..+++++.+ +|+||++|||+.+.+... .++++. +. + .+. .+|
T Consensus 160 G~n~~~~~p~~~~~l~~a~~-~g~k~i~idp~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~ 237 (414)
T cd02772 160 GSNLRKEHPLLAQRLRQAVK-KGAKLSAINPADDDFLFP-LSGKAIVAPSALANALAQVAKALAEEKGLAVPDEDAKVEA 237 (414)
T ss_pred CCCccccchHHHHHHHHHHH-cCCEEEEEeCccchhhcc-cccccccCcHHHHHHHHHHHHHHHHhcCcCChHHHhcCCC
Confidence 99999999999999999875 899999999987654322 123221 00 0 010 023
Q ss_pred ---cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCC-CCCCCceeecchhhHHhhHHhcCCCCCcc--
Q 009859 277 ---RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI-RPDWNGLNVLLLNAAQAAALDLGLVPESS-- 350 (523)
Q Consensus 277 ---i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~-~~~g~g~~~l~~~~n~~g~~~~g~~p~~~-- 350 (523)
|+++|+.|+.+++++|++|.+..++.++..+.+++..|+.++|+. +.. .+..|..|...+|..|...
T Consensus 238 ~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~~~~~~-------~~~~n~~g~~~~g~~p~~~~~ 310 (414)
T cd02772 238 SEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGATLGVL-------GEGANSVGAYLAGALPHGGLN 310 (414)
T ss_pred HHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCcCccCC-------CCccchHHHHHhCCCCCCCCC
Confidence 678999999999999999999999999999999999999999873 333 3345666777777766311
Q ss_pred ---ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCc-ceEEecCCCCCCCCceeecCCCceEee
Q 009859 351 ---NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYR-ANVILPASAFSEKEGTYENTEGCTQQT 418 (523)
Q Consensus 351 ---~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~-ADvvLP~a~~~E~~gt~~n~eg~~q~~ 418 (523)
...+++|++|+++.||+. .++|.+++|+|++|+|+|+|+++ ||||||+++|+|++|+|+|.+|++|.+
T Consensus 311 ~~~~~~~~~~~~~v~~~np~~~~p~~~~~~~al~k~~f~V~~d~~~t~ta~~~ADvvLP~~~~~E~~g~~~~~~~~~~~~ 390 (414)
T cd02772 311 AAAMLEQPRKAYLLLNVEPELDCANPAQALAALNQAEFVVALSAFASAALLDYADVLLPIAPFTETSGTFVNLEGRVQSF 390 (414)
T ss_pred HHHHhcccCCEEEEeCCCccccCCCHHHHHHHHhcCCEEEEEeccCCcchhhcCCEEecCCccccCCcCeECCCCcEEee
Confidence 134578999999999963 13578999999999999999996 999999999999999999999999999
Q ss_pred cCccCCCCCCccHHHHHHHHHHHh
Q 009859 419 LPAVPTVGDARDDWKIIRALSEVA 442 (523)
Q Consensus 419 ~~~v~p~ge~r~d~~Il~~La~~l 442 (523)
+|+++|+||+|+||+|+.+|++.+
T Consensus 391 ~~~v~p~ge~r~d~~i~~~La~~~ 414 (414)
T cd02772 391 KGVVKPLGEARPAWKVLRVLGNLL 414 (414)
T ss_pred ccccCCCcccchHHHHHHHHHhhC
Confidence 999999999999999999999764
No 22
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.8e-64 Score=536.13 Aligned_cols=353 Identities=18% Similarity=0.243 Sum_probs=304.3
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC---CCCCeeEcCHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDALA 144 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~~~isWdeAl~ 144 (523)
.|+|++|+.||+|.|+++||+|+||+|++++|+|+|++|.||+++++.+| |+||++||+|+ |+|+|++|||||||+
T Consensus 1 ~t~C~~C~~~C~l~v~v~~g~v~~v~g~~~~p~n~g~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~isWdeAl~ 80 (477)
T cd02759 1 KGTCPGCHSGCGVLVYVKDGKLVKVEGDPNHPTNKGRLCMRGLAAPEIVYHPDRLLYPLKRVGERGENKWERISWDEALD 80 (477)
T ss_pred CccCcCCcCCCCEEEEEECCEEEEEEcCCCCCCCCCccCccccchHhhhcCchhhccCceecCCCCCCcEEEecHHHHHH
Confidence 48999999999999999999999999999999999999999999999997 99999999997 468999999999999
Q ss_pred HHHHHHHhcC----CCCEEEEeC-CCCcHHHHHHHH-HHHHHcCCCccccCCCccchhhhhhc----CcccCCCcccccc
Q 009859 145 VVAEVMLQAK----PEEIVGIAG-RLSDAESMMALK-DFLNRMGSNNVWCEGTGAQSNADLRS----GYIMNTSISGLEK 214 (523)
Q Consensus 145 ~ia~~L~~~~----~~~i~~~~g-~~~~~e~~~~~~-~l~~~lG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~di~~ 214 (523)
+|+++|++++ +++++++.| +..+.|..++++ +|++.+|++|+++..+.|......+. ....+.++.|+++
T Consensus 81 ~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~d~~~ 160 (477)
T cd02759 81 EIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGFGLGYDEPDWEN 160 (477)
T ss_pred HHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhccCCCCCchhhhc
Confidence 9999999864 367877754 666667767666 79999999998887766643221111 1123457899999
Q ss_pred CCEEEEEcCCCCcchh-hHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH-----------------
Q 009859 215 ADCFLLVGTQPRVEAA-MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL----------------- 270 (523)
Q Consensus 215 ad~il~~G~n~~~~~p-~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l----------------- 270 (523)
||+||+||+||.+++| ....+++++. ++|+||++|||+.+.|+..++ ||+|.+.+
T Consensus 161 ad~Il~~G~n~~~~~~~~~~~~~~~ar-~~g~klividpr~s~ta~~Ad~~l~i~PGtD~al~~al~~~i~~~~~~d~~f 239 (477)
T cd02759 161 PECIVLWGKNPLNSNLDLQGHWLVAAM-KRGAKLIVVDPRLTWLAARADLWLPIRPGTDAALALGMLNVIINEGLYDKDF 239 (477)
T ss_pred CCEEEEEccChhhhCcHHHHHHHHHHH-HCCCEEEEECCCCChhhHhhCeeeccCCCcHHHHHHHHHHHHHHCCCcCHHH
Confidence 9999999999999999 8888898875 489999999999999988775 57765432
Q ss_pred -----------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCC
Q 009859 271 -----------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 322 (523)
Q Consensus 271 -----------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~ 322 (523)
+++ +| |+++|++|++++++.|++|.+..++.++.+..+++.+|+.++|+++
T Consensus 240 ~~~~t~g~~~~~~~~~~~t~e~~~~i-tGv~~~~i~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i~ 318 (477)
T cd02759 240 VENWCYGFEELAERVQEYTPEKVAEI-TGVPAEKIRKAARLYATAKPACIQWGLAIDQQKNGTQTSRAIAILRAITGNLD 318 (477)
T ss_pred HHHHhccHHHHHHHHhcCCHHHHHHH-HCcCHHHHHHHHHHHHhCCCeEEEcCCcceeccchHHHHHHHHHHHHHhCCCC
Confidence 111 23 6889999999999999999999999999999999999999999999
Q ss_pred CCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceE
Q 009859 323 PDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANV 394 (523)
Q Consensus 323 ~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADv 394 (523)
++|+++.. +++||++|++++||+. .++|++++|+|++|+++|+|+++|||
T Consensus 319 ~~Gg~~~~----------------------~~~ik~l~v~g~Np~~~~p~~~~~~~al~~~~~vV~~d~~~teTa~~ADv 376 (477)
T cd02759 319 VPGGNLLI----------------------PYPVKMLIVFGTNPLASYADTAPVLEALKALDFIVVVDLFMTPTAMLADI 376 (477)
T ss_pred CCCCccCC----------------------CCCcEEEEEeCCCccccCCCHHHHHHHHhcCCeEEEEecCcCchHhhCCE
Confidence 88765421 3579999999999974 14578899999999999999999999
Q ss_pred EecCCCCCCCCceeecC--CCceEeecCccCCCCCCccHHHHHHHHHHHhCCC
Q 009859 395 ILPASAFSEKEGTYENT--EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR 445 (523)
Q Consensus 395 vLP~a~~~E~~gt~~n~--eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~ 445 (523)
|||+++|+|++|++++. ++++|.++|+|+|+||+|+||+|+++||++||.+
T Consensus 377 VLP~~~~~E~~g~~~~~~~~~~~~~~~~~i~P~ge~r~d~~I~~~La~~lg~~ 429 (477)
T cd02759 377 VLPVAMSLERPGLRGGFEAENFVQLRQKAVEPYGEAKSDYEIVLELGKRLGPE 429 (477)
T ss_pred EecCccccccccccccccccceEEEeccccCCCCCCcCHHHHHHHHHHHhCCC
Confidence 99999999999999987 7999999999999999999999999999999975
No 23
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=7.7e-64 Score=538.74 Aligned_cols=369 Identities=15% Similarity=0.188 Sum_probs=298.8
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
+|+|++|+.||+|.|+++||+|+||+|++++|+|+|++|+||++.++.++ |+||++||+|+ +|+|++|||||||++||
T Consensus 1 ~t~C~~C~~~C~i~v~v~~g~ivkv~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~-~g~~~~isWdeAl~~ia 79 (539)
T cd02762 1 KRACILCEANCGLVVTVEDGRVASIRGDPDDPLSKGYICPKAAALGDYQNDPDRLRTPMRRR-GGSFEEIDWDEAFDEIA 79 (539)
T ss_pred CccCCCcccCCCeEEEEECCEEEEEECCCCCCCCCCccChhhhhhhhhccCchhccCCcEec-CCceeEeCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999886 99999999999 68999999999999999
Q ss_pred HHHHhcC----CCCEEEEeCCCCcH-HHHH-HHHHHHHHcCCCccccCCCccchh------hhhhcCcccCCCccccccC
Q 009859 148 EVMLQAK----PEEIVGIAGRLSDA-ESMM-ALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKA 215 (523)
Q Consensus 148 ~~L~~~~----~~~i~~~~g~~~~~-e~~~-~~~~l~~~lG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~a 215 (523)
++|++++ +++|+++.|+.... |..+ ..++|++.+|++|++.....|... ..+|.. .+.++.|+++|
T Consensus 80 ~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~~~~D~~~a 157 (539)
T cd02762 80 ERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATADQKPGHFWSGLMFGHP--GLHPVPDIDRT 157 (539)
T ss_pred HHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHhcCCC--CCCCchhhhhC
Confidence 9999875 36888887754433 3333 446788899999987765555322 223332 23478999999
Q ss_pred CEEEEEcCCCCcchhhHHH------HHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH-------------
Q 009859 216 DCFLLVGTQPRVEAAMVNA------RIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------- 270 (523)
Q Consensus 216 d~il~~G~n~~~~~p~~~~------~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l------------- 270 (523)
|+||+||+||.+++|.++. +++++ +++|+|||+|||+.+.|+..++ ||+|.+.+
T Consensus 158 d~il~~G~N~~~s~~~~~~~~~~~~~~~~a-~~~G~kliviDPr~t~ta~~AD~~l~irPGtD~aL~~a~~~~ii~~~~~ 236 (539)
T cd02762 158 DYLLILGANPLQSNGSLRTAPDRVLRLKAA-KDRGGSLVVIDPRRTETAKLADEHLFVRPGTDAWLLAAMLAVLLAEGLT 236 (539)
T ss_pred CEEEEEecChHhhCCccccccCHHHHHHHH-HhCCCEEEEECCCCchhhHhcCEeeCcCCCcHHHHHHHHHHHHHHCCCC
Confidence 9999999999999887654 55554 4589999999999999998875 68876431
Q ss_pred ---------------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHc
Q 009859 271 ---------------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKG 318 (523)
Q Consensus 271 ---------------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~ 318 (523)
+++ +| |+++|++|+++++++|++|.|++++.+|....+++.+|+.+|
T Consensus 237 D~~fi~~~t~Gf~~~~~~~~~~t~e~~~~~-tGv~~~~I~~lA~~~a~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~~lt 315 (539)
T cd02762 237 DRRFLAEHCDGLDEVRAALAEFTPEAYAPR-CGVPAETIRRLAREFAAAPSAAVYGRLGVQTQLFGTLCSWLVKLLNLLT 315 (539)
T ss_pred ChHHHHHHcCcHHHHHHHHhcCCHHHHHHH-HCcCHHHHHHHHHHHhcCCceEEEECcccccccCcHHHHHHHHHHHHHh
Confidence 111 24 689999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeecc-----hhhHHhh----HHh--c-------CCCCCc-------cccccCccEEEEEcCCCCC-----
Q 009859 319 NVIRPDWNGLNVLL-----LNAAQAA----ALD--L-------GLVPES-------SNSIESAKFVYLMGADDVD----- 368 (523)
Q Consensus 319 g~~~~~g~g~~~l~-----~~~n~~g----~~~--~-------g~~p~~-------~~~~~~i~~l~~~g~n~~~----- 368 (523)
|++|++|+|+.... +..+... .+. . +..|.. ...+++||++|++++||+.
T Consensus 316 G~~g~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ik~l~~~~~Np~~~~p~~ 395 (539)
T cd02762 316 GNLDRPGGAMFTTPALDLVGQTSGRTIGRGEWRSRVSGLPEIAGELPVNVLAEEILTDGPGRIRAMIVVAGNPVLSAPDG 395 (539)
T ss_pred CCCCCCCCccCCCCCCccccCCCcccccccccccccCCCCcccccCcHHHHHHHHhcCCCCceEEEEEeCCCccccCCCH
Confidence 99999998864321 1111100 000 0 011100 0136789999999999975
Q ss_pred ---CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCce-eecC---CCceEeecCccCCCCCCccHHHHHHHHHHH
Q 009859 369 ---LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGT-YENT---EGCTQQTLPAVPTVGDARDDWKIIRALSEV 441 (523)
Q Consensus 369 ---~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt-~~n~---eg~~q~~~~~v~p~ge~r~d~~Il~~La~~ 441 (523)
.++|++++|+|++|+|+|+|+++||||||+++|+|++|. +.+. ++++|..+|+++|+||+|+||+|+++||++
T Consensus 396 ~~~~~al~~ldf~V~~D~~~teTa~~ADiVLPa~~~~E~~d~~~~~~~~~~~~~~~~~~vi~P~ge~k~d~~I~~~La~r 475 (539)
T cd02762 396 ARLEAALGGLEFMVSVDVYMTETTRHADYILPPASQLEKPHATFFNLEFPRNAFRYRRPLFPPPPGTLPEWEILARLVEA 475 (539)
T ss_pred HHHHHHHhcCCeEEEeecccCcchhhCCEEecCCCccccCCccccccccceeEEEEeccccCCCCCCCcHHHHHHHHHHH
Confidence 246889999999999999999999999999999999984 4443 478999999999999999999999999999
Q ss_pred h
Q 009859 442 A 442 (523)
Q Consensus 442 l 442 (523)
|
T Consensus 476 l 476 (539)
T cd02762 476 L 476 (539)
T ss_pred H
Confidence 9
No 24
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1e-63 Score=526.92 Aligned_cols=354 Identities=17% Similarity=0.189 Sum_probs=297.2
Q ss_pred eeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC---CCCCeeEcCHHHHH
Q 009859 68 TETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDAL 143 (523)
Q Consensus 68 ~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~~~isWdeAl 143 (523)
++|+|++|+.||++.|+++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|+ |+|+|++|||||||
T Consensus 1 ~~t~C~~C~~~C~l~v~v~dG~v~~v~g~~~~p~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~iSWdeAl 80 (454)
T cd02755 1 VPSICEMCSSRCGILARVEDGRVVKIDGNPLSPLSRGKLCARGNAGIQLLYDPDRLKKPLIRVGERGEGKFREASWDEAL 80 (454)
T ss_pred CCccCcCcccCCCcEEEEECCEEEEEECCCCCCCCCccCCccchhhHhhhCCcchhcCCeeecCCCCCCeEEEeCHHHHH
Confidence 469999999999999999999999999999999999999999999999997 99999999997 47899999999999
Q ss_pred HHHHHHHHhcCC----CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcC----cccCCCccccccC
Q 009859 144 AVVAEVMLQAKP----EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSG----YIMNTSISGLEKA 215 (523)
Q Consensus 144 ~~ia~~L~~~~~----~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~di~~a 215 (523)
++|+++|+++++ ++++++.+... ..+++++|++.+|++|++...+.|......+.. ...+.+..|+++|
T Consensus 81 ~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~d~~~a 157 (454)
T cd02755 81 QYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPDFENA 157 (454)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhccCCCCCcchhcC
Confidence 999999998763 45666555433 356789999999999988766666433211111 1123468899999
Q ss_pred CEEEEEcCCCCcchhh-HHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH------------------
Q 009859 216 DCFLLVGTQPRVEAAM-VNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------------ 270 (523)
Q Consensus 216 d~il~~G~n~~~~~p~-~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l------------------ 270 (523)
|+||+||+|+.++++. ...++++++ ++|+|+++|||+.+.|+..++ ||+|.+.+
T Consensus 158 d~il~~G~n~~~~~~~~~~~~~~~a~-~~g~kiivIdPr~t~ta~~AD~~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi 236 (454)
T cd02755 158 RYIILFGRNLAEAIIVVDARRLMKAL-ENGAKVVVVDPRFSELASKADEWIPIKPGTDLAFVLALIHVLISENLYDAAFV 236 (454)
T ss_pred CEEEEECcCcccccccHHHHHHHHHH-HCCCeEEEECCCCChhhHhhCEecCCCCCcHHHHHHHHHHHHHHcCCccHHHH
Confidence 9999999999999754 578888875 489999999999999998875 57765421
Q ss_pred ----------------------HHHHcC-----cHHHHHHHhc-CCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCC
Q 009859 271 ----------------------LEIAEG-----RHPFFSAISN-AKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 322 (523)
Q Consensus 271 ----------------------~~~~~g-----i~~~a~~l~~-a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~ 322 (523)
+++ +| |+++|++|++ +++++|++|.+..++.+|.+..+++..|+.++|+++
T Consensus 237 ~~~t~g~~~~~~~~~~~t~e~~~~~-~gv~~~~i~~~A~~~a~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ltG~ig 315 (454)
T cd02755 237 EKYTNGFELLKAHVKPYTPEWAAQI-TDIPADTIRRIAREFAAAAPHAVVDPGWRGTFYSNSFQTRRAIAIINALLGNID 315 (454)
T ss_pred HHHccCHHHHHHHHhcCCHHHHHHH-HCCCHHHHHHHHHHHHhhCCCEEEECCccccccCchHHHHHHHHHHHHHhCCCC
Confidence 112 24 6889999998 566788889999999999999999999999999999
Q ss_pred CCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceE
Q 009859 323 PDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANV 394 (523)
Q Consensus 323 ~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADv 394 (523)
++|+++... + ..++++|++|++++||+. .++|++++|+|++|+|+|+|+++|||
T Consensus 316 ~~Gg~~~~~------------~------~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~l~f~V~~d~~~teTa~~ADi 377 (454)
T cd02755 316 KRGGLYYAG------------S------AKPYPIKALFIYRTNPFHSMPDRARLIKALKNLDLVVAIDILPSDTALYADV 377 (454)
T ss_pred CCCCcccCC------------C------CCCCCceEEEEcCCCcccccCCHHHHHHHHhcCCeEEEEeCCcCchHhhCCE
Confidence 988543210 0 025789999999999974 14688999999999999999999999
Q ss_pred EecCCCCCCCCceeecC---CCceEeecCccCCCCCCccHHHHHHHHHHHhCC
Q 009859 395 ILPASAFSEKEGTYENT---EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 444 (523)
Q Consensus 395 vLP~a~~~E~~gt~~n~---eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~ 444 (523)
|||+++|+|++|++++. +++++..+|+++|+||+|+||+|+.+||++||+
T Consensus 378 VLP~~~~~E~~~~~~~~~~~~~~~~~~~~~v~P~ge~r~d~~i~~~la~~lg~ 430 (454)
T cd02755 378 ILPEATYLERDEPFSDKGGPAPAVATRQRAIEPLYDTRPGWDILKELARRLGL 430 (454)
T ss_pred EeCCCccccccccccccCCCcceeEEecccCCCCcCCcCHHHHHHHHHHHhCC
Confidence 99999999999999885 578999999999999999999999999999996
No 25
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=100.00 E-value=2.4e-63 Score=557.17 Aligned_cols=383 Identities=18% Similarity=0.173 Sum_probs=314.8
Q ss_pred ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC------CCCeeEc
Q 009859 65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA------DGRFKAV 137 (523)
Q Consensus 65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g------~g~~~~i 137 (523)
.++++|+|++|+.||+|.++++||+|+||+|++++++|+|++|.||++.++.+| |+||++||+|++ +|+|++|
T Consensus 40 ~~~~~s~C~~C~~~C~l~~~v~dG~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~~g~~~g~g~~~~i 119 (830)
T TIGR01706 40 IKWDKAPCRFCGTGCGVMVGVKDGRVVATQGDPAAPVNRGLNCIKGYFLSKIMYGQDRLTQPLLRMKDGKYDKDGEFTPV 119 (830)
T ss_pred ceEEEEECCCCCCCCCeEEEEECCEEEEeecCCCCCCCCCccCcchhhhhhhcCCcchhcCCEEecCCCCcccCCCeeEc
Confidence 456889999999999999999999999999999999999999999999999997 999999999963 5899999
Q ss_pred CHHHHHHHHHHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCccchhh------hhhcCcccC
Q 009859 138 NWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSNA------DLRSGYIMN 206 (523)
Q Consensus 138 sWdeAl~~ia~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~~------~~~~~~~~~ 206 (523)
||||||++||++|++++ +++|++++++..+.|+.+++++|++ .+|++|++...+.|.... .+|... ..
T Consensus 120 SWDeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~~~~~~~~~~~~~gt~~~~~~~~~c~~~~~~~~~~~~G~~~-~~ 198 (830)
T TIGR01706 120 SWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWEGYAALKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGMDE-PM 198 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHHHHHHHHHHHhhcCCCcccCCcccccchhHHHHHHhcCCCC-CC
Confidence 99999999999999874 3788888777777888888888887 589999987777664322 233221 12
Q ss_pred CCccccccCCEEEEEcCCCCcchhhHHHHHHHHHH-hCCCeEEEEcCCCCCCcchhc------cCCCHHH----------
Q 009859 207 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR-ANNAKVGYIGPATDLNYDHQH------LGTGPKT---------- 269 (523)
Q Consensus 207 ~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~-~~g~klv~idp~~~~t~~~a~------~g~~~~~---------- 269 (523)
.++.|+++||+||+||.||.+++|+...++.++++ ++|+|||+|||+.+.|+..++ ||+|.+.
T Consensus 199 ~~~~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l~irPGTD~AL~lam~~~ii~ 278 (830)
T TIGR01706 199 GCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYIIQ 278 (830)
T ss_pred CCHhHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeeeccCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999998889887643 479999999999999988764 5665431
Q ss_pred -------------------------------------------------HHHHH--------------cC-----cHHHH
Q 009859 270 -------------------------------------------------LLEIA--------------EG-----RHPFF 281 (523)
Q Consensus 270 -------------------------------------------------l~~~~--------------~g-----i~~~a 281 (523)
++++. +| |+++|
T Consensus 279 ~~~~D~~Fv~~~t~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~tpe~aa~itGVpa~~I~~lA 358 (830)
T TIGR01706 279 NNAVNMDFVNKHTVFKTGATDIGYGLRPDHPLEKAAKNADDPAATSLSTFEEFKKFVAPYTLEKTSELSGVPKAKLEQLA 358 (830)
T ss_pred CCCccHHHHHHHhccccccccccccccccccccccccccccccccccCcHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHH
Confidence 11111 24 78999
Q ss_pred HHHhcCC-CcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhH-HhcCC--------------
Q 009859 282 SAISNAK-NPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLGL-------------- 345 (523)
Q Consensus 282 ~~l~~a~-~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~-~~~g~-------------- 345 (523)
++|++++ +++|++|.|..+|.+|.+..+++.+|+.+||++|++|+|+..+.+..|.+|. .++|.
T Consensus 359 ~~~a~~~~~~~i~~g~G~~~~~~g~~~~rai~~L~altGnig~~Ggg~~~~~g~~~~~g~~~~~g~~~~~~p~~~~~~~~ 438 (830)
T TIGR01706 359 ELYADPNRKVMSLWTMGFNQHTRGVWANNMVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNP 438 (830)
T ss_pred HHHhccCCCEEEEEcchhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCcCcCcCCcCcCcchhhhhhccccCCCCcCCCCH
Confidence 9999886 4667789999999999999999999999999999999988776655554431 11110
Q ss_pred ----------------CC---Ccc-------ccccCccEEEEEcCCCCC--C-------CCCC-CCceEEEEcccCCccc
Q 009859 346 ----------------VP---ESS-------NSIESAKFVYLMGADDVD--L-------EKLP-NDAFVVYQGHHGDHGV 389 (523)
Q Consensus 346 ----------------~p---~~~-------~~~~~i~~l~~~g~n~~~--~-------~~l~-~~~fvV~~d~~~t~ta 389 (523)
.| +.. ...++||++|++|+||+. + +++. +.+|+|++|+|+|+|+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~~a~~~~~df~Vv~D~f~teTa 518 (830)
T TIGR01706 439 KHREIAEKIWKIPAGTIPEKPGLHAVAQDRALKDGKLNFYWVQVNNNMQAGPNINEERLPGYRNPDNFIVVSDAYPTVTA 518 (830)
T ss_pred HHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEEccCChhhcCccchHHHHHHHhCCCCeEEEecCccCcch
Confidence 11 000 135789999999999974 1 1233 3579999999999999
Q ss_pred CcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 009859 390 YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 448 (523)
Q Consensus 390 ~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~ 448 (523)
+|||||||+++|+|++|+++|.++++|+.+++|+|+||+|+||+|+.+||++||.+..|
T Consensus 519 ~~ADiVLPa~t~~E~~~~~~~~~r~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~ 577 (830)
T TIGR01706 519 LAADLILPSAMWVEKEGAYGNAERRTQVWHQQVLAPGEARSDLWQLVEFSKRFKTEEVW 577 (830)
T ss_pred hhCCEEeCCCcccccCceEEcCCceEEeeccccCCCcccchHHHHHHHHHHHhCcCccC
Confidence 99999999999999999999999999999999999999999999999999999986444
No 26
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=100.00 E-value=3.5e-63 Score=556.87 Aligned_cols=384 Identities=18% Similarity=0.186 Sum_probs=314.9
Q ss_pred cceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC------CCCeeE
Q 009859 64 ELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA------DGRFKA 136 (523)
Q Consensus 64 el~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g------~g~~~~ 136 (523)
+.++++|+|++|+.||++.++++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|++ +|+|++
T Consensus 39 ~~~~~~s~C~~C~~~C~l~~~v~dg~i~~v~g~~~~p~n~G~lC~kG~~~~~~~y~~~Rl~~Pl~R~~rG~~~~~g~~~~ 118 (830)
T PRK13532 39 AIKWDKAPCRFCGTGCGVLVGTKDGRVVATQGDPDAPVNRGLNCIKGYFLSKIMYGKDRLTQPLLRMKDGKYDKEGEFTP 118 (830)
T ss_pred CceEEeEECCCCcCCCCeEEEEECCEEEEEECCCCCCCCCCccCccccchhhccCCcccccCCEEecCCCCcccCCCeEE
Confidence 4668899999999999999999999999999999999999999999999999997 999999999963 689999
Q ss_pred cCHHHHHHHHHHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCccchhh------hhhcCccc
Q 009859 137 VNWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSNA------DLRSGYIM 205 (523)
Q Consensus 137 isWdeAl~~ia~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~~------~~~~~~~~ 205 (523)
|||||||++||++|++++ +++|+++.++..+.|+.+++++|++ .+|++|+++..+.|.... .+|... .
T Consensus 119 isWdeAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~G~~~-~ 197 (830)
T PRK13532 119 VSWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEGYAASKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDE-P 197 (830)
T ss_pred ecHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHHHHHHHHHHhccCCCcccCCccccchhHHHHHHHhhCCCC-C
Confidence 999999999999998864 3788888888888888888899987 589999987766664322 233211 1
Q ss_pred CCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHH-hCCCeEEEEcCCCCCCcchhc------cCCCHHH---------
Q 009859 206 NTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR-ANNAKVGYIGPATDLNYDHQH------LGTGPKT--------- 269 (523)
Q Consensus 206 ~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~-~~g~klv~idp~~~~t~~~a~------~g~~~~~--------- 269 (523)
..++.|+++||+||+||+||.+++|+...++.+++. ++|+|||+|||+.+.|+..++ ||+|.+.
T Consensus 198 ~~~~~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~irPGtD~al~~am~~~ii 277 (830)
T PRK13532 198 MGCYDDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFTPQTDLAILNYIANYII 277 (830)
T ss_pred CCCHHHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccCCCCcHHHHHHHHHHHH
Confidence 236789999999999999999999999888876643 479999999999999988765 5665431
Q ss_pred --------------------------------------------------HHHHH--------------cC-----cHHH
Q 009859 270 --------------------------------------------------LLEIA--------------EG-----RHPF 280 (523)
Q Consensus 270 --------------------------------------------------l~~~~--------------~g-----i~~~ 280 (523)
++++. +| |+++
T Consensus 278 ~~~~~D~~Fv~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~~f~~l~~~~~~~tpe~aa~itGV~a~~I~~l 357 (830)
T PRK13532 278 QNNAVNWDFVNKHTNFRKGATDIGYGLRPTHPLEKAAKNPGTAGKSEPISFEEFKKFVAPYTLEKTAKMSGVPKEQLEQL 357 (830)
T ss_pred HCCcccHHHHHHHhccccccccccccccccccccccccccccccccccchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHH
Confidence 11111 24 6899
Q ss_pred HHHHhcCCC-cEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhH-HhcCC-------------
Q 009859 281 FSAISNAKN-PVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLGL------------- 345 (523)
Q Consensus 281 a~~l~~a~~-~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~-~~~g~------------- 345 (523)
|++|+++++ +++++|.|..+|.+|.+..+++.+|+.+||++|++|+|+..+.+..|.+|. .++|.
T Consensus 358 A~~~a~~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~altGnig~~Ggg~~~~~g~~~~~g~~~~~~~~~~~~p~~~~~~~ 437 (830)
T PRK13532 358 AKLYADPNRKVVSFWTMGFNQHTRGVWANNLVYNIHLLTGKISTPGNGPFSLTGQPSACGTAREVGTFSHRLPADMVVTN 437 (830)
T ss_pred HHHHhccCCcEEEEEccccccchhHHHHHHHHHHHHHHhCCCCCCCCCcCCCCCCcccccchhhhhhCcccCCCCCcCCC
Confidence 999998875 677789999999999999999999999999999999987665544443331 11110
Q ss_pred -----------------CCC---c-------cccccCccEEEEEcCCCCCC---------CCCCCC-ceEEEEcccCCcc
Q 009859 346 -----------------VPE---S-------SNSIESAKFVYLMGADDVDL---------EKLPND-AFVVYQGHHGDHG 388 (523)
Q Consensus 346 -----------------~p~---~-------~~~~~~i~~l~~~g~n~~~~---------~~l~~~-~fvV~~d~~~t~t 388 (523)
.|. . ....++||++|++++||+.. +++++. +|+|++|+|+|+|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~~al~~~~~f~Vv~D~~~teT 517 (830)
T PRK13532 438 PKHREIAEKIWKLPEGTIPPKPGYHAVAQDRMLKDGKLNAYWVMCNNNMQAGPNINEERLPGWRNPDNFIVVSDPYPTVS 517 (830)
T ss_pred HHHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEEcCCCccccCcCccHHHHHHHhCCCCCEEEECCcCCcc
Confidence 110 0 01357899999999999641 234554 6999999999999
Q ss_pred cCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 009859 389 VYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 448 (523)
Q Consensus 389 a~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~ 448 (523)
+++||||||+++|+|++|++.|.++++|..+++|+|+||+|+||+|+.+||++||++..|
T Consensus 518 a~~ADiVLPaat~~E~~~~~~~~~~~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~ 577 (830)
T PRK13532 518 ALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSDLWQLVEFSKRFKTEEVW 577 (830)
T ss_pred hhhCCEEeCCCcccccCcceecccceEEEecccCCCCcccchHHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999986443
No 27
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=3.4e-62 Score=527.99 Aligned_cols=388 Identities=16% Similarity=0.170 Sum_probs=304.7
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC---CCCCeeEcCHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDALA 144 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~~~isWdeAl~ 144 (523)
.|+|++|++||+|.|+++||+|+||+|++++|+|+|++|.||+++++.+| |+||++||+|+ |+|+|++|||||||+
T Consensus 1 ~T~C~~C~~gCgi~v~v~dG~v~~I~gn~~~p~n~G~lC~KG~a~~~~vyspdRL~~PL~R~g~RG~g~f~~ISWDEAld 80 (679)
T cd02763 1 TTTCYMCACRCGIRVHLRDGKVRYIKGNPDHPLNKGVICAKGSSGIMKQYSPARLTKPLLRKGPRGSGQFEEIEWEEAFS 80 (679)
T ss_pred CccCCCCcCCCCeEEEEECCEEEEEEcCCCCCccccccChhhhhHHHhhcCcchhcCCEEeccCCCCCceEEeCHHHHHH
Confidence 48999999999999999999999999999999999999999999999997 99999999997 368999999999999
Q ss_pred HHHHHHHhcC---CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhh------hhhcCcccCCCccccccC
Q 009859 145 VVAEVMLQAK---PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNA------DLRSGYIMNTSISGLEKA 215 (523)
Q Consensus 145 ~ia~~L~~~~---~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~------~~~~~~~~~~~~~di~~a 215 (523)
+||++|++++ +++++++.|+... .++.++|++.+|++|++.+.+.|.... .+|...+ ..+..|+++|
T Consensus 81 ~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~~~~~G~~~~-~~~~~D~~~A 156 (679)
T cd02763 81 IATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGGSFW-EFGGPDLEHT 156 (679)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHHhcCCCCcCCCCCcchHHHHHHHHHhhCCCCC-CCChhHHHhC
Confidence 9999999875 3678888775432 456788999999999988877774332 2333222 2357899999
Q ss_pred CEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHH--------------------
Q 009859 216 DCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT-------------------- 269 (523)
Q Consensus 216 d~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~-------------------- 269 (523)
|+||+||+|+..+.+.+..++++++ ++|+|||+|||+.+.|+..++ ||+|...
T Consensus 157 d~Ivl~G~n~~~~~~p~~~~i~~ak-~~GaKlIvIDPr~t~ta~~AD~wl~irPGTD~aL~lal~~~Li~~g~~D~~Fl~ 235 (679)
T cd02763 157 KYFMMIGVAEDHHSNPFKIGIQKLK-RRGGKFVAVNPVRTGYAAIADEWVPIKPGTDGAFILALAHELLKAGLIDWEFLK 235 (679)
T ss_pred CEEEEECCCCcccCchHHHHHHHHH-hCCCcEEEEcCcCCcchHhhCeecCcCCCcHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 9999999998765444566777765 489999999999999988775 5776542
Q ss_pred ---------------HHHHHcC-----cHHHHHHHhcCC------------------------CcEE-EEcCCcccccCH
Q 009859 270 ---------------LLEIAEG-----RHPFFSAISNAK------------------------NPVI-IVGAGLFERKDK 304 (523)
Q Consensus 270 ---------------l~~~~~g-----i~~~a~~l~~a~------------------------~~~i-i~g~~~~~~~~~ 304 (523)
++++ +| |+++|++|++++ ++++ ..+.|+.+|.+|
T Consensus 236 ~~t~g~~l~~ytpe~aa~i-tGV~ae~I~~lA~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~pv~~~~~~G~~~~~nG 314 (679)
T cd02763 236 RYTNAAELVDYTPEWVEKI-TGIPADTIRRIAKELGVTARDQPIELPIAWTDVWGRKHEKITGRPVSFHAMRGIAAHSNG 314 (679)
T ss_pred HHcCcHHhhcCCHHHHHHH-HCcCHHHHHHHHHHHHhcccccccccccccccccccccccccCcceEEeccccccccccH
Confidence 2222 24 789999999763 3444 456799999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCceee--c--c-----hhhHHh-hHHh--------cCC---------------------
Q 009859 305 DAIFSTVEAIAKKGNVIRPDWNGLNV--L--L-----LNAAQA-AALD--------LGL--------------------- 345 (523)
Q Consensus 305 ~~~~~~~~~L~~~~g~~~~~g~g~~~--l--~-----~~~n~~-g~~~--------~g~--------------------- 345 (523)
.+..+++.+|+.+||+++++|+++.. . . ...+.. +..+ .|+
T Consensus 315 ~~~~rAi~~L~aLtGnig~pGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~r~~~~ 394 (679)
T cd02763 315 FQTIRALFVLMMLLGTIDRPGGFRHKPPYPRHIPPLPKPPKIPSADKPFTPLYGPPLGWPASPDDLLVDEDGNPLRIDKA 394 (679)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccCCCCcccccccccccccccccccccccccccccCCCCchhccccccccchhhccc
Confidence 99999999999999999999864321 1 0 000100 0000 000
Q ss_pred ----CCCcc-------------ccccCccEEEEEcCCCC-C--------CCCCC--------CCceEEEEcccCCcccCc
Q 009859 346 ----VPESS-------------NSIESAKFVYLMGADDV-D--------LEKLP--------NDAFVVYQGHHGDHGVYR 391 (523)
Q Consensus 346 ----~p~~~-------------~~~~~i~~l~~~g~n~~-~--------~~~l~--------~~~fvV~~d~~~t~ta~~ 391 (523)
.|... ..+++||++|++++||+ . .++|+ +++|+|++|+|+|+|+++
T Consensus 395 ~~~~~p~~~~gl~~~~i~~~~~g~py~Ikal~i~~~Np~~~s~pn~~~v~eaL~~~d~~~~~kl~flVv~D~f~teTa~~ 474 (679)
T cd02763 395 YSWEYPLAAHGCMQNVITNAWRGDPYPIDTLMIYMANMAWNSSMNTPEVREMLTDKDASGNYKIPFIIVCDAFYSEMVAF 474 (679)
T ss_pred cccccCccccchHHHHHHHhhcCCCCCceEEEEcCCCcccccCCCHHHHHHHHhccccccccccCeEEEEeCCCChhhhh
Confidence 00000 12356999999999997 2 13455 678999999999999999
Q ss_pred ceEEecCCCCCCCCceeecCCCceE--------eecCccCCCCCCccHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhC
Q 009859 392 ANVILPASAFSEKEGTYENTEGCTQ--------QTLPAVPTVGDARDDWKIIRALSEVAGMR-LPYDTIGGIRSRIRTVA 462 (523)
Q Consensus 392 ADvvLP~a~~~E~~gt~~n~eg~~q--------~~~~~v~p~ge~r~d~~Il~~La~~lg~~-~~~~~~~~i~~~~~~~~ 462 (523)
||||||+++|+|++|++++.+++++ ..+|+|+|+||+|+||+|+.+||++||++ +.+++.++++++..+.+
T Consensus 475 ADvVLP~~t~lEr~~~~~~~~r~~~~~~~~~~~~r~pvi~P~gear~d~eI~~~LA~rLG~~~f~~~~~~~~~~~~~~~~ 554 (679)
T cd02763 475 ADLVLPDTTYLERHDAMSLLDRPISEADGPVDAIRVPIVEPKGDVKPFQEVLIELGTRLGLPGFTNEDGTRKYRDYPDFI 554 (679)
T ss_pred CCEEecCCCccccccccccccccccccccchhhhcccccCCCcCCcCHHHHHHHHHHHhCCCccccCChhHHhhhHHHHH
Confidence 9999999999999999988776544 36889999999999999999999999998 55678888888876644
No 28
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.3e-61 Score=528.68 Aligned_cols=404 Identities=16% Similarity=0.155 Sum_probs=312.1
Q ss_pred eeeecc-CCCCCcEEEEEECCEEEEEecCCCCCCC----ccccccccccccCCCC-CCCCCCcEEeCC---CCCeeEcCH
Q 009859 69 ETIDVT-DAVGSNIRIDSRGPEVMRILPRLNEDIN----EEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNW 139 (523)
Q Consensus 69 ~siC~~-C~~gC~i~v~vr~g~v~rv~~~~~~~~n----~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g---~g~~~~isW 139 (523)
.|+|++ |+.+|++.++|+||+|+||+|++++|+| .+++|.||++.++.+| |+||++||+|+| +|+|++|||
T Consensus 1 ~~~C~~~C~~~C~l~v~v~~G~i~~v~g~~~~p~~~g~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~isW 80 (617)
T cd02770 1 WSACTVNCGGRCPLKAHVKDGVITRIETDDTGDDDPGFHQIRACLRGRSQRKRVYNPDRLKYPMKRVGKRGEGKFVRISW 80 (617)
T ss_pred CCccCCccCCCCceEEEEECCEEEEEeCCCCCCcccccCCCCcChhhhhhhhhhcChhHhcCCceecCcCCCCCeEEecH
Confidence 378987 9999999999999999999999999865 5579999999999997 999999999973 689999999
Q ss_pred HHHHHHHHHHHHhcCC----CCEEEEeCC-CCc--HHHHHHHHHHHHHcCCCccccCCCccchh------hhhhcCcccC
Q 009859 140 RDALAVVAEVMLQAKP----EEIVGIAGR-LSD--AESMMALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYIMN 206 (523)
Q Consensus 140 deAl~~ia~~L~~~~~----~~i~~~~g~-~~~--~e~~~~~~~l~~~lG~~~~~~~~~~~~~~------~~~~~~~~~~ 206 (523)
||||++||++|+++++ ++|+++.|. ..+ .+....+.+|++.+|+.+ .+..+.|... ..+|... .+
T Consensus 81 DeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~c~~~~~~~~~~~~G~~~-~~ 158 (617)
T cd02770 81 DEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYL-NYYGTYSWAQITTATPYTYGAAA-SG 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCcc-CCCCCccHhHHhhhhceEEecCC-CC
Confidence 9999999999998764 577665543 222 233567788999898643 3333444222 2233221 23
Q ss_pred CCccccccCCEEEEEcCCCCcchhh---HHHHHHHHHHhCCCeEEEEcCCCCCCcc-hhc------cCCCHHH-------
Q 009859 207 TSISGLEKADCFLLVGTQPRVEAAM---VNARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGPKT------- 269 (523)
Q Consensus 207 ~~~~di~~ad~il~~G~n~~~~~p~---~~~~lr~a~~~~g~klv~idp~~~~t~~-~a~------~g~~~~~------- 269 (523)
.++.|+++||+||+||+||..++|. ...++++++ ++|+|||+||||.+.|+. .++ ||+|.+.
T Consensus 159 ~~~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~-~~G~klivIDPr~t~tA~~~AD~~i~irPGTD~AL~lam~~~ 237 (617)
T cd02770 159 SSLDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAK-KAGAKFIVIDPRYTDTAVTLADEWIPIRPGTDAALVAAMAYV 237 (617)
T ss_pred CCHHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHH-HcCCeEEEECCCCCccccccCCEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999999874 456777765 499999999999999986 564 5666432
Q ss_pred ----------------------------------------------------HHHHHcC-----cHHHHHHHhcCCCcEE
Q 009859 270 ----------------------------------------------------LLEIAEG-----RHPFFSAISNAKNPVI 292 (523)
Q Consensus 270 ----------------------------------------------------l~~~~~g-----i~~~a~~l~~a~~~~i 292 (523)
++++ +| |+++|++|+++++++|
T Consensus 238 ii~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe~a~~i-tGV~ae~I~~lA~~~a~~~~~~i 316 (617)
T cd02770 238 MITENLHDQAFLDRYCVGFDAEHLPEGAPPNESYKDYVLGTGYDGTPKTPEWASEI-TGVPAETIRRLAREIATTKPAAI 316 (617)
T ss_pred HHHCCCccHHHHHHhccCCCcccCcccCCcccchHHHhcCcccCCCcCCHHHHHHH-HCcCHHHHHHHHHHHHhCCCcEE
Confidence 2222 24 7899999999999999
Q ss_pred EEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhH---------------------HhcCC-CCC--
Q 009859 293 IVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA---------------------LDLGL-VPE-- 348 (523)
Q Consensus 293 i~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~---------------------~~~g~-~p~-- 348 (523)
++|.|++++.+|.+..+++.+|++++|++|++|+|++...+..+.... ...|- .+.
T Consensus 317 ~~g~g~~~~~~g~~~~~ai~~L~altGnig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (617)
T cd02770 317 LQGWGPQRHANGEQAARAIMMLAAMTGNVGIPGGNTGARPGGSAYNGAGLPAGKNPVKTSIPCFMWTDAIERGEEMTADD 396 (617)
T ss_pred EecccHHHHhhhhHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCCCcccCCCCCCcccccccHHHHHHHHHCCCceeccC
Confidence 999999999999999999999999999999999887654332221100 00000 000
Q ss_pred -----ccccccCccEEEEEcCCCC-C-C-------CCCC----CCceEEEEcccCCcccCcceEEecCCCCCCCCceeec
Q 009859 349 -----SSNSIESAKFVYLMGADDV-D-L-------EKLP----NDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYEN 410 (523)
Q Consensus 349 -----~~~~~~~i~~l~~~g~n~~-~-~-------~~l~----~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n 410 (523)
....+++||++|++++||+ . . +++. |++|+|++|+|+|+|+++||||||+++|+|++|++++
T Consensus 397 ~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~kldf~Vv~D~~~teTa~~ADiVLPa~t~~E~~~~~~~ 476 (617)
T cd02770 397 GGVKGADKLKSNIKMIWNYAGNTLINQHSDDNNTTRALLDDESKCEFIVVIDNFMTPSARYADILLPDTTELEREDIVLT 476 (617)
T ss_pred CCcccccccCCCcEEEEECCCCchhhcCccHHHHHHHHhcccccCCEEEEeccccCchhhhhheecccCcHHhhcccccc
Confidence 0002358999999999997 3 1 1233 5699999999999999999999999999999999887
Q ss_pred CC----CceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHhC----CCCCCccccCCCCC
Q 009859 411 TE----GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRTVA----PNLLHVDEREPATL 476 (523)
Q Consensus 411 ~e----g~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~---~~~~~i~~~~~~~~----p~~~~~~~~~~~~~ 476 (523)
.+ +++|..+|+|+|+||+|+||+|+++||++||....| .+.+++++++.+.. +...+++.+.+..+
T Consensus 477 ~~~~~~~~~~~~~~~i~P~gear~d~~I~~~La~rlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~l~~~g~ 553 (617)
T cd02770 477 SNAGMMEYLIYSQKAIEPLYECKSDYEICAELAKRLGVEDQFTEGKTEQEWLEELYGQTRAKEPGLPTYEEFREKGI 553 (617)
T ss_pred cccCCCceEEeeccccCCCccCcCHHHHHHHHHHHhCCcccccCCCCHHHHHHHHHHHHHhccCCCCCHHHHHhcCC
Confidence 66 689999999999999999999999999999997332 58899998886432 22236666665443
No 29
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=100.00 E-value=8.7e-62 Score=520.75 Aligned_cols=390 Identities=15% Similarity=0.120 Sum_probs=306.9
Q ss_pred cccCcccccc--cccccccccceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCC
Q 009859 46 CPVGALTSKP--FAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRL 122 (523)
Q Consensus 46 CPvGAlt~k~--~~~~aR~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl 122 (523)
.|+..+++.. ..-.....+...+.|+|++ +.||++.++++||+|+||+|++++|+|+|++|.||+++++.+| |+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~g~~~~~~~s~C~~-g~~C~l~v~v~dGrv~~v~g~~~~p~n~G~lC~kg~~~~~~~y~pdRl 100 (524)
T cd02764 22 YPVEKIVPYVIWPENIVPGETVYYATSLVPA-GEGQGVLVKTVDGRPIKIEGNPDHPASLGGTSARAQASVLSLYDPDRA 100 (524)
T ss_pred CChhhhCCcccCcccccCCccceeEEEecCC-CcceeEEEEEECCeEEEeeCCCCCCcCCCCcCHHHHHHHHhhcChHhh
Confidence 4666665422 0111233566788899998 9999999999999999999999999999999999999999997 9999
Q ss_pred CCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcC-CCCEEEEeCCCCcHHHHHHHHHHHHH-cCCCccccCCCcc-c----h
Q 009859 123 NDPMIRGADGRFKAVNWRDALAVVAEVMLQAK-PEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGA-Q----S 195 (523)
Q Consensus 123 ~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~-~~~i~~~~g~~~~~e~~~~~~~l~~~-lG~~~~~~~~~~~-~----~ 195 (523)
++||+|+|+|+|++||||||+++|+++|++++ +++++++.|+..+.|..+++++|++. .|++++++..... . .
T Consensus 101 ~~Pl~R~g~g~~~~iSWdeAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 180 (524)
T cd02764 101 QGPLRRGIDGAYVASDWADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYDPLSAEDVNEAW 180 (524)
T ss_pred hhhHhcCCCCCeeeCCHHHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeECCCChHHHHHHH
Confidence 99999987899999999999999999999987 47788888877777778889999995 5677765543221 1 1
Q ss_pred hhhhhcCcccCCCccccccCCEEEEEcCCCCcchh--hHHHHHHHHHHhCC-----CeEEEEcCCCCCCcchhc------
Q 009859 196 NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAA--MVNARIRKTVRANN-----AKVGYIGPATDLNYDHQH------ 262 (523)
Q Consensus 196 ~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p--~~~~~lr~a~~~~g-----~klv~idp~~~~t~~~a~------ 262 (523)
...+|.. ..+..|+++||+||+||+||.+++| +...+...+++++| .|||+|||+.+.|+..++
T Consensus 181 ~~~~G~~---~~~~~D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~ir 257 (524)
T cd02764 181 QASFGKD---VVPGYDFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIR 257 (524)
T ss_pred HHHcCCC---CCCCcChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccC
Confidence 1223322 2357899999999999999999964 34444433334455 499999999999998876
Q ss_pred cCCCHHHHHHHH-------------------------------cC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHH
Q 009859 263 LGTGPKTLLEIA-------------------------------EG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDA 306 (523)
Q Consensus 263 ~g~~~~~l~~~~-------------------------------~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~ 306 (523)
||+|...+..++ +| |+++|++|+++++++|++|.+..++. |.+
T Consensus 258 PGtD~al~lam~~~ii~~~~~d~d~~f~~~~~~~~tpe~aa~itgv~~~~I~~lA~~~a~~~~~~i~~G~g~~~~~-g~~ 336 (524)
T cd02764 258 PSQEKAFALGLAHKLIKKGAGSSLPDFFRALNLAFKPAKVAELTVDLDKALAALAKALAAAGKSLVVAGSELSQTA-GAD 336 (524)
T ss_pred cccHHHHHHHHHHHHhhccccccchhhhhhhhcccCcccccccccchHHHHHHHHHHHHhcCCcEEEECCCCCccc-cHH
Confidence 688765431110 23 68999999999999999999999877 889
Q ss_pred HHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCc----cccccCccEEEEEcCCCCC--------CCCCCC
Q 009859 307 IFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPES----SNSIESAKFVYLMGADDVD--------LEKLPN 374 (523)
Q Consensus 307 ~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~----~~~~~~i~~l~~~g~n~~~--------~~~l~~ 374 (523)
..+++..|+.+||++|+++..... +..+.. ....+.. ....++||++|++++||+. .++|++
T Consensus 337 ~~~ai~~L~altG~~g~~~~~~~~-----~~~~~~-~~~~~~~~l~~~i~~g~ik~l~v~~~Np~~~~p~~~~~~~al~k 410 (524)
T cd02764 337 TQVAVNALNSLLGNDGKTVDHARP-----IKGGEL-GNQQDLKALASRINAGKVSALLVYDVNPVYDLPQGLGFAKALEK 410 (524)
T ss_pred HHHHHHHHHHHhCCCCccccCCCC-----cccccc-cchHHHHHHHHHHHcCCccEEEEeCCCccccCCCcHHHHHHHhc
Confidence 999999999999999875432211 000000 0000000 0136789999999999974 145789
Q ss_pred CceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccH-HHHHHHHHHHhCCCC
Q 009859 375 DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDD-WKIIRALSEVAGMRL 446 (523)
Q Consensus 375 ~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d-~~Il~~La~~lg~~~ 446 (523)
++|+|++|+|+|+|+++||||||+++|+|++|+++|.+|++|.++|+|+|+||+|+| |+|+++||++||...
T Consensus 411 ~df~Vv~d~~~teTa~~ADvVLPaat~~E~~g~~~~~~~~~~~~~~~i~P~gear~d~~~i~~~La~~lg~~~ 483 (524)
T cd02764 411 VPLSVSFGDRLDETAMLCDWVAPMSHGLESWGDAETPDGTYSICQPVIAPLFDTRSAQESLLLALGGSLGGYE 483 (524)
T ss_pred CCeEEEecCCCChhHHhcCEeccCCCccccccCccccCceEEEeccccccccCCCCcHHHHHHHhccCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999753
No 30
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=100.00 E-value=7.9e-61 Score=494.69 Aligned_cols=340 Identities=30% Similarity=0.413 Sum_probs=298.3
Q ss_pred eeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCC-CCeeEcCHHHHHHHH
Q 009859 69 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGAD-GRFKAVNWRDALAVV 146 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~-g~~~~isWdeAl~~i 146 (523)
+|+|++|+.||++.+++++|+|+||+|++++++|++++|+|||+.++.++ |+||++||+|.++ |+|++||||||++++
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~ri~~~~~~~~n~g~~C~rg~~~~~~~~~~~Rl~~Pl~r~~~~~~~~~isWdeAl~~i 80 (374)
T cd00368 1 PSVCPFCGVGCGILVYVKDGKVVRIEGDPNHPVNEGRLCDKGRAGLDGLYSPDRLKYPLIRVGGRGKFVPISWDEALDEI 80 (374)
T ss_pred CcCCCCCcCCCCEEEEEECCEEEEEECCCCCCCCCceECCCccccccccCCcccccCCeEecCCCCCeEEecHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999997 9999999999832 399999999999999
Q ss_pred HHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhh----cCcccCCCccccccCCEE
Q 009859 147 AEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLR----SGYIMNTSISGLEKADCF 218 (523)
Q Consensus 147 a~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~----~~~~~~~~~~di~~ad~i 218 (523)
+++|++++ +++++++.|+..+.|+.+++++|+..+|++++++....|......+ .....+.++.|+++||+|
T Consensus 81 a~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ad~i 160 (374)
T cd00368 81 AEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLADIENADLI 160 (374)
T ss_pred HHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHHHHhhCCEE
Confidence 99999875 4789888888888899999999999999999988877764332211 122334688999999999
Q ss_pred EEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH-----HHHHcC-----cHHHHH
Q 009859 219 LLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL-----LEIAEG-----RHPFFS 282 (523)
Q Consensus 219 l~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l-----~~~~~g-----i~~~a~ 282 (523)
|+||+|+..++|.+..+++++.+ +|+||++|||+.+.|+..++ ||+|...+ .++ +| |+++|+
T Consensus 161 l~~G~n~~~~~~~~~~~~~~a~~-~g~kvv~idp~~s~t~~~ad~~i~i~pgtd~al~~a~~~~~i-~g~~~~~i~~la~ 238 (374)
T cd00368 161 LLWGSNPAETHPVLAARLRRAKK-RGAKLIVIDPRRTETAAKADEWLPIRPGTDAALALAEWAAEI-TGVPAETIRALAR 238 (374)
T ss_pred EEEcCChHHhChHHHHHHHHHHH-CCCeEEEEcCCCCcchHhhCEeeCCCCCcHHHHHhHHHHHHH-HCCCHHHHHHHHH
Confidence 99999999999999999999875 89999999999999987765 68887654 233 34 688999
Q ss_pred HHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEE
Q 009859 283 AISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLM 362 (523)
Q Consensus 283 ~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~ 362 (523)
+|++++++++++|.+..++.++.+..+++..|+.++|+++++|+++..
T Consensus 239 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~~~~g~~~~~-------------------------------- 286 (374)
T cd00368 239 EFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNIGRPGGGLGP-------------------------------- 286 (374)
T ss_pred HHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCCCCCCCcCCC--------------------------------
Confidence 999999999999999999999999999999999999999887654421
Q ss_pred cCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHH
Q 009859 363 GADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKI 434 (523)
Q Consensus 363 g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~I 434 (523)
+.||+. .+++++.+|+|++|+++++|+++||||||+++|+|++|+++|.+|++|.++|+++|++++|+||+|
T Consensus 287 ~~np~~~~~~~~~~~~al~~~~~~V~~d~~~~eta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~p~~~~~~~~~i 366 (374)
T cd00368 287 GGNPLVSAPDANRVRAALKKLDFVVVIDIFMTETAAYADVVLPAATYLEKEGTYTNTEGRVQLFRQAVEPPGEARSDWEI 366 (374)
T ss_pred CCChhhcCCCHHHHHHHHhCCCeEEEEecCCCcchhhCcEEecCCcccccCCCccCCCceEEEecCCcCCCCCCccHHHH
Confidence 445432 146788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 009859 435 IRALSEVA 442 (523)
Q Consensus 435 l~~La~~l 442 (523)
+.+|+++|
T Consensus 367 ~~~La~~l 374 (374)
T cd00368 367 LRELAKRL 374 (374)
T ss_pred HHHHHhhC
Confidence 99999875
No 31
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=100.00 E-value=6e-61 Score=535.95 Aligned_cols=386 Identities=15% Similarity=0.144 Sum_probs=304.9
Q ss_pred ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC---CCCeeEcCHH
Q 009859 65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNWR 140 (523)
Q Consensus 65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g---~g~~~~isWd 140 (523)
.+.++|+|++|+.+|++.++++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|++ +|+|++||||
T Consensus 41 ~~~~~t~C~~C~~~C~l~~~v~~G~iv~v~g~~~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~~~rg~g~~~~iSWd 120 (759)
T PRK15488 41 TKLTPSICEMCSTRCPIEARVVNGKNVFIQGNPKAKSFGTKVCARGGSGHSLLYDPQRIVKPLKRVGERGEGKWQEISWD 120 (759)
T ss_pred ceEEccCCCCccCCCceEEEEECCEEEEeECCCCCCCCCCccCccchhHHHhhcCcchhccceeecCCCCCCCeEEeCHH
Confidence 678999999999999999999999999999999999999999999999999997 999999999973 6899999999
Q ss_pred HHHHHHHHHHHhcCC----CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccC-CCccccccC
Q 009859 141 DALAVVAEVMLQAKP----EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMN-TSISGLEKA 215 (523)
Q Consensus 141 eAl~~ia~~L~~~~~----~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~di~~a 215 (523)
|||++||++|+++++ ++++++.+. .+. . .++++|++.+|++|++.+.+.|......+....+| ....|+++|
T Consensus 121 EAl~~ia~~l~~i~~~~G~~~i~~~~~~-~~~-~-~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~D~~~a 197 (759)
T PRK15488 121 EAYQEIAAKLNAIKQQHGPESVAFSSKS-GSL-S-SHLFHLATAFGSPNTFTHASTCPAGYAIAAKVMFGGKLKRDLANS 197 (759)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecCC-CcH-H-HHHHHHHHHcCCCCCCCccccccchhhhhHHhhcCCCccCCHhhC
Confidence 999999999998753 677654432 222 2 35778999999999988877775433332222333 346899999
Q ss_pred CEEEEEcCCCCcchhhHH-HHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH------------------
Q 009859 216 DCFLLVGTQPRVEAAMVN-ARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------------ 270 (523)
Q Consensus 216 d~il~~G~n~~~~~p~~~-~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l------------------ 270 (523)
|+||+||+||.+++|+.. .+++++++++|+|||+|||+.+.|+..++ ||+|...+
T Consensus 198 d~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~D~~fi 277 (759)
T PRK15488 198 KYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRPGTDLAVVLALCHVLIEENLYDKAFV 277 (759)
T ss_pred cEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCCCcHHHHHHHHHHHHHHcCcccHHHH
Confidence 999999999999988755 44777765699999999999999998875 67775432
Q ss_pred ----------------------HHHHcC-----cHHHHHHHhcCCCcE-EEEcCCcccccCHHHHHHHHHHHHHHcCCCC
Q 009859 271 ----------------------LEIAEG-----RHPFFSAISNAKNPV-IIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 322 (523)
Q Consensus 271 ----------------------~~~~~g-----i~~~a~~l~~a~~~~-ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~ 322 (523)
+++ +| |+++|++|+++++.+ +.+|.+..++.++.+..+++..|+.++|+++
T Consensus 278 ~~~t~gf~~~~~~~~~~t~e~~a~~-~Gv~~~~I~~lA~~~a~~~~~~v~~~g~g~~~~~~g~~~~~ai~~L~~l~G~ig 356 (759)
T PRK15488 278 ERYTSGFEELAASVKEYTPEWAEAI-SDVPADDIRRIARELAAAAPHAIVDFGHRATFTPEEFDMRRAIFAANVLLGNIE 356 (759)
T ss_pred HHHHhHHHHHHHHHhccCHHHHHHH-hCcCHHHHHHHHHHHHhhCCeEEEecCCCceecCccHHHHHHHHHHHHHhCcCC
Confidence 111 24 689999999766544 4568899888889999999999999999999
Q ss_pred CCCCceee--------cchhhHHhhHHhcC--------------------CCCC---c---------cccccCccEEEEE
Q 009859 323 PDWNGLNV--------LLLNAAQAAALDLG--------------------LVPE---S---------SNSIESAKFVYLM 362 (523)
Q Consensus 323 ~~g~g~~~--------l~~~~n~~g~~~~g--------------------~~p~---~---------~~~~~~i~~l~~~ 362 (523)
++|+++.. +.+..+..+....+ +.+. . ...++++|++|++
T Consensus 357 ~~Gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~ 436 (759)
T PRK15488 357 RKGGLYFGKNASVYNKLAGEKVAPTLAKPGVKGMPKPTAKRIDLVGEQFKYIAAGGGVVQSIIDATLTQKPYQIKGWVMS 436 (759)
T ss_pred CCCCcccCCCcccccccCCcccCcccccCccccCCCccccccccccccccCCcccCchHHHHHHHHhcCCCCCceEEEEe
Confidence 98854311 11111111100000 0000 0 0124579999999
Q ss_pred cCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCc---eEeecCccCCCCCCccH
Q 009859 363 GADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGC---TQQTLPAVPTVGDARDD 431 (523)
Q Consensus 363 g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~---~q~~~~~v~p~ge~r~d 431 (523)
++||+. .++|++++|+|++|+++|+|+++||||||+++++|++|+++|.+|+ ++..+|+|+|+||+|+|
T Consensus 437 g~Np~~~~p~~~~~~~al~k~df~V~~d~~~teTa~~ADvVLPa~t~~E~~g~~~~~~~~~~~~~~~~~~v~P~ge~~~d 516 (759)
T PRK15488 437 RHNPMQTVTDRADVVKALKKLDLVVVCDVYLSESAAYADVVLPESTYLERDEEISDKSGKNPAYALRQRVVEPIGDTKPS 516 (759)
T ss_pred CCCccccCCCHHHHHHHHhcCCeEEEEeCCCCcchhhccEEecCCccccccccccccCCCCcceeeeccccCCCccCccH
Confidence 999974 2468899999999999999999999999999999999999998774 67789999999999999
Q ss_pred HHHHHHHHHHhCCC--CCCCCHHHH
Q 009859 432 WKIIRALSEVAGMR--LPYDTIGGI 454 (523)
Q Consensus 432 ~~Il~~La~~lg~~--~~~~~~~~i 454 (523)
|+|+++||++||.. ++|.+.+++
T Consensus 517 ~~I~~~La~~lg~~~~~~~~~~~~~ 541 (759)
T PRK15488 517 WQIFKELGEKMGLGQYYPWQDMETL 541 (759)
T ss_pred HHHHHHHHHHhCCccccCCCCHHHH
Confidence 99999999999987 455565554
No 32
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=5.8e-61 Score=517.81 Aligned_cols=378 Identities=18% Similarity=0.156 Sum_probs=303.1
Q ss_pred eeeec-cCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC---CCCCeeEcCHHHHH
Q 009859 69 ETIDV-TDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDAL 143 (523)
Q Consensus 69 ~siC~-~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~~~isWdeAl 143 (523)
.|+|+ +|+.||++.++++||+|+||+|+++++.|.+++|.||++.++.+| |+||++||+|+ |+|+|++|||||||
T Consensus 1 ~~~C~~~C~~~C~i~v~v~dG~iv~v~g~~~~~~~~~~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~iSWdEAl 80 (567)
T cd02765 1 YTACPPNCGGRCPLKCHVRDGKIVKVEPNEWPDKTYKRGCTRGLSHLQRVYSPDRLKYPMKRVGERGEGKFERITWDEAL 80 (567)
T ss_pred CCccCCccccCCceEEEEECCEEEEEeCCCCCCCCCCCcCcccchhhhhhcChhhhcCCeeecCCCCCCcEEEecHHHHH
Confidence 47897 599999999999999999999998777799999999999999997 99999999997 46899999999999
Q ss_pred HHHHHHHHhcCC----CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCcc-----chhhhhhcCc-ccCCCccccc
Q 009859 144 AVVAEVMLQAKP----EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGA-----QSNADLRSGY-IMNTSISGLE 213 (523)
Q Consensus 144 ~~ia~~L~~~~~----~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~di~ 213 (523)
++||++|+++++ ++|+++.|+....+..++..+++...+ +.++....| .....+|... ..+.++.|++
T Consensus 81 ~~ia~kl~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~D~~ 158 (567)
T cd02765 81 DTIADKLTEAKREYGGKSILWMSSSGDGAILSYLRLALLGGGL--QDALTYGIDTGVGQGFNRVTGGGFMPPTNEITDWV 158 (567)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCCCcccccHHHHHHhhCCC--CcccccCcccccccCccceeccccccCCCCHhHHh
Confidence 999999998753 688888776544344444334443222 222222111 1111222111 1124689999
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHH------------------
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT------------------ 269 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~------------------ 269 (523)
+||+||+||+||.+++|....+++++. ++|+|||+||||.+.|+..++ ||+|.+.
