Query 009859
Match_columns 523
No_of_seqs 312 out of 2301
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 14:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_3 NADH-quinone oxidoreduc 100.0 5.7E-87 2E-91 743.4 36.4 441 1-461 186-667 (783)
2 2iv2_X Formate dehydrogenase H 100.0 6.4E-70 2.2E-74 604.9 35.8 398 65-465 1-512 (715)
3 2nap_A Protein (periplasmic ni 100.0 6.5E-69 2.2E-73 598.1 34.7 396 65-463 6-529 (723)
4 3ml1_A NAPA, periplasmic nitra 100.0 1.4E-68 4.9E-73 596.9 25.7 382 62-445 9-546 (802)
5 1h0h_A Formate dehydrogenase ( 100.0 7.6E-68 2.6E-72 603.4 31.7 398 59-459 4-656 (977)
6 1kqf_A FDH-N alpha, formate de 100.0 2.5E-66 8.4E-71 593.0 31.0 398 61-460 39-699 (1015)
7 2e7z_A Acetylene hydratase AHY 100.0 9.7E-67 3.3E-71 580.6 25.3 391 67-460 1-522 (727)
8 2vpz_A Thiosulfate reductase; 100.0 8.4E-65 2.9E-69 567.4 27.5 385 65-460 37-549 (765)
9 1g8k_A Arsenite oxidase; molyb 100.0 1.7E-64 5.7E-69 569.0 28.4 397 57-459 6-606 (825)
10 4aay_A AROA; oxidoreductase, r 100.0 6.5E-63 2.2E-67 551.7 29.2 409 60-472 12-652 (845)
11 2ivf_A Ethylbenzene dehydrogen 100.0 3.5E-61 1.2E-65 549.0 24.1 375 66-444 76-700 (976)
12 1q16_A Respiratory nitrate red 100.0 5.7E-59 1.9E-63 530.2 31.9 385 55-442 24-834 (1247)
13 1ti6_A Pyrogallol hydroxytrans 100.0 8E-59 2.7E-63 525.8 19.1 388 66-460 3-621 (875)
14 1eu1_A Dimethyl sulfoxide redu 100.0 1.7E-56 6E-61 501.5 21.8 363 74-445 9-525 (780)
15 1tmo_A TMAO reductase, trimeth 100.0 2.3E-55 7.7E-60 495.6 22.7 359 79-445 48-565 (829)
16 3c8y_A Iron hydrogenase 1; dit 97.6 7.9E-06 2.7E-10 87.5 -0.6 62 1-64 152-216 (574)
17 1jb0_C Photosystem I iron-sulf 96.0 0.0011 3.9E-08 50.6 0.2 34 34-67 45-78 (80)
18 1dwl_A Ferredoxin I; electron 94.4 0.017 5.8E-07 40.8 2.0 18 35-52 40-57 (59)
19 3cf4_G Acetyl-COA decarboxylas 94.2 0.18 6.1E-06 44.5 8.8 116 143-266 24-155 (170)
20 1f2g_A Ferredoxin II; electron 93.8 0.01 3.6E-07 41.9 -0.1 18 35-52 39-56 (58)
21 1rof_A Ferredoxin; electron tr 93.0 0.018 6.2E-07 40.8 0.1 19 35-53 40-58 (60)
22 1dax_A Ferredoxin I; electron 92.0 0.013 4.5E-07 42.4 -1.9 19 35-53 43-61 (64)
23 1hfe_L Protein (Fe-only hydrog 91.7 0.039 1.3E-06 56.4 0.6 20 35-54 34-53 (421)
24 2c42_A Pyruvate-ferredoxin oxi 91.5 0.025 8.5E-07 65.5 -1.2 25 33-57 741-767 (1231)
25 1xer_A Ferredoxin; electron tr 91.4 0.04 1.4E-06 44.1 0.3 20 35-54 44-63 (103)
26 1sj1_A Ferredoxin; thermostabi 90.8 0.018 6.1E-07 41.8 -2.2 18 36-53 46-63 (66)
27 2fdn_A Ferredoxin; electron tr 88.1 0.1 3.4E-06 36.2 0.1 18 35-52 36-53 (55)
28 1iqz_A Ferredoxin; iron-sulfer 87.3 0.083 2.8E-06 40.2 -0.8 27 36-62 51-77 (81)
29 1h98_A Ferredoxin; electron tr 86.9 0.14 4.8E-06 38.5 0.4 21 35-55 38-58 (78)
30 1bc6_A 7-Fe ferredoxin; electr 86.8 0.14 4.7E-06 38.4 0.3 21 35-55 38-58 (77)
31 7fd1_A FD1, protein (7-Fe ferr 86.6 0.2 7E-06 40.2 1.2 21 35-55 38-58 (106)
32 2wdq_B Succinate dehydrogenase 86.4 0.11 3.6E-06 48.8 -0.7 24 32-55 202-225 (238)
33 2v2k_A Ferredoxin; iron, trans 85.8 0.24 8.2E-06 39.6 1.2 22 34-55 37-58 (105)
34 2fgo_A Ferredoxin; allochromat 85.1 0.3 1E-05 37.0 1.4 20 35-54 7-26 (82)
35 3i9v_9 NADH-quinone oxidoreduc 85.1 0.17 6E-06 44.8 0.0 23 33-55 95-117 (182)
36 1bc6_A 7-Fe ferredoxin; electr 83.7 0.36 1.2E-05 36.1 1.3 16 39-54 13-28 (77)
37 2zvs_A Uncharacterized ferredo 83.3 0.48 1.6E-05 36.2 1.9 20 35-54 7-26 (85)
38 1rgv_A Ferredoxin; electron tr 83.3 0.43 1.5E-05 35.9 1.6 20 35-54 7-26 (80)
39 2fdn_A Ferredoxin; electron tr 82.4 0.57 1.9E-05 32.2 1.8 20 35-54 7-26 (55)
40 3eun_A Ferredoxin; electron tr 82.0 0.54 1.9E-05 35.6 1.7 19 36-54 8-26 (82)
41 1rgv_A Ferredoxin; electron tr 81.2 0.32 1.1E-05 36.7 0.1 22 34-55 35-62 (80)
42 1jnr_B Adenylylsulfate reducta 80.2 0.34 1.2E-05 41.7 0.0 22 35-56 46-67 (150)
43 2fgo_A Ferredoxin; allochromat 79.6 0.38 1.3E-05 36.4 0.1 21 35-55 36-62 (82)
44 3eun_A Ferredoxin; electron tr 78.9 0.38 1.3E-05 36.5 -0.1 21 35-55 36-62 (82)
45 1jb0_C Photosystem I iron-sulf 78.6 0.31 1.1E-05 36.5 -0.7 21 35-55 9-29 (80)
46 1h98_A Ferredoxin; electron tr 78.2 0.46 1.6E-05 35.6 0.2 16 39-54 13-28 (78)
47 3eya_A Pyruvate dehydrogenase 77.1 3.8 0.00013 43.1 7.0 102 140-254 188-295 (549)
48 3gyx_B Adenylylsulfate reducta 75.6 0.57 1.9E-05 41.1 0.0 23 35-57 45-67 (166)
49 3lq1_A 2-succinyl-5-enolpyruvy 74.7 5.9 0.0002 41.9 7.7 108 140-255 211-325 (578)
50 7fd1_A FD1, protein (7-Fe ferr 73.7 0.8 2.7E-05 36.6 0.5 21 35-55 7-29 (106)
51 2vpz_B NRFC protein; oxidoredu 73.6 1.2 4.1E-05 40.1 1.6 20 35-54 57-78 (195)
52 3i9v_9 NADH-quinone oxidoreduc 72.4 1.4 4.8E-05 38.8 1.8 20 35-54 52-71 (182)
53 1ozh_A ALS, acetolactate synth 72.2 5 0.00017 42.4 6.4 107 140-255 194-308 (566)
54 1q16_B Respiratory nitrate red 72.2 1.4 4.8E-05 45.7 2.0 16 36-51 217-232 (512)
55 1gte_A Dihydropyrimidine dehyd 71.9 0.76 2.6E-05 52.5 -0.2 21 35-55 952-975 (1025)
56 3cf4_G Acetyl-COA decarboxylas 71.6 4.1 0.00014 35.6 4.6 40 277-320 24-63 (170)
57 2zvs_A Uncharacterized ferredo 71.4 0.74 2.5E-05 35.1 -0.2 21 35-55 36-63 (85)
58 3or1_B Sulfite reductase beta; 70.3 0.94 3.2E-05 45.5 0.1 19 35-53 257-275 (386)
59 2v2k_A Ferredoxin; iron, trans 70.1 0.92 3.2E-05 36.1 0.0 19 36-54 8-28 (105)
60 1hfe_L Protein (Fe-only hydrog 70.0 1 3.4E-05 45.9 0.3 22 34-55 64-86 (421)
61 3mm5_A Sulfite reductase, diss 69.3 1.2 4E-05 45.1 0.6 19 36-54 257-275 (418)
62 3mm5_B Sulfite reductase, diss 68.2 1.1 3.9E-05 44.5 0.3 15 138-152 295-309 (366)
63 2c42_A Pyruvate-ferredoxin oxi 67.8 1.9 6.5E-05 49.9 2.0 20 35-54 687-706 (1231)
64 1xer_A Ferredoxin; electron tr 66.2 1.2 4.1E-05 35.1 -0.1 14 39-52 86-99 (103)
65 1t9b_A Acetolactate synthase, 65.6 6.9 0.00024 42.3 5.8 113 140-254 276-400 (677)
66 2pan_A Glyoxylate carboligase; 63.7 8.6 0.00029 41.0 6.1 108 140-254 213-328 (616)
67 4feg_A Pyruvate oxidase; carba 63.0 6.6 0.00022 41.8 5.0 106 140-255 199-310 (603)
68 2iht_A Carboxyethylarginine sy 62.6 7.3 0.00025 41.1 5.2 110 138-255 201-323 (573)
69 2x7j_A 2-succinyl-5-enolpyruvy 62.6 18 0.00062 38.3 8.4 109 140-255 230-345 (604)
70 3cf4_A Acetyl-COA decarboxylas 62.3 0.24 8.1E-06 54.7 -6.6 52 1-55 422-474 (807)
71 2pgn_A Cyclohexane-1,2-dione h 62.2 3.9 0.00013 43.4 3.0 106 141-254 193-305 (589)
72 3trj_A Phosphoheptose isomeras 62.0 29 0.00099 30.9 8.4 109 139-252 32-149 (201)
73 1kf6_B Fumarate reductase iron 61.6 1.8 6.1E-05 40.3 0.2 22 32-53 200-221 (243)
74 2ivf_B Ethylbenzene dehydrogen 60.8 1.9 6.5E-05 42.6 0.2 20 35-54 150-171 (352)
75 1ytl_A Acetyl-COA decarboxylas 59.8 24 0.00081 30.8 7.2 114 134-256 19-147 (174)
76 1x92_A APC5045, phosphoheptose 58.8 53 0.0018 28.7 9.7 40 211-253 110-149 (199)
77 1h0h_B Formate dehydrogenase ( 58.7 1.2 4.1E-05 40.8 -1.6 22 33-54 69-95 (214)
78 1ybh_A Acetolactate synthase, 58.6 11 0.00036 40.0 5.6 109 140-256 201-315 (590)
79 2yva_A DNAA initiator-associat 57.6 53 0.0018 28.6 9.5 108 140-253 28-145 (196)
80 3k35_A NAD-dependent deacetyla 55.9 9.4 0.00032 36.9 4.2 49 210-261 202-250 (318)
81 2iv2_X Formate dehydrogenase H 55.2 8.1 0.00028 42.0 4.1 48 353-400 164-220 (715)
82 1q16_B Respiratory nitrate red 55.2 2 7E-05 44.5 -0.7 22 34-55 242-272 (512)
83 3u31_A SIR2A, transcriptional 54.9 13 0.00045 35.4 5.0 44 210-256 212-255 (290)
84 1s5p_A NAD-dependent deacetyla 54.8 13 0.00044 34.3 4.8 44 211-257 164-207 (235)
85 1m3s_A Hypothetical protein YC 54.8 93 0.0032 26.7 10.5 91 141-253 25-115 (186)
86 1jnr_B Adenylylsulfate reducta 54.7 2.5 8.6E-05 36.2 -0.1 20 35-54 9-33 (150)
87 1ti6_B Pyrogallol hydroxytrans 53.6 2.8 9.4E-05 39.9 -0.0 16 36-51 99-114 (274)
88 1kqf_B FDH-N beta S, formate d 53.5 3.3 0.00011 39.8 0.5 19 35-53 99-120 (294)
89 3fxa_A SIS domain protein; str 53.4 38 0.0013 29.8 7.7 98 140-253 31-128 (201)
90 3gyx_B Adenylylsulfate reducta 53.3 2.7 9.1E-05 36.7 -0.2 21 35-55 8-33 (166)
91 2uz1_A Benzaldehyde lyase; thi 53.2 13 0.00045 39.0 5.2 107 140-254 191-305 (563)
92 1jeo_A MJ1247, hypothetical pr 52.9 73 0.0025 27.2 9.4 91 141-253 28-118 (180)
93 1vim_A Hypothetical protein AF 52.5 73 0.0025 28.0 9.5 92 140-253 34-125 (200)
94 1kqf_A FDH-N alpha, formate de 51.8 11 0.00039 42.7 4.7 49 353-401 220-278 (1015)
95 2h88_B Succinate dehydrogenase 51.5 3.6 0.00012 38.5 0.4 21 32-52 211-231 (252)
96 3etn_A Putative phosphosugar i 51.2 75 0.0026 28.4 9.5 98 141-253 42-144 (220)
97 3mm5_B Sulfite reductase, diss 51.1 3 0.0001 41.5 -0.2 15 40-54 214-228 (366)
98 1v5e_A Pyruvate oxidase; oxido 50.3 17 0.00059 38.4 5.6 105 140-254 192-302 (590)
99 1ti6_B Pyrogallol hydroxytrans 50.0 5.3 0.00018 37.9 1.3 20 34-54 66-87 (274)
100 3riy_A NAD-dependent deacetyla 49.6 13 0.00046 35.0 4.1 50 210-262 208-257 (273)
101 3or1_B Sulfite reductase beta; 49.3 3.8 0.00013 41.0 0.2 15 39-53 224-238 (386)
102 1kqf_B FDH-N beta S, formate d 49.3 3.7 0.00013 39.4 0.2 21 35-55 132-152 (294)
103 1h0h_B Formate dehydrogenase ( 49.1 3.5 0.00012 37.6 -0.1 22 34-55 135-165 (214)
104 2bs2_B Quinol-fumarate reducta 48.8 3.8 0.00013 38.0 0.1 23 31-53 203-225 (241)
105 3j20_B 30S ribosomal protein S 48.6 1.1E+02 0.0039 27.2 9.8 107 141-266 50-158 (202)
106 1m2k_A Silent information regu 48.3 20 0.00067 33.3 5.0 49 210-261 173-221 (249)
107 2ivf_B Ethylbenzene dehydrogen 48.3 3.7 0.00013 40.4 -0.0 21 35-55 183-203 (352)
108 3sho_A Transcriptional regulat 48.1 72 0.0025 27.4 8.6 99 140-254 26-124 (187)
109 1yc5_A NAD-dependent deacetyla 45.7 16 0.00055 33.8 4.0 49 210-261 176-224 (246)
110 2vpz_B NRFC protein; oxidoredu 44.7 4.4 0.00015 36.3 -0.2 16 36-51 90-105 (195)
111 2xhz_A KDSD, YRBH, arabinose 5 44.1 51 0.0017 28.3 6.9 97 141-253 36-132 (183)
112 3pki_A NAD-dependent deacetyla 43.9 12 0.00041 36.7 2.8 45 210-257 202-246 (355)
113 1ma3_A SIR2-AF2, transcription 43.9 16 0.00056 34.0 3.7 49 210-261 179-227 (253)
114 2q28_A Oxalyl-COA decarboxylas 43.1 15 0.00051 38.6 3.7 106 140-254 198-305 (564)
115 3vr8_B Iron-sulfur subunit of 43.0 7.1 0.00024 37.1 1.0 23 32-54 235-257 (282)
116 2vk8_A Pyruvate decarboxylase 42.9 17 0.00058 38.1 4.1 86 140-227 198-291 (563)
117 1ytl_A Acetyl-COA decarboxylas 41.0 18 0.00062 31.6 3.3 36 277-317 24-60 (174)
118 1vi6_A 30S ribosomal protein S 40.9 1.2E+02 0.0042 27.0 8.8 107 141-266 54-162 (208)
119 2c31_A Oxalyl-COA decarboxylas 40.0 18 0.00061 38.0 3.7 83 140-225 200-283 (568)
120 1h0h_A Formate dehydrogenase ( 39.3 9.1 0.00031 43.3 1.3 49 353-401 182-239 (977)
121 3or1_A Sulfite reductase alpha 37.9 7.1 0.00024 39.5 0.1 38 38-82 276-316 (437)
122 2vbi_A Pyruvate decarboxylase; 37.0 31 0.0011 36.1 5.0 108 140-254 196-311 (566)
123 2vpz_A Thiosulfate reductase; 36.1 17 0.00059 39.7 2.9 49 353-401 197-255 (765)
124 2wvg_A PDC, pyruvate decarboxy 34.4 36 0.0012 35.7 4.9 108 140-254 196-311 (568)
125 2ivf_A Ethylbenzene dehydrogen 34.3 10 0.00034 43.0 0.6 49 353-401 244-301 (976)
126 2nxw_A Phenyl-3-pyruvate decar 33.0 26 0.0009 36.7 3.6 86 140-227 209-302 (565)
127 2nap_A Protein (periplasmic ni 32.9 11 0.00038 40.9 0.7 49 353-401 164-223 (723)
128 3hww_A 2-succinyl-5-enolpyruvy 32.4 90 0.0031 32.5 7.6 91 156-254 220-313 (556)
129 3f2g_A Alkylmercury lyase; MER 32.1 34 0.0012 31.0 3.7 29 66-96 111-139 (220)
130 3or1_A Sulfite reductase alpha 32.0 10 0.00034 38.4 0.1 17 35-51 302-318 (437)
131 2a3n_A Putative glucosamine-fr 31.7 1.5E+02 0.0052 28.6 8.8 99 140-253 39-138 (355)
132 3mm5_A Sulfite reductase, diss 31.2 11 0.00037 38.0 0.2 20 35-54 285-304 (418)
133 1q6z_A BFD, BFDC, benzoylforma 29.1 33 0.0011 35.6 3.5 85 140-227 187-279 (528)
134 1q16_A Respiratory nitrate red 28.5 12 0.0004 43.3 -0.1 47 354-400 245-300 (1247)
135 3c8y_A Iron hydrogenase 1; dit 26.7 9.3 0.00032 40.4 -1.3 21 35-55 146-170 (574)
136 2e7z_A Acetylene hydratase AHY 26.7 64 0.0022 34.9 5.4 46 215-262 406-451 (727)
137 2pa8_D DNA-directed RNA polyme 26.4 12 0.00041 35.2 -0.4 18 34-52 201-218 (265)
138 3l18_A Intracellular protease 26.1 1.4E+02 0.0047 25.0 6.6 95 156-251 3-102 (168)
139 1ovm_A Indole-3-pyruvate decar 25.6 31 0.001 36.0 2.5 87 140-227 196-289 (552)
140 2vbf_A Branched-chain alpha-ke 24.1 37 0.0013 35.6 2.8 87 140-227 215-308 (570)
141 3ot1_A 4-methyl-5(B-hydroxyeth 23.8 1.4E+02 0.0048 26.3 6.4 96 156-252 10-112 (208)
142 2pa8_D DNA-directed RNA polyme 23.7 17 0.00057 34.2 -0.0 17 37-53 174-190 (265)
143 2wvg_A PDC, pyruvate decarboxy 23.7 73 0.0025 33.3 5.0 39 277-319 199-237 (568)
144 3fqm_A NS5A, non-structural pr 23.0 67 0.0023 27.4 3.5 31 61-95 15-46 (177)
145 2i2w_A Phosphoheptose isomeras 23.0 3.8E+02 0.013 23.3 10.2 40 211-253 128-167 (212)
146 1ybh_A Acetolactate synthase, 22.9 55 0.0019 34.4 3.9 38 277-320 204-241 (590)
147 2vbi_A Pyruvate decarboxylase; 22.8 80 0.0027 32.9 5.1 40 277-320 199-238 (566)
148 2xhz_A KDSD, YRBH, arabinose 5 22.4 1.9E+02 0.0066 24.4 6.9 31 374-404 123-153 (183)
149 4e08_A DJ-1 beta; flavodoxin-l 22.3 1.6E+02 0.0054 25.4 6.3 43 208-251 59-107 (190)
150 2x7j_A 2-succinyl-5-enolpyruvy 22.0 77 0.0026 33.4 4.8 39 277-320 233-271 (604)
151 3ml1_A NAPA, periplasmic nitra 22.0 22 0.00076 39.1 0.5 49 214-262 446-494 (802)
152 1tk9_A Phosphoheptose isomeras 22.0 3.6E+02 0.012 22.7 8.8 38 212-252 108-145 (188)
153 2bs2_B Quinol-fumarate reducta 21.3 13 0.00043 34.3 -1.4 18 35-52 150-167 (241)
154 1eiw_A Hypothetical protein MT 21.2 1.1E+02 0.0037 24.4 4.4 45 210-255 34-78 (111)
155 2wdq_B Succinate dehydrogenase 21.0 25 0.00085 32.2 0.6 19 35-53 148-166 (238)
156 2gmh_A Electron transfer flavo 20.8 21 0.00072 37.7 0.0 39 37-77 519-558 (584)
157 2h88_B Succinate dehydrogenase 20.7 24 0.00081 32.8 0.4 19 35-53 157-175 (252)
158 3tyg_A Envelope glycoprotein G 20.3 1.2E+02 0.0041 26.9 4.8 35 136-170 124-160 (199)
159 2gmh_A Electron transfer flavo 20.2 21 0.00072 37.7 -0.1 22 34-55 551-572 (584)
160 1ozh_A ALS, acetolactate synth 20.0 80 0.0027 32.9 4.4 39 278-320 198-236 (566)
No 1
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=100.00 E-value=5.7e-87 Score=743.42 Aligned_cols=441 Identities=28% Similarity=0.398 Sum_probs=397.7
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN 80 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~ 80 (523)
||||+|.|++|..+|++.+||.+++|++. +..+.|.+||||+++||||||++|+|+|++|+|++++++|+|++|+.||+
T Consensus 186 ~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~-~~~~~C~~CG~Cv~vCP~gAl~~~~~~~~~r~w~~~~~~s~C~~C~~gC~ 264 (783)
T 3i9v_3 186 RCVRYFEEVPGDEVLDFIERGVHTFIGTM-DFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCG 264 (783)
T ss_dssp HHHHHHHHTTCCCCCEECSCTTSCCEECS-STTCCSTTTTTHHHHCSSSSEEEGGGTTSCCTTTSEEEEEECCSSSSCCE
T ss_pred HHHHHhhhhcCCceeeeecCCCccEEccC-CCCCCCccchhHHhhcccCceeccccccccccccceEEEEeCCCCCCccc
Confidence 69999999999999999999999999984 45679999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEE
Q 009859 81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVG 160 (523)
Q Consensus 81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~ 160 (523)
+.+++++|+|+||+|++++++|++|+|+||||+++++|.+||++||+|+ +|+|++|||||||++||++|++++++++++
T Consensus 265 i~v~v~~g~v~rv~~~~~~p~n~g~lC~kGr~~~~~~~~dRL~~Pl~R~-~G~~~~iSWdeAl~~ia~~L~~i~~~~i~~ 343 (783)
T 3i9v_3 265 ITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGL 343 (783)
T ss_dssp EEEEEETBEEEEEEECCCTTSSCSCCCHHHHHTTTTTTTSCCCSCEEES-SSSEEECCHHHHHHHHHHHHHTCCTTSEEE
T ss_pred ceeeeECCEEEeccCCCCCCCCCCccChhhhhHhhhhhhccccCceEcc-CCceeEeCHHHHHHHHHHHHHhhccCCEEE
Confidence 9999999999999999999999999999999999999779999999998 799999999999999999999998889999
Q ss_pred EeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHH
Q 009859 161 IAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTV 240 (523)
Q Consensus 161 ~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~ 240 (523)
++|+..++|+.+++++|++.+|++|+++..+.|.... ...+.++.|+++||+||+|| ||.+++|+++.|+|+++
T Consensus 344 ~~s~~~t~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~-----~~~~~~~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~ 417 (783)
T 3i9v_3 344 YLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPAS-----LFPPASLEDLLQADFALVLG-DPTEEAPILHLRLSEFV 417 (783)
T ss_dssp EECTTCCTTHHHHHHHHHHHTTCSCEEETTCCSSCGG-----GSCBCCHHHHHHCSCEEEES-CHHHHSTHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCCcccCCchhhhhhc-----cCCCCCHHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHH
Confidence 9999999999999999999999999998876654321 12346899999999999999 99999999999999986
Q ss_pred H------------------------hCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHHcC------cHHHHHHH
Q 009859 241 R------------------------ANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIAEG------RHPFFSAI 284 (523)
Q Consensus 241 ~------------------------~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~~g------i~~~a~~l 284 (523)
+ ++|+||++|||+.+.++..++ ||+|.+.+..++.. |+++|+.|
T Consensus 418 ~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l~i~PGtD~all~al~~~li~~e~i~~~A~~l 497 (783)
T 3i9v_3 418 RDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAW 497 (783)
T ss_dssp TTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEEECCSSCHHHHHHHHHTSSCCCHHHHHHHHHH
T ss_pred HhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcceEecCCCcHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3 578999999999999988775 79999988887643 57899999
Q ss_pred hcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCccc----cccCccEEE
Q 009859 285 SNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN----SIESAKFVY 360 (523)
Q Consensus 285 ~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~----~~~~i~~l~ 360 (523)
+++++++|++|+++.+|.++..+ +++ ++|++| .|++++++++|.+|+.++|..|.... ..+ +|++|
T Consensus 498 a~a~~~~I~~G~g~~~~~~~~~~-----~~~-l~g~~G---~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~g-ikal~ 567 (783)
T 3i9v_3 498 EKAKNPVLILGAGVLQDTVAAER-----ARL-LAERKG---AKVLAMTPAANARGLEAMGVLPGAKGASWDEPG-ALYAY 567 (783)
T ss_dssp HHCSSCEEEECSHHHHCHHHHHH-----HHH-HHHHTT---CCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCC-CSEEE
T ss_pred HhCCCcEEEECchhhhcHHHHHH-----HHH-HhcccC---CCeeeccCcchhhhhhhcCCCCCchhhhhhcCC-CeEEE
Confidence 99999999999999988766432 222 555553 68888999999999999998885421 134 99999
Q ss_pred EEcCCCCCCCCCCCCceEEEEcccCCccc-CcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHH
Q 009859 361 LMGADDVDLEKLPNDAFVVYQGHHGDHGV-YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALS 439 (523)
Q Consensus 361 ~~g~n~~~~~~l~~~~fvV~~d~~~t~ta-~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La 439 (523)
++|.||+. .|++++|+|++|+|+|+|+ ++||||||+++|+|++|||+|+||++|+++++++|+||+|+||+||++||
T Consensus 568 v~g~np~~--~L~~~~fvVv~d~~~t~ta~~~ADvvLP~a~~~E~~gt~~n~eg~~~~~~~~v~p~ge~r~d~~il~~La 645 (783)
T 3i9v_3 568 YGFVPPEE--ALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLA 645 (783)
T ss_dssp ESSCCCHH--HHTTCSEEEECCSSCCTTTTTTCSEECCCCCGGGCCEEEECTTSBEEEECCCCBCCCSCCCHHHHHHHHH
T ss_pred EeCCCHHH--HHhhCCEEEEEeCcCCchhhhCCcEEecCCcccccCCeEEccCCcEEEeccccCCCCCCccHHHHHHHHH
Confidence 99999964 3889999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCHHHHHHHHHHh
Q 009859 440 EVAGMRLPYDTIGGIRSRIRTV 461 (523)
Q Consensus 440 ~~lg~~~~~~~~~~i~~~~~~~ 461 (523)
++||++.+|.+.+++++++.+.