T Consensus 159 ~ad~il~~G~Np~~s~~~~~~~~~~a~-~~GakliviDPr~s~ta~~Ad~~l~irPGTD~al~~am~~~ii~~~l~D~~F 237 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDAR-ENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPALALGMINYILEHNWYDEAF 237 (567)
T ss_pred cCcEEEEECCChHHccchhHHHHHHHH-HcCCeEEEECCCCCcchhhcCEEeccCCCchHHHHHHHHHHHHhcCcccHHH
Confidence 999999999999999998777777765 499999999999999988765 5665432
Q ss_pred --------------------------------------------------------------------------------
Q 009859 270 -------------------------------------------------------------------------------- 269 (523)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (523)
T Consensus 238 i~~~t~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~g~~~~~g~~~~~~f~~~~~~~~~~ 317 (567)
T cd02765 238 LKSNTSAPFLVREDNGTLLRQADVTATPAEDGYVVWDTNSDSPEPVAATNINPALEGEYTINGVKVHTVLTALREQAASY 317 (567)
T ss_pred HHhcCCCceEEEccCCcEeehhhccccCccCceEEEECCCCCcccCCCCCCCcceeeeEEECCEEEeEHHHHHHHHhhcC
Confidence
Q ss_pred ----HHHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhH
Q 009859 270 ----LLEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA 340 (523)
Q Consensus 270 ----l~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~ 340 (523)
++++ +| |+++|++|+++++++|++|.|++++.+|.+..+++.+|+.+||++|++|+|++
T Consensus 318 tpe~aa~i-tGV~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~ra~~~L~~ltG~ig~~Ggg~~----------- 385 (567)
T cd02765 318 PPKAAAEI-CGLEEAIIETLAEWYATGKPSGIWGFGGVDRYYHSHVFGRTAAILAALTGNIGRVGGGVG----------- 385 (567)
T ss_pred CHHHHHHH-HCcCHHHHHHHHHHHhhCCCeEEecccchhhhhhchHHHHHHHHHHHHhCcCCCCCCCcc-----------
Confidence 1222 24 68999999999999999999999999999999999999999999999987642
Q ss_pred HhcCCCCCccccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCC
Q 009859 341 LDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE 412 (523)
Q Consensus 341 ~~~g~~p~~~~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~e 412 (523)
.+|++|++++||+. .++|++++|+|++|+++|+|+++||||||+++|+|++|+++|.+
T Consensus 386 --------------~ik~l~~~~~Np~~~~p~~~~~~~al~kldf~V~~d~~~teTa~~ADvvLP~~~~~E~~~~~~~~~ 451 (567)
T cd02765 386 --------------QIKFMYFMGSNFLGNQPDRDRWLKVMKNLDFIVVVDIFHTPTVRYADIVLPAAHWFEVEDLLVRYT 451 (567)
T ss_pred --------------ceeEEEEecCchhhccchHHHHHHHHhcCCEEEEEecccCcchhhccEEecCCccccccccccccc
Confidence 17999999999974 24678999999999999999999999999999999999999876
Q ss_pred --CceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC-CCHHHHHHHHH-HhCCCCC--CccccCCCC
Q 009859 413 --GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY-DTIGGIRSRIR-TVAPNLL--HVDEREPAT 475 (523)
Q Consensus 413 --g~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~-~~~~~i~~~~~-~~~p~~~--~~~~~~~~~ 475 (523)
+++|..+|+|+|+||+|+||+|+.+||++||.+..| .+.+++++++. ...|.+. +++.+.+..
T Consensus 452 ~~~~~~~~~~~i~p~gear~d~~I~~~La~~lG~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~~g 520 (567)
T cd02765 452 THPHVLLQQKAIEPLFESKSDFEIEKGLAERLGLGDYFPKTPEDYVRAFMNSDDPALDGITWEALKEEG 520 (567)
T ss_pred CCceEEEeccccCCCCCCccHHHHHHHHHHHhCCccCCCCCHHHHHHHHHcCCCccccCCCHHHHHhcC
Confidence 789999999999999999999999999999987544 57777877763 3445443 555555443
No 33
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.6e-60 Score=509.15 Aligned_cols=357 Identities=15% Similarity=0.132 Sum_probs=293.7
Q ss_pred eeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC-------CCCeeEcC
Q 009859 67 GTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-------DGRFKAVN 138 (523)
Q Consensus 67 ~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g-------~g~~~~is 138 (523)
+++|+|++|+.||++.+++++|+|+||+|+++||+|+|++|.||++.++++| |+||++||+|+| +|+|++||
T Consensus 1 ~~~t~C~~C~~~C~l~v~v~dg~v~kv~g~~~~p~n~G~lC~kG~~~~~~~y~pdRi~~Pl~R~~~rg~~~~~g~~~~is 80 (523)
T cd02757 1 WVPSTCQGCTAWCGLQAYVEDGRVTKVEGNPLHPGSRGRLCAKGHLGLQQVYDPDRILYPMKRTNPRKGRDVDPKFVPIS 80 (523)
T ss_pred CcCccCcCCcCCCCeEEEEECCEEEEEECCCCCCCCCccCCcccccchhhhcCccccccCeeecCCCCCCCCCCCeeEec
Confidence 3689999999999999999999999999999999999999999999999997 999999999973 78999999
Q ss_pred HHHHHHHHHHHHHhcCC----CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCccc---CCCccc
Q 009859 139 WRDALAVVAEVMLQAKP----EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIM---NTSISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~----~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d 211 (523)
|||||++||++|+++++ ++++++.|... .+..+++++|++.+|++|+..+...|.....++....+ +.+..|
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~-~~~~~~~~r~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~g~~~~~~~D 159 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRGRYG-HNNSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGGWDYNSYD 159 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeCCCC-CccchHHHHHHHHhCcCCCcCCcchhhhHHHHHHHHHhCCCCCCCcc
Confidence 99999999999998753 56766655443 34556899999999999987766666543333322111 234579
Q ss_pred cccCCEEEEEcCCCCcchhhH--HHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH-------------
Q 009859 212 LEKADCFLLVGTQPRVEAAMV--NARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------- 270 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~--~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l------------- 270 (523)
+++||+||+||+|+.++++.. ..++.++. ++|+|||+||||.+.|+..++ ||+|.+.+
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~-~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~ii~~~~~ 238 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGK-MDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVILTEGLW 238 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHH-HCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHHHHCCCc
Confidence 999999999999999886433 36777775 589999999999999988775 56664321
Q ss_pred --------------------------------------HHH-----------HcC-----cHHHHHHHhcCCCcEEE-Ec
Q 009859 271 --------------------------------------LEI-----------AEG-----RHPFFSAISNAKNPVII-VG 295 (523)
Q Consensus 271 --------------------------------------~~~-----------~~g-----i~~~a~~l~~a~~~~ii-~g 295 (523)
.+. .+| |+++|++|+++++.+++ .+
T Consensus 239 d~~Fv~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~e~aa~~tGv~~~~I~~lA~~~a~~~~~~~~~~~ 318 (523)
T cd02757 239 DKDFVGDFVDGKNYFKAGETVDEESFKEKSTEGLVKWWNLELKDYTPEWAAKISGIPAETIERVAREFATAAPAAAAFTW 318 (523)
T ss_pred cHHHHHHhccchhhhhcCCcCChhhccccchhHHHHHHHHHHhccCHHHHHHHHCcCHHHHHHHHHHHHhcCCcEEEecC
Confidence 010 123 67899999998865555 57
Q ss_pred CCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCccccccCccEEEEEcCCCCC-------
Q 009859 296 AGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD------- 368 (523)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~~~g~n~~~------- 368 (523)
.|..++.+|.+..+++..|+.+||++|++|++... ....+||++|+++.||+.
T Consensus 319 ~g~~~~~~G~~~~~ai~~L~~ltG~ig~~GG~~~~--------------------~~~~~ik~~~~~~~Np~~~~pd~~~ 378 (523)
T cd02757 319 RGATMQNRGSYNSMACHALNGLVGSIDSKGGLCPN--------------------MGVPKIKVYFTYLDNPVFSNPDGMS 378 (523)
T ss_pred ccccccCChHHHHHHHHHHHHHhCCCCCCCCCcCC--------------------CCCCCceEEEEccCCccccCCCHHH
Confidence 89999999999999999999999999988743210 012479999999999974
Q ss_pred -CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCce---eecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCC
Q 009859 369 -LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGT---YENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 444 (523)
Q Consensus 369 -~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt---~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~ 444 (523)
.++|++++|+|++|+++|+|+++||||||+++++|++|. +++.+++++..+|+++|+||+|+||+|+.+||++||.
T Consensus 379 ~~eal~~~~~~V~~d~~~teTa~~ADiVLP~~~~~E~~~~~~~~~~~~~~~~~~~~vi~P~ge~r~d~ei~~~La~~l~~ 458 (523)
T cd02757 379 WEEALAKIPFHVHLSPFMSETTYFADIVLPDGHHFERWDVMSQENNLHPWLSIRQPVVKSLGEVREETEILIELAKKLDP 458 (523)
T ss_pred HHHHHHCCCeEEEEeCCcCchHhhCCEEecCCChhhhcCccccccCCcceeEEecCccCCCcCCCCHHHHHHHHHHHhCC
Confidence 145788999999999999999999999999999999995 4467788999999999999999999999999999997
Q ss_pred C
Q 009859 445 R 445 (523)
Q Consensus 445 ~ 445 (523)
+
T Consensus 459 ~ 459 (523)
T cd02757 459 K 459 (523)
T ss_pred C
Confidence 4
No 34
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.3e-59 Score=512.67 Aligned_cols=394 Identities=19% Similarity=0.228 Sum_probs=306.5
Q ss_pred CCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC-------------CCCeeEcCHH
Q 009859 75 DAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-------------DGRFKAVNWR 140 (523)
Q Consensus 75 C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g-------------~g~~~~isWd 140 (523)
|+.+|++.++|+||+|+||+|++++ ++++|.||++.++.+| |+||++||+|+| +|+|++||||
T Consensus 3 ~~~~C~i~v~v~dG~vvrv~g~~~~---~g~lC~kG~~~~~~~y~pdRl~~Pl~R~g~rg~~~~~~~~~g~g~~~~iSWD 79 (609)
T cd02751 3 ACHWGPFKAHVKDGVIVRVEPDDTD---QPRPCPRGRSVRDRVYSPDRIKYPMKRVGWLGNGPGSRELRGEGEFVRISWD 79 (609)
T ss_pred ccccCceEEEEECCEEEEEecCCCC---CcCcChhhhhhhhhccChhhhcCCeeeccccccCCcccccCCCCCEEEecHH
Confidence 4449999999999999999999887 8999999999999997 999999999974 7899999999
Q ss_pred HHHHHHHHHHHhcCC----CCEEEEeCCCCc----HHHHHHHHHHHHHcCCCccccCCCccchh------hhhhcCcc--
Q 009859 141 DALAVVAEVMLQAKP----EEIVGIAGRLSD----AESMMALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYI-- 204 (523)
Q Consensus 141 eAl~~ia~~L~~~~~----~~i~~~~g~~~~----~e~~~~~~~l~~~lG~~~~~~~~~~~~~~------~~~~~~~~-- 204 (523)
|||++||++|+++++ ++|+++.++..+ .+..+++++|++.+|+. .++....|... ..+|....
T Consensus 80 EAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~c~~~~~~~~~~~~G~~~~~~ 158 (609)
T cd02751 80 EALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGY-LGSYGTYSTGAAQVILPHVVGSDEVYE 158 (609)
T ss_pred HHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCC-cCCCCCccHHHHHhHhhhEEccchhcc
Confidence 999999999998764 566554443221 34567789999999873 33333444221 22332211
Q ss_pred cCCCcccccc-CCEEEEEcCCCCcchhhHH--------HHHHHHHHhCCCeEEEEcCCCCCCcc-hhc------cCCCHH
Q 009859 205 MNTSISGLEK-ADCFLLVGTQPRVEAAMVN--------ARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGPK 268 (523)
Q Consensus 205 ~~~~~~di~~-ad~il~~G~n~~~~~p~~~--------~~lr~a~~~~g~klv~idp~~~~t~~-~a~------~g~~~~ 268 (523)
.+.++.|+++ ||+||+||+||.+++|..+ .+++++. ++|+|||+||||.+.|++ .++ ||+|.+
T Consensus 159 ~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~-~~GakiivIDPr~s~ta~~~AD~~l~irPGtD~a 237 (609)
T cd02751 159 QGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAK-DAGVRFICIDPRYTDTAAVLAAEWIPIRPGTDVA 237 (609)
T ss_pred CCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHH-HCCCeEEEECCCCCccccccCCEEECCCCCcHHH
Confidence 1346899986 9999999999999998653 6788875 599999999999999987 554 677754
Q ss_pred HH----------------------------------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCC
Q 009859 269 TL----------------------------------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAG 297 (523)
Q Consensus 269 ~l----------------------------------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~ 297 (523)
.+ +++ +| |+++|++|++ ++++|++|.+
T Consensus 238 L~lam~~~ii~~~~~D~~fi~~~t~gfe~~~~~l~g~~dg~~~tpe~aa~i-tGv~~~~I~~lA~~~a~-~~~~i~~g~g 315 (609)
T cd02751 238 LMLAMAHTLITEDLHDQAFLARYTVGFDEFKDYLLGESDGVPKTPEWAAEI-TGVPAETIRALAREIAS-KRTMIAQGWG 315 (609)
T ss_pred HHHHHHHHHHHCcchhHHHHHHHccCcHHHHHHhccCCCCccCCHHHHHHH-HCcCHHHHHHHHHHHhc-CCcEEeccch
Confidence 32 111 24 6889999999 8899999999
Q ss_pred cccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCC----C-----CCcc------------------
Q 009859 298 LFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGL----V-----PESS------------------ 350 (523)
Q Consensus 298 ~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~----~-----p~~~------------------ 350 (523)
++++.++.+..+++..|+.+||+++++|+|+....+..|..|..+++. . |...
T Consensus 316 ~~~~~ng~~~~rai~~L~~ltGn~g~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 395 (609)
T cd02751 316 LQRAHHGEQPAWMLVTLAAMLGQIGLPGGGFGFGYGYSNGGGPPRGGAGGPGLPQGKNPVKDSIPVARIADALLNPGKEF 395 (609)
T ss_pred HHhHhcccHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCCccccccCcccCCCCCCCcceEeeHhhHHHHHhCCCCeE
Confidence 999999999999999999999999999988876655444444332221 1 1000
Q ss_pred ------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeec---CCC
Q 009859 351 ------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYEN---TEG 413 (523)
Q Consensus 351 ------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n---~eg 413 (523)
...++||++|++++||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|++.+ .++
T Consensus 396 ~~~~~~~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~~df~Vv~d~~~teTa~~ADvVLP~~~~~E~~~~~~~~~~~~~ 475 (609)
T cd02751 396 TANGKLKTYPDIKMIYWAGGNPLHHHQDLNRLIKALRKDETIVVHDIFWTASARYADIVLPATTSLERNDIGLTGNYSNR 475 (609)
T ss_pred eecCcccCCCCEEEEEECCCChhhcCcchHHHHHHHhcCCEEEEEccCCCCccccCCEEeccCchhhccCccccCCCCCc
Confidence 013589999999999974 245788999999999999999999999999999999998755 388
Q ss_pred ceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHhC--------CCCCCccccCCCC
Q 009859 414 CTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRTVA--------PNLLHVDEREPAT 475 (523)
Q Consensus 414 ~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~---~~~~~i~~~~~~~~--------p~~~~~~~~~~~~ 475 (523)
++|.++|+|+|+||+|+||+|+++||++||.+..| .+.+++++.+.+.. ....+++.+.+..
T Consensus 476 ~~~~~~~~i~P~ge~r~d~~I~~~La~~lg~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~e~l~~~g 548 (609)
T cd02751 476 YLIAMKQAVEPLGEARSDYEIFAELAKRLGVEEEFTEGRDEMEWLEHLYEETRAKAAGPGPELPSFEEFWEKG 548 (609)
T ss_pred eEEEeccccCCcccccCHHHHHHHHHHHhCCcccccCCCCHHHHHHHHHHHHHhhccccCCCCCCHHHHHhcC
Confidence 99999999999999999999999999999987433 57777666653211 1233667665544
No 35
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=6.6e-59 Score=501.39 Aligned_cols=394 Identities=18% Similarity=0.157 Sum_probs=310.1
Q ss_pred ccccceeeeeeeccCCCCCcEEEEE------------------------------------------ECCEEEE--EecC
Q 009859 61 RNWELKGTETIDVTDAVGSNIRIDS------------------------------------------RGPEVMR--ILPR 96 (523)
Q Consensus 61 R~Wel~~~~siC~~C~~gC~i~v~v------------------------------------------r~g~v~r--v~~~ 96 (523)
.|-+-+++.++|.+|-+|||..|++ +||++++ |.|+
T Consensus 6 ~p~~a~~~~~~c~~~~vgcgy~~y~w~~~~~gg~~~~~n~~~~d~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v~i~~d 85 (676)
T cd02756 6 PPVNAERYNVTCHFCIVGCGYHVYVWPVGEEGGPSPGQNAIGYDLVDQVPPLNLQWYPKTMHYVVVTQDGREVYIVIVPD 85 (676)
T ss_pred CCCCcceeeeeeeEEeeccCceeeeCCCCCcCCCCcccCcccccccccCCCcccccccccceeEEEccCCcEEEEEEECC
Confidence 4567788999999999999988875 2377766 7899
Q ss_pred CCCCCCccccccccccccCCCC-CC------CCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcC----C-CCEEEE---
Q 009859 97 LNEDINEEWISDKTRFCYDGLK-SQ------RLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----P-EEIVGI--- 161 (523)
Q Consensus 97 ~~~~~n~~~lC~kGr~~~~~~~-~~------Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~----~-~~i~~~--- 161 (523)
+++|+|.|.+|.||.+..+.++ |+ ||++||+|. +|+|++|||||||++||++|++++ + ++|+++
T Consensus 86 ~~~pvN~G~lC~KG~~~~~~~yspdR~~~~~RL~~PLiR~-~g~~~~iSWDeAld~iA~~lk~i~d~~Gp~~sv~~~~~d 164 (676)
T cd02756 86 KECPVNSGNYSTRGGTNAERIWSPDNRVGETRLTTPLVRR-GGQLQPTTWDDAIDLVARVIKGILDKDGNDDAVFASRFD 164 (676)
T ss_pred CCCCCCCCccChhhhhHHHHhcCccccccccccCCceEcc-CCceeEccHHHHHHHHHHHHHHHHHHhCCccEEEEEecc
Confidence 9999999999999999988875 66 599999999 789999999999999999999875 4 577776
Q ss_pred -eCCCCcHHHHHHHHHHH-HHcCCCccccCCCccc-----hhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHH
Q 009859 162 -AGRLSDAESMMALKDFL-NRMGSNNVWCEGTGAQ-----SNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNA 234 (523)
Q Consensus 162 -~g~~~~~e~~~~~~~l~-~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~ 234 (523)
+|+....|+.+.+.+|+ ..+|++|++++.+.|. ....++... .+.+++|+++||+||+||+||.+++|++..
T Consensus 165 ~gg~~~~~e~~y~~~k~~~~~lgt~ni~~~~r~c~~s~~~~~~~~G~g~-~~~~~~Die~Ad~Il~~G~Np~et~pv~~~ 243 (676)
T cd02756 165 HGGGGGGFENNWGVGKFFFMALQTPFVRIHNRPAYNSEVHATREMGVGE-LNNSYEDARLADTIVLWGNNPYETQTVYFL 243 (676)
T ss_pred CCCCCccchhhhHHHHHHHHhcCCCcccccCcCCcCcchhhHHhhcCCC-CCCCHHHHHhCCEEEEECCChHHhCcchHh
Confidence 34445567777777765 4899999988876542 223444432 345889999999999999999999997542
Q ss_pred -HH----H-------HHHHhCC-----CeEEEEcCCCCCCcchhc--------------cCCCHHHHHHHH---------
Q 009859 235 -RI----R-------KTVRANN-----AKVGYIGPATDLNYDHQH--------------LGTGPKTLLEIA--------- 274 (523)
Q Consensus 235 -~l----r-------~a~~~~g-----~klv~idp~~~~t~~~a~--------------~g~~~~~l~~~~--------- 274 (523)
++ + +.+.++| +||||||||.+.|+..++ ||+|.+.+..++
T Consensus 244 ~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad~~~~~~~~lhL~I~PGTD~AL~~al~~~Iie~~~~ 323 (676)
T cd02756 244 NHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAEAAAGKDRVLHLQVNPGTDTALANAIARYIYESLDE 323 (676)
T ss_pred hhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhhhhcccCcceEEeecCChHHHHHHHHHHHHHHHHHH
Confidence 22 1 1111245 699999999999988753 588865432211
Q ss_pred --------cC-----cHHHHHHHhcCC------CcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhh
Q 009859 275 --------EG-----RHPFFSAISNAK------NPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNA 335 (523)
Q Consensus 275 --------~g-----i~~~a~~l~~a~------~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~ 335 (523)
+| |+++|++|++++ +++++++.|+.++.++....+++.+|+.+||++|++|+|++.+.+.
T Consensus 324 ~~e~aa~itGV~~e~I~~~A~~~a~ak~~~~~~~~~i~~~~Gi~~~~~~~~~~~Ai~nL~llTGniGrpG~G~~~~gg~- 402 (676)
T cd02756 324 VLAEAEQITGVPRAQIEKAADWIAKPKEGGYRKRVMFEYEKGIIWGNDNYRPIYSLVNLAIITGNIGRPGTGCVRQGGH- 402 (676)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCcccccCCcEEEEecccceecccHHHHHHHHHHHHHHhCCCCCCCCcccccCcc-
Confidence 35 789999999875 6788899999999999999999999999999999999988654221
Q ss_pred HHhhHHhcC-----CCCCc--------cccccCccEEEEEcCCCCC--C------CCCCC--------------------
Q 009859 336 AQAAALDLG-----LVPES--------SNSIESAKFVYLMGADDVD--L------EKLPN-------------------- 374 (523)
Q Consensus 336 n~~g~~~~g-----~~p~~--------~~~~~~i~~l~~~g~n~~~--~------~~l~~-------------------- 374 (523)
..|..... ..|.. ....+++|++|++|+||+. + ++|++
T Consensus 403 -~~g~~~p~~~~~~~~~~~~~~~~~~~~l~~G~iK~l~v~g~NP~~s~pn~~~v~~al~~~~~~v~~a~~~~~~~~~~~~ 481 (676)
T cd02756 403 -QEGYVRPPPPPPPWYPQYQYAPYIDQLLISGKGKVLWVIGCDPYKTTPNAQRLRETINHRSKLVTDAVEAALYAGTYDR 481 (676)
T ss_pred -ccCCCCCCCCCCcccCccchHHHHHHHHhCCCceEEEEecCChhhhCcCHHHHHHHHHhhhhhhhhhhhhccccccccc
Confidence 11211100 00000 0146889999999999964 1 12221
Q ss_pred --------------CceEEEEcccCCcccCcceEEecCCCCCCCCceeecC-CCceEeecCccCCCCCCccHHHHHHHHH
Q 009859 375 --------------DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENT-EGCTQQTLPAVPTVGDARDDWKIIRALS 439 (523)
Q Consensus 375 --------------~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~-eg~~q~~~~~v~p~ge~r~d~~Il~~La 439 (523)
.+|+|++|+|+|+|+++||||||+++|+|++|+++|. ++|+|+++|+++|+||+|+||+|+++||
T Consensus 482 ~~~~~l~~~~~~~~~~fvVv~D~~~teTa~~ADvVLPaa~~~E~~gt~~n~~errv~~~~k~v~Ppgear~D~~I~~~lA 561 (676)
T cd02756 482 EAMVCLIGDAIQPGGLFIVVQDIYPTKLAEDAHVILPAAANGEMNETSMNGHERRLRLYEKFMDPPGEAMPDWWIAAMIA 561 (676)
T ss_pred hhhhhhhhhhccCCCCEEEEEecCCCchhhhCcEEeCCCCccccCCeecccCCceEEEeccccCCCccCccHHHHHHHHH
Confidence 2699999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhC----------C------CCCCCCHHHHHHHH
Q 009859 440 EVAG----------M------RLPYDTIGGIRSRI 458 (523)
Q Consensus 440 ~~lg----------~------~~~~~~~~~i~~~~ 458 (523)
++|| . .|+|.+.+++++|+
T Consensus 562 ~rl~~~~~~~g~~~~~~~~~~~f~~~~~e~~f~e~ 596 (676)
T cd02756 562 NRIYELYQEEGKGGSAQYQFFGFIWKTEEDNFMDG 596 (676)
T ss_pred HHHHHHHhhcCCccchhhhhccCCCCCHHHHHHHH
Confidence 9997 2 27899999999996
No 36
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=5.1e-59 Score=510.99 Aligned_cols=390 Identities=15% Similarity=0.127 Sum_probs=303.7
Q ss_pred eeeeccCCCCCcEEEEEEC--CEEEEEecCCCCCCC---------------------------ccccccccccccCCCC-
Q 009859 69 ETIDVTDAVGSNIRIDSRG--PEVMRILPRLNEDIN---------------------------EEWISDKTRFCYDGLK- 118 (523)
Q Consensus 69 ~siC~~C~~gC~i~v~vr~--g~v~rv~~~~~~~~n---------------------------~~~lC~kGr~~~~~~~- 118 (523)
+|+|.+|++||+|++++++ |+|+||+|++.||.| .|++|.||++.++.++
T Consensus 1 ~s~C~~C~~~Cgi~v~v~~~~g~v~~i~Gnp~hP~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~lC~KG~a~~~~~y~ 80 (735)
T cd02758 1 YSSCLGCWTQCGIRVRVDKETGKVLRIAGNPYHPLNTAPSLPYNTPLKESLYLSLVGENGLKARATACARGNAGLQYLYD 80 (735)
T ss_pred CCcCcCCcCCCCeEEEEeCCCCeEEEeeCCCCCccccCCCcccccchhhhhhhccccccccccCCCcCccchhhHhhhcC
Confidence 4899999999999999999 999999999999999 9999999999999997
Q ss_pred CCCCCCcEEeC---CCCCeeEcCHHHHHHHHHHH-----------HHhcCC--------------CC--EEEEeCCCCcH
Q 009859 119 SQRLNDPMIRG---ADGRFKAVNWRDALAVVAEV-----------MLQAKP--------------EE--IVGIAGRLSDA 168 (523)
Q Consensus 119 ~~Rl~~Pl~R~---g~g~~~~isWdeAl~~ia~~-----------L~~~~~--------------~~--i~~~~g~~~~~ 168 (523)
|+||++||+|+ |+|+|++|||||||++||++ |+++++ ++ ++++.+....
T Consensus 81 p~Rl~~PLkR~G~RGegkw~~ISWdeAl~~IA~~~~~~~~~~~~gl~~i~~~~~~idp~~p~~Gp~s~~~~~~~~~~~~- 159 (735)
T cd02758 81 PYRVLQPLKRVGPRGSGKWKPISWEQLIEEVVEGGDLFGEGHVEGLKAIRDLDTPIDPDHPDLGPKANQLLYTFGRDEG- 159 (735)
T ss_pred cccccCCeeecCCCCCCceEEecHHHHHHHHHhccccccccchhhHHHHHhhhcccccCccccCceeeEEEEEecCCCc-
Confidence 99999999997 47899999999999999999 465531 23 4333332211
Q ss_pred HHHHHHHHHH-HHcCCCccccCCCccchhhhhhcCcc------cCCCccccccCCEEEEEcCCCCcchhhH---HHHHHH
Q 009859 169 ESMMALKDFL-NRMGSNNVWCEGTGAQSNADLRSGYI------MNTSISGLEKADCFLLVGTQPRVEAAMV---NARIRK 238 (523)
Q Consensus 169 e~~~~~~~l~-~~lG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~di~~ad~il~~G~n~~~~~p~~---~~~lr~ 238 (523)
. .+++++|+ ..+|++|++.+.+.|......+.... ...+..|+++||+||+||+|+.+++|.+ ..++.+
T Consensus 160 ~-~~~~~rf~~~~~Gs~N~~~~~~~C~~s~~~g~~~~~g~~~~~~~~~~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~ 238 (735)
T cd02758 160 R-TPFIKRFANQAFGTVNFGGHGSYCGLSYRAGNGALMNDLDGYPHVKPDFDNAEFALFIGTSPAQAGNPFKRQARRLAE 238 (735)
T ss_pred c-hHHHHHHHHHcCCCCceeCCCCccccHHHHHHHHHhcCCCCCCcCCcCHhhCcEEEEeCCCHHHhCCCcchHHHHHHH
Confidence 2 27899999 68999999998888865433322111 1236799999999999999999999976 677877
Q ss_pred HHHhCCCeEEEEcCCCCCCc---chhc------cCCCHHH------------------HH--------------------
Q 009859 239 TVRANNAKVGYIGPATDLNY---DHQH------LGTGPKT------------------LL-------------------- 271 (523)
Q Consensus 239 a~~~~g~klv~idp~~~~t~---~~a~------~g~~~~~------------------l~-------------------- 271 (523)
+++++|+||||||||++.|+ ..++ ||+|.+. ++
T Consensus 239 a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIrPGTD~AL~lam~~~Iie~~~yD~~Fl~~~~~~a~~~~g~~~~tna~~ 318 (735)
T cd02758 239 ARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWIIENERYNAEYLSIPSKEAAKAAGEPSWTNATH 318 (735)
T ss_pred HHHhCCCEEEEECCCCCccccccccCCEEECCCCCcHHHHHHHHHHHHHHCCCccHHHHhccchhhhccccccccccccc
Confidence 76558999999999999998 6654 5665431 11
Q ss_pred ------------HHH--------------cC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 272 ------------EIA--------------EG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 272 ------------~~~--------------~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
++. +| |+++|++|+++++.+++++.|..+|.+|.+..+++.+|+.++|+
T Consensus 319 lv~~v~v~~gfe~l~e~~~~~Tpe~~a~icGVp~~~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~~LtGn 398 (735)
T cd02758 319 LVITVRVKSALQLLKEEAFSYSLEEYAEICGVPEAKIIELAKEFTSHGRAAAVVHHGGTMHSNGFYNAYAIRMLNALIGN 398 (735)
T ss_pred cccccccccHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEccCcccccccHHHHHHHHHHHHHhCC
Confidence 110 23 68999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeecc------hhhH----H----h---hH------------------HhcCCC---------CCcc------
Q 009859 321 IRPDWNGLNVLL------LNAA----Q----A---AA------------------LDLGLV---------PESS------ 350 (523)
Q Consensus 321 ~~~~g~g~~~l~------~~~n----~----~---g~------------------~~~g~~---------p~~~------ 350 (523)
++++|+++..-. ...+ . . |. ...+.. |...
T Consensus 399 ig~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~e~ 478 (735)
T cd02758 399 LNWKGGLLMSGGGFADNSAGPRYDFKKFFGEVKPWGVPIDRSKKAYEKTSEYKRKVAAGENPYPAKRPWYPLTPELYTEV 478 (735)
T ss_pred CCCCCCCccCCCCCCCcCcccccccccccCccCCCCCcccccccccccchHhhhhhhccCCCCccccccccccchhhhHH
Confidence 999885432100 0000 0 0 00 000100 1000
Q ss_pred ------ccccCccEEEEEcCCCCC--C-------CCC---CCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCC
Q 009859 351 ------NSIESAKFVYLMGADDVD--L-------EKL---PNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE 412 (523)
Q Consensus 351 ------~~~~~i~~l~~~g~n~~~--~-------~~l---~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~e 412 (523)
..+++||++|++++||+. + ++| ++++|+|++|+++|+|+.|||||||+++|+|++|+.++..
T Consensus 479 ~~a~~~g~Py~IKal~i~~~NP~~s~p~~~~~~~eaL~d~~kldlvVv~D~~~teTa~~AD~VLPa~t~~E~~~~~~~~~ 558 (735)
T cd02758 479 IASAAEGYPYKLKALILWMANPVYGAPGLVKQVEEKLKDPKKLPLFIAIDAFINETSAYADYIVPDTTYYESWGFSTPWG 558 (735)
T ss_pred hhhhhhcCCCCcEEEEEeCCChhhcCCcchHHHHHHhcccccCCeEEEEecCcCchHhhCCEEeCCCCcccccccccccC
Confidence 123489999999999964 1 345 4799999999999999999999999999999999988743
Q ss_pred ----CceEeecCccCCCCC------CccHHHHHHHHHHHhCCC--------------CCCCCHHHHHHHHHH
Q 009859 413 ----GCTQQTLPAVPTVGD------ARDDWKIIRALSEVAGMR--------------LPYDTIGGIRSRIRT 460 (523)
Q Consensus 413 ----g~~q~~~~~v~p~ge------~r~d~~Il~~La~~lg~~--------------~~~~~~~~i~~~~~~ 460 (523)
..++..+|+|+|+++ +|++|+|+.+||++||++ ++|++.+|++.+...
T Consensus 559 ~~~~~~~~~r~pvv~P~ge~~~~g~~~~~~~i~~~lAkrlGl~gfg~~~~~~~~~~~~~~~~~~d~~~~~~a 630 (735)
T cd02758 559 GVPTKASTARWPVIAPLTEKTANGHPVSMESFLIDLAKALGLPGFGPNAIKDGQGNKFPLNRAEDYYLRVAA 630 (735)
T ss_pred CCcccceeeEccccCcCcccccCCCccCHHHHHHHHHHHhCCCCcccccccCCCCCccCCCCHHHHHHHHHH
Confidence 346677999999985 577899999999999762 578899999887654
No 37
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=100.00 E-value=8.1e-59 Score=522.15 Aligned_cols=408 Identities=16% Similarity=0.166 Sum_probs=306.9
Q ss_pred cceeeeeeecc-CCCCCcEEEEEECCEEEEEecCCCC----CCCccccccccccccCCCC-CCCCCCcEEeC---CCCCe
Q 009859 64 ELKGTETIDVT-DAVGSNIRIDSRGPEVMRILPRLNE----DINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRF 134 (523)
Q Consensus 64 el~~~~siC~~-C~~gC~i~v~vr~g~v~rv~~~~~~----~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~ 134 (523)
+.++++|+|++ |+.+|++.|+|+||+|+||+|++.+ +.|.+++|.||++.++.+| |+||++||+|+ |+|+|
T Consensus 41 ~~~~~~t~C~~~C~~~C~l~v~v~dg~v~~v~g~~~~~~~~~~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~ 120 (797)
T TIGR02166 41 DEKVVWSACTVNCGSRCPLRVHVKDGEITRIETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKF 120 (797)
T ss_pred CceEEecccCCCCCCCCceEEEEECCEEEEEeCCCCCCcccccccCCcChhhhhHHHhhcChhhhccCeeeccCCCCCCe
Confidence 35788999985 9999999999999999999998754 4567899999999999997 99999999996 36899
Q ss_pred eEcCHHHHHHHHHHHHHhcCC----CCEEEEeC-CCC-----cHHHHHHHHHHHHHcCCC-ccccCCCc----cchhhhh
Q 009859 135 KAVNWRDALAVVAEVMLQAKP----EEIVGIAG-RLS-----DAESMMALKDFLNRMGSN-NVWCEGTG----AQSNADL 199 (523)
Q Consensus 135 ~~isWdeAl~~ia~~L~~~~~----~~i~~~~g-~~~-----~~e~~~~~~~l~~~lG~~-~~~~~~~~----~~~~~~~ 199 (523)
++|||||||++||++|+++++ ++++++.+ +.. ..+..+++.+|++.+|+. +.....+. +.....+
T Consensus 121 ~~iSWdeAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 200 (797)
T TIGR02166 121 ERISWDEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPTAVARLLNLCGGYLNQYGSYSTAQINEAMPYTY 200 (797)
T ss_pred EEecHHHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhHHHHHHHHHhCCccccCCCeecchhhcccceeE
Confidence 999999999999999998763 66766443 221 122335788999988853 32222111 1122233
Q ss_pred hcCcccCCCccccccCCEEEEEcCCCCcchh---hHHHHHHHHHHhCCCeEEEEcCCCCCCcc-hhc------cCCCHHH
Q 009859 200 RSGYIMNTSISGLEKADCFLLVGTQPRVEAA---MVNARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGPKT 269 (523)
Q Consensus 200 ~~~~~~~~~~~di~~ad~il~~G~n~~~~~p---~~~~~lr~a~~~~g~klv~idp~~~~t~~-~a~------~g~~~~~ 269 (523)
|.. ..+.++.|+++||+||+||+||.+++| .+..+++++++++|+|||+||||++.|++ .++ ||+|.+.
T Consensus 201 G~~-~~~~~~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~irPGtD~al 279 (797)
T TIGR02166 201 GIS-ADGSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIRPGTDAAL 279 (797)
T ss_pred eec-CCCCCHHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCCCCCHHHH
Confidence 322 223578999999999999999999998 56677777766689999999999999874 554 5665432
Q ss_pred -----------------------------------------------------------HHHHHcC-----cHHHHHHHh
Q 009859 270 -----------------------------------------------------------LLEIAEG-----RHPFFSAIS 285 (523)
Q Consensus 270 -----------------------------------------------------------l~~~~~g-----i~~~a~~l~ 285 (523)
++++ +| |+++|++|+
T Consensus 280 ~~a~~~~ii~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpe~aa~i-tGV~~~~I~~lA~~~a 358 (797)
T TIGR02166 280 VAAIAYVMISENLHDQAFLDRYCVGFDEKTLPASAPKNGSYKDYILGEGADGTPKTPEWASKI-TGIPADTIIKLAREIG 358 (797)
T ss_pred HHHHHHHHHHCCcccHHHHHHhccccCCccCccccccccchHhhhcCcccCCCcCCHHHHHHH-HCcCHHHHHHHHHHHH
Confidence 2222 34 789999999
Q ss_pred cCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhH--Hhh-------------------HHhcC
Q 009859 286 NAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAA--QAA-------------------ALDLG 344 (523)
Q Consensus 286 ~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n--~~g-------------------~~~~g 344 (523)
++++++|++|+|++++.+|.+..+++.+|+.+||+++++|+|++.+.+..+ ..+ ....|
T Consensus 359 ~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~aLtGnig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (797)
T TIGR02166 359 NAKPAFISQGWGPQRHANGEQAARAIMMLALLTGNVGIKGGNNGAREGNYSLPFARMPELPNPVKTSISCFLWTDAIDRG 438 (797)
T ss_pred hcCCcEEEechhhhhhhcchHHHHHHHHHHHHhCCCCCCCcCCccCCCCCCCCCCCCCCCCCCccccccHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999987643322110 000 00001
Q ss_pred C-----CCCcc---ccccCccEEEEEcCCCC-C--C------CCC---CCCceEEEEcccCCcccCcceEEecCCCCCCC
Q 009859 345 L-----VPESS---NSIESAKFVYLMGADDV-D--L------EKL---PNDAFVVYQGHHGDHGVYRANVILPASAFSEK 404 (523)
Q Consensus 345 ~-----~p~~~---~~~~~i~~l~~~g~n~~-~--~------~~l---~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~ 404 (523)
. .+... ..++++|++|++++||+ . . ++| ++++|+|++|+|+|+|++|||||||+++|+|+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~ldf~Vv~D~~~teTa~~ADiVLPa~t~lE~ 518 (797)
T TIGR02166 439 TEMTAIKDGVRGKDKLDSNIKFLWNYAGNCLINQHSDINRTHKILQDESKCEMIVVIDNHMTSSAKYADILLPDTTTLEQ 518 (797)
T ss_pred CccccccCCccCCccCCCCeEEEEEcCCCceeccchhHHHHHHHhhcccCCCEEEEeecccCcchhhccEEecCCCcccc
Confidence 0 00000 02578999999999995 3 1 234 47899999999999999999999999999999
Q ss_pred CceeecCC----CceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHH----HHHhCCCCCCccccCC
Q 009859 405 EGTYENTE----GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSR----IRTVAPNLLHVDEREP 473 (523)
Q Consensus 405 ~gt~~n~e----g~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~---~~~~~i~~~----~~~~~p~~~~~~~~~~ 473 (523)
++++.+.. +++|..+|+|+|++|+|+||+|+.+||++||++..| .+.+++.++ +....+.+.+++.+..
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~v~P~~e~r~d~~I~~~LA~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 598 (797)
T TIGR02166 519 NDFIEDSYASNMSYLIFMQKAIEPLFECKPIYDMLSEVAKRLGVEAEFTEGRTQEEWLEHLYAQTRAADPALPSFAELRK 598 (797)
T ss_pred CccccccccCCCceEEEeccCcCCcccccCHHHHHHHHHHHhCChhhccCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHh
Confidence 99886553 689999999999999999999999999999987433 355544443 3334444445555543
No 38
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.3e-59 Score=508.84 Aligned_cols=388 Identities=18% Similarity=0.280 Sum_probs=306.4
Q ss_pred CeeeecccccccceeeeecCCCCc-----------------------eEecCCCCCcCcccccccccccccCcccccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGE-----------------------EIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 57 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~-----------------------~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~ 57 (523)
||||+|+|++|..+|++.+||.++ .|++..+...+|.+||+||+|||||||++|+|+
T Consensus 148 RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~VCPvGAL~~k~~~ 227 (819)
T PRK08493 148 RCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDFQ 227 (819)
T ss_pred HHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHHHhCCCCccccCccc
Confidence 899999999999999999999994 566676777899999999999999999999999
Q ss_pred cccccccceeeeeeeccCCCCCcEEEEEECCEEEEEecC---CCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCC
Q 009859 58 FKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPR---LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGR 133 (523)
Q Consensus 58 ~~aR~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~---~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~ 133 (523)
|++|+|++++++|+|++|++||+|.+++++++|+++.++ ...++|+||||+||||+|++++ ++|.
T Consensus 228 ~~~~~wel~~v~TvCp~CsvGC~l~v~vk~~~i~~~~~ki~rV~~~~N~G~LC~KGRfg~d~~~~~dR~----------- 296 (819)
T PRK08493 228 YTSNAWELKKIPATCPHCSDCCLIYYDVKHSSILNQESKIYRVSNDFYFNPLCGAGRFAFDFQNEADKD----------- 296 (819)
T ss_pred cccCccccccccCcCCCCccCCCeEEEccCCeEecccCccccccCCCCCcccCcccccccccccCCcch-----------
Confidence 999999999999999999999999999998877665442 2346899999999999999886 5551
Q ss_pred eeEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc-----hhhhhhcCcccCCC
Q 009859 134 FKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ-----SNADLRSGYIMNTS 208 (523)
Q Consensus 134 ~~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 208 (523)
+.+||+|++.+. +. ++|++ |++.++|++|++++|++.+|++|+++..+.|. +...+|.. ++.+
T Consensus 297 --e~A~deA~e~lk----~~--~aI~~--S~~~TNEE~YllqKLar~lgtnnvD~~aR~~~~~~~~l~~~~G~~--~t~s 364 (819)
T PRK08493 297 --EKAFKEAVEAFK----EA--KAIKF--NSFITNEEALILQRLKKKFGLKLINEEALKFQQFLKVFSEVSGKS--YSAN 364 (819)
T ss_pred --HHHHHHHHHHHh----hC--CEEEe--cCCCCHHHHHHHHHHHHHhCCCCccchhhhhhHHHHHHHHhcCCC--CCCC
Confidence 566766666644 33 34543 77899999999999999999999988776542 11234433 3468
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcch---------hccCCCHHHH---------
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDH---------QHLGTGPKTL--------- 270 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~---------a~~g~~~~~l--------- 270 (523)
++||++||+||+||+|+.+++|+++.|+++|++++|++|++|||+.+.++.. ..||+|...+
T Consensus 365 l~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii~ 444 (819)
T PRK08493 365 LEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFLE 444 (819)
T ss_pred HHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998766899999999999766431 1255543211
Q ss_pred ---------------------------------------------H-------------------HHHcC-----cHHHH
Q 009859 271 ---------------------------------------------L-------------------EIAEG-----RHPFF 281 (523)
Q Consensus 271 ---------------------------------------------~-------------------~~~~g-----i~~~a 281 (523)
+ ++ +| ++++|
T Consensus 445 e~~id~~~~~F~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~ee~~~~v~~~v~~~~~~~~~~~a~~-~Gv~~e~i~~lA 523 (819)
T PRK08493 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEE-LGINEETYEKLE 523 (819)
T ss_pred cccchhhhhhHHhhhccccccccccccccccccccccccccHHHHHHHhhhhhcccccCCHHHHHHH-hCcCHHHHHHHH
Confidence 0 11 13 46899
Q ss_pred HHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCc-eeecchhhHHhhHHhcCCCCCccccccCccEEE
Q 009859 282 SAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNG-LNVLLLNAAQAAALDLGLVPESSNSIESAKFVY 360 (523)
Q Consensus 282 ~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g-~~~l~~~~n~~g~~~~g~~p~~~~~~~~i~~l~ 360 (523)
+.|+++++++|++|+|+.+|++| .+|+.+||++++-..+ +.+++...|++|...+--+ ..+...-+
T Consensus 524 ~~~a~a~~~~ii~G~gi~qh~~g-------~NLA~LtG~Igk~s~~~v~~~p~~~N~~G~~~~c~l------~~~~~~~~ 590 (819)
T PRK08493 524 ALLAKKNNFTLVVGEDLYAHKNA-------KNLAKLLGLIQKYTAFKVILIPPSTNTLGVALICDL------SEEIEGGK 590 (819)
T ss_pred HHHhhCCCeEEEEecChhhCccH-------HHHHHHHHhHhhhcCceEEeeCCCccHHHHHHHhcc------cccccCCe
Confidence 99999999999999999999988 4688888888875554 5788999999997643222 12223455
Q ss_pred EEcCCCCCCCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHH
Q 009859 361 LMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSE 440 (523)
Q Consensus 361 ~~g~n~~~~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~ 440 (523)
.+|.| .+.+|.+.. ...+|+.+|+ .-+++|||+|.++|+..+.++++-.|- .|.++|+
T Consensus 591 ~~gyn-------~~g~f~~~~-------~~~~~l~~~~--l~qqegt~~~~~~rv~p~~~a~~~~gy------~lndia~ 648 (819)
T PRK08493 591 TVGYN-------EKGDFTISS-------LEKGDLALPA--LNQQEGTFTNIDKRVVPTNAALPFEGY------DLNDIAN 648 (819)
T ss_pred eEEec-------CCCceEecc-------CCcccccCcc--hhhcCcceEeecCceecCccccCcCCe------eHHHHHH
Confidence 77866 356777653 2448999995 456779999999999999999987774 3556899
Q ss_pred HhCCCCC
Q 009859 441 VAGMRLP 447 (523)
Q Consensus 441 ~lg~~~~ 447 (523)
.||+...
T Consensus 649 ~~~~~~~ 655 (819)
T PRK08493 649 ALGFDEE 655 (819)
T ss_pred HhCCChh
Confidence 9987643
No 39
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.6e-58 Score=506.40 Aligned_cols=376 Identities=14% Similarity=0.092 Sum_probs=287.9
Q ss_pred eeeeccCCCCCcEE-EEEECCEEEEEecCCC---CCCCccccccccccccCCCC-CCCCCCcEEeCC-------CCCeeE
Q 009859 69 ETIDVTDAVGSNIR-IDSRGPEVMRILPRLN---EDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-------DGRFKA 136 (523)
Q Consensus 69 ~siC~~C~~gC~i~-v~vr~g~v~rv~~~~~---~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g-------~g~~~~ 136 (523)
+|+|.+|+.||++. ++++||+|+||+|+++ +++|+|++|.||++.++.+| |+||++||+|+| +|+|++
T Consensus 1 pT~C~~C~~gCgi~~v~v~dG~vvrV~gn~~~~~~~~n~G~lC~KG~~~~~~ly~pdRL~~PLkR~g~k~G~~~dg~~~~ 80 (760)
T cd02760 1 PTYCYNCVAGPDFMAVKVVDGVATEIEPNFAAEDIHPARGRVCVKAYGLVQKTYNPNRVLQPMKRTNPKKGRNEDPGFVP 80 (760)
T ss_pred CccCCCccccCCeeEEEEECCEEEEEECCCccccCCCCCCccChhhhhhHhhhcCchhhcCCeeccCCCCCCcCCCCeeE
Confidence 58999999999996 6899999999999987 78899999999999999997 999999999973 479999
Q ss_pred cCHHHHHHHHHHHHHhcCCCC---------E-EEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc---cch-hhhhhcC
Q 009859 137 VNWRDALAVVAEVMLQAKPEE---------I-VGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---AQS-NADLRSG 202 (523)
Q Consensus 137 isWdeAl~~ia~~L~~~~~~~---------i-~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~---~~~-~~~~~~~ 202 (523)
|||||||++||++|++++++. + +.++++..+.+...++++|++.+|++|+++.... |.. ...+|..
T Consensus 81 ISWDEAld~IA~kL~~i~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~ 160 (760)
T cd02760 81 ISWDEALDLVAAKLRRVREKGLLDEKGLPRLAATFGHGGTPAMYMGTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEF 160 (760)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEecCCCchHHHHHHHHHHHHHhCCCcccccCCccccccchhhhhccc
Confidence 999999999999999876422 2 3344455545566788999999999998654432 211 1223321
Q ss_pred cccC-CCccccccCCEEEEEcCCCCcch-hhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHH-----
Q 009859 203 YIMN-TSISGLEKADCFLLVGTQPRVEA-AMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT----- 269 (523)
Q Consensus 203 ~~~~-~~~~di~~ad~il~~G~n~~~~~-p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~----- 269 (523)
...+ ..+.|+++||+||+||+|+..++ |+...++.++ +++|+|||+||||.+.|+..++ ||+|++.
T Consensus 161 ~~~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~a-r~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~ 239 (760)
T cd02760 161 WHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADA-RVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMI 239 (760)
T ss_pred ccCCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHH-HHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHH
Confidence 1111 24789999999999999998775 4455556555 4589999999999999988764 4554321
Q ss_pred --------------------------------------------------------------------------------
Q 009859 270 -------------------------------------------------------------------------------- 269 (523)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (523)
T Consensus 240 ~~Ii~e~~~~lyD~~Fl~~~Tn~p~Lv~~d~~~lr~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 319 (760)
T cd02760 240 HVMVHEQGLGKLDVPFLRDRTSSPYLVGPDGLYLRDAATGKPLVWDERSGRAVPFDTRGAVPAVAGDFAVDGAVSVDADD 319 (760)
T ss_pred HHHHhccccccchHHHHHHhCCCceEEecCCceeeccccCCeEEEECCCCccccccccccccccccccccccceeecccc
Confidence
Q ss_pred ----------------------------HHHHHcC-----cHHHHHHHhcC----------------CCcEEEEcCCccc
Q 009859 270 ----------------------------LLEIAEG-----RHPFFSAISNA----------------KNPVIIVGAGLFE 300 (523)
Q Consensus 270 ----------------------------l~~~~~g-----i~~~a~~l~~a----------------~~~~ii~g~~~~~ 300 (523)
++++ +| |+++|++|+++ ++++|++|.|+++
T Consensus 320 ~~~~~~~~~~~t~F~~l~e~~~~yTpE~aaeI-tGVpa~~Ir~lAr~~a~~a~~g~~~~~~g~~~~~~p~~i~~g~G~~~ 398 (760)
T cd02760 320 ETAIHQGVEGTTAFTMLVEHMRKYTPEWAESI-CDVPAATIRRIAREFLENASIGSTIEVDGVTLPYRPVAVTLGKSVNN 398 (760)
T ss_pred cccccCCcccccHHHHHHHHHhcCCHHHHHHH-HCcCHHHHHHHHHHHHhccccCcccccccccccCCceEEEeCccccc
Confidence 1111 23 68999999987 4577889999999
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHH-------hhHHhcC-----------------------------
Q 009859 301 RKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQ-------AAALDLG----------------------------- 344 (523)
Q Consensus 301 ~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~-------~g~~~~g----------------------------- 344 (523)
+.+|.+..+++..|+.+||+++++|++++......+. .+....|
T Consensus 399 ~~ng~~~~rAi~~L~aLtGnig~pGG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 478 (760)
T cd02760 399 GWGAFECCWARTLLATLVGALEVPGGTLGTTVRLNRPHDDRLASVKPGEDGFMAQGFNPTDKEHWVVKPTGRNAHRTLVP 478 (760)
T ss_pred ccccHHHHHHHHHHHHHhCCCCCCCccccCCCCcCcccccccccccCccccccccccccccccccCCCcccccccccccc
Confidence 9999999999999999999999998876332110000 0000000
Q ss_pred -----CCCC-----c-----------c---ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcc
Q 009859 345 -----LVPE-----S-----------S---NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRA 392 (523)
Q Consensus 345 -----~~p~-----~-----------~---~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~A 392 (523)
..|. . . ..+++||++|++++||+. .++|++++|+|++|+|+|+|+++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ik~~~~~~~Np~~s~pd~~~~~eal~kldf~V~~D~~~teTa~~A 558 (760)
T cd02760 479 IVGNSAWSQALGPTQLAWMFLREVPLDWKFELPTLPDVWFNYRTNPAISFWDTATLVDNIAKFPFTVSFAYTEDETNWMA 558 (760)
T ss_pred ccccchhhhcccccccccccccchhhhhccCCCCCceEEEEeCCCHHHhCCCHHHHHHHHhcCCeEEEEeCCcCchHhhh
Confidence 0000 0 0 023579999999999974 246889999999999999999999
Q ss_pred eEEecCCCCCCCCceeec----------CCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCC
Q 009859 393 NVILPASAFSEKEGTYEN----------TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRL 446 (523)
Q Consensus 393 DvvLP~a~~~E~~gt~~n----------~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~ 446 (523)
|||||+++|+|+++...+ .+++++..+|+|+|+||+|+||+|+.+||++||...
T Consensus 559 DiVLP~at~lEr~d~~~~~~~~~~~~~~~~~~~~~~~pvVeP~gEar~d~eI~~eLA~rlG~~~ 622 (760)
T cd02760 559 DVLLPEATDLESLQMIKVGGTKFVEQFWEHRGVVLRQPAVEPQGEARDFTWISTELAKRTGLLA 622 (760)
T ss_pred heeecCCCcccccCccccCCccccccccccceeeeeccCCCCCCCCcCHHHHHHHHHHHhCChh
Confidence 999999999999875321 356799999999999999999999999999999753
No 40
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=100.00 E-value=3.3e-58 Score=517.15 Aligned_cols=407 Identities=15% Similarity=0.137 Sum_probs=305.1
Q ss_pred ceeeeeeec-cCCCCCcEEEEEECCEEEEEecCCCC-----CCCccccccccccccCCCC-CCCCCCcEEeC---CCCCe
Q 009859 65 LKGTETIDV-TDAVGSNIRIDSRGPEVMRILPRLNE-----DINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRF 134 (523)
Q Consensus 65 l~~~~siC~-~C~~gC~i~v~vr~g~v~rv~~~~~~-----~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~g~~ 134 (523)
.+.+.|+|+ +|+.+|++.++|+||+|+||+|++++ ++|++++|.||++.++.+| |+||++||+|+ |+|+|
T Consensus 56 ~~~~~t~C~~~C~~~C~l~v~v~dG~v~~v~~~~~~~~~~~~~~~g~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~ 135 (814)
T PRK14990 56 EKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKF 135 (814)
T ss_pred ceEEeccCCCCcCCCCceEEEEECCEEEEEecCCCCCcccccccCcCcChhhHhHHHhhcChhhhCCCeEecccCCCCCe
Confidence 468899998 59999999999999999999999764 5788999999999999997 99999999997 46899
Q ss_pred eEcCHHHHHHHHHHHHHhcCC----CCEEEEeC-CCC-------cHHHHHHHHHHHHHcCCC-ccccCCCccc----hhh
Q 009859 135 KAVNWRDALAVVAEVMLQAKP----EEIVGIAG-RLS-------DAESMMALKDFLNRMGSN-NVWCEGTGAQ----SNA 197 (523)
Q Consensus 135 ~~isWdeAl~~ia~~L~~~~~----~~i~~~~g-~~~-------~~e~~~~~~~l~~~lG~~-~~~~~~~~~~----~~~ 197 (523)
++|||||||++||++|+++++ ++|+++.+ +.. ..|..+++++|++.+|.. +.....+.+. ...
T Consensus 136 ~~iSWdEAl~~Ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (814)
T PRK14990 136 ERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNY 215 (814)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhhCccceEEeecccccCcccccccccchHHHHHHHHhccCcccCCCCccHHHHhhhhhc
Confidence 999999999999999998653 67765433 211 125667889999988753 2222111111 112
Q ss_pred hhhcCcccCCCccccccCCEEEEEcCCCCcchhh---HHHHHHHHHHhCCCeEEEEcCCCCCCcc-hhc------cCCCH
Q 009859 198 DLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAM---VNARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGP 267 (523)
Q Consensus 198 ~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~---~~~~lr~a~~~~g~klv~idp~~~~t~~-~a~------~g~~~ 267 (523)
.+|.. ..+.++.|+++||+||+||+||.+++|. +..+++++++++|+|||+||||++.|++ .++ ||+|.
T Consensus 216 ~~G~~-~~~~~~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~irPGTD~ 294 (814)
T PRK14990 216 TYGGW-ADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDA 294 (814)
T ss_pred eeccC-CCCCCHHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCCCCcHH
Confidence 23321 2345789999999999999999999874 4567877765589999999999999974 553 45543
Q ss_pred H-----------------------------------------------------------HHHHHHcC-----cHHHHHH
Q 009859 268 K-----------------------------------------------------------TLLEIAEG-----RHPFFSA 283 (523)
Q Consensus 268 ~-----------------------------------------------------------~l~~~~~g-----i~~~a~~ 283 (523)
+ +++++ +| |+++|++
T Consensus 295 al~lam~~~ii~e~l~D~~fv~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe~aa~i-tGV~a~~I~~lA~~ 373 (814)
T PRK14990 295 ALVNGLAYVMITENLVDQPFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQI-TGVPADKIIKLARE 373 (814)
T ss_pred HHHHHHHHHHHHcCcccHHHHHhhccccCcccccccccccccHHHHhcccccCCCcCCHHHHHhh-HCcCHHHHHHHHHH
Confidence 2 22233 24 7899999
Q ss_pred HhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhh-----------HH-hhH---------Hh
Q 009859 284 ISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNA-----------AQ-AAA---------LD 342 (523)
Q Consensus 284 l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~-----------n~-~g~---------~~ 342 (523)
|+++++++|++|.|++++.+|.+..+++.+|+++||++|++|+|++...+.. +. .+. ..
T Consensus 374 ~a~~~~~~i~~g~g~~~~~~g~~~~rai~~L~aLtGnig~~Gg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (814)
T PRK14990 374 IGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIE 453 (814)
T ss_pred HHhcCCcEEEcchhHHHhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccCCCCCCCccceecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987754221110 00 000 00
Q ss_pred cC-----CCCCccc---cccCccEEEEEcCCCC-C--------CCCC---CCCceEEEEcccCCcccCcceEEecCCCCC
Q 009859 343 LG-----LVPESSN---SIESAKFVYLMGADDV-D--------LEKL---PNDAFVVYQGHHGDHGVYRANVILPASAFS 402 (523)
Q Consensus 343 ~g-----~~p~~~~---~~~~i~~l~~~g~n~~-~--------~~~l---~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~ 402 (523)
.| ....... .+++||++|++++||+ + .++| ++++|+|++|+|+|+|++|||||||+++|+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~ldf~Vv~D~~~t~Ta~~ADiVLPa~t~~ 533 (814)
T PRK14990 454 RGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTAS 533 (814)
T ss_pred cCCccccccccccCCccCCCCcEEEEEcCCCCeeecchHHHHHHHHhcccCCCCEEEEecCccCchhhhhheeccCCChH
Confidence 00 0000000 1468999999999984 3 1345 579999999999999999999999999999
Q ss_pred CCCceee-cC---CCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHh----CCCCCCcccc
Q 009859 403 EKEGTYE-NT---EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRTV----APNLLHVDER 471 (523)
Q Consensus 403 E~~gt~~-n~---eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~---~~~~~i~~~~~~~----~p~~~~~~~~ 471 (523)
|+++... +. ..+++..+|+|+|+||+|+||+|+.+||++||.+..| .+.+++++.+... .+.+.+++.+
T Consensus 534 E~~d~~~~~~~~~~~~v~~~~~~i~P~gesk~d~~I~~~LA~rlG~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~t~e~l 613 (814)
T PRK14990 534 EQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEF 613 (814)
T ss_pred hcCccccccccCCCceEEeeccccCCccccCCHHHHHHHHHHHhCCccccCCCCCHHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 9998543 12 3479999999999999999999999999999987444 3677777766432 2333355555
Q ss_pred CC
Q 009859 472 EP 473 (523)
Q Consensus 472 ~~ 473 (523)
.+
T Consensus 614 ~~ 615 (814)
T PRK14990 614 RK 615 (814)
T ss_pred Hh
Confidence 43
No 41
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.1e-55 Score=478.41 Aligned_cols=377 Identities=18% Similarity=0.180 Sum_probs=283.3
Q ss_pred cCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC--------------CCCCeeEcC
Q 009859 74 TDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG--------------ADGRFKAVN 138 (523)
Q Consensus 74 ~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~--------------g~g~~~~is 138 (523)
.|...|++.|+|+||+|+||+|+++++.+ |.||++..+.+| |+||++||+|+ |+|+|++||
T Consensus 2 ~~~~~~~~~v~v~dG~iv~v~g~~~~p~~----~~kg~~~~~~~y~pdRl~~PlkR~g~~~~~~~~~~g~rG~g~~~~IS 77 (609)
T cd02769 2 TASHWGAFRARVKDGRIVGVRPFEEDPDP----SPLLDGVPDAVYSPTRIKYPMVRRGWLEKGPGSDRSLRGKEEFVRVS 77 (609)
T ss_pred CCcCcCceEEEEECCEEEEeecCCCCCCc----chhhhcchhhccChhhccCCceechhhhcCCCCCcccCCCCCeEEec
Confidence 35556889999999999999999998866 789999999987 99999999996 358999999
Q ss_pred HHHHHHHHHHHHHhcCC----CCEEEEeC-----CCCcHHHHHHHHHHHHHcCCCccccCCCccch------hhhhhcCc
Q 009859 139 WRDALAVVAEVMLQAKP----EEIVGIAG-----RLSDAESMMALKDFLNRMGSNNVWCEGTGAQS------NADLRSGY 203 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~----~~i~~~~g-----~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~------~~~~~~~~ 203 (523)
|||||++||+||+++++ ++|++..+ +.... ...++++|++.+|+.+ .+....|.. ...+|...
T Consensus 78 WdEAld~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~-~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~G~~~ 155 (609)
T cd02769 78 WDEALDLVAAELKRVRKTYGNEAIFGGSYGWSSAGRFHH-AQSLLHRFLNLAGGYV-GSVGDYSTGAAQVILPHVVGSME 155 (609)
T ss_pred HHHHHHHHHHHHHHHHHhhCcHhhcccCcccccCccccc-chHHHHHHHhccCCcc-CCCCCccHHHHHhhhhheeCChh
Confidence 99999999999999864 56653322 12222 2356789999988633 222233321 12223211
Q ss_pred cc-C--CCccc-cccCCEEEEEcCCCCcchhh---------HHHHHHHHHHhCCCeEEEEcCCCCCCcchhc-------c
Q 009859 204 IM-N--TSISG-LEKADCFLLVGTQPRVEAAM---------VNARIRKTVRANNAKVGYIGPATDLNYDHQH-------L 263 (523)
Q Consensus 204 ~~-~--~~~~d-i~~ad~il~~G~n~~~~~p~---------~~~~lr~a~~~~g~klv~idp~~~~t~~~a~-------~ 263 (523)
.+ + .+..| +++||+||+||+||.+++|+ ...+++++. ++|+||||||||.+.|++.++ |
T Consensus 156 ~~~~~~~~~~d~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar-~~GaklIvIDPr~t~tA~~add~~l~irP 234 (609)
T cd02769 156 VYTEQQTSWPVIAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALK-DRGIRFISISPLRDDTAAELGAEWIAIRP 234 (609)
T ss_pred hccccCCChHHHHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHH-hCCCEEEEEcCCCCcchhhhcCcEeccCC
Confidence 11 1 23444 79999999999999998763 235666654 599999999999999988652 5
Q ss_pred CCCHHH----------------------------------------------HHHHHcC-----cHHHHHHHhcCCCcEE
Q 009859 264 GTGPKT----------------------------------------------LLEIAEG-----RHPFFSAISNAKNPVI 292 (523)
Q Consensus 264 g~~~~~----------------------------------------------l~~~~~g-----i~~~a~~l~~a~~~~i 292 (523)
|+|.+. ++++ +| |+++|++|++ ++++|
T Consensus 235 GTD~ALalam~~~ii~e~~~D~~Fv~~~t~Gfe~~~~~l~~~~dg~~~tpe~aa~i-tGV~ae~I~~lA~~~a~-~~~~i 312 (609)
T cd02769 235 GTDVALMLALAHTLVTEGLHDKAFLARYTVGFDKFLPYLLGESDGVPKTPEWAAAI-CGIPAETIRELARRFAS-KRTMI 312 (609)
T ss_pred CcHHHHHHHHHHHHHHcCCccHHHHHHHccCHHHHHHHhcCCCCCCcCCHHHHHHH-HCcCHHHHHHHHHHHhh-cCcEE
Confidence 777532 1122 23 6899999997 57889
Q ss_pred EEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcC-CCCC--------c------c-------
Q 009859 293 IVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLG-LVPE--------S------S------- 350 (523)
Q Consensus 293 i~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g-~~p~--------~------~------- 350 (523)
++|++++++.+|.+..+++.+|+++||++|++|+|+.......+..+....+ ..|. . .
T Consensus 313 ~~g~g~~~~~~g~~~~rai~~L~aLtGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 392 (609)
T cd02769 313 MAGWSLQRAHHGEQPHWMAVTLAAMLGQIGLPGGGFGFGYHYSNGGGPPRGAAPPPALPQGRNPVSSFIPVARIADMLLN 392 (609)
T ss_pred EecccchhhhcccHHHHHHHHHHHHhCCCCCCCCccccCcCcCCCCCCCCCCCCCCcccccCCCcceeecHHHHHHHHhC
Confidence 9999999999999999999999999999999998875443222211110000 0000 0 0
Q ss_pred -c----------cccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCc-eeec
Q 009859 351 -N----------SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEG-TYEN 410 (523)
Q Consensus 351 -~----------~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~g-t~~n 410 (523)
. ..++||++|++++||+. .++|++++|+|++|+|+|+|+++||||||+++|+|+++ ++.+
T Consensus 393 ~g~~~~~~~~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~al~~ldf~V~~D~~~teTa~~ADiVLPaat~~E~~d~~~~~ 472 (609)
T cd02769 393 PGKPFDYNGKKLTYPDIKLVYWAGGNPFHHHQDLNRLIRAWQKPETVIVHEPFWTATARHADIVLPATTSLERNDIGGSG 472 (609)
T ss_pred CCCeeeecCcccCCCCEEEEEECCCChHhcCcCHHHHHHHHhcCCEEEEecCCCCcchhhccEEecCCcHhhhcCccccc
Confidence 0 01469999999999974 24678899999999999999999999999999999986 5567
Q ss_pred CCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCC--CC-CHHHHHHHHH
Q 009859 411 TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLP--YD-TIGGIRSRIR 459 (523)
Q Consensus 411 ~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~--~~-~~~~i~~~~~ 459 (523)
.++++|..+|+|+|+||+|+||+|+.+||++||.+.. +. +.+++++.+.
T Consensus 473 ~~~~~~~~~~~i~P~ge~k~d~~I~~~LA~rlg~~~~~~~~~~~~~~~~~~~ 524 (609)
T cd02769 473 DNRYIVAMKQVVEPVGEARDDYDIFADLAERLGVEEQFTEGRDEMEWLRHLY 524 (609)
T ss_pred CCceEEEeeeccCCcccccCHHHHHHHHHHHhCCcccCCCCCcHHHHHHHHH
Confidence 7888999999999999999999999999999998743 33 6777776654
No 42
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=100.00 E-value=2.4e-55 Score=490.82 Aligned_cols=373 Identities=23% Similarity=0.285 Sum_probs=309.4
Q ss_pred eeeeeccCCCCCcEEEEEECCEEEE--EecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC----CCCCeeEcCHH
Q 009859 68 TETIDVTDAVGSNIRIDSRGPEVMR--ILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG----ADGRFKAVNWR 140 (523)
Q Consensus 68 ~~siC~~C~~gC~i~v~vr~g~v~r--v~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~----g~g~~~~isWd 140 (523)
+.++|++|+.+|++.+++++|++++ +.+++.+++|.|.+|.||+...+.++ ++||++||+|+ |+|+|++||||
T Consensus 41 ~~~~C~~C~~~C~i~~~v~~g~~~~~~~~~~~~~p~~~g~~C~kg~~~~~~~~~~~RL~~Pl~r~~g~rg~g~f~~ISWd 120 (765)
T COG0243 41 VKTICPGCGVGCGIRVHVKDGKVVRITIEGDPDHPINRGRLCAKGARGRERVYSPDRLKYPLLRRVGKRGEGKFVRISWD 120 (765)
T ss_pred cccccccCCCCCceEEEEECCEEEeecccCCcccccccccccccCcceeeeeeCchhhcCccccCCCCCCCCceEEecHH
Confidence 8899999999999999999999999 99999999999999999999998886 99999997665 47899999999
Q ss_pred HHHHHHHHH-HHhcCCCCEEEEeCCCCc--HHHHHHHHHHHHH-cCCCccccCCCccchh------hhhhcCcccCCCcc
Q 009859 141 DALAVVAEV-MLQAKPEEIVGIAGRLSD--AESMMALKDFLNR-MGSNNVWCEGTGAQSN------ADLRSGYIMNTSIS 210 (523)
Q Consensus 141 eAl~~ia~~-L~~~~~~~i~~~~g~~~~--~e~~~~~~~l~~~-lG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 210 (523)
||+++|+++ +++ .+..+++.... +|..+..++|++. +|++|++...+.|... ..+|.... ..++.
T Consensus 121 eA~~~ia~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~C~~~~~~~~~~~~G~~~~-~~~~~ 195 (765)
T COG0243 121 EALDLIAAKLLPR----IIGFYGSGALTTGNEAGYLAGKLARAFLGGNNIDHCGRYCHAAAAAGLPYTFGSGAA-TGSYP 195 (765)
T ss_pred HHHHHHHHHhcch----hhhccCchhhccCccchHHHhHHHHhcccCCCcCCCccccccchhhhhcccccCCCC-CccHh
Confidence 999999999 454 44556665544 7889999999996 9999999998887543 33443222 24788
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHH--HHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH------------
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNAR--IRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------ 270 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~--lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l------------ 270 (523)
|+++||+||+||.|+.+++|++..+ .+++.+++|+|||+|||+++.|++.++ ||+|.+.+
T Consensus 196 D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~li~~~~ 275 (765)
T COG0243 196 DIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGIAHVLIEENL 275 (765)
T ss_pred hHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCccccCCCcHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999988753 333334588999999999999999875 67775432
Q ss_pred ------HHHH---------------------------cC----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHH
Q 009859 271 ------LEIA---------------------------EG----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEA 313 (523)
Q Consensus 271 ------~~~~---------------------------~g----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~ 313 (523)
++.+ +| |+++|++++.++++++++|+|+++|.+|.+.++++.+
T Consensus 276 ~D~~Fl~~~t~~g~~~~~~~~~~~~~~~~t~e~~~~itGv~~~I~~~A~~~a~~~~~~~~~g~G~~qh~~G~~~~~ai~~ 355 (765)
T COG0243 276 YDEEFLAKYTNVGFDEFAYLLGLEDAEAKTPEWAEAITGVAEEIRQLARLFAAAKPVTILWGMGIQQHANGEQTVRAIAN 355 (765)
T ss_pred ccHHHHHHHhhcccchhhhhccccccccCCHHHHHHhhhHHHHHHHHHHHHhcCCceEEeeccchhHHHHhHHHHHHHHH
Confidence 1111 13 6789999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCceeecchhhHHhh-HHhcCCC----CCc-----------------------c-------ccccCccE
Q 009859 314 IAKKGNVIRPDWNGLNVLLLNAAQAA-ALDLGLV----PES-----------------------S-------NSIESAKF 358 (523)
Q Consensus 314 L~~~~g~~~~~g~g~~~l~~~~n~~g-~~~~g~~----p~~-----------------------~-------~~~~~i~~ 358 (523)
|+.++|++|++|+|++.++++.|.+| ..++|.. |.. . ..+++||+
T Consensus 356 L~ll~Gnig~pGgg~~~~~g~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ik~ 435 (765)
T COG0243 356 LALLTGNIGKPGGGVFPLRGHSNAQGGARDVGGLVKPLPGLPVVRAKTAIPWGRPTDAAAKPGLSTADRALLEGPYPIKA 435 (765)
T ss_pred HHHHhCCCCCCCCCCCcccCcccccccccccccCCCCCccccccchhhhhhhhCcchhhhCCcceeecccccccCCCeEE
Confidence 99999999999999988888877766 3333321 100 0 01458999
Q ss_pred EEEEcCCCCCC--------CCCCCC-ceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCC-ceEeecCccCCCCCC
Q 009859 359 VYLMGADDVDL--------EKLPND-AFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG-CTQQTLPAVPTVGDA 428 (523)
Q Consensus 359 l~~~g~n~~~~--------~~l~~~-~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg-~~q~~~~~v~p~ge~ 428 (523)
+|++++||+.. ..+.+. +|+|++|+++|+|+++||+|||+++|+|++|.+.|.+. ++|..+|+++|+||+
T Consensus 436 l~~~~~Np~~~~p~~~~~~~~~~~~~~~vVv~D~~~t~Ta~~ADivLPa~~~~E~~~~~~~~~~~~v~~~~~~v~P~gea 515 (765)
T COG0243 436 LFVYGGNPVVSAPDDRNVKKALLRDDEFVVVIDIFMTETAKYADIVLPATTFLEKDDIYTNAGRSYVQLRRKVVEPPGEA 515 (765)
T ss_pred EEEeCCCchhcCchhhHHHHHHhcCCCeEEEEccCCCHHHHhhhhhCCccccccccCccccCCcceEEEeeeccCCCccc
Confidence 99999999751 122344 59999999999999999999999999999999999999 999999999999999
Q ss_pred ccHHHHHHHHHHHhCCC
Q 009859 429 RDDWKIIRALSEVAGMR 445 (523)
Q Consensus 429 r~d~~Il~~La~~lg~~ 445 (523)
|+||+|+.+|+++++..
T Consensus 516 ~~d~~ii~~la~~~~~~ 532 (765)
T COG0243 516 RPDYWIIIELAKRLLGE 532 (765)
T ss_pred cccHHHHHHHHHHhccc
Confidence 99999999999987653
No 43
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=100.00 E-value=6.6e-54 Score=476.21 Aligned_cols=394 Identities=17% Similarity=0.146 Sum_probs=304.7
Q ss_pred ccccceeeeeeeccCCCCCcEEEEE------------------------------------------ECCEEEE--EecC
Q 009859 61 RNWELKGTETIDVTDAVGSNIRIDS------------------------------------------RGPEVMR--ILPR 96 (523)
Q Consensus 61 R~Wel~~~~siC~~C~~gC~i~v~v------------------------------------------r~g~v~r--v~~~ 96 (523)
.|-+-+++.++|.+|-+|||..|++ +||++++ |.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~cgy~~~~~~~~~~g~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~i~~d 84 (806)
T TIGR02693 5 PPKNAKKYNQTCHFCIVGCGYHVYVWPVNKEGGVKPEQNAFGLDLSTPQPPLAGQSYTPTMHNVTVGRDGRQYNVVIVPD 84 (806)
T ss_pred CCCChhheeeeccEEEeccCceeeeCCCCCcCCCCccccceeccccccCCCcccccccccceeeEEccCCcEEEEEEeCC
Confidence 3567788999999999999999875 1368888 9999
Q ss_pred CCCCCCccccccccccccCCCC-C-----CCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCC----CCEEEEe----
Q 009859 97 LNEDINEEWISDKTRFCYDGLK-S-----QRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKP----EEIVGIA---- 162 (523)
Q Consensus 97 ~~~~~n~~~lC~kGr~~~~~~~-~-----~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~----~~i~~~~---- 162 (523)
+++++|+|++|.||++..+.+| | +||++||+|+ +|+|++|||||||++||++|+++++ ++|+++.
T Consensus 85 ~~~pvn~G~~C~rG~~~~~~~y~~~~~~~~RL~~Pl~R~-~g~~~~iSWdeAld~iA~~l~~i~~~~G~~sv~~~~~~~~ 163 (806)
T TIGR02693 85 KECVVNRGLYSIRGGTMALTVWSLDRGTQDRLTYPLLRV-GDQFQATSWDDALTLMALLTKKIRDRDGNDDIAVKCFDHG 163 (806)
T ss_pred CCCCCCCCccccchhhHHHhhhcccCCCCccccCCeEec-CCcEEEccHHHHHHHHHHHHHHHHhhcCCccEEEEecccC
Confidence 9999999999999998887775 4 8999999999 7899999999999999999998763 6788763
Q ss_pred CCCCcHHHHHHHHHHH-HHcCCCccccCCCcc-----chhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHH--H
Q 009859 163 GRLSDAESMMALKDFL-NRMGSNNVWCEGTGA-----QSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVN--A 234 (523)
Q Consensus 163 g~~~~~e~~~~~~~l~-~~lG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~--~ 234 (523)
|+....|+.+.+.+|+ ..+|++|++++.+.| ....++|.. ..+.+++|+++||+||+||+||.+++|.+. +
T Consensus 164 g~~~~~e~~~~~~k~~~~~lgt~n~~~~~r~~~~s~~~~~~~~G~g-~~~~~~~D~~~Ad~iv~~G~Np~et~~~~~~~~ 242 (806)
T TIGR02693 164 GAGGGFENTWGAGKLFFAALSVKHIRIHNRPAYNSEVHGTREMGVG-ELNNTYEDARLADTIVLWGANSYETQTNYFLNH 242 (806)
T ss_pred CCCCchHHHHHHHHHHHHHcCCCcccccccccccccchhhhhhcCC-CCCCCHHHHHhCCEEEEECCChHHhhhhhhHhh
Confidence 4555678777766665 589999988765433 222334432 233478999999999999999999998643 2
Q ss_pred H---HH---HHHHh--------CCCeEEEEcCCCCCCcchhc-------------cCCCHHHH-----------------
Q 009859 235 R---IR---KTVRA--------NNAKVGYIGPATDLNYDHQH-------------LGTGPKTL----------------- 270 (523)
Q Consensus 235 ~---lr---~a~~~--------~g~klv~idp~~~~t~~~a~-------------~g~~~~~l----------------- 270 (523)
. ++ ++.++ +|+|||+||||.+.|+..++ ||+|.+.+
T Consensus 243 ~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~ad~~a~d~~~~l~i~PGTD~aL~~a~~~~Ii~~g~~D~~F 322 (806)
T TIGR02693 243 WLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVAEQTAPDRVLHLRINLGTDYALFNALATYVWEKGWYDMAF 322 (806)
T ss_pred hhhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhhcccccccceEeccCCCcHHHHHHHHHHHHHHCCCcCHHH
Confidence 1 22 22221 25799999999999977642 57775421
Q ss_pred -H-----------------------HHHcC-----cHHHHHHHhcCC------CcEEEEcCCcccccCHHHHHHHHHHHH
Q 009859 271 -L-----------------------EIAEG-----RHPFFSAISNAK------NPVIIVGAGLFERKDKDAIFSTVEAIA 315 (523)
Q Consensus 271 -~-----------------------~~~~g-----i~~~a~~l~~a~------~~~ii~g~~~~~~~~~~~~~~~~~~L~ 315 (523)
+ ++ +| |+++|++|++++ +++|++|.|+.++.++.+..+++.+|+
T Consensus 323 i~~~~~t~gfd~~~~~~~~t~e~aa~i-tGV~~~~I~~~A~~~a~~k~~~~~~~~~~~~~~G~~~~~~~~~~~~ai~~L~ 401 (806)
T TIGR02693 323 IQARTHMTLFEDAVKSLKMSMAQAERI-TGVSRAEIEKAAEWIAKPKAGGKKRRTMTIYEKGIIWGNDNYDQVAALVQLA 401 (806)
T ss_pred HhcccCCCCHHHHHHHccCCHHHHHHH-HCcCHHHHHHHHHHHHhcccccCccceEEEecchheeccccHHHHHHHHHHH
Confidence 1 11 24 689999999876 678899999999999999999999999
Q ss_pred HHcCCCCCCCCceeecchhhHHhhHHhcC-CCCCcc-------ccccCccEEEEEcCCCCCC----C-------------
Q 009859 316 KKGNVIRPDWNGLNVLLLNAAQAAALDLG-LVPESS-------NSIESAKFVYLMGADDVDL----E------------- 370 (523)
Q Consensus 316 ~~~g~~~~~g~g~~~l~~~~n~~g~~~~g-~~p~~~-------~~~~~i~~l~~~g~n~~~~----~------------- 370 (523)
.+||++|++|+|+..+.+. ..|..... ..|... ...+++|++|+.++||+.. .
T Consensus 402 ~ltGniG~pGgG~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~i~~g~~k~l~v~g~Np~~s~pn~~~~~~~~~~~~~~v 479 (806)
T TIGR02693 402 VATHNIGRPGTGCVRQGGH--QEGYVRPPAIHRGGPPVYVDQFLIEGKGKFYWVWGCDPYLTTPNAQVFRKVIHERTEKV 479 (806)
T ss_pred HHhCCCCCCCCcccccCCc--cCCCcCCcccCCCCCHHHHHHHHhCCCceEEEEEecChhccCcChHHHHHHHhhhhHHH
Confidence 9999999999987654321 11111000 001100 1357889999999999631 1
Q ss_pred --C-------------------CCC-CceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCC
Q 009859 371 --K-------------------LPN-DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDA 428 (523)
Q Consensus 371 --~-------------------l~~-~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~ 428 (523)
+ +++ .+|+|++|+|+|+|+++||||||+++++|++|++.|.++++|+.+|+++|+||+
T Consensus 480 ~~al~~~~~~~~~~~~~~~~~a~~~~~~f~V~~D~~~t~ta~~ADvvLPaa~~~E~~~~~~n~~~~i~~~~~~v~p~gea 559 (806)
T TIGR02693 480 KDAMSAAGEGTIQEMVQKILDALYQGGLFLVVQDIYPTKTAEAAHLILPAAGWGEMNLTSMNGERRMRLYEKFMDPPGEA 559 (806)
T ss_pred HHHHHhcccccchhhhhhhhhhhccCCCEEEEEcCCCCccHhhCcEEEcCCcceeecCcEEcCccceEEeccccCCCccC
Confidence 1 112 259999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCC---------------CCCCCCHHHHHHHHH
Q 009859 429 RDDWKIIRALSEVAGM---------------RLPYDTIGGIRSRIR 459 (523)
Q Consensus 429 r~d~~Il~~La~~lg~---------------~~~~~~~~~i~~~~~ 459 (523)
|+||+|+.+|+++||. .++|.+.++++++..
T Consensus 560 r~d~~I~~~La~rlg~~~~~~g~~~~~~~f~~f~~~~~e~~~~~~~ 605 (806)
T TIGR02693 560 KPDCLIAAWVANTIAELYRAEGKFEEAKKFEGFDWKTEEDAFLDGA 605 (806)
T ss_pred cCHHHHHHHHHHHHHHHhhcccccccccccccCCCCCHHHHHHHHH
Confidence 9999999999999961 156788888886543
No 44
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=100.00 E-value=1e-53 Score=448.52 Aligned_cols=353 Identities=16% Similarity=0.171 Sum_probs=271.9
Q ss_pred eeeccCCCCCc-EEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCCCCCeeEcCHHHHHHHHH
Q 009859 70 TIDVTDAVGSN-IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 147 (523)
Q Consensus 70 siC~~C~~gC~-i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia 147 (523)
++|++|+.||+ +.++++||+|++++ ++|+|||++++++| ++||++||+|+ +|+|+++|||||++.++
T Consensus 2 ~~C~~C~~gC~~l~v~v~~g~v~~v~----------~~C~kg~~~~~~~~~~~Rl~~Pl~R~-~g~~~~isWdeAl~~ia 70 (421)
T TIGR03129 2 VVCPFCGCLCDDIEVEVEGNKIVKVE----------NACRIGAAKFKEAEESHRITRPMIRK-NGDGKEVSYEEAIEKAA 70 (421)
T ss_pred cccCCcccccCeEEEEEECCEEEEEe----------cCCcccHHHHhhccCCcccCCCeEcC-CCCeeeCChHHHHHHHH
Confidence 68999999998 99999999999996 48999999999997 89999999998 89999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhh--hhcCcccCCCccccc-cCCEEEEEcCC
Q 009859 148 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNAD--LRSGYIMNTSISGLE-KADCFLLVGTQ 224 (523)
Q Consensus 148 ~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~di~-~ad~il~~G~n 224 (523)
++|++++. ..++.++..+.|..+++++|++.+|+ ++++..+.|..... +........++.|++ +||+||+||+|
T Consensus 71 ~~l~~~~~--~~~~~~~~~~~e~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n 147 (421)
T TIGR03129 71 EILKNAKR--PLIYGWSSTSCEAQRAGLELAEKLGA-VIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVIIYWGTN 147 (421)
T ss_pred HHHHhhcC--CeEEEcccCCHHHHHHHHHHHHHHCC-CccccchhccccHHHHHHhcCCccccHHHHhhcCCEEEEEccC
Confidence 99999864 34466666778889999999999998 45544444322211 111122234678997 69999999999
Q ss_pred CCcchhhHHHHH--------HHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHH-------------cC-
Q 009859 225 PRVEAAMVNARI--------RKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA-------------EG- 276 (523)
Q Consensus 225 ~~~~~p~~~~~l--------r~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~-------------~g- 276 (523)
|.+++|.+..|+ +++. ++|++|++|||+.+.|+..++ ||+|...+..+. +|
T Consensus 148 ~~~~~p~~~~r~~~~~~~~~~~~~-~~g~~lividp~~s~t~~~ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv 226 (421)
T TIGR03129 148 PMHAHPRHMSRYSVFPRGFFTQRG-REDRTVIVVDPRKTDTAKLADYHLQIKPGSDYELISALRAVLRGKEPQPEEVAGI 226 (421)
T ss_pred ccccCchHHhhhhhhhhhhhhhcc-cCCCEEEEECCCCCCcchhhcceeccCCCCcHHHHHHHHHHHccCCcchhhhcCC
Confidence 999999877665 2222 478999999999999988775 688876543221 23
Q ss_pred ----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhc-----CC--
Q 009859 277 ----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL-----GL-- 345 (523)
Q Consensus 277 ----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~-----g~-- 345 (523)
++++|++|+++++++|++|.+..+++++......+..+...++.+.+ .++..+.+..|..|.... |.
T Consensus 227 ~~~~i~~la~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~l~g~~~~~G~~~~~~~~~g~~~ 304 (421)
T TIGR03129 227 PKEKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVEIAIELVKDLNKYTK--FTIIPMRGHYNVAGFNQVLTWETGYPF 304 (421)
T ss_pred CHHHHHHHHHHHHhCCceEEEEecccccccCcchHHHHHHHHHHHhCcccc--eeeeeCcCcCCccccccccccccCCCc
Confidence 67899999999999999999998776555555444444444443332 233344444443333211 11
Q ss_pred -----------CCCcc-----ccccCccEEEEEcCCCCC------CCCCCCCceEEEEcccCCcccCcceEEecCCC-CC
Q 009859 346 -----------VPESS-----NSIESAKFVYLMGADDVD------LEKLPNDAFVVYQGHHGDHGVYRANVILPASA-FS 402 (523)
Q Consensus 346 -----------~p~~~-----~~~~~i~~l~~~g~n~~~------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~-~~ 402 (523)
.|... ...+++|++|++|+||+. .++|++++ +|++|+|+|+|+++||||||+++ |+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~g~i~~l~~~g~Np~~~~p~~~~~al~~~~-~Vv~d~~~teTa~~ADvvLP~~~~~~ 383 (421)
T TIGR03129 305 GVDFSRGYPRYNPGETTTVDLLKRKEVDAALIIGSDPGAHFPQDAVKHLAEIP-VIVIDPHPTPTTEIADVVIPVAIDGI 383 (421)
T ss_pred cccHhhcCCCCCCCcchHHHHHhcCCCCEEEEeCCChhhhCcHHHHHhhccCC-EEEECCCCCCccccCCEEecCCccce
Confidence 01010 135789999999999974 24677777 59999999999999999999997 89
Q ss_pred CCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHh
Q 009859 403 EKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 442 (523)
Q Consensus 403 E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~l 442 (523)
|++|+|+|.+|++|.++|+++|++ |+||+||++|+++|
T Consensus 384 E~~g~~~~~~~~~~~~~~~v~p~~--~~~~~i~~~La~~~ 421 (421)
T TIGR03129 384 EAGGTAYRMDNVPIRLRKVIESPE--PSDEEILKKILERV 421 (421)
T ss_pred ecCccEEecCCeEEEeeccCCCCC--CCHHHHHHHHHhhC
Confidence 999999999999999999999998 99999999999986
No 45
>PRK09939 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-53 Score=460.23 Aligned_cols=360 Identities=17% Similarity=0.225 Sum_probs=299.4
Q ss_pred cccccccccCCCC-CCCCCCcEEeC-CCCCeeEcCHHHHHHHHHHHHHhcC-CCCEEEEeCCCCcHHHHHHHHHHHHHcC
Q 009859 106 ISDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVVAEVMLQAK-PEEIVGIAGRLSDAESMMALKDFLNRMG 182 (523)
Q Consensus 106 lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~g~~~~isWdeAl~~ia~~L~~~~-~~~i~~~~g~~~~~e~~~~~~~l~~~lG 182 (523)
+..--+|++..++ ++||++||+|. ++|+|++|||||||++|+++|++++ ++++++++|++.++|+.|++++|++.+|
T Consensus 92 ~~~l~~~~~~~l~~~~RL~~Pl~r~~g~~~~~~ISWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~G 171 (759)
T PRK09939 92 VQSLLTWGDHELEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYG 171 (759)
T ss_pred HHHHhhhcccccCCCCcccCCeEecCCCCcEEEccHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhC
Confidence 3334456777886 89999999997 4789999999999999999999986 4789999999999999999999999999
Q ss_pred CCccccCCCccchh------hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 183 SNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 183 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
++|++.+.+.|... ..+|.. ....+++|+++||+||+||+||.+++|++..+|++++ ++|+|||+|||+.+.
T Consensus 172 tnn~~~~s~~C~~~~~~~l~~~~G~g-~~t~~l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~-~rGakiIvIDPr~~~ 249 (759)
T PRK09939 172 SNNFPDCSNMCHEPTSVGLAASIGVG-KGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALV-KRGAKMIAINPLQER 249 (759)
T ss_pred CcccCCCCCCCchHHHHHHHHhcCCC-CCCCCHHHHhhCCEEEEeCCChHHHHHHHHHHHHHHH-HCCCEEEEECCCCcc
Confidence 99998777777432 223322 1224789999999999999999999999999999876 499999999997743
Q ss_pred ------------------Ccchhc------cCCCHHHH------------------------------------------
Q 009859 257 ------------------NYDHQH------LGTGPKTL------------------------------------------ 270 (523)
Q Consensus 257 ------------------t~~~a~------~g~~~~~l------------------------------------------ 270 (523)
++..++ ||+|.+.+
T Consensus 250 gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD~ALl~gm~~~li~~~~~~~~~~~~~~~D~~FI~~~t~Gfe~~~~~v 329 (759)
T PRK09939 250 GLERFTAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDV 329 (759)
T ss_pred cccccccccccchhccccchhhhCeeeCCCCChHHHHHHHHHHHHHHCCCcccccccccccCHHHHHHhcCCHHHHHHHH
Confidence 344443 56655322
Q ss_pred --------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHH
Q 009859 271 --------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQ 337 (523)
Q Consensus 271 --------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~ 337 (523)
+++ +| |+++|++|+++++++|++|+|+.+|.+|...++++.+|+.++|++|++|+|+.++++++|.
T Consensus 330 ~~~~~e~v~~~-tGv~~~~I~~~A~~~a~a~~~ii~~gmGitqh~~G~~~v~~i~nL~lltGniGrpGaG~~plrG~~Nv 408 (759)
T PRK09939 330 LNSEWKDIERI-SGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHSNV 408 (759)
T ss_pred hhCCHHHHHHH-HCcCHHHHHHHHHHHHhCCCEEEEeCCcccccCcHHHHHHHHHHHHHHhCCCCCCCcccccCcCcccC
Confidence 111 23 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCCCc-------------------c----------ccccCccEEEEEcCCCCC--------CCCCCCCceEEE
Q 009859 338 AAALDLGLVPES-------------------S----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVY 380 (523)
Q Consensus 338 ~g~~~~g~~p~~-------------------~----------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~ 380 (523)
+|..++|..|.. . ...++||++|++|.||+. .++|++++|+|+
T Consensus 409 qG~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~G~~~~~~~~a~~~G~ikal~~~G~Np~~s~Pd~~~~~~AL~~ld~~V~ 488 (759)
T PRK09939 409 QGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVH 488 (759)
T ss_pred CCccccCCCCCCCHHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCceEEEEeCCChhccCcCHHHHHHHHhcCCcEEE
Confidence 999888865321 0 135889999999999974 246889999999
Q ss_pred EcccCCc----ccCcceEEecCCCCCCC----Cc----eeecCCCceEeecCccCCCCC-CccHHHHHHHHHHHhCCC--
Q 009859 381 QGHHGDH----GVYRANVILPASAFSEK----EG----TYENTEGCTQQTLPAVPTVGD-ARDDWKIIRALSEVAGMR-- 445 (523)
Q Consensus 381 ~d~~~t~----ta~~ADvvLP~a~~~E~----~g----t~~n~eg~~q~~~~~v~p~ge-~r~d~~Il~~La~~lg~~-- 445 (523)
+|.++|+ |+++ |||||+++++|+ .| |+.|.++++|+.+++++|+++ .|+||+|+.+||++|..+
T Consensus 489 ~d~~ln~~~~~t~~~-dvVLP~~~~~E~d~~~~g~q~~t~~~~~~~v~~s~~~~~P~g~~~~se~~I~~~lA~~~~~~~~ 567 (759)
T PRK09939 489 VATKLNRSHLLTARH-SYILPVLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQSV 567 (759)
T ss_pred EeeeecCcccchhhh-cEEecCCCccccccccCCCceeEEEcCCceEEccCCCCCCCCccccCHHHHHHHHHHHhccCCC
Confidence 9999996 6676 999999999998 46 888999999999999999997 799999999999998322
Q ss_pred CCCC----CHHHHHHHHHHhCCCCCCcc
Q 009859 446 LPYD----TIGGIRSRIRTVAPNLLHVD 469 (523)
Q Consensus 446 ~~~~----~~~~i~~~~~~~~p~~~~~~ 469 (523)
++|. +.++|++++.+..|.|..++
T Consensus 568 ~~~~~~~~~~~~i~~~i~~~~p~~~~~~ 595 (759)
T PRK09939 568 VAWEYLVEDYDRIRNDIEAVLPEFADYN 595 (759)
T ss_pred CCcccchhCHHHHHHHHHHhCCCccCHH
Confidence 5554 57799999999889876554
No 46
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=100.00 E-value=1.6e-52 Score=462.08 Aligned_cols=361 Identities=16% Similarity=0.224 Sum_probs=298.4
Q ss_pred cccccccccCCCC-CCCCCCcEEeC-CCCCeeEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCC
Q 009859 106 ISDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGS 183 (523)
Q Consensus 106 lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~ 183 (523)
+...-.+++..+. ++||++||+|. |+|+|++|||||||++||++|+++.+++++++.|++.++|+.+++++|++.+|+
T Consensus 83 ~~~l~~~~~~~l~~~~RL~~Pm~R~~g~g~~~~ISWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt 162 (743)
T TIGR01701 83 VSELRTLDSHELEKLGRLTYPLSLRPGSDHYTPISWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGS 162 (743)
T ss_pred HHHHhcCCHHHhccCCCCCCCEEecCCCCCEEEccHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCC
Confidence 4445566677775 89999999997 467999999999999999999998778999999998999999999999999999
Q ss_pred CccccCCCccchh------hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC-
Q 009859 184 NNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL- 256 (523)
Q Consensus 184 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~- 256 (523)
+|++.+.+.|... ..+|... .+.+++|+++||+||+||.||..++|....++++++ ++|+|||+|||+.+.
T Consensus 163 ~n~~~~s~~C~~~~~~al~~~~G~~~-~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~-~rGakiIvIdP~~~~~ 240 (743)
T TIGR01701 163 NNLPDCSNMCHEPSSVALKRSIGIGK-GSVNLEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAK-KRGAKIIAINPLRERG 240 (743)
T ss_pred CCcCCCcccccchhhHHHHHhcCCCC-CCCCHhHHHhCCEEEEEecCcccccHHHHHHHHHHH-HCCCEEEEECCCCccc
Confidence 9998777766432 2333321 224789999999999999999999999999999886 499999999998754
Q ss_pred --------------C---cchhc------cCCCHHHH-------------------------------------------
Q 009859 257 --------------N---YDHQH------LGTGPKTL------------------------------------------- 270 (523)
Q Consensus 257 --------------t---~~~a~------~g~~~~~l------------------------------------------- 270 (523)
| +..++ ||+|.+.+
T Consensus 241 l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~AL~~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~ 320 (743)
T TIGR01701 241 LERFWIPQIPESMLTGGGTQISSEYYQVRIGGDIALFNGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNW 320 (743)
T ss_pred ccccccccccchhccccchHhhCeeecCCCCcHHHHHHHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCH
Confidence 1 34443 56665321
Q ss_pred ---HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHh
Q 009859 271 ---LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALD 342 (523)
Q Consensus 271 ---~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~ 342 (523)
+++ +| |+++|++|+++++++|++|+|+.+|.+|.+..+++.+|+.++|++|++|+|+.++++++|.+|...
T Consensus 321 e~~~~~-tGv~~~~I~~~A~~~a~a~~~~i~~g~G~~q~~~g~~~~~ai~~L~~L~GniG~~G~G~~~~~g~~n~qG~~~ 399 (743)
T TIGR01701 321 NDIERS-SGLSQEEILEFAKLLANSRRVVFCWAMGLTQHAHGVDNISQVANLALLRGNIGKPGAGVCPIRGHSNVQGDRT 399 (743)
T ss_pred HHHHHH-HCcCHHHHHHHHHHHHhCCCEEEEECccccccchHHHHHHHHHHHHHHhCCCCCCCCCcCCCCCCCCCCCCcc
Confidence 111 23 688999999999999999999999999999999999999999999999999998888888888776
Q ss_pred cCCCCCc-------------------c----------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccC
Q 009859 343 LGLVPES-------------------S----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHG 385 (523)
Q Consensus 343 ~g~~p~~-------------------~----------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~ 385 (523)
+|..+.. . ...+++|++|++|+||+. .++|++++|+|++|.++
T Consensus 400 ~g~~~~~~~~~~~~l~~~~g~~~p~~~g~~~~~~~~a~~~g~ikal~~~ggNp~~~~Pd~~~~~~AL~kld~~V~~d~~l 479 (743)
T TIGR01701 400 MGITEKPEEEFLARLSQIYGFTPPDWPGDTTVAMIEAILTGKVRAFICLGGNFLEAMPDTAAIERALRQLDLRVHVATKL 479 (743)
T ss_pred cCCCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCCceEEEEeCCChHhcCCCHHHHHHHHHcCCeEEEEeCCc
Confidence 6653211 0 136789999999999974 24688999999999999
Q ss_pred Cccc---CcceEEecCCCCCCCCcee--------ecCCCceEeecCccCCCC-CCccHHHHHHHHHHHhCCC--CCC---
Q 009859 386 DHGV---YRANVILPASAFSEKEGTY--------ENTEGCTQQTLPAVPTVG-DARDDWKIIRALSEVAGMR--LPY--- 448 (523)
Q Consensus 386 t~ta---~~ADvvLP~a~~~E~~gt~--------~n~eg~~q~~~~~v~p~g-e~r~d~~Il~~La~~lg~~--~~~--- 448 (523)
|+|+ .+||||||+++++|++|++ .+.+++++..+++++|++ |+|+||+|+++||++||.+ ++|
T Consensus 480 t~Ta~~a~~advVLP~~~~~E~~~~~~~~q~vt~~~s~~~v~~~~~~v~P~~~e~rsd~~I~~~LA~~lg~~~~~~w~~~ 559 (743)
T TIGR01701 480 NRSHVLAKEEALILPVLGRYEQDGQGTGKQAVSVESSMRMVHFSRGILKPRGAELRSEWAIIAEIAKALLPETPVAWEIL 559 (743)
T ss_pred CcchhhhcCCeEEECCCCcccccCccCcccceeEEcCCceEEeecCcCCCCCcccCCHHHHHHHHHHHHCCCCCCCcccc
Confidence 9996 6679999999999999863 466789999999999997 9999999999999999975 444
Q ss_pred -CCHHHHHHHHHHhCCCCCCcc
Q 009859 449 -DTIGGIRSRIRTVAPNLLHVD 469 (523)
Q Consensus 449 -~~~~~i~~~~~~~~p~~~~~~ 469 (523)
++.+++++++....|.|..++
T Consensus 560 ~~~~~~ir~~i~~~~p~~~~~~ 581 (743)
T TIGR01701 560 VDTYDQIRDAIAATNPGYDDIN 581 (743)
T ss_pred ccCHHHHHHHHHHhCcCccchH
Confidence 377889999998888765443
No 47
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=100.00 E-value=2.2e-52 Score=471.80 Aligned_cols=380 Identities=13% Similarity=0.097 Sum_probs=287.9
Q ss_pred cceeeeeeeccCCCCCcEEEEE--ECCEEEEEecCCCCCCC--------------------------ccccccccccccC
Q 009859 64 ELKGTETIDVTDAVGSNIRIDS--RGPEVMRILPRLNEDIN--------------------------EEWISDKTRFCYD 115 (523)
Q Consensus 64 el~~~~siC~~C~~gC~i~v~v--r~g~v~rv~~~~~~~~n--------------------------~~~lC~kGr~~~~ 115 (523)
+.+.++|+|.+|..+|+|+|+| ++|+|+||.|++.+|.| .+.+|.||+...+
T Consensus 71 ~~~~~~t~C~~C~~~Cgl~v~V~~~~g~v~kI~Gnp~~p~s~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~C~KG~a~~~ 150 (1031)
T PRK14991 71 QQRVANTQCLGCWTQCGVRVRVDNATNKILRIAGNPYHPLSTDHHIDMSTPVKEAFESLSGESGLEGRSTACARGNAMLE 150 (1031)
T ss_pred CceEEeeECCCCcCCCCeEEEEECCCCeEEEeeCCCCCccccCCCCcccCCHHHHHhhhccccccccCCCcccchhhhHh
Confidence 4568999999999999999999 46999999999999988 4999999999999
Q ss_pred CCC-CCCCCCcEEeC---CCCCeeEcCHHHHHHHHHH-----------HHHhcC--------------CCCEEEEeCCCC
Q 009859 116 GLK-SQRLNDPMIRG---ADGRFKAVNWRDALAVVAE-----------VMLQAK--------------PEEIVGIAGRLS 166 (523)
Q Consensus 116 ~~~-~~Rl~~Pl~R~---g~g~~~~isWdeAl~~ia~-----------~L~~~~--------------~~~i~~~~g~~~ 166 (523)
.+| |+||++||+|+ |+|+|++|||||||++|++ +|++++ ++++.++.+...
T Consensus 151 ~~y~p~Rl~~PLkR~g~RGeg~w~~ISWdeAl~eIaegg~lf~e~~v~~L~~i~~~~~~id~~~p~~Gp~a~~~~~~~~~ 230 (1031)
T PRK14991 151 QLDSPYRVLQPLKRVGKRGSGKWQRISFEQLVEEVVEGGDLFGEGHVDGLRAIRDLDTPIDAKNPEYGPKANQLLVTNAS 230 (1031)
T ss_pred hhhCcccccCCeeccCCCCCCceeEccHHHHHHHHHhccccccchhHHHHHHHHhhhccccccchhhCceeEEEEEEecC
Confidence 997 99999999996 4679999999999999999 898874 245544443222
Q ss_pred cHHHHHHHHHHH-HHcCCCccccCCCccchhhhhhcCcccC------CCccccccCCEEEEEcCCCCcchhh---HHHHH
Q 009859 167 DAESMMALKDFL-NRMGSNNVWCEGTGAQSNADLRSGYIMN------TSISGLEKADCFLLVGTQPRVEAAM---VNARI 236 (523)
Q Consensus 167 ~~e~~~~~~~l~-~~lG~~~~~~~~~~~~~~~~~~~~~~~~------~~~~di~~ad~il~~G~n~~~~~p~---~~~~l 236 (523)
+.....++++|+ +.+|++|++.+.+.|.....++....+| ....|++++|+||+||+||.+++.. ...++
T Consensus 231 ~~g~~~~~~rf~~~~~Gt~n~~~~~~~C~~~~~~g~~~~~g~~~~~~~~~~D~~~a~~il~~G~Np~~s~~~~~~~~~~l 310 (1031)
T PRK14991 231 DEGRDAFIKRFAFNSFGTRNFGNHGSYCGLAYRAGSGALMGDLDKNPHVKPDWDNVEFALFIGTSPAQSGNPFKRQARQL 310 (1031)
T ss_pred CcchHHHHHHHHHHhcCCCCccCCCccchHHHHhhHHHhccCCCCCCCccchhhcCcEEEEeCcChhHhCCchHHHHHHH
Confidence 222356788997 5999999988888886654333322222 3467999999999999999998633 33446
Q ss_pred HHHHHhCCCeEEEEcCCCCCCcc----hhc------cCCCHHH-------------------------------------
Q 009859 237 RKTVRANNAKVGYIGPATDLNYD----HQH------LGTGPKT------------------------------------- 269 (523)
Q Consensus 237 r~a~~~~g~klv~idp~~~~t~~----~a~------~g~~~~~------------------------------------- 269 (523)
.++.++.|+|+||||||++.|+. .++ ||+|.+.
T Consensus 311 ~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~ALalgmi~~Iie~~~yD~~fl~~~~~~a~~~~ge~~~Tn 390 (1031)
T PRK14991 311 ANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSALAMGMIRWIIDNQRYNADYLAQPGVAAMQAAGEASWTN 390 (1031)
T ss_pred HHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHHHHHHHHHHHHcCCcCHHHHhchhhhhhhhcccccccc
Confidence 66654335999999999998652 222 4554321
Q ss_pred --------------------------------------------------------------------------------
Q 009859 270 -------------------------------------------------------------------------------- 269 (523)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (523)
T Consensus 391 a~~LV~~d~~~~~~g~~lr~~d~g~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~l~~~~~v~~~dG~~v~v~~~f~ 470 (1031)
T PRK14991 391 ATHLVIADPGHPRYGQFLRASDLGLPFEGEARGDGEDTLVVDAADGELVPATQAQPARLFVEQYVTLADGQRVRVKSSLQ 470 (1031)
T ss_pred CceEEEecCCCccccceeehhhcccccccccccCCCCCEEEECCCCcccccccccccccccceeEeccCCCeeeeeEHHH
Confidence
Q ss_pred -------------HHHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeec
Q 009859 270 -------------LLEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVL 331 (523)
Q Consensus 270 -------------l~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l 331 (523)
.+++ +| |+++|++|+++++.+++++.|..+|.+|.+..+++.+|+.++|+++++|+++...
T Consensus 471 ~lke~~~~~Tpe~~a~i-~GVp~e~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~aLtGni~~~GG~~~~~ 549 (1031)
T PRK14991 471 LLKEAARKLSLAEYSEQ-CGVPEAQIIALAEEFTSHGRKAAVISHGGTMSGNGFYNAWAIMMLNALIGNLNLKGGVVVGG 549 (1031)
T ss_pred HHHHHHhhCCHHHHHHH-HCcCHHHHHHHHHHHHhcCCceEEEecccceeccHHHHHHHHHHHHHHhCCCCCCCCcccCC
Confidence 1111 24 7899999999999999999999999999999999999999999999988643210
Q ss_pred chhhHHh---------------------------hH-----H----hcCC--CCC-------c------------ccccc
Q 009859 332 LLNAAQA---------------------------AA-----L----DLGL--VPE-------S------------SNSIE 354 (523)
Q Consensus 332 ~~~~n~~---------------------------g~-----~----~~g~--~p~-------~------------~~~~~ 354 (523)
. ..+.. .. . ..|. .|. . ...++
T Consensus 550 ~-~~~~~~~g~~~~~~~~~g~~~p~g~~~~r~~~~~~~~~~~~~~~~~g~~~~P~~~~~~p~~~~~~~e~l~~~~~g~Py 628 (1031)
T PRK14991 550 G-KFPGFGDGPRYNLASFAGKVKPKGVSLSRSKFPYEKSSEYRRKVEAGQSPYPAKAPWYPFVAGLLTEMLTAALEGYPY 628 (1031)
T ss_pred C-ccCccCCCccccccccccccccccccccccccccccchHHhhhhhcCCCCCcccccccccccchHHHHHHHHHcCCCC
Confidence 0 00000 00 0 0111 111 0 01345
Q ss_pred CccEEEEEcCCCCC--C-------CCCC---CCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCC----CceEee
Q 009859 355 SAKFVYLMGADDVD--L-------EKLP---NDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE----GCTQQT 418 (523)
Q Consensus 355 ~i~~l~~~g~n~~~--~-------~~l~---~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~e----g~~q~~ 418 (523)
+||++|++++||+. + ++|+ +++|+|++|+|+|+|++|||||||+++++|++|...... ...+..
T Consensus 629 ~ikali~~~~NP~~s~p~~~~~~~~aL~d~~~L~f~V~~D~~~teTa~~AD~VLP~~~~~E~~~~~~~~~~~~~~~~~~r 708 (1031)
T PRK14991 629 PLKAWINHMSNPIYGVPGLRAVIEEKLKDPKKLPLFISIDAFINETTALADYIVPDTHTYESWGFTAPWGGVPTKASTAR 708 (1031)
T ss_pred CceEEEEcCCChhhcCCcHHHHHHHHhcccccCCEEEEEeCCcCchHhhCcEEecCCCchhhccCcccccccCccceeeE
Confidence 89999999999963 1 2454 799999999999999999999999999999998643332 234566
Q ss_pred cCccCCCCCCccHHH------HHHHHHHHhCCC
Q 009859 419 LPAVPTVGDARDDWK------IIRALSEVAGMR 445 (523)
Q Consensus 419 ~~~v~p~ge~r~d~~------Il~~La~~lg~~ 445 (523)
+|+|+|++++++||+ |+.+||++||++
T Consensus 709 ~pvveP~~e~~~d~~~~~~e~i~~~LAkrlGl~ 741 (1031)
T PRK14991 709 WPVVEPRTAKTADGQPVCMESFLIAVAKRLQLP 741 (1031)
T ss_pred ecccCCCcCcCCccchhhHHHHHHHHHHHcCCC
Confidence 799999999999988 899999999974
No 48
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=5.6e-52 Score=434.42 Aligned_cols=348 Identities=18% Similarity=0.165 Sum_probs=263.5
Q ss_pred eeeccCCCCCc-EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHH
Q 009859 70 TIDVTDAVGSN-IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAE 148 (523)
Q Consensus 70 siC~~C~~gC~-i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~ 148 (523)
.+|++|+.||+ +.++++||+|+|+. .+|+||++.+++++ +||++||+|. +++|||||++++++
T Consensus 2 ~~C~~C~~gC~~l~~~~~~g~v~~~~----------~lC~kg~~~~~~~~-dRl~~Pl~r~-----~~isWdeAl~~ia~ 65 (415)
T cd02761 2 VVCPFCGLLCDDIEVEVEDNKITKVR----------NACRIGAAKFARYE-RRITTPRIDG-----KPVSLEEAIEKAAE 65 (415)
T ss_pred cccCCCCccccceEEEEECCEEEEcC----------CCCcchHHHHhhcc-cccCCCeecC-----CCCCcHHHHHHHHH
Confidence 68999999996 99999999999963 39999999999999 9999999985 89999999999999
Q ss_pred HHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhh--hhcCcccCCCccccc-cCCEEEEEcCCC
Q 009859 149 VMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNAD--LRSGYIMNTSISGLE-KADCFLLVGTQP 225 (523)
Q Consensus 149 ~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~di~-~ad~il~~G~n~ 225 (523)
+|++++.. .++.++....|..+.+++|++.+|+ ++++..+.|..... +......+.++.|++ +||+||+||+||
T Consensus 66 ~L~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~ 142 (415)
T cd02761 66 ILKEAKRP--LFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIVYWGTNP 142 (415)
T ss_pred HHHhhcCC--EEEEcccchHHHHHHHHHHHHHHCC-CccccccccccchHHHHHhCCCccccHHHHHhcCCEEEEEcCCc
Confidence 99998643 3345555555778889999999997 55554444432211 111123345788996 899999999999
Q ss_pred CcchhhHHHHH--------HHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHH-------------cC--
Q 009859 226 RVEAAMVNARI--------RKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA-------------EG-- 276 (523)
Q Consensus 226 ~~~~p~~~~~l--------r~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~-------------~g-- 276 (523)
.+++|++..++ |++. ++|+||++|||+.+.|+..++ ||+|...+..+. +|
T Consensus 143 ~~~~p~~~~~~~~~~~~~~~~~~-~~g~kli~idp~~t~ta~~Ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv~ 221 (415)
T cd02761 143 MHAHPRHMSRYSVFPRGFFREGG-REDRTLIVVDPRKSDTAKLADIHLQIDPGSDYELLAALRALLRGAGLVPDEVAGIP 221 (415)
T ss_pred cccccHHhhhhhhhhhhhccccC-CCCCEEEEEcCCCcchhhhcceEEecCCCCcHHHHHHHHHHHhccccccccccCcC
Confidence 99999877332 1111 478999999999999988765 799987653332 23
Q ss_pred ---cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhc-----CC---
Q 009859 277 ---RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL-----GL--- 345 (523)
Q Consensus 277 ---i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~-----g~--- 345 (523)
++++|+.|+++++++|++|.++.++.++.....++..+...++... +.++..+.+..|..|...+ |.
T Consensus 222 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~~~~--~~~~~~l~g~~n~~G~~~~~~~~~g~~~~ 299 (415)
T cd02761 222 AETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNEYT--KFALLPLRGHYNVRGFNQVLTWLTGYPFR 299 (415)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhCccc--ceeeeeccCcCCccCcccccccccCCCcc
Confidence 6789999999999999999999877665444444444444444332 1234444444444443222 11
Q ss_pred ----------CCCcc-----ccccCccEEEEEcCCCCC--C----CCCCCCceEEEEcccCCcccCcceEEecCCC-CCC
Q 009859 346 ----------VPESS-----NSIESAKFVYLMGADDVD--L----EKLPNDAFVVYQGHHGDHGVYRANVILPASA-FSE 403 (523)
Q Consensus 346 ----------~p~~~-----~~~~~i~~l~~~g~n~~~--~----~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~-~~E 403 (523)
.|... ...+++|++|++|+||+. + ++|++++ +|++|+|+|+|+++||||||+++ |+|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~al~~~~-~Vv~d~~~teta~~ADvvLP~a~~~~E 378 (415)
T cd02761 300 VDFSRGYPRYNPGEFTAVDLLAEGEADALLIIASDPPAHFPQSAVKHLAEIP-VIVIDPPPTPTTRVADVVIPVAIPGIE 378 (415)
T ss_pred eecccCCCCCCCchhhHHHHHhcCCCCEEEEEcCCCcccCCHHHHHhhccCC-EEEECCCCCcccccCcEEEeCCccccc
Confidence 01110 136789999999999974 1 3477775 79999999999999999999998 799
Q ss_pred CCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHh
Q 009859 404 KEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 442 (523)
Q Consensus 404 ~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~l 442 (523)
++|||+|.|||+|.++|+++| +.++||+||..|++++
T Consensus 379 ~~Gt~~n~eg~~q~~~~~~~~--~~~~~~~il~~l~~~~ 415 (415)
T cd02761 379 AGGTAYRMDGVVVLPLKAVET--ERLPDEEILKQLLEKV 415 (415)
T ss_pred cCceEEEeCCceEeeeccCCC--CCCCHHHHHHHHHhhC
Confidence 999999999999999999988 4599999999999864
No 49
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=100.00 E-value=4.5e-52 Score=464.47 Aligned_cols=359 Identities=17% Similarity=0.213 Sum_probs=269.4
Q ss_pred CcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC--------------CCCeeEcCHHHHH
Q 009859 79 SNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA--------------DGRFKAVNWRDAL 143 (523)
Q Consensus 79 C~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g--------------~g~~~~isWdeAl 143 (523)
|++.++|+||+|++|+|++.++.+ |.+|+...+.+| |+||++||+|+| +|+|++|||||||
T Consensus 5 ~~l~~~V~dG~i~~v~g~~~~p~~----~~~~~~~~~~~y~pdRl~~PL~R~g~~~~~~~~~~~~rG~g~f~~iSWDEAl 80 (770)
T TIGR00509 5 GVFTATVQDGRIVAVTPFESDPNP----TPMLEGVPDQVYSESRIKYPMVRKGFLENGVKSDRSGRGREEFVRVSWDEAL 80 (770)
T ss_pred CceEEEEECCEEEEeecCCCCCCc----cHhHhcchhhccChhhccCCeeecchhhccCCCccccCCCCCeEEecHHHHH
Confidence 889999999999999999988876 345667778886 999999999964 4789999999999
Q ss_pred HHHHHHHHhcCC----CCEEEEe-C----CCCcHHHHHHHHHHHHHcCCCccccCCCccc------hhhhhhcCcccC--
Q 009859 144 AVVAEVMLQAKP----EEIVGIA-G----RLSDAESMMALKDFLNRMGSNNVWCEGTGAQ------SNADLRSGYIMN-- 206 (523)
Q Consensus 144 ~~ia~~L~~~~~----~~i~~~~-g----~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~------~~~~~~~~~~~~-- 206 (523)
++||++|+++++ ++|+++. + +.... +.+++++|++.+|+.+. +..+.|. ....++....++
T Consensus 81 ~~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~g~~ 158 (770)
T TIGR00509 81 DLVAEELKRVRKTHGPSAIFAGSYGWKSAGRLHN-ASTLLQRMLNLLGGYVG-HAGDYSTGAAQVIMPHVVGDMEVYEQQ 158 (770)
T ss_pred HHHHHHHHHHHHhcCChhheecccCcccCCcccc-cHHHHHHHHHhcCCCcC-CCCCcchhhHhhccCceeecccccCCc
Confidence 999999998864 5675433 1 22233 35678999999986432 2222222 122233221122
Q ss_pred CCcc-ccccCCEEEEEcCCCCcchhh--------HHHHHHHHHHhCCCeEEEEcCCCCCCcchh-c------cCCCHHH-
Q 009859 207 TSIS-GLEKADCFLLVGTQPRVEAAM--------VNARIRKTVRANNAKVGYIGPATDLNYDHQ-H------LGTGPKT- 269 (523)
Q Consensus 207 ~~~~-di~~ad~il~~G~n~~~~~p~--------~~~~lr~a~~~~g~klv~idp~~~~t~~~a-~------~g~~~~~- 269 (523)
.+.. ++++||+||+||+||.+++|. ...+++++. ++|+||||||||++.|++.+ + ||+|.+.
T Consensus 159 ~~~~~~~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~-~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~AL~ 237 (770)
T TIGR00509 159 TTWPVILENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLK-AKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVALM 237 (770)
T ss_pred CCcHHHHhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHH-HcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHHHH
Confidence 1233 479999999999999999763 335677764 59999999999999999863 3 5777532
Q ss_pred ---------------------------------------------HHHHHcC-----cHHHHHHHhcCCCcEEEEcCCcc
Q 009859 270 ---------------------------------------------LLEIAEG-----RHPFFSAISNAKNPVIIVGAGLF 299 (523)
Q Consensus 270 ---------------------------------------------l~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~ 299 (523)
++++ +| |+++|++|+++ +++|++|++++
T Consensus 238 lam~~~ii~e~l~D~~fi~~~t~gfe~~~~~l~~~~~g~~~tpe~aa~i-tGV~a~~I~~lA~~~a~~-~~~i~~g~g~~ 315 (770)
T TIGR00509 238 LGLAHTLVTEGLYDKDFLAKYTSGFEKFLPYLLGETDGTPKTAEWASKI-TGVPAETIKELARLFASK-RTMLAAGWSMQ 315 (770)
T ss_pred HHHHHHHHHcccccHHHHHHHcccHHHHHHHhcCCCCCCcCCHHHHHHH-HCcCHHHHHHHHHHHHhc-cceeeccchhh
Confidence 1222 24 68999999976 67888899999
Q ss_pred cccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcC------------------------CCC--------
Q 009859 300 ERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLG------------------------LVP-------- 347 (523)
Q Consensus 300 ~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g------------------------~~p-------- 347 (523)
++.+|.+..+++.+|+++||++|++|+|+.......+..+....+ ..|
T Consensus 316 ~~~~g~~~~rai~~L~altGnig~~Ggg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (770)
T TIGR00509 316 RMQHGEQPHWMLVTLAAMLGQIGLPGGGFGFSYHYSGGGTPSASGPALSQGSNSVSTKAPEWLDDGGASVIPVARISDAL 395 (770)
T ss_pred hhhcchHHHHHHHHHHHHhCcCCCCCcccccccCcCCCCCCCccCCCCcccCCccccccchhhhccccccccHHHHHHHh
Confidence 999999999999999999999999998875432211110000000 011
Q ss_pred ---Cc-------cccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCce--
Q 009859 348 ---ES-------SNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGT-- 407 (523)
Q Consensus 348 ---~~-------~~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt-- 407 (523)
.. ....++||++|++|+||+. .++|++++|+|++|+|+|+|+++||||||+++|+|+++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~ik~l~v~g~Np~~s~p~~~~~~~aL~~ldf~Vv~D~f~teTa~~ADiVLPaat~lE~~d~~~ 475 (770)
T TIGR00509 396 LNPGKEIDYNGKELKLPDIKMVYWAGGNPFHHHQDTNRLIKAWRKLETIIVHEPQWTPTAKHADIVLPATTSFERNDLTM 475 (770)
T ss_pred hCCCCeeccCCccccCCCeEEEEECCCChhHhCCCHHHHHHHHhcCCEEEEecCcCCchHhhCCEEeCCCchhhcccccc
Confidence 00 0012589999999999974 246889999999999999999999999999999999854
Q ss_pred ---eecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 009859 408 ---YENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 448 (523)
Q Consensus 408 ---~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~ 448 (523)
+. ..++|..+|+|+|+||+|+||+|+.+||++||.+..|
T Consensus 476 ~~~~~--~~~~~~~~~~v~P~ge~r~d~~I~~~LA~rlg~~~~~ 517 (770)
T TIGR00509 476 AGDYS--NTGILAMKQVVPPQFEARNDYDIFAALAERLGVEEAF 517 (770)
T ss_pred ccccc--CCeeEEeecccCCCccccCHHHHHHHHHHHhCccccc
Confidence 43 3579999999999999999999999999999987444
No 50
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=100.00 E-value=7.3e-52 Score=464.94 Aligned_cols=393 Identities=17% Similarity=0.140 Sum_probs=268.3
Q ss_pred cccCcccccccccccccccceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCC
Q 009859 46 CPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLND 124 (523)
Q Consensus 46 CPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~ 124 (523)
|+.++++..+..+..+. .-....++|.+| |++.++|+||+|++|+|+++++.+.+ |.||. .+.+| |+||++
T Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~l~~~V~dG~v~~v~gd~~~~~~~~--~~~g~--~~~~y~pdRl~~ 90 (822)
T TIGR02164 19 GGPSLLTPLNALAAAAI-NEDEWKTTGSHW---GAFRAKVKNGKVVEVKPFELDKYPTE--MINGI--RGMVYNPSRVRY 90 (822)
T ss_pred hccccccccchhhcccc-ccccccccCCCc---CceEEEEECCEEEEEecCCCCCccch--hhhcc--hhhccCchhccC
Confidence 45556666555444332 111223567776 46999999999999999986665544 87773 46676 999999
Q ss_pred cEEeC--------------CCCCeeEcCHHHHHHHHHHHHHhcCC----CCEEE-EeCCCCcHHHHHHHHHHHHHcCCC-
Q 009859 125 PMIRG--------------ADGRFKAVNWRDALAVVAEVMLQAKP----EEIVG-IAGRLSDAESMMALKDFLNRMGSN- 184 (523)
Q Consensus 125 Pl~R~--------------g~g~~~~isWdeAl~~ia~~L~~~~~----~~i~~-~~g~~~~~e~~~~~~~l~~~lG~~- 184 (523)
||+|+ |+|+|++|||||||++||++|+++++ ++|++ ..+...+........+|++.+|+.
T Consensus 91 PlkR~~~~~~~~~~~~g~RG~g~f~rISWDEAld~IA~kl~~i~~~yG~~si~~g~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (822)
T TIGR02164 91 PMVRLDWLKKRHKSNTHQRGDNRFVRVTWDEALDLFYEELERVQKQYGPSALHAGQTGWRSTGQFHSCTSHMQRAVGMHG 170 (822)
T ss_pred CceecchhhccCCCCcccCCCCCEEEecHHHHHHHHHHHHHHHHHhhCcceeEecccccccCCCCCchHHHHHHHhcccC
Confidence 99995 47899999999999999999998864 56654 222111111112234566766652
Q ss_pred c-cccCCCccch------hhhhhcCccc--CCCcc-ccccCCEEEEEcCCCCcch---------hhHH--HHHHHHHHhC
Q 009859 185 N-VWCEGTGAQS------NADLRSGYIM--NTSIS-GLEKADCFLLVGTQPRVEA---------AMVN--ARIRKTVRAN 243 (523)
Q Consensus 185 ~-~~~~~~~~~~------~~~~~~~~~~--~~~~~-di~~ad~il~~G~n~~~~~---------p~~~--~~lr~a~~~~ 243 (523)
+ +......|.. ...++....+ +.+.. ++++||+||+||+||.+++ |... .++|++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~g 250 (822)
T TIGR02164 171 NYVKKIGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAG 250 (822)
T ss_pred CCcCCCCCccHHHHhhhcCceecchhhccCCCChHHHHHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCC
Confidence 3 3222222221 1222321111 12333 4699999999999998663 4321 1234433323
Q ss_pred CCeEEEEcCCCCCCcch-hc------cCCCHHH----------------------------------------------H
Q 009859 244 NAKVGYIGPATDLNYDH-QH------LGTGPKT----------------------------------------------L 270 (523)
Q Consensus 244 g~klv~idp~~~~t~~~-a~------~g~~~~~----------------------------------------------l 270 (523)
|+||||||||++.|++. ++ ||+|.+. +
T Consensus 251 gaklIvIDPr~t~tA~~~ad~~l~irPGTD~AL~lam~~vii~e~l~D~~Fi~~~t~Gfe~~~~~l~~~~~g~~~tpe~a 330 (822)
T TIGR02164 251 EINVISIDPVVTKTQAYLGCEHLYVNPQTDVALMLALAHTLYSENLYDKKFIEGYCLGFEEFLPYVLGSKDGVAKTPEWA 330 (822)
T ss_pred CceEEEECCCCCchhhhccCeEeccCCCcHHHHHHHHHHHHHHCCCccHHHHHHhcccHHHHHHHhccccCCCcCCHHHH
Confidence 59999999999999885 33 6776532 1
Q ss_pred HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecc-----hhhHH---
Q 009859 271 LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLL-----LNAAQ--- 337 (523)
Q Consensus 271 ~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~-----~~~n~--- 337 (523)
+++ +| |+++|++|++ +++.+++|++..++.+|.+..+++.+|+++||++|++|+|+..-. +..+.
T Consensus 331 a~i-tGV~ae~I~~lA~~~a~-~~~~~~~g~g~~~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~~~~~~~~~~~~~ 408 (822)
T TIGR02164 331 AKI-CGVEAEVIRDLARMLVK-GRTQLIFGWCIQRQQHGEQPYWMGAVLAAMIGQIGLPGGGISYGHHYSSIGVPSSGAA 408 (822)
T ss_pred HHH-HCcCHHHHHHHHHHHHh-cCCEEEEeccchhhhcchHHHHHHHHHHHHhCcCCCCCCcccccccccCCCCcccccc
Confidence 122 24 6899999998 456777899999899999999999999999999999998764210 00000
Q ss_pred -hhHHh----------------cCC---CCCcc-----cc-------------ccCccEEEEEcCCCCC--------CCC
Q 009859 338 -AAALD----------------LGL---VPESS-----NS-------------IESAKFVYLMGADDVD--------LEK 371 (523)
Q Consensus 338 -~g~~~----------------~g~---~p~~~-----~~-------------~~~i~~l~~~g~n~~~--------~~~ 371 (523)
.+... .+. .|... .. .++||++|++++||+. .++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~g~~~~~~~~~~~~~~ik~l~v~g~Np~~~~p~~~~~~~a 488 (822)
T TIGR02164 409 APGAFPRNLDEGQKPKFDNSDFKGYSSTIPVARWIDAILEPGKTIDHNGSKVTYPPIKMMIFSGCNPWHHHQDRNRMKQA 488 (822)
T ss_pred cCcCccccCCcccccccccccccCccccccHhHHHHHhcCCCceeccCCcccCCCCeEEEEEcCCCHHhcCcCHHHHHHH
Confidence 00000 000 01000 00 1369999999999974 246
Q ss_pred CCCCceEEEEcccCCcccCcceEEecCCCCCCCCcee--ec-CCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 009859 372 LPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTY--EN-TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 448 (523)
Q Consensus 372 l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~--~n-~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~ 448 (523)
|++++|+|++|+|+|+|++|||||||+++|+|+++.. .+ ...++|..+|+|+|+||+|+||+|+.+||++||.+..|
T Consensus 489 l~kldf~V~~D~~~teTa~~ADiVLPaat~~E~~d~~~~g~~~~~~~~~~~~~i~P~geak~d~eI~~~LA~rlG~~~~~ 568 (822)
T TIGR02164 489 FQKLETVVTIDVSWTATCRFSDIVLPACTQFERNDIDVYGSYSNRGIIAMQKLVDPLFDSRSDFEIFTELCRRFGKEKEY 568 (822)
T ss_pred HhcCCEEEEecCcCChhhhhCCEEecCCcccccccccccccccCcccceeccccCCcccccCHHHHHHHHHHHhCChhhc
Confidence 8899999999999999999999999999999999532 11 13579999999999999999999999999999986444
No 51
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.7e-51 Score=438.48 Aligned_cols=330 Identities=16% Similarity=0.211 Sum_probs=275.9
Q ss_pred cccCCCC-CCCCCCcEEeC-CCCCeeEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccC
Q 009859 112 FCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCE 189 (523)
Q Consensus 112 ~~~~~~~-~~Rl~~Pl~R~-g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~ 189 (523)
+++..++ ++||++||+|. |+|+|++|||||||++||++|+++.+++++++.+++.++|+.+++++|++.+|++|++.+
T Consensus 54 ~~~~~l~~~~RL~~Pm~R~~G~g~~~~ISWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~ 133 (574)
T cd02767 54 WSDYELEHLGRLTYPMRYDAGSDHYRPISWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDC 133 (574)
T ss_pred CChhhccCCCccCCCEEecCCCCCEEEecHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCC
Confidence 3444565 89999999997 468999999999999999999999888999999988889999999999999999999887
Q ss_pred CCccchh------hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC--------
Q 009859 190 GTGAQSN------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD-------- 255 (523)
Q Consensus 190 ~~~~~~~------~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~-------- 255 (523)
.+.|... ..+|.. ..+.+++|+++||+||+||.||..++|....++++++ ++|+|||+|||+.+
T Consensus 134 s~~C~~~~~~al~~~~G~~-~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~-~rGakIIvIdP~~~~gl~~f~~ 211 (574)
T cd02767 134 SNMCHEPSSVGLKKSIGVG-KGTVSLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAK-KRGGKIIVINPLREPGLERFAN 211 (574)
T ss_pred CCCcchHHHhHHHHhcCCC-CCCCCHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHH-HCCCEEEEECCCcccccccccc
Confidence 7776432 223322 2235789999999999999999999999999999886 49999999999875
Q ss_pred ---------CCcchhc------cCCCHHHHHHH--------------------------------------------HcC
Q 009859 256 ---------LNYDHQH------LGTGPKTLLEI--------------------------------------------AEG 276 (523)
Q Consensus 256 ---------~t~~~a~------~g~~~~~l~~~--------------------------------------------~~g 276 (523)
.+++.++ ||+|.+.+..+ .+|
T Consensus 212 p~~~~~~lt~~a~~Ad~~l~irPGtD~AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tG 291 (574)
T cd02767 212 PQNPESMLTGGTKIADEYFQVRIGGDIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASG 291 (574)
T ss_pred ccccccccccchhhhCeeeCCCCCcHHHHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhC
Confidence 2334443 56665432100 023
Q ss_pred -----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCC---
Q 009859 277 -----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPE--- 348 (523)
Q Consensus 277 -----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~--- 348 (523)
|+++|++|+++++++|++|+|+.+|.+|.+.++++.+|+.++|++|++|+|+.++++++|.+|...+|+.+.