T Consensus 646 ~~lG~~~~~~~~~~~~~~l~~~ 667 (783)
T 3i9v_3 646 EALGVRPPFRLHLEAQKALKAR 667 (783)
T ss_dssp HTTSSCCSCCSHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHhc
Confidence 9999999998888887777665
No 2
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=100.00 E-value=6.4e-70 Score=604.86 Aligned_cols=398 Identities=22% Similarity=0.343 Sum_probs=349.2
Q ss_pred ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CC----CCCCcEEeCC-CCCeeEcC
Q 009859 65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQ----RLNDPMIRGA-DGRFKAVN 138 (523)
Q Consensus 65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~----Rl~~Pl~R~g-~g~~~~is 138 (523)
|+.++|+|++|+.||+|.|++++|+|+||+|+++ |+|+|++|+||+++++.+| |+ ||++||+|++ +|+|++||
T Consensus 1 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~-p~n~g~lC~kg~~~~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~is 79 (715)
T 2iv2_X 1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQG-KTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVS 79 (715)
T ss_dssp CEEEEEECSSBTTCCEEEEEEETTEEEEEEECCC-TTTTTCCCHHHHHTTGGGGCCCSSSCBCCSCEECCSTTSCCEECC
T ss_pred CcEEEEECCCCCCCCCeEEEEECCEEEEEEeCCC-CCCCCCcChhhHHHHHHhcCccccchhccCCeEecCCCCCEEEee
Confidence 5789999999999999999999999999999999 9999999999999999986 88 9999999983 28999999
Q ss_pred HHHHHHHHHHHHHhcC----CCCEEEEeCCCCc-HHHHHHHHHHHH-HcCCCccccCCCccch------hhhhhcCcccC
Q 009859 139 WRDALAVVAEVMLQAK----PEEIVGIAGRLSD-AESMMALKDFLN-RMGSNNVWCEGTGAQS------NADLRSGYIMN 206 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~----~~~i~~~~g~~~~-~e~~~~~~~l~~-~lG~~~~~~~~~~~~~------~~~~~~~~~~~ 206 (523)
|||||++||++|++++ +++|+++.|+..+ +|+.+++++|++ .+|++|++++.+.|.. ...+|.. ..+
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~-~~~ 158 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNG-AMS 158 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCC-SCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCCC-CCC
Confidence 9999999999999875 3789888888777 899999999998 9999999987766532 2344432 234
Q ss_pred CCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHH-------
Q 009859 207 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEI------- 273 (523)
Q Consensus 207 ~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~------- 273 (523)
.++.|+++||+||+||+||.+++|++..+++++. ++|+|||+|||+.+.|+..++ ||+|.+.+..+
T Consensus 159 ~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~aL~~al~~~ii~~ 237 (715)
T 2iv2_X 159 NAINEIDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEE 237 (715)
T ss_dssp SCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred CCHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHH-HCCCeEEEEcCCCCchhHhhCEEeccCCCcHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999986 489999999999999988765 68876432111
Q ss_pred ---------------------H-----------cC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHH
Q 009859 274 ---------------------A-----------EG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAK 316 (523)
Q Consensus 274 ---------------------~-----------~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~ 316 (523)
+ +| |+++|++|+++++++|++|+++++|.+|.+..+++.+|+.
T Consensus 238 ~l~D~~fl~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ 317 (715)
T 2iv2_X 238 NLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAM 317 (715)
T ss_dssp TCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEEcccccccccHHHHHHHHHHHHH
Confidence 0 24 6889999999999999999999999999999999999999
Q ss_pred HcCCCCCCCCceeecchhhHHhhHHhcCCCCC----------------------------c---cc-------cccCccE
Q 009859 317 KGNVIRPDWNGLNVLLLNAAQAAALDLGLVPE----------------------------S---SN-------SIESAKF 358 (523)
Q Consensus 317 ~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~----------------------------~---~~-------~~~~i~~ 358 (523)
++|++|++|+|++.+++..|.+|+.++|..|. . .. ..++||+
T Consensus 318 l~G~ig~~Ggg~~~~~~~~n~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~g~ik~ 397 (715)
T 2iv2_X 318 LTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRA 397 (715)
T ss_dssp HTTCSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHHHHHTTCSCCCCSCCCCGGGHHHHHHTTSCCE
T ss_pred HhCCCCCCCCccCCCccccccccccccCcCcCCCCccccCCCHHHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHcCCceE
Confidence 99999999999999888888888877664221 1 00 2578999
Q ss_pred EEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCcc
Q 009859 359 VYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARD 430 (523)
Q Consensus 359 l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~ 430 (523)
+|++|+||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|+++|.++++|.++|+|+|+||+|+
T Consensus 398 l~~~g~Np~~~~p~~~~~~~al~~~d~~V~~d~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~ 477 (715)
T 2iv2_X 398 AYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKT 477 (715)
T ss_dssp EEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBCCBTTBCEEEECTTSEEEEECCCSCCSSSCBC
T ss_pred EEEeCCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhcCcEEccCCccccCCCcEeCCCceEEEEecccCCCcccCC
Confidence 9999999963 14577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCC
Q 009859 431 DWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNL 465 (523)
Q Consensus 431 d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~ 465 (523)
||+||++||++||.+++|.+.+++++++....|.+
T Consensus 478 d~~Il~~La~~lg~~~~~~~~~~~~~~~~~~~~~~ 512 (715)
T 2iv2_X 478 DWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDF 512 (715)
T ss_dssp HHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhCCcCCccCHHHHHHHHHhhCccc
Confidence 99999999999999989999999999998877754
No 3
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=100.00 E-value=6.5e-69 Score=598.09 Aligned_cols=396 Identities=15% Similarity=0.199 Sum_probs=344.4
Q ss_pred ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC-CCCCeeEcCHHHH
Q 009859 65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDA 142 (523)
Q Consensus 65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~g~~~~isWdeA 142 (523)
.++++|+|++|+.||+|.|++++|+|+||+|++++| |++++|+||+++++.+| |+||++||+|. ++|+|++||||||
T Consensus 6 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~~p-n~g~lC~kg~~~~~~~~~p~Rl~~Pl~R~~~~g~~~~isWdeA 84 (723)
T 2nap_A 6 EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGNPNNH-NAGLLCLKGSLLIPVLNSKERVTQPLVRRHKGGKLEPVSWDEA 84 (723)
T ss_dssp SEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTST-TTTCCCHHHHTCHHHHTCSCSCCSCEECSSTTSCCEECCHHHH
T ss_pred ceEEeEECCCCCCCCcEEEEEECCEEEEEEeCCCCC-CCCccchhHhhhHHhhcCchhhccCEeccCCCCCEEEecHHHH
Confidence 467999999999999999999999999999999999 99999999999999987 89999999995 4789999999999
Q ss_pred HHHHHHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHHH-cCCCccccCCCccchh------hhhhcCcccCCCccc
Q 009859 143 LAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGAQSN------ADLRSGYIMNTSISG 211 (523)
Q Consensus 143 l~~ia~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~~-lG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d 211 (523)
|++||++|++++ +++|++++|+..++|+.+++++|++. +|++|++++.+.|... ..+|.. ..+.++.|
T Consensus 85 l~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~-~~~~~~~d 163 (723)
T 2nap_A 85 LDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKD-EPMGTYAD 163 (723)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSC-SCSSCGGG
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCC-CCCCChhh
Confidence 999999999875 36899998888889999999999997 9999998877666432 234432 22357899
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhC-CCeEEEEcCCCCCCcchhc------cCCCHHHH--------------
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRAN-NAKVGYIGPATDLNYDHQH------LGTGPKTL-------------- 270 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~-g~klv~idp~~~~t~~~a~------~g~~~~~l-------------- 270 (523)
+++||+||+||+||.+++|.+..+++++++++ |+|||+|||+.+.|+..++ ||+|.+.+
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPGtD~al~~al~~~ii~~~l~D 243 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDN 243 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTTTHHHHHHHHHHHHHHTTCSC
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCCCcHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999987633 9999999999999998875 57765421
Q ss_pred -----------------------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHH
Q 009859 271 -----------------------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFST 310 (523)
Q Consensus 271 -----------------------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~ 310 (523)
+++ +| |+++|++|+++++++|++|+|+++|.+|.+..++
T Consensus 244 ~~fl~~~tn~~~g~~~~~gf~~l~~~~~~~tpe~~a~i-tGv~~~~i~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a 322 (723)
T 2nap_A 244 PRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEI-CRVPVEQIYGAARAFAESAATMSLWCMGINQRVQGVFANNL 322 (723)
T ss_dssp HHHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHH-HTSCHHHHHHHHHHHHHSSSEEEEECTTTSSSTTHHHHHHH
T ss_pred HHHHHHhhccccccccCcHHHHHHHHHhcCCHHHHHHH-HCcCHHHHHHHHHHHHhCCCeEEEeccccccchhHHHHHHH
Confidence 112 24 6789999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCceeecchhhHHhhH-HhcCCCCC------------------------------c---cc-----
Q 009859 311 VEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLGLVPE------------------------------S---SN----- 351 (523)
Q Consensus 311 ~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~-~~~g~~p~------------------------------~---~~----- 351 (523)
+.+|+.++|+++++|+|+..+.+..|.+|. .++|..|. . ..
T Consensus 323 ~~~L~~l~G~ig~~G~g~~~~~~~~n~~g~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 402 (723)
T 2nap_A 323 IHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFE 402 (723)
T ss_dssp HHHHHHHHTCCSBTTBEEEECCCSTTHHHHTTTTTCSTTEETTTEETTCHHHHHHHHHHHTCCTTCSCSSCCCCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCccCCCcccccccCcccccccCCCCCCccccCCCHHHHHHHHHHhCCCcccCCCCCCCCHHHHHH
Confidence 999999999999999999888888888876 44443211 0 00
Q ss_pred --cccCccEEEEEcCCCCC--------CCCCCC-CceEEEEcccC-CcccCcceEEecCCCCCCCCceeecCCCceEeec
Q 009859 352 --SIESAKFVYLMGADDVD--------LEKLPN-DAFVVYQGHHG-DHGVYRANVILPASAFSEKEGTYENTEGCTQQTL 419 (523)
Q Consensus 352 --~~~~i~~l~~~g~n~~~--------~~~l~~-~~fvV~~d~~~-t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~ 419 (523)
..+++|++|++|+||+. .++|++ ++|+|++|+|+ |+|+++||||||+++|+|++|+++|.++++|.++
T Consensus 403 ~~~~g~ik~l~~~g~Np~~~~p~~~~~~~al~~~~d~~V~~d~~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~ 482 (723)
T 2nap_A 403 ALGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLTE 482 (723)
T ss_dssp HHHHTSSCEEEEESCCHHHHSSSHHHHHHHHTCTTCEEEEECSCTTCGGGGTCSEEECBCCGGGSCEEEECTTSEEEEEC
T ss_pred HHhcCCceEEEEeCcCccccCCCHHHHHHHHhcCCCEEEEEecCCCCchHhhCcEEecCCcccccCcceecCCceEEEEe
Confidence 24689999999999963 246788 99999999999 9999999999999999999999999999999999
Q ss_pred CccCCCCCCccHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHhCC
Q 009859 420 PAVPTVGDARDDWKIIRALSEVAGMR---LPYDTIGGIRSRIRTVAP 463 (523)
Q Consensus 420 ~~v~p~ge~r~d~~Il~~La~~lg~~---~~~~~~~~i~~~~~~~~p 463 (523)
|+|+|+||+|+||+|+.+||++||.+ ++|++.+++++++.+..|
T Consensus 483 ~~v~P~ge~r~d~~Il~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~ 529 (723)
T 2nap_A 483 KAVDPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSK 529 (723)
T ss_dssp CCSCCCTTCBCHHHHHHHHHHHHTCCTTTTCCSSHHHHHHHHHHHHT
T ss_pred cccCCCcCCCcHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999987 678899999999876544
No 4
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=100.00 E-value=1.4e-68 Score=596.85 Aligned_cols=382 Identities=16% Similarity=0.154 Sum_probs=325.8
Q ss_pred cccceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC------CCCe
Q 009859 62 NWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA------DGRF 134 (523)
Q Consensus 62 ~Wel~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g------~g~~ 134 (523)
+=++++++|+|++|++||+|.++++||+|+||+|++++|+|.|++|.||++.++.++ |+||++||+|++ +|+|
T Consensus 9 ~~~~~~~~t~C~~C~~gC~i~v~v~~g~iv~v~g~~~~p~n~G~lC~KG~~~~~~~~~p~Rl~~Pl~R~~~G~~~~~g~~ 88 (802)
T 3ml1_A 9 VTKLKWSKAPCRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYGQDRLTRPLMRMKNGKYDKNGDF 88 (802)
T ss_dssp CCSSEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTCTTTTTCCCHHHHTGGGTTCBTTCCCSCEEEEETTEECTTSEE
T ss_pred CCCCeEEeEECCCCCCCCCeEEEEECCEEEEEEcCCCCCCcCcccChhhhhHHhhhcCcchhcCCeEeccCCCCCcCCCe
Confidence 446789999999999999999999999999999999999999999999999999997 999999999963 5899
Q ss_pred eEcCHHHHHHHHHHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHH-HcCCCccccCCCccchh------hhhhcCc
Q 009859 135 KAVNWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSN------ADLRSGY 203 (523)
Q Consensus 135 ~~isWdeAl~~ia~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~------~~~~~~~ 203 (523)
++|||||||++||++|++++ +++|++++++..++|+.+++++|++ .+|++|++.+.+.|... ..+|...
T Consensus 89 ~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~sg~~~~e~~~~~~kl~~~~~gt~n~d~~~~~c~~~~~~~~~~~~G~~~ 168 (802)
T 3ml1_A 89 APVTWDQAFDEMERQFKRVLKEKGPTAVGMFGSGQWTVWEGYAAAKLYKAGFRSNNIDPNARHCMASAAAGFMRTFGMDE 168 (802)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHTCGGGEEEEECTTSCHHHHHHHHHHHHTTTCCCCEEEGGGGTTHHHHHHHHHHHSSCS
T ss_pred EEeCHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCchHHHHHHHHHHHhhcCCccccCCcccchhhHHHhhHhhcCCCC
Confidence 99999999999999999874 3789988888888999999999998 49999999887776432 2344322
Q ss_pred ccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHH-hCCCeEEEEcCCCCCCcchhc------cCCCHHHH------
Q 009859 204 IMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR-ANNAKVGYIGPATDLNYDHQH------LGTGPKTL------ 270 (523)
Q Consensus 204 ~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~-~~g~klv~idp~~~~t~~~a~------~g~~~~~l------ 270 (523)
.. .++.|+++||+||+||+||.+++|+++.+++++.+ ++|+|||+||||++.|+..++ ||+|.+.+
T Consensus 169 ~~-~~~~d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~irPGtD~aL~~~m~~~ 247 (802)
T 3ml1_A 169 PM-GCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFKPQTDLAMLNYIANY 247 (802)
T ss_dssp CS-SCGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECCTTTHHHHHHHHHHH
T ss_pred CC-CCHHHHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEeccCCCHHHHHHHHHHHH
Confidence 22 36899999999999999999999999999988764 479999999999999988765 56654321
Q ss_pred --------------------------------------------------------------------HHHHcC-----c
Q 009859 271 --------------------------------------------------------------------LEIAEG-----R 277 (523)
Q Consensus 271 --------------------------------------------------------------------~~~~~g-----i 277 (523)
+++ +| |
T Consensus 248 ii~e~l~D~~Fv~~~t~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~gfe~l~~~v~~~tpe~~a~i-tGv~~~~I 326 (802)
T 3ml1_A 248 IIRNNKVNKDFVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSKL-SAVPKAKL 326 (802)
T ss_dssp HHHTTCCCHHHHHHHEEEEEECCCCCCSCCTTSHHHHHCSSTTSTTCEEEECHHHHHHHHHTSCHHHHHHH-HTCCHHHH
T ss_pred HHHCCCcCHHHHHHhhcccccccccccccccccccccccccccccccccCCcHHHHHHHHhhCCHHHHHHH-HCcCHHHH
Confidence 111 23 6
Q ss_pred HHHHHHHhcCCC-cEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhH-HhcCCCCC-------
Q 009859 278 HPFFSAISNAKN-PVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLGLVPE------- 348 (523)
Q Consensus 278 ~~~a~~l~~a~~-~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~-~~~g~~p~------- 348 (523)
+++|++|+++++ +++++|+|.++|.+|.+..+++.+|+.+||++|++|+|++.+.++.|.+|. .++|..+.
T Consensus 327 ~~lA~~~a~~~~~~~~~~~~G~~q~~~G~~~~~ai~~L~~ltGnig~pGgg~~~~~g~~n~~G~~~~~g~~~~~lp~~~~ 406 (802)
T 3ml1_A 327 DQLAELYADPNIKVMSLWTMGFNQHTRGTWANNMVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFSHRLPADMV 406 (802)
T ss_dssp HHHHHHHHCTTSCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCCSBTTBEEEECCCSTTTTTTHHHHTCSTTBCSTTCB
T ss_pred HHHHHHHHhcCCCEEEEecccccccchHHHHHHHHHHHHHHhCCCCCCCCCcCCCCCCCcccccccccccCcccCCCCcc
Confidence 789999998754 667789999999999999999999999999999999999888888887773 44442210
Q ss_pred --------------------------cc-------ccccCccEEEEEcCCCCC--C-------CCCCCCc-eEEEEcccC
Q 009859 349 --------------------------SS-------NSIESAKFVYLMGADDVD--L-------EKLPNDA-FVVYQGHHG 385 (523)
Q Consensus 349 --------------------------~~-------~~~~~i~~l~~~g~n~~~--~-------~~l~~~~-fvV~~d~~~ 385 (523)
.. ...++||++|++|+||+. + ++|++.+ |+|++|+|+
T Consensus 407 ~~~~~~~~~~~~~w~~p~~~~~~~~g~~~~~~~~~~~~g~ik~l~i~g~Np~~s~p~~~~~~~~al~~~~~f~Vv~D~~~ 486 (802)
T 3ml1_A 407 VTNPKHREEAERIWKLPPGTIPDKPGYDAVLQNRMLKDGKLNAYWVQVNNNMQAAANLMEEGLPGYRNPANFIVVSDAYP 486 (802)
T ss_dssp TTCHHHHHHHHHHTTCCTTCSCSSCCCCHHHHHHHHHHTSCCEEEEESCCHHHHSSCTTTTHHHHHHCTTCEEEEEESSC
T ss_pred CCCHHHHHHHHHHhCCCccccCCCCCCCHHHHHHHhhcCCcEEEEEeCCCHHhcCCCccHHHHHHHhcCCCeEEEEeecc
Confidence 00 034789999999999963 1 2355665 999999999
Q ss_pred CcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCC
Q 009859 386 DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR 445 (523)
Q Consensus 386 t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~ 445 (523)
|+|+++||||||+++|+|++|+++|.++++|+.+|+|+|+||+|+||+|+.+||++||.+
T Consensus 487 teTa~~ADivLPaa~~~Ek~g~~~n~~r~v~~~~~~v~P~gear~D~~I~~~La~rlG~~ 546 (802)
T 3ml1_A 487 TVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLVEFAKRFKVE 546 (802)
T ss_dssp CHHHHTCSEEEEEECGGGSCEEEECTTSEEEEECCCSCCSTTCEEHHHHHHHHHTTCBHH
T ss_pred CchHhhCcEEECCCCccccCceeecccceEEEeccCcCCCcCCCCHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999863
No 5
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=100.00 E-value=7.6e-68 Score=603.39 Aligned_cols=398 Identities=17% Similarity=0.175 Sum_probs=342.8
Q ss_pred ccccccceeeeeeeccCCCCCcEEEEE--ECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC-CCCCe
Q 009859 59 KARNWELKGTETIDVTDAVGSNIRIDS--RGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGRF 134 (523)
Q Consensus 59 ~aR~Wel~~~~siC~~C~~gC~i~v~v--r~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~g~~ 134 (523)
+.|+|+++.++|+|++|++||++.|++ ++|+|+||+|++++|+|+|++|.||++.++.++ |+||++||+|. |+|+|
T Consensus 4 ~~r~~~~~~~~t~C~~C~~gC~i~v~v~~~~g~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~rg~g~~ 83 (977)
T 1h0h_A 4 ALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQW 83 (977)
T ss_dssp CCTTTTSEEEEEECSSBTTCCEEEEEECTTTCCEEEEEECTTCTTTTTCCCHHHHTHHHHHSCTTSCSSCEEECTTCSSC
T ss_pred cccccccEEEEEECCCCcccCCEEEEEEccCCEEEEEEcCCCCCCCCCccCHHHHHHHHHhcCcccccCCEEeccCCCCe
Confidence 479999999999999999999999999 999999999999999999999999999999987 99999999996 56899
Q ss_pred eEcCHHHHHHHHHHHHHhcC----------------CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchh--
Q 009859 135 KAVNWRDALAVVAEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN-- 196 (523)
Q Consensus 135 ~~isWdeAl~~ia~~L~~~~----------------~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~-- 196 (523)
++|||||||++||++|++++ .+++++++|+..++|+.+++++|++.+|++|++++.+.|...
T Consensus 84 ~~iSWdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~ 163 (977)
T 1h0h_A 84 EEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATV 163 (977)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHH
T ss_pred eecCHHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHH
Confidence 99999999999999999874 246888888888899999999999999999998877666432
Q ss_pred ----hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCC
Q 009859 197 ----ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTG 266 (523)
Q Consensus 197 ----~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~ 266 (523)
..+|.. ..+.++.|+++||+||+||+||.+++|+...+++++. ++|+|||+||||++.|++.++ ||+|
T Consensus 164 ~~~~~~~G~~-~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~-~~G~klivIDPr~t~ta~~AD~~l~irPGTD 241 (977)
T 1h0h_A 164 AALAESYGRG-AMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAK-DKGATLIHVDPRYTRTSTKCDLYAPLRSGSD 241 (977)
T ss_dssp HHHHHHHSCC-SCSSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHH-HTTCEEEEECSSCCTTGGGCSEEECCCTTCH
T ss_pred HHHHHHhCCC-CCCCCHHHHhhCCEEEEECCChHHhCcHHHHHHHHHH-HCCCeEEEECCCCCchhHHhCeeeccCCCch
Confidence 234432 1234789999999999999999999999999999986 489999999999999998875 5665
Q ss_pred HHH-----------------------------------------------------------------------------
Q 009859 267 PKT----------------------------------------------------------------------------- 269 (523)
Q Consensus 267 ~~~----------------------------------------------------------------------------- 269 (523)
.+.
T Consensus 242 ~AL~~am~~~ii~~~l~D~~fv~~~t~~~~lV~~~~~~~~g~~~g~d~~~~~~~~~~~~~~l~~dg~~~~~~~l~~~~t~ 321 (977)
T 1h0h_A 242 IAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCV 321 (977)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHBGGGBBBCTTCCEETTEETTEETTTTEECGGGGCBCBCTTSCBCBCTTSCSTTBH
T ss_pred HHHHHHHHHHHHHCCcccHHHHHHhcccccccccccccccccccccccccccccccchhhhhcccccccccccccccccH
Confidence 432
Q ss_pred ---------------HHHHHcC-----cHHHHHHHhcC----CCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCC
Q 009859 270 ---------------LLEIAEG-----RHPFFSAISNA----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDW 325 (523)
Q Consensus 270 ---------------l~~~~~g-----i~~~a~~l~~a----~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g 325 (523)
++++ +| |+++|++|+++ ++++|++|+|..+|.+|.+..+++.+|+.+||++|++|
T Consensus 322 f~~l~~~~~~ytpe~aa~i-tGvp~~~I~~lA~~~a~~~~~~~~~~i~~g~G~~~~~~G~~~~~ai~~L~~ltGnig~~G 400 (977)
T 1h0h_A 322 FQIMKKHYERYDLDKISAI-CGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAG 400 (977)
T ss_dssp HHHHHHHHTTCCHHHHHHH-HCCCHHHHHHHHHHHHGGGSTTCCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTCSSSTT
T ss_pred HHHHHHHHHhCCHHHHHHH-HCcCHHHHHHHHHHHHhccCCCCceEEEEcccccccchHHHHHHHHHHHHHHhCCCCCCC
Confidence 2222 25 78999999998 88999999999999999999999999999999999999
Q ss_pred CceeecchhhHHhhHHhcCCC-----------------------------------------------------------
Q 009859 326 NGLNVLLLNAAQAAALDLGLV----------------------------------------------------------- 346 (523)
Q Consensus 326 ~g~~~l~~~~n~~g~~~~g~~----------------------------------------------------------- 346 (523)
+|++.++++.|.+|..++|..