T Consensus 292 v~~e~I~~~A~~~a~a~~~ii~~g~Gi~q~~~g~~~v~ai~~L~~LtGniGr~G~G~~~~~g~snvqG~~~~g~~~~~~~ 371 (574)
T cd02767 292 LSREEIEAFAAMYAKSERVVFVWGMGITQHAHGVDNVRAIVNLALLRGNIGRPGAGLMPIRGHSNVQGDRTMGITEKPFP 371 (574)
T ss_pred cCHHHHHHHHHHHHhCCCEEEEecchhcccchHHHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCCCCCcccCCCCCCCH
Confidence 678999999999999999999999999999999999999999999999999998888889888777765321
Q ss_pred ----------------cc----------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCccc---Cc
Q 009859 349 ----------------SS----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGV---YR 391 (523)
Q Consensus 349 ----------------~~----------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta---~~ 391 (523)
.. ...+++|++|++|+||+. .++|++++|+|++|.++|+|+ .+
T Consensus 372 ~~~~~l~~~~g~~~P~~~g~~~~~~~~a~~~g~ik~l~~~ggNp~~~~pd~~~~~~AL~kld~~V~~d~~~~~t~~~~~~ 451 (574)
T cd02767 372 EFLDALEEVFGFTPPRDPGLDTVEAIEAALEGKVKAFISLGGNFAEAMPDPAATEEALRRLDLTVHVATKLNRSHLVHGE 451 (574)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCceEEEEecCCHHhcCcCHHHHHHHHhcCCeEEEEecccchhhcccCC
Confidence 11 136789999999999974 246889999999999999999 47
Q ss_pred ceEEecCCCC--------------CCCCceeecC-------CCceEeecCcc------CCCCCCccHHHHHHHHHHHhC
Q 009859 392 ANVILPASAF--------------SEKEGTYENT-------EGCTQQTLPAV------PTVGDARDDWKIIRALSEVAG 443 (523)
Q Consensus 392 ADvvLP~a~~--------------~E~~gt~~n~-------eg~~q~~~~~v------~p~ge~r~d~~Il~~La~~lg 443 (523)
||||||++++ +|++|++++. +.++++.+++| +|+||+|+||+|+.+|+++|+
T Consensus 452 adiILP~~~~~e~d~~~~~~~~~~~E~~~~~v~~s~g~~~~~~~~~~se~ai~~~~~~~~~ge~r~dw~i~~~la~~i~ 530 (574)
T cd02767 452 EALILPCLGRTEIDMQAGGAQAVTVEDSMSMTHTSRGRLKPASRVLLSEEAIVAGIAGARLGEAKPEWEILVEDYDRIR 530 (574)
T ss_pred CeEEeCCCccccccccccccccceEecCCceEecCCCccCCCCccceehhhhcccccccCCCCCcccHHHHHHHHHHHH
Confidence 9999999999 9999987753 35688999999 999999999999999999887
No 52
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=100.00 E-value=5.1e-50 Score=450.21 Aligned_cols=363 Identities=18% Similarity=0.167 Sum_probs=250.1
Q ss_pred CcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC--------------CCCCeeEcCHHHHH
Q 009859 79 SNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG--------------ADGRFKAVNWRDAL 143 (523)
Q Consensus 79 C~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~--------------g~g~~~~isWdeAl 143 (523)
|++.++|+||+|++|+|++.++... .|.|| ..+.+| |+||++||+|+ |+|+|++|||||||
T Consensus 51 ~~l~~~V~dG~vv~v~g~~~~~~~~--~~~~~--~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f~~ISWDEAl 126 (825)
T PRK15102 51 GAFRAKVKNGRFVEAKPFELDKYPT--KMING--IKGHVYNPSRIRYPMVRLDWLRKRHKSDTSQRGDNRFVRVSWDEAL 126 (825)
T ss_pred CceEEEEECCEEEEEecCCCCcCcc--hHHhc--hhhhccChhhccCCceechhhhccCCCCcccCCCCcEEEecHHHHH
Confidence 5799999999999999976533221 15555 445676 99999999996 37899999999999
Q ss_pred HHHHHHHHhcCC----CCEEEE-eCCCCcHHHHHHHHHHHHHcCCC-c-cccCCCccch------hhhhhcCcccC--CC
Q 009859 144 AVVAEVMLQAKP----EEIVGI-AGRLSDAESMMALKDFLNRMGSN-N-VWCEGTGAQS------NADLRSGYIMN--TS 208 (523)
Q Consensus 144 ~~ia~~L~~~~~----~~i~~~-~g~~~~~e~~~~~~~l~~~lG~~-~-~~~~~~~~~~------~~~~~~~~~~~--~~ 208 (523)
++||++|+++++ ++|... .+...+........+|++.+|+. + +......|.. ...+|....++ .+
T Consensus 127 d~IA~kl~~i~~~~G~~ai~~g~~~~~~~g~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~ 206 (825)
T PRK15102 127 DLFYEELERVQKTYGPSALHTGQTGWQSTGQFHSATGHMQRAIGMHGNSVGTVGDYSTGAGQVILPYVLGSTEVYEQGTS 206 (825)
T ss_pred HHHHHHHHHHHHhhCcHhhcccccccccCCccCchHHHHHHHHhhcCCCcCCCCCcCHHHHhhhhheEecchhhccCCCC
Confidence 999999998864 455221 11011000111223455556641 2 2222222211 12233221111 23
Q ss_pred c-cccccCCEEEEEcCCCCcch---------hhHH--HHHHHHHHhCCCeEEEEcCCCCCCcchh--c-----cCCCHHH
Q 009859 209 I-SGLEKADCFLLVGTQPRVEA---------AMVN--ARIRKTVRANNAKVGYIGPATDLNYDHQ--H-----LGTGPKT 269 (523)
Q Consensus 209 ~-~di~~ad~il~~G~n~~~~~---------p~~~--~~lr~a~~~~g~klv~idp~~~~t~~~a--~-----~g~~~~~ 269 (523)
. .|+++||+||+||+||.+++ |... .+++++.+++|+||||||||++.|+..+ + ||+|.+.
T Consensus 207 ~~~~~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 207 WPLILENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred cHHHHHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 3 35799999999999998763 3321 2344544334799999999999998852 1 5776532
Q ss_pred ----------------------------------------------HHHHHcC-----cHHHHHHHhcCCCcEEEEcCCc
Q 009859 270 ----------------------------------------------LLEIAEG-----RHPFFSAISNAKNPVIIVGAGL 298 (523)
Q Consensus 270 ----------------------------------------------l~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~ 298 (523)
++++ +| |+++|++|++ +++.|++|++.
T Consensus 287 ~lam~~~ii~e~l~D~~Fv~~~t~Gfd~~~~~l~g~~dg~~~tpe~aa~i-tGV~ae~I~~lA~~~a~-~~~~i~~g~g~ 364 (825)
T PRK15102 287 MLALAHTLYSENLYDKKFIDNYCLGFEQFLPYLLGEKDGVPKTPEWAEKI-CGIDAETIRELARQMAK-GRTQIIAGWCI 364 (825)
T ss_pred HHHHHHHHHHCCcccHHHHHHHccCHHHHHHHhcccccCCcCCHHHHHHH-HCcCHHHHHHHHHHHHh-cCCEEEEeech
Confidence 1222 24 6899999998 46778889999
Q ss_pred ccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHh-----hHHhcCC------------------------CCCc
Q 009859 299 FERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQA-----AALDLGL------------------------VPES 349 (523)
Q Consensus 299 ~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~-----g~~~~g~------------------------~p~~ 349 (523)
+++.+|.+..+++.+|+++||++|++|+|++.... .+.. +....+. .|..
T Consensus 365 ~~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 443 (825)
T PRK15102 365 QRQQHGEQPYWMGAVLAAMLGQIGLPGGGISYGHH-YSGIGVPSSGGAIPGGFPGNLDTGQKPKHDNSDYKGYSSTIPVA 443 (825)
T ss_pred hhhhhhHHHHHHHHHHHHHhccCCCCCCccccccc-cCCCCCCCcccccccCccccCCcccCccccccccccccccccHH
Confidence 98999999999999999999999999988653210 0000 0000000 0100
Q ss_pred -------cc-----------cccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCC
Q 009859 350 -------SN-----------SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 403 (523)
Q Consensus 350 -------~~-----------~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E 403 (523)
.. ..++||++|++++||+. .++|++++|+|++|+|+|+|+++||||||+++|+|
T Consensus 444 ~~~~~i~~~g~~~~~~g~~~~~~~ik~l~v~g~Np~~s~p~~~~~~~al~~ldf~Vv~D~~~teTa~~ADiVLPaa~~~E 523 (825)
T PRK15102 444 RFIDAILEPGKTINWNGKKVTLPPLKMMIFSGTNPWHRHQDRNRMKEAFRKLETVVAIDNQWTATCRFADIVLPACTQFE 523 (825)
T ss_pred HHHHHHhcCCceeccCCCcccCCCeEEEEECCCCHHHcCcCHHHHHHHhcCCCEEEEecCccCchHhhCCEEeecCcccc
Confidence 00 01369999999999974 24688999999999999999999999999999999
Q ss_pred CCcee--ec-CCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 009859 404 KEGTY--EN-TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 448 (523)
Q Consensus 404 ~~gt~--~n-~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~ 448 (523)
+++.. .+ ...++|..+|+|+|+||+|+||+|+++||++||.+..|
T Consensus 524 ~~d~~~~g~~~~~~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~ 571 (825)
T PRK15102 524 RNDIDQYGSYSNRGIIAMKKVVEPLFESRSDFDIFRELCRRFGREKEY 571 (825)
T ss_pred cCcccccccccccceeeeeeccCCcccccCHHHHHHHHHHHhCCcccc
Confidence 99532 11 13589999999999999999999999999999987433
No 53
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=100.00 E-value=7.1e-49 Score=432.58 Aligned_cols=376 Identities=13% Similarity=0.127 Sum_probs=288.5
Q ss_pred eeeeeee-ccCCCCCcEEEEEECCEEEEEecC-------CCCCCCccccccccccccCCCC-CCCCCCcEEeC-------
Q 009859 66 KGTETID-VTDAVGSNIRIDSRGPEVMRILPR-------LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG------- 129 (523)
Q Consensus 66 ~~~~siC-~~C~~gC~i~v~vr~g~v~rv~~~-------~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~------- 129 (523)
+.+.|+| ++|..+|++.|+|+||+|++++++ +++|.+++.+|.||++..+++| |+||++||+|+
T Consensus 43 kvv~stc~~nC~~~Cs~~v~VkDG~V~~~~~~~dyP~~~~d~P~~~~R~C~KG~s~~~~vYsPdRLkyPmkR~~~l~~~~ 122 (1235)
T TIGR01580 43 KIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYIYSANRLKYPMMRKRLMKLWR 122 (1235)
T ss_pred eEEEeecCCCCCCCCceEEEEECCEEEEEEccCCCCCCCCCCCcCCCccChhhhhhHhhhCCcccccCCeeccchhhhhh
Confidence 4677777 679999999999999999999976 3457789999999999999887 99999999995
Q ss_pred ------------------------------CCCCeeEcCHHHHHHHHHHHHHhcCC----CCEEEEeCC-CCcHHHHHHH
Q 009859 130 ------------------------------ADGRFKAVNWRDALAVVAEVMLQAKP----EEIVGIAGR-LSDAESMMAL 174 (523)
Q Consensus 130 ------------------------------g~g~~~~isWdeAl~~ia~~L~~~~~----~~i~~~~g~-~~~~e~~~~~ 174 (523)
|+|+|++||||||+++||++|+.+++ ++|+++.+. ..+.......
T Consensus 123 ~a~~~~~dpv~aw~~i~~~~~k~~~y~g~RG~G~fvRISWDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~ 202 (1235)
T TIGR01580 123 EAKQTHSDPVEAWASIVENADKAKSYKQARGRGGFVRSSWQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASG 202 (1235)
T ss_pred hhhhccCChhhhhhhhcccccccccccccCCCCCEEEecHHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHH
Confidence 35789999999999999999987653 788776553 3333344456
Q ss_pred HHHHHHcCCCccccCCCccchh----hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEE
Q 009859 175 KDFLNRMGSNNVWCEGTGAQSN----ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYI 250 (523)
Q Consensus 175 ~~l~~~lG~~~~~~~~~~~~~~----~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~i 250 (523)
.+|++.+|+.++++....|... ..+|.. .......|+.+|++||+||+|+..+......++.++. ++|+|||+|
T Consensus 203 ~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~-t~~~e~~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr-~rGaKvVVV 280 (1235)
T TIGR01580 203 SRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ-TDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR-YKGTKTVAI 280 (1235)
T ss_pred HHHHHhcCCccccCCCCcchhhHHhHhheecC-CCCCCchhhhcCCEEEEECCChhhhcchhHHHHHHHH-HcCCeEEEE
Confidence 7999999999987766666433 233321 1123457999999999999999888544567777765 589999999
Q ss_pred cCCCCCCcchhc------cCCCHH--------------------------------------------------------
Q 009859 251 GPATDLNYDHQH------LGTGPK-------------------------------------------------------- 268 (523)
Q Consensus 251 dp~~~~t~~~a~------~g~~~~-------------------------------------------------------- 268 (523)
||+++.+++.++ ||+|.+
T Consensus 281 DPr~t~tA~~AD~WLpIrPGTD~ALaLAm~hvII~E~l~D~~~~~f~~yvk~yTdaPfLV~ld~~~g~~~~grfLrasDl 360 (1235)
T TIGR01580 281 TPDYAEIAKLCDLWLAPKQGTDAALALAMGHVILREFHLDNPSQYFTEYAKRYTDMPMLVMLEERDGYYAAGRFLRAADL 360 (1235)
T ss_pred cCCCChhhHhhCEEeCCCCChHHHHHHHHHHHHHHCCCcccccHHHHHHHHHhcCCceEEEeccCCCcccCCccccHHHc
Confidence 999988765422 111100
Q ss_pred --------------------------------------------------------------------------------
Q 009859 269 -------------------------------------------------------------------------------- 268 (523)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (523)
T Consensus 361 ~~~~~~~~~~~~k~~v~D~~~~~~~p~Gs~g~rw~~~g~Wnl~~~~~~~g~~i~p~ls~~~~~d~~~~v~~P~f~g~~~~ 440 (1235)
T TIGR01580 361 VDALGQENNPEWKTVAFDTNGEMVAPQGSIGFRWGEKGKWNLEQRDGKTGEEIELQLSLLGSQDEIAEVGFPYFGGDGTE 440 (1235)
T ss_pred ccccCccCCCcceEEEEeCCCCCcCCCCCcccccCcCCccccccccCcCCCccCccccccccCCcceeecccccCCcccc
Confidence
Q ss_pred -----------------------------------HHHH-------------------H----------HcC-----cHH
Q 009859 269 -----------------------------------TLLE-------------------I----------AEG-----RHP 279 (523)
Q Consensus 269 -----------------------------------~l~~-------------------~----------~~g-----i~~ 279 (523)
.+.+ . .+| |++
T Consensus 441 ~~~~~~g~~~~~r~vp~~~v~l~dG~~v~V~TVfdll~a~~gv~r~l~g~~~~~~y~d~~~YTPe~aeeiTGV~ae~I~~ 520 (1235)
T TIGR01580 441 HFNKVEGENVLLRKLPVKRLQLADGSTALVTTVFDLTLANYGLERGLGDVNCATSYDDVKAYTPAWQEQITGVSREQIIR 520 (1235)
T ss_pred cccccCCCceeecccceEEEEcCCCCEEEEEeHHHHHHHHhCcCcCCCCccccccccccCCCCHHHHHHHHCcCHHHHHH
Confidence 0000 0 012 578
Q ss_pred HHHHHhc-----CCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHh---h------------
Q 009859 280 FFSAISN-----AKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQA---A------------ 339 (523)
Q Consensus 280 ~a~~l~~-----a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~---g------------ 339 (523)
+|++|+. .++++|++|.|++++.++....+++.+|..+||++|++|+|.+.+.++.|.. |
T Consensus 521 lAreyA~na~~t~g~s~I~~G~Ginh~~hgd~~~Rai~~L~~LTGniG~~GgG~~~y~GQ~klrp~~gw~~lafa~dw~r 600 (1235)
T TIGR01580 521 IAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLILCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQR 600 (1235)
T ss_pred HHHHHHhcccccCCceEEEeCcccchhhhchHHHHHHHHHHHHhccCCCCCCCCccccCccCcccCCccccccccccccc
Confidence 9999997 5899999999999999999999999999999999999998877654321110 0
Q ss_pred ------------------------------------------------HHhcCCCCCcc---------------------
Q 009859 340 ------------------------------------------------ALDLGLVPESS--------------------- 350 (523)
Q Consensus 340 ------------------------------------------------~~~~g~~p~~~--------------------- 350 (523)
+..+|++|...
T Consensus 601 ppR~~~~ts~~Y~htdQwRye~~~~~~~~sp~~~~~~~~~~~~D~~~~a~r~GWlP~~Pqf~~n~l~l~~eA~~ag~~~~ 680 (1235)
T TIGR01580 601 PPRHMNGTSFFYNHSSQWRYETVTAEDLLSPMADKSRYTGHLIDYNVRAERMGWLPSAPQLNTNPLTIAGEAEKAGMNPV 680 (1235)
T ss_pred CcccccccchhhhcCCceeecCcchhhhcCCCccccccccChhHHHHHHHhcCCCCCCcccCCCHHHHHHHHHHcCCChH
Confidence 01123333220
Q ss_pred --------------c-c-----ccCccEEEEEcCCCCCCC----------------------------------------
Q 009859 351 --------------N-S-----IESAKFVYLMGADDVDLE---------------------------------------- 370 (523)
Q Consensus 351 --------------~-~-----~~~i~~l~~~g~n~~~~~---------------------------------------- 370 (523)
+ + ..-.+.++++.+|++...
T Consensus 681 ~~v~~~l~~g~l~fa~edpd~p~n~Pr~~fvWR~NllgsS~KG~eyflkhllgt~~~~~~~~~~~~~~~~p~ev~w~~~a 760 (1235)
T TIGR01580 681 DYVVKSLQEGSLRFAAEQPDNGVNFPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIMNKDLGQQGGVKPEEVDWQDNG 760 (1235)
T ss_pred HHHHHHHhcCcccccccCCCCCcCCceEEEEEccccccCCccchHHHHHhhccCCcccccccccccccCCceeEEeeccc
Confidence 0 0 012578999988876310
Q ss_pred CCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecC-CCceEeecCccCCCCCCccHHHHHHHHHHHhC
Q 009859 371 KLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENT-EGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 443 (523)
Q Consensus 371 ~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~-eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg 443 (523)
...|++|+|++|++||+|+.+||||||+++|+||.|+++|. ++++|.++|+|+|+||+|+||+|++.||++|+
T Consensus 761 ~~~kldl~v~~D~~mt~ta~~advvLPaAt~~Ek~d~~t~~~h~~i~~~~~av~P~geak~Dw~I~~~LA~~~s 834 (1235)
T TIGR01580 761 LEGKLDLVVTLDFRMSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAIDPAWESKSDWEIYKAIAKAFS 834 (1235)
T ss_pred cccCccEEEEeeeeeccchhhCcEEEecCccccccCccccCCCCceeecccccCCcccccCHHHHHHHHHHHHH
Confidence 12568999999999999999999999999999999999985 88999999999999999999999999999884
No 54
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=100.00 E-value=6.1e-50 Score=421.38 Aligned_cols=321 Identities=26% Similarity=0.370 Sum_probs=249.4
Q ss_pred CCCCcEEe---CCCCCeeEcCHHHHHHHHHHHHHhcCC----CCEEE-EeCCCCcHHHHHHHHHHHHHcCCCccccCCCc
Q 009859 121 RLNDPMIR---GADGRFKAVNWRDALAVVAEVMLQAKP----EEIVG-IAGRLSDAESMMALKDFLNRMGSNNVWCEGTG 192 (523)
Q Consensus 121 Rl~~Pl~R---~g~g~~~~isWdeAl~~ia~~L~~~~~----~~i~~-~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~ 192 (523)
||++||+| +|+|+|++|||||||++||++|+++++ ++|++ ..++..+.|+.+++++|++.+|++++......
T Consensus 1 Rl~~Pl~R~g~rg~~~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (432)
T PF00384_consen 1 RLKYPLKRVGERGDGKFVRISWDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQ 80 (432)
T ss_dssp B--S-EEEHCSTTSSSEEE--HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEG
T ss_pred CCCcceEccccCCCCCEEEccHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999 678999999999999999999998543 67874 55667779999999999999999876665554
Q ss_pred cchh-----hhhh----cCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc-
Q 009859 193 AQSN-----ADLR----SGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH- 262 (523)
Q Consensus 193 ~~~~-----~~~~----~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~- 262 (523)
|... ..++ ....++.++.|+++||+||+||+||.+++|....+++++++++|+|+|+|||+++.++..++
T Consensus 81 ~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~ 160 (432)
T PF00384_consen 81 CDTCMASAAEAFGGDFVGGPAFGNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADE 160 (432)
T ss_dssp GGCTTHHHHHHHSSHSHTSSSCCSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSE
T ss_pred cccccchhhhheecccccCcccccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccc
Confidence 4321 1222 22344456789999999999999999999999888888777799999999999999888775
Q ss_pred -----cCCCHHHHHHHH---------------------------------------cC-----cHHHHHHHhcCCC-cEE
Q 009859 263 -----LGTGPKTLLEIA---------------------------------------EG-----RHPFFSAISNAKN-PVI 292 (523)
Q Consensus 263 -----~g~~~~~l~~~~---------------------------------------~g-----i~~~a~~l~~a~~-~~i 292 (523)
||+|.+.+..++ +| ++++|+.+.++++ +++
T Consensus 161 ~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~A~~~~~~~~~~~~ 240 (432)
T PF00384_consen 161 WIPIRPGTDAALALAMAHVIIDEGLYDKEFIEKYTYGFDYTNAPLLVYTDEDAAEICGVPAEKIRELAREYAKAAPKAAI 240 (432)
T ss_dssp EEEE-TTTHHHHHHHHHHHHHHTTTSTHHHHHHHEECHHHHHHHHTTTTTHHHHHHHTSHHHHHHHHHHHHHHSTS-EEE
T ss_pred cccccccccHHhhcccccceeeccccccchhhhhhhhhhhhhhhhhcccccccceEEEechhhcccccccccccccccch
Confidence 688765421110 12 6789999998876 899
Q ss_pred EEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhh-HHhcCC--------------------------
Q 009859 293 IVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA-ALDLGL-------------------------- 345 (523)
Q Consensus 293 i~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g-~~~~g~-------------------------- 345 (523)
++|.+..++.++.+..+++..|+.++|+++++|+|+..+.+..+..+ ....+.
T Consensus 241 ~~g~g~~~~~~g~~~~~a~~~L~~l~G~i~~~Ggg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (432)
T PF00384_consen 241 IWGWGITRHSNGEQTARAIANLAALTGNIGKPGGGIFPLGGPPNVPGYANPVGPLPVDPPADGFPYGKPKFWKEGPGNLK 320 (432)
T ss_dssp EESHHHHSSTTHHHHHHHHHHHHHHHTTTTSTTBEEEEESSSTTHTTTHHHTTSSTTEECTTEETCHHHHHHCGHTTHSC
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcceeecccccccccccccccccccccccccccccccchhhhhhhhhccCccccc
Confidence 99999999999999999999999999999999998887664222222 111111
Q ss_pred -CCCcc-------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceee
Q 009859 346 -VPESS-------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYE 409 (523)
Q Consensus 346 -~p~~~-------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~ 409 (523)
.|... ..+++++++|+++.||+. .+++.+++|+|++|.++|+|+++||||||+++++|++|++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~~~~~~al~k~~~~V~~d~~~teta~~ADiiLP~~~~~E~~~~~~ 400 (432)
T PF00384_consen 321 FPPGNDFVEAINAIEDGKIKALFVLGGNPAQSFPDSNKVIEALKKLDFVVVIDPFMTETAKYADIILPAATWLEREDTVV 400 (432)
T ss_dssp SSSTTEHHHHHHHHHTTSSSEEEEESCSHHHHSSSHHHHHHHHTTTSEEEEEESSCTHHHHTSSEEEEBE-GGGSEEEEE
T ss_pred hhhhhhhhhhhhhccccceeeeeccccceeeecccchhhhhhcccccceecccccchhhcchhheecccCCccccCCccc
Confidence 11111 145789999999999963 24578999999999999999999999999999999999999
Q ss_pred cCCCceEeecCccCCCCCCccHHHHHHHHHHH
Q 009859 410 NTEGCTQQTLPAVPTVGDARDDWKIIRALSEV 441 (523)
Q Consensus 410 n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~ 441 (523)
|.+|++|..+|+|+|+||+|+||+|+.+||++
T Consensus 401 ~~~~~~~~~~~~v~p~ge~~~d~~I~~~la~r 432 (432)
T PF00384_consen 401 NAEGRVQRRNPVVEPPGEARSDWEIFRELAKR 432 (432)
T ss_dssp ETTSEEEEEEESSC-STT-BEHHHHHHHHHHH
T ss_pred CCcCchhhcccccCCCccCChHHHHHHHHhcC
Confidence 99999999999999999999999999999986
No 55
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=100.00 E-value=2.6e-39 Score=307.74 Aligned_cols=353 Identities=16% Similarity=0.214 Sum_probs=282.4
Q ss_pred eeeeeeccCCCCC-cEEEEEECCEEEEEecCCCCCCCccccccccccccCCC-CCCCCCCcEEeCCCCCeeEcCHHHHHH
Q 009859 67 GTETIDVTDAVGS-NIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGL-KSQRLNDPMIRGADGRFKAVNWRDALA 144 (523)
Q Consensus 67 ~~~siC~~C~~gC-~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~-~~~Rl~~Pl~R~g~g~~~~isWdeAl~ 144 (523)
...-+|+.|+.-| .|+|.+.+|+| ++.. .|..|..-+... .++|++.||++. +|+|+++|||||++
T Consensus 3 ~k~~vCp~CG~lCDDI~v~~e~~~i-~~~n----------aCr~G~akF~~~~~~~R~~~p~ik~-~g~~k~v~~deAie 70 (429)
T COG1029 3 IKNVVCPFCGTLCDDIEVEVEDGKI-EVRN----------ACRIGNAKFKEAFSDHRIKAPMIKD-DGELKPVDYDEAIE 70 (429)
T ss_pred eeeEEcCcccccccceEEEecCCee-eehh----------HHhhhHHHHhhhcccccccCceEec-CCceeeccHHHHHH
Confidence 4567999999999 69999999999 6654 699999888877 589999999999 99999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhh--cCcccCCCccccc-cCCEEEEE
Q 009859 145 VVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLR--SGYIMNTSISGLE-KADCFLLV 221 (523)
Q Consensus 145 ~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~di~-~ad~il~~ 221 (523)
.+|+.|.+.+ +...+++..+++|...+.-.+.+.+|+ .+|...+.|..+..++ .....+.++.+++ ++|+|+.|
T Consensus 71 ~Aa~ILv~aK--rPllyg~s~tscEA~~~gielaE~~ga-viD~~asvchGp~~~alqe~g~p~~TlgevKNraDviVyW 147 (429)
T COG1029 71 KAAEILVNAK--RPLLYGWSSTSCEAQELGIELAEKLGA-VIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIVYW 147 (429)
T ss_pred HHHHHHHhcc--CceEeccccchHHHHHHHHHHHHHhCc-EecCCCccccchHHHHHHhcCCcccchhhhcccccEEEEe
Confidence 9999999975 566677788889998888899999997 6777777775544333 2334567889996 69999999
Q ss_pred cCCCCcchhhHHHHHHH----HHH---hCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHH---c----------
Q 009859 222 GTQPRVEAAMVNARIRK----TVR---ANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA---E---------- 275 (523)
Q Consensus 222 G~n~~~~~p~~~~~lr~----a~~---~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~---~---------- 275 (523)
|+||.+++|.+..|..- ..+ +.+-++|+||||.|.|+..++ ++.|.+.+..+. .
T Consensus 148 GtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDyelisAl~~~l~G~~~~~~eev 227 (429)
T COG1029 148 GTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYELISALRAALHGKEPHRSEEV 227 (429)
T ss_pred CCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcHHHHHHHHHHhcCCCCCCchhh
Confidence 99999999998877321 111 245799999999999998875 688887765543 2
Q ss_pred -C-----cHHHHHHHhcCCCcEEEEcCCccc----ccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhH-----
Q 009859 276 -G-----RHPFFSAISNAKNPVIIVGAGLFE----RKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA----- 340 (523)
Q Consensus 276 -g-----i~~~a~~l~~a~~~~ii~g~~~~~----~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~----- 340 (523)
| +.++|.++++|+-.+|++|.|+.+ |.|......++..|+..+.. -+.+++++.|..|.
T Consensus 228 ~gvp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~------tli~mrgH~Nv~GFnqv~~ 301 (429)
T COG1029 228 AGVPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKF------TLIPMRGHYNVTGFNEVLS 301 (429)
T ss_pred cCCCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceE------EEEEeccccccccccchhh
Confidence 3 578999999999999999998865 57777777777777776543 34556666665553
Q ss_pred HhcCC-------------CCCccc-----cccCccEEEEEcCCCCC------CCCCCCCceEEEEcccCCcccCcceEEe
Q 009859 341 LDLGL-------------VPESSN-----SIESAKFVYLMGADDVD------LEKLPNDAFVVYQGHHGDHGVYRANVIL 396 (523)
Q Consensus 341 ~~~g~-------------~p~~~~-----~~~~i~~l~~~g~n~~~------~~~l~~~~fvV~~d~~~t~ta~~ADvvL 396 (523)
+..|+ .|+... ...++++.+++++||.. .+.|.+.+ +|++|+++++|+..||||+
T Consensus 302 ~e~GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIP-vI~iDp~~~pTt~vadVvi 380 (429)
T COG1029 302 WETGYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIP-VICIDPHPTPTTEVADVVI 380 (429)
T ss_pred hhhCCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCC-EEEecCCCCcchhhcceec
Confidence 33332 122111 45789999999999974 13466776 7899999999999999999
Q ss_pred cCCC-CCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhC
Q 009859 397 PASA-FSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 443 (523)
Q Consensus 397 P~a~-~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg 443 (523)
|++- ..|.+||++.++|-..+++|++++ ..++|-+||+.|-+++.
T Consensus 381 P~aI~gmE~~GTayRmD~V~v~~k~~~es--~~~sde~iLk~l~ekv~ 426 (429)
T COG1029 381 PSAIDGMEAEGTAYRMDGVPVRMKPVVES--KTLSDEEILKKLLEKVK 426 (429)
T ss_pred ccceeeeeccceEEeecCceEeeEecccc--cccChHHHHHHHHHHHh
Confidence 9996 679999999999999999999998 57899999999988763
No 56
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=99.96 E-value=2.5e-28 Score=254.50 Aligned_cols=190 Identities=14% Similarity=0.077 Sum_probs=141.4
Q ss_pred eeeeeee-ccCCCCCcEEEEEECCEEEEEe-----c--CCCCCCCccccccccccccCCCC-CCCCCCcEEeC-------
Q 009859 66 KGTETID-VTDAVGSNIRIDSRGPEVMRIL-----P--RLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG------- 129 (523)
Q Consensus 66 ~~~~siC-~~C~~gC~i~v~vr~g~v~rv~-----~--~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~------- 129 (523)
|.+.|+- .+|...|.-.|+|+||-|.--. | +++-|--+-+-|+||.+.-=++| |.|++||++|.
T Consensus 45 KvVRSTHGVNCTGSCSWkIYVKdGiITWEtQqtDYP~tgPD~PnyEPRGCPRGASfSWY~YSp~RvkyPyiRg~L~emwR 124 (1227)
T COG5013 45 KVVRSTHGVNCTGSCSWKIYVKNGLITWETQQTDYPRTGPDLPNYEPRGCPRGASFSWYLYSPNRVKYPYIRGRLIEMWR 124 (1227)
T ss_pred ceeeccCCccccceeeEEEEEeCCEEEEeeccccCCCCCCCCCCCCCCCCCCCCceeeEEeccccccchhHHHHHHHHHH
Confidence 4566666 7899999999999999987643 2 22334456788999975433455 99999999993
Q ss_pred ------------------------------CCCCeeEcCHHHHHHHHHHHH----HhcCCCCEEEEeC-CCCcHHHHHHH
Q 009859 130 ------------------------------ADGRFKAVNWRDALAVVAEVM----LQAKPEEIVGIAG-RLSDAESMMAL 174 (523)
Q Consensus 130 ------------------------------g~g~~~~isWdeAl~~ia~~L----~~~~~~~i~~~~g-~~~~~e~~~~~ 174 (523)
|.|.|.++||+||.+.||..+ |...+++|++++. +-.+.-++.+-
T Consensus 125 EAk~~~gDPV~AWa~IvedP~krk~Yk~aRGkGG~VR~~W~E~~EiIAAA~vyTIk~YGPDRv~GFSPIPAMSmVSyAAG 204 (1227)
T COG5013 125 EAKARHGDPVEAWASIVEDPDKRKSYKQARGKGGFVRSSWDEVNELIAAANVYTIKTYGPDRVAGFSPIPAMSMVSYAAG 204 (1227)
T ss_pred HHHHhhCCHHHHHHHHHhCHHHHHHHHHhccCCceEEecHHHHHHHHHHhhhhhhhhcCCccccCcCCcchhhhhhhhcc
Confidence 468899999999999999864 4555689887765 45556667778
Q ss_pred HHHHHHcCCCccccCCCcc----chhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEE
Q 009859 175 KDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYI 250 (523)
Q Consensus 175 ~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~i 250 (523)
.||++.+|..-.++..-.| +.+..||.+.-. ..-.|+-|+-+|+.||+|.-.+..-.++.+.+++ .+|+|+|+|
T Consensus 205 aRfl~LIGGvmlSFYDWYaDLPpASPQvwGeQTDV-PESaDWynssyii~wGsNvP~TRTPDahf~te~R-YkGtK~v~v 282 (1227)
T COG5013 205 ARFLSLIGGVMLSFYDWYADLPPASPQTWGEQTDV-PESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR-YKGTKTVVV 282 (1227)
T ss_pred chHHHHhcchhcchhhhhcCCCCCCcccccccCCC-CcccccccceeeeeeccCCCccCCCchhhHHHhh-hcCcceEEE
Confidence 8999999987666554443 334556654211 2347899999999999999888766667777764 599999999
Q ss_pred cCCCCCC
Q 009859 251 GPATDLN 257 (523)
Q Consensus 251 dp~~~~t 257 (523)
.|++...
T Consensus 283 spDyae~ 289 (1227)
T COG5013 283 SPDYAEV 289 (1227)
T ss_pred CCchHHh
Confidence 9987543
No 57
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=99.52 E-value=1.7e-14 Score=105.32 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=45.0
Q ss_pred ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC
Q 009859 65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK 118 (523)
Q Consensus 65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~ 118 (523)
+++++|+|++|+.||+|.+++++|+|++|++++++|+|.+++|.||+++++.+|
T Consensus 1 mk~~~t~C~~C~~gC~i~~~v~~g~i~~v~g~~~~p~~~g~lC~KG~~~~~~v~ 54 (55)
T PF04879_consen 1 MKTVPTVCPYCSSGCGIDVYVKDGKIVKVEGDPDHPINQGRLCPKGRFGYQFVY 54 (55)
T ss_dssp SEEEEEE-SSCTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHCGGGCCC
T ss_pred CeEEeeECcCCcCCCcEEEEEecCceEEEECCCCCCCCCccCCHhHhHHHHhhc
Confidence 578999999999999999999999999999999999999999999999999875
No 58
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.44 E-value=3e-14 Score=135.81 Aligned_cols=58 Identities=38% Similarity=0.580 Sum_probs=51.2
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCccc--ccccccccccCcccccccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSEL--SGNVIDICPVGALTSKPFAFK 59 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~--~Gn~idvCPvGAlt~k~~~~~ 59 (523)
||||+|+||+|..+|++.+||.+++|+++.++++ +++ +|||+||||||||++|+.-..
T Consensus 219 RCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~-~~~~~~g~cvdvCPvGAL~~~d~~~~ 278 (297)
T PTZ00305 219 RCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELE-VKTDNNMPVSQLCPVGKLYLGDADEN 278 (297)
T ss_pred HHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcc-cccCCCCceeeECCCcccccCCcccc
Confidence 8999999999999999999999999999999764 444 456999999999999985443
No 59
>PF09326 DUF1982: Domain of unknown function (DUF1982); InterPro: IPR015405 This C-terminal domain is functionally uncharacterised and is found in various prokaryotic NADH dehydrogenases including NADH-quinone oxidoreductase, chain G. ; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process
Probab=98.66 E-value=1e-08 Score=71.70 Aligned_cols=31 Identities=52% Similarity=0.939 Sum_probs=27.8
Q ss_pred cccCCCCcccccccccCCchhhhccHHHHHH
Q 009859 486 SEMDLTPFGSAVENFYMTDSITRASKTMAQC 516 (523)
Q Consensus 486 ~~~~~~~~~~~~~~~y~~d~~~r~s~~~~~~ 516 (523)
..+.+.+|...+.|||+||+|+|+|++|++|
T Consensus 19 ~~~~~~~~~~~i~dfY~Td~IsRAS~tMAeC 49 (49)
T PF09326_consen 19 GKLSDAPFQSPIKDFYMTDPISRASPTMAEC 49 (49)
T ss_pred CccccCccccccccccccchhhhhhHHhhcC
Confidence 3556678999999999999999999999999
No 60
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.14 E-value=6.1e-07 Score=86.15 Aligned_cols=56 Identities=29% Similarity=0.525 Sum_probs=49.3
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCC----cCcccccccccccccCccccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKL----MTSELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~----~~~~~~Gn~idvCPvGAlt~k~~ 56 (523)
|||++|.++.|...+...+||.+..|.+..+++ ..|..||+|+++||+|||+.+..
T Consensus 153 ~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 153 RCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred HHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 799999999999999999999999988766543 35788999999999999999975
No 61
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.35 E-value=4.6e-05 Score=70.54 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=39.1
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCccccccccccccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWE 64 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~We 64 (523)
||||.|. ..++...++|.++.+ .-.|..||.|+++||+|||+.+++.++.+.|+
T Consensus 121 ~Cv~aCp----~~ai~~~~~~~~~v~------~~~C~~Cg~Cv~vCP~~AI~~~~~~~~~~~w~ 174 (191)
T PRK05113 121 KCIQACP----VDAIVGATKAMHTVI------SDLCTGCDLCVAPCPTDCIEMIPVAETPDNWK 174 (191)
T ss_pred hhhhhCC----HhhhecccCCceeec------CCcCCchHHHHHHcCcCceEEeeccccccCCc
Confidence 6899996 223444455544332 23588999999999999999999998877665
No 62
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.84 E-value=0.00025 Score=36.61 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=13.1
Q ss_pred cccccccccccccCc
Q 009859 36 SELSGNVIDICPVGA 50 (523)
Q Consensus 36 ~~~~Gn~idvCPvGA 50 (523)
+.+||.|+++||+||
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 357899999999998
No 63
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.49 E-value=0.017 Score=56.97 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=72.5
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCcc-ccccC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS-NSIES 355 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~-~~~~~ 355 (523)
+++.|+.|.+||+|+++-+....- +...+...|+..+|.+=..-..+ -......|..+.|...... ..+.+
T Consensus 69 ie~Aa~ILv~aKrPllyg~s~tsc-----EA~~~gielaE~~gaviD~~asv---chGp~~~alqe~g~p~~TlgevKNr 140 (429)
T COG1029 69 IEKAAEILVNAKRPLLYGWSSTSC-----EAQELGIELAEKLGAVIDSNASV---CHGPSVLALQEAGKPTATLGEVKNR 140 (429)
T ss_pred HHHHHHHHHhccCceEeccccchH-----HHHHHHHHHHHHhCcEecCCCcc---ccchHHHHHHhcCCcccchhhhccc
Confidence 467899999999999977655432 45556667888776532111111 1123344555544432211 14567
Q ss_pred ccEEEEEcCCCCC--CCCC---------------CCCceEEEEcccCCcccCcceEEec
Q 009859 356 AKFVYLMGADDVD--LEKL---------------PNDAFVVYQGHHGDHGVYRANVILP 397 (523)
Q Consensus 356 i~~l~~~g~n~~~--~~~l---------------~~~~fvV~~d~~~t~ta~~ADvvLP 397 (523)
-++++.+|+||+. +..| ++...+|++|+..|+||+.||+.+-
T Consensus 141 aDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~q 199 (429)
T COG1029 141 ADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQ 199 (429)
T ss_pred ccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEe
Confidence 7899999999975 1111 2456799999999999999998653
No 64
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=96.14 E-value=0.0017 Score=67.04 Aligned_cols=55 Identities=38% Similarity=0.601 Sum_probs=43.1
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCc---CcccccccccccccCcccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLM---TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~---~~~~~Gn~idvCPvGAlt~k~ 55 (523)
||||+|...+....++...++....+.......+ .|..||.|+++||++|++.+.
T Consensus 14 ~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~~ 71 (374)
T TIGR02512 14 RCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEKD 71 (374)
T ss_pred HhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhhc
Confidence 6999999988887777777877766654433333 478899999999999998773
No 65
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=95.94 E-value=0.0022 Score=57.91 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.5
Q ss_pred CcCcccccccccccccCcccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
...|-|||.|+|+||||||...+
T Consensus 94 ~grCIfCg~C~e~CPt~Al~~t~ 116 (172)
T COG1143 94 LGRCIFCGLCVEVCPTGALVLTP 116 (172)
T ss_pred cccccccCchhhhCchhhhcCCc
Confidence 44699999999999999998877
No 66
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=95.86 E-value=0.011 Score=47.33 Aligned_cols=54 Identities=13% Similarity=0.306 Sum_probs=42.6
Q ss_pred eeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccc-cccCCC-CCCCCCCcEEeCCCCC
Q 009859 68 TETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTR-FCYDGL-KSQRLNDPMIRGADGR 133 (523)
Q Consensus 68 ~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr-~~~~~~-~~~Rl~~Pl~R~g~g~ 133 (523)
.+-+|..|..||.|.|+. .+.+|+++ -|+||. ++.+.+ +|.|+..-.+|.-+|+
T Consensus 3 ~~~iCi~CP~gC~i~Ve~---~~~~v~Gn---------~CPRG~ey~~~Ei~~pkrvvts~VrV~ng~ 58 (117)
T COG3862 3 KEVICIVCPIGCHIKVEL---HIKSVKGN---------RCPRGVEYGKEEITSPKRVVTSTVRVKNGE 58 (117)
T ss_pred eEEEEEEcCCccEEEEEE---EEEEEecC---------cCCchhhhhHhhhcCcceEEEEEEEEcCCc
Confidence 456899999999999987 78888875 599997 455555 5899999999973443
No 67
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.47 E-value=0.0034 Score=36.93 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.1
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.+..||.|+++||++|++
T Consensus 7 ~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 7 KCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp TSSS-THHHHHSTTSSEE
T ss_pred HCCCcchhhhhcccccCC
Confidence 467899999999999985
No 68
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=95.04 E-value=0.0026 Score=45.45 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=6.1
Q ss_pred CcccccccccccccCc
Q 009859 35 TSELSGNVIDICPVGA 50 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGA 50 (523)
.+..||+|+.+||+||
T Consensus 37 ~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 37 KCTGCGACVEVCPTGA 52 (52)
T ss_dssp G----SHHHHHTTTS-
T ss_pred hCcCcChhhhhCcCcC
Confidence 3445555555555554
No 69
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=95.02 E-value=0.0037 Score=45.14 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=19.7
Q ss_pred cceeeeecCCCCceEecCCC--CCcCcccccccccccccCcc
Q 009859 12 VQDLGMLGRGSGEEIGTYVE--KLMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 12 ~~~lg~~~rg~~~~i~~~~~--~~~~~~~~Gn~idvCPvGAl 51 (523)
...+.+...+.......+.. ..-.+..||.|+++||++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 14 VGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred ccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 34444444444443332221 22357788888888888885
No 70
>PLN00071 photosystem I subunit VII; Provisional
Probab=94.63 E-value=0.012 Score=46.34 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=11.9
Q ss_pred cccccccccccccCccccccc
Q 009859 36 SELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~ 56 (523)
+..||.|+++||++||+.+.|
T Consensus 48 C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 48 CVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CcChhhHHhhcCCccceEeee
Confidence 455566666666666655443
No 71
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.55 E-value=0.044 Score=53.72 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=62.8
Q ss_pred ceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCC---CCCcEEEE--EEC
Q 009859 13 QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA---VGSNIRID--SRG 87 (523)
Q Consensus 13 ~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~---~gC~i~v~--vr~ 87 (523)
++||++|... ..+ + .-.|.-||.|+++|||||++-.. -+++.-.+-|..|+ .-|...+. -+.
T Consensus 157 ~DigivGv~~-P~~----~-~E~c~gc~~cv~~C~~gAI~~~~-------~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~ 223 (317)
T COG2221 157 HDIGIVGVWK-PKV----D-EELCRGCGKCVKVCPTGAITWDG-------KKLKIDGSKCIGCGKCIRACPKAAFRGEKV 223 (317)
T ss_pred cceeEEEeec-Ccc----C-HHHhchhHhHHHhCCCCceeecc-------ceEEEehhhccCccHHhhhCChhhcchhhc
Confidence 4888888766 111 1 11234688999999999997554 24666677776554 66873332 223
Q ss_pred CEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhc
Q 009859 88 PEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQA 153 (523)
Q Consensus 88 g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~ 153 (523)
|-.+.|-++- ||. +.|.-.||+-. .+|||+++.|-+.+.-.
T Consensus 224 g~~i~VGGk~------------Gr~------~~r~g~~~~~~-------~~~dei~~ii~~~~e~~ 264 (317)
T COG2221 224 GIAILVGGKT------------GRE------LGRVGKPLVPV-------EDEDEIIDIIKKTIEVW 264 (317)
T ss_pred cEEEEEcccc------------CCc------ccccccccccc-------CCHHHHHHHHHHHHHHH
Confidence 4445554431 333 23555666533 29999999988877644
No 72
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=94.45 E-value=0.016 Score=53.26 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=11.8
Q ss_pred CcccccccccccccCcc
Q 009859 35 TSELSGNVIDICPVGAL 51 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAl 51 (523)
.|..||.|+.+||++++
T Consensus 63 kCi~Cg~C~~aCP~~ai 79 (183)
T TIGR00403 63 KCIACEVCVRVCPINLP 79 (183)
T ss_pred cCcCcCChhhhCCCCcc
Confidence 46667777777777764
No 73
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=94.30 E-value=1.1 Score=40.18 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCcc--------chhhhhhcCc--cc
Q 009859 137 VNWRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA--------QSNADLRSGY--IM 205 (523)
Q Consensus 137 isWdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~--------~~~~~~~~~~--~~ 205 (523)
++-++|.+ .|++. ++..++.|+.. ..+....+.+|++.+|.+.+.+..... .....++... ..
T Consensus 15 ~~p~~aa~----lLk~A--KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~ 88 (162)
T TIGR00315 15 VSPKLVAM----MIKRA--KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLA 88 (162)
T ss_pred cCHHHHHH----HHHcC--CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhcc
Confidence 45555554 44444 35555666433 345566788999999987765543210 0001111111 11
Q ss_pred CCCcccc---ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 206 NTSISGL---EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 206 ~~~~~di---~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
...++-+ .++|+||++|.+...+..+ ...+++. ...|.|.|++.+.+.+....+
T Consensus 89 ~p~~e~~~g~g~~DlvlfvG~~~y~~~~~-ls~lk~f---~~~~~i~l~~~y~pnA~~Sf~ 145 (162)
T TIGR00315 89 DPSWEGFDGEGNYDLVLFLGIIYYYLSQM-LSSLKHF---SHIVTIAIDKYYQPNADYSFP 145 (162)
T ss_pred CchhhhccCCCCcCEEEEeCCcchHHHHH-HHHHHhh---cCcEEEEecCCCCCCCceecc
Confidence 1234555 7999999999997433321 1223332 368999999988776666554
No 74
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=94.27 E-value=0.022 Score=47.01 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=9.7
Q ss_pred cccccccccccccCcccc
Q 009859 36 SELSGNVIDICPVGALTS 53 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~ 53 (523)
|.+||.|+++||+||+..
T Consensus 68 C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 68 CDFCGKCAEACPTNAFHP 85 (101)
T ss_pred CcCccChhhHCCccccCc
Confidence 445555555555555543
No 75
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=94.15 E-value=0.016 Score=45.58 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=15.9
Q ss_pred CcccccccccccccCcccccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPFA 57 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~ 57 (523)
.+..||+|+++||+|||.-+.|.
T Consensus 46 ~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T TIGR03048 46 DCVGCKRCESACPTDFLSVRVYL 68 (80)
T ss_pred cCcChhHHHHhcCcccCEEEEec
Confidence 46677777777777777765543
No 76
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=94.07 E-value=0.023 Score=51.34 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.2
Q ss_pred CcCcccccccccccccCcccc
Q 009859 33 LMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~ 53 (523)
.-.|--||.|+.+||++|+.-
T Consensus 57 ~~~Ci~C~~C~~~CP~~ai~~ 77 (164)
T PRK05888 57 EERCIACKLCAAICPADAITI 77 (164)
T ss_pred CccCCcccChHHHcCcccccc
Confidence 345778889999999888763
No 77
>PRK06991 ferredoxin; Provisional
Probab=93.89 E-value=0.011 Score=57.62 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=29.5
Q ss_pred CcccccccccccccCcccccccccccccccceeeeeeeccCCCCCcE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 81 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i 81 (523)
.|..||.|+++||+||+.-.+-. ..|-.....+-|..|...|..
T Consensus 86 ~CigCg~Cv~aCP~~AI~~~~~~---~~~v~~~~CigCg~Cv~vCP~ 129 (270)
T PRK06991 86 LCIGCTLCMQACPVDAIVGAPKQ---MHTVLADLCTGCDLCVPPCPV 129 (270)
T ss_pred cCCCCcHHHHhCCHhheeccccc---ceeeCHhhCCCchHHHhhCCc
Confidence 57789999999999999755321 122233455667677777764
No 78
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=93.76 E-value=1.7 Score=39.31 Aligned_cols=123 Identities=14% Similarity=0.063 Sum_probs=69.6
Q ss_pred EcCHHHHHHHHHHHHHhcCCCCEEEEeCCC-Cc-HHHHHHHHHHHHHcCCCccccCCCccch--------hhhhhcCc--
Q 009859 136 AVNWRDALAVVAEVMLQAKPEEIVGIAGRL-SD-AESMMALKDFLNRMGSNNVWCEGTGAQS--------NADLRSGY-- 203 (523)
Q Consensus 136 ~isWdeAl~~ia~~L~~~~~~~i~~~~g~~-~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~~--------~~~~~~~~-- 203 (523)
-++=++|. +.|++. ++..++.|+. .. .|....+.+|++.+|.+.+.+......+ ...++.-.
T Consensus 21 ~~~p~~aa----~lI~~A--KrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~ 94 (171)
T PRK00945 21 IVSPKIAA----MMIKKA--KRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNY 94 (171)
T ss_pred ccCHHHHH----HHHHhC--CCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhh
Confidence 34555554 444444 3555565543 33 4566778899999998876554422100 01111111
Q ss_pred ccCCCcccc---ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCHH
Q 009859 204 IMNTSISGL---EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPK 268 (523)
Q Consensus 204 ~~~~~~~di---~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~~ 268 (523)
.....++-+ .++|+||++|.+. |..++-++-.+.-...|.|.|+..+.+.+....+..+.+
T Consensus 95 ~~~p~~e~~~g~~~~DlvlfvG~~~----~~~~~~l~~lk~f~~~~~~~~~~~y~~~a~~s~~~~~~~ 158 (171)
T PRK00945 95 LKDPNWKGLDGNGNYDLVIFIGVTY----YYASQGLSALKHFSPLKTITIDRYYHPNADMSFPNLSKE 158 (171)
T ss_pred ccCchhhhhcCCCCcCEEEEecCCc----hhHHHHHHHHhhcCCceEEEecCCcCCCCceecCCCCHH
Confidence 111234444 6999999999986 444444433322234899999998877766665555543
No 79
>PRK10194 ferredoxin-type protein; Provisional
Probab=93.73 E-value=0.022 Score=51.49 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=28.5
Q ss_pred CcccccccccccccCcccccccccccccccceee---------eeeeccCCCCCcE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGT---------ETIDVTDAVGSNI 81 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~---------~siC~~C~~gC~i 81 (523)
.+.+||.|+++||+||++.+.. +.|++... ...|..|..-|..
T Consensus 67 ~C~~C~~C~~~CP~~ai~~~~~----~~~~~~~~~~~~C~~~~~~~C~~C~~~CP~ 118 (163)
T PRK10194 67 ECSFCYACAQACPESLFSPRHT----RAWDLQFTIGDACLAYQSVECRRCQDSCEP 118 (163)
T ss_pred CCCCchhhHhhCcchheecccc----cccceeeeecccCCCccCCCcCcchhhCCH
Confidence 5888999999999999986542 23443321 1356667666753
No 80
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.26 E-value=0.019 Score=33.72 Aligned_cols=16 Identities=31% Similarity=0.767 Sum_probs=14.3
Q ss_pred cccccccccccccCcc
Q 009859 36 SELSGNVIDICPVGAL 51 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAl 51 (523)
|.-||.|+.+||.|||
T Consensus 9 C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 9 CIGCGDCVRVCPEGAI 24 (24)
T ss_pred CcChhHHHHhcchhcC
Confidence 5579999999999997
No 81
>PRK02651 photosystem I subunit VII; Provisional
Probab=93.21 E-value=0.035 Score=43.59 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=9.2
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|..||+|+++||++||+-+
T Consensus 48 C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 48 CVGCKRCETACPTDFLSIR 66 (81)
T ss_pred CCChhhhhhhcCCCceEEE
Confidence 3444555555555555443
No 82
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=93.19 E-value=0.052 Score=39.85 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=12.5
Q ss_pred Cccccccccccccc-Cccc
Q 009859 35 TSELSGNVIDICPV-GALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPv-GAlt 52 (523)
.+.-||.|+.+||| +|++
T Consensus 40 ~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 40 KCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp T--S-SCCCCCSSSTTSEE
T ss_pred cCcCcCcccccCCCccCCC
Confidence 57778899999998 8875
No 83
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=92.88 E-value=0.047 Score=47.69 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=8.9
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
|-+||+|.+.|||.||...|
T Consensus 152 CIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 152 CIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred eeeecchhhhCCccceeccC
Confidence 44444444444444444433
No 84
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=92.82 E-value=0.051 Score=46.39 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=16.7
Q ss_pred CCcCcccccccccccccCcccccc
Q 009859 32 KLMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
..-.|.-||.|+++||++|+.-..
T Consensus 41 ~~~~Ci~C~~C~~~CP~~ai~~~~ 64 (122)
T TIGR01971 41 GEEKCIGCTLCAAVCPADAIRVVP 64 (122)
T ss_pred CcCcCcCcchhhhhcCHhHeeeee
Confidence 344566788888888888776554
No 85
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=92.48 E-value=0.054 Score=49.07 Aligned_cols=18 Identities=11% Similarity=0.336 Sum_probs=15.6
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|..||.|+++||++++.
T Consensus 60 ~Ci~Cg~C~~aCP~~~~~ 77 (167)
T CHL00014 60 KCIACEVCVRVCPIDLPV 77 (167)
T ss_pred cCCCcCcHHHhCCCCCcc
Confidence 578899999999999874
No 86
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=92.10 E-value=0.056 Score=46.09 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=27.3
Q ss_pred CcccccccccccccCcccccccccccccccceeeeeeeccCCCCCcEE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIR 82 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~ 82 (523)
.|..||.|+.+||+||+...+-..+..-+. .....|..|...|...
T Consensus 43 ~Ci~C~~C~~~CP~~ai~~~~~~~~~~i~~--~~C~~Cg~Cv~~CP~~ 88 (120)
T PRK08348 43 KCVGCRMCVTVCPAGVFVYLPEIRKVALWT--GRCVFCGQCVDVCPTG 88 (120)
T ss_pred cCcCcccHHHHCCccceEccccccceEecC--CcCcChhhhHHhCCcC
Confidence 466799999999999986543111111111 2234566676777643
No 87
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=92.08 E-value=0.039 Score=41.55 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=17.2
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
+..||.|+++||+|||..+
T Consensus 2 C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 2 CITCGKCAEACPTGAISGE 20 (67)
T ss_pred CcchhHHHHhCcHhhccCC
Confidence 4578999999999999988
No 88
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=91.83 E-value=0.036 Score=39.44 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=22.3
Q ss_pred cccccccccccccCcccccccccccccccceeeeeeeccCC
Q 009859 36 SELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA 76 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~ 76 (523)
+.-||-|+++||++||.-.......+-..+...+..|.+|+
T Consensus 2 C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~ 42 (52)
T PF12838_consen 2 CIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCG 42 (52)
T ss_dssp -SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----S
T ss_pred CCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcC
Confidence 45689999999999999877644333334455566777775
No 89
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=91.57 E-value=0.062 Score=54.09 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=33.0
Q ss_pred ceeeeecCCCCceEecCCCCCcCccccccccccccc---Ccccccccccccccccceeee---eeeccCCCCCcEEE
Q 009859 13 QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPV---GALTSKPFAFKARNWELKGTE---TIDVTDAVGSNIRI 83 (523)
Q Consensus 13 ~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPv---GAlt~k~~~~~aR~Wel~~~~---siC~~C~~gC~i~v 83 (523)
.++|+++... ..+ ..-.|..||.|+++||+ ||+...... ....+ .-|.+|...|...+
T Consensus 154 ~DiG~~g~~~-~~~-----d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~-------~~id~~~C~~Cg~Cv~~CP~~A 217 (314)
T TIGR02912 154 HDFGIIGMTE-PQY-----DADRCIGCGACVKVCKKKAVGALSFENYK-------VVRDHSKCIGCGECVLKCPTGA 217 (314)
T ss_pred hhcccccccC-Cce-----eCccCCcchHHHHhcChhhcCceeccCCe-------EEeCCCcCcCcchhhhhCCHhh
Confidence 6777776442 111 12237889999999996 555544321 22333 34555666786543
No 90
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=90.47 E-value=0.086 Score=62.02 Aligned_cols=26 Identities=38% Similarity=0.707 Sum_probs=22.0
Q ss_pred CCcCcccccccccccccC--cccccccc
Q 009859 32 KLMTSELSGNVIDICPVG--ALTSKPFA 57 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvG--Alt~k~~~ 57 (523)
.+..|..||+|+++||++ ||+.+++.
T Consensus 737 ~~~~C~gCg~Cv~~CP~~~~Al~m~~~~ 764 (1165)
T TIGR02176 737 SPLDCTGCGNCVDICPAKEKALVMQPLA 764 (1165)
T ss_pred ccccCcCccchhhhcCCCCccccccchh
Confidence 456799999999999997 88888764
No 91
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=90.16 E-value=0.11 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=17.6
Q ss_pred cCcccccc--cccccccCcccccc
Q 009859 34 MTSELSGN--VIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~Gn--~idvCPvGAlt~k~ 55 (523)
..|.+|+. |+++||+|||+-..
T Consensus 97 ~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 97 IPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred CcCcCCCCCchhhccCccceEeec
Confidence 46889985 99999999997544
No 92
>CHL00065 psaC photosystem I subunit VII
Probab=89.11 E-value=0.12 Score=40.56 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=19.9
Q ss_pred CcccccccccccccCcccccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPFA 57 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~ 57 (523)
.+..||+|+++||++||+-+.|.
T Consensus 47 ~C~~C~~C~~~CP~~Ai~~~~~~ 69 (81)
T CHL00065 47 DCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred cCCChhhhhhhcCccccEEEEEe
Confidence 47789999999999999877754
No 93
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=88.92 E-value=0.21 Score=47.21 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=14.8
Q ss_pred Cccccc--ccccccccCcccc
Q 009859 35 TSELSG--NVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~G--n~idvCPvGAlt~ 53 (523)
.|.+|+ .|+++||+|||..
T Consensus 92 ~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 92 PCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred cCCCCCCchHHhHcCHhhhch
Confidence 477887 4888888888864
No 94
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=88.91 E-value=0.12 Score=41.57 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.4
Q ss_pred cCcccccccccccccCcccccc
Q 009859 34 MTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
-.|..||.|+++||++||+.-|
T Consensus 70 ~~C~~Cg~C~~~CP~~AI~~~~ 91 (91)
T TIGR02936 70 GNCIGCGACARVCPKKCQTHAP 91 (91)
T ss_pred ccCcChhhhhhhCCHhHEecCC
Confidence 3578999999999999997543
No 95
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=88.71 E-value=0.13 Score=59.00 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=40.9
Q ss_pred cccccccccccCcccccc-cccccccccceeeeee---eccCCCCCcEEEEEECCE--EEEEecCCCCCCCccccccccc
Q 009859 38 LSGNVIDICPVGALTSKP-FAFKARNWELKGTETI---DVTDAVGSNIRIDSRGPE--VMRILPRLNEDINEEWISDKTR 111 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~k~-~~~~aR~Wel~~~~si---C~~C~~gC~i~v~vr~g~--v~rv~~~~~~~~n~~~lC~kGr 111 (523)
.||+|+++||++|..+.. .-|.. --+.-..+.. |.+|..-|.....--..+ +..-+.+-....|.||+...|+
T Consensus 894 ~C~~C~~vCP~~A~~~i~~~g~~~-~~~~~~~~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d~~~s~n~gf~~~~~~ 972 (1019)
T PRK09853 894 VCEKCVDVCPNRANVSIAVPGFQN-RFQIVHLDAMCNECGNCAQFCPWNGKPYKDKITLFSLEEDFENSTNPGFLVEDGR 972 (1019)
T ss_pred ccchhhhhCCcccccccccCCccc-CCceEEcCccCccccchhhhCCCCCCcccccceEEcchhhhhcCcCCCeEEeCCc
Confidence 569999999999954443 11110 0112222344 455556677644322223 3444455566788888876554
Q ss_pred c
Q 009859 112 F 112 (523)
Q Consensus 112 ~ 112 (523)
.
T Consensus 973 ~ 973 (1019)
T PRK09853 973 V 973 (1019)
T ss_pred E
Confidence 4
No 96
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=88.59 E-value=0.13 Score=53.65 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=14.3
Q ss_pred cccccccccccccCcccccccccccccc
Q 009859 36 SELSGNVIDICPVGALTSKPFAFKARNW 63 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~aR~W 63 (523)
|..||.|+++||++|++......++++|
T Consensus 41 C~~C~~C~~~CP~~AI~~~~~~~~~~~~ 68 (411)
T TIGR03224 41 CNGCMACVSPCPTGAIDNWRTMLRAKAY 68 (411)
T ss_pred CcCHHHHHhhcCcccceecccccccccc
Confidence 4555666666666665544333333443
No 97
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.06 E-value=0.28 Score=51.50 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=9.6
Q ss_pred ccccccccccccc-Ccccccc
Q 009859 36 SELSGNVIDICPV-GALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPv-GAlt~k~ 55 (523)
|.-||.|+++||+ +||+-.+
T Consensus 379 C~~Cg~C~~~CP~~~Ai~~~~ 399 (420)
T PRK08318 379 CVGCNLCAHVCPVEGCITMGE 399 (420)
T ss_pred CcccchHHhhCCCCCCEEEec
Confidence 4444555555555 5544444
No 98
>PRK06273 ferredoxin; Provisional
Probab=87.85 E-value=0.21 Score=45.04 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.5
Q ss_pred CcCcccccccccccccCcccccccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSKPFAFK 59 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k~~~~~ 59 (523)
...|..||.|+++||++||+.+.-.+.
T Consensus 90 ~~kCi~Cg~C~~aCP~~AI~~~~~~~~ 116 (165)
T PRK06273 90 YEKCVYCLYCHDFCPVFALFNEISPIH 116 (165)
T ss_pred cccCcCCCCcchhCCHhheecccccCC
Confidence 346889999999999999966543333
No 99
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=87.79 E-value=0.27 Score=45.18 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.0
Q ss_pred cccccccccccccCcccc
Q 009859 36 SELSGNVIDICPVGALTS 53 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~ 53 (523)
|..||.|+++||+||+..
T Consensus 40 C~~C~~Cv~~CP~~ai~~ 57 (180)
T PRK12387 40 CIGCAACVNACPSNALTV 57 (180)
T ss_pred CcChhHHHHhcCccCeEe
Confidence 445556666666665543
No 100
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=86.69 E-value=0.29 Score=44.96 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=31.9
Q ss_pred CcccccccccccccCccccccccc-ccccccce-eeeeeeccCCCCCcEE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAF-KARNWELK-GTETIDVTDAVGSNIR 82 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~-~aR~Wel~-~~~siC~~C~~gC~i~ 82 (523)
.|..||.|+.+||+|||+-..-.. ..+.|.+. ...+.|..|...|...
T Consensus 39 ~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~ 88 (181)
T PRK08222 39 QCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTR 88 (181)
T ss_pred hCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcC
Confidence 367889999999999987543222 23455554 3566788888888643
No 101
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=85.99 E-value=0.36 Score=39.82 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=17.6
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||.|+++||+|++.-..
T Consensus 17 ~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 17 RCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred cccCCcchhhhcChhhhcccc
Confidence 467899999999999987543
No 102
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=85.95 E-value=4.4 Score=36.36 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC--CCCC-C------CceeecchhhHHhh-HHhcCCCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV--IRPD-W------NGLNVLLLNAAQAA-ALDLGLVP 347 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~--~~~~-g------~g~~~l~~~~n~~g-~~~~g~~p 347 (523)
.++++.|.+|++|+|++|.+..... ....+..|+..+|. +... + .|+.. ...+ .| ....+..|
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~----a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~--~~~~-lg~~g~~~~~p 90 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDE----EKELIVKFIEKFDLPVVATADTYRALIEAGIES--EEMN-LHEITQFLADP 90 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCccc----HHHHHHHHHHHHCCCEEEcCccccccccCCeec--CCCC-HHHHHHhccCc
Confidence 4567888999999999999987532 34444555555433 1000 0 12211 1111 11 11222334
Q ss_pred Cccc--cccCccEEEEEcCCCCCC-------CCCCCCceEEEEcccCCcccCcceEEecCCC
Q 009859 348 ESSN--SIESAKFVYLMGADDVDL-------EKLPNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 348 ~~~~--~~~~i~~l~~~g~n~~~~-------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
.... .+++-+.++++|.+.... +.+. .--+|.++-++- ..||+=+|.-+
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~~~y~---pnA~~Sf~n~~ 148 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAIDKYYQ---PNADYSFPNLS 148 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEecCCCC---CCCceeccccC
Confidence 4333 237889999999886421 2223 223566665553 34555555433
No 103
>PRK13984 putative oxidoreductase; Provisional
Probab=85.90 E-value=0.29 Score=53.99 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=16.9
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|..|+.|+++||++||+-.
T Consensus 87 ~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 87 RCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cCcCcchHHhhCCcCcEEec
Confidence 47789999999999997653
No 104
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=85.12 E-value=0.2 Score=35.89 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=17.6
Q ss_pred ccccccccccccCcccccccccc
Q 009859 37 ELSGNVIDICPVGALTSKPFAFK 59 (523)
Q Consensus 37 ~~~Gn~idvCPvGAlt~k~~~~~ 59 (523)
--||.|+++||++++........
T Consensus 3 i~Cg~C~~~CP~~~~~~~~~~~~ 25 (55)
T PF13187_consen 3 IGCGRCVEACPVGVIEFDEDGGK 25 (55)
T ss_dssp -TTTHHHHHSTTT-EEEETTTTC
T ss_pred CCcchHHHHCCccCeEccCcccc
Confidence 45899999999999988875544
No 105
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=84.87 E-value=3.4 Score=45.73 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
+++++.+++.|++.+ +..++.|... ..+....+.+|++.+|.+.+.+...-.. +...+|.....+. ...-+
T Consensus 211 ~~~v~~~~~~L~~Ak--rPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l 288 (616)
T PRK07418 211 PRQINAALKLIEEAE--RPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAV 288 (616)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHH
Confidence 578999999998764 4555665433 2234556889999999987754332211 1112222111121 12346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|++.......... . . ..+.++|.||...
T Consensus 289 ~~aDlvL~vG~~~~~~~~~~~~---~-~-~~~~~~i~id~d~ 325 (616)
T PRK07418 289 TECDLLIAVGARFDDRVTGKLD---E-F-ASRAKVIHIDIDP 325 (616)
T ss_pred HhCCEEEEEcCCCCccccCChh---h-c-CCCCeEEEEeCCH
Confidence 8999999999975432211011 1 1 2467899998643
No 106
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=84.69 E-value=0.41 Score=53.41 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=44.4
Q ss_pred CeeeecccccccceeeeecCCCCceEecCC----CCCcCcccccc--cccccccCcccccccccccccccceeeeeeecc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYV----EKLMTSELSGN--VIDICPVGALTSKPFAFKARNWELKGTETIDVT 74 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~----~~~~~~~~~Gn--~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~ 74 (523)
+|+..|.+..+........++....|.... ..+..|-.|++ |+++||+||+..+..... .+ .....-|..
T Consensus 17 ~C~~aC~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~---id-~~~C~~C~~ 92 (654)
T PRK12769 17 ACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQ---VN-QQKCIGCKS 92 (654)
T ss_pred HHHHHhhhhhccCCcccccccccceEEEeccccccCCccCCCCCChhHhhhCCccceeccCCeEE---Ee-cccccCcCh
Confidence 488888887665554444555554543221 13445778887 999999999876432111 00 112234556
Q ss_pred CCCCCcEE
Q 009859 75 DAVGSNIR 82 (523)
Q Consensus 75 C~~gC~i~ 82 (523)
|...|...
T Consensus 93 C~~~CP~~ 100 (654)
T PRK12769 93 CVVACPFG 100 (654)
T ss_pred hcccCCcc
Confidence 66667643
No 107
>PRK08322 acetolactate synthase; Reviewed
Probab=84.61 E-value=3 Score=45.46 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCCC--cccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNTS--ISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~~--~~di 212 (523)
+++++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+.... + .....+|.....+.. ..-+
T Consensus 183 ~~~i~~~~~~l~~A~--rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l 260 (547)
T PRK08322 183 PKAIERAAEAIQAAK--NPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAI 260 (547)
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHH
Confidence 577888999998763 5666666533 22334568899999998877543321 1 111223321112211 2347
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
+++|+||.+|++..+..+..+ . ...+.+++.||+...
T Consensus 261 ~~aDlil~lG~~l~~~~~~~~---~---~~~~~~~i~id~d~~ 297 (547)
T PRK08322 261 EHADLIINVGHDVIEKPPFFM---N---PNGDKKVIHINFLPA 297 (547)
T ss_pred HhCCEEEEECCCCcccccccc---C---CCCCCeEEEEeCCHH
Confidence 899999999998654322111 1 124579999987543
No 108
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=84.43 E-value=0.3 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.1
Q ss_pred cCcccccccccccccCccccc
Q 009859 34 MTSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k 54 (523)
-+|..||+|+|+||++|++-.
T Consensus 242 ~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 242 GDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred ccCcChhHHHhhcCccceeec
Confidence 468899999999999999654
No 109
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=84.41 E-value=3.5 Score=44.87 Aligned_cols=106 Identities=22% Similarity=0.153 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCC-CcHHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Cccccc
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRL-SDAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGLE 213 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~-~~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di~ 213 (523)
++++.+++.|++.+ +..++.|+. ...+....+.+|++.+|.+.+.+..... .....+|.....+. ...-++
T Consensus 188 ~~i~~aa~~L~~Ak--rPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 188 EAIRKAAELLAEAK--RPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHHHHHHHHhCC--CCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhh
Confidence 89999999999875 455555533 2223345688999999998776544321 11222333333332 224467
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+||+||++|+...+-.+. +..... ... |+.||...
T Consensus 266 ~aDlll~vG~rf~~~~~~----~~~f~~-~~~-ii~iDidp 300 (550)
T COG0028 266 EADLLLAVGARFDDRVTG----YSGFAP-PAA-IIHIDIDP 300 (550)
T ss_pred cCCEEEEecCCCcccccc----hhhhCC-cCC-EEEEeCCh
Confidence 899999999987764433 222222 223 88888764
No 110
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=84.29 E-value=6.6 Score=40.99 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCCCC-----C--------C----CCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 355 SAKFVYLMGADDVDLE-----K--------L----PNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 355 ~i~~l~~~g~n~~~~~-----~--------l----~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
+.+.++++|.||.... . + ++..-+|++|+..++|+..||..||...-
T Consensus 137 ~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~i~pg 200 (421)
T TIGR03129 137 RADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQIKPG 200 (421)
T ss_pred cCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceeccCCC
Confidence 5799999999985310 0 0 22346889999999999999999997754
No 111
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.14 E-value=5.7 Score=41.43 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCCCCC-----C--------C----CCCceEEEEcccCCcccCcceEEecCCC
Q 009859 355 SAKFVYLMGADDVDLE-----K--------L----PNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 355 ~i~~l~~~g~n~~~~~-----~--------l----~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
+.+.++++|.||.... . . ++..-+|++|+..+.|+..||..||...
T Consensus 131 ~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i~p 193 (415)
T cd02761 131 RADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQIDP 193 (415)
T ss_pred cCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEecCC
Confidence 6889999999986410 0 0 1333688999999999999999998664
No 112
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=83.45 E-value=0.83 Score=45.77 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.3
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|..|+.|++.||+|||...
T Consensus 207 C~~C~~C~~~CP~~Ai~~~ 225 (314)
T TIGR02486 207 CETCGKCADECPSGAISKG 225 (314)
T ss_pred CcchhHHHhhCCccccCCC
Confidence 5668899999999999755
No 113
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.41 E-value=4 Score=44.89 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 212 (523)
+++++.+++.|++.+ +..++.|... .......+.+|++.+|.+.+.+...-. .....+|.....+. ...-+
T Consensus 208 ~~~i~~~~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~ 285 (587)
T PRK06965 208 SGQIRKAVSLLLSAK--RPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAM 285 (587)
T ss_pred HHHHHHHHHHHHhcC--CCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 678999999998864 4555555433 223445688999999998764433221 11112222111121 12456
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+........-... ......++|.||...
T Consensus 286 ~~aDlvl~lG~~~~~~~~~~~~~----~~~~~~~~i~id~d~ 323 (587)
T PRK06965 286 QHCDVLIAIGARFDDRVIGNPAH----FASRPRKIIHIDIDP 323 (587)
T ss_pred HhCCEEEEECCCCcccccCChhh----cCCCCceEEEEeCCH
Confidence 89999999998754432100001 111357899998754
No 114
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=83.16 E-value=7.5 Score=35.20 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC--CCCC-------CCceeecchhhHHhhHHhcCCCCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV--IRPD-------WNGLNVLLLNAAQAAALDLGLVPE 348 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~--~~~~-------g~g~~~l~~~~n~~g~~~~g~~p~ 348 (523)
..+++.+.+|++|+|++|.++... ......+..|+..++. +... +.|+ .+...+..-....+..|.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~---~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv--~~~~~~lg~lg~~~~~p~ 99 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDD---EELLDRAVKIAKKANIPVAATGGSYKGLIDKGV--DAKYINLHELTNYLKDPN 99 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCcccc---chHHHHHHHHHHHHCCCEEEccccccccccCCc--cCCcccHHHHHhhccCch
Confidence 356778899999999999998751 2344555566665533 0000 1111 111111101112223344
Q ss_pred ccc--cccCccEEEEEcCCCCC-------CCCCCCCceEEEEcccCCcccCcceEEecC
Q 009859 349 SSN--SIESAKFVYLMGADDVD-------LEKLPNDAFVVYQGHHGDHGVYRANVILPA 398 (523)
Q Consensus 349 ~~~--~~~~i~~l~~~g~n~~~-------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~ 398 (523)
... ..++-+.++++|.+... .+.+.. --.|.++-+.. ..||+-+|.
T Consensus 100 ~e~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~~y~---~~a~~s~~~ 154 (171)
T PRK00945 100 WKGLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDRYYH---PNADMSFPN 154 (171)
T ss_pred hhhhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecCCcC---CCCceecCC
Confidence 333 24678999999988532 122333 23566665543 334554543
No 115
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=82.89 E-value=0.72 Score=39.24 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.3
Q ss_pred cCcccccccccccccCccccccc
Q 009859 34 MTSELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~~ 56 (523)
-.|..||+|+++||+|||+-..+
T Consensus 82 ~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 82 GRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred ccCCCCCchhhhCCCccccccce
Confidence 35789999999999999977653
No 116
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=82.84 E-value=0.46 Score=37.14 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.3
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||.|+++||+++|+-.+
T Consensus 9 ~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 9 TCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred cCcCcchHHHHCCccceeeec
Confidence 456799999999999987654
No 117
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.79 E-value=4 Score=45.02 Aligned_cols=110 Identities=16% Similarity=0.034 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC--c-HHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Cc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS--D-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SI 209 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~--~-~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~ 209 (523)
..++++.+++.|.+.+ +..++.|... . .+....+.+|++.+|.+.+.+...-. .+....|.....+. ..
T Consensus 198 ~~~~l~~a~~~L~~A~--rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~ 275 (595)
T PRK09107 198 DAEAITEAVELLANAK--RPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEAN 275 (595)
T ss_pred CHHHHHHHHHHHHhCC--CcEEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHH
Confidence 4578999999998864 5556666432 2 24556789999999998764433211 11111221111111 12
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
.-+++||+||++|+...+........ . ..+.++|.||....
T Consensus 276 ~~l~~aDlvL~lG~~~~~~~~~~~~~----~-~~~~~~I~id~d~~ 316 (595)
T PRK09107 276 MAMHDCDVMLCVGARFDDRITGRLDA----F-SPNSKKIHIDIDPS 316 (595)
T ss_pred HHHHhCCEEEEECCCCCccccCchhh----c-CCCCeEEEEECCHH
Confidence 35689999999998754432111111 1 13568999987543
No 118
>PRK02651 photosystem I subunit VII; Provisional
Probab=82.25 E-value=0.61 Score=36.44 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.3
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||.|+++||+++++-.+
T Consensus 10 ~Ci~C~~C~~~CP~~~i~~~~ 30 (81)
T PRK02651 10 TCIGCTQCVRACPLDVLEMVP 30 (81)
T ss_pred cCCCcchHHHHCCccceeccc
Confidence 466799999999999987544
No 119
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=82.01 E-value=0.56 Score=37.90 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=16.4
Q ss_pred cccccccccccccCcccc
Q 009859 36 SELSGNVIDICPVGALTS 53 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~ 53 (523)
|--||.|+++||++||+-
T Consensus 31 Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 31 CIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred cCCCCCchhhCCHHHhhc
Confidence 667999999999999987
No 120
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=81.79 E-value=0.51 Score=39.10 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||+|+++||.+|++-+.
T Consensus 82 ~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 82 YCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred hCCCcCchhhhcCcCcEEEec
Confidence 678899999999999997553
No 121
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.63 E-value=5.3 Score=44.30 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=36.7
Q ss_pred ccCccEEEEEcCCCCC--C-------CCCCC-CceEEEEcccCCcccCcceEEecCCC
Q 009859 353 IESAKFVYLMGADDVD--L-------EKLPN-DAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~--~-------~~l~~-~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
-.+.+.++++|+||.. + ++.++ ..-+|++|+..|+|+..||+.||...
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irP 224 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRS 224 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCC
Confidence 3457899999999852 1 12223 44689999999999999999999764
No 122
>COG1146 Ferredoxin [Energy production and conversion]
Probab=81.62 E-value=0.9 Score=34.25 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=7.6
Q ss_pred cccccccccccCccc
Q 009859 38 LSGNVIDICPVGALT 52 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt 52 (523)
-||.|+.+||++|+.
T Consensus 45 ~C~~C~~~CP~~aI~ 59 (68)
T COG1146 45 DCGLCELACPVGAIK 59 (68)
T ss_pred cchhhhhhCCcceEE
Confidence 355555555555543
No 123
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.45 E-value=5.6 Score=43.63 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~d 211 (523)
.+++++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+.+...-. .+...+|.....+. ...-
T Consensus 192 ~~~~i~~a~~~L~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~ 269 (574)
T PRK07979 192 HKGQIKRALQTLVAAK--KPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMT 269 (574)
T ss_pred CHHHHHHHHHHHHcCC--CCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHH
Confidence 4788999999998764 5556666433 223345688999999998765433221 11122222111121 1245
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
+++||+||++|+...+...... .. . ...+++|.||....
T Consensus 270 l~~aDlvl~vG~~~~~~~~~~~---~~-~-~~~~~~i~id~d~~ 308 (574)
T PRK07979 270 MHNADVIFAVGVRFDDRTTNNL---AK-Y-CPNATVLHIDIDPT 308 (574)
T ss_pred HHhCCEEEEeCCCCcccccCCh---hh-c-CCCCeEEEEECCHH
Confidence 6899999999987544322111 11 1 13468999987543
No 124
>PRK08764 ferredoxin; Provisional
Probab=81.43 E-value=0.56 Score=40.84 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.7
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|..||.|+++||+|||+
T Consensus 116 ~C~~Cg~Cv~~CP~~Ai~ 133 (135)
T PRK08764 116 LCTGCELCVPACPVDCIE 133 (135)
T ss_pred cCcCccchhhhcCccceE
Confidence 477899999999999986
No 125
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=81.07 E-value=0.47 Score=42.88 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=11.1
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|..||.|+++||+|||+-.
T Consensus 145 C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 145 CTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ccChhHHHHhcCcCceEee
Confidence 4456666666666666543
No 126
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=80.93 E-value=0.54 Score=38.94 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.5
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+++||++|++-..
T Consensus 82 ~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09623 82 YCKGCGICANECPTKAITMVK 102 (105)
T ss_pred hCcCcchhhhhcCcCcEEecc
Confidence 477899999999999996543
No 127
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=80.81 E-value=0.31 Score=48.08 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.5
Q ss_pred cccccccccccccCcccc
Q 009859 36 SELSGNVIDICPVGALTS 53 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~ 53 (523)
|.-|+.|++.||||||..
T Consensus 161 C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 161 CGRCTKCIDACPTQALVE 178 (282)
T ss_pred CccHHHHHHhcCcccccC
Confidence 566889999999999973
No 128
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=80.62 E-value=6.4 Score=43.06 Aligned_cols=109 Identities=15% Similarity=0.033 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~d 211 (523)
-.++++.+++.|.+.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. ++..+|.....+. .-.-
T Consensus 193 ~~~~i~~~a~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~ 270 (561)
T PRK06048 193 NPQQIKRAAELIMKAE--RPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYA 270 (561)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHH
Confidence 3578999999998764 55566654322 123456889999999987654332111 1122222111111 1235
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++||+||++|+.......... .. . ..+.++|.||...
T Consensus 271 l~~aD~vl~lG~~~~~~~~~~~---~~-~-~~~~~~I~id~d~ 308 (561)
T PRK06048 271 IQESDLIIAVGARFDDRVTGKL---AS-F-APNAKIIHIDIDP 308 (561)
T ss_pred HHhCCEEEEECCCCCccccCCh---hh-c-CCCCeEEEEECCH
Confidence 7899999999998654322111 11 1 2457899998654
No 129
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=80.61 E-value=6.9 Score=43.03 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--cccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di 212 (523)
++.++.+++.|.+. ++..++.|.... ......+.+|++.+|.+.+.+...-.. +...+|.....+.. ..-+
T Consensus 204 ~~~v~~a~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l 281 (585)
T CHL00099 204 IKRIEQAAKLILQS--SQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAV 281 (585)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHH
Confidence 57788889988876 356666665432 233456889999999987754332211 11112221111111 1345
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+......... ... . ..+.++|.||...
T Consensus 282 ~~aDlvL~lG~~~~~~~~~~---~~~-~-~~~~~~i~id~d~ 318 (585)
T CHL00099 282 SECDLLIALGARFDDRVTGK---LDE-F-ACNAQVIHIDIDP 318 (585)
T ss_pred HhCCEEEEECCCCcccccCC---HhH-c-CCCCeEEEEECCH
Confidence 89999999998754422110 111 1 2467899998643
No 130
>PLN02470 acetolactate synthase
Probab=80.59 E-value=6.7 Score=43.16 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGL 212 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di 212 (523)
-+++++.+++.|.+. ++..++.|.... .....+.+|++.+|.+.+.+...-.. ....+|.....+.. -..+
T Consensus 201 ~~~~i~~~~~~L~~A--~rPvI~~G~g~~-~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~ 277 (585)
T PLN02470 201 EKSQLEQIVRLISES--KRPVVYVGGGCL-NSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAV 277 (585)
T ss_pred CHHHHHHHHHHHHcC--CCCEEEECCChh-hhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHH
Confidence 367899999999876 366667765432 33456889999999877644332111 11112211111111 2457
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+...+........ . ....++|.||+..
T Consensus 278 ~~aDlvl~lG~~l~~~~~~~~~~----~-~~~~~~I~id~d~ 314 (585)
T PLN02470 278 DSADLLLAFGVRFDDRVTGKLEA----F-ASRASIVHIDIDP 314 (585)
T ss_pred HhCCEEEEECCCCcccccCChhh----c-CCCCeEEEEECCH
Confidence 89999999998643322110111 1 1346899998754
No 131
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=79.85 E-value=0.69 Score=35.82 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.5
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.+..||.|+++||++|++-
T Consensus 56 ~C~~C~~C~~~CP~~Ai~~ 74 (78)
T TIGR02179 56 YCKGCGICANVCPVKAIEM 74 (78)
T ss_pred cCcCccchhhhCCccccEe
Confidence 5778999999999999864
No 132
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=79.78 E-value=11 Score=39.59 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhh--hhhcC-cccCC-Cc-ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNA--DLRSG-YIMNT-SI-SGLEK 214 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~-~di~~ 214 (523)
+++++.+++.|++.+ +..++.|..........+.+|++.+|.+.+.+......... .+|.. ...+. .. .-+ +
T Consensus 198 ~~~i~~~~~~l~~Ak--rPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~ 274 (432)
T TIGR00173 198 PESLDELWDRLNQAK--RGVIVAGPLPPAEDAEALAALAEALGWPLLADPLSGLRGGPHLVIDHYDLLLANPELREEL-Q 274 (432)
T ss_pred hhhHHHHHHHHhhcC--CcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCcCHHHHHhcCCchhhhC-C
Confidence 567888888888763 55566665433234556788999999887644332211111 11100 01111 11 224 8
Q ss_pred CCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 215 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 215 ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
+|+||.+|+...... .. ..+ ...+.++|.||....
T Consensus 275 aDlvl~lG~~~~~~~-~~-~~~----~~~~~~~i~vd~d~~ 309 (432)
T TIGR00173 275 PDLVIRFGGPPVSKR-LR-QWL----ARQPAEYWVVDPDPG 309 (432)
T ss_pred CCEEEEeCCCcchhH-HH-HHH----hCCCCcEEEECCCCC
Confidence 999999998754321 11 111 124579999987543
No 133
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=79.41 E-value=0.66 Score=42.58 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=18.6
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.+||.|+++||+||++-..
T Consensus 74 ~C~~Cg~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 74 RCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred cCcCCCCcccccCcCeEEecc
Confidence 588999999999999998664
No 134
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=79.28 E-value=3.8 Score=38.43 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=32.3
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCc
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 258 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~ 258 (523)
..+++++|++|++|+..... |. ..-.+.+ +++|++|++|++..+..-
T Consensus 150 ~~~~~~aDlllviGTSl~V~-pa-~~l~~~~-~~~g~~vi~iN~~~~~~d 196 (206)
T cd01410 150 AAAACRADLFLCLGTSLQVT-PA-ANLPLKA-ARAGGRLVIVNLQPTPKD 196 (206)
T ss_pred HHHHhcCCEEEEECcCceeh-hH-HHHHHHH-HhcCCeEEEECCCCCCCC
Confidence 34567899999999976543 43 2223444 458999999999766543
No 135
>PRK07118 ferredoxin; Validated
Probab=79.14 E-value=0.68 Score=45.62 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=31.6
Q ss_pred CeeeecccccccceeeeecCCCCceEecCC-------CC--CcCcccccccccccccCcccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYV-------EK--LMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~-------~~--~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
+|++.|-. .+|.+..++....+.... .+ ...|-.||.|+++||++|++-+.
T Consensus 175 ~Cv~aCP~----~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 175 ACVKACPR----NVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred HHHHhcCc----cceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 36666653 455555565555543211 11 23467899999999999998765
No 136
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=78.87 E-value=7.3 Score=42.65 Aligned_cols=108 Identities=20% Similarity=0.126 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
++.++.+++.|.+.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. +...+|.....+. ...-+
T Consensus 197 ~~~i~~~~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~ 274 (566)
T PRK07282 197 DMQIKKILKQLSKAK--KPVILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAM 274 (566)
T ss_pred HHHHHHHHHHHHcCC--CcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 567899999998764 55566664331 123456889999999887654332211 1122232111121 12356
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+...+........ . ....++|.||...
T Consensus 275 ~~aD~vl~lG~~l~~~~~~~~~~----~-~~~~~~i~id~d~ 311 (566)
T PRK07282 275 TEADFMINIGSRFDDRLTGNPKT----F-AKNAKVAHIDIDP 311 (566)
T ss_pred HhCCEEEEECCCCCccccCChhh----c-CCCCeEEEEECCH
Confidence 89999999999865432211111 1 1346899998643
No 137
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=78.01 E-value=5.8 Score=43.77 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
.+++++.+++.|++.+ +..++.|.... .....+.+|++.+|.+.+.+...-.. ++..+|.....+. ...-+
T Consensus 194 ~~~~i~~a~~~L~~Ak--rPvi~~G~g~~-~a~~~l~~lae~~~~PV~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~ 270 (597)
T PRK08273 194 YDEDLRRAAEVLNAGR--KVAILVGAGAL-GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELM 270 (597)
T ss_pred CHHHHHHHHHHHhcCC--CEEEEECcchH-hHHHHHHHHHHHhCCceeecccCcccCCCCCccceecCCCCccHHHHHHH
Confidence 4678999999998763 66677775543 34556889999999987654332111 1112222112221 12347
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+..... ..+. +...+++|.||...
T Consensus 271 ~~aDlvl~lG~~~~~~-----~~~~---~~~~~~~i~Id~d~ 304 (597)
T PRK08273 271 RECDTLLMVGSSFPYS-----EFLP---KEGQARGVQIDIDG 304 (597)
T ss_pred HhCCEEEEeCCCCCHH-----hcCC---CCCCCeEEEEeCCH
Confidence 8999999999975211 0111 11357999998754
No 138
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=77.99 E-value=1.5 Score=38.07 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC-C-ccccccC
Q 009859 143 LAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT-S-ISGLEKA 215 (523)
Q Consensus 143 l~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~-~-~~di~~a 215 (523)
++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+.+...-.. ....+|.....+. . .+-+++|
T Consensus 1 i~~~~~~L~~A~--rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~a 78 (137)
T PF00205_consen 1 IDEAADLLSSAK--RPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQA 78 (137)
T ss_dssp HHHHHHHHHH-S--SEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHS
T ss_pred CHHHHHHHHhCC--CEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCC
Confidence 467788888764 66677764321 123345889999999877544332211 1112221111111 1 2345899
Q ss_pred CEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 216 DCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 216 d~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
|+||++|+.+......- ... .. ....++|.||+....
T Consensus 79 Dlvl~iG~~~~~~~~~~-~~~--~~-~~~~~~I~I~~d~~~ 115 (137)
T PF00205_consen 79 DLVLAIGTRLSDFNTYG-FSP--AF-NPDAKIIQIDPDPAE 115 (137)
T ss_dssp SEEEEESSSSSTTTTTT-TTG--CS-TTTSEEEEEESSGGG
T ss_pred CEEEEECCCCccccccc-ccc--cc-CCCCEEEEEECCHHH
Confidence 99999998765522111 000 11 123499999986543
No 139
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=77.97 E-value=1.2 Score=23.69 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=10.8
Q ss_pred cccccccccccccC
Q 009859 36 SELSGNVIDICPVG 49 (523)
Q Consensus 36 ~~~~Gn~idvCPvG 49 (523)
+.-||.|+++||++
T Consensus 4 C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 4 CIGCGSCVDVCPTQ 17 (17)
T ss_dssp CTTSSSSTTTSTT-
T ss_pred CCCCchHHhhccCC
Confidence 34589999999974
No 140
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=77.57 E-value=9.4 Score=41.82 Aligned_cols=105 Identities=22% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCC-CccccccCC
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT-SISGLEKAD 216 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~di~~ad 216 (523)
.++.++.+++.|++.+ +..++.|... ..+....+.+|++.+|.+.+.+...-.....+. ....|. .-.-++++|
T Consensus 206 ~~~~~~~~~~~L~~Ak--rPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~h--p~~~G~~~~~~~~~aD 281 (569)
T PRK08327 206 DPEDIARAAEMLAAAE--RPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDH--PLHLGPDPRADLAEAD 281 (569)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCC--ccccccccchhhhhCC
Confidence 4678899999998864 5555555432 223455689999999998774332211111110 001121 224468999
Q ss_pred EEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 217 CFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 217 ~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+||++|++..... .. .+ . ....+++.||...
T Consensus 282 lvl~lG~~l~~~~-~~---~~--~-~~~~~vi~Id~d~ 312 (569)
T PRK08327 282 LVLVVDSDVPWIP-KK---IR--P-DADARVIQIDVDP 312 (569)
T ss_pred EEEEeCCCCCCcc-cc---cc--C-CCCCeEEEEeCCh
Confidence 9999998753221 11 11 1 2457899998754
No 141
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=77.34 E-value=7.7 Score=42.18 Aligned_cols=109 Identities=19% Similarity=0.103 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccch-----hhhhhcCcccCC--Ccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQS-----NADLRSGYIMNT--SIS 210 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~ 210 (523)
-+++++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+...-..+ ...+|..+.++. ...
T Consensus 181 ~~~~i~~~~~~l~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~~~G~~G~~~~~~~~~ 258 (539)
T TIGR02418 181 PDDAIDEVAEAIQNAK--LPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDHFFGRVGLFRNQPGDR 258 (539)
T ss_pred CHHHHHHHHHHHHcCC--CCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChhhcccCcCCCcHHHHH
Confidence 3568888899888763 5556666433 22345568899999999877543221111 111222212221 123
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
-+++||+||++|+++....+..+. . ....++|.||....
T Consensus 259 ~~~~aDlvl~lG~~~~~~~~~~~~-----~-~~~~~~i~id~d~~ 297 (539)
T TIGR02418 259 LLKQADLVITIGYDPIEYEPRNWN-----S-ENDATIVHIDVEPA 297 (539)
T ss_pred HHHhCCEEEEecCcccccCccccC-----c-CCCCeEEEEeCChH
Confidence 568999999999886543321111 1 13468999987543
No 142
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=77.27 E-value=7 Score=42.86 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~d 211 (523)
.+++++.+++.|++.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. +...+|.....+. ...-
T Consensus 192 ~~~~i~~~~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~ 269 (572)
T PRK08979 192 HKGQIKRGLQALLAAK--KPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMA 269 (572)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCCCHHHHHH
Confidence 4678999999998764 55566654331 123345789999999987754432211 1112221111121 1235
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++||+||++|+...+........ . ....|+|.||...
T Consensus 270 ~~~aD~vl~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 307 (572)
T PRK08979 270 MHNADLIFGIGVRFDDRTTNNLEK----Y-CPNATILHIDIDP 307 (572)
T ss_pred HHhCCEEEEEcCCCCccccCchhh----c-CCCCeEEEEECCH
Confidence 689999999998764432111111 1 1357899998743
No 143
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=77.12 E-value=5.3 Score=44.12 Aligned_cols=50 Identities=28% Similarity=0.173 Sum_probs=37.7
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCC-ceEEEEcccCCcccCcceEEecCCCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPND-AFVVYQGHHGDHGVYRANVILPASAFSE 403 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~-~fvV~~d~~~t~ta~~ADvvLP~a~~~E 403 (523)
.+.+.++++|.||... ++.++. .-+|++|+..++|+..||..||.....|
T Consensus 361 ~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 361 EEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred HhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeecCCcc
Confidence 4578999999998641 122232 4689999999999999999998765443
No 144
>PRK08617 acetolactate synthase; Reviewed
Probab=76.99 E-value=9.1 Score=41.76 Aligned_cols=107 Identities=17% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hh-hhhhcCcccCCC--ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SN-ADLRSGYIMNTS--ISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~-~~~~~~~~~~~~--~~d 211 (523)
++.++.+++.|.+. ++..++.|... ..+....+.+|++.+|.+.+.+...-.. +. ..+|....++.. ..-
T Consensus 188 ~~~i~~~~~~L~~A--krPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~ 265 (552)
T PRK08617 188 PEDINYLAELIKNA--KLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDEL 265 (552)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCchhhccCCcCCCcHHHHHH
Confidence 56788888888875 35666666543 2234556889999999887654322111 11 122322222211 133
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||.+|+.+....+..+. . ....++|.||...
T Consensus 266 ~~~aDlvl~lG~~~~~~~~~~~~---~---~~~~~~i~id~d~ 302 (552)
T PRK08617 266 LKKADLVITIGYDPIEYEPRNWN---S---EGDATIIHIDVLP 302 (552)
T ss_pred HHhCCEEEEecCccccccccccc---c---CCCCcEEEEeCCh
Confidence 78999999999876443321111 0 1246899998754
No 145
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=76.88 E-value=10 Score=41.40 Aligned_cols=108 Identities=12% Similarity=0.030 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--cccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di 212 (523)
.++++.+++.|.+. ++..++.|... .......+.+|++.+|.+.+.+...... ....+|.....+.. -.-+
T Consensus 198 ~~~i~~~~~~L~~A--krPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l 275 (564)
T PRK08155 198 EESIRDAAAMINAA--KRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYIL 275 (564)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHH
Confidence 56788999998875 35556666433 2223456889999999987754332211 11222211111111 1346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||.+|+............ . ....++|.||...
T Consensus 276 ~~aDlvl~lG~~~~~~~~~~~~~----~-~~~~~~I~id~d~ 312 (564)
T PRK08155 276 QEADLLIVLGARFDDRAIGKTEQ----F-CPNAKIIHVDIDR 312 (564)
T ss_pred HhCCEEEEECCCCCccccCCHhh----c-CCCCeEEEEECCH
Confidence 89999999998755432111111 1 2457899998754
No 146
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=76.60 E-value=0.72 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.2
Q ss_pred CcCcccccccccccccCccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k 54 (523)
...|..||+|.++||+|.-+..
T Consensus 342 ~~~C~~Cg~C~~vCP~gI~~~~ 363 (432)
T TIGR00273 342 PYLSSLCGACREVCPVKIPLPE 363 (432)
T ss_pred CccchhhhhhhccCCCCCcHHH
Confidence 3468899999999999765443
No 147
>PRK06991 ferredoxin; Provisional
Probab=76.44 E-value=0.56 Score=45.82 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=8.9
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
|..||.|+.+||++||.-.+
T Consensus 117 CigCg~Cv~vCP~~AI~~~~ 136 (270)
T PRK06991 117 CTGCDLCVPPCPVDCIDMVP 136 (270)
T ss_pred CCCchHHHhhCCcCCeEeec
Confidence 44444444444444444333
No 148
>PLN00071 photosystem I subunit VII; Provisional
Probab=76.37 E-value=0.86 Score=35.63 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.7
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||+|+++||+++++-.+
T Consensus 10 ~C~~C~~C~~~CP~~~i~~~~ 30 (81)
T PLN00071 10 TCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCcChhHHHHHCCccceeeec
Confidence 466799999999999987654
No 149
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=76.19 E-value=1.3 Score=52.40 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.6
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+.+||++|+.-+
T Consensus 684 ~Ci~Cg~C~~vCP~~ai~~~ 703 (1165)
T TIGR02176 684 NCIQCNQCAFVCPHAAIRPK 703 (1165)
T ss_pred cCCCccchHHhcChhhcccc
Confidence 47889999999999999754
No 150
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=76.19 E-value=1.1 Score=38.07 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=18.0
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+++||+|||.-..
T Consensus 74 ~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 74 RCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred cCcChhhhHHhCCcCcEEecc
Confidence 578899999999999998665
No 151
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=76.12 E-value=1.6 Score=42.12 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=32.5
Q ss_pred cccccccccccccCcccccccccccccccc-eeeeeeeccCCCCCcEEE----EEECCEEEEEe
Q 009859 36 SELSGNVIDICPVGALTSKPFAFKARNWEL-KGTETIDVTDAVGSNIRI----DSRGPEVMRIL 94 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel-~~~~siC~~C~~gC~i~v----~vr~g~v~rv~ 94 (523)
|..||.|.++|+-||+.- .+.+.|.+ ....+=|..|+.-|+... .++-|+|++-.
T Consensus 71 C~~CG~C~~vC~f~Ai~~----~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k 130 (284)
T COG1149 71 CIRCGKCAEVCRFGAIVV----LPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESK 130 (284)
T ss_pred ccccCcHHHhCCCCeEEE----cCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEE
Confidence 778999999999999942 22333443 334444455556676542 22335555443
No 152
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=76.06 E-value=0.8 Score=39.74 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=15.8
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|..||.|+++||++|+.
T Consensus 90 ~C~~Cg~Cv~vCP~~a~~ 107 (133)
T PRK09625 90 HCKGCGVCVEVCPTNPKS 107 (133)
T ss_pred cCcChhHHHHHCCcCceE
Confidence 488999999999999953
No 153
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=75.89 E-value=13 Score=40.96 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCccc-CCC--c
Q 009859 138 NWRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIM-NTS--I 209 (523)
Q Consensus 138 sWdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~-~~~--~ 209 (523)
.-.++++.+++.|...+ +..++.|... ..+....+.+|++.+|.+.+.+...- + .+...+|..... +.. .
T Consensus 187 ~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~ 264 (588)
T TIGR01504 187 ATRAQIEKAVEMLNAAE--RPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGN 264 (588)
T ss_pred CCHHHHHHHHHHHHhCC--CcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHH
Confidence 34688999999998764 5556666443 22445668999999999877543322 1 112223321111 111 1
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
.-+++||+||++|+........ ... .. ..+.++|.||...
T Consensus 265 ~~l~~aD~iL~lG~~l~~~~t~-~~~---~~-~~~~~~I~id~d~ 304 (588)
T TIGR01504 265 ATLLESDFVFGIGNRWANRHTG-SVD---VY-TEGRKFVHVDIEP 304 (588)
T ss_pred HHHHhCCEEEEECCCCCccccC-ccc---cc-CCCCeEEEeeCCH
Confidence 3468999999999885432211 110 01 2467899998643
No 154
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=75.79 E-value=5.9 Score=43.38 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcCcccCCCccccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNTSISGLE 213 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~di~ 213 (523)
-++.++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+...-..+ ...+|. . ...-++
T Consensus 199 ~~~~l~~~~~~L~~Ak--rPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~---~--~~~~l~ 271 (569)
T PRK09259 199 APEAVDRALDLLKKAK--RPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAA---A--RSLALA 271 (569)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhH---H--HHHHHh
Confidence 3678899999998764 5555665432 22345668899999999887544322111 111111 0 112378
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+||+||++|++.......... ... ..+.+++.||...
T Consensus 272 ~aDlvl~lG~~~~~~~~~~~~---~~~-~~~~~ii~Id~d~ 308 (569)
T PRK09259 272 NADVVLLVGARLNWLLSHGKG---KTW-GADKKFIQIDIEP 308 (569)
T ss_pred cCCEEEEeCCCCchhcccCch---hcc-CCCCcEEEecCCh
Confidence 999999999876432111010 001 1457899988643
No 155
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=75.60 E-value=8.6 Score=41.98 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di 212 (523)
++.++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+...- + .....+|.....+. ...-+
T Consensus 191 ~~~i~~~~~~L~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l 268 (557)
T PRK08199 191 AADLARLAELLARAE--RPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARI 268 (557)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHH
Confidence 577888888888764 5555665432 22345668899999999877543211 1 11122222111111 12346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||++|+.+..-.......+... ....+++.||...
T Consensus 269 ~~aDlvl~lG~~~~~~~~~~~~~~~~~--~~~~~~i~vd~d~ 308 (557)
T PRK08199 269 READLVLAVGTRLGEVTTQGYTLLDIP--VPRQTLVHVHPDA 308 (557)
T ss_pred HhCCEEEEeCCCCcccccccccccccc--CCCCeEEEEeCCH
Confidence 799999999987543221111111111 1356899998654
No 156
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=75.51 E-value=7.1 Score=42.83 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Cccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di~ 213 (523)
+++++.+++.|++.+ +..++.|.... .....+.+|++.+|.+.+.+...-.. ....+|.....+. ...-++
T Consensus 187 ~~~v~~~~~~L~~Ak--rPvil~G~g~~-~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~ 263 (575)
T TIGR02720 187 VEAVTRAVQTLKAAE--RPVIYYGIGAR-KAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQKPANEALF 263 (575)
T ss_pred HHHHHHHHHHHHcCC--CcEEEECcchh-hHHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCcCCCcHHHHHHHH
Confidence 468999999998864 56666665442 23456889999999987754432211 1112221111111 123468
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||++|+..... .. . .... ...++|.||+..
T Consensus 264 ~aDlvl~vG~~~~~~-~~-~----~~~~-~~~~~I~id~d~ 297 (575)
T TIGR02720 264 QADLVLFVGNNYPFA-EV-S----KAFK-NTKYFIQIDIDP 297 (575)
T ss_pred hCCEEEEeCCCCCcc-cc-c----cccC-CCceEEEEeCCH
Confidence 999999999975321 11 1 1111 345568898754
No 157
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.25 E-value=9 Score=42.03 Aligned_cols=108 Identities=18% Similarity=0.054 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
++.++.+++.|.+.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. ....+|.....+. ...-+
T Consensus 193 ~~~i~~~~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l 270 (574)
T PRK06466 193 SGQIRKAVEMLLAAK--RPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAM 270 (574)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCccccCHHHHHHH
Confidence 577899999998764 55566664332 223456889999999988755432211 1122221111111 12346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+...+........ . ....++|.||...
T Consensus 271 ~~aD~il~vG~~~~~~~~~~~~~----~-~~~~~vi~id~d~ 307 (574)
T PRK06466 271 HHADVILAVGARFDDRVTNGPAK----F-CPNAKIIHIDIDP 307 (574)
T ss_pred HhCCEEEEECCCCCccccCchhh----c-CCCCeEEEEECCH
Confidence 89999999998754422111111 1 1356899998754
No 158
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.11 E-value=12 Score=41.15 Aligned_cols=109 Identities=15% Similarity=-0.043 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
+++++.+++.|++.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. ....+|.....+. ...-+
T Consensus 201 ~~~~~~~~~~L~~A~--rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l 278 (570)
T PRK06725 201 SMKLREVAKAISKAK--RPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAV 278 (570)
T ss_pred HHHHHHHHHHHHcCC--CcEEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 578999999998764 56666665432 223456888999999887644332211 1112221111111 12457
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
++||+||++|+...+........ . ....++|.||....
T Consensus 279 ~~aDlil~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~~ 316 (570)
T PRK06725 279 TECDLLLALGVRFDDRVTGKLEL----F-SPHSKKVHIDIDPS 316 (570)
T ss_pred HhCCEEEEeCCCCCccccCcccc----c-CCCCeEEEEeCCHH
Confidence 89999999998754322111100 1 13468898886543
No 159
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=75.08 E-value=17 Score=35.85 Aligned_cols=106 Identities=16% Similarity=0.075 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 219 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 219 (523)
+++|+.+++.|.+. ++|.+++.+.+..-..++..+| ..+|-+........ .. . .....+..-|++|
T Consensus 117 ~~~l~~av~~L~~A--~rI~~~G~g~S~~vA~~~~~~l-~~ig~~~~~~~d~~--------~~--~-~~~~~~~~~Dv~i 182 (281)
T COG1737 117 EEALERAVELLAKA--RRIYFFGLGSSGLVASDLAYKL-MRIGLNVVALSDTH--------GQ--L-MQLALLTPGDVVI 182 (281)
T ss_pred HHHHHHHHHHHHcC--CeEEEEEechhHHHHHHHHHHH-HHcCCceeEecchH--------HH--H-HHHHhCCCCCEEE
Confidence 46677777777765 4677777555444344445555 45565433222111 00 0 1345667789999
Q ss_pred EEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC-CCCCcchhc
Q 009859 220 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA-TDLNYDHQH 262 (523)
Q Consensus 220 ~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~-~~~t~~~a~ 262 (523)
.+.-..... -+...++.+ +++|+++|.|-.. .++.+..++
T Consensus 183 ~iS~sG~t~--e~i~~a~~a-k~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 183 AISFSGYTR--EIVEAAELA-KERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred EEeCCCCcH--HHHHHHHHH-HHCCCcEEEEcCCCCCchhhhhc
Confidence 987554332 233444554 4699999999654 555444444
No 160
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=75.01 E-value=9.9 Score=41.43 Aligned_cols=108 Identities=20% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCC-CcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRL-SDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~-~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
.++++.+++.|.+.+ +..++.|.. ........+.+|++.+|.+.+.+...-.. ....+|.....+. ...-+
T Consensus 183 ~~~l~~~~~~L~~Ak--rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l 260 (548)
T PRK08978 183 AAELEQARALLAQAK--KPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAV 260 (548)
T ss_pred HHHHHHHHHHHHcCC--CCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHH
Confidence 578888999888763 555666643 22223456788999999987644322111 1111221111111 11345
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||++|+....... . .... . ....++|.||+..
T Consensus 261 ~~aD~vl~lG~~~~~~~~--~-~~~~-~-~~~~~~i~id~d~ 297 (548)
T PRK08978 261 QECDLLIAVGARFDDRVT--G-KLNT-F-APHAKVIHLDIDP 297 (548)
T ss_pred HhCCEEEEEcCCCCcccc--C-Cccc-c-CCCCeEEEEECCH
Confidence 799999999987543211 1 1111 1 1356899998754
No 161
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=74.79 E-value=0.89 Score=45.20 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=28.1
Q ss_pred CcccccccccccccCccccccccc--c-cccccceeeeeeeccCCCCCcEEE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAF--K-ARNWELKGTETIDVTDAVGSNIRI 83 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~--~-aR~Wel~~~~siC~~C~~gC~i~v 83 (523)
.|.-||.|+++||+||+.- .+.. + ...++ .....-|..|...|...+
T Consensus 49 ~C~~C~~C~~~Cp~~a~~~-~~~~~~~~~~~~~-~~~C~~Cg~C~~~CP~~A 98 (295)
T TIGR02494 49 RCLGCGKCVEVCPAGTARL-SELADGRNRIIIR-REKCTHCGKCTEACPSGA 98 (295)
T ss_pred cCCCCchhhhhCccccccc-ccccCCCcceeec-hhhcCchhHhhccCcHhH
Confidence 5778999999999999861 1111 1 12222 223345666777786543
No 162
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=74.53 E-value=1.2 Score=31.33 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=6.1
Q ss_pred ccccccccccccc
Q 009859 36 SELSGNVIDICPV 48 (523)
Q Consensus 36 ~~~~Gn~idvCPv 48 (523)
+..||.|+.+||+
T Consensus 9 C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 9 CIGCGRCVKVCPA 21 (52)
T ss_dssp -----TTGGG-TT
T ss_pred CcCCcChHHHccc
Confidence 5567888888888
No 163
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=74.43 E-value=1.1 Score=36.87 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=17.3
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|..||.|+++||++||+-.
T Consensus 54 ~C~~C~~C~~~CP~~AI~~~ 73 (103)
T PRK09626 54 SCIGCRECELHCPDFAIYVA 73 (103)
T ss_pred cCCCcCcchhhCChhhEEEe
Confidence 57789999999999999744
No 164
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=74.38 E-value=9.2 Score=41.90 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 212 (523)
.++++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+.+...-. .....+|.....+. ....+
T Consensus 194 ~~~~~~~~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~ 271 (572)
T PRK06456 194 RLALKKAAEILINAE--RPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAA 271 (572)
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHH
Confidence 467888888888763 5556666432 112345688999999998764433211 11122222112221 12346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|+...... .... .. ....+.+++.||...
T Consensus 272 ~~aDlvl~lG~~~~~~~-~~~~--~~-~~~~~~~~i~id~d~ 309 (572)
T PRK06456 272 LESDAMLVVGARFSDRT-FTSY--DE-MVETRKKFIMVNIDP 309 (572)
T ss_pred HhCCEEEEECCCCchhh-cccc--cc-ccCCCCeEEEEeCCh
Confidence 89999999998753321 1111 11 111356899988643
No 165
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=74.19 E-value=9.8 Score=41.62 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~d 211 (523)
-+++++.+++.|.+.+ +..++.|.... ......+.+|++.+|.+.+.+..... .....+|.....+. .-.-
T Consensus 189 ~~~~i~~~~~~L~~A~--rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~ 266 (563)
T PRK08527 189 NSRQIKKAAEAIKEAK--KPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMA 266 (563)
T ss_pred CHHHHHHHHHHHHcCC--CCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHH
Confidence 3678899999998763 55666654322 12345688999999988764433221 11112222111111 1235
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+++||+||++|+...+-.... ... . ....++|.||..
T Consensus 267 l~~aD~vl~lG~~l~~~~~~~---~~~-~-~~~~~~i~id~d 303 (563)
T PRK08527 267 MSECDLLISLGARFDDRVTGK---LSE-F-AKHAKIIHVDID 303 (563)
T ss_pred HHhCCEEEEeCCCCCccccCC---hhh-c-CCCCeEEEEECC
Confidence 689999999998764422111 111 1 135689998865
No 166
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=74.09 E-value=8.7 Score=42.19 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCC--Ccccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di 212 (523)
-+++++.+++.|+..+ +..++.|.... .....+.+|++.+|.+.+.+.... + .+...+|.....+. ...-+
T Consensus 187 ~~~~i~~a~~~L~~A~--rPvii~G~g~~-~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l 263 (578)
T PRK06546 187 DPAEVRALADAINEAK--KVTLFAGAGVR-GAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHEAM 263 (578)
T ss_pred CHHHHHHHHHHHHcCC--CcEEEECcchH-HHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHHHHHH
Confidence 3678999999999763 55666665432 334568899999998876443211 1 11122222212221 12357
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++||+||++|++.... . .. ...++|.||...
T Consensus 264 ~~aDlvl~lG~~~~~~---------~-~~-~~~~~I~vd~d~ 294 (578)
T PRK06546 264 HEADLLILLGTDFPYD---------Q-FL-PDVRTAQVDIDP 294 (578)
T ss_pred HhCCEEEEEcCCCChh---------h-cC-CCCcEEEEeCCH
Confidence 8999999999875321 1 11 346899998644
No 167
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=74.02 E-value=5.2 Score=38.00 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=31.6
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
.++++++|++|++|+..... |. ..+-..++++|+++++|++..+.
T Consensus 166 ~~~~~~~Dl~lvvGTSl~V~-p~--~~l~~~a~~~g~~~i~iN~~~~~ 210 (222)
T cd01413 166 IEAAKEADLFIVLGSSLVVY-PA--NLLPLIAKENGAKLVIVNADETP 210 (222)
T ss_pred HHHHhcCCEEEEEccCCEec-cH--hHHHHHHHHcCCeEEEEcCCCCC
Confidence 35667899999999986553 32 22333334589999999987654
No 168
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=72.95 E-value=13 Score=41.15 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 212 (523)
.+.++.+++.|.+.+ +..++.|.... .+....+.+|++.+|.+.+.+..... .+....|.....+. ...-+
T Consensus 218 ~~~i~~~~~~L~~Ak--rPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l 295 (612)
T PRK07789 218 GKQIREAAKLIAAAR--RPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAAL 295 (612)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHH
Confidence 567888889888763 56666665432 23455688999999998765433221 11112221111111 12456
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||++|+....... ..... .. ...++|.||...
T Consensus 296 ~~aDlvL~lG~~l~~~~t---~~~~~-~~-~~~~~i~Id~d~ 332 (612)
T PRK07789 296 QRSDLLIALGARFDDRVT---GKLDS-FA-PDAKVIHADIDP 332 (612)
T ss_pred HhCCEEEEECCCCCcccc---CChhh-cC-CCCcEEEEECCH
Confidence 799999999987543211 01111 11 457899988753
No 169
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=72.89 E-value=1.5 Score=40.22 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=22.0
Q ss_pred cCccccc------ccccccccCccccccccccccccc
Q 009859 34 MTSELSG------NVIDICPVGALTSKPFAFKARNWE 64 (523)
Q Consensus 34 ~~~~~~G------n~idvCPvGAlt~k~~~~~aR~We 64 (523)
-.|.+|| .|+++||+|||+-.+ +...++|+
T Consensus 129 ~kC~~C~~~~~~paCv~~CP~~Al~~~~-~~~~~~~~ 164 (181)
T PRK10330 129 NKCDLCNHREDGPACMAACPTHALICVD-RNKLEQLS 164 (181)
T ss_pred eeCcCCCCCCCCccchhhCchhhEEEeC-HHHHHHHH
Confidence 3588998 899999999998655 23344444
No 170
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.82 E-value=14 Score=40.52 Aligned_cols=108 Identities=19% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 212 (523)
+++++.+++.|.+.+ +..++.|.... .+....+.+|++.+|.+.+.+...-. .....+|.....+. ...-+
T Consensus 193 ~~~i~~~~~~l~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l 270 (574)
T PRK06882 193 KGQIKKALKALLVAK--KPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAM 270 (574)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHH
Confidence 577888999888763 55556664322 22345688999999998765433221 11122222111111 12356
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||++|+.......... .. . ....++|.||...
T Consensus 271 ~~aDlvl~lG~~~~~~~~~~~---~~-~-~~~~~~I~id~d~ 307 (574)
T PRK06882 271 HESDLILGIGVRFDDRTTNNL---AK-Y-CPNAKVIHIDIDP 307 (574)
T ss_pred HhCCEEEEECCCCCccccCch---hh-c-CCCCeEEEEECCH
Confidence 799999999987544321111 11 1 2456899998643
No 171
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=72.80 E-value=14 Score=40.43 Aligned_cols=108 Identities=15% Similarity=0.040 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di 212 (523)
++.++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+.+...- + .....+|..+..+. ...-+
T Consensus 202 ~~~i~~~~~~L~~A~--rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l 279 (571)
T PRK07710 202 LLQIRKLVQAVSVAK--KPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMAL 279 (571)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHH
Confidence 356888899888763 5555666432 22334568899999998876443221 1 11111222111121 12346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||.+|+........ .... .. ...+++.||...
T Consensus 280 ~~aDlvL~lG~~~~~~~~~---~~~~-~~-~~~~~i~id~d~ 316 (571)
T PRK07710 280 YECDLLINIGARFDDRVTG---NLAY-FA-KEATVAHIDIDP 316 (571)
T ss_pred HhCCEEEEeCCCCCccccC---chhh-cC-CCCeEEEEECCH
Confidence 7999999999876443211 1111 11 356788888653
No 172
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=72.65 E-value=1.4 Score=43.00 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.0
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
+|.-||-|+.+|||||++..
T Consensus 194 kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 194 KCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred cccccchhhhhCCCcceecc
Confidence 57789999999999999876
No 173
>PRK06273 ferredoxin; Provisional
Probab=72.62 E-value=1.3 Score=40.00 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.9
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||+||+.-.
T Consensus 50 ~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 50 LCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred hCcChhHHHHhcCccceeee
Confidence 36679999999999998744
No 174
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=72.44 E-value=1.7 Score=42.32 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=9.0
Q ss_pred cccccccccCccccc
Q 009859 40 GNVIDICPVGALTSK 54 (523)
Q Consensus 40 Gn~idvCPvGAlt~k 54 (523)
+=|..+||.||+.+.
T Consensus 172 ~~C~~~CP~Ga~~~~ 186 (255)
T TIGR02163 172 GWCGHLCPLGAFYGL 186 (255)
T ss_pred chhhCcCCCcchhhh
Confidence 445566666666554
No 175
>PRK09898 hypothetical protein; Provisional
Probab=72.04 E-value=1.5 Score=41.17 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=16.7
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||.||+.-.
T Consensus 155 ~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 155 RCIGCSACTTACPWMMATVN 174 (208)
T ss_pred cCCCcCcccccCCCCCCEec
Confidence 35679999999999999854
No 176
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=72.02 E-value=3.3 Score=35.80 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=26.7
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGN 319 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g 319 (523)
|.++++.|.+|++|+|++|.+..++....+ +..|+..+|
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~----l~~lae~~~ 39 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEE----LRELAEKLG 39 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHH----HHHHHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHH----HHHHHHHHC
Confidence 467899999999999999999876644444 444555544
No 177
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=71.84 E-value=11 Score=41.12 Aligned_cols=109 Identities=19% Similarity=0.052 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCCC--ccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNTS--ISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~~--~~d 211 (523)
.+++++.+++.|.+.+ +..++.|.... ......+.+|++.+|.+.+.+...- + .....+|.....+.. -.-
T Consensus 187 ~~~~i~~~~~~L~~Ak--rPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~ 264 (558)
T TIGR00118 187 HPLQIKKAAELINLAK--KPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLA 264 (558)
T ss_pred CHHHHHHHHHHHHhCC--CcEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHH
Confidence 3567888999998763 56666664321 1234568999999999877543221 1 111122221111111 234
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||++|+......... ... . ....+++.||...
T Consensus 265 l~~aD~vl~lG~~~~~~~~~~---~~~-~-~~~~~~i~id~d~ 302 (558)
T TIGR00118 265 VHECDLIIAVGARFDDRVTGN---LAK-F-APNAKIIHIDIDP 302 (558)
T ss_pred HHhCCEEEEECCCCCccccCc---hhh-c-CCCCcEEEEeCCH
Confidence 679999999998864422111 111 1 1356899998754
No 178
>PRK11269 glyoxylate carboligase; Provisional
Probab=71.12 E-value=18 Score=39.74 Aligned_cols=108 Identities=13% Similarity=-0.015 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcCccc-CCC--cc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIM-NTS--IS 210 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~~~~-~~~--~~ 210 (523)
-.+.++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+...-. .+....|..... +.. ..
T Consensus 189 ~~~~i~~~~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~ 266 (591)
T PRK11269 189 TRAQIEKALEMLNAAE--RPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNA 266 (591)
T ss_pred CHHHHHHHHHHHHhCC--CcEEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHH
Confidence 4577888999888764 5556666432 223445688999999998774432211 112222221111 111 13
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
-++++|+||++|+............ . ..+.++|.||..
T Consensus 267 ~~~~aDlvl~lG~~~~~~~~~~~~~----~-~~~~~~i~Vd~d 304 (591)
T PRK11269 267 TLLASDFVLGIGNRWANRHTGSVEV----Y-TKGRKFVHVDIE 304 (591)
T ss_pred HHHhCCEEEEeCCCCCccccCchhh----c-CCCCeEEEeeCC
Confidence 4789999999998755432211111 1 246789999864
No 179
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=70.35 E-value=10 Score=41.60 Aligned_cols=109 Identities=19% Similarity=0.058 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCC-CcHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCccc-C------
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRL-SDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIM-N------ 206 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~-~~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~-~------ 206 (523)
-+++++.+++.|.+.+ +..++.|.. ...+....+.+|++.+|.+.+.+...- + .+....|..... +
T Consensus 199 ~~~~i~~~~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~ 276 (578)
T PRK06112 199 APQRLAEAASLLAQAQ--RPVVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGR 276 (578)
T ss_pred CHHHHHHHHHHHHcCC--CcEEEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchH
Confidence 3577888888888753 555566533 222334568999999999876543321 1 111112211111 1
Q ss_pred CCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 207 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 207 ~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
....-++++|+||++|+.+...... .. .. . ....++|.||+..
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~-~~--~~-~-~~~~~~i~id~d~ 319 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTD-SW--SL-Y-PEQAQYIHIDVDG 319 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccc-cc--cc-c-CCCCeEEEEECCh
Confidence 0123467999999999876543211 11 11 1 2457899998754
No 180
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=70.09 E-value=6.5 Score=38.58 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
..+++||++|++|+..... |.. ++-..++++|++|+.|++..+.
T Consensus 195 ~~~~~aDlllviGTSl~V~-pa~--~l~~~a~~~g~~vi~IN~~~t~ 238 (271)
T PTZ00409 195 KEIDKCDLLLVVGTSSSVS-TAT--NLCYRAHRKKKKIVEVNISKTY 238 (271)
T ss_pred HHHHcCCEEEEECCCCccc-CHH--HHHHHHHHcCCCEEEECCCCCC
Confidence 4567999999999987653 322 2333334589999999998765
No 181
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=69.23 E-value=7.3 Score=37.98 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=32.6
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCc
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 258 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~ 258 (523)
..++++||++|++|+..... |. +.-+..+ +++|++++.|++..+..-
T Consensus 199 ~~~~~~aDlllviGTSl~V~-pa-~~l~~~a-~~~g~~viiIN~~~t~~d 245 (260)
T cd01409 199 AARLAEADALLVLGSSLMVY-SG-YRFVLAA-AEAGLPIAIVNIGPTRAD 245 (260)
T ss_pred HHHHhcCCEEEEeCcCceec-ch-hhHHHHH-HHCCCcEEEEcCCCCCCC
Confidence 35667899999999986553 32 2223334 358999999999776543
No 182
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=69.18 E-value=1.9 Score=39.08 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=29.4
Q ss_pred cccccccccccccCcccccccccc----cccccceeeeeeecc---CCCCCcEEE
Q 009859 36 SELSGNVIDICPVGALTSKPFAFK----ARNWELKGTETIDVT---DAVGSNIRI 83 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~----aR~Wel~~~~siC~~---C~~gC~i~v 83 (523)
|--|+-|..+||++|++=-+..-+ -+++--+.-.+-|.+ |-.-|....
T Consensus 57 CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 57 CIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred CcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhh
Confidence 667899999999999986653222 133333333444544 445676544
No 183
>PLN02573 pyruvate decarboxylase
Probab=68.93 E-value=12 Score=40.99 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcC-cccCCC--cc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSG-YIMNTS--IS 210 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~-~~~~~~--~~ 210 (523)
.+.+++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+.+...-.. +...+|.. ...+.. ..
T Consensus 210 ~~~~~~~a~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~ 287 (578)
T PLN02573 210 LEAAVEAAAEFLNKAV--KPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAE 287 (578)
T ss_pred HHHHHHHHHHHHHhCC--CCEEEEChhhcccchHHHHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHH
Confidence 4678999999999874 4555555422 1233456899999999987644332111 11222221 111211 23
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
-+++||+||++|+...+-... .... .....++|.||....
T Consensus 288 ~~~~aDlvl~lG~~l~~~~~~-~~~~----~~~~~~~I~id~d~~ 327 (578)
T PLN02573 288 IVESADAYLFAGPIFNDYSSV-GYSL----LLKKEKAIIVQPDRV 327 (578)
T ss_pred HHHhCCEEEEECCccCCcccc-cccc----cCCCCcEEEEeCCEE
Confidence 568999999999764332211 1100 124578999987543
No 184
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=68.83 E-value=2.7 Score=30.70 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=11.9
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
+--||.|+.+||.||+..-.
T Consensus 8 Ci~Cg~C~~~Cp~~~~~~i~ 27 (59)
T PF14697_consen 8 CIGCGKCVRACPDGAIDAIE 27 (59)
T ss_dssp ----SCCCHHCCCCS-S-EC
T ss_pred ccChhhHHhHcCccceeeEE
Confidence 45689999999987766554
No 185
>PRK07118 ferredoxin; Validated
Probab=68.67 E-value=1.6 Score=43.07 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=28.6
Q ss_pred CcccccccccccccCcccccccccccccccceee
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGT 68 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~ 68 (523)
.+..||.|++.||++|+.-.....+.+.|+....
T Consensus 243 ~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~~~~~~ 276 (280)
T PRK07118 243 KCTSCGKCVEKCPTKAIRILNKPPKVKEPKKAAA 276 (280)
T ss_pred cCCCHHHHHHhCCccccEeecccccccccCCccc
Confidence 4667899999999999999988888888876544
No 186
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=68.53 E-value=22 Score=38.90 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc---cc-hhhhhhcCc-ccCC--Cccccc
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---AQ-SNADLRSGY-IMNT--SISGLE 213 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~---~~-~~~~~~~~~-~~~~--~~~di~ 213 (523)
.+++.+++.|++ ++..++.|..... ....+.+|++.+|.+.+...... +. +...+|... ..+. ....++
T Consensus 210 ~~~~~~~~~l~~---krPvii~G~g~~~-~~~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~ 285 (568)
T PRK07449 210 VTSQRDWDIWRQ---KRGVVIAGRLSAE-EGQAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELL 285 (568)
T ss_pred ccchhhhhhhcc---CCeEEEECCCChH-HHHHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcC
Confidence 456777777765 3566666654432 22678999999998876333221 10 111122110 0011 224578
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||.+|+....... ..... ....+++.||...
T Consensus 286 ~aD~vl~vG~~l~~~~~--~~~~~----~~~~~~i~id~d~ 320 (568)
T PRK07449 286 QPDIVIQFGSPPTSKRL--LQWLA----DCEPEYWVVDPGP 320 (568)
T ss_pred CCCEEEEeCCCCCchhH--HHHHh----cCCCCEEEECCCC
Confidence 99999999988644321 11111 1233899998744
No 187
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=68.45 E-value=1.8 Score=43.05 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=9.1
Q ss_pred EcCHHHHHHHHHHH
Q 009859 136 AVNWRDALAVVAEV 149 (523)
Q Consensus 136 ~isWdeAl~~ia~~ 149 (523)
+.++++.++.+.+.
T Consensus 105 ~~t~eel~~~i~~~ 118 (295)
T TIGR02494 105 EMTVEEVMRVVLRD 118 (295)
T ss_pred CCcHHHHHHHHHHH
Confidence 45677777766654
No 188
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=68.24 E-value=20 Score=39.02 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Cccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di~ 213 (523)
..+++.+++.|++. ++..++.|.... .....+.+|++.+|.+.+.+...-.. ....+|.....+. ...-++
T Consensus 182 ~~~i~~~~~~L~~A--krPvii~G~g~~-~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~ 258 (549)
T PRK06457 182 SIDFSRAKELIKES--EKPVLLIGGGTR-GLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMD 258 (549)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECcchh-hHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHH
Confidence 35678888888865 356666665432 23356789999999987644322111 1112222111121 124567
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||.+|+...... ....+.+++.||...