T Consensus 401 gg~~~~~g~~n~~g~~d~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 480 (977)
T 1h0h_A 401 GGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLN 480 (977)
T ss_dssp CSEEECCSBTTHHHHHHTTCBTTEETTTEECCBTTCCSHHHHHHHHCCCCCCTTCCCGGGGHHHHHHHHHHHHCTTSCHH
T ss_pred ccccccCCccccccccccccccccCccccccCcccchhhhhhhhccccccccccccccccccchhhhhhHHHhhcccccc
Confidence 999988887887777665531
Q ss_pred ------CCcc-------------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcce------
Q 009859 347 ------PESS-------------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRAN------ 393 (523)
Q Consensus 347 ------p~~~-------------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~AD------ 393 (523)
|... ...++||++|++++||+. .++|++++|+|++|+|+|+|+++||
T Consensus 481 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~ik~l~~~g~Np~~s~p~~~~~~~aL~kldf~Vv~D~~~teTa~~AD~~~~~~ 560 (977)
T 1h0h_A 481 EAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDP 560 (977)
T ss_dssp HHHHHSCCBCTTCCCSHHHHHHHHHTTCCCEEEEESCCHHHHSBSHHHHHHHHTTCSEEEEEESSCCTTTTGGGSTTCCG
T ss_pred hhhccCCcccccCCccHHHHHHHhhcCCceEEEEeCcCccccCCCHHHHHHHHhcCCEEEEEecccChHHHhhhccCccc
Confidence 1000 013579999999999963 2468899999999999999999988
Q ss_pred -------EEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHh-------CC---------CCCCC-
Q 009859 394 -------VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA-------GM---------RLPYD- 449 (523)
Q Consensus 394 -------vvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~l-------g~---------~~~~~- 449 (523)
||||+++|+|++|+++|.++++|+.+|+|+|+||+|+||+|+.+||++| |. .++|.
T Consensus 561 AD~~~~~iVLPaa~~~E~~g~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rl~~~~~~~g~~~~~~~~~~~~~y~~ 640 (977)
T 1h0h_A 561 KKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWV 640 (977)
T ss_dssp GGCCCEEEEEEBCCGGGCCEEEECTTCEEEEECCSSCCCTTCBCHHHHHHHHHHHHHHHHHHSCTTCCHHHHHSCGGGGB
T ss_pred cccccceEEECCCCcccCCCccccCCCeEEeeccccCCccccccHHHHHHHHHHHHHHhhhccCCcccchhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999 31 13343
Q ss_pred ------CHHHHHHHHH
Q 009859 450 ------TIGGIRSRIR 459 (523)
Q Consensus 450 ------~~~~i~~~~~ 459 (523)
+.+++++++.
T Consensus 641 ~~~~~~~~e~~~~e~~ 656 (977)
T 1h0h_A 641 NDHGHFDPHKIAKLIN 656 (977)
T ss_dssp CTTSCBCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHhh
Confidence 7899999875
No 6
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=100.00 E-value=2.5e-66 Score=593.04 Aligned_cols=398 Identities=15% Similarity=0.174 Sum_probs=342.7
Q ss_pred ccccceeeeeeeccCCCCCcEEEEE-----ECC--EEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC-CC
Q 009859 61 RNWELKGTETIDVTDAVGSNIRIDS-----RGP--EVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-AD 131 (523)
Q Consensus 61 R~Wel~~~~siC~~C~~gC~i~v~v-----r~g--~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~-g~ 131 (523)
.+.+.+.++|+|++|++||++.|++ ++| +|+||+|++++|+|+|++|+||++.++.++ |+||++||+|. |+
T Consensus 39 ~~~~~~~~~t~C~~C~~gC~l~v~v~~~~~~~G~~~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~g~ 118 (1015)
T 1kqf_A 39 KLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGS 118 (1015)
T ss_dssp TTTTSEEEEEECSSBTTCCEEEEEEESCSCTTSCCEEEEEEECTTCTTTTTCCCHHHHTTHHHHTCTTBCCSCEEECTTC
T ss_pred CcCCceEEeeECCCCCCCCCEEEEEecccccCCceeEEEEEecCCCCCCCCccCHHHHHHHHHhcCcchhcCCEEeccCC
Confidence 3456789999999999999999999 689 999999999999999999999999999986 99999999996 57
Q ss_pred CCeeEcCHHHHHHHHHHHHHhcC----------------CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccch
Q 009859 132 GRFKAVNWRDALAVVAEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQS 195 (523)
Q Consensus 132 g~~~~isWdeAl~~ia~~L~~~~----------------~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~ 195 (523)
|+|++|||||||++||++|++++ .+++++++++..++|+.+++++|++.+|++|++++.+.|..
T Consensus 119 g~~~~iSWdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~ 198 (1015)
T 1kqf_A 119 DKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHG 198 (1015)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTH
T ss_pred CceeECCHHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCccccccc
Confidence 89999999999999999999874 25788888888889999999999999999999988777743
Q ss_pred h------hhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------c
Q 009859 196 N------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------L 263 (523)
Q Consensus 196 ~------~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~ 263 (523)
. ..+|.. ..+.++.|+++||+||+||+||.+++|+...+++++++++|+|||+||||++.|+..++ |
T Consensus 199 ~~~~~~~~~~G~~-~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~irP 277 (1015)
T 1kqf_A 199 PTVASLAPTFGRG-AMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRS 277 (1015)
T ss_dssp HHHHHHHHHHSCC-SCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECCCT
T ss_pred HHHHHHHHHhCCC-CCCCCHHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeeccCC
Confidence 3 234432 22347899999999999999999999999999999874599999999999999888764 4
Q ss_pred CCCHH---------------------------------------------------------------------------
Q 009859 264 GTGPK--------------------------------------------------------------------------- 268 (523)
Q Consensus 264 g~~~~--------------------------------------------------------------------------- 268 (523)
|+|.+
T Consensus 278 GTD~AL~lam~~~ii~~~l~D~~fv~~~t~~~~LV~~d~~f~~g~~~g~d~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~ 357 (1015)
T 1kqf_A 278 GTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDETLTHP 357 (1015)
T ss_dssp TCHHHHHHHHHHHHHHTTCSCHHHHHHHBSTTBBBCTTCCEETTEETTEETTTTEECCTTSSBCBCTTSSBCBCTTSCST
T ss_pred CchHHHHHHHHHHHHHcCCcCHHHHHhhcCcceeeccccccccccccccccccccccccchhhhhccCCccccccccccc
Confidence 55533
Q ss_pred -----------------HHHHHHcC-----cHHHHHHHhcC----CCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCC
Q 009859 269 -----------------TLLEIAEG-----RHPFFSAISNA----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 322 (523)
Q Consensus 269 -----------------~l~~~~~g-----i~~~a~~l~~a----~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~ 322 (523)
+++++ +| |+++|++|+++ ++++|++|+|+.+|.+|.+..+++.+|+.+||++|
T Consensus 358 ~tvf~~l~~~~~~ytpe~aa~i-tGvp~e~I~~lA~~~a~a~~~~~~~~i~~g~G~~~~~~G~~~~rai~~L~~ltGnig 436 (1015)
T 1kqf_A 358 RCVWNLLKEHVSRYTPDVVENI-CGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMG 436 (1015)
T ss_dssp TBHHHHHHHHHTTCCHHHHHHH-HCCCHHHHHHHHHHHHGGGSTTCCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCTT
T ss_pred chHHHHHHHHHhcCCHHHHHHH-HCcCHHHHHHHHHHHHhccCCCCcEEEEECccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 22233 25 68999999999 89999999999999999999999999999999999
Q ss_pred CCCCceeecchhhHHhhHHhcCCC--------------------------------------------------------
Q 009859 323 PDWNGLNVLLLNAAQAAALDLGLV-------------------------------------------------------- 346 (523)
Q Consensus 323 ~~g~g~~~l~~~~n~~g~~~~g~~-------------------------------------------------------- 346 (523)
++|+|++.++++.|.+|+.++|..
T Consensus 437 ~pGgg~~~~~g~~n~~g~~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 516 (1015)
T 1kqf_A 437 MAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDA 516 (1015)
T ss_dssp CTTCSEEECCCBTTHHHHHHTTCSTTEEGGGEECCBTTCCSHHHHHHHHSCCCSSSSCCCGGGGHHHHHHHHHHHHHGGG
T ss_pred CCCccccCCCCccCCCCccccccccccCccccCCCccccchhhhhhcccccccccccccccccccchhhhhhhhhhcccc
Confidence 999999998888888887766532
Q ss_pred ------------CCcc-----------ccccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcc---
Q 009859 347 ------------PESS-----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRA--- 392 (523)
Q Consensus 347 ------------p~~~-----------~~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~A--- 392 (523)
|... ...++||++|++|+||+. .++|++++|+|++|+|+|+|+++|
T Consensus 517 ~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~s~pd~~~~~~aL~kldf~Vv~D~~~teTa~~A~~~ 596 (1015)
T 1kqf_A 517 AQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFWQNH 596 (1015)
T ss_dssp CCGGGGGGGGGSCCBSSCCCHHHHHHHHHTTCCCEEEEESCCHHHHSSSHHHHHHHHTTCSEEEEEESBCCTTTTTTSCC
T ss_pred cccccccccccCCcccCCCCHHHHHHHhhCCCceEEEEeccChhccCCCHHHHHHHHhcCCeEEEEecccChHHHHhhcc
Confidence 1100 023579999999999963 246889999999999999999999
Q ss_pred ---------e-----EEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHh-------C--------
Q 009859 393 ---------N-----VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA-------G-------- 443 (523)
Q Consensus 393 ---------D-----vvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~l-------g-------- 443 (523)
| ||||+++|+|++|+++|.++++|+++++|+|+||+|+||+|+++||++| |
T Consensus 597 ~d~~d~~~aD~~~~~vVLPaa~~~Ek~g~~~n~~~~v~~~~~~v~P~gear~d~~I~~~La~rl~~~~~~~g~~~~~~~~ 676 (1015)
T 1kqf_A 597 GESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLM 676 (1015)
T ss_dssp GGGGCCCGGGCCCEEEEEEBCCGGGSCEEEECTTCEEEEECCCSCCSTTCBCHHHHHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred cccccccchhcccceEEecCCchhccCCceecCCceEEEeccccCCcccccCHHHHHHHHHHHHHHHHhhcCCccccccc
Confidence 5 9999999999999999999999999999999999999999999999999 6
Q ss_pred -CCCCCC-----CHHHHHHHHHH
Q 009859 444 -MRLPYD-----TIGGIRSRIRT 460 (523)
Q Consensus 444 -~~~~~~-----~~~~i~~~~~~ 460 (523)
..++|. +.+++++++..
T Consensus 677 ~~~~~y~~~~~~~~e~i~~e~~~ 699 (1015)
T 1kqf_A 677 KMSWNYKQPHEPQSDEVAKENNG 699 (1015)
T ss_dssp HSCCCCSSTTSCCHHHHHHHHHC
T ss_pred cccccccccCCCCHHHHHHHHhc
Confidence 345565 78899998853
No 7
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=100.00 E-value=9.7e-67 Score=580.62 Aligned_cols=391 Identities=15% Similarity=0.168 Sum_probs=325.8
Q ss_pred eeeeeeccCCCCCcEEEEEE-CCEEEEEecCCCCCCC-ccccccccccccCCCC-CCCCCCcEEeCC----CCCeeEcCH
Q 009859 67 GTETIDVTDAVGSNIRIDSR-GPEVMRILPRLNEDIN-EEWISDKTRFCYDGLK-SQRLNDPMIRGA----DGRFKAVNW 139 (523)
Q Consensus 67 ~~~siC~~C~~gC~i~v~vr-~g~v~rv~~~~~~~~n-~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g----~g~~~~isW 139 (523)
+++|+|++|++||++.|+++ +|+|+||+|++++|+| +|++|+||+++++.++ |+||++||+|++ +|+|++|||
T Consensus 1 ~~~t~C~~C~~gC~i~v~v~~~g~v~rv~g~~~~p~n~~g~lC~kG~~~~~~~~~p~Rl~~Pl~R~g~~rG~g~~~~isW 80 (727)
T 2e7z_A 1 KKHVVCQSCDINCVVEAEVKADGKIQTKSISEPHPTTPPNSICMKSVNADTIRTHKDRVLYPLKNVGSKRGEQRWERISW 80 (727)
T ss_dssp CEEEECCSSTTCCEEEEEECTTSCEEEEECSSCCSSSCTTCCCHHHHTHHHHHTCTTCCCSCEEECSSSTTCCCEEECCH
T ss_pred CCceECCCCcCCCCEEEEEEECCEEEEEEcCCCCCCCCCCCcChhHHhHHHHhhCcccccCchhhcCCCCCCCCeEEecH
Confidence 36899999999999999999 9999999999999999 9999999999999987 999999999973 489999999
Q ss_pred HHHHHHHHHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCC-Ccccccc
Q 009859 140 RDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT-SISGLEK 214 (523)
Q Consensus 140 deAl~~ia~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~di~~ 214 (523)
||||++||++|++++ +++|+++.|+..+.|+.+++++|++.+|++|++.+.+.|......+....+|. ...|+++
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~~~~~d~~~ 160 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGSYSFASFAD 160 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSSCEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHHHHHHHHcCCCCccCCcccchhHHHHHHHHhcCCCCCCCccc
Confidence 999999999999875 47899888765555555777999999999999887666643322222222332 3569999
Q ss_pred CCEEEEEcCCCCcchh-hHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHH-----------------
Q 009859 215 ADCFLLVGTQPRVEAA-MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL----------------- 270 (523)
Q Consensus 215 ad~il~~G~n~~~~~p-~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l----------------- 270 (523)
||+||+||+||.+++| .+..+++++++ +|+|||+|||+.+.|+..++ ||+|.+.+
T Consensus 161 ad~il~~G~n~~~~~p~~~~~~l~~a~~-~G~klividPr~t~ta~~Ad~~l~irPGtD~al~~a~~~~ii~~~l~d~~f 239 (727)
T 2e7z_A 161 SNCLLFIGKNLSNHNWVSQFNDLKAALK-RGCKLIVLDPRRTKVAEMADIWLPLRYGTDAALFLGMINVIINEQLYDKEF 239 (727)
T ss_dssp CSEEEEESCCCBTTBSHHHHHHHHHHHH-HTCEEEEECSSCCHHHHHCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CCEEEEECCChhhcCCHHHHHHHHHHHH-CCCeEEEECCCCCcchhhcceeecCCCCcHHHHHHHHHHHHHHCCcccHHH
Confidence 9999999999999999 89999999865 89999999999999988865 57775432
Q ss_pred -----------------------HHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCC
Q 009859 271 -----------------------LEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 322 (523)
Q Consensus 271 -----------------------~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~ 322 (523)
+++ +| |+++|++|+++++++|++|+|+++|.+|.+..+++.+|+.++|++
T Consensus 240 v~~~t~gf~~l~~~v~~~tpe~~a~i-tGv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i- 317 (727)
T 2e7z_A 240 VENWCVGFEELKERVQEYPLDKVAEI-TGCDAGEIRKAAVMFATESPASIPWAVSTDMQKNSCSAIRAQCILRAIVGSF- 317 (727)
T ss_dssp HHHHEECHHHHHHHHTTCCHHHHHHH-HCCCHHHHHHHHHHHHHSSSEECCCCSGGGSSTTHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHhHHHHHHHHHHhcCCHHHHHHH-HCcCHHHHHHHHHHHHhCCCeEEEeCchhhhhccHHHHHHHHHHHHHHhCCc-
Confidence 222 24 688999999999999999999999999999999999999999999
Q ss_pred CCCCceeecchh-----------hHHhh---HHhcC--CCCC-----------------------------cc------c
Q 009859 323 PDWNGLNVLLLN-----------AAQAA---ALDLG--LVPE-----------------------------SS------N 351 (523)
Q Consensus 323 ~~g~g~~~l~~~-----------~n~~g---~~~~g--~~p~-----------------------------~~------~ 351 (523)
++|+|++.+.+. .+..| ...+| ..|. .. .
T Consensus 318 ~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~~~~~~~~~~l~~~ 397 (727)
T 2e7z_A 318 VNGAEILGAPHSDLVPISKIQMHEALPEEKKKLQLGTETYPFLTYTGMSALEEPSERVYGVKYFHNMGAFMANPTALFTA 397 (727)
T ss_dssp TSSSEEECBSCTTSCCHHHHTTGGGSCHHHHHHCTTTTTCGGGSHHHHGGGHHHHHHHHSCSSCCCSSCSCCCHHHHHHH
T ss_pred ccCCccccCCCccccccccccchhhcCccccccccCccccCcccccccchhhhhhhhhcccccccccccccccHHHHHHH
Confidence 999888765421 11111 00011 1111 10 0
Q ss_pred ----cccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCc--eEe
Q 009859 352 ----SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGC--TQQ 417 (523)
Q Consensus 352 ----~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~--~q~ 417 (523)
.+++||++|++|+||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|+++|.+++ +|.
T Consensus 398 ~~~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~l~~~V~~d~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~v~~ 477 (727)
T 2e7z_A 398 MATEKPYPVKAFFALASNALMGYANQQNALKGLMNQDLVVCYDQFMTPTAQLADYVLPGDHWLERPVVQPNWEGIPFGNT 477 (727)
T ss_dssp HHHCCSSCCCEEEEESCCGGGSSSCHHHHHHHHHTCSEEEEEESSCCTTGGGCSEEEEBCCGGGCCBCSCSSTBCSEEEC
T ss_pred HHcCCCcceEEEEEeCCChhhcCCCHHHHHHHHhCCCCEEEeecccCccHhhCcEEeCCCCccccccccccCCCccceEE
Confidence 23359999999999964 1467889999999999999999999999999999999999999875 999
Q ss_pred ecCccCCCCCCccHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHH
Q 009859 418 TLPAVPTVGDARDDWKIIRALSEVAGMR--LPYDTIGGIRSRIRT 460 (523)
Q Consensus 418 ~~~~v~p~ge~r~d~~Il~~La~~lg~~--~~~~~~~~i~~~~~~ 460 (523)
++|+|+|+||+|+||+|+++||++||.+ ++|.+.+++++++.+
T Consensus 478 ~~~~v~P~gear~d~~I~~~La~~lg~~~~~~~~~~~~~~~~~~~ 522 (727)
T 2e7z_A 478 SQQVVEPAGEAKDEYYFIRELAVRMGLEEHFPWKDRLELINYRIS 522 (727)
T ss_dssp BCCCSCCSTTCBCHHHHHHHHHHHTTCGGGCCCCSHHHHHHHHTG
T ss_pred EccccCCCCCCcCHHHHHHHHHHHhCCCccCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999987 788999999998854
No 8
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=100.00 E-value=8.4e-65 Score=567.40 Aligned_cols=385 Identities=17% Similarity=0.150 Sum_probs=319.3
Q ss_pred ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeCC-----CCCeeEcC
Q 009859 65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-----DGRFKAVN 138 (523)
Q Consensus 65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~g-----~g~~~~is 138 (523)
.+.++|+|++|+.||++.|+++||+|+||+|++++|+|+|++|+||+++++.+| |+||++||+|.| +|+|++||
T Consensus 37 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~~p~n~g~lC~kg~~~~~~~~~p~Rl~~Pl~R~g~~~rG~g~~~~is 116 (765)
T 2vpz_A 37 VKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVAT 116 (765)
T ss_dssp CEEEEEECCSSTTCCEEEEEESSSCEEEEEECSSSTTTTTCCCHHHHHGGGGGGCTTSCCSCEEECTTCCSSSCCEEECC
T ss_pred cEEEEeECCCCcCCCceEEEEECCEEEEEEcCCCCCCCCCccCcchhhhHHhhcCCCcccCCceeCCCCCCCCCceEEee
Confidence 478999999999999999999999999999999999999999999999999997 899999999973 48999999
Q ss_pred HHHHHHHHHHHHHhcC----CCCEEEEeCCCCcHHHHHHHHHHH-HHcCCCccccCC-Cccchh------hhhhcCcccC
Q 009859 139 WRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFL-NRMGSNNVWCEG-TGAQSN------ADLRSGYIMN 206 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~----~~~i~~~~g~~~~~e~~~~~~~l~-~~lG~~~~~~~~-~~~~~~------~~~~~~~~~~ 206 (523)
|||||++||++|++++ +++|+++.+ .+.| +++++|+ +.+|++|++.+. +.|... ..+|.. .+
T Consensus 117 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~--~~~e--~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~--~~ 190 (765)
T 2vpz_A 117 WEEALDHIAKKMLEIREKYGPEAIAFFGH--GTGD--YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRP--IG 190 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGCEEEEC--STTH--HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSC--CC
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEEcC--CCcH--HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCC--CC
Confidence 9999999999999875 367888877 3445 7788999 899999998876 555432 223331 12
Q ss_pred -CCccccccCCEEEEEcCCCCcchh-hHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHH---------
Q 009859 207 -TSISGLEKADCFLLVGTQPRVEAA-MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT--------- 269 (523)
Q Consensus 207 -~~~~di~~ad~il~~G~n~~~~~p-~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~--------- 269 (523)
.++.|+++||+||+||+||.+++| .+..+++++++ +|+|||+|||+.+.|+..++ ||+|.+.
T Consensus 191 ~~~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~-~G~klividPr~t~ta~~Ad~~l~irPGtD~al~~al~~~ii 269 (765)
T 2vpz_A 191 GHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALALK-NGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVLI 269 (765)
T ss_dssp SSCCCCGGGCSEEEEESCCBTTBCCHHHHHHHHHHHH-TTCEEEEECSBCCTTGGGCSEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCccccccCCEEEEEeCChhhcCChHHHHHHHHHHH-CCCEEEEECCCCCcchhhCCeEeCCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999999 88999999865 89999999999999998875 6776543
Q ss_pred -------------------------------HHHHHcC-----cHHHHHHHh-cCCCcEEEEcCCcccccCHHHHHHHHH
Q 009859 270 -------------------------------LLEIAEG-----RHPFFSAIS-NAKNPVIIVGAGLFERKDKDAIFSTVE 312 (523)
Q Consensus 270 -------------------------------l~~~~~g-----i~~~a~~l~-~a~~~~ii~g~~~~~~~~~~~~~~~~~ 312 (523)
++++ +| |+++|++|+ ++++++|++|+|+++|.+|.+..+++.
T Consensus 270 ~~~l~D~~fi~~~t~gf~~l~~~v~~~tpe~~a~i-tGv~~~~I~~lA~~~a~~a~~~~i~~g~g~~~~~~g~~~~~a~~ 348 (765)
T 2vpz_A 270 YEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKH-TEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALL 348 (765)
T ss_dssp HTTCSCHHHHHHHEECCHHHHHHTSSCCHHHHHHH-HCSCHHHHHHHHHHHHTTTTSEECCCCSCCCSSTTTHHHHHHHH
T ss_pred HcCCcCHHHHHHHccHHHHHHHHhhcCCHHHHHHH-HCcCHHHHHHHHHHHHhhCCCEEEEcccccccccchHHHHHHHH
Confidence 2222 24 688999999 889999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCceeecchhhHHhhHHh------------cC----------CCC-----------Ccc--c------
Q 009859 313 AIAKKGNVIRPDWNGLNVLLLNAAQAAALD------------LG----------LVP-----------ESS--N------ 351 (523)
Q Consensus 313 ~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~------------~g----------~~p-----------~~~--~------ 351 (523)
+|+.++|++|++|+.+. ...|.+|..+ ++ ..| ... .
T Consensus 349 ~L~~l~G~ig~~Gg~~~---~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~l~~~~~ 425 (765)
T 2vpz_A 349 YVNVLLGNYGRPGGFYI---AQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMI 425 (765)
T ss_dssp HHHHHHTCBTSTTTBCC---CBCCCCCCCCCCCCSSCCCCCCSSSCSSTTTTTSSSCCCTTTTSSSSCSCCTTTTTSHHH
T ss_pred HHHHHhCCCCCCCCccc---CCCCCcccCChhhcCCCCcccccccccccccccccCCcccccccccCCcccHHHHHHHHH
Confidence 99999999999875321 1122222000 00 112 000 0
Q ss_pred --cccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCcee--ec-CCCceEee
Q 009859 352 --SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTY--EN-TEGCTQQT 418 (523)
Q Consensus 352 --~~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~--~n-~eg~~q~~ 418 (523)
.+++||++|++|+||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|++ .+ .++++|.+
T Consensus 426 ~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~ld~~V~~d~~~teTa~~ADvvLP~a~~~E~~g~~~~~~~~~~~v~~~ 505 (765)
T 2vpz_A 426 TGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLR 505 (765)
T ss_dssp HCCSSCCCCEEEESCCHHHHSSCHHHHHHHHHTCSCEEEEESSCCTTTTTCSSEEEBCCTTSCCCCCEEECBSSCEEECC
T ss_pred cCCCCCceEEEEcCCCccccCCCHHHHHHHHhcCCeEEEEecCCCchHHhcCEeecCCcccccccccccCCCCCceEEEe
Confidence 22369999999999963 2467889999999999999999999999999999999996 33 47799999
Q ss_pred cCccCCCCCCccHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHH
Q 009859 419 LPAVPTVGDARDDWKIIRALSEVAGMR--LPYDTIGGIRSRIRT 460 (523)
Q Consensus 419 ~~~v~p~ge~r~d~~Il~~La~~lg~~--~~~~~~~~i~~~~~~ 460 (523)
+|+|+|+||+|+||+|+.+||++||.+ ++|.+.+++++++.+
T Consensus 506 ~~~v~P~ge~r~d~~I~~~La~~lg~~~~~~~~~~~e~~~~~~~ 549 (765)
T 2vpz_A 506 TPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQ 549 (765)
T ss_dssp CCSSCCCTTCBCHHHHHHHHHHHTTCTTSSCSSSHHHHHHHHHH
T ss_pred ecccCCCCCCcCHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHh
Confidence 999999999999999999999999987 678899999988754
No 9
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=100.00 E-value=1.7e-64 Score=568.97 Aligned_cols=397 Identities=14% Similarity=0.103 Sum_probs=323.8
Q ss_pred ccccccccceeeeeeeccCCCCCcEEEEE-----------------------------------------ECCEEE--EE
Q 009859 57 AFKARNWELKGTETIDVTDAVGSNIRIDS-----------------------------------------RGPEVM--RI 93 (523)
Q Consensus 57 ~~~aR~Wel~~~~siC~~C~~gC~i~v~v-----------------------------------------r~g~v~--rv 93 (523)
+++.|||+++.++|+|++|++||++.|++ ++|+|+ ||
T Consensus 6 ~~~~~~~~~~~~~t~C~~C~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~v~i 85 (825)
T 1g8k_A 6 RITLPPANAQRTNMTCHFCIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMV 85 (825)
T ss_dssp BCCCCBTTCEEEEEECSSBTTCCEEEEEEEETTCCCCSSGGGBTTCCCTTSCCCTTSCCCCGGGEEEEECTTSCEEEEEE
T ss_pred ccccCCCCceEEeeeCCCccCCcCEEEEEccccccccccccccccccccccccccccccccccccccccccCCeEEEEEE
Confidence 56799999999999999999999999998 999998 99
Q ss_pred ecCCCCCCCccccccccccccCCCC-C-----CCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcC----CCCEEEE--
Q 009859 94 LPRLNEDINEEWISDKTRFCYDGLK-S-----QRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGI-- 161 (523)
Q Consensus 94 ~~~~~~~~n~~~lC~kGr~~~~~~~-~-----~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~----~~~i~~~-- 161 (523)
+|++++|+|+|++|+||+++++.+| | +||++||+|+ +|+|++|||||||++||++|++++ +++|+++
T Consensus 86 ~g~~~~p~n~G~lC~KG~~~~~~~y~p~~~~~dRL~~Pl~R~-~g~~~~iSWdeAl~~ia~~l~~i~~~~G~~~i~~~~~ 164 (825)
T 1g8k_A 86 VPDKACVVNSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYA-ADEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSCF 164 (825)
T ss_dssp EECTTCTTTTTCCCTTGGGGGGGSCCSSSTTTTCCCSCEEEC-SSSEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEEC
T ss_pred ecCCCCCCCCCccCcchhhHHHHhccccCCccccccCCeEec-CCceEEccHHHHHHHHHHHHHHHHHhhCCceEEEEec
Confidence 9999999999999999999999986 5 8999999999 689999999999999999999875 3688887
Q ss_pred --eCCCCcHHHHHHHHHHH-HHcCCCccccCCC-----ccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHH
Q 009859 162 --AGRLSDAESMMALKDFL-NRMGSNNVWCEGT-----GAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVN 233 (523)
Q Consensus 162 --~g~~~~~e~~~~~~~l~-~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~ 233 (523)
+|+..++|+.+++++|+ ..+|++|++++.+ .|.....++.. ..+.++.|+++||+||+||+||.+++|++.