T Consensus 259 ~aDlvl~lG~~~~~~~----------~~~~~~~ii~id~d~ 289 (549)
T PRK06457 259 KADLLIMLGTSFPYVN----------FLNKSAKVIQVDIDN 289 (549)
T ss_pred hCCEEEEECCCCChhh----------cCCCCCcEEEEeCCH
Confidence 9999999998643211 112367899998754
No 189
>PRK07524 hypothetical protein; Provisional
Probab=68.00 E-value=12 Score=40.58 Aligned_cols=110 Identities=18% Similarity=0.055 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCCcccccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTSISGLEK 214 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~di~~ 214 (523)
-.+.++.+++.|++.+ +..++.|.... .....+.+|++.+|.+.+.+...-.. +...+|.........+-+++
T Consensus 187 ~~~~i~~~~~~L~~Ak--rPvil~G~g~~-~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~ 263 (535)
T PRK07524 187 APAALAQAAERLAAAR--RPLILAGGGAL-AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAE 263 (535)
T ss_pred CHHHHHHHHHHHHhCC--CcEEEECCChH-HHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCHHHHHHHHh
Confidence 3577888899998763 56666665442 34456889999999887654322111 11122221100011233679
Q ss_pred CCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 215 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 215 ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
||+||++|+......... ..... . ..+.+++.||...
T Consensus 264 aDlvl~vG~~~~~~~~~~-~~~~~-~-~~~~~~i~id~d~ 300 (535)
T PRK07524 264 ADVVLAVGTELGETDYDV-YFDGG-F-PLPGELIRIDIDP 300 (535)
T ss_pred CCEEEEeCCCcCcccccc-ccccc-c-CCCCCEEEEECCH
Confidence 999999998753321100 00001 1 2457899998754
No 190
>PRK06154 hypothetical protein; Provisional
Probab=67.95 E-value=13 Score=40.57 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--ccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~d 211 (523)
-++.++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+...-.. +....|.....+.. ..-
T Consensus 200 ~~~~i~~aa~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~ 277 (565)
T PRK06154 200 DPVEVVEAAALLLAAE--RPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHF 277 (565)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHH
Confidence 4678999999998764 5555665432 1234456889999999987754332211 11122221111111 134
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++||+||++|+...... ... .. ..+.++|.||...
T Consensus 278 ~~~aDlvL~lG~~l~~~~--~~~----~~-~~~~~vI~id~d~ 313 (565)
T PRK06154 278 LREADVLFGIGCSLTRSY--YGL----PM-PEGKTIIHSTLDD 313 (565)
T ss_pred HHhCCEEEEECCCCcccc--cCc----cC-CCCCeEEEEECCH
Confidence 789999999998865421 110 11 2467999888644
No 191
>CHL00065 psaC photosystem I subunit VII
Probab=67.88 E-value=2.2 Score=33.34 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.6
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||.|+++||+++++-.+
T Consensus 10 ~Ci~Cg~C~~~CP~~~i~~~~ 30 (81)
T CHL00065 10 TCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCCChhHHHHHCCccchhhee
Confidence 467799999999999987654
No 192
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=67.88 E-value=2.5 Score=38.02 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.3
Q ss_pred CcCcccccccccccccCcccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
...|.+||+|+++||+|||+...
T Consensus 96 ~~~C~~Cg~Cv~~CP~~Ai~~~~ 118 (164)
T PRK05888 96 FGRCIFCGFCEEACPTDAIVETP 118 (164)
T ss_pred CCcCcccCcchhhcCcCcceecC
Confidence 34688999999999999997665
No 193
>PRK10194 ferredoxin-type protein; Provisional
Probab=67.87 E-value=2 Score=38.60 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=8.5
Q ss_pred ccccccccccccCccc
Q 009859 37 ELSGNVIDICPVGALT 52 (523)
Q Consensus 37 ~~~Gn~idvCPvGAlt 52 (523)
..|+.|+++||+||+.
T Consensus 107 ~~C~~C~~~CP~~Ai~ 122 (163)
T PRK10194 107 VECRRCQDSCEPMAII 122 (163)
T ss_pred CCcCcchhhCCHhHeE
Confidence 3455555555555554
No 194
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=67.85 E-value=1.8 Score=41.51 Aligned_cols=44 Identities=18% Similarity=0.035 Sum_probs=26.5
Q ss_pred CcccccccccccccCcccccccccccccccceeeeeeeccCCCCCcEE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIR 82 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~ 82 (523)
.|..||.|+++||+||+....-.....+ ..- .-|..|...|...
T Consensus 149 ~C~~C~~C~~~CP~~ai~~~~~~~~i~~--~~C--~~Cg~C~~~CP~~ 192 (234)
T TIGR02700 149 RCKGCGICVDACPRSAIDMVDGKAFIRL--LKC--VGCGKCKEACPYN 192 (234)
T ss_pred HCcCcchHHHhCCcccEEecCCceEEch--hhC--CccchHHhhCCCC
Confidence 4778999999999999865432211112 111 2466676667543
No 195
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=67.85 E-value=35 Score=34.01 Aligned_cols=128 Identities=14% Similarity=0.158 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeE
Q 009859 168 AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKV 247 (523)
Q Consensus 168 ~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~kl 247 (523)
++..-.+.++++..|+.-++.+...-.+. .. ..| ...+.+ ++.++++|.+-.-.---....+++++++.|.+.
T Consensus 108 ls~dp~~~k~A~~~G~rl~dvR~p~~~l~--~~---~tG-~~~k~~-a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a 180 (339)
T COG3367 108 LSDDPEFVKLAERTGVRLDDVRKPPLDLE--YL---CTG-MARKVD-AKVVLVVGTDCAVGKRTTALELREAAREEGIKA 180 (339)
T ss_pred hhcChHHHHHHHHcCCeeEeeccCccchh--hh---ccC-cccccC-CcEEEEeccccccchhHHHHHHHHHHHHhCCcc
Confidence 44555678888888886555543321111 11 112 234443 999999999976655445566888888899988
Q ss_pred EEEcCCCCCCcchhccCCCH-HHHHHHHcC-cHHHHHHHhcCCCcEE-EEcCCcccccC
Q 009859 248 GYIGPATDLNYDHQHLGTGP-KTLLEIAEG-RHPFFSAISNAKNPVI-IVGAGLFERKD 303 (523)
Q Consensus 248 v~idp~~~~t~~~a~~g~~~-~~l~~~~~g-i~~~a~~l~~a~~~~i-i~g~~~~~~~~ 303 (523)
..+..-.+.-.- ++-|.-. ....++++| ++.+...+.+..+-+| |=|++...||-
T Consensus 181 ~fvaTgqtgil~-~~~gvvvdav~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~ 238 (339)
T COG3367 181 GFVATGQTGILI-ADDGVVVDAVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPA 238 (339)
T ss_pred ceEecCceeeEE-ecCceEecchhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCC
Confidence 888765443222 2211111 113444445 3333333334223344 44777666653
No 196
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=67.42 E-value=1.5 Score=50.73 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=33.2
Q ss_pred cccccccccccCcccccc-ccccc----ccccceeeeeeeccCCCCCcEEEEEECCEEEEEec
Q 009859 38 LSGNVIDICPVGALTSKP-FAFKA----RNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILP 95 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~k~-~~~~a----R~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~ 95 (523)
-||.|+++||+||+.+.. ..+.. -.++ ....-|.+|..-|....-.-.|++.-+.-
T Consensus 889 ~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d--~~C~~CG~C~~vCP~~a~~~~gk~~~~~k 949 (1012)
T TIGR03315 889 VCEKCVDVCPNRANIVIYVPGFRDQFQIVHLD--GMCNECGNCATFCPYDGAPYKDKLTLFWL 949 (1012)
T ss_pred CCCChhhhCChhhhhccccccccCCceeeecC--ccccccchHHHhCCCCcccceeeeeeecc
Confidence 499999999999974321 01110 1122 23566677778887765555566544443
No 197
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=67.37 E-value=13 Score=40.80 Aligned_cols=112 Identities=18% Similarity=0.105 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCC--Cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~d 211 (523)
-.++++.+++.|++. ++..++.|... ..+....+.+|++.+|.+.+.+.... + .....+|.....+. ...-
T Consensus 182 ~~~~i~~~~~~L~~A--~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~ 259 (579)
T TIGR03457 182 GATSLAQAARLLAEA--KFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKL 259 (579)
T ss_pred CHHHHHHHHHHHHhC--CCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHH
Confidence 357899999999876 35556665432 22334568999999998876442221 1 11122222111121 1234
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||++|+............. . ....++++|.||...
T Consensus 260 l~~aDlil~lG~~~~~~~~~~~~~~-~-~~~~~~~~I~id~d~ 300 (579)
T TIGR03457 260 ISDADVVLALGTRLGPFGTLPQYGI-D-YWPKNAKIIQVDANA 300 (579)
T ss_pred HHhCCEEEEECCCCccccccccccc-c-cCCCCCeEEEEeCCH
Confidence 7899999999987542110000000 0 112468999998744
No 198
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=67.34 E-value=1.6 Score=43.82 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=15.9
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
|.-|.-|+|.||+|||....
T Consensus 187 Cg~C~~CldaCPt~Al~~~~ 206 (337)
T COG1600 187 CGSCTRCLDACPTGALVAPY 206 (337)
T ss_pred ChhhHHHHhhCCcccccCCC
Confidence 34566899999999997665
No 199
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=67.17 E-value=8.7 Score=37.05 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=33.0
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchh
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQ 261 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a 261 (523)
.++++||++|++|+..... |. ..+...++++|++|++|++..+..-..+
T Consensus 174 ~~~~~aDl~lviGTSl~V~-pa--~~l~~~~~~~g~~~i~iN~~~t~~d~~~ 222 (244)
T PRK14138 174 RLSSKASLMIVMGSSLVVY-PA--AELPLITVRSGGKLVIVNLGETPLDDIA 222 (244)
T ss_pred HHHhcCCEEEEeCcCCeee-cH--hHHHHHHHHcCCeEEEEcCCCCCCCcce
Confidence 5567999999999976553 42 2333223458999999999766543333
No 200
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=67.14 E-value=15 Score=35.35 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.6
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
++++|++|++|+..... |. ..-...+ +++|++|+.|++..+.
T Consensus 170 ~~~~DlllviGTSl~V~-pa-~~l~~~a-~~~g~~vi~IN~~~~~ 211 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVY-PA-AGFVGRA-QFYGATTLELNLEEGT 211 (242)
T ss_pred HHhCCEEEEEccCCccc-cH-HHHHHHH-HHcCCeEEEECCCCCC
Confidence 57899999999976553 33 2223333 4589999999997644
No 201
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=67.08 E-value=2.1 Score=43.51 Aligned_cols=48 Identities=15% Similarity=-0.042 Sum_probs=28.0
Q ss_pred cccccccccccccCcccccc-cccccccccceeeeeeeccCCCCCcEEEE
Q 009859 36 SELSGNVIDICPVGALTSKP-FAFKARNWELKGTETIDVTDAVGSNIRID 84 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~-~~~~aR~Wel~~~~siC~~C~~gC~i~v~ 84 (523)
+.-+|.|+++||++||+-.. .......++ .....-|.+|...|.....
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id-~~~Ci~Cg~Ci~~CP~~a~ 231 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSLEVD-VEKCIYCGNCYTMCPAMPI 231 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCceeec-cccCCcCCchHHhCchhhc
Confidence 34578999999999998632 111112222 1333455666677876543
No 202
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=66.95 E-value=17 Score=37.13 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=37.1
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
.+.+.++++|.||... ++.++..-+|++|+..++|+..||..+|....
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~i~pg 211 (374)
T cd00368 155 ENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLPIRPG 211 (374)
T ss_pred hhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeCCCCC
Confidence 4679999999998531 12223456899999999999999999997743
No 203
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=66.75 E-value=2 Score=34.30 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.8
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||++|+...
T Consensus 23 Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 23 CIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred CCCcchHHHHcChhhceee
Confidence 6679999999999999765
No 204
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=66.34 E-value=2.1 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=16.3
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.+||.|+++||+|||+-.+
T Consensus 74 ~C~~Cg~C~~vCP~~AI~~~~ 94 (180)
T PRK12387 74 RCIFCGRCEEVCPTAAIKLSQ 94 (180)
T ss_pred cCcCccchhhhcCcCceEccC
Confidence 467888888888888887543
No 205
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=66.04 E-value=2.5 Score=43.83 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=14.0
Q ss_pred cccccccccccCccccc
Q 009859 38 LSGNVIDICPVGALTSK 54 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~k 54 (523)
....||++||++|++-.
T Consensus 246 ~~~~~v~~Cp~~ai~~~ 262 (402)
T TIGR02064 246 IENEVVNRCPTKAISWD 262 (402)
T ss_pred cchhHhhcCCccccccC
Confidence 45679999999999754
No 206
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=65.42 E-value=18 Score=39.65 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCC--Cccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di~ 213 (523)
+++++.+++.|++.+ +..++.|.... +....+.+|++.+|.+.+.+...- + .....+|..+..+. ...-++
T Consensus 188 ~~~i~~~~~~L~~Ak--rPvii~G~g~~-~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~ 264 (574)
T PRK09124 188 EEELRKLAALLNGSS--NITLLCGSGCA-GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMM 264 (574)
T ss_pred HHHHHHHHHHHHcCC--CCEEEECcChH-hHHHHHHHHHHHhCCceEEcccccccCCCCCcccccCCccCCCHHHHHHHH
Confidence 578899999998763 55566665432 334567899999998876543221 1 11122222111121 124568
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||.+|+..... ... ....+++.||...
T Consensus 265 ~aDlvl~lG~~~~~~---------~~~-~~~~~ii~id~d~ 295 (574)
T PRK09124 265 NCDTLLMLGTDFPYR---------QFY-PTDAKIIQIDINP 295 (574)
T ss_pred hCCEEEEECCCCCcc---------ccc-CCCCcEEEeeCCH
Confidence 999999999865321 011 1346899998754
No 207
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=64.68 E-value=2.7 Score=39.62 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.7
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+.+||++||.-.+
T Consensus 54 ~Ci~Cg~Cv~aCP~~ai~~~~ 74 (213)
T TIGR00397 54 ACVRCGLCVEACPYDILSLAS 74 (213)
T ss_pred cccchhHHHHhCCcccccccc
Confidence 367899999999999997644
No 208
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=64.64 E-value=16 Score=40.14 Aligned_cols=112 Identities=17% Similarity=0.084 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc---c-chhhhhhcCcccCC--Cccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~d 211 (523)
-+++++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+...- + .....+|.....+. ..+-
T Consensus 186 ~~~~i~~a~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~ 263 (588)
T PRK07525 186 GEQSLAEAAELLSEAK--FPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMEL 263 (588)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHH
Confidence 4688999999998763 5556666432 22344567899999998876542221 1 11122221111111 1234
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++||+||++|+............. .. .....++|.||...
T Consensus 264 ~~~aDlvl~lG~~l~~~~~~~~~~~-~~-~~~~~~iI~Id~d~ 304 (588)
T PRK07525 264 IAKADVVLALGTRLNPFGTLPQYGI-DY-WPKDAKIIQVDINP 304 (588)
T ss_pred HHhCCEEEEECCCCchhhccccccc-cc-CCCCCeEEEEECCH
Confidence 6899999999987543211000000 00 12468999998754
No 209
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=64.37 E-value=2.1 Score=47.61 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.7
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
|--||.|+++||++.+....
T Consensus 372 CI~CG~Cv~aCP~~llP~~l 391 (695)
T PRK05035 372 CIRCGACADACPASLLPQQL 391 (695)
T ss_pred cCCcccHHHHCCccchhhhH
Confidence 66799999999999996543
No 210
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=64.32 E-value=2.8 Score=37.86 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=15.9
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.|..||.|+++||++||.-
T Consensus 100 ~C~~Cg~C~~~CP~~AI~~ 118 (167)
T CHL00014 100 VCIFCGNCVEYCPTNCLSM 118 (167)
T ss_pred cCcCccchHhhcCcCceec
Confidence 4778999999999999854
No 211
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=64.32 E-value=2.4 Score=32.11 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=14.2
Q ss_pred cCcccccccccccccCc
Q 009859 34 MTSELSGNVIDICPVGA 50 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGA 50 (523)
..|.=||.|+++||+|-
T Consensus 50 ~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 50 GDCVGCGRCVRVCPAGI 66 (69)
T ss_pred ccCCCcChHhhhcCCCC
Confidence 35677999999999983
No 212
>PRK08611 pyruvate oxidase; Provisional
Probab=63.86 E-value=19 Score=39.57 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Cccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di~ 213 (523)
++.++.+++.|++.+ +..++.|.... .....+.+|++.+|.+.+.+...-.. ....+|....++. ...-++
T Consensus 190 ~~~i~~~~~~L~~Ak--rPvil~G~g~~-~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~ 266 (576)
T PRK08611 190 PKDIKKAAKLINKAK--KPVILAGLGAK-HAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQ 266 (576)
T ss_pred HHHHHHHHHHHHcCC--CcEEEECcCcc-hHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHHHHHHHH
Confidence 467888888888653 55566665432 23456889999999987754322111 1112222111121 123478
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||++|+...... + .....+++.||...
T Consensus 267 ~aDlvl~iG~~~~~~~-----~-----~~~~~~~i~id~d~ 297 (576)
T PRK08611 267 EADLLIMVGTNYPYVD-----Y-----LPKKAKAIQIDTDP 297 (576)
T ss_pred hCCEEEEeCCCCCccc-----c-----CCCCCcEEEEeCCH
Confidence 9999999998642111 0 11347899998754
No 213
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=62.56 E-value=4.5 Score=38.49 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=17.6
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+++||.||+.-.+
T Consensus 126 ~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 126 LCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred hCCcchHHHHhCCCCCcEecC
Confidence 367799999999999997554
No 214
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=62.32 E-value=18 Score=42.41 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=37.0
Q ss_pred ccCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCC
Q 009859 353 IESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
-.+.+.++++|+||... ++.++..-||++|+..+.|+..||+.||...
T Consensus 219 i~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~irP 275 (1009)
T TIGR01553 219 IKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIRS 275 (1009)
T ss_pred HHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCCC
Confidence 35679999999998531 1223444688889999999999999999873
No 215
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=62.19 E-value=13 Score=40.38 Aligned_cols=108 Identities=14% Similarity=-0.019 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhc-CcccCC--Cccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRS-GYIMNT--SISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~-~~~~~~--~~~d 211 (523)
+++++.+++.|++.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. +...+|. ....+. ...-
T Consensus 188 ~~~v~~~~~~l~~Ak--rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~ 265 (535)
T TIGR03394 188 DACADEVLARMRSAT--SPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRL 265 (535)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCCCHHHHHH
Confidence 577888999998864 55555554321 123456889999999988755433211 1222231 111121 1234
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++||+||.+|+.+.......... . ....++|.||...
T Consensus 266 l~~aDliL~iG~~l~~~~~~~~~~----~-~~~~~~I~id~~~ 303 (535)
T TIGR03394 266 VEESDGLLLLGVILSDTNFAVSQR----K-IDLRRTIHAFDRA 303 (535)
T ss_pred HHhCCEEEEECCcccccccccccc----c-CCCCcEEEEeCCE
Confidence 689999999998865432111100 1 1246889888643
No 216
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=62.12 E-value=3.3 Score=40.41 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=16.5
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
|.-||.|+++||.|++.-.+
T Consensus 171 C~~C~~C~~~CP~~vi~~d~ 190 (259)
T cd07030 171 CDGCGKCVEECPRGVLELEE 190 (259)
T ss_pred CCChHHHHHhCCccceEccC
Confidence 55689999999999997544
No 217
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=61.95 E-value=2.8 Score=34.22 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=12.6
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
+-=||.|+..||-||+.-.+
T Consensus 42 CigC~~C~~aCP~~ai~~~~ 61 (98)
T PF13247_consen 42 CIGCGYCVEACPYGAIRFDP 61 (98)
T ss_dssp CCTHHHHHHH-TTS-EEEET
T ss_pred ccCchhhhhhhccCcceeec
Confidence 33567888888888887655
No 218
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=61.70 E-value=2.1 Score=44.43 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=25.8
Q ss_pred Cccccc--ccccccccCcccccccccccccccceeeeeeeccCCCCCcE
Q 009859 35 TSELSG--NVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 81 (523)
Q Consensus 35 ~~~~~G--n~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i 81 (523)
.|.-|+ .|+.+||+||+.-..-. ..-.-+ +....-|..|...|..
T Consensus 182 ~C~HC~nP~CV~ACPtGAI~k~eed-GiV~ID-~dkCiGCg~CV~ACPy 228 (492)
T TIGR01660 182 LCEHCLNPACVASCPSGAIYKREED-GIVLID-QDKCRGWRMCISGCPY 228 (492)
T ss_pred cCcCCCcccchhhCccCCeEEecCC-CeEEEe-hhhccChHHHHHhCCC
Confidence 477788 79999999999622100 000001 1223345667777874
No 219
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=61.43 E-value=71 Score=27.61 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEE
Q 009859 142 ALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLV 221 (523)
Q Consensus 142 Al~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~ 221 (523)
+++.+++.++.. +.+.+++.+..-.-...+..+|.+..+-+-.... ...+. .+ +...+..-+.++++
T Consensus 2 ~~~~~a~~~~~~--~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~------~~e~~----hg-~~~~~~~~~~vi~i 68 (153)
T cd05009 2 DIKELAEKLKEA--KSFYVLGRGPNYGTALEGALKLKETSYIHAEAYS------AGEFK----HG-PIALVDEGTPVIFL 68 (153)
T ss_pred hHHHHHHHHhcc--CcEEEEcCCCCHHHHHHHHHHHHHHHhhcceecc------HHHhc----cC-hhhhccCCCcEEEE
Confidence 466777887775 4676666554333233344455554322211111 01111 11 34455556666666
Q ss_pred cCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 222 GTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 222 G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
-..- .+... ..++.+..+++|++++.|....
T Consensus 69 s~~g-~t~~~-~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 69 APED-RLEEK-LESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred ecCC-hhHHH-HHHHHHHHHHcCCEEEEEecCC
Confidence 5322 22222 2334444456899999998754
No 220
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=61.43 E-value=2.7 Score=43.94 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=27.5
Q ss_pred cccccccccccccCcccccccccccccccceeeeeeeccCCCCCcEE
Q 009859 36 SELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIR 82 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~ 82 (523)
|.-||.|+++||++|++..+..+. . + .....-|..|...|...
T Consensus 12 Ci~C~~C~~~CP~~ai~~~~~~~~-i--~-~~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 12 CIRCNTCEETCPIDAITHDDRNYV-V--K-ADVCNGCMACVSPCPTG 54 (411)
T ss_pred CcCccchhhhCCcccEeccCCceE-e--C-cccCcCHHHHHhhcCcc
Confidence 667999999999999976543221 0 1 12334566676778644
No 221
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.16 E-value=3.6 Score=45.73 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
..+-|+++|+-|.. +. ....++ +.|.+|++++...
T Consensus 309 ~~kkVaIIG~GpaG----l~-aA~~L~-~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAG----LG-CADILA-RAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHH----HH-HHHHHH-HcCCcEEEEeCCC
Confidence 46889999986543 11 122222 3688999997543
No 222
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=60.94 E-value=3.1 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=18.6
Q ss_pred CcCcccccc-------------cccccccCccccc
Q 009859 33 LMTSELSGN-------------VIDICPVGALTSK 54 (523)
Q Consensus 33 ~~~~~~~Gn-------------~idvCPvGAlt~k 54 (523)
...|++|+. |+++||+|||+--
T Consensus 171 ~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG 205 (328)
T PRK10882 171 IHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFG 205 (328)
T ss_pred eeecccccccchhhhhcCCCChhhhhccccceEec
Confidence 456999999 9999999999643
No 223
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=60.93 E-value=2.4 Score=36.70 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.4
Q ss_pred cCcccccccccccccCccccccc
Q 009859 34 MTSELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~~ 56 (523)
-.|..||.|+.+||+||+.-..+
T Consensus 45 ~~C~~Cg~Cv~~CP~~AI~~~~~ 67 (132)
T TIGR02060 45 DMCWECYSCVKACPQGAIDVRGY 67 (132)
T ss_pred hhCccHHHHHHhCCcCceEEECc
Confidence 35778999999999999987653
No 224
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=59.93 E-value=3.7 Score=31.67 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.1
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||++|+...
T Consensus 27 C~~C~~C~~~Cp~~ai~~~ 45 (78)
T TIGR02179 27 CIKCKNCWLYCPEGAIQED 45 (78)
T ss_pred CcChhHHHhhcCccceEec
Confidence 4568999999999998764
No 225
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=59.87 E-value=3.5 Score=33.77 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.2
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||+|+++-.
T Consensus 36 C~~C~~C~~~CP~~~i~~~ 54 (101)
T TIGR00402 36 CTRCGECASACENNILQLG 54 (101)
T ss_pred CcChhHHHHHcCcccceec
Confidence 5669999999999998754
No 226
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=59.42 E-value=25 Score=38.63 Aligned_cols=108 Identities=15% Similarity=0.014 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 212 (523)
++.++.+++.|.+.+ +..++.|.... ......+.+|++.+|.+.+.+...-.. ....+|.....+. ...-+
T Consensus 190 ~~~i~~~~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l 267 (586)
T PRK06276 190 PLQIKKAAELIAEAE--RPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSV 267 (586)
T ss_pred HHHHHHHHHHHHcCC--CeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHH
Confidence 677899999998763 56666664321 123345789999999987654322111 1111222111121 12347
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+++|+||++|+............ . ..+.+++.||...
T Consensus 268 ~~aD~vl~lG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 304 (586)
T PRK06276 268 TESDVLIAIGCRFSDRTTGDISS----F-APNAKIIHIDIDP 304 (586)
T ss_pred HcCCEEEEECCCCCccccCCccc----c-CCCCeEEEEECCH
Confidence 89999999998754322100101 1 2456888887643
No 227
>PRK08266 hypothetical protein; Provisional
Probab=59.04 E-value=22 Score=38.69 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCC--CccccccCCE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT--SISGLEKADC 217 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~di~~ad~ 217 (523)
.+.++.+++.|.+.+ +..++.|.... +....+.+|++.+|.+.+.+...-..+..+ .....|. ...-++++|+
T Consensus 192 ~~~i~~~~~~L~~Ak--rPvIv~G~g~~-~a~~~l~~lae~~g~pv~tt~~~kg~~~~~--hp~~~g~~~~~~~~~~aDl 266 (542)
T PRK08266 192 PDAIAAAAALIAAAK--NPMIFVGGGAA-GAGEEIRELAEMLQAPVVAFRSGRGIVSDR--HPLGLNFAAAYELWPQTDV 266 (542)
T ss_pred HHHHHHHHHHHHhCC--CCEEEECCChh-hHHHHHHHHHHHHCCCEEEeccccccCCCC--CccccCCHHHHHHHHhCCE
Confidence 466788888887753 55566664432 334568889999999876443221011100 0001111 1245679999
Q ss_pred EEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 218 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 218 il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
||.+|+.+... ... + .....+.+++.||..
T Consensus 267 vl~lG~~~~~~--~~~-~---~~~~~~~~~i~id~d 296 (542)
T PRK08266 267 VIGIGSRLELP--TFR-W---PWRPDGLKVIRIDID 296 (542)
T ss_pred EEEeCCCcCcc--ccc-c---cccCCCCcEEEEECC
Confidence 99999875443 111 1 111246789998764
No 228
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=58.93 E-value=46 Score=32.56 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+. ++|.+++.+.+..-..++..+|. .+|-+...... ..+. ......+..-|++|+
T Consensus 116 ~~i~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~-~~g~~~~~~~~------~~~~-----~~~~~~~~~~D~vI~ 181 (284)
T PRK11302 116 SAINRAVDLLTQA--KKISFFGLGASAAVAHDAQNKFF-RFNVPVVYFDD------IVMQ-----RMSCMNSSDGDVVVL 181 (284)
T ss_pred HHHHHHHHHHHcC--CeEEEEEcchHHHHHHHHHHHHH-hcCCceEecCC------HHHH-----HHHHHhCCCCCEEEE
Confidence 5567777777765 46766554433222223333343 35543322211 0000 001234567788888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+...-.. +-+...++.+ +++|++++.|-..
T Consensus 182 iS~sG~t--~~~~~~~~~a-k~~g~~vI~IT~~ 211 (284)
T PRK11302 182 ISHTGRT--KSLVELAQLA-RENGATVIAITSA 211 (284)
T ss_pred EeCCCCC--HHHHHHHHHH-HHcCCeEEEECCC
Confidence 8654332 2333345554 4599999999864
No 229
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=58.46 E-value=3.9 Score=42.18 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=16.5
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.|.-||.|+.+||++|+..
T Consensus 8 kCi~Cg~Cv~~CP~~ai~~ 26 (374)
T TIGR02512 8 KCIGCGRCVRACTNVQIVG 26 (374)
T ss_pred hCCcChHhhhhCCHhhccc
Confidence 4667999999999999873
No 230
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=57.64 E-value=67 Score=34.54 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=38.7
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
.+-++++++|.||..+.|-. .++++++.++---+|++|+..+.|+..+|+
T Consensus 327 ~~ik~l~~~g~Np~~~~p~~-~~~~~a~l~~~~f~Vv~D~~~teTa~~ADv 376 (501)
T cd02766 327 PPVKALWVYNSNPVAQAPDS-NKVRKGLAREDLFVVVHDQFMTDTARYADI 376 (501)
T ss_pred CCeeEEEEeCCCHHhhCCCH-HHHHHHHhcCCCeEEEEecCcCchHhhccE
Confidence 46799999999999888765 457774443333678889999999998884
No 231
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=57.42 E-value=3.3 Score=42.13 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.7
Q ss_pred CcccccccccccccCccccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~ 56 (523)
.|.-||.|+.+||+||++-.+.
T Consensus 13 ~C~gCg~C~~~CP~~aI~~~~~ 34 (341)
T PRK09326 13 VCTACGACEAVCPIGAITVDKK 34 (341)
T ss_pred cCcChHHHHHhCCHhhhecccC
Confidence 4678999999999999987653
No 232
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=57.18 E-value=4.1 Score=32.69 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.5
Q ss_pred CcCcccccccccccccCcccccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSKPFA 57 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k~~~ 57 (523)
.-.+..||.|+.+||++|+.-....
T Consensus 62 ~~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 62 PDLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred cccCccccchHhhCCcCCeehhhcc
Confidence 3457899999999999997655433
No 233
>PRK07064 hypothetical protein; Provisional
Probab=57.15 E-value=24 Score=38.40 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcCcccCCC-c-ccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNTS-I-SGL 212 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~~~-~-~di 212 (523)
-++.++.+++.|.+.+ +..++.|.... +....+.+|++ +|.+.+.+...-..+ ...+|... +.. . .-+
T Consensus 189 ~~~~i~~~~~~l~~Ak--rPvi~~G~g~~-~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~--~~~~~~~~~ 262 (544)
T PRK07064 189 DAAAVAELAERLAAAR--RPLLWLGGGAR-HAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFN--NSAAVEALY 262 (544)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECCChH-hHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCC--CCHHHHHHH
Confidence 3678888888888763 55566665432 23345788999 999876543322111 11222111 111 1 235
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+++|+||.+|+.+..... ..... . ...+++.||..
T Consensus 263 ~~aDlvl~iG~~~~~~~~-~~~~~----~-~~~~~i~id~d 297 (544)
T PRK07064 263 KTCDLLLVVGSRLRGNET-LKYSL----A-LPRPLIRVDAD 297 (544)
T ss_pred HhCCEEEEecCCCCcccc-ccccc----C-CCCceEEEeCC
Confidence 789999999997654321 11111 1 23578888764
No 234
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=56.91 E-value=1.3e+02 Score=27.13 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 219 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 219 (523)
++.++.+++.|.+. ++|.+++.+....-..++..+| ..+|........ . ....+.+-|++|
T Consensus 17 ~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~Dv~I 77 (179)
T TIGR03127 17 EEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRL-MHLGFNVYVVGE--------T--------TTPSIKKGDLLI 77 (179)
T ss_pred HHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHH-HhCCCeEEEeCC--------c--------ccCCCCCCCEEE
Confidence 36677788888764 4676666554332223333344 334542221110 0 123456678888
Q ss_pred EEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 220 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 220 ~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
++.... + .+-+...++.+ +++|++++.|-..
T Consensus 78 ~iS~sG-~-t~~~i~~~~~a-k~~g~~ii~IT~~ 108 (179)
T TIGR03127 78 AISGSG-E-TESLVTVAKKA-KEIGATVAAITTN 108 (179)
T ss_pred EEeCCC-C-cHHHHHHHHHH-HHCCCeEEEEECC
Confidence 886432 2 23344445555 4599999998543
No 235
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=56.50 E-value=2.7 Score=30.06 Aligned_cols=16 Identities=31% Similarity=0.806 Sum_probs=7.9
Q ss_pred cCcccccccccccccC
Q 009859 34 MTSELSGNVIDICPVG 49 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvG 49 (523)
..+..||+|.++||+|
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 4577899999999997
No 236
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=56.31 E-value=19 Score=39.07 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcC-cccCC--Ccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSG-YIMNT--SIS 210 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~-~~~~~--~~~ 210 (523)
.+++++.+++.|++.+ +..++.|... .......+.+|++.+|.+.+.+...-..+ ...+|.. ...+. ...
T Consensus 191 ~~~~i~~a~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~ 268 (539)
T TIGR03393 191 LRAFRDAAENKLAMAK--RVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKE 268 (539)
T ss_pred HHHHHHHHHHHHHhCC--CCEEEeChhhcccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHH
Confidence 3456889999998864 4555555332 11234468899999998876443322111 1122211 11111 124
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
-+++||+||++|+...+.....+.. . . ...++|.||+..
T Consensus 269 ~~~~aDlvl~lG~~l~~~~~~~~~~--~-~--~~~~~I~id~~~ 307 (539)
T TIGR03393 269 AIEGADAVICVGVRFTDTITAGFTH--Q-L--TPEQTIDVQPHA 307 (539)
T ss_pred HHhhCCEEEEECCcccccccceeec--c-C--CcccEEEEcCCe
Confidence 5689999999998754322111110 0 1 124789898854
No 237
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=55.99 E-value=6.5 Score=36.11 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=18.1
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.+||+|+++||+|||+-..
T Consensus 103 ~Ci~Cg~Cv~aCP~~AI~~~~ 123 (183)
T TIGR00403 103 VCIFCGNCVEYCPTNCLSMTE 123 (183)
T ss_pred cccCcCchhhhcCCCCeeccc
Confidence 488999999999999997643
No 238
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=55.64 E-value=4.4 Score=39.18 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.1
Q ss_pred CcCcccccccccccccCcc
Q 009859 33 LMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAl 51 (523)
...|-.||+|.++||.|--
T Consensus 211 v~~C~~Cg~Cs~VCPk~I~ 229 (250)
T PRK07570 211 FGNCTNTGECEAVCPKGIS 229 (250)
T ss_pred cccCcccCccccccCCCCC
Confidence 3468899999999999874
No 239
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=55.48 E-value=8.5 Score=42.17 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=36.8
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
.+.+.++++|.||... ++.++..-+|++|+..++|+..||+.||...
T Consensus 158 ~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~irP 213 (567)
T cd02765 158 VNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIRP 213 (567)
T ss_pred hcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEeccCC
Confidence 4679999999998531 1223445688889999999999999999874
No 240
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=55.37 E-value=4.2 Score=47.25 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.1
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||+|+++||++|+.=+.
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccchHHHhCCCCccccee
Confidence 489999999999999996554
No 241
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=55.36 E-value=43 Score=34.56 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCC-CCcHHHHHHHHHHHHHcCCCccccCCCc----cchhhhhhcCcccCCCc--cccc
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGR-LSDAESMMALKDFLNRMGSNNVWCEGTG----AQSNADLRSGYIMNTSI--SGLE 213 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~-~~~~e~~~~~~~l~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~di~ 213 (523)
.-++.+++.|+..++ -+.+++++ ..+.+.-.++++|.+..+.+...+-... |.....+..-++.|+.+ ..++
T Consensus 286 ~~i~~~a~Li~laKK-PVlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq 364 (675)
T KOG4166|consen 286 SHIEQIARLISLAKK-PVLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQ 364 (675)
T ss_pred HHHHHHHHHHHhccC-ceEEeCcccccCCcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhh
Confidence 456677777776653 34444443 2333445678999988776543222111 21111111111223333 3468
Q ss_pred cCCEEEEEcCCC--Ccch--hhHHHHHHHHHHhCCCeEEEEc
Q 009859 214 KADCFLLVGTQP--RVEA--AMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 214 ~ad~il~~G~n~--~~~~--p~~~~~lr~a~~~~g~klv~id 251 (523)
+||+||.+|.-. +.+. ..++.+.|.|+.+...-||.+|
T Consensus 365 ~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfd 406 (675)
T KOG4166|consen 365 HADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFD 406 (675)
T ss_pred ccceeEEecceeccccccchhhhChhhhhhhhcccCceEEEe
Confidence 999999999743 2222 2344556655543333466554
No 242
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=55.24 E-value=5 Score=40.28 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=16.0
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|..||.|+.+||++|+.
T Consensus 248 ~Ci~C~~C~~~CP~~ai~ 265 (312)
T PRK14028 248 KCIMCRKCWLYCPDDAII 265 (312)
T ss_pred cCcCcccccccCChhhhh
Confidence 477899999999999985
No 243
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=54.96 E-value=4.6 Score=33.38 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.3
Q ss_pred cccccccccccccCcccc
Q 009859 36 SELSGNVIDICPVGALTS 53 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~ 53 (523)
|.-||.|+++||.+|+..
T Consensus 53 Ci~C~~C~~~CP~~ai~~ 70 (105)
T PRK09623 53 CVKCYICWKFCPEPAIYI 70 (105)
T ss_pred CccccchhhhCCHhheEe
Confidence 567999999999999854
No 244
>PRK09898 hypothetical protein; Provisional
Probab=54.74 E-value=4.6 Score=37.94 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=27.4
Q ss_pred cCccccc--ccccccccCcccccccccccccccce-eeeeeeccCCCCCcEE
Q 009859 34 MTSELSG--NVIDICPVGALTSKPFAFKARNWELK-GTETIDVTDAVGSNIR 82 (523)
Q Consensus 34 ~~~~~~G--n~idvCPvGAlt~k~~~~~aR~Wel~-~~~siC~~C~~gC~i~ 82 (523)
..|..|+ .|+.+||+|||+.++-. . .+.+. ..-.-|..|...|...
T Consensus 121 ~~C~~C~~~~C~~~CP~gAi~~~~~~-g--~v~vd~~~CigC~~C~~aCP~~ 169 (208)
T PRK09898 121 DTCRQCKEPQCMNVCPIGAITWQQKE-G--CITVDHKRCIGCSACTTACPWM 169 (208)
T ss_pred ccCCCccCcchhhhCCcceEEeeccC-C--eEEeccccCCCcCcccccCCCC
Confidence 3577888 69999999999754311 1 11111 1122456666778654
No 245
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=54.62 E-value=3.4 Score=39.63 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.4
Q ss_pred cCcccccccccccccCcccccc
Q 009859 34 MTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
..|..||.|++.||++|+..++
T Consensus 177 ~~C~~Cg~C~~~CP~~AI~~~~ 198 (234)
T TIGR02700 177 LKCVGCGKCKEACPYNAIHGGL 198 (234)
T ss_pred hhCCccchHHhhCCCCceecCC
Confidence 3578899999999999998663
No 246
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=54.62 E-value=4.5 Score=33.43 Aligned_cols=19 Identities=16% Similarity=0.023 Sum_probs=16.0
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+.+||++|+...
T Consensus 53 Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09624 53 CVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred CcChhhHHhhCCHhhEEec
Confidence 5679999999999998643
No 247
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=54.44 E-value=3.6 Score=36.92 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=24.6
Q ss_pred cccccccccCcccccccccccccccceeeeeeeccCCCCCcE
Q 009859 40 GNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 81 (523)
Q Consensus 40 Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i 81 (523)
--|..+|||||++... ...+-.+..---|..|..-|.+
T Consensus 59 aPC~~vCP~~AI~~~~----~~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 59 APCAEVCPVGAITRDD----GAVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred cchhhhCchhheeecC----CceEEchhhccCcchhhhcCCc
Confidence 5789999999999882 2233333344445666777853
No 248
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=54.30 E-value=4.4 Score=30.19 Aligned_cols=14 Identities=43% Similarity=0.881 Sum_probs=11.6
Q ss_pred ccccccccccCccc
Q 009859 39 SGNVIDICPVGALT 52 (523)
Q Consensus 39 ~Gn~idvCPvGAlt 52 (523)
-=..|+.||.|||+
T Consensus 47 v~~~v~~CPSGAL~ 60 (64)
T PF06902_consen 47 VREAVDRCPSGALS 60 (64)
T ss_pred HHHHHHcCCccCcE
Confidence 34678999999996
No 249
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=54.26 E-value=26 Score=33.01 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=30.7
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 257 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t 257 (523)
+.++++|++|++|+..... | .+.-++.+ +++|+++++|++..+..
T Consensus 163 ~~~~~~Dl~lvlGTSl~V~-p-~~~l~~~~-~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 163 EALAKADLLLVIGTSLQVY-P-AAGLPLYA-PERGAPVVIINLEPTPA 207 (218)
T ss_pred HHHhcCCEEEEeCCCcccc-c-HHHHHHHH-HHCCCeEEEECCCCCCC
Confidence 3456799999999765543 3 33334444 34899999999876543
No 250
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=54.17 E-value=83 Score=26.69 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=46.5
Q ss_pred cEEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCC-CCE
Q 009859 80 NIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKP-EEI 158 (523)
Q Consensus 80 ~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~-~~i 158 (523)
-+.+++.||+|+.+.-+..+. +|++--+...-.|..+-|+- +.-++++..+|++|-+.+. +.+
T Consensus 49 f~~iti~dGKiv~~~ydy~~k--------~G~~Ks~DAdy~~~mk~~~g--------~gp~~~f~~laD~Lve~q~p~~V 112 (147)
T COG4939 49 FVTITIQDGKIVACTYDYRDK--------KGNIKSDDADYAGEMKYMKG--------QGPVQGFSTLADKLVEVQDPNEV 112 (147)
T ss_pred eEEEEEeCCEEEEEEeeeecC--------CCCccccchhhHHHHHHhcc--------cCHHHHHHHHHHHHHhcCCccce
Confidence 578899999999987654332 45544333322344444432 3358999999999988765 667
Q ss_pred EEEeCCCCc
Q 009859 159 VGIAGRLSD 167 (523)
Q Consensus 159 ~~~~g~~~~ 167 (523)
-+++|...+
T Consensus 113 dvVsGATvS 121 (147)
T COG4939 113 DVVSGATVS 121 (147)
T ss_pred eeeeccccc
Confidence 667775433
No 251
>PRK13984 putative oxidoreductase; Provisional
Probab=54.11 E-value=7.9 Score=42.76 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=43.8
Q ss_pred eeeeecCCCCceEecCCCC---------C----cCcccccccccccccCccccccc-----ccccccccce---eeeeee
Q 009859 14 DLGMLGRGSGEEIGTYVEK---------L----MTSELSGNVIDICPVGALTSKPF-----AFKARNWELK---GTETID 72 (523)
Q Consensus 14 ~lg~~~rg~~~~i~~~~~~---------~----~~~~~~Gn~idvCPvGAlt~k~~-----~~~aR~Wel~---~~~siC 72 (523)
+|..+.|+.-|.--++... . -.|.-||.|+++||+||+..... .+...++... ....-|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c 91 (604)
T PRK13984 12 AWKFLFRKPVTIKVPNVKREAAERYRGFHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFC 91 (604)
T ss_pred HHHHhcCCCcceECCCCCCCCCccccCccccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCc
Confidence 4455666666664443321 1 13677999999999999864321 1111111111 122345
Q ss_pred ccCCCCCcEEEEEECCEEEEEecC
Q 009859 73 VTDAVGSNIRIDSRGPEVMRILPR 96 (523)
Q Consensus 73 ~~C~~gC~i~v~vr~g~v~rv~~~ 96 (523)
..|..-|....-...++.+.+..+
T Consensus 92 ~~c~~~Cp~~Ai~~~~~~~~~~~~ 115 (604)
T PRK13984 92 ALCVDICTTGSLKMTREYIHISPD 115 (604)
T ss_pred chHHhhCCcCcEEecceEEEeecC
Confidence 666677876544444555454443
No 252
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=53.81 E-value=25 Score=38.37 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCc-cccccCC
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSI-SGLEKAD 216 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~di~~ad 216 (523)
-++.++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+.+...-..+..+. ....|... .-+++||
T Consensus 192 ~~~~~~~~~~~L~~Ak--rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~h--p~~~g~~~~~~~~~aD 267 (554)
T TIGR03254 192 SPDSVDRAVELLKDAK--RPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTH--PQSAAAARSFALAEAD 267 (554)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCC--chhhhHHHHHHHhcCC
Confidence 3678999999998764 4455555432 123345688999999998764433211111100 00111112 3478999
Q ss_pred EEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 217 CFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 217 ~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+||++|+.........+. ... ..+.++|.||...
T Consensus 268 lvl~lG~~~~~~~~~~~~---~~~-~~~~~vI~id~d~ 301 (554)
T TIGR03254 268 VVMLVGARLNWLLSHGKG---KLW-GEDAKFIQVDIEP 301 (554)
T ss_pred EEEEECCCCchhhccCch---hhc-CCCCcEEEcCCCH
Confidence 999999875432211010 011 1357899888643
No 253
>PRK13936 phosphoheptose isomerase; Provisional
Probab=53.79 E-value=75 Score=29.41 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=23.8
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
..-|++|++...... +.+..-++.+ +++|+++|.|-..
T Consensus 110 ~~~Dv~i~iS~sG~t--~~~~~~~~~a-k~~g~~iI~IT~~ 147 (197)
T PRK13936 110 QPGDVLLAISTSGNS--ANVIQAIQAA-HEREMHVVALTGR 147 (197)
T ss_pred CCCCEEEEEeCCCCc--HHHHHHHHHH-HHCCCeEEEEECC
Confidence 467888888654432 3333334444 4589999998653
No 254
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=53.55 E-value=3.5 Score=43.23 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=25.7
Q ss_pred CcccccccccccccCcccccccccccccccceeeeeeeccCCCCCcE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 81 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i 81 (523)
.|.-||.|+++||+|.-... ........|..|...|.-
T Consensus 232 ~Ci~C~~Cv~vCP~gi~~~~---------~~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 232 DCIDCNLCVQVCPTGIDIRD---------GLQLECINCGLCIDACDD 269 (434)
T ss_pred CCCChhhhHHhCCCCCEeCC---------CCchhChhhhHHHHhCCC
Confidence 57789999999999942111 122334567778888985
No 255
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.52 E-value=54 Score=36.00 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=33.7
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCC-----------------cccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGD-----------------HGVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t-----------------~ta~~ADvvLP~a~ 400 (523)
.+.+.++++|.||... ++-++..-||++|+..+ .++..||..||...
T Consensus 162 ~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irP 234 (574)
T cd02767 162 EHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRI 234 (574)
T ss_pred hcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCC
Confidence 4689999999999641 12233446788898764 56788999998763
No 256
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=53.39 E-value=5.1 Score=38.13 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=27.8
Q ss_pred Ccccccc--cccccccCccccccccccccc-ccceeeeeeeccCCCCCcEEE
Q 009859 35 TSELSGN--VIDICPVGALTSKPFAFKARN-WELKGTETIDVTDAVGSNIRI 83 (523)
Q Consensus 35 ~~~~~Gn--~idvCPvGAlt~k~~~~~aR~-Wel~~~~siC~~C~~gC~i~v 83 (523)
.|..|++ |+++||+||+....- .... .+ ...-.-|..|...|...+
T Consensus 93 ~C~~C~~~~Cv~~CP~gAi~~~~~--~g~v~id-~~~C~~C~~C~~aCP~~A 141 (225)
T TIGR03149 93 SCQHCDNAPCVAVCPTGASFKDEE--TGIVDVH-KDLCVGCQYCIAACPYRV 141 (225)
T ss_pred hccCCcCcChHhhCCCCcEEEeCC--CCeEEec-hhhCCcchHHHHhCCCCC
Confidence 4678998 999999999964321 0010 11 112344566777787655
No 257
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=53.32 E-value=6.5 Score=37.28 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.6
Q ss_pred CCcCcccccccccccccCcc
Q 009859 32 KLMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAl 51 (523)
....|..||+|.++||+|.=
T Consensus 192 ~~~~C~~Cg~C~~~CP~~I~ 211 (220)
T TIGR00384 192 GVWRCTTCMNCSEVCPKGVN 211 (220)
T ss_pred CCccCccccccccccCCCCC
Confidence 44568899999999999864
No 258
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=53.13 E-value=1.2e+02 Score=25.40 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEc
Q 009859 143 LAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVG 222 (523)
Q Consensus 143 l~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G 222 (523)
++.+++.|.+. +++.+++.+.. ......++..+..+|-....... . .... .....+..-|++|++.
T Consensus 3 i~~~~~~i~~~--~~i~i~g~g~s-~~~a~~~~~~l~~~~~~~~~~~~-~-----~~~~-----~~~~~~~~~~~~i~iS 68 (139)
T cd05013 3 LEKAVDLLAKA--RRIYIFGVGSS-GLVAEYLAYKLLRLGKPVVLLSD-P-----HLQL-----MSAANLTPGDVVIAIS 68 (139)
T ss_pred HHHHHHHHHhC--CEEEEEEcCch-HHHHHHHHHHHHHcCCceEEecC-H-----HHHH-----HHHHcCCCCCEEEEEe
Confidence 45666777665 46766655543 33334455555566643222111 0 0000 0112344557777775
Q ss_pred CCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 223 TQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 223 ~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
..-.. +-....+++ ++++|+++++|-....
T Consensus 69 ~~g~~--~~~~~~~~~-a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 69 FSGET--KETVEAAEI-AKERGAKVIAITDSAN 98 (139)
T ss_pred CCCCC--HHHHHHHHH-HHHcCCeEEEEcCCCC
Confidence 43322 223333444 4568999999977544
No 259
>PRK15482 transcriptional regulator MurR; Provisional
Probab=52.95 E-value=79 Score=31.04 Aligned_cols=96 Identities=16% Similarity=0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+. ++|.+++.+....-..++..+| ..+|.+..... + ..... .....+..-|++|+
T Consensus 123 ~~l~~~~~~i~~A--~~I~i~G~G~S~~~A~~l~~~l-~~~g~~~~~~~-d-----~~~~~-----~~~~~~~~~Dv~i~ 188 (285)
T PRK15482 123 ARLQKIIEVISKA--PFIQITGLGGSALVGRDLSFKL-MKIGYRVACEA-D-----THVQA-----TVSQALKKGDVQIA 188 (285)
T ss_pred HHHHHHHHHHHhC--CeeEEEEeChhHHHHHHHHHHH-HhCCCeeEEec-c-----HhHHH-----HHHhcCCCCCEEEE
Confidence 4567777777665 4676665554332223333333 34664322111 0 00000 11234566788888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+.... ++ +-....++.+ +++|+++|.|-..
T Consensus 189 iS~sg-~t-~~~~~~~~~a-~~~g~~iI~IT~~ 218 (285)
T PRK15482 189 ISYSG-SK-KEIVLCAEAA-RKQGATVIAITSL 218 (285)
T ss_pred EeCCC-CC-HHHHHHHHHH-HHCCCEEEEEeCC
Confidence 86533 22 2333445555 4589999999654
No 260
>PRK13795 hypothetical protein; Provisional
Probab=52.91 E-value=3.3 Score=45.93 Aligned_cols=45 Identities=13% Similarity=-0.005 Sum_probs=26.6
Q ss_pred CcccccccccccccCcccccccccccccccceeeeeeeccCCCCCcE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 81 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i 81 (523)
.|.-||.|+++||+||+.-..-.....-. .....-|..|...|..
T Consensus 582 ~C~~Cg~C~~~CP~~ai~~~~~~~~~~id--~~~C~~Cg~C~~aCP~ 626 (636)
T PRK13795 582 ECVGCGVCVGACPTGAIRIEEGKRKISVD--EEKCIHCGKCTEVCPV 626 (636)
T ss_pred cCCCHhHHHHhCCcccEEeecCCceEEec--hhhcCChhHHHhhcCC
Confidence 36679999999999998765422110000 0123345556666754
No 261
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=52.84 E-value=4.1 Score=40.47 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.3
Q ss_pred cCccccc--ccccccccCcccc
Q 009859 34 MTSELSG--NVIDICPVGALTS 53 (523)
Q Consensus 34 ~~~~~~G--n~idvCPvGAlt~ 53 (523)
..|..|+ -|+++||+||+..
T Consensus 129 ~~C~hC~nP~Cv~aCPtgAI~k 150 (321)
T TIGR03478 129 RICNHCTNPACLAACPTGAIYK 150 (321)
T ss_pred ccCCCCCCccchhhCCcCcEEE
Confidence 3577788 4899999998863
No 262
>PRK05858 hypothetical protein; Provisional
Probab=52.82 E-value=24 Score=38.36 Aligned_cols=104 Identities=21% Similarity=0.150 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccC-CCccccccCCE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMN-TSISGLEKADC 217 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~di~~ad~ 217 (523)
.+.++.+++.|.+.+ +..++.|.... .+....+.+|++.+|.+.+.+...-..+..+. ....+ .....++++|+
T Consensus 190 ~~~i~~~~~~L~~Ak--rPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~h--pl~~~~~~~~~l~~aD~ 265 (542)
T PRK05858 190 PDALARAAGLLAEAQ--RPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADH--PLAFSRARGKALGEADV 265 (542)
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCC--chhhhHHHHHHHHhCCE
Confidence 567899999998764 45556664321 23445788999999988764433211111100 00011 11245789999
Q ss_pred EEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 218 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 218 il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
||.+|+.+... .... . . ..+.++|.||+..
T Consensus 266 vl~vG~~~~~~-~~~~-~----~-~~~~~~i~id~d~ 295 (542)
T PRK05858 266 VLVVGVPMDFR-LGFG-V----F-GGTAQLVHVDDAP 295 (542)
T ss_pred EEEECCCCccc-cccc-c----c-CCCCEEEEECCCH
Confidence 99999865321 1111 1 1 2357999998753
No 263
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=52.74 E-value=4.1 Score=39.72 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.9
Q ss_pred cCcccccccccccccCcccc
Q 009859 34 MTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~ 53 (523)
-.|.+||.|+.+||.+|+.-
T Consensus 199 ~~C~~C~~C~~~Cp~~AI~~ 218 (259)
T cd07030 199 EDCSLCKLCERACDAGAIRV 218 (259)
T ss_pred hhCcCchHHHHhCCCCcEEE
Confidence 36889999999999988863
No 264
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=52.69 E-value=1.1e+02 Score=32.58 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=37.6
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
.-++++++|.||..+.|-.. +++++.+ +---+|++|+..+.|+..+|+
T Consensus 329 ~ik~l~v~g~Np~~~~p~~~-~~~~al~-~~~~vV~~d~~~teTa~~ADv 376 (477)
T cd02759 329 PVKMLIVFGTNPLASYADTA-PVLEALK-ALDFIVVVDLFMTPTAMLADI 376 (477)
T ss_pred CcEEEEEeCCCccccCCCHH-HHHHHHh-cCCeEEEEecCcCchHhhCCE
Confidence 45899999999999998655 4677654 333668999999999988874
No 265
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=52.48 E-value=1.1e+02 Score=32.28 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=38.0
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
+-+.++++|.||..+.|-. .+++++.+ +---+|++|+..+.|+..+|+
T Consensus 330 ~ik~l~~~~~Np~~~~p~~-~~~~~al~-~l~f~V~~d~~~teTa~~ADi 377 (454)
T cd02755 330 PIKALFIYRTNPFHSMPDR-ARLIKALK-NLDLVVAIDILPSDTALYADV 377 (454)
T ss_pred CceEEEEcCCCcccccCCH-HHHHHHHh-cCCeEEEEeCCcCchHhhCCE
Confidence 4689999999999999875 45677664 333578999999999998883
No 266
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=52.37 E-value=91 Score=36.05 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccC----CCcc-chh-hhhhcCcccCCCccc
Q 009859 138 NWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCE----GTGA-QSN-ADLRSGYIMNTSISG 211 (523)
Q Consensus 138 sWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~----~~~~-~~~-~~~~~~~~~~~~~~d 211 (523)
.|.+.+..+|+.|.+.+. .+.+++.+.........+..++..+|....... .... ..+ .+++... ...-+..
T Consensus 478 ~~~~~i~~~A~~la~a~~-~~I~~G~g~~~~~~~~~~~~l~~~l~~~g~~gG~~~l~~~~n~~G~~~~g~~~-~~~l~~~ 555 (847)
T PRK08166 478 ELQAKADVIAQALAGAKK-PLIISGTSAGSPAIIEAAANVAKALKGRGADVGITLVAPEANSMGLALLGGGS-LEEALEE 555 (847)
T ss_pred chhHHHHHHHHHHhcCCC-cEEEEeCcccChHHHHHHHHHHHHHhccCCCceEEEeccchhHHHHHHhcCCC-HHHHHHH
Confidence 466788899999987653 333333333232333444455556643110000 0000 001 1111100 0001122
Q ss_pred cc--cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 212 LE--KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 212 i~--~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
++ +-+.++++|.||....+ ..+++++.. +---+|++|+..+.|+..+|+
T Consensus 556 i~~g~ikal~v~g~np~~~~~--~~~~~~aL~-~~dflVv~d~f~teTA~~ADv 606 (847)
T PRK08166 556 LESGRADAVIVLENDLYRHAP--AARVDAALA-KAPLVIVLDHQRTATMEKAHL 606 (847)
T ss_pred HHcCCCCEEEEeCCCcccCcC--HHHHHHHHh-cCCEEEEEccccCCccccCCE
Confidence 32 46889999999875432 446777654 434678999999999988873
No 267
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=52.36 E-value=8.7 Score=37.06 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.5
Q ss_pred cccccccccccccCcccccc
Q 009859 36 SELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~ 55 (523)
|.-||.|+++||.||+.-.+
T Consensus 132 CigC~~Cv~aCP~~Ai~~~~ 151 (244)
T PRK14993 132 CVGCAYCVQACPYDARFINH 151 (244)
T ss_pred CCCHHHHHHhcCCCCCEEeC
Confidence 66789999999999998655
No 268
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=52.32 E-value=1.5e+02 Score=31.55 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=36.3
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
+-|+++++|.||....|-. ..+++.+ +---+|++|+..+.|+..+++
T Consensus 338 ~ik~l~~~g~np~~~~p~~--~~~~al~-~~~~~V~~d~~~t~ta~~ADv 384 (472)
T cd02771 338 SADALIVLGNDLYRSAPER--RVEAALD-AAEFVVVLDHFLTETAERADV 384 (472)
T ss_pred CceEEEEeccCcccCCChH--HHHHHHh-cCCeEEEEecCCChhHHhCCE
Confidence 4789999999999988863 3366543 434778999999999888873
No 269
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=52.29 E-value=25 Score=33.82 Aligned_cols=45 Identities=27% Similarity=0.255 Sum_probs=31.2
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 257 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t 257 (523)
..++++|++|++|+.... .|.. ..++.+ +++|+++++|++..+..
T Consensus 173 ~~~~~~dl~lviGTsl~V-~p~~-~l~~~~-~~~~~~~i~iN~~~~~~ 217 (242)
T PRK00481 173 EALEEADLFIVIGTSLVV-YPAA-GLPYEA-REHGAKTVEINLEPTPL 217 (242)
T ss_pred HHHhcCCEEEEECCCceE-cCHh-HHHHHH-HHCCCeEEEECCCCCCC
Confidence 345689999999976655 5543 223333 34899999999976543
No 270
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=52.25 E-value=7.3 Score=37.78 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.8
Q ss_pred cCCCCCcCcccccccccccccCccccccc
Q 009859 28 TYVEKLMTSELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 28 ~~~~~~~~~~~~Gn~idvCPvGAlt~k~~ 56 (523)
.|.-.+.-|+=||-|.-+||++|++.++.
T Consensus 93 ~~~~~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 93 KPVLNPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred ceecCcccccCcccceeeCCCcccccccc
Confidence 34445667899999999999999999884
No 271
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=51.98 E-value=78 Score=27.20 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=46.0
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCC-CccchhhhhhcCcccCCCccccc--cCCEEEEEcCCCCc----ch
Q 009859 157 EIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEG-TGAQSNADLRSGYIMNTSISGLE--KADCFLLVGTQPRV----EA 229 (523)
Q Consensus 157 ~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~di~--~ad~il~~G~n~~~----~~ 229 (523)
+|+++..+..+..+.......++.-|. ++..-+ .........+.......++.+.. +.|.+++.|..... ..
T Consensus 3 ~v~ill~~g~~~~e~~~~~~~~~~a~~-~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~ 81 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAGA-NVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81 (142)
T ss_pred EEEEEEcCCcCHHHHHHHHHHHHHCCC-EEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence 477777666655555555555544342 111111 00000001111111112455543 57999999875432 23
Q ss_pred hhHHHHHHHHHHhCCCeEEEEc
Q 009859 230 AMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 230 p~~~~~lr~a~~~~g~klv~id 251 (523)
+.+..++++..+ +|..|..|.
T Consensus 82 ~~l~~~l~~~~~-~~~~I~aic 102 (142)
T cd03132 82 GRALHFVTEAFK-HGKPIGAVG 102 (142)
T ss_pred hHHHHHHHHHHh-cCCeEEEcC
Confidence 556667877765 777777665
No 272
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=51.44 E-value=1.8e+02 Score=26.07 Aligned_cols=48 Identities=8% Similarity=0.026 Sum_probs=28.1
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC-CCCCcchhc
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA-TDLNYDHQH 262 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~-~~~t~~~a~ 262 (523)
+..-|++|++...- +.+-....++.+ +++|+++|.|-.. .+..+..++
T Consensus 99 ~~~~Dv~I~iS~SG--~t~~~i~~~~~a-k~~Ga~vI~IT~~~~s~La~~aD 147 (177)
T cd05006 99 GQPGDVLIGISTSG--NSPNVLKALEAA-KERGMKTIALTGRDGGKLLELAD 147 (177)
T ss_pred CCCCCEEEEEeCCC--CCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCC
Confidence 45678887776433 233444455555 4589999998543 344343433
No 273
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=51.35 E-value=5.6 Score=40.81 Aligned_cols=53 Identities=13% Similarity=-0.045 Sum_probs=30.7
Q ss_pred cccccccc--cccccCcccccccccccccccceeeeeeeccCCCCCcEEEEEECCEEEEEec
Q 009859 36 SELSGNVI--DICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILP 95 (523)
Q Consensus 36 ~~~~Gn~i--dvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~ 95 (523)
|.-||.|+ ++||++|+.... ..+ .....-|..|...|...+-.-+++-+.++.
T Consensus 304 Ci~Cg~C~~~~aCPt~AI~~~~------~Id-~~~Ci~CGaCV~aCP~~AI~~~~~~itvee 358 (391)
T TIGR03287 304 CENCDPCLVEEACPVPAIKKDG------TLN-TEDCFGCGYCAEICPGGAFEVNLGSVRVEG 358 (391)
T ss_pred CcCCCCCcCCcCCCHhhEeccc------eeC-hHhCcChHHHHhhCCccceEEeCCeEeecc
Confidence 77899995 999999997321 001 012334555667787644433344445543
No 274
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=51.11 E-value=3.1 Score=36.03 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.6
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||.+|+..+
T Consensus 61 Ci~C~~C~~~CP~~ai~~~ 79 (133)
T PRK09625 61 CINCFNCWVYCPDAAILSR 79 (133)
T ss_pred CcChhhHHHhCCHhheEec
Confidence 5678999999999998643
No 275
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.06 E-value=10 Score=40.37 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=36.6
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
.+-+.++++|.||... ++-++..-+|++|+..++|+..||..||...-
T Consensus 169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~PG 225 (461)
T cd02750 169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPG 225 (461)
T ss_pred hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccCCC
Confidence 5679999999998531 11123346788899999999999999998743
No 276
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=50.89 E-value=83 Score=27.79 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=28.8
Q ss_pred Cccccc--cCCEEEEEcCCCCc---chhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 208 SISGLE--KADCFLLVGTQPRV---EAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 208 ~~~di~--~ad~il~~G~n~~~---~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
++.++. +.|.|++.|..... ..|.+...+++..+ ++..|..|..
T Consensus 52 ~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~-~~~~i~~ic~ 100 (166)
T TIGR01382 52 TIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVE-KGKPVAAICH 100 (166)
T ss_pred ChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHH-cCCEEEEECh
Confidence 445543 68999999975322 23556667777765 7778777753
No 277
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=50.79 E-value=27 Score=33.03 Aligned_cols=46 Identities=30% Similarity=0.364 Sum_probs=30.5
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCc
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 258 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~ 258 (523)
..++++|++|++|+.... .|. .++-..++++|++++.|++..+..-
T Consensus 160 ~~~~~~dl~lvlGTsl~v-~p~--~~l~~~~~~~~~~~i~iN~~~~~~~ 205 (224)
T cd01412 160 EALAKADLFLVIGTSGVV-YPA--AGLPEEAKERGARVIEINPEPTPLS 205 (224)
T ss_pred HHHHcCCEEEEECcCccc-hhH--HHHHHHHHHCCCeEEEECCCCCCCC
Confidence 345689999999965443 342 2333323358999999999766543
No 278
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=50.64 E-value=10 Score=44.04 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=36.6
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
.+.+.++++|+||... ++.++.--||++|+..|+|+..||+.||...
T Consensus 223 ~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirP 278 (912)
T TIGR03479 223 FNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRV 278 (912)
T ss_pred hcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCC
Confidence 4689999999998531 1223444678889999999999999999873
No 279
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=50.46 E-value=8.9 Score=34.30 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.8
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.+.-||.|+++||.+|+.-.+
T Consensus 96 ~C~~C~~C~~aCP~~ai~~~~ 116 (161)
T TIGR02951 96 KCIGCRYCVWACPYGAPQYDP 116 (161)
T ss_pred hCCCchHHHhhCCCCCcEEcC
Confidence 366789999999999998665
No 280
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=50.09 E-value=3.6 Score=37.09 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.5
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+++||++|++...
T Consensus 114 ~Ci~Cg~C~~aCp~~ai~~~~ 134 (165)
T TIGR01944 114 NCIGCTKCIQACPVDAIVGAA 134 (165)
T ss_pred cCCChhHHHHhCCccceEecC
Confidence 366899999999999987653
No 281
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=50.00 E-value=6.4 Score=36.61 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=24.1
Q ss_pred cccccccccCcccccccccccccccc-eeeeeee---ccCCCCCcEEEE
Q 009859 40 GNVIDICPVGALTSKPFAFKARNWEL-KGTETID---VTDAVGSNIRID 84 (523)
Q Consensus 40 Gn~idvCPvGAlt~k~~~~~aR~Wel-~~~~siC---~~C~~gC~i~v~ 84 (523)
=.|++||||||+.-+. .=-+ ..-...| .+|..+|...+-
T Consensus 75 ppCv~vCPtgA~~k~~------~dGiV~vd~d~CIGC~yCi~ACPyga~ 117 (203)
T COG0437 75 PPCVKVCPTGALFKRE------EDGIVLVDKDLCIGCGYCIAACPYGAP 117 (203)
T ss_pred CcccccCCCcceEEec------CCCEEEecCCcccCchHHHhhCCCCCc
Confidence 4799999999985442 0111 1223445 556688977664
No 282
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=49.91 E-value=59 Score=30.19 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=24.6
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
...-|+++++... .+.+.+...++.+ +++|+++|.|-...
T Consensus 107 ~~~gDvli~iS~S--G~s~~v~~a~~~A-k~~G~~vI~IT~~~ 146 (196)
T PRK10886 107 GHAGDVLLAISTR--GNSRDIVKAVEAA-VTRDMTIVALTGYD 146 (196)
T ss_pred CCCCCEEEEEeCC--CCCHHHHHHHHHH-HHCCCEEEEEeCCC
Confidence 3456777777543 2334444445555 45999999996543
No 283
>PRK09939 putative oxidoreductase; Provisional
Probab=48.99 E-value=48 Score=37.69 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=34.0
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCc------------------ccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDH------------------GVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~------------------ta~~ADvvLP~a~ 400 (523)
.+.+.++++|.||... ++.++..-||++|+..++ |+..||+.||...
T Consensus 207 ~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irP 280 (759)
T PRK09939 207 EKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRI 280 (759)
T ss_pred hhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCC
Confidence 5678999999998531 122334468899997643 6789999998763
No 284
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=48.80 E-value=35 Score=37.77 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=35.6
Q ss_pred cCccEEEEEcCCCCCC------------CCCCCCceEEEEcccCCcccC-cceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL------------EKLPNDAFVVYQGHHGDHGVY-RANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~------------~~l~~~~fvV~~d~~~t~ta~-~ADvvLP~a~ 400 (523)
.+-+.++++|.||... ++.++..-+|++|+..|+|+. .||+.||...
T Consensus 165 ~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~irP 224 (617)
T cd02770 165 KDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIPIRP 224 (617)
T ss_pred hcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEECCCC
Confidence 4679999999998521 111234468899999999996 8999999764
No 285
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=48.69 E-value=4.4 Score=32.79 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=18.0
Q ss_pred CCceEecCCCCCcCcccccccccccccCcccc
Q 009859 22 SGEEIGTYVEKLMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 22 ~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~ 53 (523)
.|..|.+.. +..-.--|+.+||+||++.
T Consensus 23 ~HI~i~~~~----~~~~~k~C~~aCPagA~~~ 50 (95)
T PRK15449 23 PHIVVKADA----DKQALELLVKACPAGLYKK 50 (95)
T ss_pred CcEEEcCCC----CchhhhHHHHHCCHhhcEe
Confidence 555554332 2223458999999999953
No 286
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=48.46 E-value=26 Score=33.53 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=29.9
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
..+++||++|++|+..... |. . .+-+.++ +|+++++|++..+.
T Consensus 171 ~~~~~aDlllvvGTSl~V~-pa-~-~l~~~~~-~~~~~v~iN~~~~~ 213 (235)
T cd01408 171 EDKEEADLLIVIGTSLKVA-PF-A-SLPSRVP-SEVPRVLINREPVG 213 (235)
T ss_pred HHHhcCCEEEEECCCCeec-cH-H-HHHHHHh-CCCcEEEEeCCCCC
Confidence 4467899999999976553 42 2 2333444 68999999987654
No 287
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=48.29 E-value=8.5 Score=39.65 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred ccccceeeeecCCCCceEec--------CCCCCcCcccccccccccccCccccc
Q 009859 9 VAGVQDLGMLGRGSGEEIGT--------YVEKLMTSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 9 ~~g~~~lg~~~rg~~~~i~~--------~~~~~~~~~~~Gn~idvCPvGAlt~k 54 (523)
.+|.+.-|-..-|.--.+-+ +.+.+.-|.+||.|-+||||.==.++
T Consensus 325 ~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~Ipl~e 378 (459)
T COG1139 325 HIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVKIPLPE 378 (459)
T ss_pred hccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCCCCHHH
Confidence 35666665555554333322 22334558899999999999754443
No 288
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=48.00 E-value=1.1e+02 Score=29.88 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+. ++|.+++.+....-..++..+| ..+|-+.... ... ... ......+..-|++|+
T Consensus 116 ~~l~~~~~~i~~a--~~I~i~G~G~s~~~A~~~~~~l-~~~g~~~~~~-~d~----~~~------~~~~~~~~~~Dv~I~ 181 (278)
T PRK11557 116 EKLHECVTMLRSA--RRIILTGIGASGLVAQNFAWKL-MKIGINAVAE-RDM----HAL------LATVQALSPDDLLLA 181 (278)
T ss_pred HHHHHHHHHHhcC--CeEEEEecChhHHHHHHHHHHH-hhCCCeEEEc-CCh----HHH------HHHHHhCCCCCEEEE
Confidence 5666777777665 4676666554322222333333 3455433221 100 000 012345667788888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+.-... .+-+...++.+. ++|+++++|-...
T Consensus 182 iS~sg~--~~~~~~~~~~ak-~~ga~iI~IT~~~ 212 (278)
T PRK11557 182 ISYSGE--RRELNLAADEAL-RVGAKVLAITGFT 212 (278)
T ss_pred EcCCCC--CHHHHHHHHHHH-HcCCCEEEEcCCC
Confidence 854332 233444455554 5999999997643
No 289
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=47.97 E-value=5 Score=42.08 Aligned_cols=19 Identities=16% Similarity=-0.195 Sum_probs=10.6
Q ss_pred eeeccCCCCCcEEEEEECC
Q 009859 70 TIDVTDAVGSNIRIDSRGP 88 (523)
Q Consensus 70 siC~~C~~gC~i~v~vr~g 88 (523)
.-|..|...|...+..+++
T Consensus 234 i~C~~Cv~vCP~gi~~~~~ 252 (434)
T TIGR02745 234 IDCNLCVQVCPTGIDIRDG 252 (434)
T ss_pred CChhhhHHhCCCCCEeCCC
Confidence 3455566667655555554
No 290
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=47.51 E-value=10 Score=37.25 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=10.2
Q ss_pred cccccccccCccccc
Q 009859 40 GNVIDICPVGALTSK 54 (523)
Q Consensus 40 Gn~idvCPvGAlt~k 54 (523)
+=|..+||+||+.+-
T Consensus 179 ~wC~~lCP~Ga~~~~ 193 (271)
T PRK09477 179 GWCGHLCPLGAFYGL 193 (271)
T ss_pred chhhccCCHHHHHHh
Confidence 457777777777654
No 291
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=47.31 E-value=11 Score=36.57 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|-.||.|+++||++||.-.
T Consensus 61 Ci~Cg~Cv~aCP~~aI~~~ 79 (254)
T PRK09476 61 CIRCGLCVQACPYDTLKLA 79 (254)
T ss_pred CcCchHHHHhCCccccCcc
Confidence 6679999999999999754
No 292
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=47.31 E-value=82 Score=31.03 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+. .+|.+++.+....-..++..+|. .+|-+...... . .... .....+..-|++|+
T Consensus 128 ~~l~~~~~~i~~A--~~I~i~G~G~S~~~A~~l~~~l~-~~g~~~~~~~d-~-----~~~~-----~~~~~~~~~Dl~I~ 193 (292)
T PRK11337 128 DEFHRAARFFYQA--RQRDLYGAGGSAAIARDVQHKFL-RIGVRCQAYDD-A-----HIML-----MSAALLQEGDVVLV 193 (292)
T ss_pred HHHHHHHHHHHcC--CeEEEEEecHHHHHHHHHHHHHh-hCCCeEEEcCC-H-----HHHH-----HHHhcCCCCCEEEE
Confidence 5566666666654 35665554433222233344444 35543322111 0 0000 01233556788777
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
+.-. ..+ +-+...++. ++++|+++++|-...
T Consensus 194 iS~s-G~t-~~~~~~~~~-ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 194 VSHS-GRT-SDVIEAVEL-AKKNGAKIICITNSY 224 (292)
T ss_pred EeCC-CCC-HHHHHHHHH-HHHCCCeEEEEeCCC
Confidence 7532 222 333333444 456999999996543
No 293
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=47.24 E-value=37 Score=32.28 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=30.6
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCc
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 258 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~ 258 (523)
..++++|++|++|+.. .-.|.. ++-+.++ +|+++++|++..+..-
T Consensus 167 ~~~~~~DlllviGTSl-~v~p~~--~l~~~~~-~~~~~i~iN~~~~~~~ 211 (225)
T cd01411 167 QAIEKADLLVIVGTSF-VVYPFA--GLIDYRQ-AGANLIAINKEPTQLD 211 (225)
T ss_pred HHHhcCCEEEEECcCC-eehhHH--HHHHHHh-CCCeEEEECCCCCCCC
Confidence 4567899999999854 334543 2333333 7999999999766543
No 294
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=46.78 E-value=43 Score=36.25 Aligned_cols=111 Identities=11% Similarity=-0.048 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCC-Cc---c-chhhhhhcCccc-CCCccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEG-TG---A-QSNADLRSGYIM-NTSISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~-~~---~-~~~~~~~~~~~~-~~~~~d 211 (523)
-+++++.+++.|.+.+ +..++.|... ..+....+.+|++.+|.+.+.+.. .. + .+...+|..... .....-
T Consensus 192 ~~~~~~~~~~~L~~Ak--rPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~ 269 (530)
T PRK07092 192 DPAALARLGDALDAAR--RPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISAL 269 (530)
T ss_pred CHHHHHHHHHHHHcCC--CcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHH
Confidence 3577888899888763 5666666533 223455689999999998874322 11 1 111112211000 011235
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
++++|+||.+|++.......-.. ... ....+++.||....
T Consensus 270 l~~aDlvl~lG~~~~~~~~~~~~---~~~-~~~~~~i~id~d~~ 309 (530)
T PRK07092 270 LDGHDLVLVIGAPVFTYHVEGPG---PHL-PEGAELVQLTDDPG 309 (530)
T ss_pred HhhCCEEEEECCcccccccCCcc---ccC-CCCCeEEEEeCChH
Confidence 67999999999864332110000 001 23578888887543
No 295
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=46.54 E-value=34 Score=32.17 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=31.7
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 257 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t 257 (523)
..+.++|++|++|...... | ...-++.+. ++|.++++|++..+..
T Consensus 165 ~~~~~~d~llviGtSl~v~-~-~~~l~~~~~-~~~~~~~~in~~~~~~ 209 (222)
T cd00296 165 EALLEADLVLVIGTSLTVY-P-AARLLLRAP-ERGAPVVIINREPTPA 209 (222)
T ss_pred HHHhcCCEEEEECCCcccc-C-HHHHHHHHH-HCCCcEEEECCCCCCC
Confidence 4556899999999977642 2 333444444 4899999999976543
No 296
>PRK12474 hypothetical protein; Provisional
Probab=46.07 E-value=42 Score=36.26 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCC------ccchhhhhhcCcccCCCccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGT------GAQSNADLRSGYIMNTSISG 211 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d 211 (523)
.+++++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+..... -..+..+ ...+.......-
T Consensus 187 ~~~~i~~~~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~-~~~~~~~~~~~~ 263 (518)
T PRK12474 187 AAETVERIAALLRNGK--KSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIE-RIPYFHEQITAF 263 (518)
T ss_pred CHHHHHHHHHHHHcCC--CcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCc-ccccchHHHHHH
Confidence 3688999999998874 4555555433 2223456789999999987643210 0000000 000000011134
Q ss_pred cccCCEEEEEcCCC
Q 009859 212 LEKADCFLLVGTQP 225 (523)
Q Consensus 212 i~~ad~il~~G~n~ 225 (523)
+++||+||.+|+..
T Consensus 264 ~~~aDlvl~lG~~~ 277 (518)
T PRK12474 264 LKDVEQLVLVGAKP 277 (518)
T ss_pred HhhCCEEEEECCCC
Confidence 68999999999875
No 297
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=45.90 E-value=2.2e+02 Score=25.36 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=61.0
Q ss_pred HHHHHHhcCCCCEEEEeCCC-CcHHHHHHHHHHHHHcCCCccccCCCccc-hhhhhhcC---------cccCCCcccc--
Q 009859 146 VAEVMLQAKPEEIVGIAGRL-SDAESMMALKDFLNRMGSNNVWCEGTGAQ-SNADLRSG---------YIMNTSISGL-- 212 (523)
Q Consensus 146 ia~~L~~~~~~~i~~~~g~~-~~~e~~~~~~~l~~~lG~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~di-- 212 (523)
++..++.++ +-..+.|+. .+.|......+|.+.+.-+.+.+...... .+...++. +....++..+
T Consensus 28 ~ammIkkAk--rPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg 105 (170)
T COG1880 28 VAMMIKKAK--RPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG 105 (170)
T ss_pred HHHHHHhcC--CceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC
Confidence 344445543 333455554 45666777888888776655544433211 11222211 1111223333
Q ss_pred -ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCC
Q 009859 213 -EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTG 266 (523)
Q Consensus 213 -~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~ 266 (523)
-+-|++|+.|+-....+.++ ..++.. ...+-+.||+.+.+.+....+..+
T Consensus 106 ~g~yDlviflG~~~yy~sq~L-s~lKhF---s~i~tiaId~~Y~pnAd~SFpNl~ 156 (170)
T COG1880 106 NGNYDLVIFLGSIYYYLSQVL-SGLKHF---SNIKTIAIDRYYQPNADYSFPNLS 156 (170)
T ss_pred CCCcceEEEEeccHHHHHHHH-HHhhhh---hcceEEEeccccCcCccccCCCcC
Confidence 47899999998654433221 223333 356778899988777666655444
No 298
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.87 E-value=13 Score=40.05 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 402 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~ 402 (523)
.+.+.++++|.||... ++.++..-+|++|+..+.|+..||..||...-.
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGt 212 (512)
T cd02753 155 EEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQLRPGT 212 (512)
T ss_pred HhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeCCCCCc
Confidence 4678999999998531 122334468999999999999999999976543
No 299
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=45.79 E-value=10 Score=39.03 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 009859 140 RDALAVVAEVMLQ 152 (523)
Q Consensus 140 deAl~~ia~~L~~ 152 (523)
..|++ ++++||+
T Consensus 371 ~ra~~-~~~~lk~ 382 (391)
T TIGR03287 371 KRAKK-LAEELKE 382 (391)
T ss_pred HHHHH-HHHHHHH
Confidence 45554 3444544
No 300
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=45.53 E-value=73 Score=35.64 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=37.2
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 402 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~ 402 (523)
.+.+.++++|.||... ++.++..-+|++|+..+.|+..||..||...-.
T Consensus 154 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~i~Pgt 211 (671)
T TIGR01591 154 ENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIPLKPGT 211 (671)
T ss_pred HhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccCCCCCc
Confidence 4578999999998641 122344568888999999999999999866544
No 301
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=45.37 E-value=7.4 Score=38.02 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=16.5
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|+-||.|+++||.|++.-.
T Consensus 170 ~C~~C~~C~~~CP~~vi~~~ 189 (263)
T PRK00783 170 DCDECEKCVEACPRGVLELK 189 (263)
T ss_pred cCCchHHHHHhCCccccEec
Confidence 36779999999999998654
No 302
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=45.24 E-value=9.1 Score=38.83 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.2
Q ss_pred cCcccccccccccccCcc
Q 009859 34 MTSELSGNVIDICPVGAL 51 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAl 51 (523)
..|..||.|+++||+|-=
T Consensus 307 ~~CvgCGrC~~~CP~~I~ 324 (344)
T PRK15055 307 HMCVGCGRCDDRCPEYIS 324 (344)
T ss_pred hhCcCcCccccccCCCCC
Confidence 348899999999999853
No 303
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=6.2 Score=29.36 Aligned_cols=12 Identities=67% Similarity=1.207 Sum_probs=10.0
Q ss_pred ccccccccCccc
Q 009859 41 NVIDICPVGALT 52 (523)
Q Consensus 41 n~idvCPvGAlt 52 (523)
.+|+-||.|||+
T Consensus 59 ~vi~sCPSGAl~ 70 (74)
T COG3592 59 KVIDTCPSGALK 70 (74)
T ss_pred HHHHhCCchhhh
Confidence 467889999996
No 304
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.07 E-value=14 Score=40.27 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=37.2
Q ss_pred cCccEEEEEcCCCCCC---------CCCCC--CceEEEEcccCCcccCcceEEecCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPN--DAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~--~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
.+.+.++++|.||... ++.++ ..-+|++|+..|+|+..||..||...-
T Consensus 156 ~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PG 214 (565)
T cd02754 156 EHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPG 214 (565)
T ss_pred hhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCC
Confidence 4689999999998631 11223 457899999999999999999987753
No 305
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=44.29 E-value=8 Score=39.30 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=17.1
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+.+||.+|+...
T Consensus 215 ~Ci~Cg~Ci~~CP~~a~~~~ 234 (341)
T TIGR02066 215 KCIYCGNCYTMCPAMPIFDP 234 (341)
T ss_pred cCCcCCchHHhCchhhccCC
Confidence 47789999999999998644
No 306
>PF03243 MerB: Alkylmercury lyase; InterPro: IPR004927 Mercury is a highly toxic metal. Toxicity can result from three different mercurial forms: elemental, inorganic ion and organomercurial compounds. The ability of bacteria to detoxify mercurial compounds by reduction and volatilisation is conferred by the Mer genes, which are usually plasmid encoded (although chromosome resistance determinants have also occasionally been identified) []. Organomercurial lyase (MerB), also known as alkylmercury lyase, mediates the first of the two steps in the microbial detoxification of organomercurial salts (the other catalysed by mercuric reductase). Organomercurial lyase catalyses the protonolysis of the C-Hg bond in a wide range of organomercurial salts (primary, secondary, tertiary, alkyl, vinyl, allyl and aryl) to Hg(II) and the respective organic compound []: RHg(+) + H(+) = RH + Hg(2+) Hg(II) is subsequently detoxified by mercuric reductase. The enzyme has been purified to homogeneity in Escherichia coli and has been found to be a 22.4kDa monomer with no detectable cofactors or metal ions.; GO: 0018836 alkylmercury lyase activity, 0046413 organomercury catabolic process; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=43.94 E-value=27 Score=29.91 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=39.7
Q ss_pred eeeeeeeccCCCCCcEEEEEECCEEEEEecCCCC-----C----CCccccccccccccCCCC--CCCCCCcEEeCCCCCe
Q 009859 66 KGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNE-----D----INEEWISDKTRFCYDGLK--SQRLNDPMIRGADGRF 134 (523)
Q Consensus 66 ~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~-----~----~n~~~lC~kGr~~~~~~~--~~Rl~~Pl~R~g~g~~ 134 (523)
-.+.|.|+.| |..|++.++++++..+.|..-- + -.....|.--+|.-..-. .-+-.+| .. .|
T Consensus 36 ~~I~S~cp~t--g~pI~l~v~~~~i~~~~P~~~vV~~~~~~~~~~~~~~~C~~i~fF~s~~~a~~W~~~~p--~~-~g-- 108 (127)
T PF03243_consen 36 ARIESRCPAT--GEPIRLTVDPGGITDVEPATAVVSFVDPDAGADVRSSFCPYIHFFASEEAAEAWLAEHP--DE-GG-- 108 (127)
T ss_dssp EEEEEE-TTT----EEEEEE-SSSEEEEESTT-EEEE----TTS-HHHHTGGG-EEESSHHHHHHHHHTTT--ST-T---
T ss_pred EEEEEcCCCC--CCeEEEEEeCCceeecCCCCEEEEecCccccCCccccCCCcEEecCCHHHHHHHHHHCC--CC-Ce--
Confidence 4688999988 7899999999999998874210 0 112345655555332111 1133344 11 23
Q ss_pred eEcCHHHHHHHHHH
Q 009859 135 KAVNWRDALAVVAE 148 (523)
Q Consensus 135 ~~isWdeAl~~ia~ 148 (523)
.-++-+||++...+
T Consensus 109 ~il~v~ea~~l~~~ 122 (127)
T PF03243_consen 109 QILSVEEAFELARA 122 (127)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred EEEeHHHHHHHHHH
Confidence 66777888854433
No 307
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=43.71 E-value=11 Score=34.11 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=29.2
Q ss_pred cccccccccCcccccccccccccccceeeeeee-ccCCCCCcEEEEE
Q 009859 40 GNVIDICPVGALTSKPFAFKARNWELKGTETID-VTDAVGSNIRIDS 85 (523)
Q Consensus 40 Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC-~~C~~gC~i~v~v 85 (523)
=-||+-|||+|+.-++-.+..---++-.--..| ..|...|.-..-+
T Consensus 121 tkCiqaCpvdAivg~~~~mhtv~~dlCTGC~lCva~CPtdci~m~~~ 167 (198)
T COG2878 121 TKCIQACPVDAIVGATKAMHTVIADLCTGCDLCVAPCPTDCIEMQPV 167 (198)
T ss_pred HHHHHhCChhhhhccchhHHHHHHHHhcCCCcccCCCCCCceeeeec
Confidence 368888888888877755553334556666666 4577777544433
No 308
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=43.61 E-value=7.2 Score=37.14 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=18.0
Q ss_pred CCcCcccccccccccccCcccc
Q 009859 32 KLMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt~ 53 (523)
+...|.+++||.++||.|-=+.
T Consensus 196 gv~~C~~~~~C~~vCPK~i~p~ 217 (234)
T COG0479 196 GVWRCTTCGNCTEVCPKGIPPA 217 (234)
T ss_pred CEecccccccccccCCCCCCHH
Confidence 4567999999999999986543
No 309
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=43.44 E-value=53 Score=32.43 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=31.4
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcc
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYD 259 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~ 259 (523)
..++++|++|++|++.... |. ....+.+. ++|.+++.|++..+..-.
T Consensus 210 ~~~~~~DlllvvGTSl~V~-p~-~~~~~~a~-~~g~~~i~IN~~~t~~~~ 256 (285)
T PRK05333 210 AALDAADAVLVVGSSLMVY-SG-YRFCVWAA-QQGKPIAALNLGRTRADP 256 (285)
T ss_pred HHHhcCCEEEEECcCceec-ch-hhhHHHHH-HCCCeEEEECCCCCCCCc
Confidence 4567899999999986553 21 12233343 478899999987655433
No 310
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.08 E-value=1.3e+02 Score=25.85 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=22.0
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEE
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYI 250 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~i 250 (523)
++..-|++|++-..= .+|.+-..++.|+ ++|+++|.|
T Consensus 100 ~~~~gDvli~iS~SG--~s~~vi~a~~~Ak-~~G~~vIal 136 (138)
T PF13580_consen 100 DIRPGDVLIVISNSG--NSPNVIEAAEEAK-ERGMKVIAL 136 (138)
T ss_dssp T--TT-EEEEEESSS---SHHHHHHHHHHH-HTT-EEEEE
T ss_pred CCCCCCEEEEECCCC--CCHHHHHHHHHHH-HCCCEEEEE
Confidence 367789988886533 3355555566664 599999986
No 311
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=42.74 E-value=11 Score=36.47 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=16.5
Q ss_pred CCcCcccccccccccccCcc
Q 009859 32 KLMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAl 51 (523)
....|..||+|.++||.|--
T Consensus 201 gl~~C~~C~~C~~vCP~~I~ 220 (244)
T PRK12385 201 GVWSCTFVGYCSEVCPKHVD 220 (244)
T ss_pred hhhhCcCcccccccCCCCCC
Confidence 44578899999999999754
No 312
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=42.47 E-value=15 Score=40.99 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=26.1
Q ss_pred CcccccccccccccCcccccccccccccccceeeeeeeccCC
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA 76 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~ 76 (523)
.|.-||.|+++||.+|+.-...... +...+.....|.+|.
T Consensus 86 ~C~~C~~C~~~CP~~ai~~~~~~~~--~~~~~~~~~~C~~C~ 125 (654)
T PRK12769 86 KCIGCKSCVVACPFGTMQIVLTPVA--AGKVKATAHKCDLCA 125 (654)
T ss_pred cccCcChhcccCCccCeeecccCCc--ccceeeecCcCcCCC
Confidence 4677999999999999975543222 222334445676665
No 313
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=42.29 E-value=7.1 Score=37.77 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.6
Q ss_pred CcccccccccccccCcc
Q 009859 35 TSELSGNVIDICPVGAL 51 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAl 51 (523)
.|-.||-|.++||+...
T Consensus 153 ~CI~CG~C~saCP~~~~ 169 (249)
T PRK08640 153 KCMTCGCCLEACPNVNE 169 (249)
T ss_pred hccCcCcccccCCCCcc
Confidence 47789999999998865
No 314
>PRK07586 hypothetical protein; Validated
Probab=41.99 E-value=55 Score=35.29 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCC--cc-chhh-hhhcCcccCC-Ccccc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGT--GA-QSNA-DLRSGYIMNT-SISGL 212 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~--~~-~~~~-~~~~~~~~~~-~~~di 212 (523)
-+++++.+++.|.+.+ +..++.|... .......+.+|++.+|.+.+..... .+ ..+. ........+. ...-+
T Consensus 183 ~~~~v~~~~~~L~~A~--rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~ 260 (514)
T PRK07586 183 DPAAVEAAAAALRSGE--PTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQL 260 (514)
T ss_pred CHHHHHHHHHHHHhcC--CCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHH
Confidence 4678999999998874 4555665432 2234456889999999987642110 00 0000 0000000010 12346
Q ss_pred ccCCEEEEEcCCC
Q 009859 213 EKADCFLLVGTQP 225 (523)
Q Consensus 213 ~~ad~il~~G~n~ 225 (523)
++||+||.+|+..
T Consensus 261 ~~aDlvl~vG~~~ 273 (514)
T PRK07586 261 AGVRHLVLVGAKA 273 (514)
T ss_pred hcCCEEEEECCCC
Confidence 8999999999874
No 315
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=41.93 E-value=6.6 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=25.2
Q ss_pred cccccccccccccCcccccccccccccccc
Q 009859 36 SELSGNVIDICPVGALTSKPFAFKARNWEL 65 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel 65 (523)
|.-|++||.-|||+.++=.|-..+.+.|..
T Consensus 147 CTGC~lCva~CPtdci~m~~~~~~~~~~kw 176 (198)
T COG2878 147 CTGCDLCVAPCPTDCIEMQPVAETPDRWKW 176 (198)
T ss_pred hcCCCcccCCCCCCceeeeecccchhhccc
Confidence 455899999999999999998887777654
No 316
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=41.76 E-value=76 Score=32.60 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=34.6
Q ss_pred cCccEEEEEcCCCCCC---------CCCCC-CceEEEEcccCCcccCcceEEecCCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPN-DAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~-~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
.+-+.++++|.||... ++.++ ..-+|++|+..++| .||..+|....
T Consensus 147 ~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg 202 (386)
T cd02768 147 EEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL 202 (386)
T ss_pred hhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence 4678999999998641 12222 45789999999999 89998887765
No 317
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=41.46 E-value=10 Score=40.04 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=14.7
Q ss_pred CcccccccccccccCcc
Q 009859 35 TSELSGNVIDICPVGAL 51 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAl 51 (523)
.|--||.|.++||++.+
T Consensus 364 ~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 364 PCIRCGKCVQVCPMNLL 380 (435)
T ss_pred cCcCccchhhhCccchh
Confidence 46789999999999965
No 318
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=41.38 E-value=8.8 Score=37.49 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.7
Q ss_pred CcCcccccccccccccCcccc
Q 009859 33 LMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~ 53 (523)
...|.+||.|++.||.+|+.-
T Consensus 198 ~~~C~~C~~Ci~~CP~~AI~i 218 (263)
T PRK00783 198 LLNCSLCKLCERACPGKAIRV 218 (263)
T ss_pred hhhCCCchHHHHhCCCCceEE
Confidence 446889999999999998853
No 319
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=41.12 E-value=39 Score=24.70 Aligned_cols=26 Identities=12% Similarity=0.025 Sum_probs=17.1
Q ss_pred eee-ccCCCCCcEEEEEECCEEEEEec
Q 009859 70 TID-VTDAVGSNIRIDSRGPEVMRILP 95 (523)
Q Consensus 70 siC-~~C~~gC~i~v~vr~g~v~rv~~ 95 (523)
.+| .-|.+||.|.-+|++|.+.-+-|
T Consensus 18 G~~~TrC~CGa~ItGhVknG~mri~gp 44 (62)
T PF08300_consen 18 GVMHTRCPCGAVITGHVKNGSMRIYGP 44 (62)
T ss_dssp EEEEEE-TTS-EEEEEEETTEEEEE--
T ss_pred CEEEecCCCCCEEeEEEeCCeEEEecC
Confidence 444 35889999999999999864434
No 320
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=40.70 E-value=39 Score=36.81 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|..... ....+..|+..++.
T Consensus 190 i~~aa~~L~~AkrPvIl~G~G~~~a~----a~~~l~~lae~~~~ 229 (550)
T COG0028 190 IRKAAELLAEAKRPVILAGGGVRRAG----ASEELRELAEKLGA 229 (550)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccc----cHHHHHHHHHHHCC
Confidence 45778999999999999999988653 23444556666543
No 321
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=40.70 E-value=2.1e+02 Score=28.43 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEE
Q 009859 142 ALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLV 221 (523)
Q Consensus 142 Al~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~ 221 (523)
-+..+++.|...+ ++|.+++.+....-..++..+|. .+|-+...... ... .......+..-|+++++
T Consensus 30 ~~~~~~~~l~~~~-~~I~i~G~G~S~~~A~~~~~~l~-~~g~~~~~~~~------~~~-----~~~~~~~~~~~d~~i~i 96 (321)
T PRK11543 30 DFVRAANIILHCE-GKVVVSGIGKSGHIGKKIAATLA-STGTPAFFVHP------AEA-----LHGDLGMIESRDVMLFI 96 (321)
T ss_pred HHHHHHHHHHhcC-CcEEEEecChhHHHHHHHHHHHH-cCCCceeecCh------HHH-----hhCCcCccCCCCEEEEE
Confidence 4666666665431 36776666654443444444444 46654332211 000 00122445666888777
Q ss_pred cCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 222 GTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 222 G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
...- ++ +-+-..++.+ +++|++++.|-..
T Consensus 97 S~sG-~t-~~~~~~~~~a-k~~g~~vI~iT~~ 125 (321)
T PRK11543 97 SYSG-GA-KELDLIIPRL-EDKSIALLAMTGK 125 (321)
T ss_pred eCCC-Cc-HHHHHHHHHH-HHcCCeEEEEECC
Confidence 5432 22 2333445554 4599999999664
No 322
>PRK08764 ferredoxin; Provisional
Probab=40.60 E-value=12 Score=32.48 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.9
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|..||.|+++||++|+...
T Consensus 86 ~Ci~C~~Cv~aCp~~ai~~~ 105 (135)
T PRK08764 86 DCIGCTKCIQACPVDAIVGG 105 (135)
T ss_pred cCcCcchHHHhCChhhcCcc
Confidence 46789999999999999643
No 323
>PRK07586 hypothetical protein; Validated
Probab=40.46 E-value=39 Score=36.41 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=29.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|.... .....+..|+..+|.
T Consensus 187 v~~~~~~L~~A~rPvi~~G~g~~~~----~a~~~l~~lae~l~~ 226 (514)
T PRK07586 187 VEAAAAALRSGEPTVLLLGGRALRE----RGLAAAARIAAATGA 226 (514)
T ss_pred HHHHHHHHHhcCCCEEEeCCcccch----hHHHHHHHHHHHHCC
Confidence 3567789999999999999998753 234455667776654
No 324
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=40.35 E-value=2.4e+02 Score=32.18 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=36.9
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCc-chhcc
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY-DHQHL 263 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~-~~a~~ 263 (523)
.+-+.++++|.||..+.|.. .+++++.+ +---+|++|+..+.|+ ..||+
T Consensus 536 g~ikal~v~g~Np~~s~p~~-~~~~~aL~-kl~f~Vv~d~f~teTa~~~ADv 585 (776)
T PRK09129 536 QPRKAYLLLNVEPELDCADP-AQARAALN-QAEFVVALSAFASKATLDYADV 585 (776)
T ss_pred CCcCEEEEeCCCccccccCH-HHHHHHHh-cCCeEEEEeeecCcchhhcCCE
Confidence 35689999999999988754 45666653 3234889999999998 78873
No 325
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=40.23 E-value=17 Score=33.18 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=29.1
Q ss_pred CcCccccc--ccccccccCcccccccccccccccceeeeeeeccCCCCCcEEE
Q 009859 33 LMTSELSG--NVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRI 83 (523)
Q Consensus 33 ~~~~~~~G--n~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~v 83 (523)
+..|-.|+ .|+++||+||+.-..-... .+ ...-.-|..|...|...+
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~~~~v~---i~-~~~C~~C~~C~~~CP~~a 103 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRDKGFVH---VM-QERCIGCKTCVVACPYGA 103 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEccCCeEE---eC-hhhCCCcchhhhhCCccC
Confidence 34566788 7999999999865431111 11 123356888888886433
No 326
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=40.18 E-value=9.2 Score=35.38 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.0
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|-.||.|++.||++|+...
T Consensus 115 ~Ci~Cg~Cv~aCp~~ai~~~ 134 (191)
T PRK05113 115 NCIGCTKCIQACPVDAIVGA 134 (191)
T ss_pred cCCCCChhhhhCCHhhhecc
Confidence 36689999999999998654
No 327
>PRK12474 hypothetical protein; Provisional
Probab=39.88 E-value=40 Score=36.42 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.2
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+..+. .....+..|+..+|.
T Consensus 191 i~~~~~~L~~A~rPvil~G~g~~~~----~a~~~l~~lae~~g~ 230 (518)
T PRK12474 191 VERIAALLRNGKKSALLLRGSALRG----APLEAAGRIQAKTGV 230 (518)
T ss_pred HHHHHHHHHcCCCcEEEECCccchh----hHHHHHHHHHHHHCC
Confidence 4567899999999999999998653 234455666766654
No 328
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=39.76 E-value=1.1e+02 Score=34.70 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=33.5
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCc------------------ccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDH------------------GVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~------------------ta~~ADvvLP~a~ 400 (523)
.+.+.++++|.||... ++.++..-||++|+..++ ++..||..||...
T Consensus 197 ~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irP 270 (743)
T TIGR01701 197 EHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRI 270 (743)
T ss_pred HhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCC
Confidence 4679999999999641 122344568888987654 3788999998763
No 329
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.68 E-value=18 Score=39.24 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=38.1
Q ss_pred ccCccEEEEEcCCCCCCC-----------CCCCCceEEEEcccCCcccCcceEEecCCCCCC
Q 009859 353 IESAKFVYLMGADDVDLE-----------KLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 403 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~~-----------~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E 403 (523)
-.+-+.++++|.||+... +-++..-+|++|+..+.|+..||..||...-.+
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD 221 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGED 221 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcH
Confidence 357799999999985310 112345678889999999999999999875433
No 330
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=39.67 E-value=2.1e+02 Score=23.76 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=27.4
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
...+.+-|++|++...- + .+-....++.+ +++|++++.|-...
T Consensus 42 ~~~~~~~d~vi~iS~sG-~-t~~~~~~~~~a-~~~g~~vi~iT~~~ 84 (128)
T cd05014 42 LGMVTPGDVVIAISNSG-E-TDELLNLLPHL-KRRGAPIIAITGNP 84 (128)
T ss_pred cCcCCCCCEEEEEeCCC-C-CHHHHHHHHHH-HHCCCeEEEEeCCC
Confidence 45566778888886432 2 23344455555 45899999996643
No 331
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=39.51 E-value=12 Score=23.27 Aligned_cols=18 Identities=39% Similarity=0.933 Sum_probs=12.9
Q ss_pred cccccccccccCcccccccccccccccc
Q 009859 38 LSGNVIDICPVGALTSKPFAFKARNWEL 65 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~k~~~~~aR~Wel 65 (523)
-||.| +||-|-+ ||||||
T Consensus 18 ~~G~C--L~~~~~~--------A~PWEm 35 (35)
T PF08115_consen 18 CCGSC--LCSNGPH--------ARPWEM 35 (35)
T ss_pred cccce--eccCCcc--------CCcccC
Confidence 46777 5776654 899996
No 332
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=39.50 E-value=6.7 Score=43.88 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=28.4
Q ss_pred CcccccccccccccCcccccccccccc---cc--cceeeeeeeccCCCCCcEEEE
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFKAR---NW--ELKGTETIDVTDAVGSNIRID 84 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~aR---~W--el~~~~siC~~C~~gC~i~v~ 84 (523)
.|--||.|+.+||++.-....-.+..+ +. .+....+.|..|..-|.-.+.
T Consensus 405 rCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtgIp 459 (781)
T PRK00941 405 KCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKNIP 459 (781)
T ss_pred hCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCCCC
Confidence 466799999999998432221111100 00 112356667778888976653
No 333
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=39.34 E-value=1.6e+02 Score=25.83 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=28.4
Q ss_pred Cccccc--cCCEEEEEcCCCCc---chhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 208 SISGLE--KADCFLLVGTQPRV---EAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 208 ~~~di~--~ad~il~~G~n~~~---~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
++.+.. +.|.+++.|..... ..+.+...|+++.+ ++..|+.|..
T Consensus 54 ~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~-~~~~i~~ic~ 102 (165)
T cd03134 54 TIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAE-AGKPVAAICH 102 (165)
T ss_pred ChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHH-cCCeEEEEch
Confidence 345543 57999999974211 23455666777765 7888887763
No 334
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=38.98 E-value=62 Score=32.21 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=77.8
Q ss_pred CCCeeEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCcc
Q 009859 131 DGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSIS 210 (523)
Q Consensus 131 ~g~~~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (523)
.|..-+-+|.+.+..+.+. .+-++.|-+.-+++..-+..+++..|..-+|.+...... .+.+ | ...
T Consensus 43 ~GG~lp~~w~~~i~~Ai~~-------Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~DvR~p~~~~--~~~~----g-~~~ 108 (301)
T PF07755_consen 43 AGGRLPPSWRPVILEAIEA-------GLDIVSGLHDFLSDDPELAAAAKKNGVRIIDVRKPPKDL--PVAS----G-RIR 108 (301)
T ss_dssp TTHCCHCCHHHHHHHHHHT-------T-EEEE-SSS-HCCHHHHHCCHHCCT--EEETTS--SS-----------S-GGG
T ss_pred CCCcCCHHHHHHHHHHHHc-------CCCEEecChhhhccCHHHHHHHHHcCCeEeeccCCCccc--cccc----C-ccc
Confidence 3445667887766555442 333455544333344456777788888777766542111 1111 1 112
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCHHH-HHHHHcC-cHHHHHHHhcCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKT-LLEIAEG-RHPFFSAISNAK 288 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~~~-l~~~~~g-i~~~a~~l~~a~ 288 (523)
+ -++..|+++|.|-..---.....|+++.+++|.+...+....|--.- +.-|.-.+. ..+++.| ++.+.....+.+
T Consensus 109 ~-~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimi-a~~Gv~iDav~~DFvaGavE~~v~~~~~~~ 186 (301)
T PF07755_consen 109 E-VKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMI-AGYGVPIDAVPSDFVAGAVEALVPEAAEEH 186 (301)
T ss_dssp G--SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHC-HSEC--GGGSBGGGHHHHHHHHHHHHCCC-
T ss_pred c-CCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEE-ecCCeeccchhhhhHHHHHHHHHHhhCcCC
Confidence 2 27899999999987776566777888888899998888754332111 221211110 0111122 233333333333
Q ss_pred CcEEEEcCCcccccCHHH
Q 009859 289 NPVIIVGAGLFERKDKDA 306 (523)
Q Consensus 289 ~~~ii~g~~~~~~~~~~~ 306 (523)
--++|=|+|...||....
T Consensus 187 d~ivVEGQgsL~hPay~g 204 (301)
T PF07755_consen 187 DWIVVEGQGSLSHPAYSG 204 (301)
T ss_dssp SEEEEE--S-TTSTTTHH
T ss_pred CEEEEeccccccCccccc
Confidence 455566999888876543
No 335
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=38.58 E-value=8.2 Score=43.11 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=27.3
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 52 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt 52 (523)
+|+++|-.-.-...|....++.+..--.. -..++|.-||.|..+||.+--.
T Consensus 377 ~Cv~aCP~~llP~~l~~~~~~~d~~~~~~-~~~~~CieCG~C~~vCPs~Ipl 427 (695)
T PRK05035 377 ACADACPASLLPQQLYWFAKAEEHDKAQE-YNLFDCIECGACAYVCPSNIPL 427 (695)
T ss_pred cHHHHCCccchhhhHHHhhhccccchhhh-cChhhccccCcccccCCCCCcH
Confidence 47777765444333332233222111111 1234677799999999998433
No 336
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=38.33 E-value=14 Score=36.77 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=14.2
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||.||+.-.
T Consensus 164 CiGCg~Cv~ACPygAi~~n 182 (321)
T TIGR03478 164 CKGYRYCVEACPYKKVYFN 182 (321)
T ss_pred CcchHHHHHhCCCCCcEec
Confidence 3457888888888887644
No 337
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=38.25 E-value=37 Score=35.02 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=30.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHH
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTV 311 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~ 311 (523)
|+++|+.+..+|+|++++|.|...++++-.++.-.
T Consensus 288 i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~f 322 (675)
T KOG4166|consen 288 IEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRF 322 (675)
T ss_pred HHHHHHHHHhccCceEEeCcccccCCcchHHHHHH
Confidence 68899999999999999999999999987655443
No 338
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=38.10 E-value=11 Score=37.17 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.0
Q ss_pred cccccccccccccCcc
Q 009859 36 SELSGNVIDICPVGAL 51 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAl 51 (523)
|.-||.|+++||.||+
T Consensus 126 CigC~~Cv~aCP~~a~ 141 (283)
T TIGR01582 126 CIGCGYCIVGCPFNIP 141 (283)
T ss_pred CCcchHHHhhCCCCCc
Confidence 5568888888888886
No 339
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=38.09 E-value=16 Score=34.94 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=17.0
Q ss_pred CCcCcccccccccccccCccc
Q 009859 32 KLMTSELSGNVIDICPVGALT 52 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt 52 (523)
....|..||+|.++||.|.-.
T Consensus 196 ~i~~C~~Cg~C~~~CP~gi~~ 216 (232)
T PRK05950 196 GVFRCHTIMNCVEVCPKGLNP 216 (232)
T ss_pred ccccCcCcCCcCccccCCCCH
Confidence 346788999999999998643
No 340
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=37.94 E-value=16 Score=35.19 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=17.5
Q ss_pred CCCcCcccccccccccccCccc
Q 009859 31 EKLMTSELSGNVIDICPVGALT 52 (523)
Q Consensus 31 ~~~~~~~~~Gn~idvCPvGAlt 52 (523)
+....|..||+|.++||.|--.
T Consensus 203 ~gi~~C~~C~~C~~vCPk~I~~ 224 (239)
T PRK13552 203 DGVFGCMSLLGCEDNCPKDLPL 224 (239)
T ss_pred CCcCCCcCcCccchhCCCCCcH
Confidence 3456788999999999987643
No 341
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=37.83 E-value=95 Score=35.63 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.4
Q ss_pred cCccEEEEEcCCCCCC---------CCC-CCCceEEEEcccCCcc-cCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKL-PNDAFVVYQGHHGDHG-VYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l-~~~~fvV~~d~~~t~t-a~~ADvvLP~a~ 400 (523)
.+.+.++++|+||... .+. ++..-+|++|+..+++ +++||..||...
T Consensus 375 e~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irP 432 (797)
T PRK07860 375 EKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAP 432 (797)
T ss_pred HhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCC
Confidence 4678999999998641 121 2344688999999986 578999998653
No 342
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=37.49 E-value=11 Score=29.97 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=13.8
Q ss_pred cccccccccccccCccc
Q 009859 36 SELSGNVIDICPVGALT 52 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt 52 (523)
|.=||-|.++||+-|+.
T Consensus 68 CKGCGICa~vCP~kaI~ 84 (91)
T COG1144 68 CKGCGICANVCPVKAIE 84 (91)
T ss_pred ccCceechhhCChhheE
Confidence 55689999999997763
No 343
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.99 E-value=3.1e+02 Score=24.58 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 219 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 219 (523)
++.++.+++.|.+. ++|.+++.+.+..-..++..+| ..+|-+...... . ....+..-|++|
T Consensus 20 ~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~D~vI 80 (179)
T cd05005 20 EEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRL-MHLGLNVYVVGE--------T--------TTPAIGPGDLLI 80 (179)
T ss_pred HHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHH-HhCCCeEEEeCC--------C--------CCCCCCCCCEEE
Confidence 46677778888765 4676655443322222333333 234543221110 0 123456778888
Q ss_pred EEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 220 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 220 ~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
++...... +-+...++.+ +++|++++.|-..
T Consensus 81 ~iS~sG~t--~~~i~~~~~a-k~~g~~iI~IT~~ 111 (179)
T cd05005 81 AISGSGET--SSVVNAAEKA-KKAGAKVVLITSN 111 (179)
T ss_pred EEcCCCCc--HHHHHHHHHH-HHCCCeEEEEECC
Confidence 88654332 3334445555 4589999988653
No 344
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=36.81 E-value=3.5e+02 Score=25.11 Aligned_cols=98 Identities=14% Similarity=0.309 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+-|..+++-+..+.+..|.+++... ....+.+++++..|+..+..+ |-.+...|........-|+|++
T Consensus 47 ~~L~~A~~~i~~i~~~~ILfVgtk~---~~~~~V~~~A~~~g~~~v~~R---------WlgGtLTN~~~~~~~~Pdlliv 114 (196)
T TIGR01012 47 ERLRVAAKFLVRIEPEDILVVSARI---YGQKPVLKFAKVTGARAIAGR---------FTPGTFTNPMQKAFREPEVVVV 114 (196)
T ss_pred HHHHHHHHHHHHhhCCeEEEEecCH---HHHHHHHHHHHHhCCceECCe---------eCCCCCCCccccccCCCCEEEE
Confidence 4556666666666566776665543 234568889988887543221 1111112222344567888888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEE-EcCCCCCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGY-IGPATDLN 257 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~-idp~~~~t 257 (523)
+ ||..++ ..+++|.+ -|..+|. +|+..+++
T Consensus 115 ~--dp~~~~----~Av~EA~~-l~IP~Iai~DTn~dp~ 145 (196)
T TIGR01012 115 T--DPRADH----QALKEASE-VGIPIVALCDTDNPLR 145 (196)
T ss_pred E--CCcccc----HHHHHHHH-cCCCEEEEeeCCCCCc
Confidence 6 566554 35778765 7777764 57666554
No 345
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=36.61 E-value=8.7 Score=42.95 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=27.5
Q ss_pred CcccccccccccccC-----cccccccccccccccceeeeeeeccCCCCCcEEEE
Q 009859 35 TSELSGNVIDICPVG-----ALTSKPFAFKARNWELKGTETIDVTDAVGSNIRID 84 (523)
Q Consensus 35 ~~~~~Gn~idvCPvG-----Alt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~v~ 84 (523)
.|--||.|+.+||++ ++..................+.|..|..-|...+.
T Consensus 400 kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~gIp 454 (784)
T TIGR00314 400 KCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKNIP 454 (784)
T ss_pred cCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCCCC
Confidence 577899999999988 32211100000111122345667777788876553
No 346
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=36.55 E-value=19 Score=34.92 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.9
Q ss_pred CcCcccccccccccccCcccc
Q 009859 33 LMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~ 53 (523)
...|..||+|.++||.|.-..
T Consensus 199 l~~C~~C~~C~~vCPkgI~~~ 219 (251)
T PRK12386 199 LGYCNITKCCTEVCPEHIKIT 219 (251)
T ss_pred cccCcCCCCcCCcCCCCcChh
Confidence 445888999999999987543
No 347
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=36.54 E-value=12 Score=39.21 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=16.0
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.|.-||.|+++||.||+.-
T Consensus 215 kCiGCg~CV~ACPygAI~~ 233 (492)
T TIGR01660 215 KCRGWRMCISGCPYKKIYF 233 (492)
T ss_pred hccChHHHHHhCCCCCcEe
Confidence 4677899999999999753
No 348
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=36.46 E-value=16 Score=35.44 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=27.6
Q ss_pred ccccccccee-eeecCCCCceEecCCCCCcCcccccccccccccCcccc
Q 009859 6 ATEVAGVQDL-GMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 6 ~~e~~g~~~l-g~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~ 53 (523)
|..+.-..++ +..+|....++... ..-.|.-||.|+++||+++..+
T Consensus 174 C~~~CP~Ga~~~~~~~~~~~~i~~~--~~~~C~~C~~C~~vCP~~~vl~ 220 (255)
T TIGR02163 174 CGHLCPLGAFYGLIGRKSLIKIAAS--DREKCTNCMDCFNVCPEPQVLR 220 (255)
T ss_pred hhCcCCCcchhhhhhccCceEEEee--ccccCeEcCCccCcCCCCceee
Confidence 3333333433 55566555555432 1235778999999999998543
No 349
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=35.88 E-value=24 Score=40.24 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=36.4
Q ss_pred cCccEEEEEcCCCCCC----------CCC-CCCceEEEEcccCCcccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL----------EKL-PNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~----------~~l-~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
.+-+.++++|+||... ++. ++..-+|++|+..++|+..||+.||...
T Consensus 195 ~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~P 252 (759)
T PRK15488 195 ANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRP 252 (759)
T ss_pred hhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCC
Confidence 4678999999998531 112 2344678999999999999999999774
No 350
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=35.52 E-value=13 Score=33.39 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.9
Q ss_pred cccccccccccccCccccccc
Q 009859 36 SELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~ 56 (523)
|-=||-|+.+||.||++-..+
T Consensus 84 CiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 84 CIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred ccCcchhhhcCCcceEEEEee
Confidence 456899999999999987765
No 351
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=35.39 E-value=10 Score=34.79 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=31.8
Q ss_pred cccccccccccccCccccccccc---ccc----ccc----ceeeeeeeccCCCCCcEEE
Q 009859 36 SELSGNVIDICPVGALTSKPFAF---KAR----NWE----LKGTETIDVTDAVGSNIRI 83 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~---~aR----~We----l~~~~siC~~C~~gC~i~v 83 (523)
|--||-|...||+|=.|+=+.|- ++| -|. .-|..+.|..|.-.|.-.|
T Consensus 41 C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v 99 (195)
T COG1150 41 CYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGV 99 (195)
T ss_pred hhccCcccCCCCCcccCCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCC
Confidence 67799999999999986544221 111 132 2367788888888885433
No 352
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=35.35 E-value=17 Score=34.85 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.5
Q ss_pred CcCcccccccccccccCccc
Q 009859 33 LMTSELSGNVIDICPVGALT 52 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt 52 (523)
...|..||+|.++||.|--.
T Consensus 200 l~~C~~C~~C~~vCPkgI~~ 219 (235)
T PRK12575 200 LFRCRTIMNCVDVCPKGLNP 219 (235)
T ss_pred cccccCcchhccccCCCCcH
Confidence 45688899999999998643
No 353
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=35.24 E-value=1.6e+02 Score=26.91 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=29.6
Q ss_pred Ccccc--ccCCEEEEEcCCC----CcchhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 208 SISGL--EKADCFLLVGTQP----RVEAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 208 ~~~di--~~ad~il~~G~n~----~~~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
++.++ ++.|.|++.|... ....|.+..++++..+ +|..|..|..
T Consensus 58 ~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~-~g~~v~aic~ 107 (196)
T PRK11574 58 PLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHR-SGRIVAAICA 107 (196)
T ss_pred CHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHH-CCCEEEEECH
Confidence 45555 4689999998642 1234556677887764 8888887763
No 354
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=35.07 E-value=26 Score=39.91 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=35.7
Q ss_pred cCccEEEEEcCCCCCC-----------------CCCCCCceEEEEcccCCcccCcc-eEEecCCC
Q 009859 354 ESAKFVYLMGADDVDL-----------------EKLPNDAFVVYQGHHGDHGVYRA-NVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~-----------------~~l~~~~fvV~~d~~~t~ta~~A-DvvLP~a~ 400 (523)
.+.+.++++|.||... ++.++..-+|++|+..|+||..| |+.||...
T Consensus 166 ~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~irP 230 (770)
T TIGR00509 166 ENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIPPNP 230 (770)
T ss_pred hcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeCcCC
Confidence 4689999999998531 01123456899999999999985 89999764
No 355
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=34.90 E-value=17 Score=40.46 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=25.4
Q ss_pred CcCcccccc--cccccccCcccccccccccccccceeeeeeeccCCCCCcE
Q 009859 33 LMTSELSGN--VIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 81 (523)
Q Consensus 33 ~~~~~~~Gn--~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i 81 (523)
+..|..|++ |+++||+||+.-.+... ..+ .....-|..|...|..
T Consensus 53 ~~~C~~C~~~~C~~~CP~~ai~~~~~~v---~~d-~~~C~gC~~C~~~CP~ 99 (639)
T PRK12809 53 PVACHHCNNAPCVTACPVNALTFQSDSV---QLD-EQKCIGCKRCAIACPF 99 (639)
T ss_pred CCCCcCcCChhHHhhCCcCceeccccce---ecC-hhhCcchhhHhhhcCC
Confidence 345777887 88999999887543111 011 1122345556666764
No 356
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=34.89 E-value=3.3e+02 Score=27.15 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEE
Q 009859 142 ALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLV 221 (523)
Q Consensus 142 Al~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~ 221 (523)
.|+.+++.|.... ++|.+++.+....-..++..+|. .+|-+...... ..+.. .....+.+-|++|++
T Consensus 35 ~l~~~~~~l~~a~-~~I~i~G~G~S~~~a~~~~~~l~-~~g~~~~~~~~------~~~~~-----~~~~~~~~~d~~I~i 101 (326)
T PRK10892 35 DFTLACEKMFWCK-GKVVVMGMGKSGHIGRKMAATFA-STGTPSFFVHP------GEAAH-----GDLGMVTPQDVVIAI 101 (326)
T ss_pred HHHHHHHHHHhcC-CeEEEEeCcHhHHHHHHHHHHHh-cCCceeEEeCh------HHhhc-----cccccCCCCCEEEEE
Confidence 4666666665431 36766665544332334444443 46654433211 01110 012345566777777
Q ss_pred cCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 222 GTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 222 G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
...- +.+-+-..++.+ +++|+++++|-...
T Consensus 102 S~sG--~t~~~~~~~~~a-k~~g~~vi~iT~~~ 131 (326)
T PRK10892 102 SNSG--ESSEILALIPVL-KRLHVPLICITGRP 131 (326)
T ss_pred eCCC--CCHHHHHHHHHH-HHCCCcEEEEECCC
Confidence 5433 223344445555 45899999996643
No 357
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=34.63 E-value=13 Score=37.27 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.8
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|..||+|+++||++|+..+
T Consensus 202 ~C~~Cg~Cv~~CP~~Al~~~ 221 (314)
T TIGR02912 202 KCIGCGECVLKCPTGAWTRS 221 (314)
T ss_pred cCcCcchhhhhCCHhhcccC
Confidence 57788888888888888654
No 358
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=34.58 E-value=14 Score=38.44 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=25.4
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEc
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~id 251 (523)
+..+++++.|+-...-.|-....+.+...+.|..+ ++.
T Consensus 160 ~~~~v~~f~gC~~~~~~p~~~~a~~~lL~~~G~~v-~~~ 197 (396)
T PRK11168 160 YKKQVAYFHGCYVNYNHPQLGKDLVKVLNAMGYEV-LLP 197 (396)
T ss_pred CCCeEEEECccccccCCcHHHHHHHHHHHHCCCEE-EcC
Confidence 45689999998766666655554444444578888 553
No 359
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=34.49 E-value=18 Score=15.93 Aligned_cols=7 Identities=57% Similarity=1.412 Sum_probs=4.6
Q ss_pred ccccccC
Q 009859 43 IDICPVG 49 (523)
Q Consensus 43 idvCPvG 49 (523)
|.-||.|
T Consensus 3 i~nCP~G 9 (9)
T PF00220_consen 3 IRNCPIG 9 (9)
T ss_pred cccCCCC
Confidence 4567776
No 360
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=34.27 E-value=25 Score=40.95 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.0
Q ss_pred CcccccccccccccCcccccccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFK 59 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~ 59 (523)
.|.-||||+.+||+++ +||.-|
T Consensus 927 ~C~~CG~C~~~CP~~~---~py~dk 948 (1019)
T PRK09853 927 MCNECGNCAQFCPWNG---KPYKDK 948 (1019)
T ss_pred cCccccchhhhCCCCC---Cccccc
Confidence 4778999999999976 477766
No 361
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=34.17 E-value=48 Score=36.00 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=38.7
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
+-+.++++|+||..+.|-. .+++++.+ +---+|++|+..|.|+..+|+
T Consensus 377 ~ik~l~~~~~Np~~~~p~~-~~~~~al~-~ldf~V~~D~~~teTa~~ADi 424 (539)
T cd02762 377 RIRAMIVVAGNPVLSAPDG-ARLEAALG-GLEFMVSVDVYMTETTRHADY 424 (539)
T ss_pred ceEEEEEeCCCccccCCCH-HHHHHHHh-cCCeEEEeecccCcchhhCCE
Confidence 4678999999999999875 57788765 333578999999999999883
No 362
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=34.07 E-value=18 Score=32.38 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=17.6
Q ss_pred CcCccccc--ccccccccCccccc
Q 009859 33 LMTSELSG--NVIDICPVGALTSK 54 (523)
Q Consensus 33 ~~~~~~~G--n~idvCPvGAlt~k 54 (523)
+..|..|+ .|+.+||+|||...
T Consensus 61 ~~~C~~C~~~~C~~~CP~~ai~~~ 84 (161)
T TIGR02951 61 SISCNHCADPACVKNCPTGAMYKR 84 (161)
T ss_pred CccCCCcCCcchHHhCCCCCEEee
Confidence 34567888 79999999999754
No 363
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=34.00 E-value=50 Score=35.87 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=30.0
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|..++.- ...+..|+..+|.
T Consensus 191 v~~~~~~l~~AkrPvi~~G~g~~~~~a----~~~l~~lae~~~~ 230 (535)
T TIGR03394 191 ADEVLARMRSATSPVMMVCVEVRRYGL----EAKVAELAQRLGV 230 (535)
T ss_pred HHHHHHHHHhCCCCEEEEChhhcccCc----HHHHHHHHHHhCC
Confidence 467889999999999999999875532 3445667776654
No 364
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=33.92 E-value=56 Score=35.76 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=29.7
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+..... ....+..|+..+|.
T Consensus 203 l~~~~~~L~~AkrPvIi~G~g~~~~~----a~~~l~~lae~l~i 242 (569)
T PRK09259 203 VDRALDLLKKAKRPLIILGKGAAYAQ----ADEQIREFVEKTGI 242 (569)
T ss_pred HHHHHHHHHhCCCCEEEECcCccccC----hHHHHHHHHHHHCC
Confidence 45678899999999999999987542 34455667776654
No 365
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=33.63 E-value=1.4e+02 Score=31.85 Aligned_cols=141 Identities=12% Similarity=-0.016 Sum_probs=76.3
Q ss_pred CCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHH-HHHHHHHHHHcCCCccccCCCc---cc
Q 009859 119 SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAES-MMALKDFLNRMGSNNVWCEGTG---AQ 194 (523)
Q Consensus 119 ~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~-~~~~~~l~~~lG~~~~~~~~~~---~~ 194 (523)
+.|+..|+.-.. -.-.+..-++|.+.+++.+...+.. ++++++..+.+. ...+++|++++|.+.+.+...- ..
T Consensus 179 ~~l~~~p~~~~~-~~s~~e~~~~~v~~i~e~i~~~~~P--vil~~~~~~r~~~~~~~~~l~~~~~~p~~vtp~gKg~i~E 255 (561)
T KOG1184|consen 179 FGLLPVPLDLSP-KPSNKEGLEEAVDAILELINKAKKP--VILGDPKLRRAKAESAFVELADATGFPVFVTPMGKGFIPE 255 (561)
T ss_pred ccCCCCCcccCC-CCCcHHHHHHHHHHHHHHhhhccCC--eeeccccccHHHHHHHHHHHHHhhCCCeeEeecccccccC
Confidence 457888864421 0113345568888888888776533 345665544332 2357889999998887654432 11
Q ss_pred hhhhhhcCcccCCC----ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCH
Q 009859 195 SNADLRSGYIMNTS----ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGP 267 (523)
Q Consensus 195 ~~~~~~~~~~~~~~----~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~ 267 (523)
....++..|+...+ .+-++-+|+|+..|....+-+...+... . +..+++.++|.+-..-.....|.+.
T Consensus 256 ~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~---~--k~~~~i~~~~d~v~i~~~~f~~v~m 327 (561)
T KOG1184|consen 256 SHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYL---Y--KKKNAIEFHSDRVKIRNATFGGVLM 327 (561)
T ss_pred cCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEee---c--CccceEEEecceEEeccccccceeH
Confidence 11223333322112 2345789999999987665443322211 1 2456777777543322233344443
No 366
>PRK06154 hypothetical protein; Provisional
Probab=33.41 E-value=57 Score=35.73 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|...... ...+..|+..+|.
T Consensus 204 i~~aa~~L~~A~rPvil~G~g~~~~~a----~~~l~~lae~l~~ 243 (565)
T PRK06154 204 VVEAAALLLAAERPVIYAGQGVLYAQA----TPELKELAELLEI 243 (565)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCh----HHHHHHHHHHhCC
Confidence 456789999999999999999875422 3345566666543
No 367
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=33.35 E-value=20 Score=31.33 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=18.5
Q ss_pred CcCcccccccccccccCcccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
...|-.||.|.++||+|.-+..-
T Consensus 45 ~~~C~~Cg~C~~~CP~~i~~~~~ 67 (144)
T TIGR03290 45 LWMCTTCYTCQERCPRDVKITDI 67 (144)
T ss_pred CCcCcCcCchhhhcCCCCCHHHH
Confidence 34678899999999999876544
No 368
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=33.13 E-value=57 Score=35.74 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=28.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+....... ..+..|+..+|.
T Consensus 210 ~~~~~~~L~~AkrPvi~~G~g~~~~~a~----~~l~~lae~l~~ 249 (569)
T PRK08327 210 IARAAEMLAAAERPVIITWRAGRTAEGF----ASLRRLAEELAI 249 (569)
T ss_pred HHHHHHHHHhCCCCEEEEecccCCcccH----HHHHHHHHHhCC
Confidence 3466789999999999999998765333 344556666544
No 369
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.12 E-value=57 Score=35.89 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=29.1
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+..... ....+..|+..+|.
T Consensus 211 i~~~~~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~~g~ 250 (587)
T PRK06965 211 IRKAVSLLLSAKRPYIYTGGGVILAN----ASRELRQLADLLGY 250 (587)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccc----hHHHHHHHHHHhCC
Confidence 45678899999999999999987542 23445566666654
No 370
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=32.87 E-value=9.3 Score=40.17 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.1
Q ss_pred CCCcCcccccccccccccCcccc
Q 009859 31 EKLMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 31 ~~~~~~~~~Gn~idvCPvGAlt~ 53 (523)
...+.|--||.|..+|||-..+.
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~~~g 312 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYRHIG 312 (432)
T ss_pred hhHhhCCCCCCccccCcchhccC
Confidence 44567889999999999876543
No 371
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.31 E-value=59 Score=35.62 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=28.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+...... ...+..|+..+|.
T Consensus 204 ~~~~~~~L~~A~rPvIl~G~g~~~~~a----~~~l~~lae~~~~ 243 (570)
T PRK06725 204 LREVAKAISKAKRPLLYIGGGVIHSGG----SEELIEFARENRI 243 (570)
T ss_pred HHHHHHHHHcCCCcEEEECCCccccch----HHHHHHHHHHhCC
Confidence 346788999999999999999865422 3345556666544
No 372
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=32.13 E-value=63 Score=35.23 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+...... ...+..|+..+|.
T Consensus 196 ~~~~~~~L~~AkrPvi~~G~g~~~~~a----~~~l~~lae~~~~ 235 (554)
T TIGR03254 196 VDRAVELLKDAKRPLILLGKGAAYAQA----DEEIREFVEKTGI 235 (554)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCh----HHHHHHHHHHHCC
Confidence 356788999999999999999875422 3345566666654
No 373
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=32.10 E-value=58 Score=36.06 Aligned_cols=40 Identities=18% Similarity=0.381 Sum_probs=28.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|.... + ....+..|+..+|.
T Consensus 214 v~~~~~~L~~AkrPvI~~G~g~~~~-~---a~~~l~~lae~l~~ 253 (616)
T PRK07418 214 INAALKLIEEAERPLLYVGGGAISA-G---AHAELKELAERFQI 253 (616)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCcc-c---HHHHHHHHHHHHCC
Confidence 4567899999999999999998533 2 23445566666654
No 374
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=31.98 E-value=56 Score=35.94 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=29.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.+++++|.+|++|+|+.|.|..... ....+..|+..+|.
T Consensus 192 i~~~~~~L~~AkrPvIl~G~g~~~~~----a~~~l~~lae~~g~ 231 (588)
T TIGR01504 192 IEKAVEMLNAAERPLIVAGGGVINAD----AADLLQEFAELTGV 231 (588)
T ss_pred HHHHHHHHHhCCCcEEEECCCcchhh----hHHHHHHHHHHhCC
Confidence 35678899999999999999987542 34455667776654
No 375
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=31.86 E-value=63 Score=35.35 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=28.8
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
++++++.|.+|++|+|++|.+..+.. ....+..|+..+|.