T Consensus 165 ~~~s~~~~~e~~~~~~k~~~~~lGt~n~~~~~r~~~~~~c~~~~~~G~~-~~~~~~~D~~~ad~il~~G~Np~~~~p~~~ 243 (825)
T 1g8k_A 165 DHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGIG-ELNNAYEDAQLADVIWSIGNNPYESQTNYF 243 (825)
T ss_dssp CCSSTTCSHHHHHHHHHHHHTTTCCCCEEETTBSSSCCTTHHHHHTTCC-SCCSCHHHHHHCSEEEEESCCHHHHSHHHH
T ss_pred ccccCCcccHHHHHHHHHHHHhcCCceecccccccccceeeccccccCC-CCCCCHHHHHhCCEEEEeCCChHHhCcchH
Confidence 45667889888888776 4899999987653 34434445532 234578999999999999999999999765
Q ss_pred H-HHHH--------HHH-------hCCCeEEEEcCCCCCCcchh----------c----cCCCHHHH-------------
Q 009859 234 A-RIRK--------TVR-------ANNAKVGYIGPATDLNYDHQ----------H----LGTGPKTL------------- 270 (523)
Q Consensus 234 ~-~lr~--------a~~-------~~g~klv~idp~~~~t~~~a----------~----~g~~~~~l------------- 270 (523)
. ++++ +++ ++|+|||+|||+.+.|+..+ + ||+|.+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~ta~~Ad~~~~~~a~~~l~irPGtD~al~~al~~~ii~~~l~ 323 (825)
T 1g8k_A 244 LNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQGWI 323 (825)
T ss_dssp HHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCS
T ss_pred hhhHHHhhhhhHHHHhhhhccccccCCCEEEEEeCCCCchhhhhhhccccccceEeccCCCcHHHHHHHHHHHHHHcCCc
Confidence 3 2222 111 25999999999999987654 2 47775432
Q ss_pred --------------------------HHHHcC-----cHHHHHHHhcCC------CcEEEEcCCcccccCHHHHHHHHHH
Q 009859 271 --------------------------LEIAEG-----RHPFFSAISNAK------NPVIIVGAGLFERKDKDAIFSTVEA 313 (523)
Q Consensus 271 --------------------------~~~~~g-----i~~~a~~l~~a~------~~~ii~g~~~~~~~~~~~~~~~~~~ 313 (523)
+++ +| |+++|+.|++++ +++|++|+|+.++.++....+++.+
T Consensus 324 D~~Fv~~~t~Gfd~~~~~~~~tpe~~a~i-tGv~~~~I~~~A~~~a~a~~~~~~~~~~i~~g~g~~~~~~g~~~~~ai~~ 402 (825)
T 1g8k_A 324 DKPFIEAHTKGFDDAVKTNRLSLDECSNI-TGVPVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLD 402 (825)
T ss_dssp CHHHHHHHEECHHHHHHHTCCCHHHHHHH-HCCCHHHHHHHHHHHHSCCTTSCCCCEEEEECHHHHTSTTHHHHHHHHHH
T ss_pred CHHHHHHhcCCHHHHHhhccCCHHHHHHH-HCcCHHHHHHHHHHHHhcccccCCCceEEEEccchhhhhcCHHHHHHHHH
Confidence 222 24 688999999874 7889999999999999999999999
Q ss_pred HHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCcc-------ccccCccEEEEEcCCCCC--C------CCCCC----
Q 009859 314 IAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS-------NSIESAKFVYLMGADDVD--L------EKLPN---- 374 (523)
Q Consensus 314 L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~-------~~~~~i~~l~~~g~n~~~--~------~~l~~---- 374 (523)
|+.++|++|++|+|++.+.+..+ |... ...|... ...+++|++|+++.||+. + ++|++
T Consensus 403 L~~l~Gnig~~Ggg~~~~~~~~~--g~~~-~~~~g~~~~~~~~~~~~g~~k~l~~~g~Np~~~~p~~~~~~~al~~~~~~ 479 (825)
T 1g8k_A 403 LVIATHNVGRRGTGCVRMGGHQE--GYTR-PPYPGDKKIYIDQELIKGKGRIMTWWGCNNFQTSNNAQALREAILQRSAI 479 (825)
T ss_dssp HHHHTTCSSSTTCCEEECCSBCB--CCEE-CCCSCSSCCCHHHHHHTTCCSEEEEESCCHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCcCCCCcCCC--CCCC-CCCCCcchhhhhhHhhCCCceEEEEEecCcccCCcCHHHHHHHHHccchh
Confidence 99999999999999887654321 1110 0112111 135789999999999953 1 22332
Q ss_pred ---------------------------CceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCC
Q 009859 375 ---------------------------DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGD 427 (523)
Q Consensus 375 ---------------------------~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge 427 (523)
.+|+|++|+|+|+|+++||||||+++|+|++|+++|.++++|.++|+|+|+||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~fvVv~d~~~teTa~~ADvVLPaa~~~E~~g~~~~~~~~v~~~~~~v~P~ge 559 (825)
T 1g8k_A 480 VKQAMQKARGATTEEMVDVIYEATQNGGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGT 559 (825)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHTTTCCEEEEEESSCCGGGGTCSEEEEBCCBTTBCEEEECTTCEEEEECCCSCCSTT
T ss_pred hhhhhhcccCcchhHHHHHHHHHhccCCCEEEEEecccCchHhhCeEEeCCCCCCcCCceEecCcceEEEeecccCCccc
Confidence 37999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhC-------C--------CCCCCCHHHHHHHHH
Q 009859 428 ARDDWKIIRALSEVAG-------M--------RLPYDTIGGIRSRIR 459 (523)
Q Consensus 428 ~r~d~~Il~~La~~lg-------~--------~~~~~~~~~i~~~~~ 459 (523)
+|+||+|+++||++|| . .++|.+.+++++++.
T Consensus 560 ar~d~~Il~~La~~lg~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~~ 606 (825)
T 1g8k_A 560 AMADCLIAARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGF 606 (825)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTCHHHHHHTCSCCCSSHHHHHHHTG
T ss_pred cCCHHHHHHHHHHHHhhhhhccccchhhhccccCCCCCHHHHHHHHH
Confidence 9999999999999995 2 267888999887754
No 10
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=100.00 E-value=6.5e-63 Score=551.71 Aligned_cols=409 Identities=17% Similarity=0.110 Sum_probs=324.6
Q ss_pred cccccceeeeeeeccCCCCCcEEEEE-----------------------------------------ECCEEEE--EecC
Q 009859 60 ARNWELKGTETIDVTDAVGSNIRIDS-----------------------------------------RGPEVMR--ILPR 96 (523)
Q Consensus 60 aR~Wel~~~~siC~~C~~gC~i~v~v-----------------------------------------r~g~v~r--v~~~ 96 (523)
-.|++.+++.++|.+|.+||+..|++ +||++++ |+|+
T Consensus 12 ~~~~~~~~~~~~c~~c~~gcg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dG~~v~v~i~gd 91 (845)
T 4aay_A 12 IIPADAKKHNVTCHFCIVGCGYHAYTWPINKQGGTDPQNNIFGVDLSEQQQAESDAWYSPSMYNVVKQDGRDVHVVIKPD 91 (845)
T ss_dssp CCCTTCEEEEEECSSBTTCCEEEEEEEETTCCCCSSGGGSTTCSCTTSCCCTTCSSCCCGGGEEEEEETTEEEEEEEEEC
T ss_pred CCCCCceeeccccceeeecccceeeecCCCccCCCCccccccCCCccccCCccchhcccccEEEEEeECCEEEEEEEeCC
Confidence 57999999999999999999999988 8999999 8999
Q ss_pred CCCCCCccccccccccccCCCC-C------CCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcC----CCCEEEEe---
Q 009859 97 LNEDINEEWISDKTRFCYDGLK-S------QRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIA--- 162 (523)
Q Consensus 97 ~~~~~n~~~lC~kGr~~~~~~~-~------~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~----~~~i~~~~--- 162 (523)
+++|+|+|++|.||++..+.+| | +||++||+|+ +|+|++|||||||++||++|++++ +++++++.
T Consensus 92 ~~~p~n~G~lC~KG~~~~~~~y~p~~~~~~dRL~~Pl~R~-~g~~~~iSWdeAld~iA~kl~~i~~~~Gp~sv~~~~~~~ 170 (845)
T 4aay_A 92 HECVVNSGLGSVRGARMAETSFSEARNTQQQRLTDPLVWR-YGQMQPTSWDDALDLVARVTAKIVKEKGEDALIVSAFDH 170 (845)
T ss_dssp TTCTTTTTCCCTTGGGTTTTSCBTTTTBCTTSCCSCEEEE-TTEEEECCHHHHHHHHHHHHHHHHHHHCGGGEEEEECCC
T ss_pred CCCCCCCCeeChhhHhHHHhhcCccccCccCcccCCeEec-CCCEeEeCHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 9999999999999999998886 7 9999999999 799999999999999999999875 37888873
Q ss_pred -CCCCcHHHHHHHHHHHH-HcCCCccccCCCc-----cchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHH-
Q 009859 163 -GRLSDAESMMALKDFLN-RMGSNNVWCEGTG-----AQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNA- 234 (523)
Q Consensus 163 -g~~~~~e~~~~~~~l~~-~lG~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~- 234 (523)
|+..++|+.|++++|+. .+|++|++++.+. |.....+|... .+.+++|+++||+||+||+||.+++|.+..
T Consensus 171 g~~~~~~e~~y~~~k~~~~~lGt~ni~~~~r~~~ss~c~~~~~~G~~~-~~~~~~D~~~ad~il~~G~Np~~~~p~~~~~ 249 (845)
T 4aay_A 171 GGAGGGYENTWGTGKLYFEAMKVKNIRIHNRPAYNSEVHGTRDMGVGE-LNNCYEDAELADTIVAVGTNALETQTNYFLN 249 (845)
T ss_dssp CSTTCCHHHHHHHHHHHHTTCCCCSEEESSSSSSCCSCHHHHHTTCCS-CCSCTHHHHHCSEEEEESCCHHHHSHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCeeeccCcCccchHHHHHHHHcCCC-CCCChhHHhhCCEEEEEeCChhHhCcchHHH
Confidence 44567899898888875 7999999887653 33334455432 235789999999999999999999986531
Q ss_pred ----HHH----HHHH-------hCCCeEEEEcCCCCCCcchh----------c----cCCCHHHH---------------
Q 009859 235 ----RIR----KTVR-------ANNAKVGYIGPATDLNYDHQ----------H----LGTGPKTL--------------- 270 (523)
Q Consensus 235 ----~lr----~a~~-------~~g~klv~idp~~~~t~~~a----------~----~g~~~~~l--------------- 270 (523)
.++ ++++ ++|+||||||||++.|+..+ | ||+|.+.+
T Consensus 250 h~~~~~~~~~~~~~k~~~~~~~~~GaklIvIDPr~t~ta~~Ad~~~~~~~~~~l~irPGTD~AL~~a~~~~ii~egl~D~ 329 (845)
T 4aay_A 250 HWIPNLRGESLGKKKELMPEEPHEAGRIIIVDPRRTVTVNACEQTAGADNVLHLAINSGTDLALFNALFTYIADKGWVDR 329 (845)
T ss_dssp THHHHHHTTTHHHHHHHSCSSCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHHHhhhccccccCCCEEEEEeCCCCHHHHHHHhhcccccceEEeecCCcHHHHHHHHHHHHHHcCCccH
Confidence 121 1222 26999999999999987643 2 46654321
Q ss_pred ---HHHH--------------------------------------------cC-----cHHHHHHHhcCC------CcEE
Q 009859 271 ---LEIA--------------------------------------------EG-----RHPFFSAISNAK------NPVI 292 (523)
Q Consensus 271 ---~~~~--------------------------------------------~g-----i~~~a~~l~~a~------~~~i 292 (523)
++.+ +| |+++|++|++++ ++++
T Consensus 330 ~Fi~~~t~~~~~~~p~~~~~~~~~~~~~~~~~gfe~~~~~~~~tpe~aa~itGv~~~~I~~~A~~~a~~~~~~~~~~~~~ 409 (845)
T 4aay_A 330 DFIDKSTLREGTARPPLYPARGVSEANPGHLSSFEDAVEGCRMSIEEAAEITGLDAAQIIKAAEWIGMPKEGGKRRRVMF 409 (845)
T ss_dssp HHHHHHBCCCCCCCCTTTTTSCSBTTBCSEEECHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCTTSCCCCEEE
T ss_pred HHHHHHhcccccccccccccccccccccccccCHHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHHhhccccccccceEE
Confidence 1111 23 688999999877 4588
Q ss_pred EEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhc-CCCCCcc-------ccccCccEEEEEcC
Q 009859 293 IVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL-GLVPESS-------NSIESAKFVYLMGA 364 (523)
Q Consensus 293 i~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~-g~~p~~~-------~~~~~i~~l~~~g~ 364 (523)
++|+|+.++.+|....+++.+|+.+||++|++|+|++.+.+..+ |.... ...|+.. ...+++|++|+++.
T Consensus 410 ~~~~Gi~~~~~g~~~~~ai~~L~lltGniG~pGgg~~~~~g~~~--g~~~p~~~~pg~~~~~~~~~~~~g~~k~~~v~g~ 487 (845)
T 4aay_A 410 GYEKGLIWGNDNYRTNGALVNLALATGNIGRPGGGVVRLGGHQE--GYVRPSDAHVGRPAAYVDQLLIGGQGGVHHIWGC 487 (845)
T ss_dssp EECHHHHTSTTHHHHHHHHHHHHHHTTCSSSTTCCEEECCSBCB--CCCCSCCGGGCSSCCCHHHHHHTTCCSEEEEESC
T ss_pred EecchhhcccChHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCC--CCcCccccCCCcchhhhhhhhhcCcceEEEEecc
Confidence 99999999999999999999999999999999999887654322 10000 0011111 13578999999999
Q ss_pred CCCC--CC------C------------------------------CCC-CceEEEEcccCCcccCcceEEecCCCCCCCC
Q 009859 365 DDVD--LE------K------------------------------LPN-DAFVVYQGHHGDHGVYRANVILPASAFSEKE 405 (523)
Q Consensus 365 n~~~--~~------~------------------------------l~~-~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~ 405 (523)
||+. ++ + |++ ++|+|++|+|+|+|+++||||||+++|+|++
T Consensus 488 Np~~s~p~~~~~~~al~~~~~~v~~~l~~~~~~~~~~~~~~v~~aL~~~~dfvVv~D~f~TeTA~~ADvVLPaa~~~Ek~ 567 (845)
T 4aay_A 488 DHYKTTLNAHEFKRVYKKRTDMVKDAMSAAPYGDREAMVNAIVDAINQGGLFAVNVDIIPTKIGEACHVILPAATSGEMN 567 (845)
T ss_dssp CHHHHSTTHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHHHTTCCEEEEEESSCCSGGGGCSEEEEEECBTTBC
T ss_pred CccccCcCHHHHHHHHhhcchhHHHHHhhccccchhhHHHHHHHHhccCCCeEEEEecccChhHhhccEEcccCcccccC
Confidence 9863 10 1 111 4799999999999999999999999999999
Q ss_pred ceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCC---------------CCCCCCHHHHHHH-HHHhCCCC--CC
Q 009859 406 GTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM---------------RLPYDTIGGIRSR-IRTVAPNL--LH 467 (523)
Q Consensus 406 gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~---------------~~~~~~~~~i~~~-~~~~~p~~--~~ 467 (523)
|+++|.++++|+.+|+|+|+||+|+||+|+.+||++||. .++|.+.++++.+ +....|.. .+
T Consensus 568 gt~~n~~r~v~~~~~~i~p~gear~d~~i~~~lA~rLg~~~~~~G~~~~~~~f~~f~~~~~ee~~~e~~~~~~~~~~g~t 647 (845)
T 4aay_A 568 LTSMNGERRMRLTERYMDPPGQSMPDCLIAARLANTMERVLTEMGDVGYAAQFKGFDWQTEEDAFMDGYNKNAHGGEFVT 647 (845)
T ss_dssp EEEECTTCEEEEECCCSCCSTTCEEHHHHHHHHHHHHHHHHHHHTCHHHHHTTCSCCCSSHHHHHHHTHHHHSTTGGGCC
T ss_pred ceEecCCceEEEeecccCCCccCCcHHHHHHHHHHHhcchhccccccchhhcccCCCCCCHHHHHHHHHHHhCCCcCCCC
Confidence 999999999999999999999999999999999999951 3678899988876 44444433 35
Q ss_pred ccccC
Q 009859 468 VDERE 472 (523)
Q Consensus 468 ~~~~~ 472 (523)
|+.+.
T Consensus 648 ~e~L~ 652 (845)
T 4aay_A 648 YERLS 652 (845)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 11
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=100.00 E-value=3.5e-61 Score=549.03 Aligned_cols=375 Identities=12% Similarity=0.059 Sum_probs=311.7
Q ss_pred eeeeeee-ccCC--CCCcEEEEEECCEEEEEecC-------CCCCCCccccccccccccCCCC-CCCCCCcEEeC---CC
Q 009859 66 KGTETID-VTDA--VGSNIRIDSRGPEVMRILPR-------LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---AD 131 (523)
Q Consensus 66 ~~~~siC-~~C~--~gC~i~v~vr~g~v~rv~~~-------~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~---g~ 131 (523)
+.+.|+| ++|+ +||++.|+|+||+|+||+|+ +++|+|++++|.||++.++.+| |+||++||+|+ |+
T Consensus 76 ~~~~stc~~~C~~~~~C~i~v~v~dG~v~~v~g~~~~p~~~p~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~ 155 (976)
T 2ivf_A 76 KVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKRVGKRGE 155 (976)
T ss_dssp EEEEECCCSCCSSCCCCCEEEEEETTEEEEEEECCCCCCSSTTSCCCCSCCCTTGGGTHHHHTSTTBCCSCEEECSSTTS
T ss_pred EEEEeeeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCCCCCCCCCcChhhhhHHHHhcCcccccCCeeeccCCCC
Confidence 6788887 6899 99999999999999999998 7788999999999999999987 99999999996 35
Q ss_pred CCeeEcCHHHHHHHHHHHHHhcC----CCCEEEEeCC-CCcHHHHHHHHHHHHHcCCCccccCCCcc----chhhhhhcC
Q 009859 132 GRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAGR-LSDAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSG 202 (523)
Q Consensus 132 g~~~~isWdeAl~~ia~~L~~~~----~~~i~~~~g~-~~~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~~~~~~~ 202 (523)
|+|++|||||||++||++|++++ +++++++.|. ..+.+..+++++|++.+|++|+++..+.+ +....+|..
T Consensus 156 g~~~~iSWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~~ 235 (976)
T 2ivf_A 156 GKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKM 235 (976)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSCC
T ss_pred CCeEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecCC
Confidence 89999999999999999999875 3688877664 45555668889999999999887543321 233456543
Q ss_pred cccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHH-------
Q 009859 203 YIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT------- 269 (523)
Q Consensus 203 ~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~------- 269 (523)
. .+.++.|+++||+||+||+||.+++|....+++++++ +|+|||+|||+++.|++.++ ||+|.+.
T Consensus 236 ~-~~~~~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~-~GakvivVDPr~t~ta~~AD~wl~irPGTD~Al~~am~~~ 313 (976)
T 2ivf_A 236 H-MGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSEARY-KGAEVVVIAPDFNPTTPAADLHVPVRVGSDAAFWLGLSQV 313 (976)
T ss_dssp C-CBCCGGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHH-HTCEEEEECSSCCTTGGGCSEEECCCTTCHHHHHHHHHHH
T ss_pred C-CCCChhhHhhCcEEEEeCCChhHcccHHHHHHHHHHH-cCCEEEEECCCCCcchhhcCeEeccCCCcHHHHHHHHHHH
Confidence 2 2357899999999999999999999999999999865 89999999999999988765 4555431
Q ss_pred --------------------------------------------------------------------------------
Q 009859 270 -------------------------------------------------------------------------------- 269 (523)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (523)
T Consensus 314 ii~e~l~D~~fv~~~t~g~~lv~~~~g~~l~~~d~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~l~g~~~~~g~~g 393 (976)
T 2ivf_A 314 MIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKASRGTLKLDFMPALEGTFSARLKNG 393 (976)
T ss_dssp HHHTTCSCHHHHHHHBSTTSEEETTTCSBCBHHHHHSCCTTCEEEEETTTTEEEEECSSCCCCSSCCCCSCEEEEECTTS
T ss_pred HHHcCCccHHHHHHhcCCceEEecCCCcccchhhccccCCCceEEEEcCCCCeecCcccccccccCccceeeEEEecCCC
Confidence
Q ss_pred -----------------------HHHHHcC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCC
Q 009859 270 -----------------------LLEIAEG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI 321 (523)
Q Consensus 270 -----------------------l~~~~~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~ 321 (523)
++++ +| |+++|++|++++ ++|++|+|++++.+|.+..+++.+|+.++|++
T Consensus 394 ~~~~~~t~f~~l~~~~~~~tpe~aa~i-tGVp~~~I~~lAr~~a~~~-~~i~~g~G~~~~~~g~~~~rai~~L~~l~Gni 471 (976)
T 2ivf_A 394 KTIQVRTVFEGLREHLKDYTPEKASAK-CGVPVSLIRELGRKVAKKR-TCSYIGFSSAKSYHGDLMERSLFLAMALSGNW 471 (976)
T ss_dssp CEEEEEEHHHHHHHHGGGGSHHHHHHH-HCCCHHHHHHHHHHHHHSC-EEEEECTTTTTBTTHHHHHHHHHHHHHHTTCS
T ss_pred ceeeeeeHHHHHHHHhhcCCHHHHHHH-HCcCHHHHHHHHHHHHhcc-ceeeecccccchhhHHHHHHHHHHHHHHhCCC
Confidence 1222 24 688999999998 99999999999999999999999999999999
Q ss_pred CCCCCceeecc----hhhHHhhHHh----------------------------------------c----C--------C
Q 009859 322 RPDWNGLNVLL----LNAAQAAALD----------------------------------------L----G--------L 345 (523)
Q Consensus 322 ~~~g~g~~~l~----~~~n~~g~~~----------------------------------------~----g--------~ 345 (523)
|++|+|++.+. +..|.+|+.. . . .
T Consensus 472 g~~Ggg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 551 (976)
T 2ivf_A 472 GKPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMWLY 551 (976)
T ss_dssp SSTTCCSCBCCCCCHHHHHHHHCSSCGGGTTTHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTEECHHHHHH
T ss_pred CCCCCccccCCcCcCCccccccccCcccccccchhccccccccccccccccCHHHHHHhhhccCCCcccccccccccccc
Confidence 99998887665 4333222100 0 0 0
Q ss_pred CCC---------------------cc----cc--------------ccCccEEEEEcCCCCC--------CCCC-CCCce
Q 009859 346 VPE---------------------SS----NS--------------IESAKFVYLMGADDVD--------LEKL-PNDAF 377 (523)
Q Consensus 346 ~p~---------------------~~----~~--------------~~~i~~l~~~g~n~~~--------~~~l-~~~~f 377 (523)
.|. .. .. +++||++|++++||+. .++| +|++|
T Consensus 552 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~p~~ik~l~i~g~Np~~s~p~~~~~~~al~~kld~ 631 (976)
T 2ivf_A 552 YHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKRSGAKMFPDVLFPKLKM 631 (976)
T ss_dssp HHSSTHHHHTCGGGSCTTSSSCHHHHHHHHHHTTSSCTTTSCSCTTSCCCEEEEESCCHHHHSTTHHHHHHHTTGGGCSE
T ss_pred CchhhhhhhhhhhccccccchhhHHHHHHHHhcCCcccccccccCCCCCcEEEEEcCCChHhcCCCHHHHHHHHhcCCCE
Confidence 000 00 01 3389999999999964 2578 99999
Q ss_pred EEEEcccCCcccCcceEEecCCCCCCCCceeec--CCCceEeecCccCCCCCCccHHHHHHHHHHHhCC
Q 009859 378 VVYQGHHGDHGVYRANVILPASAFSEKEGTYEN--TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 444 (523)
Q Consensus 378 vV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n--~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~ 444 (523)
+|++|+|+|+|+++||||||+++|+|++|+++| .++++|.++|+|+|+||+|+||+|+++||++||.