T Consensus 201 i~~~~~~L~~AkrPvIl~G~g~~~~~----a~~~l~~lae~~~~ 240 (564)
T PRK08155 201 IRDAAAMINAAKRPVLYLGGGVINSG----APARARELAEKAQL 240 (564)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccc----hHHHHHHHHHHHCC
Confidence 35667899999999999999986542 23455666666654
No 376
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=31.85 E-value=18 Score=35.59 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.2
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|-.||.|.++||+.+..
T Consensus 153 ~CI~CG~C~~~CP~~~~~ 170 (279)
T PRK12576 153 QCIWCGLCVSACPVVAID 170 (279)
T ss_pred hCcccCcccccCCCcccc
Confidence 477899999999998654
No 377
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=31.71 E-value=13 Score=38.88 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=34.6
Q ss_pred ccCccEEEEEcCCCCCC----------CCCCCCceEEEEcccCCcccCcceEEecCCCCCC
Q 009859 353 IESAKFVYLMGADDVDL----------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 403 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~----------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E 403 (523)
-.+.+.++++|.||... +..++...+|++|+..++|+..||..||...-.+
T Consensus 109 ~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD 169 (432)
T PF00384_consen 109 IENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTD 169 (432)
T ss_dssp GGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTH
T ss_pred eeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhcccccccccccc
Confidence 35678999999998531 1234446789999999999999999999765443
No 378
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=31.69 E-value=61 Score=35.50 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=29.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+..... ...++..|+..+|.
T Consensus 197 ~~~~~~~L~~A~rPvil~G~g~~~~~----a~~~l~~lae~~~~ 236 (572)
T PRK06456 197 LKKAAEILINAERPIILVGTGVVWSN----ATPEVLELAELLHI 236 (572)
T ss_pred HHHHHHHHHhCCCcEEEECCCCcccc----hHHHHHHHHHHhCC
Confidence 34667889999999999999986542 23556677777654
No 379
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=31.62 E-value=1.6e+02 Score=32.78 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=25.9
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
.+..-|++|++...- ++ +-+...++.+ +++|++++.|-...+.
T Consensus 512 ~l~~~DvvI~iS~sG-~t-~e~i~~~~~A-k~~Ga~vIaIT~~~sp 554 (638)
T PRK14101 512 LLGKGDVIVAVSKSG-RA-PELLRVLDVA-MQAGAKVIAITSSNTP 554 (638)
T ss_pred cCCCCCEEEEEeCCC-CC-HHHHHHHHHH-HHCCCeEEEEcCCCCh
Confidence 456678888875432 22 2333444454 4689999999764333
No 380
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=31.55 E-value=1e+02 Score=32.87 Aligned_cols=107 Identities=20% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCC---CCcHHHHHHHHHHHHHcCCCccccCCCccch---hhhhhcCcccCCC---c-
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGR---LSDAESMMALKDFLNRMGSNNVWCEGTGAQS---NADLRSGYIMNTS---I- 209 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~---~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~---~- 209 (523)
.|+++.+++.|+..+ +..++.+. +...+ ..+++|+++.+.+++.....-... .-.|...|+-..+ +
T Consensus 196 ~e~i~~i~~lI~~ak--~p~ILad~~~~r~~~~--~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vr 271 (557)
T COG3961 196 SEVIDTIAELINKAK--KPVILADALVSRFGLE--KELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVR 271 (557)
T ss_pred HHHHHHHHHHHhccC--CcEEecchhhhhhhhH--HHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHH
Confidence 466677777776543 44555553 33333 358899999888776543321111 0112222211112 2
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
+-+|.||+||.+|.-..+.+...+. ... +-.+++-++|...
T Consensus 272 e~vE~aD~il~iG~~ltD~~Tg~Ft---~~~--~~~~~i~~~~~~v 312 (557)
T COG3961 272 EAVESADLILTIGVLLTDFNTGGFT---YQY--KPANIIEIHPDSV 312 (557)
T ss_pred HHhhcCCEEEEeceEEeecccccee---eec--CcccEEEeccCee
Confidence 3468999999999987765543222 111 3367888888653
No 381
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=31.55 E-value=62 Score=35.29 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=29.1
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
++++++.|.+|++|+|+.|.+..... ....+..|+..+|.
T Consensus 191 i~~~~~~L~~AkrPvi~~G~g~~~~~----a~~~l~~lae~l~~ 230 (558)
T TIGR00118 191 IKKAAELINLAKKPVILVGGGVIIAG----ASEELKELAERIQI 230 (558)
T ss_pred HHHHHHHHHhCCCcEEEECCCccccc----hHHHHHHHHHHhCC
Confidence 45678999999999999999986432 23455666666654
No 382
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.39 E-value=66 Score=35.16 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=28.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+..... ....+..|+..+|.
T Consensus 193 i~~~~~~L~~A~rPviv~G~g~~~~~----a~~~l~~lae~~~~ 232 (563)
T PRK08527 193 IKKAAEAIKEAKKPLFYLGGGAILSN----ASEEIRELVKKTGI 232 (563)
T ss_pred HHHHHHHHHcCCCCEEEECCCccccc----hHHHHHHHHHHHCC
Confidence 35678899999999999999986542 23445556666543
No 383
>PRK05858 hypothetical protein; Provisional
Probab=31.07 E-value=65 Score=35.02 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=29.0
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+.... ++ ..++..|+..+|.
T Consensus 193 i~~~~~~L~~AkrPvil~G~g~~~~-~a---~~~l~~lae~lg~ 232 (542)
T PRK05858 193 LARAAGLLAEAQRPVIMAGTDVWWG-HA---EAALLRLAEELGI 232 (542)
T ss_pred HHHHHHHHHhCCCcEEEECCCcccc-Ch---HHHHHHHHHHhCC
Confidence 3566789999999999999988543 22 3456667777654
No 384
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=30.78 E-value=22 Score=34.22 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.0
Q ss_pred CcCcccccc--cccccccCcccc
Q 009859 33 LMTSELSGN--VIDICPVGALTS 53 (523)
Q Consensus 33 ~~~~~~~Gn--~idvCPvGAlt~ 53 (523)
+..|.-|++ |+.+||+||+..
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~ 119 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQ 119 (244)
T ss_pred chhcCCcCCccCccccCCCCEEE
Confidence 345777998 999999999854
No 385
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=30.76 E-value=65 Score=35.27 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|..... ....+..|+..+|.
T Consensus 200 i~~~~~~L~~A~rPvil~G~g~~~~~----a~~~l~~lae~l~~ 239 (566)
T PRK07282 200 IKKILKQLSKAKKPVILAGGGINYAE----AATELNAFAERYQI 239 (566)
T ss_pred HHHHHHHHHcCCCcEEEECCCcCccc----HHHHHHHHHHHhCC
Confidence 45678999999999999999986432 23445566666654
No 386
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=30.73 E-value=69 Score=33.83 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHH
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTV 311 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~ 311 (523)
|.++++.|++||+|++++|.|..-.+...++.+++
T Consensus 207 i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~V 241 (571)
T KOG1185|consen 207 IQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFV 241 (571)
T ss_pred HHHHHHHHHhcCCcEEEEecccccCccHHHHHHHH
Confidence 45668999999999999999987655444444444
No 387
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.53 E-value=66 Score=35.14 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=29.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
++++++.|.+|++|+|++|.+..... ....+..|+..+|.
T Consensus 197 i~~~a~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~lg~ 236 (561)
T PRK06048 197 IKRAAELIMKAERPIIYAGGGVISSN----ASEELVELAETIPA 236 (561)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccc----HHHHHHHHHHHhCC
Confidence 45678999999999999999986532 24455667776654
No 388
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=30.45 E-value=68 Score=35.19 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+...... ...+..|+..+|.
T Consensus 186 i~~~~~~L~~A~rP~i~~G~g~~~~~a----~~~l~~lae~~~~ 225 (579)
T TIGR03457 186 LAQAARLLAEAKFPVIISGGGVVMGDA----VEECKALAERLGA 225 (579)
T ss_pred HHHHHHHHHhCCCCEEEECcCccccCh----HHHHHHHHHHhCC
Confidence 356789999999999999999865432 3345566666654
No 389
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=30.31 E-value=23 Score=34.88 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=16.7
Q ss_pred CCcCcccccccccccccCcc
Q 009859 32 KLMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAl 51 (523)
....|..||+|.++||.|--
T Consensus 204 ~i~~C~~Cg~C~~~CP~~I~ 223 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPRDIE 223 (279)
T ss_pred cCCcccCcccchhhCCCCCc
Confidence 44678899999999998774
No 390
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=30.28 E-value=2.6e+02 Score=24.91 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=29.0
Q ss_pred Cccc--cccCCEEEEEcCCC-C---cchhhHHHHHHHHHHhCCCeEEEEc
Q 009859 208 SISG--LEKADCFLLVGTQP-R---VEAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 208 ~~~d--i~~ad~il~~G~n~-~---~~~p~~~~~lr~a~~~~g~klv~id 251 (523)
++.+ .++.|.+++.|... . ...|.+...+|+..+ +|..|..|.
T Consensus 55 ~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~-~~~~i~~ic 103 (179)
T TIGR01383 55 SLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQES-KGKLVAAIC 103 (179)
T ss_pred CHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHH-CCCEEEEEC
Confidence 4555 56789999988642 1 124556667887764 788888775
No 391
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.28 E-value=2.8e+02 Score=22.15 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEc
Q 009859 173 ALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 173 ~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~id 251 (523)
-++++++..|.....+ .+. -+.......-...+.++|+||++=.... | -..+.+++.+++.+.+++...
T Consensus 14 ~~~~~~~~~G~~~~~h-g~~------~~~~~~~~~l~~~i~~aD~VIv~t~~vs--H-~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 14 RYKRILEKYGGKLIHH-GRD------GGDEKKASRLPSKIKKADLVIVFTDYVS--H-NAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHcCCEEEEE-ecC------CCCccchhHHHHhcCCCCEEEEEeCCcC--h-HHHHHHHHHHHHcCCcEEEEC
Confidence 3678888899876655 111 0100000001356789999999844332 2 345677877777899998876
No 392
>PRK08322 acetolactate synthase; Reviewed
Probab=30.27 E-value=62 Score=35.19 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=29.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|.... + ....+..|+..+|.
T Consensus 186 i~~~~~~l~~A~rPviv~G~g~~~~-~---a~~~l~~lae~~~~ 225 (547)
T PRK08322 186 IERAAEAIQAAKNPLILIGAGANRK-T---ASKALTEFVDKTGI 225 (547)
T ss_pred HHHHHHHHHhCCCcEEEECCCcchh-c---HHHHHHHHHHHhCC
Confidence 3567789999999999999998542 2 34556677777654
No 393
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=30.25 E-value=30 Score=32.25 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=13.6
Q ss_pred cccccccccccCcccccc
Q 009859 38 LSGNVIDICPVGALTSKP 55 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~k~ 55 (523)
=||.||..||-||-.-.+
T Consensus 104 GC~yCi~ACPyga~~~~~ 121 (203)
T COG0437 104 GCGYCIAACPYGAPQFNP 121 (203)
T ss_pred CchHHHhhCCCCCceeCc
Confidence 368888899988876544
No 394
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=30.09 E-value=4.7 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.1
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||+||+.-.
T Consensus 176 C~~C~~C~~aCP~~ai~~~ 194 (228)
T TIGR03294 176 CMGCGTCAAACPTRAIEME 194 (228)
T ss_pred CcChhHHHHhCCHhhEEEe
Confidence 5679999999999998653
No 395
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=30.04 E-value=68 Score=35.49 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+.... + ....+..|+..+|.
T Consensus 221 i~~~~~~L~~AkrPlIl~G~g~~~~-~---a~~~l~~lae~l~~ 260 (612)
T PRK07789 221 IREAAKLIAAARRPVLYVGGGVIRA-E---ASAELRELAELTGI 260 (612)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccc-C---HHHHHHHHHHHHCC
Confidence 4567789999999999999998543 2 23445566666554
No 396
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=29.91 E-value=33 Score=40.57 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=35.8
Q ss_pred cCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCC
Q 009859 354 ESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPAS 399 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a 399 (523)
.+.+.++++|+||... ++..+..-+|++|+..++|+..||..||..
T Consensus 244 ~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIr 298 (1235)
T TIGR01580 244 YNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPK 298 (1235)
T ss_pred hcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCC
Confidence 4689999999997421 122334568999999999999999999976
No 397
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.87 E-value=21 Score=39.03 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.6
Q ss_pred cccccccccccCcccc
Q 009859 38 LSGNVIDICPVGALTS 53 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~ 53 (523)
.||.|+++||++|+..
T Consensus 514 ~C~~C~~~Cp~~ai~~ 529 (564)
T PRK12771 514 ECDNCYGACPQDAIIK 529 (564)
T ss_pred ccchhhhhCChhheee
Confidence 4699999999999764
No 398
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.86 E-value=52 Score=34.63 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+.... ....+..|+..+|.
T Consensus 201 i~~~~~~l~~AkrPvi~~G~g~~~~-----a~~~l~~lae~~~~ 239 (432)
T TIGR00173 201 LDELWDRLNQAKRGVIVAGPLPPAE-----DAEALAALAEALGW 239 (432)
T ss_pred HHHHHHHHhhcCCcEEEEcCCCcHH-----HHHHHHHHHHhCCC
Confidence 4677899999999999999998632 24556677777654
No 399
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.85 E-value=4.3e+02 Score=24.06 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=23.9
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+.+-|+++++...- +.+-+...++.+ +++|++++.|-..
T Consensus 104 ~~~~Dl~i~iS~sG--~t~~~~~~~~~a-k~~g~~~I~iT~~ 142 (188)
T PRK13937 104 GRPGDVLIGISTSG--NSPNVLAALEKA-RELGMKTIGLTGR 142 (188)
T ss_pred CCCCCEEEEEeCCC--CcHHHHHHHHHH-HHCCCeEEEEeCC
Confidence 45668887775432 223344445555 4589999999653
No 400
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=29.51 E-value=70 Score=34.70 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=28.8
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+..... ....+..|+..+|.
T Consensus 185 i~~~~~~l~~A~rPvi~~G~g~~~~~----a~~~l~~lae~~g~ 224 (539)
T TIGR02418 185 IDEVAEAIQNAKLPVLLLGLRASSPE----TTEAVRRLLKKTQL 224 (539)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCccc----HHHHHHHHHHHhCC
Confidence 34667899999999999999986532 24455667776654
No 401
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=29.49 E-value=16 Score=37.67 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=14.3
Q ss_pred CCcCcccccccccccccC
Q 009859 32 KLMTSELSGNVIDICPVG 49 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvG 49 (523)
..|.|==||.|...|||=
T Consensus 306 e~L~CIRCGaC~n~CPvY 323 (459)
T COG1139 306 EALRCIRCGACLNHCPVY 323 (459)
T ss_pred HHHHhhcchHhhhcChhh
Confidence 345566799999999983
No 402
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=29.18 E-value=2.3e+02 Score=26.36 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=29.5
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
..++..-|+++++...-+...|+-..+. .|++|++||++-.
T Consensus 99 ~~~i~~~DVliviSnSGrNpvpie~A~~---~rekGa~vI~vTS 139 (243)
T COG4821 99 RLQIRPNDVLIVISNSGRNPVPIEVAEY---AREKGAKVIAVTS 139 (243)
T ss_pred HhcCCCCCEEEEEeCCCCCCcchHHHHH---HHhcCCeEEEEeh
Confidence 4678889999999766565567644333 2468999999975
No 403
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.15 E-value=73 Score=34.91 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=29.0
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|.... + ....+..|+..+|.
T Consensus 196 i~~a~~~L~~A~rPvi~~G~g~~~~-~---a~~~l~~lae~~~~ 235 (574)
T PRK07979 196 IKRALQTLVAAKKPVVYVGGGAINA-A---CHQQLKELVEKLNL 235 (574)
T ss_pred HHHHHHHHHcCCCCEEEECCCcccc-c---hHHHHHHHHHHhCC
Confidence 4567889999999999999998654 2 23345566766654
No 404
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=29.14 E-value=72 Score=34.98 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=28.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|...+. ....+..|+..+|.
T Consensus 203 i~~~~~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~lg~ 242 (578)
T PRK06112 203 LAEAASLLAQAQRPVVVAGGGVHISG----ASAALAALQSLAGL 242 (578)
T ss_pred HHHHHHHHHcCCCcEEEECCCccccc----hHHHHHHHHHHhCC
Confidence 34667899999999999998885432 23355667776654
No 405
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=29.09 E-value=70 Score=34.77 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=28.8
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|..... ....+..|+..+|.
T Consensus 195 i~~a~~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~~~~ 234 (539)
T TIGR03393 195 RDAAENKLAMAKRVSLLADFLALRHG----LKHALQKWVKEVPM 234 (539)
T ss_pred HHHHHHHHHhCCCCEEEeChhhcccC----hHHHHHHHHHHhCC
Confidence 35678899999999999999886542 23445666666644
No 406
>PLN02573 pyruvate decarboxylase
Probab=29.04 E-value=65 Score=35.41 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|..... ....+..|+..+|.
T Consensus 214 ~~~a~~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~~~~ 253 (578)
T PLN02573 214 VEAAAEFLNKAVKPVLVGGPKLRVAK----ACKAFVELADASGY 253 (578)
T ss_pred HHHHHHHHHhCCCCEEEEChhhcccc----hHHHHHHHHHHhCC
Confidence 45788999999999999999986542 23456667776654
No 407
>PRK08617 acetolactate synthase; Reviewed
Probab=28.89 E-value=69 Score=34.90 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.+|++|+|+.|.+.... .....+..|+..+|.
T Consensus 192 ~~~~~~L~~AkrPvi~~G~g~~~~----~a~~~l~~lae~~~~ 230 (552)
T PRK08617 192 NYLAELIKNAKLPVLLLGMRASSP----EVTAAIRRLLERTNL 230 (552)
T ss_pred HHHHHHHHhCCCCEEEECCCcchh----hHHHHHHHHHHHhCC
Confidence 456789999999999999998643 234556667777654
No 408
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.83 E-value=67 Score=35.06 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+.... + ....+..|+..+|.
T Consensus 194 i~~~~~~L~~A~rPvi~~G~g~~~~-~---a~~~l~~lae~~~~ 233 (557)
T PRK08199 194 LARLAELLARAERPLVILGGSGWTE-A---AVADLRAFAERWGL 233 (557)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCch-h---HHHHHHHHHHHhCC
Confidence 3466789999999999999987543 2 24456667777654
No 409
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=28.75 E-value=73 Score=35.02 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=29.2
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+..... ....+..|+..+|.
T Consensus 207 v~~a~~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~lg~ 246 (585)
T CHL00099 207 IEQAAKLILQSSQPLLYVGGGAIISD----AHQEITELAELYKI 246 (585)
T ss_pred HHHHHHHHHcCCCcEEEECCCCchhc----hHHHHHHHHHHHCC
Confidence 45678899999999999999986542 24445667776654
No 410
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=28.75 E-value=1.2e+02 Score=26.26 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.6
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
.+.+++.|-++|..+.-+-| .+++-+...++|.+|+=|+|...
T Consensus 12 iL~~~K~IAvVG~S~~P~r~--sy~V~kyL~~~GY~ViPVNP~~~ 54 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRP--SYRVAKYLQQKGYRVIPVNPKLA 54 (140)
T ss_pred HHHhCceEEEEecCCCCCcc--HHHHHHHHHHCCCEEEeeCcccc
Confidence 34689999999987776654 44555555568999999999654
No 411
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=28.74 E-value=21 Score=35.98 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=28.8
Q ss_pred Cccccc--ccccccccCcccccccccccccccceeeeeeeccCCCCCcEEE
Q 009859 35 TSELSG--NVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRI 83 (523)
Q Consensus 35 ~~~~~G--n~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~i~v 83 (523)
.|-.|+ .|+++||+||++..+-. ....++. ....-|..|...|...+
T Consensus 111 ~C~hC~~p~Cv~aCP~gAi~k~~~~-g~V~id~-dkCigCg~Cv~aCP~ga 159 (328)
T PRK10882 111 QCMHCVDPNCVSVCPVSALTKDPKT-GIVHYDK-DVCTGCRYCMVACPFNV 159 (328)
T ss_pred cCCCcCchhhHhhCCCCCEEecccC-CcccCCH-HHcCcccHHHHhCCccc
Confidence 467788 89999999999865310 1111221 22344677778887443
No 412
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.72 E-value=74 Score=34.85 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=28.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+..... ...++..|+..+|.
T Consensus 196 i~~~~~~L~~A~rPvil~G~g~~~~~----a~~~l~~lae~~~~ 235 (572)
T PRK08979 196 IKRGLQALLAAKKPVLYVGGGAIISG----ADKQILQLAEKLNL 235 (572)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccC----hHHHHHHHHHHhCC
Confidence 34667889999999999999986542 23345566666654
No 413
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=28.65 E-value=76 Score=34.51 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.+|++|+|++|.|..... ....+..|+..+|.
T Consensus 187 ~~~~~~L~~AkrPvIl~G~g~~~~~----a~~~l~~lae~l~~ 225 (548)
T PRK08978 187 EQARALLAQAKKPVLYVGGGVGMAG----AVPALREFLAATGM 225 (548)
T ss_pred HHHHHHHHcCCCCEEEECCCccccc----hHHHHHHHHHHHCC
Confidence 4567889999999999999885432 23445566666654
No 414
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=28.59 E-value=71 Score=34.59 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.+|++|+|+.|.+..+. ....++..|+..+|.
T Consensus 197 ~~~~~~L~~AkrPvIl~G~g~~~~----~a~~~l~~lae~lg~ 235 (530)
T PRK07092 197 ARLGDALDAARRPALVVGPAVDRA----GAWDDAVRLAERHRA 235 (530)
T ss_pred HHHHHHHHcCCCcEEEECCCcchh----hhHHHHHHHHHHHCC
Confidence 466789999999999999988643 234556667776654
No 415
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.01 E-value=79 Score=34.66 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=28.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+.. + ....+..|+..+|.
T Consensus 190 v~~~~~~L~~AkrPvil~G~g~~---~---a~~~l~~lae~l~~ 227 (575)
T TIGR02720 190 VTRAVQTLKAAERPVIYYGIGAR---K---AGEELEALSEKLKI 227 (575)
T ss_pred HHHHHHHHHcCCCcEEEECcchh---h---HHHHHHHHHHHhCC
Confidence 45678999999999999999885 1 23456677777654
No 416
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=27.88 E-value=94 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.2
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCc
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 258 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~ 258 (523)
+.+++++|++|++|+.... .|... +-..++++|++++.|++..+..-
T Consensus 177 ~~~~~~~d~liviGTSl~V-~Paa~--~p~~~~~~g~~~i~iN~~~~~~~ 223 (250)
T COG0846 177 LEALKEADLLIVIGTSLKV-YPAAG--LPELAKRRGAKVIEINLEPTRLD 223 (250)
T ss_pred HHHhccCCEEEEECcceEE-cChhh--hhHHHHhcCCEEEEECCCcccCc
Confidence 3556899999999987543 44333 33334468999999999655443
No 417
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=27.86 E-value=1.4e+02 Score=30.48 Aligned_cols=41 Identities=20% Similarity=0.041 Sum_probs=30.5
Q ss_pred cCccEEEEEcCCCCCC---------CCC-CCCceEEEEcccCCcccCcceE
Q 009859 354 ESAKFVYLMGADDVDL---------EKL-PNDAFVVYQGHHGDHGVYRANV 394 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~---------~~l-~~~~fvV~~d~~~t~ta~~ADv 394 (523)
.+-+.++++|.||... .+. ++...+|++|+..+.|+..+|+
T Consensus 144 ~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~ 194 (375)
T cd02773 144 EEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHL 194 (375)
T ss_pred hhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccC
Confidence 4578999999998531 122 2345789999999999988874
No 418
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=27.82 E-value=80 Score=34.74 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=28.1
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
++++++.|.+|++|+|++|.+...... ...+..|+..+|.
T Consensus 190 i~~a~~~L~~A~rPvil~G~g~~~~~a----~~~l~~lae~~~~ 229 (588)
T PRK07525 190 LAEAAELLSEAKFPVILSGAGVVLSDA----IEECKALAERLDA 229 (588)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCh----HHHHHHHHHHhCC
Confidence 456788999999999999999865422 3344456665544
No 419
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.73 E-value=80 Score=34.60 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=28.7
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.+.... ++ ...+..|+..+|.
T Consensus 196 i~~~~~~L~~A~rPvil~G~g~~~~-~a---~~~l~~lae~~g~ 235 (574)
T PRK06466 196 IRKAVEMLLAAKRPVIYSGGGVVLG-NA---SALLTELAHLLNL 235 (574)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccc-Ch---HHHHHHHHHHhCC
Confidence 3567889999999999999998543 22 3445666666654
No 420
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=27.62 E-value=23 Score=30.65 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=15.9
Q ss_pred Cccccc-----ccccccccCcccc
Q 009859 35 TSELSG-----NVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~G-----n~idvCPvGAlt~ 53 (523)
.|.-|| .|+++||++|+.-
T Consensus 9 ~C~gC~~~~~~~Cv~~CP~~ai~~ 32 (132)
T TIGR02060 9 KCDGCKAGEKTACVYICPNDLMHL 32 (132)
T ss_pred cccCccCCchhcCHhhcCccceEe
Confidence 356789 9999999999853
No 421
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=27.55 E-value=67 Score=37.05 Aligned_cols=50 Identities=8% Similarity=-0.016 Sum_probs=38.7
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
+-+.++++|.||..+.|-...+.+++.++.---+|++|...|.|+..+|+
T Consensus 474 ~ik~l~~~g~Np~~~~p~~~~~~~~a~~~~~df~Vv~D~f~teTa~~ADi 523 (830)
T TIGR01706 474 KLNFYWVQVNNNMQAGPNINEERLPGYRNPDNFIVVSDAYPTVTALAADL 523 (830)
T ss_pred CceEEEEccCChhhcCccchHHHHHHHhCCCCeEEEecCccCcchhhCCE
Confidence 47788999999999998766455666542223788899999999999883
No 422
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=27.45 E-value=4e+02 Score=26.90 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=25.9
Q ss_pred Cccccc-cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 208 SISGLE-KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 208 ~~~di~-~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
++.-++ +.-+|++.+.+... + ...++.+..++.|.++++|+..
T Consensus 251 P~~li~~~~~vi~l~~~~~~~--~-~~~~~~~~l~~~~~~v~~I~~~ 294 (340)
T PRK11382 251 PLEIVEPGVPFLFLLGNDESR--H-TTERAINFVKQRTDNVIVIDYA 294 (340)
T ss_pred hHHHhcCCceEEEEEcCcchH--H-HHHHHHHHHHHCCCeEEEEECC
Confidence 444454 33457777655332 2 3445555556689999999753
No 423
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=27.26 E-value=30 Score=33.96 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.5
Q ss_pred CCcCcccccccccccccCcc
Q 009859 32 KLMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAl 51 (523)
....|..||+|.++||.|.-
T Consensus 242 gl~~C~~C~~C~~vCPkgI~ 261 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKGLN 261 (276)
T ss_pred CCCcCcChhhccccCCCCCC
Confidence 34568899999999999873
No 424
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.23 E-value=2.3e+02 Score=27.50 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=22.0
Q ss_pred CCCceEEEEcccCCcccCcceEEecCCC
Q 009859 373 PNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 373 ~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
.+...++..+...++.+++||++|+..+
T Consensus 201 ~ga~iI~IT~~~~s~la~~ad~~l~~~~ 228 (278)
T PRK11557 201 VGAKVLAITGFTPNALQQRASHCLYTIA 228 (278)
T ss_pred cCCCEEEEcCCCCCchHHhCCEEEEeCC
Confidence 4567777777778889999999997643
No 425
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.06 E-value=42 Score=38.18 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=34.6
Q ss_pred cCccEEEEEcCCCCCC----------CCCCCCceEEEEcccCCcccCcceEEecCC
Q 009859 354 ESAKFVYLMGADDVDL----------EKLPNDAFVVYQGHHGDHGVYRANVILPAS 399 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~----------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a 399 (523)
.+.+.++++|+||... ++-++.--+|++|+..++|+..||..||..
T Consensus 172 ~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpir 227 (760)
T cd02760 172 PLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIR 227 (760)
T ss_pred hcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcC
Confidence 4678999999998421 011123357888999999999999999877
No 426
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.04 E-value=82 Score=34.51 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=28.8
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.+++++|.+|++|+|+.|.+.... + ....+..|+..+|.
T Consensus 205 i~~~~~~L~~A~rPvIl~G~g~~~~-~---a~~~l~~lae~~~~ 244 (571)
T PRK07710 205 IRKLVQAVSVAKKPVILAGAGVLHA-K---ASKELTSYAEQQEI 244 (571)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCcc-c---hHHHHHHHHHHhCC
Confidence 4567889999999999999997643 2 23445667776654
No 427
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=26.96 E-value=89 Score=34.22 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=28.1
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+.. .....+..|+..+|.
T Consensus 191 i~~~~~~L~~AkrPvii~G~g~~------~a~~~l~~lae~l~~ 228 (574)
T PRK09124 191 LRKLAALLNGSSNITLLCGSGCA------GAHDELVALAETLKA 228 (574)
T ss_pred HHHHHHHHHcCCCCEEEECcChH------hHHHHHHHHHHHhCC
Confidence 35667899999999999998862 234556677777654
No 428
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=26.92 E-value=19 Score=40.39 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=19.0
Q ss_pred CCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC
Q 009859 425 VGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVA 462 (523)
Q Consensus 425 ~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~ 462 (523)
.|+--+||..|-.= ..+.|+.--+|+++.+.+.+
T Consensus 722 ~g~~p~d~~~~vr~----~~d~p~~~~~~~~~~l~~~~ 755 (784)
T TIGR00314 722 LGRMPDDWAVFVRT----EADLPLKMKDQLLKVLEEKY 755 (784)
T ss_pred hCcCCcHHHHHhcC----ccccchhhHHHHHHHHHHhh
Confidence 45555676654321 12345556677777776654
No 429
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=26.72 E-value=82 Score=34.31 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.0
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|... ....+..|+..+|.
T Consensus 185 i~~~~~~L~~AkrPvii~G~g~~~------a~~~l~~lAe~~~~ 222 (549)
T PRK06457 185 FSRAKELIKESEKPVLLIGGGTRG------LGKEINRFAEKIGA 222 (549)
T ss_pred HHHHHHHHHcCCCcEEEECcchhh------HHHHHHHHHHHHCC
Confidence 356778899999999999998741 22456677777654
No 430
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=26.53 E-value=71 Score=28.83 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=19.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccc
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFER 301 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~ 301 (523)
.+.+|+++++||+|++++|..+...
T Consensus 24 ~~~aa~~i~kAKrPllvvGp~vl~~ 48 (167)
T PF02552_consen 24 PEVAAKMIKKAKRPLLVVGPLVLWD 48 (167)
T ss_dssp SHHHHHHHHHSSSEEEEE-STT--H
T ss_pred HHHHHHHHHhcCCCEEEeCCcccch
Confidence 3678999999999999999988753
No 431
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=26.33 E-value=31 Score=33.35 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=16.9
Q ss_pred CCcCcccccccccccccCccc
Q 009859 32 KLMTSELSGNVIDICPVGALT 52 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt 52 (523)
....|..||+|.++||.|--.
T Consensus 207 g~~~C~~Cg~C~~vCPkgI~~ 227 (249)
T PRK08640 207 GIADCGNAQNCVRVCPKGIPL 227 (249)
T ss_pred CeeCCcCcCcccccCCCCCCH
Confidence 346788999999999987643
No 432
>PRK11269 glyoxylate carboligase; Provisional
Probab=26.29 E-value=86 Score=34.53 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|.... + ...++..|+..+|.
T Consensus 193 i~~~~~~L~~AkrPvil~G~g~~~~-~---a~~~l~~lae~~g~ 232 (591)
T PRK11269 193 IEKALEMLNAAERPLIVAGGGVINA-D---ASDLLVEFAELTGV 232 (591)
T ss_pred HHHHHHHHHhCCCcEEEECCCCccc-C---HHHHHHHHHHHhCC
Confidence 3466789999999999999988643 2 24456667776654
No 433
>PF15269 zf-C2H2_7: Zinc-finger
Probab=26.15 E-value=39 Score=22.92 Aligned_cols=29 Identities=7% Similarity=-0.193 Sum_probs=22.0
Q ss_pred ccccccccccceeeeeeeccCCCCCcEEEE
Q 009859 55 PFAFKARNWELKGTETIDVTDAVGSNIRID 84 (523)
Q Consensus 55 ~~~~~aR~Wel~~~~siC~~C~~gC~i~v~ 84 (523)
...|-.|||.. -+.--|-.|..-|++.-+
T Consensus 7 kphyiprp~gk-p~~ykcfqcpftc~~ksh 35 (54)
T PF15269_consen 7 KPHYIPRPPGK-PFKYKCFQCPFTCNEKSH 35 (54)
T ss_pred CCCcCCCCCCC-CccceeecCCcccchHHH
Confidence 34678999985 556679999999987644
No 434
>PRK07524 hypothetical protein; Provisional
Probab=26.01 E-value=91 Score=33.80 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=28.4
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+.. + ....+..|+..+|.
T Consensus 191 i~~~~~~L~~AkrPvil~G~g~~---~---a~~~l~~lae~l~~ 228 (535)
T PRK07524 191 LAQAAERLAAARRPLILAGGGAL---A---AAAALRALAERLDA 228 (535)
T ss_pred HHHHHHHHHhCCCcEEEECCChH---H---HHHHHHHHHHHHCC
Confidence 45667899999999999999874 1 24566677777654
No 435
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=25.95 E-value=5.4e+02 Score=25.95 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEE
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCF 218 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~i 218 (523)
+++.++.+++.|++...++|.+++.+.+.. ....++.++..++.-.+.... ...+.. .....+.+-|++
T Consensus 28 ~~~~l~~~~~~l~~~~~~~I~~~g~GsS~~-aa~~~~~~~~k~~~i~v~~~~-----~~~~~~-----~~~~~~~~~~lv 96 (340)
T PRK11382 28 DVPLVHAIVEEMVKRDIDRIYFVACGSPLN-AAQTAKHLADRFSDLQVYAIS-----GWEFCD-----NTPYRLDDRCAV 96 (340)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEEechHHH-HHHHHHHHHHHHcCCCeEEec-----cHHHHh-----cCCcCCCCCCEE
Confidence 456677777777764345776666554332 334445554444321111111 011111 112234455666
Q ss_pred EEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 219 LLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 219 l~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
|.+-. ..+.+-.-..++.+. ++|+++|.|-..
T Consensus 97 I~iS~--SGeT~e~i~al~~ak-~~Ga~~I~IT~~ 128 (340)
T PRK11382 97 IGVSD--YGKTEEVIKALELGR-ACGALTAAFTKR 128 (340)
T ss_pred EEEcC--CCCCHHHHHHHHHHH-HcCCeEEEEECC
Confidence 66621 122233344455554 589999998554
No 436
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=25.40 E-value=1.7e+02 Score=36.63 Aligned_cols=109 Identities=10% Similarity=0.017 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCC----------ccc---hhhhhhcCc--c
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGT----------GAQ---SNADLRSGY--I 204 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~----------~~~---~~~~~~~~~--~ 204 (523)
+++++.+++.|++. ++..++.|+.........+..|++.+|.+.+..... .+. ....++... .
T Consensus 511 ~~~i~~a~~~L~~A--kRPvIvaG~G~~~~~a~~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~ 588 (1655)
T PLN02980 511 TGQITEVLEVIQEA--KRGLLLIGAIHTEDDIWAALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHAL 588 (1655)
T ss_pred hhhHHHHHHHHHhC--CCcEEEEcCCCchHHHHHHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHh
Confidence 45677777777765 355556654433222234578999999887643321 011 000111000 0
Q ss_pred cCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 205 MNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 205 ~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
.+.....+.++|+||.+|+.+..... ...+... ...++|.||....
T Consensus 589 ~~~~~~~~~~aDlVl~iG~rl~s~~~--t~~~~~~---~~~~~I~ID~d~~ 634 (1655)
T PLN02980 589 LSDSVRNWIQFDVVIQIGSRITSKRV--SQMLEKC---FPFSYILVDKHPC 634 (1655)
T ss_pred CchhhhccCCCCEEEEeCCccccHHH--HHHHHhC---CCCeEEEECCCCC
Confidence 11223446799999999987643221 1122211 1235888887443
No 437
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=25.20 E-value=66 Score=37.08 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=39.3
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
+-+.++++|.||..+.|-....++++.++..--+|++|+..|.|+..+|+
T Consensus 474 ~ik~l~~~g~Np~~~~p~~~~~~~~al~~~~~f~Vv~D~~~teTa~~ADi 523 (830)
T PRK13532 474 KLNAYWVMCNNNMQAGPNINEERLPGWRNPDNFIVVSDPYPTVSALAADL 523 (830)
T ss_pred CceEEEEcCCCccccCcCccHHHHHHHhCCCCCEEEECCcCCcchhhCCE
Confidence 47788999999999998765546777653234788899999999999883
No 438
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=25.18 E-value=2.5e+02 Score=24.40 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=28.8
Q ss_pred Ccccc--ccCCEEEEEcCC-CCc---chhhHHHHHHHHHHhCCCeEEEEc
Q 009859 208 SISGL--EKADCFLLVGTQ-PRV---EAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 208 ~~~di--~~ad~il~~G~n-~~~---~~p~~~~~lr~a~~~~g~klv~id 251 (523)
++.+. .+.|.+++.|.. ... ..+.+...+++..+ ++..|..|.
T Consensus 52 ~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~-~~~~i~~ic 100 (163)
T cd03135 52 TLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNA-KGKLIAAIC 100 (163)
T ss_pred CHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHH-cCCEEEEEc
Confidence 45555 688999999875 221 24556667777764 777887775
No 439
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=25.13 E-value=89 Score=34.45 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=28.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|.. + ....+..|+..+|.
T Consensus 198 i~~a~~~L~~AkrPvi~~G~g~~---~---a~~~l~~lae~~~~ 235 (597)
T PRK08273 198 LRRAAEVLNAGRKVAILVGAGAL---G---ATDEVIAVAERLGA 235 (597)
T ss_pred HHHHHHHHhcCCCEEEEECcchH---h---HHHHHHHHHHHhCC
Confidence 45678999999999999999974 1 24456667776654
No 440
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=25.08 E-value=2.3e+02 Score=26.74 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=54.6
Q ss_pred CeeEcCHH-HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHH---HcCCCccccCCCccchhhhhhcCcccCCC
Q 009859 133 RFKAVNWR-DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLN---RMGSNNVWCEGTGAQSNADLRSGYIMNTS 208 (523)
Q Consensus 133 ~~~~isWd-eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~---~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (523)
++....|- -+++.|++.++.. ..+|+++--...+-|..++..++.+ .+|..-...+ ....+
T Consensus 10 ~~~~~~~~~~~~~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~--------------l~~~~ 74 (224)
T COG3340 10 TFSFEDVLEHFLPFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELH--------------LSKPP 74 (224)
T ss_pred CcccchhhhhhhHHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeee--------------ccCCC
Confidence 33333343 5667777777764 2477776443333344445555554 4454322111 11246
Q ss_pred cccccc----CCEEEEEcCCCCcchhh-----HHHHHHHHHHhCCCeEEE
Q 009859 209 ISGLEK----ADCFLLVGTQPRVEAAM-----VNARIRKTVRANNAKVGY 249 (523)
Q Consensus 209 ~~di~~----ad~il~~G~n~~~~~p~-----~~~~lr~a~~~~g~klv~ 249 (523)
.++|++ +|.|.+=|.|...=--. +..-||++++ +|.-.+=
T Consensus 75 ~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk-~G~~YiG 123 (224)
T COG3340 75 LAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVK-AGTPYIG 123 (224)
T ss_pred HHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHH-cCCceEE
Confidence 677777 99999999885431111 1223777775 7765553
No 441
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=25.03 E-value=80 Score=34.16 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=37.4
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
+-+.++++|.||..+.|-.. +++++.+ +---+|++|+..+.|+..+|+
T Consensus 383 ~ik~l~v~~~Np~~~~p~~~-~~~~al~-k~df~Vv~d~~~teTa~~ADv 430 (524)
T cd02764 383 KVSALLVYDVNPVYDLPQGL-GFAKALE-KVPLSVSFGDRLDETAMLCDW 430 (524)
T ss_pred CccEEEEeCCCccccCCCcH-HHHHHHh-cCCeEEEecCCCChhHHhcCE
Confidence 45789999999999988643 4777664 333678899999999988874
No 442
>PRK08266 hypothetical protein; Provisional
Probab=24.98 E-value=1e+02 Score=33.42 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.+|++|+|++|.+.. .....+..|+..+|.
T Consensus 196 ~~~~~~L~~AkrPvIv~G~g~~------~a~~~l~~lae~~g~ 232 (542)
T PRK08266 196 AAAAALIAAAKNPMIFVGGGAA------GAGEEIRELAEMLQA 232 (542)
T ss_pred HHHHHHHHhCCCCEEEECCChh------hHHHHHHHHHHHHCC
Confidence 4567889999999999999842 235566777777765
No 443
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=24.83 E-value=23 Score=31.04 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.5
Q ss_pred CcccccccccccccCc
Q 009859 35 TSELSGNVIDICPVGA 50 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGA 50 (523)
.|-.||.|..+||+..
T Consensus 3 ~Ci~CG~C~~~CP~~~ 18 (144)
T TIGR03290 3 ACYQCGTCTGSCPSGR 18 (144)
T ss_pred cccCCCCCcCcCCCcc
Confidence 4667999999999964
No 444
>PRK01310 hypothetical protein; Validated
Probab=24.75 E-value=1.4e+02 Score=24.70 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=38.5
Q ss_pred ceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCC
Q 009859 392 ANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR 445 (523)
Q Consensus 392 ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~ 445 (523)
+=-|-|.+.-.+-.|.....+|+.+.--.+-.||-+-+..-++++.||+.||++
T Consensus 15 ~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~l~v~ 68 (104)
T PRK01310 15 AVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKALGVP 68 (104)
T ss_pred EEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHHhCCC
Confidence 334567777666666544445654444456678888899999999999999975
No 445
>PLN02470 acetolactate synthase
Probab=24.57 E-value=1e+02 Score=33.89 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=27.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+... ....+..|+..+|.
T Consensus 205 i~~~~~~L~~A~rPvI~~G~g~~~------a~~~l~~lae~~~~ 242 (585)
T PLN02470 205 LEQIVRLISESKRPVVYVGGGCLN------SSEELREFVELTGI 242 (585)
T ss_pred HHHHHHHHHcCCCCEEEECCChhh------hHHHHHHHHHHhCC
Confidence 456788999999999999998741 23456667776654
No 446
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=24.54 E-value=96 Score=34.12 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=29.2
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+.... + ....+..|+..+|.
T Consensus 193 i~~~~~~L~~AkrPvil~G~g~~~~-~---a~~~l~~lae~~~~ 232 (586)
T PRK06276 193 IKKAAELIAEAERPVILAGGGVIIS-G---ASEELIELSELVKI 232 (586)
T ss_pred HHHHHHHHHcCCCeEEEECCCcCcc-c---HHHHHHHHHHHHCC
Confidence 4567889999999999999998643 2 23445667777654
No 447
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=24.42 E-value=1.4e+02 Score=31.67 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccC---CCccccccCC
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMN---TSISGLEKAD 216 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---~~~~di~~ad 216 (523)
-+.++.+++.|++++. .+.+++.+-.-...-.-+++|.+.+|-+.+-+...-- -++.+..++ ..-.-+++||
T Consensus 204 ~s~i~~av~llk~AKr-PLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpMgKG----ll~d~hPl~v~~aRS~ALk~AD 278 (571)
T KOG1185|consen 204 PSQIQKAVQLLKSAKR-PLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPMGKG----LLPDNHPLNVSSARSLALKKAD 278 (571)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEecccccCccHHHHHHHHHhcCCCcccCccccc----CCCCCCchhhhHHHHHHHhhCC
Confidence 5788889999998864 3555554422111234588999999988765543210 011111111 1224578999
Q ss_pred EEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 217 CFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 217 ~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
++|+.|.-...- ++. -.--.+ .+..|+|.||-.
T Consensus 279 vvll~Garlnwi--Lhf-G~~Pk~-~kd~KfIqvd~n 311 (571)
T KOG1185|consen 279 VVLLAGARLNWI--LHF-GLPPKW-SKDVKFIQVDIN 311 (571)
T ss_pred EEEEecceeeEE--Eec-CCCCcc-CCCceEEEEeCC
Confidence 999999743221 000 000012 367899999864
No 448
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=24.41 E-value=17 Score=38.35 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=21.4
Q ss_pred CcccccccccccccCcccccccccc-ccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPFAFK-ARNWE 64 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~~~-aR~We 64 (523)
.|--||.|+++||.+=+-.+-+++- ++-++
T Consensus 375 ~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~ 405 (448)
T PRK05352 375 AMVPIGNYERVMPLDILPTQLLRALIVGDTD 405 (448)
T ss_pred ceeecCcHhhcCCCCCCHHHHHHHHHcCCHH
Confidence 3557999999999977666655554 45553
No 449
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=23.96 E-value=1e+02 Score=31.31 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=31.0
Q ss_pred ccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 209 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 209 ~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
..+++++|++|++|+..... |.. .+-..++ ++++++.|++....
T Consensus 200 ~~~~~~aDllLVIGTSL~V~-Paa--~l~~~a~-~~~pvviIN~e~~~ 243 (349)
T PTZ00410 200 HHDIPEAELLLIIGTSLQVH-PFA--LLACVVP-KDVPRVLFNLERVG 243 (349)
T ss_pred HHHHHhCCEEEEECcCCccc-CHH--HHHHHHh-cCCCEEEECccccC
Confidence 34678999999999976553 543 3333444 68999999986543
No 450
>PRK08611 pyruvate oxidase; Provisional
Probab=23.89 E-value=1.1e+02 Score=33.67 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.+|++|+|++|.+... ....+..|+..+|.
T Consensus 194 ~~~~~~L~~AkrPvil~G~g~~~------a~~~l~~lae~~~~ 230 (576)
T PRK08611 194 KKAAKLINKAKKPVILAGLGAKH------AKEELLAFAEKAKI 230 (576)
T ss_pred HHHHHHHHcCCCcEEEECcCcch------HHHHHHHHHHHhCC
Confidence 46678899999999999998741 23456777777754
No 451
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.72 E-value=1e+02 Score=33.68 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=28.2
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.|.... + ...++..|+..+|.
T Consensus 196 i~~~~~~l~~A~rPvi~~G~g~~~~-~---a~~~l~~lae~~~~ 235 (574)
T PRK06882 196 IKKALKALLVAKKPVLFVGGGVITA-E---CSEQLTQFAQKLNL 235 (574)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccc-c---hHHHHHHHHHHhCC
Confidence 3466788999999999999998543 2 23345566666654
No 452
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.56 E-value=83 Score=34.80 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 215 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 215 ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
-+.++++|.||..+.|-. .+++++.+ +---+|++|...|.|+..||+
T Consensus 409 ik~l~~~g~Np~~~~p~~-~~~~~al~-~ldf~V~~D~~~teTa~~ADi 455 (609)
T cd02769 409 IKLVYWAGGNPFHHHQDL-NRLIRAWQ-KPETVIVHEPFWTATARHADI 455 (609)
T ss_pred EEEEEECCCChHhcCcCH-HHHHHHHh-cCCEEEEecCCCCcchhhccE
Confidence 577889999999988865 46777765 333678899999999999984
No 453
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=23.52 E-value=4.8e+02 Score=28.66 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccC-CCcccc--c
Q 009859 138 NWRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMN-TSISGL--E 213 (523)
Q Consensus 138 sWdeAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~di--~ 213 (523)
+.++|.+.|++.+++- +.|.+++--..+ .-+...+.++++.+|..++.+..+ .-+...|..+ ..++++ +
T Consensus 54 ~m~~a~~ri~~ai~~~--e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP-----~R~~eGYGl~~~~i~~~~~~ 126 (575)
T PRK11070 54 GIEKAVELLYNALREG--TRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVP-----NRFEDGYGLSPEVVDQAHAR 126 (575)
T ss_pred CHHHHHHHHHHHHHCC--CEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeC-----CCCcCCCCCCHHHHHHHHhc
Confidence 4688998888887763 577766543322 223456778888898754332221 1112222222 123344 3
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
..++||.+++-...- ..+..+ ++.|..||++|-.
T Consensus 127 ~~~LiItvD~Gi~~~-----e~i~~a-~~~gidvIVtDHH 160 (575)
T PRK11070 127 GAQLIVTVDNGISSH-----AGVAHA-HALGIPVLVTDHH 160 (575)
T ss_pred CCCEEEEEcCCcCCH-----HHHHHH-HHCCCCEEEECCC
Confidence 568899887654421 123333 4589999999843
No 454
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=23.37 E-value=26 Score=39.22 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred cccccccccccccCc
Q 009859 36 SELSGNVIDICPVGA 50 (523)
Q Consensus 36 ~~~~Gn~idvCPvGA 50 (523)
|..||+|.++||+|+
T Consensus 405 Ct~CG~C~evCP~gI 419 (731)
T cd01916 405 CVGCGRCEQECPKEI 419 (731)
T ss_pred hhhhhHHhhhCCCCC
No 455
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.23 E-value=86 Score=34.65 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=37.6
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~ 263 (523)
.-+.++++|+||..+.|-.. +++++.+ +---+|++|...+.|+..+|+
T Consensus 406 ~ik~l~~~~~Np~~~~p~~~-~~~~al~-~~df~Vv~d~~~teTa~~ADv 453 (609)
T cd02751 406 DIKMIYWAGGNPLHHHQDLN-RLIKALR-KDETIVVHDIFWTASARYADI 453 (609)
T ss_pred CEEEEEECCCChhhcCcchH-HHHHHHh-cCCEEEEEccCCCCccccCCE
Confidence 46789999999999888654 6777654 434677889999999999884
No 456
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=23.09 E-value=2.7e+02 Score=24.73 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=29.3
Q ss_pred Ccccc--ccCCEEEEEcCCCCc--chhhHHHHHHHHHHhCCCeEEEEc
Q 009859 208 SISGL--EKADCFLLVGTQPRV--EAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 208 ~~~di--~~ad~il~~G~n~~~--~~p~~~~~lr~a~~~~g~klv~id 251 (523)
+++++ ++.|.+++.|..... ..+.+..++|+..+ ++..|..|.
T Consensus 52 ~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~-~~~~i~aic 98 (170)
T cd03140 52 SLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALK-QGKPVAAIC 98 (170)
T ss_pred chhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHH-cCCEEEEEC
Confidence 45666 678999999974322 23556667887765 777777775
No 457
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=22.96 E-value=21 Score=37.61 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=21.9
Q ss_pred cccccccccccccCcccccccccc-ccccc
Q 009859 36 SELSGNVIDICPVGALTSKPFAFK-ARNWE 64 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~-aR~We 64 (523)
|--||.|+++||++=+-..-+++- ++-||
T Consensus 375 CI~CG~C~~vCPm~L~P~~L~~a~~~~d~d 404 (447)
T TIGR01936 375 MIPIGIYERVMPLDIPPTLLLKALIAGDFD 404 (447)
T ss_pred eeECChHhhcCCCCCCHHHHHHHHHcCCHH
Confidence 446999999999998876666555 66664
No 458
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=22.69 E-value=32 Score=32.52 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.4
Q ss_pred cCcccccccccccccCccc
Q 009859 34 MTSELSGNVIDICPVGALT 52 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt 52 (523)
..|-.||.|.++||+....
T Consensus 138 ~~Ci~CG~C~~~CP~~~~~ 156 (220)
T TIGR00384 138 SGCILCGCCYSSCPAFWWN 156 (220)
T ss_pred hhccccccccccCCCCccC
Confidence 3467899999999998654
No 459
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.61 E-value=29 Score=36.37 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=13.1
Q ss_pred CcccccccccccccC
Q 009859 35 TSELSGNVIDICPVG 49 (523)
Q Consensus 35 ~~~~~Gn~idvCPvG 49 (523)
.|.-||.|+.+||.+
T Consensus 343 ~C~~C~~C~~~Cp~~ 357 (420)
T PRK08318 343 KCIGCGRCYIACEDT 357 (420)
T ss_pred HCCCCCcccccCCCc
Confidence 367899999999986
No 460
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=22.56 E-value=35 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.0
Q ss_pred CcccccccccccccCc
Q 009859 35 TSELSGNVIDICPVGA 50 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGA 50 (523)
-|.-||-|+++||+|-
T Consensus 302 ~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 302 MCVGCGRCDDICPEYI 317 (334)
T ss_pred ccCCcCchhhhCCCCC
Confidence 4778999999999984
No 461
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=22.34 E-value=23 Score=24.33 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=12.3
Q ss_pred cccccccCcccccccc
Q 009859 42 VIDICPVGALTSKPFA 57 (523)
Q Consensus 42 ~idvCPvGAlt~k~~~ 57 (523)
|--+||.|++++-..+
T Consensus 24 C~~~CP~g~~~~~~~~ 39 (48)
T PF12801_consen 24 CGWLCPFGALQELLGR 39 (48)
T ss_pred HhccCCchHHHHHHHH
Confidence 5568999999876544
No 462
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=22.14 E-value=32 Score=34.63 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.9
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
-|..||-|..+||. ++|...
T Consensus 6 ~c~~Cg~C~a~cp~-~i~~~~ 25 (332)
T COG1035 6 LCTGCGTCAAVCPY-AITERD 25 (332)
T ss_pred ccccchhhHhhCCc-eEEEec
Confidence 47889999999999 887664
No 463
>PRK07064 hypothetical protein; Provisional
Probab=22.13 E-value=1.2e+02 Score=33.01 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=27.1
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|... ....+..|+. +|.
T Consensus 193 i~~~~~~l~~AkrPvi~~G~g~~~------a~~~l~~lae-~~~ 229 (544)
T PRK07064 193 VAELAERLAAARRPLLWLGGGARH------AGAEVKRLVD-LGF 229 (544)
T ss_pred HHHHHHHHHhCCCCEEEECCChHh------HHHHHHHHHH-cCC
Confidence 356778999999999999998741 2245666777 754
No 464
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=21.90 E-value=1.2e+02 Score=22.19 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.9
Q ss_pred CCeeEcCHHHHHHHHHHH
Q 009859 132 GRFKAVNWRDALAVVAEV 149 (523)
Q Consensus 132 g~~~~isWdeAl~~ia~~ 149 (523)
-....++.|+|++.++++
T Consensus 31 ~~~~~itle~a~~ll~~~ 48 (61)
T PF13368_consen 31 EDPEEITLEEAVELLAEK 48 (61)
T ss_pred CCcccCCHHHHHHHHhch
Confidence 346789999999998876
No 465
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.22 E-value=86 Score=35.57 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=38.7
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHH--hCCCeEEEEcCCCCCCcchhcc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVR--ANNAKVGYIGPATDLNYDHQHL 263 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~--~~g~klv~idp~~~~t~~~a~~ 263 (523)
.-+.++++|.||..+.|-....++++.+ ++=--+|++|+..+.|+..||+
T Consensus 489 ~IKal~i~~~NP~~s~p~~~~~~~eaL~d~~kldlvVv~D~~~teTa~~AD~ 540 (735)
T cd02758 489 KLKALILWMANPVYGAPGLVKQVEEKLKDPKKLPLFIAIDAFINETSAYADY 540 (735)
T ss_pred CcEEEEEeCCChhhcCCcchHHHHHHhcccccCCeEEEEecCcCchHhhCCE
Confidence 4689999999999999976644777653 1222677889999999999883
No 466
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.05 E-value=1.2e+02 Score=33.37 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=29.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|++|.|..... ......+..|+..+|.
T Consensus 202 l~~a~~~L~~A~rPvil~G~g~~~~~--~~a~~~l~~lae~lg~ 243 (595)
T PRK09107 202 ITEAVELLANAKRPVIYSGGGVINSG--PEASRLLRELVELTGF 243 (595)
T ss_pred HHHHHHHHHhCCCcEEEECCcccccc--hhHHHHHHHHHHHHCC
Confidence 35677899999999999999986542 1234455566666654
No 467
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=21.02 E-value=2.6e+02 Score=20.62 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=26.3
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~id 251 (523)
.-..+|+++.+...+.|....++++.+. +|-+|++++
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~-~G~~lvl~a 70 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVE-AGNTLVLAA 70 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHH-cCCEEEEeC
Confidence 4567888888755544556667887765 888998864
No 468
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=20.95 E-value=8.3e+02 Score=24.26 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=67.5
Q ss_pred eEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCcccc--
Q 009859 135 KAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGL-- 212 (523)
Q Consensus 135 ~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di-- 212 (523)
.++++++.++.+.+.++. . ..++++..-.... .+..++..++.-|.......... .........|......
T Consensus 73 ~~id~~~~~~~~~~~~~~-~-~~i~l~~~vqy~~-~~~~~~~~L~~~g~~~~i~~~~~----~~~~~g~vlGc~~~~~~~ 145 (307)
T PF01866_consen 73 INIDVEHLVESLKEEFKK-K-KKIVLLTDVQYAH-ALEELKEILREKGFEVVIGIPQN----RPLSPGQVLGCTYPSADS 145 (307)
T ss_dssp B-S-HHHHHHHTHHHHHT---SEEEEEE-GGGGG-GHHHHHHHHHHTT-EEE-----T----T-SSTTB-BTTB-GGG-S
T ss_pred CCCCHHHHHHHHHHhccC-C-ceEEEEEehhHHH-HHHHHHHHHHHhcccccccCCcc----ccCCcccccCCccCcccc
Confidence 468899999999999887 3 5776655533211 22233444444332111110000 0001111223333322
Q ss_pred -ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHHhcCCCcE
Q 009859 213 -EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPV 291 (523)
Q Consensus 213 -~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ 291 (523)
.+.|.+|++|.... +| +...+. .+.+++.+||. +.+....++..+...+... -....+...+|+.-.
T Consensus 146 ~~~~~~~l~IG~g~f--h~-~~l~l~-----~~~~v~~~dP~-~~~~~~e~~~~~~~~~l~~---R~~~i~ka~~a~~~G 213 (307)
T PF01866_consen 146 LDDDDAILFIGGGRF--HL-LGLMLS-----PGKPVYRYDPY-SKTLSVEDISYDIERLLRR---RYALIEKAKDAKTFG 213 (307)
T ss_dssp --S-SEEEEESSSSH--HH-HHHHHH-----H-SEEEEE-TT---T--EEE----THHHHHH---HHHHHHHHTT--EEE
T ss_pred cccccEEEEEcCCch--HH-HHHHHh-----cCCCEEEeCCC-cccceeecccccHHHHHHH---HHHHHHHHhcCCEEE
Confidence 57899999997531 22 222332 46799999997 3333333333333222111 011223345678888
Q ss_pred EEEcCCcccccCHHHHHHHHHHHHHH
Q 009859 292 IIVGAGLFERKDKDAIFSTVEAIAKK 317 (523)
Q Consensus 292 ii~g~~~~~~~~~~~~~~~~~~L~~~ 317 (523)
|++|.-..|+. -.+++.+..+...
T Consensus 214 Iiv~tl~~q~~--~~~~~~l~~~l~~ 237 (307)
T PF01866_consen 214 IIVGTLGGQGY--LELIKRLKKLLKK 237 (307)
T ss_dssp EEEE-STTT----HHHHHHHHHHHHH
T ss_pred EEEecCCCCCC--HHHHHHHHHHHHH
Confidence 88886444321 2345555555544
No 469
>PRK02947 hypothetical protein; Provisional
Probab=20.91 E-value=5.8e+02 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=27.1
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
..+..-|++|++-..... +-+...++.+ +++|+++|.|-...
T Consensus 102 ~~~~~~Dv~i~iS~sG~t--~~~i~~~~~a-~~~g~~vI~iT~~~ 143 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRN--PVPIEMALEA-KERGAKVIAVTSLA 143 (246)
T ss_pred cCCCCCCEEEEEeCCCCC--HHHHHHHHHH-HHCCCEEEEEcCCc
Confidence 456778999998654433 2233344454 45999999997643
No 470
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.90 E-value=1.9e+02 Score=26.75 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=24.5
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+.+-|++|++...-. .+-+...++.+. ++|+++|.|-..
T Consensus 111 ~~~~DllI~iS~SG~--t~~vi~a~~~Ak-~~G~~vI~iT~~ 149 (196)
T PRK13938 111 ARPGDTLFAISTSGN--SMSVLRAAKTAR-ELGVTVVAMTGE 149 (196)
T ss_pred CCCCCEEEEEcCCCC--CHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 456688877755432 233444555554 599999998653
No 471
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=20.79 E-value=46 Score=32.86 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=15.4
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|--||+|.+.||.||..
T Consensus 222 ~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 222 KCIGCGQCMEACPYGAVD 239 (354)
T ss_pred hccchhhhhhhccCcccc
Confidence 356799999999999984
No 472
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=20.74 E-value=60 Score=31.30 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=19.1
Q ss_pred cccceeeeecCCCCceEecCCCCCcCccccc----------cccccccc
Q 009859 10 AGVQDLGMLGRGSGEEIGTYVEKLMTSELSG----------NVIDICPV 48 (523)
Q Consensus 10 ~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~G----------n~idvCPv 48 (523)
+|...|| |.-+-+.+.-...-+-+|+| +|-||||-
T Consensus 113 ~gk~~iG----GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPd 157 (280)
T KOG2792|consen 113 AGKPAIG----GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPD 157 (280)
T ss_pred cCCCccC----CceEEEecCCCeecccccccceEEEEecccCCCCcChH
Confidence 4555555 55555554433333445676 67777773
No 473
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=20.66 E-value=69 Score=36.84 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=35.7
Q ss_pred cCccEEEEEcCCCCCC------------CCC-CCCceEEEEcccCCccc-CcceEEecCCCC
Q 009859 354 ESAKFVYLMGADDVDL------------EKL-PNDAFVVYQGHHGDHGV-YRANVILPASAF 401 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~~------------~~l-~~~~fvV~~d~~~t~ta-~~ADvvLP~a~~ 401 (523)
.+.+.++++|+||... ++. ++..-+|++|+..|+|+ ..||..||...-
T Consensus 230 ~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~irPG 291 (814)
T PRK14990 230 ENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPG 291 (814)
T ss_pred hhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCCCC
Confidence 4679999999998521 111 23346888999999997 589999998743
No 474
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=20.53 E-value=3.2e+02 Score=28.97 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCC-CCcHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcCcccCCCc--cccc
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGR-LSDAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNTSI--SGLE 213 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~-~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~di~ 213 (523)
-.|+.+++.||..+. -+.+.+|+ ..+ +.-..+..|.+..|-|...+...-..+ ...+|..+..|..- .-.+
T Consensus 217 ~eL~~A~~lik~ak~-PlIvaGGGv~YS-~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~ 294 (617)
T COG3962 217 RELADAAALIKSAKK-PLIVAGGGVLYS-GAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAE 294 (617)
T ss_pred HHHHHHHHHHHhcCC-CEEEecCceeec-hHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhh
Confidence 445566666666542 34334444 222 334568899999998877665443322 33445444444222 2347
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
+||+||-+|.-...=..- . +...+..+.|++.|+-..-.
T Consensus 295 ~ADlVigiGTR~~DFTTg-S---~alF~~~~~k~l~lNV~~~d 333 (617)
T COG3962 295 EADLVIGIGTRLQDFTTG-S---KALFKNPGVKFLNLNVQPFD 333 (617)
T ss_pred hcCEEEEecccccccccc-c---HHHhcCCCceEEEeeccccc
Confidence 999999999753321110 1 11123467888888764433
No 475
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.47 E-value=7.4e+02 Score=23.47 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=49.2
Q ss_pred cccCCEEEEEcCCCCcch----hhHHHHHHHHHHh---CCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHH
Q 009859 212 LEKADCFLLVGTQPRVEA----AMVNARIRKTVRA---NNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAI 284 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~----p~~~~~lr~a~~~---~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l 284 (523)
+++.|+|++...||.... |-...++|+..+. +|-..+-||= |.+ .+.++.+
T Consensus 129 l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDG-----------GI~-----------~~t~~~~ 186 (220)
T COG0036 129 LDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDG-----------GIN-----------LETIKQL 186 (220)
T ss_pred HhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeC-----------CcC-----------HHHHHHH
Confidence 468999999999998874 4445566655331 2233444442 222 2345566
Q ss_pred hcCCCcEEEEcCCcccccCHHHHHHHH
Q 009859 285 SNAKNPVIIVGAGLFERKDKDAIFSTV 311 (523)
Q Consensus 285 ~~a~~~~ii~g~~~~~~~~~~~~~~~~ 311 (523)
..|.--+++.|+.+....+....++.+
T Consensus 187 ~~AGad~~VaGSalF~~~d~~~~i~~~ 213 (220)
T COG0036 187 AAAGADVFVAGSALFGADDYKATIREL 213 (220)
T ss_pred HHcCCCEEEEEEEEeCCccHHHHHHHH
Confidence 678888999999888776644444433
No 476
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=20.27 E-value=43 Score=33.85 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.5
Q ss_pred CcCcccccccccccccCcc
Q 009859 33 LMTSELSGNVIDICPVGAL 51 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAl 51 (523)
...|..||+|.++||.|.-
T Consensus 208 iw~C~~C~~C~~~CPk~I~ 226 (329)
T PRK12577 208 VWGCTRCYYCNSVCPMEVA 226 (329)
T ss_pred cccCcChhhhhhhCCCCCc
Confidence 4578999999999999874
No 477
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=20.20 E-value=1.3e+02 Score=32.93 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.+|++|+|++|.|.. + ....+..|+..+|.
T Consensus 192 ~~a~~~L~~A~rPvii~G~g~~---~---a~~~l~~lae~~g~ 228 (578)
T PRK06546 192 RALADAINEAKKVTLFAGAGVR---G---AHAEVLALAEKIKA 228 (578)
T ss_pred HHHHHHHHcCCCcEEEECcchH---H---HHHHHHHHHHHhCc
Confidence 4567899999999999999885 1 23445666766654
Done!