T Consensus 632 ~Vv~D~~~teTa~~ADiVLPaat~~Ek~g~~~~~~~~~~v~~~~~av~P~gear~d~~I~~~LA~rlg~ 700 (976)
T 2ivf_A 632 IFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIALILKKVGE 700 (976)
T ss_dssp EEEEESBCCTTGGGCSEEEEBCCTTEEEEECCCCSSSCEEEEEEECSCCSTTCBCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCccHhhCCEeecCCcccccCCcccCCCCCCeEEEecccCCCCCCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999 8999999999999999999999999999999987
No 12
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=100.00 E-value=5.7e-59 Score=530.16 Aligned_cols=385 Identities=15% Similarity=0.139 Sum_probs=309.0
Q ss_pred ccccccccccc---------eeeeeeec-cCCCCCcEEEEEECCEEEEEecCCCCC-------CCccccccccccccCCC
Q 009859 55 PFAFKARNWEL---------KGTETIDV-TDAVGSNIRIDSRGPEVMRILPRLNED-------INEEWISDKTRFCYDGL 117 (523)
Q Consensus 55 ~~~~~aR~Wel---------~~~~siC~-~C~~gC~i~v~vr~g~v~rv~~~~~~~-------~n~~~lC~kGr~~~~~~ 117 (523)
.++|++|+||. +.+.|+|+ +|++||++.|+|+||+|+++++++++| .|++++|.||++.++.+
T Consensus 24 ~~~~~~r~we~~yr~~w~~dk~v~stc~~~C~~gC~i~v~VkdG~vv~v~g~~~~P~~~~d~p~n~g~lC~KG~~~~~~~ 103 (1247)
T 1q16_A 24 QLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYL 103 (1247)
T ss_dssp EEECCCCGGGHHHHHHHCCSEEEEECCCSTTSCCCCEEEEEETTEEEEEEECCCSCCCCTTSCCCTTCCCHHHHTGGGGT
T ss_pred ccccCCccHHHhhhccccCCeeEeeeeCCCCCCCCCEEEEEECCEEEEEEcCCCCCcccccCccccCCcCHHHHHHHHhh
Confidence 36788999998 56889985 899999999999999999999987654 57789999999999999
Q ss_pred C-CCCCCCcEEe-------------------------------------CCCCCeeEcCHHHHHHHHHHHHHhcC----C
Q 009859 118 K-SQRLNDPMIR-------------------------------------GADGRFKAVNWRDALAVVAEVMLQAK----P 155 (523)
Q Consensus 118 ~-~~Rl~~Pl~R-------------------------------------~g~g~~~~isWdeAl~~ia~~L~~~~----~ 155 (523)
+ |+||++||+| +|+|+|++|||||||++||++|++++ +
T Consensus 104 ysp~RL~~Pl~R~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~g~RG~g~f~~iSWDEAld~IA~~l~~i~~~~Gp 183 (1247)
T 1q16_A 104 YSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGP 183 (1247)
T ss_dssp TSTTBCCSCEEEHHHHHHHHHHHTTCSSHHHHHHHHHTCHHHHHHHHTTTTSSCEEECCHHHHHHHHHHHHHHHHHHTCG
T ss_pred cCcccccCccccchhhhhhhhhhhccCChhhhhhhhccChhhhhhccccccCCceeEeCHHHHHHHHHHHHHHHHHHhCC
Confidence 7 8999999999 25789999999999999999998765 3
Q ss_pred CCEEEEeCCCCcHHHHHHH-HHHHHHcCCCccccCCCccch----hhhhhcCcccCCCccccccCCEEEEEcCCCCcchh
Q 009859 156 EEIVGIAGRLSDAESMMAL-KDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAA 230 (523)
Q Consensus 156 ~~i~~~~g~~~~~e~~~~~-~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p 230 (523)
++|+++++...+.|..+++ ++|++.+|+.++++....|.. ...+|... ...++.|+++||+||+||+||..++|
T Consensus 184 ~sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~~G~~~-~~~~~~D~~~ad~iv~wGsN~~~t~~ 262 (1247)
T 1q16_A 184 DRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQT-DVPESADWYNSSYIIAWGSNVPQTRT 262 (1247)
T ss_dssp GGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCSC-CCCCGGGGGGCSEEEEESCCHHHHSG
T ss_pred ceEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHHhCCCC-CCCCHHHHhhCCEEEEECCCchhccH
Confidence 7898888766555666655 599999999988776666642 23344321 12467899999999999999999999
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCC--------------------------------------
Q 009859 231 MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTG-------------------------------------- 266 (523)
Q Consensus 231 ~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~-------------------------------------- 266 (523)
...+++++++ ++|+|||+|||+++.|+..++ ||+|
T Consensus 263 ~~~~~l~~ar-~~G~KvVvIDPr~t~ta~~AD~wl~irPGTD~AL~~am~~vIi~e~~~D~~~~~~~~fl~~~T~~p~LV 341 (1247)
T 1q16_A 263 PDAHFFTEVR-YKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLV 341 (1247)
T ss_dssp GGHHHHHHHG-GGTCEEEEECSSCCHHHHHSSEEECCCTTCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHBSTTBEE
T ss_pred HHHHHHHHHH-HCCCEEEEEeCCCCcchhhCCeEEeeCCCcHHHHHHHHHHHHHHCCCcccchhhHHHHHHHhcCCceee
Confidence 8888898875 489999999999987755432 2222
Q ss_pred --------------------------------------------------------------------------------
Q 009859 267 -------------------------------------------------------------------------------- 266 (523)
Q Consensus 267 -------------------------------------------------------------------------------- 266 (523)
T Consensus 342 ~~~~~~~~~~~g~~Lr~~d~~~~~~~~~~~~~~~~v~D~~g~~~~p~gt~G~~~~~~~~wnl~~~~~~~~~~~~p~L~~~ 421 (1247)
T 1q16_A 342 MLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLL 421 (1247)
T ss_dssp EEEECSSSEEEEEECBGGGSTTGGGCCSSGGGCBCEEBTTSCEECBTTSGGGTSSSCSCCSCCSBBTTTCCBCCBCCCCT
T ss_pred ecccccccccccceeehhhcccccccccccccceEEEcCCCCcccCCCcccccccccccccccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 009859 267 -------------------------------------------------------------------------------- 266 (523)
Q Consensus 267 -------------------------------------------------------------------------------- 266 (523)
T Consensus 422 ~~~~~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~~~v~tvfd~l~~~y~~~~~l~g~~~~~~~~d~~ 501 (1247)
T 1q16_A 422 GSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVK 501 (1247)
T ss_dssp TSCSEEEEEEEECCTTCCCTTSCCCCCCSEEEEEEEEEEEECTTSCEEEEEEHHHHHHHHTTBCCSSCCTTSBSSTTSCC
T ss_pred ccccccceeccccccccccccccccccccceeccccceeecccCCceeeeccHHHHHHHHhccccccccccccccccccc
Confidence
Q ss_pred ---HHHHHHHHcC-----cHHHHHHHhcC-----CCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecch
Q 009859 267 ---PKTLLEIAEG-----RHPFFSAISNA-----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLL 333 (523)
Q Consensus 267 ---~~~l~~~~~g-----i~~~a~~l~~a-----~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~ 333 (523)
|++.+++ +| |+++|++|+++ ++++|++|+|++++.+|.+..+++.+|+.+||++|++|+|+..+.+
T Consensus 502 ~yTPe~a~~i-TGVpa~~I~~lAr~~A~~a~~~~~~~~i~~g~G~~~~~~g~~~~rai~~L~~LtG~iG~~GGG~~~~~G 580 (1247)
T 1q16_A 502 AYTPAWAEQI-TGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVG 580 (1247)
T ss_dssp TTCHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHTSCEEEEECHHHHTSTTHHHHHHHHHHHHHHTTCTTSTTCEEEECSS
T ss_pred cCCHHHHHHH-HCcCHHHHHHHHHHHHhhccccCCCeEEEcCccccccccHHHHHHHHHHHHHHhCCCCCCCCccccCCC
Confidence 2222333 35 68999999975 8899999999999999999999999999999999999998876544
Q ss_pred hhHHhh---------------------------------------------------------------HHhcCCCCCcc
Q 009859 334 NAAQAA---------------------------------------------------------------ALDLGLVPESS 350 (523)
Q Consensus 334 ~~n~~g---------------------------------------------------------------~~~~g~~p~~~ 350 (523)
+.|..+ +..+|..|...
T Consensus 581 q~~~~~~~g~~~~~~~~d~~~~~R~~~~~~~~y~~~~~~~y~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~w~p~~p 660 (1247)
T 1q16_A 581 QEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAP 660 (1247)
T ss_dssp CCCCTTHHHHHHHHTTTTTCSCCEEECHHHHHHHHTTGGGGCCCCSGGGSCTTSCGGGSCSCHHHHHHHHHHTTSSCCSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccccccchhhhhhhhcccCCCcc
Confidence 322100 01122222100
Q ss_pred --------------------------c-cccC--------------ccEEEEEcCCCCC---------------------
Q 009859 351 --------------------------N-SIES--------------AKFVYLMGADDVD--------------------- 368 (523)
Q Consensus 351 --------------------------~-~~~~--------------i~~l~~~g~n~~~--------------------- 368 (523)
. ..++ +|++|++++||+.
T Consensus 661 ~~~~n~~~~~~~a~~~G~~~~~~~~~~l~~G~ik~~~~~P~~p~~~~r~l~i~~~Npl~s~~kG~~~f~~h~lg~~~~~~ 740 (1247)
T 1q16_A 661 QLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ 740 (1247)
T ss_dssp CBSSCTTSHHHHHHHTTSCHHHHHHHHHHHTSSCBGGGCTTSSSSSCCEEEEESCCTTTTTCSSHHHHHHHTTCSCCCCC
T ss_pred ccccChhhhhhhhhhccCcHHHHHHHHHhcCCccccccCCCCcccCccEEEEEccChhhccccccchhhhhhcccccccc
Confidence 0 1233 4569999998752
Q ss_pred -----------C-------CC-CCCCceEEEEcccCCcccCcceEEecCCCCCCCCc-eeecCCCceEeecCccCCCCCC
Q 009859 369 -----------L-------EK-LPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEG-TYENTEGCTQQTLPAVPTVGDA 428 (523)
Q Consensus 369 -----------~-------~~-l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~g-t~~n~eg~~q~~~~~v~p~ge~ 428 (523)
+ ++ +++++|+|++|+++|+|++|||||||+++|+|++| ++.+.+++++.++|+|+|+||+
T Consensus 741 ~~~~~~~~~~~p~~~~~~~~a~l~klDfvVv~D~~mTeTA~yADIVLPaat~~Ek~d~~~t~~~~~i~~~~~aVeP~gEa 820 (1247)
T 1q16_A 741 GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEA 820 (1247)
T ss_dssp SCCTTTTTCCCCSSSCCCSSCCCCCCSEEEEEESBCCHHHHTCSEEEEBCCTTSSCEEECCSSCSEEEEECCSSCCSTTC
T ss_pred ccccccccccCccHHHHhhhhcccCCCeEEEEecccCchHhhccEEeccCcccccCCcccccCCceEEEeccccCCcccc
Confidence 1 25 68899999999999999999999999999999999 6778999999999999999999
Q ss_pred ccHHHHHHHHHHHh
Q 009859 429 RDDWKIIRALSEVA 442 (523)
Q Consensus 429 r~d~~Il~~La~~l 442 (523)
|+||+|+.+||++|
T Consensus 821 rsD~eI~~eLAkrl 834 (1247)
T 1q16_A 821 KSDWEIYKAIAKKF 834 (1247)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999999998
No 13
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=100.00 E-value=8e-59 Score=525.82 Aligned_cols=388 Identities=13% Similarity=0.115 Sum_probs=297.3
Q ss_pred eeeeeeeccCCCCCcEEEEEECCEEEEEec---CCC---------------CCCCccccccccccccCCCC-CCCCCCcE
Q 009859 66 KGTETIDVTDAVGSNIRIDSRGPEVMRILP---RLN---------------EDINEEWISDKTRFCYDGLK-SQRLNDPM 126 (523)
Q Consensus 66 ~~~~siC~~C~~gC~i~v~vr~g~v~rv~~---~~~---------------~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl 126 (523)
+.+.++|++|+++| .|+|+||+|+||+| +++ +|+|+|++|.||++.++.++ |+||++||
T Consensus 3 ~~~~~~~~~cg~~~--~v~v~dg~vv~v~g~~~~~~~~~~~~~~~~~g~~~~p~n~G~~C~kg~~~~~~~~~pdRl~~Pl 80 (875)
T 1ti6_A 3 EVVRLTNSSTGGPV--FVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPYPM 80 (875)
T ss_dssp CCEEEEECCTTCCE--EEEEETTEEEEEECCBCCTTTSCCCCCEEETTEEECCCSBCCCCHHHHTTHHHHTCTTBCCSCE
T ss_pred ceeeeeccCcCCCe--EEEEECCEEEEEeCCCCCcccccccccccccccccCccccCCcChhhhhHHHhhcCcccccCCe
Confidence 46778999998877 79999999999999 444 67899999999999999987 89999999
Q ss_pred EeC-------------CC--------CCeeEcCHHHHHHHHHHHHHhcC----CCCEEEEeCC----CCcHHHHHHHHHH
Q 009859 127 IRG-------------AD--------GRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAGR----LSDAESMMALKDF 177 (523)
Q Consensus 127 ~R~-------------g~--------g~~~~isWdeAl~~ia~~L~~~~----~~~i~~~~g~----~~~~e~~~~~~~l 177 (523)
+|+ |+ |+|++|||||||++||++|++++ +++|+++.++ ....|+.+++++|
T Consensus 81 ~R~~~~~~~~~~~g~rG~~~~~~~~~g~~~~iSWdeAl~~iA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~rf 160 (875)
T 1ti6_A 81 KRKSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRF 160 (875)
T ss_dssp EETTCCTTSCCCGGGTTHHHHTTCGGGGEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHH
T ss_pred eecccccCCCcCcCCCCccccccccCCCEEEeeHHHHHHHHHHHHHHHHHHhCcceEEeecCCCcccCcccchhHHHHHH
Confidence 995 44 89999999999999999999876 3678776421 2334567889999
Q ss_pred HHHcCCCccccCCCc----cch------hhh-hhcCcccCCCccc-cccCCEEEEEcCCCCcchhhHH-----HHHHHHH
Q 009859 178 LNRMGSNNVWCEGTG----AQS------NAD-LRSGYIMNTSISG-LEKADCFLLVGTQPRVEAAMVN-----ARIRKTV 240 (523)
Q Consensus 178 ~~~lG~~~~~~~~~~----~~~------~~~-~~~~~~~~~~~~d-i~~ad~il~~G~n~~~~~p~~~-----~~lr~a~ 240 (523)
++.+|+.|+++.... |.. ... +|....++ ++.| +++||+||+||+|| +++|+.. ++++..+
T Consensus 161 ~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a 238 (875)
T 1ti6_A 161 MNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYD-LLEDGLKHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWL 238 (875)
T ss_dssp HHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGTTCCCCTT-HHHHHHHHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHH
T ss_pred HHhcCCCccccCcCccCccchhhhcccccceeeecccccC-CcHhHHhcCCEEEEECCCh-hhCCccCCCccchHHHHHH
Confidence 999998766554322 221 122 44332222 5555 89999999999999 9988632 4555434
Q ss_pred HhCCCeEEEEcCCCCCCcch-hc------cCCCHHH--------------------------------------------
Q 009859 241 RANNAKVGYIGPATDLNYDH-QH------LGTGPKT-------------------------------------------- 269 (523)
Q Consensus 241 ~~~g~klv~idp~~~~t~~~-a~------~g~~~~~-------------------------------------------- 269 (523)
+++|+|||+||||++.|+.. ++ ||+|.+.
T Consensus 239 ~~~G~klivIDPr~t~ta~~~Ad~~l~irPGTD~aL~~am~~~ii~e~l~D~~fi~~~t~Gf~~~~~~v~~~~dG~~~tp 318 (875)
T 1ti6_A 239 KDLGVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEEWADYVLGKTDGTPKTC 318 (875)
T ss_dssp HHTTCEEEEECSBCCHHHHHHCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEESHHHHHHHHTTTTTSCCCCH
T ss_pred HHcCCeEEEECCCCCCcccccCCEEeccCCCcHHHHHHHHHHHHHHccchhHHHHHhhhccHHHHHHHhcccccCCcCCH
Confidence 56999999999999999876 34 5766542
Q ss_pred --HHHHHcC-----cHHHHHHHhcCCCcEE----EEcCC-cccccCHHHHHHHHHHHHHHcCCCCCCCCceeec------
Q 009859 270 --LLEIAEG-----RHPFFSAISNAKNPVI----IVGAG-LFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVL------ 331 (523)
Q Consensus 270 --l~~~~~g-----i~~~a~~l~~a~~~~i----i~g~~-~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l------ 331 (523)
++++ +| |+++|++|++++ ++| ++|++ +++|.+|.+..+++.+|+.++| +|++|+|++..
T Consensus 319 e~aa~i-tGv~~~~I~~lA~~~a~~~-~~i~~g~~~g~gG~~~~~~g~~~~~ai~~L~~ltG-ig~~Ggg~~~~~~~~~~ 395 (875)
T 1ti6_A 319 EWAEEE-SGVPACEIRALARQWAKKN-TYLAAGGLGGWGGACRASHGIEWARGMIALATMQG-MGKPGSNMWSTTQGVPL 395 (875)
T ss_dssp HHHHHH-HCSCHHHHHHHHHHHHHSC-EEEEETTTTSCCGGGSBTTHHHHHHHHHHHHHHTT-TTSTTCEECCSSSCCCC
T ss_pred HHHHHH-HCcCHHHHHHHHHHHHhcC-CeeecccccccchhhhccccHHHHHHHHHHHHHhC-CCCCCCccccCcccccc
Confidence 2222 24 688999999987 777 55778 9999999999999999999999 99999887654
Q ss_pred -------chh-hHHhhHHhcCC------------C-----------CCc-------------c-----------cc----
Q 009859 332 -------LLN-AAQAAALDLGL------------V-----------PES-------------S-----------NS---- 352 (523)
Q Consensus 332 -------~~~-~n~~g~~~~g~------------~-----------p~~-------------~-----------~~---- 352 (523)
... .+.+|+.+++. . |.. . ..
T Consensus 396 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~g~~~~~ 475 (875)
T 1ti6_A 396 DYEFYFPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSAGQHIPRLKIPECIMGGKFQWSGKGFAGGDISH 475 (875)
T ss_dssp CTTSCCCCGGGCTTSCCTTTSGGGTTHHHHHCCSSSCCCCCCSSSSTTSCEEEGGGHHHHHHHSCEEEECCSSCCSSTTG
T ss_pred ccccccccccccCcCCcccccccccchhhhccccccCCCccccCCccccccccHHHHHHHHhCCCccccccccccccchh
Confidence 222 12224221111 0 100 0 00
Q ss_pred -----------ccCccEEEEEcCCCCC--------CCCCC--CCceEEEEcccCCcccCcceEEecCCCCCCCCcee---
Q 009859 353 -----------IESAKFVYLMGADDVD--------LEKLP--NDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTY--- 408 (523)
Q Consensus 353 -----------~~~i~~l~~~g~n~~~--------~~~l~--~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~--- 408 (523)
.++||++|++++||+. .++|+ +++|+|++|+|+|+|+++||||||+++|+|++|+.
T Consensus 476 ~~~~~~~~~~~~~~ik~l~~~g~Np~~s~p~~~~~~~aL~d~kldf~Vv~D~~~teTa~~ADvVLP~a~~~E~~~~~~~~ 555 (875)
T 1ti6_A 476 QLHQYEYPAPGYSKIKMFWKYGGPHLGTMTATNRYAKMYTHDSLEFVVSQSIWFEGEVPFADIILPACTNFERWDISEFA 555 (875)
T ss_dssp GGCEEEESCTTCCCCCEEEEESCCHHHHSSSTHHHHHHTTCTTCCEEEEEESBSCTTGGGCSEEEEBCCGGGSCEEEETT
T ss_pred hhhhccccccCCCCeEEEEECCCChhhcCCCHHHHHHHHhhcCCCEEEEEccccCcchhhccEEecCCccccccCccccc
Confidence 2479999999999963 24688 99999999999999999999999999999999754
Q ss_pred -----ecC------CCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHH
Q 009859 409 -----ENT------EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRT 460 (523)
Q Consensus 409 -----~n~------eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~---~~~~~i~~~~~~ 460 (523)
.|. +|++|.++|+++|+||+|+||+|+++||++||.+..| .+.+++++++..
T Consensus 556 ~~~t~~~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rlg~~~~f~~~~~~~~~~~~~~~ 621 (875)
T 1ti6_A 556 NCSGYIPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLNIEEMFSEGKDELAWCEQYFN 621 (875)
T ss_dssp CCBTTBTTGGGGSSSCEEEEECCCSCCSTTCBCHHHHHHHHHHHTTCHHHHHTTCCHHHHHHHHHH
T ss_pred cccccCCccccccccceEEEeecccCCCCCCCCHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHH
Confidence 455 7799999999999999999999999999999986322 456666665543
No 14
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=100.00 E-value=1.7e-56 Score=501.50 Aligned_cols=363 Identities=16% Similarity=0.179 Sum_probs=287.0
Q ss_pred cCCCCCc-EEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC--------------CCCCeeEc
Q 009859 74 TDAVGSN-IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG--------------ADGRFKAV 137 (523)
Q Consensus 74 ~C~~gC~-i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~--------------g~g~~~~i 137 (523)
+|+.+|+ |.|+++||+|+||+|+++++. .|.+|++.++.+| |+||++||+|+ |+|+|++|
T Consensus 9 ~~~~~cg~l~v~v~dg~vv~v~g~~~~~~----~~~~~~~~~~~~~~pdRl~~Pl~R~~~~~~~~~~~~g~rG~g~~~~i 84 (780)
T 1eu1_A 9 MSGCHWGVFKARVENGRAVAFEPWDKDPA----PSHQLPGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRV 84 (780)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTCSS----CCTTHHHHHHTTTSTTBCCSCEEEHHHHHHGGGSCGGGTTSSCEEEC
T ss_pred eeccccCcEEEEEECCEEEEEecCCCCCC----cChhhhhhhhhhcChhhhcCCeeeccccccCCCCcccCCCCCCeEEe
Confidence 4666676 999999999999999987765 3999999999997 89999999994 57899999
Q ss_pred CHHHHHHHHHHHHHhcCC----CCEEEE----eCCCCcHHHHHHHHHHHHHcCCCccccCCCccc------hhhhhhcCc
Q 009859 138 NWRDALAVVAEVMLQAKP----EEIVGI----AGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ------SNADLRSGY 203 (523)
Q Consensus 138 sWdeAl~~ia~~L~~~~~----~~i~~~----~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~------~~~~~~~~~ 203 (523)
||||||++||++|+++++ ++|++. .+.....|+.+++++|++.+|+ ++++..+.|. +...+|...
T Consensus 85 SWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~g~~~~~~~~~~~f~~~~G~-~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (780)
T 1eu1_A 85 TWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGG-FVNSSGDYSTAAAQIIMPHVMGTLE 163 (780)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCHHHHHHHHHHHHTC-CBEEESCSSSTTHHHHHHHHTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEecccCCcccccccchhHHHHHHHHhcCC-CcCCCCCcccchhhhccCceecccc
Confidence 999999999999998763 677542 2222223456888999999997 4444443332 233455443
Q ss_pred ccC--CCcc-ccccCCEEEEEcCCCCcchhh--------HHHHHHHHHHhCCCeEEEEcCCCCCCcchh-c------cCC
Q 009859 204 IMN--TSIS-GLEKADCFLLVGTQPRVEAAM--------VNARIRKTVRANNAKVGYIGPATDLNYDHQ-H------LGT 265 (523)
Q Consensus 204 ~~~--~~~~-di~~ad~il~~G~n~~~~~p~--------~~~~lr~a~~~~g~klv~idp~~~~t~~~a-~------~g~ 265 (523)
.++ .++. |+++||+||+||+||.+++|+ ...+++++++ +|+|||+|||+++.|+..+ + ||+
T Consensus 164 ~~~~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~-~G~klivIDPr~t~ta~~aad~~l~irPGt 242 (780)
T 1eu1_A 164 VYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKE-KGTRVIAINPVRTETADYFGADVVSPRPQT 242 (780)
T ss_dssp TTSCCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHH-HTCEEEEESSBCCHHHHHHTCEEECCCTTC
T ss_pred ccCCCCCcHhHHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHH-CCCeEEEECCCCCCcccccCCEEeeeCCCC
Confidence 222 3555 789999999999999999875 4467888764 7999999999999998765 4 576
Q ss_pred CHHH----------------------------------------------HHHHHcC-----cHHHHHHHhcCCCcEEEE
Q 009859 266 GPKT----------------------------------------------LLEIAEG-----RHPFFSAISNAKNPVIIV 294 (523)
Q Consensus 266 ~~~~----------------------------------------------l~~~~~g-----i~~~a~~l~~a~~~~ii~ 294 (523)
|.+. ++++ +| |+++|++|++++ ++|++
T Consensus 243 D~AL~~am~~~ii~e~l~D~~fi~~~t~Gfe~~~~~v~~~~dg~~~tpe~aa~i-tGv~~~~I~~~A~~~a~~~-~~i~~ 320 (780)
T 1eu1_A 243 DVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTAEWAAEI-CGLPAEQIRELARSFVAGR-TMLAA 320 (780)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHTTTTTSCCCCHHHHHHH-HCSCHHHHHHHHHHHHSSC-EEEEE
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHhhhcHHHHHHHhcCCcCCCcCCHHHHHHH-HCcCHHHHHHHHHHHHhcC-CEEEe
Confidence 6432 2222 24 688999999887 88899
Q ss_pred cCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcC--CC---CC---------------------
Q 009859 295 GAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLG--LV---PE--------------------- 348 (523)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g--~~---p~--------------------- 348 (523)
|++++++.+|.+..+++.+|+.+||++|++|+|+++.... |.+|...++ .. |.
T Consensus 321 g~g~~~~~~g~~~~~ai~~L~~ltGnig~~Ggg~~~~~~~-n~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~ 399 (780)
T 1eu1_A 321 GWSIQRMHHGEQAHWMLVTLASMIGQIGLPGGGFGLSYHY-SNGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPC 399 (780)
T ss_dssp CSGGGSSTTTHHHHHHHHHHHHHHTCTTSTTCEEESCTTS-TTTTSCCCSCCCCCCCCCCC---CC-------CCSEEEG
T ss_pred echHhHHhhhHHHHHHHHHHHHHhCCCCCCCCcccccccc-ccCCCcccccCCCCCCCCCCCCCchhhhhhhccccccCH
Confidence 9999999999999999999999999999999888654332 444432211 00 00
Q ss_pred cc---c--ccc-------------CccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCC
Q 009859 349 SS---N--SIE-------------SAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 402 (523)
Q Consensus 349 ~~---~--~~~-------------~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~ 402 (523)
.. . ..+ +||++|++|+||+. .++|++++|+|++|+|+|+|+++||||||+++|+
T Consensus 400 ~~~~~~~~~~g~~~~~~g~~~~~~~ik~l~~~g~Np~~~~pd~~~~~~al~~ldf~Vv~d~~~teTa~~ADvVLP~a~~~ 479 (780)
T 1eu1_A 400 ARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHADIVLPATTSY 479 (780)
T ss_dssp GGHHHHHHCTTCEEEETTEEEECCCCCEEEEESCCHHHHSSCHHHHHHHGGGCSEEEEEESBCCHHHHTCSEEEEBCCGG
T ss_pred HHHHHHHhcCCCccccCCcccCCCCeeEEEEeCCChhhcCccHHHHHHHHhcCCeEEEeccccCcchhhccEeccCCccc
Confidence 00 0 112 79999999999963 2568899999999999999999999999999999
Q ss_pred CCCcee---ecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCC
Q 009859 403 EKEGTY---ENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR 445 (523)
Q Consensus 403 E~~gt~---~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~ 445 (523)
|++|++ ++.++++|.++|+|+|+||+|+||+|+++||++||.+
T Consensus 480 E~~g~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rlg~~ 525 (780)
T 1eu1_A 480 ERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKG 525 (780)
T ss_dssp GSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHHHHHHHHHTTCH
T ss_pred ccCCccccccCCCceEEEeecccCCcccCCCHHHHHHHHHHHhCcH
Confidence 999987 7889999999999999999999999999999999985
No 15
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=100.00 E-value=2.3e-55 Score=495.57 Aligned_cols=359 Identities=14% Similarity=0.116 Sum_probs=284.8
Q ss_pred CcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CCCCCCcEEeC--------------CCCCeeEcCHHHHH
Q 009859 79 SNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG--------------ADGRFKAVNWRDAL 143 (523)
Q Consensus 79 C~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~Rl~~Pl~R~--------------g~g~~~~isWdeAl 143 (523)
|++.++++||+|+||+|+++++ ++|+||++.++.++ |+||++||+|+ |+|+|++|||||||
T Consensus 48 c~i~v~v~dg~v~~v~g~~~~~----~~~~~g~~~~~~~~~pdRl~~Pl~R~g~~~~~~~~~~~~rG~g~~~~iSWdeAl 123 (829)
T 1tmo_A 48 GAFKMKRKNGVIAEVKPFDLDK----YPTDMINGIRGMVYNPSRVRYPMVRLDFLLKGHKSNTHQRGDFRFVRVTWDKAL 123 (829)
T ss_dssp EEEEEEEETTEEEEEEECTTCS----SCCGGGGTHHHHHSCTTBCCSCEEEHHHHHHGGGSCGGGTTSCEEEECCHHHHH
T ss_pred CceEEEEECCEEEEEecCCCCC----CcchHHhhhhhhhcChhhcCCcceecccccCCCCcccccCCCCCeEEecHHHHH
Confidence 8999999999999999998765 37999999999987 89999999995 35899999999999
Q ss_pred HHHHHHHHhcCC----CCEEEE----eCCCCcHHHHHHHHHHHHHcCCCccccCCCcc------chhhhhhcCccc--CC
Q 009859 144 AVVAEVMLQAKP----EEIVGI----AGRLSDAESMMALKDFLNRMGSNNVWCEGTGA------QSNADLRSGYIM--NT 207 (523)
Q Consensus 144 ~~ia~~L~~~~~----~~i~~~----~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~------~~~~~~~~~~~~--~~ 207 (523)
++||++|+++++ ++|++. .+.....|+.+++++|++.+|+ ++++..+.| .+...+|....+ +.
T Consensus 124 ~~ia~~l~~i~~~~G~~~i~~~~~g~~~~g~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 202 (829)
T 1tmo_A 124 TLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVGMHGN-YVKKIGDYSTGAGQTILPYVLGSTEVYAQGT 202 (829)
T ss_dssp HHHHHHHHHHHHHTCGGGEECCCCCCCCSCTTTCHHHHHHHHHHTTCC-CBEEECCSSSTTHHHHHHHHTSSCCTTSCCC
T ss_pred HHHHHHHHHHHHhhCCceEEeccccCcccccccchhHHHHHHHHhcCC-cccCCCCcchhhhhhcccceEecccccCCCC
Confidence 999999998753 566542 2222233557889999999997 444443333 223345543322 24
Q ss_pred Cccc-cccCCEEEEEcCCCCcchhh--------HHHHHHHHHH--hCCC-eEEEEcCCCCCCcchh-c------cCCCHH
Q 009859 208 SISG-LEKADCFLLVGTQPRVEAAM--------VNARIRKTVR--ANNA-KVGYIGPATDLNYDHQ-H------LGTGPK 268 (523)
Q Consensus 208 ~~~d-i~~ad~il~~G~n~~~~~p~--------~~~~lr~a~~--~~g~-klv~idp~~~~t~~~a-~------~g~~~~ 268 (523)
++.| +++||+||+||+||.+++|+ ...+++++.+ ++|+ |||+|||+.+.|+..+ + ||+|.+
T Consensus 203 ~~~~~~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~irPGtD~a 282 (829)
T 1tmo_A 203 SWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVT 282 (829)
T ss_dssp CHHHHHHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEECCCTTCHHH
T ss_pred chHhhHhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEecccCCCHHH
Confidence 5666 79999999999999999886 5567777653 1788 9999999999998877 4 577654
Q ss_pred H----------------------------------------------HHHHHcC-----cHHHHHHHhcCCCcEEEEcCC
Q 009859 269 T----------------------------------------------LLEIAEG-----RHPFFSAISNAKNPVIIVGAG 297 (523)
Q Consensus 269 ~----------------------------------------------l~~~~~g-----i~~~a~~l~~a~~~~ii~g~~ 297 (523)
. ++++ +| |+++|++|+++ +++|++|++
T Consensus 283 l~~a~~~~ii~e~l~D~~fi~~~t~gf~~~~~~v~~~~dg~~~tpe~aa~i-tGv~~~~I~~~A~~~a~~-~~~i~~g~g 360 (829)
T 1tmo_A 283 LMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGVAKTPEWAAPI-CGVEAHVIRDLAKTLVKG-RTQFMMGWC 360 (829)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHHTTTTSCCCCHHHHHHH-HTCCHHHHHHHHHHHHHS-CEEEEECSG
T ss_pred HHHHHHHHHHHCCcccHHHHHHhcccHHHHHHHhcCCCCCCcCCHHHHHHH-HCcCHHHHHHHHHHHhcC-CCEEEeccc
Confidence 2 2222 24 68899999975 788999999
Q ss_pred cccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhc-CCCC----C--------c------------cc-
Q 009859 298 LFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL-GLVP----E--------S------------SN- 351 (523)
Q Consensus 298 ~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~-g~~p----~--------~------------~~- 351 (523)
++++.+|.+..+++.+|+.+||++|++|+|++..... |.+|...+ +..| . . ..
T Consensus 361 ~~~~~~g~~~~~ai~~L~~ltGnig~~Ggg~~~~~~~-n~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (829)
T 1tmo_A 361 IQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHY-SSIGVPSSGAAAPGAFPRNLDENQKPLFDSSDFKGASSTIPV 439 (829)
T ss_dssp GGSSTTTHHHHHHHHHHHHHHTCTTSTTCEEESCTTS-TTTTSCCCCCCCCCCCCSSCCTTCCCSSCCCCCTTSCSEEEG
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCCCCCCccccccc-ccCCCccccccCCccCCccccccccccCChhHhhcccccccH
Confidence 9999999999999999999999999999888654433 44443321 1111 1 0 00
Q ss_pred --------c-------------ccCccEEEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCC
Q 009859 352 --------S-------------IESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 402 (523)
Q Consensus 352 --------~-------------~~~i~~l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~ 402 (523)
. .++||++|++|+||+. .++|++++|+|++|+|+|+|+++||||||+++|+
T Consensus 440 ~~~~~~i~~~g~~~~~~g~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~aL~~ldf~Vv~d~~~teTa~~ADvvLP~a~~~ 519 (829)
T 1tmo_A 440 ARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTVDVNWTATCRFSDIVLPACTTY 519 (829)
T ss_dssp GGHHHHHHSTTCEEECSSSEEECCCCCEEEEESCCHHHHSSCHHHHHHHHTTCSEEEEEESBCCHHHHTCSEEEEBCCGG
T ss_pred hHHHHHHhCCCCccccCCcccCCCCeEEEEEeCCCccccCcCHHHHHHHHhCCCeEEEecCcCCchhhhccEeccCCchh
Confidence 1 1379999999999963 2468899999999999999999999999999999
Q ss_pred CCCcee---ecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCC
Q 009859 403 EKEGTY---ENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR 445 (523)
Q Consensus 403 E~~gt~---~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~ 445 (523)
|++|++ +|.++++|.++|+|+|+||+|+||+|+.+||++||.+
T Consensus 520 E~~g~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~~lg~~ 565 (829)
T 1tmo_A 520 ERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEIFTRFAAVLGKE 565 (829)
T ss_dssp GSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHHHHHHHHHTTCH
T ss_pred ccCCccccccCCCceEEEEecccCCcccCcCHHHHHHHHHHHhCcc
Confidence 999998 7899999999999999999999999999999999976
No 16
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.58 E-value=7.9e-06 Score=87.51 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=51.8
Q ss_pred CeeeecccccccceeeeecCCCCceEecCCCCCc---CcccccccccccccCccccccccccccccc
Q 009859 1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLM---TSELSGNVIDICPVGALTSKPFAFKARNWE 64 (523)
Q Consensus 1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~---~~~~~Gn~idvCPvGAlt~k~~~~~aR~We 64 (523)
||||+|.++.|..+|.+.+||.++.|++.....+ .|..||+|+++||+|||+.+.. ..+.|+
T Consensus 152 ~Cv~~CP~~~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~--~~~v~~ 216 (574)
T 3c8y_A 152 RCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSH--MDRVKN 216 (574)
T ss_dssp HHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCC--HHHHHH
T ss_pred CccchhCchhcCCceeeccCCccceecccccceechhhCCcchhHHHhhccCCcccccc--HHHHHH
Confidence 6999999999999999999999999987655444 4778999999999999999873 234555
No 17
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=96.04 E-value=0.0011 Score=50.63 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=28.1
Q ss_pred cCcccccccccccccCccccccccccccccccee
Q 009859 34 MTSELSGNVIDICPVGALTSKPFAFKARNWELKG 67 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~ 67 (523)
-.+..||.|+++||+|||+-+.+....++|.+..
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~g~ 78 (80)
T 1jb0_C 45 EDCVGCKRCETACPTDFLSIRVYLGAETTRSMGL 78 (80)
T ss_dssp GGCCCCCHHHHHCCSSSCSEEEECCSCCTTTTTC
T ss_pred CcCcCcCChhhhCCCCccEeeeecchHHHhhhcc
Confidence 3577899999999999999888887777777654
No 18
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=94.36 E-value=0.017 Score=40.81 Aligned_cols=18 Identities=44% Similarity=0.822 Sum_probs=15.4
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.+..||.|+++||+|||+
T Consensus 40 ~c~~C~~C~~~CP~~Ai~ 57 (59)
T 1dwl_A 40 TAECAQDAIDACPVEAIS 57 (59)
T ss_dssp CCGGGGTGGGGSTTCCEE
T ss_pred hhhHHHHHHHhCCHhhEE
Confidence 466789999999999986
No 19
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=94.24 E-value=0.18 Score=44.54 Aligned_cols=116 Identities=13% Similarity=0.005 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCC-CcHHHHHHHHHHHHHcCCCccccCCCcc----chh--hh--hhcCcccCCC--c--
Q 009859 143 LAVVAEVMLQAKPEEIVGIAGRL-SDAESMMALKDFLNRMGSNNVWCEGTGA----QSN--AD--LRSGYIMNTS--I-- 209 (523)
Q Consensus 143 l~~ia~~L~~~~~~~i~~~~g~~-~~~e~~~~~~~l~~~lG~~~~~~~~~~~----~~~--~~--~~~~~~~~~~--~-- 209 (523)
++.+++.|++. ++..++.|+. ...+....+.+|++.+|.+.+.+..... ... .. +|.....+.. .
T Consensus 24 v~~aa~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~ 101 (170)
T 3cf4_G 24 PEMAAKIISKA--KRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPG 101 (170)
T ss_dssp HHHHHHHHHHC--SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCC
T ss_pred HHHHHHHHHcC--CCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhH
Confidence 56667777765 3666666653 3344556788999999998765433211 111 11 2211111111 2
Q ss_pred -cccccCCEEEEEcCCC--CcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhccCCC
Q 009859 210 -SGLEKADCFLLVGTQP--RVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTG 266 (523)
Q Consensus 210 -~di~~ad~il~~G~n~--~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~~g~~ 266 (523)
.-+++||+||++|+++ .+..+. .+.. .. . .++|.|+............+..
T Consensus 102 ~~~~~~aDlvl~iG~~~~~~~~~t~---~~~~-~~-~-~~iI~i~~~~~~~~~~~~~~l~ 155 (170)
T 3cf4_G 102 LDGNGNYDMIITIGFKKFYINQVLS---AAKN-FS-N-LKTIAIERGYIQNATMSFGNLS 155 (170)
T ss_dssp SSSSCCCSEEEEESCCHHHHHHHHH---HHHH-HC-C-CCEEECSSSCCTTSSEECCCCC
T ss_pred HHHhhcCCEEEEECCccCccccccc---cccc-cC-C-CeEEEECCCcccchhhhhccCC
Confidence 4478999999999987 443322 1111 11 3 7899888876555444434444
No 20
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=93.81 E-value=0.01 Score=41.94 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.4
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.+..||.|+++||+|||+
T Consensus 39 ~C~~C~~C~~~CP~~Ai~ 56 (58)
T 1f2g_A 39 DLDCVEEAIDSCPAEAIV 56 (58)
T ss_dssp CSTHHHHHHHTCSSCCCB
T ss_pred chHHHHHHHhhCChhhEE
Confidence 467789999999999986
No 21
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.02 E-value=0.018 Score=40.79 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=14.5
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.+..||.|+++||+|||+-
T Consensus 40 ~c~~C~~C~~~CP~~Ai~~ 58 (60)
T 1rof_A 40 DLPCAKDAADSCPTGAISV 58 (60)
T ss_dssp CSTTHHHHHHHCTTCCEEC
T ss_pred hHHHHHHHHHhCCHhHEEE
Confidence 4556788888888888863
No 22
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=91.96 E-value=0.013 Score=42.41 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=14.4
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.+..||.|+++||+|||+-
T Consensus 43 ~C~~C~~C~~~CP~~Ai~~ 61 (64)
T 1dax_A 43 SQEEVEEAMDTCPVQCIHW 61 (64)
T ss_dssp CHHHHHHHHHHSSSCCEEC
T ss_pred chhHHHHHHHhCCHhhEee
Confidence 3556788888888888864
No 23
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=91.66 E-value=0.039 Score=56.42 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=13.1
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+.+||+||+...
T Consensus 34 kCi~Cg~C~~~CP~~ai~~~ 53 (421)
T 1hfe_L 34 KCIGCDTCSQYCPTAAIFGE 53 (421)
T ss_dssp TCCCCCHHHHHCTTCCCBCC
T ss_pred cCCCccHHHHhcCcCceecc
Confidence 35567777777777777643
No 24
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=91.52 E-value=0.025 Score=65.46 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=21.8
Q ss_pred CcCccccccccccccc--Ccccccccc
Q 009859 33 LMTSELSGNVIDICPV--GALTSKPFA 57 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPv--GAlt~k~~~ 57 (523)
+..|..||+|+++||+ |||+-++..
T Consensus 741 ~~~C~gCG~Cv~vCP~~~~AI~~~~~~ 767 (1231)
T 2c42_A 741 TLDCMGCGNCADICPPKEKALVMQPLD 767 (1231)
T ss_dssp TTTCCCCCHHHHHCSSSSCSEEEEEGG
T ss_pred hhhCCChhHHHhhCCCCccCeEEecch
Confidence 3468999999999999 999988855
No 25
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=91.42 E-value=0.04 Score=44.10 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=15.7
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||++|+.-.
T Consensus 44 ~C~~Cg~C~~~CP~~ai~~~ 63 (103)
T 1xer_A 44 LCIADGSCINACPVNVFQWY 63 (103)
T ss_dssp TCCCCCHHHHHCTTCCCEEE
T ss_pred hCCChhhHHHHcCccCeecc
Confidence 46678999999999988643
No 26
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=90.81 E-value=0.018 Score=41.76 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=14.0
Q ss_pred cccccccccccccCcccc
Q 009859 36 SELSGNVIDICPVGALTS 53 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~ 53 (523)
+..||.|+++||+|||+-
T Consensus 46 c~~c~~C~~~CP~~Ai~~ 63 (66)
T 1sj1_A 46 YNCAKEAMEACPVSAITI 63 (66)
T ss_dssp HHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhhCCHhhEEE
Confidence 346788999999998863
No 27
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=88.08 E-value=0.1 Score=36.25 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=16.1
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.+..||.|+++||+|||+
T Consensus 36 ~C~~C~~C~~~CP~~ai~ 53 (55)
T 2fdn_A 36 TCIDCGACAGVCPVDAPV 53 (55)
T ss_dssp TCCCCCHHHHTCTTCCEE
T ss_pred cCcChhChHHHcccccee
Confidence 567899999999999985
No 28
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=87.29 E-value=0.083 Score=40.18 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=20.2
Q ss_pred cccccccccccccCccccccccccccc
Q 009859 36 SELSGNVIDICPVGALTSKPFAFKARN 62 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k~~~~~aR~ 62 (523)
+..||.|+++||+|||+-..-.|..+|
T Consensus 51 c~~C~~C~~~CP~~AI~~~~~~~~~~~ 77 (81)
T 1iqz_A 51 IDDMMDAFEGCPTDSIKVADEPFDGDP 77 (81)
T ss_dssp HHHHHHHHHHCTTCCEEEESSCCTTCT
T ss_pred HHHHHHHHHhCCHhHEEEecCCCCCCc
Confidence 556899999999999976554454444
No 29
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=86.94 E-value=0.14 Score=38.51 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.2
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.+..||.|+++||+|||+-+.
T Consensus 38 ~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 38 ECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp TCCCCCTHHHHCTTCCEEEGG
T ss_pred cCCcHhHHHHhCCccceEecc
Confidence 477899999999999998655
No 30
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=86.85 E-value=0.14 Score=38.42 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.1
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.+..||.|+++||+|||+-+.
T Consensus 38 ~C~~Cg~C~~~CP~~ai~~~~ 58 (77)
T 1bc6_A 38 VCIDCGACEAVCPVSAIYHED 58 (77)
T ss_dssp TCCSCCSHHHHSGGGSSEETT
T ss_pred cCcCccCCHhhcCccceEecC
Confidence 467899999999999998654
No 31
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=86.63 E-value=0.2 Score=40.17 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.6
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+++||+|||+-+.
T Consensus 38 ~C~~Cg~C~~~CP~~ai~~~~ 58 (106)
T 7fd1_A 38 ECIDCALCEPECPAQAIFSED 58 (106)
T ss_dssp TCCCCCTTGGGCTTCCEEEGG
T ss_pred cCCChhhhHHhCCChhhhccc
Confidence 478899999999999998765
No 32
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=86.43 E-value=0.11 Score=48.75 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=19.6
Q ss_pred CCcCcccccccccccccCcccccc
Q 009859 32 KLMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
....|..||+|+++||+|+...+-
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~~~~~ 225 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLNPTRA 225 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCCHHHH
T ss_pred CCCcCcccchhhhhcCCCCCHHHH
Confidence 345688999999999999987543
No 33
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=85.83 E-value=0.24 Score=39.62 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.7
Q ss_pred cCcccccccccccccCcccccc
Q 009859 34 MTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
-.|..||.|+++||+|||+-+.
T Consensus 37 ~~C~~Cg~C~~~CP~~Ai~~~~ 58 (105)
T 2v2k_A 37 DECVDCGACEPVCPVEAIYYED 58 (105)
T ss_dssp TTCCCCCCSGGGCTTCCEEEGG
T ss_pred CcCcchhhHHHhCCccCEEecC
Confidence 3577899999999999998664
No 34
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=85.11 E-value=0.3 Score=37.04 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.9
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||+||+.-.
T Consensus 7 ~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 2fgo_A 7 DCINCDVCEPECPNGAISQG 26 (82)
T ss_dssp TCCCCCTTGGGCTTCCEEEC
T ss_pred CCCChhhHHHHCChhccCCC
Confidence 46779999999999999743
No 35
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=85.06 E-value=0.17 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.2
Q ss_pred CcCcccccccccccccCcccccc
Q 009859 33 LMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 33 ~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.-.|..||.|+++||+||++-..
T Consensus 95 ~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 95 MLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp TTTCCCCCHHHHHCSSSCEEECS
T ss_pred CCcCcChhChhhhCCccceEecC
Confidence 34588999999999999997653
No 36
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=83.74 E-value=0.36 Score=36.06 Aligned_cols=16 Identities=19% Similarity=0.740 Sum_probs=14.2
Q ss_pred ccccccccccCccccc
Q 009859 39 SGNVIDICPVGALTSK 54 (523)
Q Consensus 39 ~Gn~idvCPvGAlt~k 54 (523)
||.|+++||+||+.-.
T Consensus 13 C~~C~~~Cp~~ai~~~ 28 (77)
T 1bc6_A 13 DASCVEVCPVDCIHEG 28 (77)
T ss_dssp CCSSTTTCTTCCEEEC
T ss_pred cchhHHhcccccEEeC
Confidence 8999999999999753
No 37
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=83.30 E-value=0.48 Score=36.17 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=16.8
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||+||+.-.
T Consensus 7 ~C~~C~~C~~~CP~~ai~~~ 26 (85)
T 2zvs_A 7 KCINCDMCEPECPNEAISMG 26 (85)
T ss_dssp TCCCCCTTTTTCTTCCEECC
T ss_pred cCcChhHHHHHCchhccCcC
Confidence 36679999999999999753
No 38
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=83.30 E-value=0.43 Score=35.90 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.6
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||+||+.-.
T Consensus 7 ~C~~C~~C~~~CP~~ai~~~ 26 (80)
T 1rgv_A 7 DCTACDACVEECPNEAITPG 26 (80)
T ss_dssp CCCCCCTTTTTCTTCCEECC
T ss_pred CCcChhhHHHHcChhccCcC
Confidence 46679999999999999743
No 39
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=82.37 E-value=0.57 Score=32.24 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.7
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.+.-||.|+++||+||+...
T Consensus 7 ~C~~C~~C~~~CP~~ai~~~ 26 (55)
T 2fdn_A 7 ACISCGACEPECPVNAISSG 26 (55)
T ss_dssp TCCCCCTTGGGCTTCCEECC
T ss_pred cCcChhhHHHHCCccccCcC
Confidence 35678999999999999654
No 40
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=81.96 E-value=0.54 Score=35.57 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.9
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
|.-||.|+++||+||+.-.
T Consensus 8 C~~C~~C~~~CP~~ai~~~ 26 (82)
T 3eun_A 8 CINCDVCEPECPNGAISQG 26 (82)
T ss_dssp CCCCCTTGGGCTTCCEEEC
T ss_pred CcCccchHHHCChhheEcC
Confidence 5678999999999998653
No 41
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=81.24 E-value=0.32 Score=36.66 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=18.6
Q ss_pred cCccccc------ccccccccCcccccc
Q 009859 34 MTSELSG------NVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~G------n~idvCPvGAlt~k~ 55 (523)
-.|..|| .|+++||+|||+-..
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (80)
T 1rgv_A 35 TKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp TTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred hhCcCCCCcCCccHHHHhcCcccEEecC
Confidence 3577898 999999999998654
No 42
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=80.23 E-value=0.34 Score=41.72 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.3
Q ss_pred CcccccccccccccCccccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPF 56 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~ 56 (523)
.|..||.|+++||+||+.-..+
T Consensus 46 ~C~~Cg~Cv~~CP~~AI~~~~~ 67 (150)
T 1jnr_B 46 MCWECYSCVKMCPQGAIDVRGY 67 (150)
T ss_dssp GCCCCCHHHHHCTTCCEEECCC
T ss_pred cCcCHhHHHHhCCccceEecCc
Confidence 5788999999999999987764
No 43
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=79.64 E-value=0.38 Score=36.39 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.7
Q ss_pred Cccccc------ccccccccCcccccc
Q 009859 35 TSELSG------NVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~G------n~idvCPvGAlt~k~ 55 (523)
.|..|| .|+++||+|||+-..
T Consensus 36 ~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 36 LCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp TCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred hCccCCCcCCCCHhHhhCCcccEEccC
Confidence 467788 999999999998654
No 44
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=78.91 E-value=0.38 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=18.1
Q ss_pred Cccccc------ccccccccCcccccc
Q 009859 35 TSELSG------NVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~G------n~idvCPvGAlt~k~ 55 (523)
.|..|| .|+++||+|||+-..
T Consensus 36 ~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 3eun_A 36 LCTECVGHYETSQCVEVCPVDAIIKDP 62 (82)
T ss_dssp GCCTTTTTCSSCHHHHHCTTCCEEECG
T ss_pred hcCCCCCCCCccHHHHhCCccceEEcC
Confidence 477898 999999999998664
No 45
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=78.55 E-value=0.31 Score=36.51 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.3
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||.|+++||++|+.-.+
T Consensus 9 ~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 9 TCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp TCCCCCHHHHHCTTCCCEEEE
T ss_pred cCcChhHHHHHCCcccccccc
Confidence 367799999999999997543
No 46
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=78.20 E-value=0.46 Score=35.55 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=14.3
Q ss_pred ccccccccccCccccc
Q 009859 39 SGNVIDICPVGALTSK 54 (523)
Q Consensus 39 ~Gn~idvCPvGAlt~k 54 (523)
||.|+++||+||+.-.
T Consensus 13 C~~C~~~CP~~ai~~~ 28 (78)
T 1h98_A 13 DQSCVEVCPVECIYDG 28 (78)
T ss_dssp CCHHHHHCTTCCEEEC
T ss_pred cChhhhhcCccceEcC
Confidence 8999999999999754
No 47
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=77.09 E-value=3.8 Score=43.06 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di~ 213 (523)
+++++.+++.|++.+ +..++.|+... .....+.+|++.+|.+.+.+...... ....+|.....+.. ..-++
T Consensus 188 ~~~i~~~~~~l~~A~--rpvIl~G~g~~-~a~~~l~~lae~~~~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~ 264 (549)
T 3eya_A 188 EEELRKLAQLLRYSS--NIALMCGSGCA-GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMM 264 (549)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEECGGGT-TCHHHHHHHHHHHTCCEEECGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCCch-HHHHHHHHHHHHhCCCEEECCccCcCCCCCCcccccCCCCCCCHHHHHHHH
Confidence 688999999998764 56666664332 22345789999999887654322110 11112211111211 13467
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||.+|+++.... .. ..++++|.||+..
T Consensus 265 ~aDlvl~iG~~~~~~~---------~~-~~~~~~i~id~d~ 295 (549)
T 3eya_A 265 NADTLVLLGTQFPYRA---------FY-PTDAKIIQIDINP 295 (549)
T ss_dssp HCSEEEEESCCCCCGG---------GS-CSSSEEEEEESCG
T ss_pred hCCEEEEECCCCCccc---------cC-CCCCeEEEEeCCH
Confidence 9999999999864321 11 2578999998754
No 48
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=75.64 E-value=0.57 Score=41.07 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=19.9
Q ss_pred CcccccccccccccCcccccccc
Q 009859 35 TSELSGNVIDICPVGALTSKPFA 57 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~~~ 57 (523)
.|..||.|+++||+||++-..+.
T Consensus 45 ~C~~Cg~Cv~~CP~~Ai~~~~~~ 67 (166)
T 3gyx_B 45 ACWECYSCIKICPQGAITARPYA 67 (166)
T ss_dssp GCCCCCHHHHHCSSCCEEECCCT
T ss_pred cCcccChHhHhCCccceEEeccc
Confidence 58889999999999999877653
No 49
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=74.73 E-value=5.9 Score=41.93 Aligned_cols=108 Identities=9% Similarity=0.094 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCC-c---c-chhhhhhcCcccC--CCcccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGT-G---A-QSNADLRSGYIMN--TSISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~-~---~-~~~~~~~~~~~~~--~~~~di 212 (523)
+++++.+++.|++ + +..++.|+.........+.+|++.+|.+.+..... . + .....++...... .....+
T Consensus 211 ~~~i~~~~~~L~~-~--rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~ 287 (578)
T 3lq1_A 211 DSSIQKMVTECTG-K--KGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDK 287 (578)
T ss_dssp HHHHHHHHHHTTT-S--CEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHH
T ss_pred hHHHHHHHHHhcc-C--CeEEEECCCCChHHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCcccccc
Confidence 5788889998887 3 55566664332122355788999999887753211 1 0 0011111100000 112346
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
+++|+||.+|..+.... .....++ ..++++|.||+...
T Consensus 288 ~~aDlvl~~G~~~~~~~--~~~~~~~---~~~~~~i~id~d~~ 325 (578)
T 3lq1_A 288 LTPEVVIRFGSMPVSKP--LKNWLEQ---LSDIRFYVVDPGAA 325 (578)
T ss_dssp TCCSEEEEESSCCSCHH--HHHHHHH---CCSSEEEEECTTCC
T ss_pred CCCCEEEEeCCcccchh--HHHHHhc---CCCCEEEEECCCCC
Confidence 79999999998764322 1112221 25789999998643
No 50
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=73.74 E-value=0.8 Score=36.56 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=16.9
Q ss_pred Cccccc--ccccccccCcccccc
Q 009859 35 TSELSG--NVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~G--n~idvCPvGAlt~k~ 55 (523)
.|.-|| .|+++||+||++-..
T Consensus 7 ~C~~C~~~~C~~~CP~~ai~~~~ 29 (106)
T 7fd1_A 7 NCIKCKYTDCVEVCPVDCFYEGP 29 (106)
T ss_dssp GGTTTCCCHHHHHCTTCCEEECS
T ss_pred ccCCccCcHHHHHcCccceEcCC
Confidence 356788 999999999987543
No 51
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=73.59 E-value=1.2 Score=40.11 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.5
Q ss_pred Ccccccc--cccccccCccccc
Q 009859 35 TSELSGN--VIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn--~idvCPvGAlt~k 54 (523)
.|..||| |+++||+||+...
T Consensus 57 ~C~~C~~p~C~~~CP~gAi~~~ 78 (195)
T 2vpz_B 57 QCLHCENPPCVPVCPTGASYQT 78 (195)
T ss_dssp ECCCCSSCTTTTTCSSSCEEEC
T ss_pred cCcCccCcHHHHhcCCCceecc
Confidence 4667895 9999999999754
No 52
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=72.41 E-value=1.4 Score=38.78 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=17.1
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|.-||.|+++||++|+.-.
T Consensus 52 ~Ci~C~~C~~~CP~~ai~~~ 71 (182)
T 3i9v_9 52 KCIGCSLCAAACPAYAIYVE 71 (182)
T ss_dssp SCCCCCHHHHHCTTCCEEEE
T ss_pred cCcccccchhhCCcccEEee
Confidence 47789999999999999643
No 53
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=72.21 E-value=5 Score=42.35 Aligned_cols=107 Identities=20% Similarity=0.136 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hh-hhhhcCcccCCC--ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SN-ADLRSGYIMNTS--ISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~-~~~~~~~~~~~~--~~d 211 (523)
+++++.+++.|++.+ +..++.|+.. ..+....+.+|++.+|.+.+.+...... .. ..+|.....+.. ..-
T Consensus 194 ~~~i~~~~~~l~~a~--rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~ 271 (566)
T 1ozh_A 194 DDAIDQVAKLIAQAK--NPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRL 271 (566)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHH
T ss_pred HHHHHHHHHHHHcCC--CeEEEECCCcccccHHHHHHHHHHHHCCCEEEccccCCcCCCCChHhhcCCCcccCCHHHHHH
Confidence 577888999998864 5666666532 2233456889999999887644322111 11 112221122221 134
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
++++|+||.+|+++....+..+ ..++++++.||+...
T Consensus 272 l~~aDlvl~lG~~~~~~~~~~~-------~~~~~~~i~id~d~~ 308 (566)
T 1ozh_A 272 LQLADLVICIGYSPVEYEPAMW-------NSGNATLVHIDVLPA 308 (566)
T ss_dssp HHHCSEEEEESCCGGGSCGGGT-------CCSCSEEEEEESSCC
T ss_pred HHhCCEEEEECCCCCcCCcccc-------CCCCCcEEEEeCCHH
Confidence 6789999999996433221111 113689999998654
No 54
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=72.16 E-value=1.4 Score=45.67 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=7.5
Q ss_pred cccccccccccccCcc
Q 009859 36 SELSGNVIDICPVGAL 51 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAl 51 (523)
|..||.|+++||+||+
T Consensus 217 CigCg~Cv~~CP~~AI 232 (512)
T 1q16_B 217 CRGWRMCITGCPYKKI 232 (512)
T ss_dssp CCCCCCHHHHCTTCCE
T ss_pred CCCchHHHhhCCccce
Confidence 3344444444444444
No 55
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=71.85 E-value=0.76 Score=52.50 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=15.3
Q ss_pred Cccccccccccccc---Ccccccc
Q 009859 35 TSELSGNVIDICPV---GALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPv---GAlt~k~ 55 (523)
.|.-||.|+++||+ +|+.-..
T Consensus 952 ~C~~Cg~C~~~CP~~~~~ai~~~~ 975 (1025)
T 1gte_A 952 MCINCGKCYMTCNDSGYQAIQFDP 975 (1025)
T ss_dssp TCCCCCHHHHHHHHHSCSCEEECT
T ss_pred cCcccCHHHHhcCccccCCEEEeC
Confidence 46678888888886 8876443
No 56
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=71.60 E-value=4.1 Score=35.57 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=29.8
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.+|++|+|+.|.+.... .....+..|+..+|.
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~----~a~~~l~~lae~~~i 63 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDP----ELLDRVVKISKAANI 63 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCH----HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCEEEECCCccch----hHHHHHHHHHHHhCC
Confidence 4567889999999999999987653 344556667777654
No 57
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=71.42 E-value=0.74 Score=35.06 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=17.8
Q ss_pred Cccccc------cccccccc-Ccccccc
Q 009859 35 TSELSG------NVIDICPV-GALTSKP 55 (523)
Q Consensus 35 ~~~~~G------n~idvCPv-GAlt~k~ 55 (523)
.|..|| .|+++||+ |||+-.+
T Consensus 36 ~C~~C~~~~~~~~C~~~CP~~~Ai~~~~ 63 (85)
T 2zvs_A 36 KCTECVGHYETPTCQKVCPIPNTIVKDP 63 (85)
T ss_dssp GCCTTTTTCSSCHHHHHCSSCCEEECTT
T ss_pred hccCCCCcCCccHhhHhCcCCCCEEecC
Confidence 577888 99999999 9997654
No 58
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=70.26 E-value=0.94 Score=45.49 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.6
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.|-.||+|+.+||.+||..
T Consensus 257 ~Ci~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 257 RCMYCGNCYTMCPALPLSD 275 (386)
T ss_dssp TCCCCCHHHHHCTTCCCCC
T ss_pred cCCccccHHHhCcHhhCcC
Confidence 4789999999999999953
No 59
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=70.14 E-value=0.92 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.3
Q ss_pred cccc--cccccccccCccccc
Q 009859 36 SELS--GNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~--Gn~idvCPvGAlt~k 54 (523)
|.-| |.|+++||+||+.-.
T Consensus 8 C~~C~c~~C~~~CP~~ai~~~ 28 (105)
T 2v2k_A 8 CVDVKDKACIEECPVDCIYEG 28 (105)
T ss_dssp GTTTCCCHHHHHCTTCCEEEC
T ss_pred CCCCCcChhhhhcCccccCcC
Confidence 4445 999999999999743
No 60
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=69.97 E-value=1 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.2
Q ss_pred cCcccccccccccccCcccc-cc
Q 009859 34 MTSELSGNVIDICPVGALTS-KP 55 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~-k~ 55 (523)
-.|..||.|+++||+||++. +.
T Consensus 64 ~~C~~Cg~C~~~CP~~Ai~~~~~ 86 (421)
T 1hfe_L 64 EACINCGQCLTHCPENAIYEAQS 86 (421)
T ss_dssp GGCCCCCTTGGGCTTCCEEESCC
T ss_pred hhCCchhhHHHhhCcCCcccccc
Confidence 35889999999999999987 54
No 61
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=69.26 E-value=1.2 Score=45.14 Aligned_cols=19 Identities=26% Similarity=0.765 Sum_probs=15.9
Q ss_pred cccccccccccccCccccc
Q 009859 36 SELSGNVIDICPVGALTSK 54 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAlt~k 54 (523)
++.|+.|+++||++|+.-.
T Consensus 257 c~i~~~cv~~CPt~Ai~~~ 275 (418)
T 3mm5_A 257 MDIENEVVKLCPTGAIKWD 275 (418)
T ss_dssp SCHHHHTGGGCTTCCEEEC
T ss_pred cccCccccccCCccccccC
Confidence 4567999999999999754
No 62
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=68.23 E-value=1.1 Score=44.52 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHh
Q 009859 138 NWRDALAVVAEVMLQ 152 (523)
Q Consensus 138 sWdeAl~~ia~~L~~ 152 (523)
.|+|+++.+.+.+.-
T Consensus 295 ~~~ev~~~v~~i~~~ 309 (366)
T 3mm5_B 295 RWPTLVKYVKQILEA 309 (366)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 478888877666553
No 63
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=67.79 E-value=1.9 Score=49.90 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.5
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|-.||.|+.+||.+|+...
T Consensus 687 kCi~Cg~Cv~vCP~~AI~~~ 706 (1231)
T 2c42_A 687 NCIQCNQCAFVCPHSAILPV 706 (1231)
T ss_dssp TCCCCCHHHHHCSSCCEEEE
T ss_pred cCCchhhHHHhCCccccccc
Confidence 57889999999999999753
No 64
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=66.16 E-value=1.2 Score=35.13 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=9.5
Q ss_pred ccccccccccCccc
Q 009859 39 SGNVIDICPVGALT 52 (523)
Q Consensus 39 ~Gn~idvCPvGAlt 52 (523)
||.|+++||+|||+
T Consensus 86 Cg~C~~~CP~~Ai~ 99 (103)
T 1xer_A 86 CMACVNVCPVAAID 99 (103)
T ss_dssp CCHHHHHCTTCCEE
T ss_pred hhhHHHhccccceE
Confidence 56677777777765
No 65
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=65.61 E-value=6.9 Score=42.31 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC--cHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcCcccCCC--ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS--DAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNTS--ISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~--~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~d 211 (523)
+++++.+++.|++.+ +..++.|+.. +.+....+.+|++.+|.+.+.+......+ ...+|....++.. ..-
T Consensus 276 ~~~i~~a~~~L~~Ak--rPvIl~G~g~~~~~~~~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~ 353 (677)
T 1t9b_A 276 MQSINKAADLINLAK--KPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLA 353 (677)
T ss_dssp HHHHHHHHHHHHTCS--SEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CeEEEECcccccCchhHHHHHHHHHHhCCCeeeccccCccCCCCCccccCcCCccCcHHHHHH
Confidence 578899999998764 5666666432 22234568999999999876542211111 1111211112211 133
Q ss_pred cccCCEEEEEcCCCCcchh----hHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAA----MVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p----~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||.+|+.+..... .+....+.+..+....+|.||...
T Consensus 354 l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~ 400 (677)
T 1t9b_A 354 VQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSP 400 (677)
T ss_dssp HHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCG
T ss_pred HhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCH
Confidence 6799999999997653211 011111212223444588877643
No 66
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=63.74 E-value=8.6 Score=40.99 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccch----hhhhhcCcccCCC---ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNTS---ISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~d 211 (523)
+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+........+ ...+|.....+.. ..-
T Consensus 213 ~~~i~~~~~~l~~a~--rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~ 290 (616)
T 2pan_A 213 RMQIEKAVEMLIQAE--RPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNAT 290 (616)
T ss_dssp HHHHHHHHHHHHTCS--SEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CeEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCccccCCHHHHHHH
Confidence 678899999998763 56666664321 1223457889999998876443321111 1112211112211 133
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||.+|+.+.... ...+... . .+.+++.||...
T Consensus 291 l~~aDlvl~iG~~~~~~~---~~~~~~~-~-~~~~~i~id~d~ 328 (616)
T 2pan_A 291 LLASDMVFGIGNRFANRH---TGSVEKY-T-EGRKIVHIDIEP 328 (616)
T ss_dssp HHHCSEEEEESCCCCHHH---HSSHHHH-H-TTCEEEEEESCG
T ss_pred HHhCCEEEEECCCCcccc---cCccccc-C-CCCeEEEEeCCH
Confidence 689999999998764311 1122222 2 467999998754
No 67
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=62.99 E-value=6.6 Score=41.80 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di~ 213 (523)
+++++.+++.|++.+ +..++.|+... .....+.+|++.+|.+.+.+...... ....+|.....+.. ..-++
T Consensus 199 ~~~i~~~~~~l~~A~--rPvIl~G~g~~-~a~~~l~~lae~~~~PV~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~ 275 (603)
T 4feg_A 199 VQAVTRLTQTLLAAE--RPLIYYGIGAR-KAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALA 275 (603)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECGGGT-TCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CeEEEECCCch-hHHHHHHHHHHHHCCCEEEcCccccCCCCCChhhcccCcccCcHHHHHHHH
Confidence 578899999998764 56666664332 23456889999999887654322111 11112221112211 23468
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
++|+||.+|+.+.... . ++. . ..++++|.||+...
T Consensus 276 ~aDlvl~iG~~~~~~~-~----~~~-~-~~~~~~i~id~d~~ 310 (603)
T 4feg_A 276 QADVVLFVGNNYPFAE-V----SKA-F-KNTRYFLQIDIDPA 310 (603)
T ss_dssp HCSEEEEESCCCTTTT-T----TTT-T-TTCSEEEEEESCGG
T ss_pred hCCEEEEECCCCCccc-c----ccc-C-CCCCeEEEEeCCHH
Confidence 9999999999875321 1 111 1 24789999987543
No 68
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=62.58 E-value=7.3 Score=41.13 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcC-----cccCC
Q 009859 138 NWRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSG-----YIMNT 207 (523)
Q Consensus 138 sWdeAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~-----~~~~~ 207 (523)
.-+++++.+++.|++.+ +..++.|... ..+....+.+|++.+|.+.+........ ....+|.. ...+.
T Consensus 201 ~~~~~v~~~~~~l~~a~--rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~ 278 (573)
T 2iht_A 201 GWQKAADQAAALLAEAK--HPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNF 278 (573)
T ss_dssp THHHHHHHHHHHHHHCS--SEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTS
T ss_pred CCHHHHHHHHHHHHcCC--CeEEEECCCccccCHHHHHHHHHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCC
Confidence 44688999999998864 6666776432 1122346889999999887654332111 11111211 11121
Q ss_pred C--ccccccCCEEEEEcCC-CCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 208 S--ISGLEKADCFLLVGTQ-PRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 208 ~--~~di~~ad~il~~G~n-~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
. ..-++++|+||.+|+. +..-.+. .+. . ..+.+++.||+...
T Consensus 279 ~~~~~~l~~aDlvl~iG~~~~~~~~~~---~~~--~-~~~~~~i~id~d~~ 323 (573)
T 2iht_A 279 PALQTMFAPVDLVLTVGYDYAEDLRPS---MWQ--K-GIEKKTVRISPTVN 323 (573)
T ss_dssp CHHHHHHTTCCEEEEETCCGGGCCCHH---HHC--C-SSCCEEEEEESSCC
T ss_pred HHHHHHHhhCCEEEEECCCcccccccc---ccC--C-CCCCeEEEEeCCHH
Confidence 1 1336799999999998 5333321 111 1 14789999997554
No 69
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=62.56 E-value=18 Score=38.31 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc----cc-hhhhhhcCc-ccCC-Ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG----AQ-SNADLRSGY-IMNT-SISGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~----~~-~~~~~~~~~-~~~~-~~~di 212 (523)
+++++.+++.|++.+ +..++.|+....+....+.+|++.+|.+.+...... +. ....++... ..+. ...++
T Consensus 230 ~~~i~~~~~~l~~A~--rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~ 307 (604)
T 2x7j_A 230 RESLSDVAEMLAEAE--KGMIVCGELHSDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRK 307 (604)
T ss_dssp TGGGHHHHHHHHHCS--SEEEEECCCCCHHHHHHHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHH
T ss_pred hhhHHHHHHHHhhcC--CeEEEECCCCcHHHHHHHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhh
Confidence 366788888888764 666677655444455678999999998876443211 10 101111100 1111 11223
Q ss_pred ccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 213 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 213 ~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
-++|+||.+|+.+.... ...... +..+.+++.||+...
T Consensus 308 ~~~Dlvl~iG~~~~~~~--~~~~~~---~~~~~~~i~id~d~~ 345 (604)
T 2x7j_A 308 LRPDVVIRFGPMPVSKP--VFLWLK---DDPTIQQIVIDEDGG 345 (604)
T ss_dssp HCCSEEEEESSCCSCHH--HHHHHH---HCTTSEEEEECTTCC
T ss_pred cCCCEEEEECCcCccHH--HHHHHh---hCCCCeEEEECCCCC
Confidence 24899999999874432 111121 112679999998654
No 70
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=62.30 E-value=0.24 Score=54.72 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=30.4
Q ss_pred Ceeeeccccccc-ceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccc
Q 009859 1 MCVRFATEVAGV-QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 1 RCvRf~~e~~g~-~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
+|++.|-..+.. ..+....+|....+ ....-.|..||+|+.+||+|+.+.+.
T Consensus 422 ~C~~~CP~~~~~~~il~~~~~G~~~~~---~~~~~~Ci~Cg~C~~vCP~ga~~~~~ 474 (807)
T 3cf4_A 422 ACLLACPEEIDIPEAMGFAKKGDFSYF---EEIHDTCIGCRRCEQVCKKEIPILNV 474 (807)
T ss_dssp HHHHHCTTCCCHHHHHHHHHTTCTHHH---HHHHHHCCCCCHHHHHCTTCCCHHHH
T ss_pred chhhhCCCCCchHHHHHHHHcCChhhh---hhchhhccchhhHHHhCCCCCChHHH
Confidence 467777665533 22333345532211 11223477899999999999988764
No 71
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=62.17 E-value=3.9 Score=43.45 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--ccccc
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGLE 213 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di~ 213 (523)
++++.+++.|++.+ +..++.|+.. ..+....+.+|++.+|.+.+........ .....|.....+.. ..-++
T Consensus 193 ~~v~~~~~~l~~a~--rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~ 270 (589)
T 2pgn_A 193 EDVREAAAQLVAAK--NPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMA 270 (589)
T ss_dssp HHHHHHHHHHHHCS--SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CeEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCChhhcCCccccCCHHHHHHHh
Confidence 77889999998864 6666777432 1122356889999999887654332211 11112221122211 13467
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||.+|+.+..-... + .. . ..+++++.||+..
T Consensus 271 ~aDlvl~iG~~~~~~~~~-~---~~-~-~~~~~~i~id~d~ 305 (589)
T 2pgn_A 271 AADFVLVLGSRLSDWGIA-Q---GY-I-TKMPKFVHVDTDP 305 (589)
T ss_dssp HCSEEEEESCCCCTTTTT-T---TT-T-CCCCSEEEEESCG
T ss_pred hCCEEEEECCCccccccc-c---cc-c-CCCCeEEEEeCCH
Confidence 899999999977543321 1 11 1 1467999998754
No 72
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=61.96 E-value=29 Score=30.86 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHH-----HcCCCccccCCCcc---chhhhhhcCcccCCCcc
Q 009859 139 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLN-----RMGSNNVWCEGTGA---QSNADLRSGYIMNTSIS 210 (523)
Q Consensus 139 WdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~-----~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 210 (523)
.++|.+.+++.|++ .++|.+++.+.+..-..++..+|.. ++|-+.+....... +...+++....+...+.
T Consensus 32 i~~a~~~i~~al~~--~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~ 109 (201)
T 3trj_A 32 IAQAAKAMVSCLEN--GGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVA 109 (201)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHH
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHH
Confidence 34555555555554 3578777665544434455555553 23433322221110 01111221111100011
Q ss_pred -ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 211 -GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 211 -di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
-+..-|++|++...- +.+-+...++.+ +++|++++.|-.
T Consensus 110 ~~~~~~Dvvi~iS~SG--~t~~~~~~~~~a-k~~g~~vi~iT~ 149 (201)
T 3trj_A 110 ALGNEDDILLVITTSG--DSENILSAVEEA-HDLEMKVIALTG 149 (201)
T ss_dssp HHCCTTCEEEEECSSS--CCHHHHHHHHHH-HHTTCEEEEEEE
T ss_pred hhCCCCCEEEEEeCCC--CCHHHHHHHHHH-HHCCCcEEEEEC
Confidence 145678888885432 233344445555 458999999854
No 73
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=61.63 E-value=1.8 Score=40.34 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=17.6
Q ss_pred CCcCcccccccccccccCcccc
Q 009859 32 KLMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt~ 53 (523)
....|.+||+|+++||+|.-..
T Consensus 200 ~~~~C~~Cg~C~~vCP~gi~~~ 221 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKHVDPA 221 (243)
T ss_dssp TGGGCCCCCHHHHHCTTCCCHH
T ss_pred CcccCcccCCcchhCCCCCCHH
Confidence 3456889999999999996543
No 74
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=60.75 E-value=1.9 Score=42.58 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=16.6
Q ss_pred Cccccc--ccccccccCccccc
Q 009859 35 TSELSG--NVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~G--n~idvCPvGAlt~k 54 (523)
.|..|| .|+.+||+||+.-.
T Consensus 150 ~C~~C~~~~Cv~~CP~gAi~~~ 171 (352)
T 2ivf_B 150 MCNHCTNPACLAACPTGAIYKR 171 (352)
T ss_dssp CCCCCSSCHHHHHCTTCCEEEC
T ss_pred CCcCcCCccccccCCCCceeec
Confidence 477899 69999999999643
No 75
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=59.75 E-value=24 Score=30.83 Aligned_cols=114 Identities=17% Similarity=0.083 Sum_probs=58.3
Q ss_pred eeEcCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc---------c---chhh-hhh
Q 009859 134 FKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---------A---QSNA-DLR 200 (523)
Q Consensus 134 ~~~isWdeAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~---------~---~~~~-~~~ 200 (523)
-+-+|-++| +++.|++. ++-.++.|+-...+....+.+|++. |.|.+.+-... + .++. ..+
T Consensus 19 a~~~~i~~a---~a~lI~~A--kRPvIl~Ggv~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g 92 (174)
T 1ytl_A 19 ATLLEKGKP---VANMIKKA--KRPLLIVGPDMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELT 92 (174)
T ss_dssp CEECCCHHH---HHHHHHHC--SSEEEEECSCCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHH
T ss_pred ceeccHHHH---HHHHHHcC--CCCEEEECCCCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHH
Confidence 356675555 04555554 3555666653334555667899998 88876542211 1 0100 000
Q ss_pred cCc--ccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 201 SGY--IMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 201 ~~~--~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
... ..+....-+++||+||.+|+........ ...+... ..++|++.||-.+..
T Consensus 93 ~~~~~~~~~~~~~~~~aDLvI~iG~rf~~~~~~-t~~~~~f--ap~akii~Idk~~~~ 147 (174)
T 1ytl_A 93 QFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQM-LAAIKNF--APHIRALAIDRYYHP 147 (174)
T ss_dssp HHHHSTTCCCTTSSCCCSEEEEESCCHHHHHHH-HHHHHHH--CTTCEEEECSSSCCT
T ss_pred HHhhhhhhhhhcccCCCCEEEEECCcCCccccc-ccccccc--CCCCeEEEeCCCcCC
Confidence 000 0001122248999999999875421111 1122222 147899999865544
No 76
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=58.80 E-value=53 Score=28.68 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=24.8
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
.+..-|++|++...-. .+-....++.+ +++|++++.|-..
T Consensus 110 ~~~~~DvvI~iS~SG~--t~~~i~~~~~a-k~~g~~vI~IT~~ 149 (199)
T 1x92_A 110 LGQPGDVLLAISTSGN--SANVIQAIQAA-HDREMLVVALTGR 149 (199)
T ss_dssp HCCTTCEEEEECSSSC--CHHHHHHHHHH-HHTTCEEEEEECT
T ss_pred CCCCCCEEEEEeCCCC--CHHHHHHHHHH-HHCCCEEEEEECC
Confidence 3566788888765432 23333445554 4699999998543
No 77
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=58.71 E-value=1.2 Score=40.75 Aligned_cols=22 Identities=5% Similarity=-0.167 Sum_probs=18.6
Q ss_pred CcCcccccc--cccccc---cCccccc
Q 009859 33 LMTSELSGN--VIDICP---VGALTSK 54 (523)
Q Consensus 33 ~~~~~~~Gn--~idvCP---vGAlt~k 54 (523)
+..|..||| |+++|| +|||+..
T Consensus 69 ~~~C~~C~~p~C~~~CP~~~~gAi~~~ 95 (214)
T 1h0h_B 69 PDQCRHCIAPPCKATADMEDESAIIHD 95 (214)
T ss_dssp EECCCCCSSCHHHHHHTTTCTTSEEEC
T ss_pred CCcCcCcCCchhhccCCccccccEEec
Confidence 346789999 999999 9999765
No 78
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=58.62 E-value=11 Score=40.04 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCC--Cccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di~ 213 (523)
+++++.+++.|++.+ +..++.|+...... ..+.+|++.+|.+.+........ ....+|.....+. ...-++
T Consensus 201 ~~~i~~~~~~l~~a~--rpvIl~G~g~~~~~-~~l~~lae~~~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~ 277 (590)
T 1ybh_A 201 DSHLEQIVRLISESK--KPVLYVGGGCLNSS-DELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVE 277 (590)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECGGGTTCH-HHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CcEEEECcccccCH-HHHHHHHHHhCCCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHH
Confidence 578899999998864 66666664322122 56889999999887654322111 1111222111121 123467
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
++|+||.+|+.+.... ...+.. . ..+.+++.||.....
T Consensus 278 ~aDlvl~iG~~~~~~~---~~~~~~-~-~~~~~~i~id~d~~~ 315 (590)
T 1ybh_A 278 HSDLLLAFGVRFDDRV---TGKLEA-F-ASRAKIVHIDIDSAE 315 (590)
T ss_dssp HCSEEEEESCCCCHHH---HSSGGG-T-TTTSEEEEEESCTTT
T ss_pred hCCEEEEEcCCCCccc---cCcccc-c-CCCCeEEEEECCHHH
Confidence 8999999998763311 111111 1 146799999886543
No 79
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=57.64 E-value=53 Score=28.56 Aligned_cols=108 Identities=9% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHH-----HcCCCccccCCCccchhhhhhcCcccCCC-----c
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLN-----RMGSNNVWCEGTGAQSNADLRSGYIMNTS-----I 209 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~-----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 209 (523)
+++++.+++.|++. ++|.+++.+.+..-..++..+|.. .+|-+........ .....+.....+... .
T Consensus 28 ~~~~~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~-~~~~a~~~d~~~~~~~~~~~~ 104 (196)
T 2yva_A 28 SRAAMTLVQSLLNG--NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDN-VVLTAIANDRLHDEVYAKQVR 104 (196)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCH-HHHHHHTTSTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCch-HHHHHHhcCCCHHHHHHHHHH
Confidence 47888888888875 477766655433323334444442 2332222111100 000000000000000 1
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
..+..-|++|++...- + .+-....++.+ +++|++++.|-..
T Consensus 105 ~~~~~~DvvI~iS~SG-~-t~~~i~~~~~a-k~~g~~vI~IT~~ 145 (196)
T 2yva_A 105 ALGHAGDVLLAISTRG-N-SRDIVKAVEAA-VTRDMTIVALTGY 145 (196)
T ss_dssp HHCCTTCEEEEECSSS-C-CHHHHHHHHHH-HHTTCEEEEEECT
T ss_pred hcCCCCCEEEEEeCCC-C-CHHHHHHHHHH-HHCCCEEEEEeCC
Confidence 3355678877776443 2 23333445554 4699999998543
No 80
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=55.85 E-value=9.4 Score=36.91 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=32.0
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchh
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQ 261 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a 261 (523)
..+++||++|++|+..... |... ..+.+ +++|.+|+.|++..+..-..+
T Consensus 202 ~~~~~aDllLViGTSL~V~-Paa~-l~~~a-~~~G~~vviIN~~~t~~d~~a 250 (318)
T 3k35_A 202 EASRNADLSITLGTSLQIR-PSGN-LPLAT-KRRGGRLVIVNLQPTKHDRHA 250 (318)
T ss_dssp HHHHTCSEEEEESCCCCST-TGGG-HHHHH-HHTTCEEEEECSSCCTTGGGC
T ss_pred HHHhcCCEEEEEccCCCch-hhhh-hHHHH-HhcCCEEEEECCCCCCCCCcc
Confidence 3467899999999986553 3211 12233 348999999998766543333
No 81
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=55.24 E-value=8.1 Score=42.01 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=37.1
Q ss_pred ccCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCC
Q 009859 353 IESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
-.+.+.++++|+||... ++.++..-+|++|+..|+|+..||..||...
T Consensus 164 i~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~irP 220 (715)
T 2iv2_X 164 IDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALKN 220 (715)
T ss_dssp GGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECCCT
T ss_pred HhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEeccCC
Confidence 35689999999998531 1222345688999999999999999999864
No 82
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=55.16 E-value=2 Score=44.47 Aligned_cols=22 Identities=5% Similarity=-0.191 Sum_probs=18.1
Q ss_pred cCccccc---------ccccccccCcccccc
Q 009859 34 MTSELSG---------NVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~G---------n~idvCPvGAlt~k~ 55 (523)
-.|.+|| .|+++||++|++-..
T Consensus 242 ~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~ 272 (512)
T 1q16_B 242 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 (512)
T ss_dssp EECCTTHHHHTTTCCCHHHHTCTTCCEEEEE
T ss_pred ccCcCCCchhhcCCCCceEeeCchhhhhccc
Confidence 3578899 999999999987554
No 83
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=54.90 E-value=13 Score=35.45 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=31.0
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 256 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~ 256 (523)
.+++++|++|++|+.... .|. +...+.+ +++|++++.|++..+.
T Consensus 212 ~~~~~aDllLviGTSl~V-~Pa-a~l~~~a-~~~g~~~v~IN~~~t~ 255 (290)
T 3u31_A 212 EEIAKCDLLLVIGTSSTV-STA-TNLCHFA-CKKKKKIVEINISKTY 255 (290)
T ss_dssp HHHHHCSEEEEESCCSCS-HHH-HHHHHHH-HHTTCCEEEEESSCCT
T ss_pred HHHhcCCEEEEECcCCcc-hhH-HHHHHHH-HHcCCEEEEECCCCCC
Confidence 356789999999997655 342 2223333 4589999999987655
No 84
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=54.84 E-value=13 Score=34.27 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=30.4
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 257 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t 257 (523)
.++++|++|++|+.... .|. .++-..++++|++++.|++..+..
T Consensus 164 ~~~~adl~lviGTSl~V-~Pa--~~l~~~a~~~g~~~i~iN~~~t~~ 207 (235)
T 1s5p_A 164 ALSMADIFIAIGTSGHV-YPA--AGFVHEAKLHGAHTVELNLEPSQV 207 (235)
T ss_dssp HHHHCSEEEEESCCTTE-ETG--GGHHHHHHHTTCEEEEEESSSCC-
T ss_pred HHhcCCEEEEECcCCch-hhH--HHHHHHHHHcCCeEEEEECCCCCC
Confidence 45689999999997654 443 223233344899999999977654
No 85
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=54.77 E-value=93 Score=26.67 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+. ++|.+++.+....-..++..+| ..+|-+...... . ....+..-|++|+
T Consensus 25 ~~i~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~d~vI~ 85 (186)
T 1m3s_A 25 EEADQLADHILSS--HQIFTAGAGRSGLMAKSFAMRL-MHMGFNAHIVGE--------I--------LTPPLAEGDLVII 85 (186)
T ss_dssp HHHHHHHHHHHHC--SCEEEECSHHHHHHHHHHHHHH-HHTTCCEEETTS--------T--------TCCCCCTTCEEEE
T ss_pred HHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHHHHH-HhcCCeEEEeCc--------c--------cccCCCCCCEEEE
Confidence 5778888888775 3676655443322222333333 445643221110 0 1234556688777
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+...- ++ +-....++.+ +++|++++.|-..
T Consensus 86 iS~sG-~t-~~~~~~~~~a-k~~g~~vi~IT~~ 115 (186)
T 1m3s_A 86 GSGSG-ET-KSLIHTAAKA-KSLHGIVAALTIN 115 (186)
T ss_dssp ECSSS-CC-HHHHHHHHHH-HHTTCEEEEEESC
T ss_pred EcCCC-Cc-HHHHHHHHHH-HHCCCEEEEEECC
Confidence 76533 22 3333344554 4599999999654
No 86
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=54.71 E-value=2.5 Score=36.16 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.6
Q ss_pred Cccccc-----ccccccccCccccc
Q 009859 35 TSELSG-----NVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~G-----n~idvCPvGAlt~k 54 (523)
.|.-|| .|+++||+||+.-.
T Consensus 9 ~C~~C~~~~~~~C~~~CP~~ai~~~ 33 (150)
T 1jnr_B 9 KCDGCKALERTACEYICPNDLMTLD 33 (150)
T ss_dssp TCCSCCSSSSCHHHHHCTTSCEEEE
T ss_pred cCCCCCCcccccchhhcCccCeEEe
Confidence 366799 99999999998643
No 87
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=53.60 E-value=2.8 Score=39.89 Aligned_cols=16 Identities=25% Similarity=0.708 Sum_probs=11.6
Q ss_pred cccccccccccccCcc
Q 009859 36 SELSGNVIDICPVGAL 51 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAl 51 (523)
|.-||.|+++||.||+
T Consensus 99 CigC~~C~~~CP~~Ai 114 (274)
T 1ti6_B 99 AKGKKELLDTCPYGVM 114 (274)
T ss_dssp TTTCGGGGGGCSSCCC
T ss_pred ccchHHHHhhCccCCe
Confidence 4567777777777776
No 88
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=53.51 E-value=3.3 Score=39.78 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=16.0
Q ss_pred Cccccc--cccccccc-Ccccc
Q 009859 35 TSELSG--NVIDICPV-GALTS 53 (523)
Q Consensus 35 ~~~~~G--n~idvCPv-GAlt~ 53 (523)
.|..|| .|+++||+ ||+..
T Consensus 99 ~C~~C~~~~C~~~CP~~gAi~~ 120 (294)
T 1kqf_B 99 GCMHCEDPGCLKACPSAGAIIQ 120 (294)
T ss_dssp SCCCBSSCHHHHHCCSTTSEEE
T ss_pred cCCCcCChhhhhhCCccCcccc
Confidence 367899 69999999 99964
No 89
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=53.41 E-value=38 Score=29.79 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 219 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 219 (523)
++.++.+++.|.+.+ ++|.+++.+.+..-..++..+| ..+|-+...... ..+. . .....+..-|++|
T Consensus 31 ~~~i~~~~~~i~~a~-~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~------~~~~----~-~~~~~~~~~dvvI 97 (201)
T 3fxa_A 31 EEALVKTVEKIAECT-GKIVVAGCGTSGVAAKKLVHSF-NCIERPAVFLTP------SDAV----H-GTLGVLQKEDILI 97 (201)
T ss_dssp HHHHHHHHHHHHHCS-SCEEEECCTHHHHHHHHHHHHH-HHTTCCEEECCH------HHHT----T-TGGGGCCTTCEEE
T ss_pred HHHHHHHHHHHHhcC-CcEEEEEecHHHHHHHHHHHHH-HhcCCcEEEeCc------hHHH----h-hhhhcCCCCCEEE
Confidence 467888888888752 3676665544332223333333 346654322211 1110 0 1234566678888
Q ss_pred EEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 220 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 220 ~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
++... .++ +-....++.+ +++|++++.|-..
T Consensus 98 ~iS~s-G~t-~~~~~~~~~a-k~~g~~vi~IT~~ 128 (201)
T 3fxa_A 98 LISKG-GNT-GELLNLIPAC-KTKGSTLIGVTEN 128 (201)
T ss_dssp EECSS-SCC-HHHHTTHHHH-HHHTCEEEEEESC
T ss_pred EEeCC-CCC-HHHHHHHHHH-HHcCCeEEEEECC
Confidence 87543 333 2233334444 4589999999654
No 90
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=53.31 E-value=2.7 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.7
Q ss_pred Cccccc-----ccccccccCcccccc
Q 009859 35 TSELSG-----NVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~G-----n~idvCPvGAlt~k~ 55 (523)
.|.-|| .|+++||++|+.-..
T Consensus 8 ~C~gC~~c~~~~C~~~CP~~ai~~~~ 33 (166)
T 3gyx_B 8 KCDGCKGGEKTACMYICPNDLMILDP 33 (166)
T ss_dssp TCCCCCSSSCCHHHHHCTTSCEEEET
T ss_pred hcCCCCCCCcchhHHhCCccccEEec
Confidence 356688 999999999986543
No 91
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=53.25 E-value=13 Score=39.05 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccc-----hhhhhhcCcccCC--Cccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ-----SNADLRSGYIMNT--SISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~d 211 (523)
+++++.+++.|++.+ +..++.|+... .+....+.+|++.+|.+.+........ ....+|... .+. ...
T Consensus 191 ~~~v~~~~~~l~~a~--rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~~p~~~G~~g-~~~~~~~~- 266 (563)
T 2uz1_A 191 PADLDQALALLRKAE--RPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQ-NLYSFAKA- 266 (563)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGG-GGGGTTTT-
T ss_pred HHHHHHHHHHHHcCC--CcEEEECCccccccHHHHHHHHHHHhCCcEEEcCcccCcCCCCCChhhcCCCC-CCCHHHHh-
Confidence 578888999998764 66677765321 122346889999999887644322111 111111111 111 123
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||.+|+.+...... .+.. ...++.+++.||+..
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~---~~~~-~~~~~~~~i~id~d~ 305 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGH---GSGQ-LIPHSAQVIQVDPDA 305 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTT---TSCS-SSCTTSEEEEECSCG
T ss_pred hcCCCEEEEECCCCcccccc---cccc-cCCCCCeEEEEECCH
Confidence 88999999999986553211 0111 111267999998854
No 92
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=52.94 E-value=73 Score=27.17 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+. ++|.+++.+....-..++..+| ..+|-+...... . ....+.+-|++|+
T Consensus 28 ~~i~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~d~vi~ 88 (180)
T 1jeo_A 28 NKLDSLIDRIIKA--KKIFIFGVGRSGYIGRCFAMRL-MHLGFKSYFVGE--------T--------TTPSYEKDDLLIL 88 (180)
T ss_dssp HHHHHHHHHHHHC--SSEEEECCHHHHHHHHHHHHHH-HHTTCCEEETTS--------T--------TCCCCCTTCEEEE
T ss_pred HHHHHHHHHHHhC--CEEEEEeecHHHHHHHHHHHHH-HHcCCeEEEeCC--------C--------ccccCCCCCEEEE
Confidence 6678888888775 4776665543322222333333 346643222110 0 1234566788888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+...-.. +-....++.+ +++|++++.|-..
T Consensus 89 iS~sG~t--~~~~~~~~~a-k~~g~~vi~IT~~ 118 (180)
T 1jeo_A 89 ISGSGRT--ESVLTVAKKA-KNINNNIIAIVCE 118 (180)
T ss_dssp EESSSCC--HHHHHHHHHH-HTTCSCEEEEESS
T ss_pred EeCCCCc--HHHHHHHHHH-HHCCCcEEEEeCC
Confidence 8654322 3333344554 4689999999654
No 93
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=52.50 E-value=73 Score=27.96 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 219 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 219 (523)
++.++.+++.|.+. ++|.+++.+.+..-..++..+| ..+|.+...... . ....+..-|++|
T Consensus 34 ~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~DvvI 94 (200)
T 1vim_A 34 LETVGEMIKLIDSA--RSIFVIGAGRSGYIAKAFAMRL-MHLGYTVYVVGE--------T--------VTPRITDQDVLV 94 (200)
T ss_dssp HHHHHHHHHHHHHS--SCEEEECSHHHHHHHHHHHHHH-HHTTCCEEETTS--------T--------TCCCCCTTCEEE
T ss_pred HHHHHHHHHHHhcC--CEEEEEEecHHHHHHHHHHHHH-HhcCCeEEEeCC--------c--------cccCCCCCCEEE
Confidence 46777888888775 4676665443322222333333 345543221110 0 123455678888
Q ss_pred EEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 220 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 220 ~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
++...- ++ +-....++.+ +++|++++.|-..
T Consensus 95 ~iS~SG-~t-~~~i~~~~~a-k~~g~~vI~IT~~ 125 (200)
T 1vim_A 95 GISGSG-ET-TSVVNISKKA-KDIGSKLVAVTGK 125 (200)
T ss_dssp EECSSS-CC-HHHHHHHHHH-HHHTCEEEEEESC
T ss_pred EEeCCC-Cc-HHHHHHHHHH-HHCCCeEEEEECC
Confidence 876443 22 3333344444 4589999999654
No 94
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=51.80 E-value=11 Score=42.74 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred ccCccEEEEEcCCCCC--C-------CCC-CCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 353 IESAKFVYLMGADDVD--L-------EKL-PNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~--~-------~~l-~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
-.+.+.++++|+||.. . ++. ++..-+|++|+..|+|+..||..||....
T Consensus 220 ~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~irPG 278 (1015)
T 1kqf_A 220 IKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSG 278 (1015)
T ss_dssp GGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECCCTT
T ss_pred HhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeeccCCC
Confidence 3568999999999852 1 122 33446889999999999999999998654
No 95
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=51.54 E-value=3.6 Score=38.50 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.5
Q ss_pred CCcCcccccccccccccCccc
Q 009859 32 KLMTSELSGNVIDICPVGALT 52 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt 52 (523)
....|..||+|+++||+|.-.
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i~~ 231 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGLNP 231 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCCCH
T ss_pred CCCcCccccchhhhcCCCCCH
Confidence 445789999999999999654
No 96
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=51.23 E-value=75 Score=28.44 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHh-cC--CCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCE
Q 009859 141 DALAVVAEVMLQ-AK--PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADC 217 (523)
Q Consensus 141 eAl~~ia~~L~~-~~--~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~ 217 (523)
+.++.+++.|.+ +. .++|.+++.+.+..-..++..+| ..+|-+....... .+ . ......+..-|+
T Consensus 42 ~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l-~~lg~~~~~~~~~------~~----~-~~~~~~~~~~Dl 109 (220)
T 3etn_A 42 DAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTF-CSTGIPSVFLHPS------EA----Q-HGDLGILQENDL 109 (220)
T ss_dssp THHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHH-HHTTCCEEECCTT------GG----G-BTGGGGCCTTCE
T ss_pred HHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHH-HhcCCcEEEeCCH------HH----H-HhhhccCCCCCE
Confidence 566677777766 21 25776665543322223333333 3466533222111 00 0 112355667788
Q ss_pred EEEEcCCCCcchhhHHHHHHHHHHh--CCCeEEEEcCC
Q 009859 218 FLLVGTQPRVEAAMVNARIRKTVRA--NNAKVGYIGPA 253 (523)
Q Consensus 218 il~~G~n~~~~~p~~~~~lr~a~~~--~g~klv~idp~ 253 (523)
+|++...- ++ +-+...++. +++ +|++++.|-..
T Consensus 110 vI~iS~SG-~t-~~~i~~~~~-ak~~~~Ga~vI~IT~~ 144 (220)
T 3etn_A 110 LLLISNSG-KT-REIVELTQL-AHNLNPGLKFIVITGN 144 (220)
T ss_dssp EEEECSSS-CC-HHHHHHHHH-HHHHCTTCEEEEEESC
T ss_pred EEEEcCCC-CC-HHHHHHHHH-HHhcCCCCeEEEEECC
Confidence 88876533 22 223333444 456 89999999654
No 97
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=51.12 E-value=3 Score=41.50 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=13.3
Q ss_pred cccccccccCccccc
Q 009859 40 GNVIDICPVGALTSK 54 (523)
Q Consensus 40 Gn~idvCPvGAlt~k 54 (523)
|.|+++||+||+.-.
T Consensus 214 ~~Cv~~CP~~AI~~~ 228 (366)
T 3mm5_B 214 PSTVAACPTGALKPD 228 (366)
T ss_dssp HHHHHTCTTCCEEEE
T ss_pred cchhccCCccceEec
Confidence 999999999999643
No 98
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=50.33 E-value=17 Score=38.37 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhcCcccCCC--ccccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGLE 213 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di~ 213 (523)
+++++.+++.|++.+ +..++.|+... .....+.+|++.+|.+.+........ ....+|.....+.. ..-++
T Consensus 192 ~~~i~~~~~~l~~a~--rpvil~G~g~~-~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~ 268 (590)
T 1v5e_A 192 AQDIDAAVELLNNSK--RPVIYAGIGTM-GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETIL 268 (590)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECGGGT-TCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CeEEEEcCchh-HHHHHHHHHHHHHCCCEEEccccCcCCCCCChhhCccCcccCCHHHHHHHH
Confidence 477888888888763 55566664333 33456889999999887654332211 11112221122211 13467
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++|+||.+|+.+.... .....+ .+.+++.||+..
T Consensus 269 ~aDlvl~iG~~~~~~~-~~~~~~------~~~~~i~id~d~ 302 (590)
T 1v5e_A 269 EADTVLFAGSNFPFSE-VEGTFR------NVDNFIQIDIDP 302 (590)
T ss_dssp HCSEEEEESCCCTTTT-TTTTTT------TCSEEEEEESCG
T ss_pred hCCEEEEECCCCcchh-ccccCC------CCCeEEEEeCCH
Confidence 9999999999774432 000001 357999998854
No 99
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=49.96 E-value=5.3 Score=37.89 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=16.6
Q ss_pred cCcccccc--cccccccCccccc
Q 009859 34 MTSELSGN--VIDICPVGALTSK 54 (523)
Q Consensus 34 ~~~~~~Gn--~idvCPvGAlt~k 54 (523)
..|..|+| |+++||+ |+...
T Consensus 66 ~~C~~C~~p~C~~~CP~-Ai~~~ 87 (274)
T 1ti6_B 66 TPCMHCENAPCVAKGNG-AVYQR 87 (274)
T ss_dssp ECCCCCTTCHHHHHTTT-SEEEC
T ss_pred CcCCCCCChHHHhhChH-Hhhhc
Confidence 35788999 9999999 98643
No 100
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=49.57 E-value=13 Score=35.03 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=33.7
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH 262 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~ 262 (523)
..++++|++|++|+.... .|.. ...+.+. ++|++++.|++..+..-..++
T Consensus 208 ~~~~~aDl~lviGTSl~V-~Paa-~l~~~a~-~~g~~~v~IN~~~t~~d~~~~ 257 (273)
T 3riy_A 208 RELAHCDLCLVVGTSSVV-YPAA-MFAPQVA-ARGVPVAEFNTETTPATNRFR 257 (273)
T ss_dssp HHHHHCSEEEEESCCSCE-ETGG-GHHHHHH-HTTCCEEEEESSCCTTGGGSS
T ss_pred HHHhcCCEEEEEeeCCcc-hhHH-HhHHHHH-HCCCEEEEECCCCCCCCccee
Confidence 346789999999998655 4432 1223444 489999999987766544443
No 101
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=49.35 E-value=3.8 Score=41.04 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=13.1
Q ss_pred ccccccccccCcccc
Q 009859 39 SGNVIDICPVGALTS 53 (523)
Q Consensus 39 ~Gn~idvCPvGAlt~ 53 (523)
++.|+++||+||+.-
T Consensus 224 ~~~cv~~CPt~AI~~ 238 (386)
T 3or1_B 224 IPLAVAACPTAAVKP 238 (386)
T ss_dssp HHHHHHHCTTCCEEE
T ss_pred chhhhhhCchhhccc
Confidence 389999999999964
No 102
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=49.28 E-value=3.7 Score=39.40 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.6
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|.-||.|+++||++|+.-..
T Consensus 132 ~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 132 NCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp GCCCCCHHHHHCTTCCCEEET
T ss_pred cCCCcchhhhcCCCCCcEecC
Confidence 467899999999999998543
No 103
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=49.05 E-value=3.5 Score=37.57 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=17.0
Q ss_pred cCcccc------c---ccccccccCcccccc
Q 009859 34 MTSELS------G---NVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~------G---n~idvCPvGAlt~k~ 55 (523)
-.|.+| | .|+++||+|||+-.+
T Consensus 135 ~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~ 165 (214)
T 1h0h_B 135 AKCDMCIDRITNGLRPACVTSCPTGAMNFGD 165 (214)
T ss_dssp ECCCTTHHHHTTTCCCHHHHHCSSSCEEEEE
T ss_pred CcCCCCcchhhcCCChhHHHhcCcccEEEcc
Confidence 347788 5 899999999987654
No 104
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=48.79 E-value=3.8 Score=38.02 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=18.5
Q ss_pred CCCcCcccccccccccccCcccc
Q 009859 31 EKLMTSELSGNVIDICPVGALTS 53 (523)
Q Consensus 31 ~~~~~~~~~Gn~idvCPvGAlt~ 53 (523)
.....|..||+|.++||+|.-..
T Consensus 203 ~~~~~C~~Cg~C~~vCP~~i~~~ 225 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPKNLPLQ 225 (241)
T ss_dssp TTGGGCCCCCHHHHHCTTCCCHH
T ss_pred cCcccCcccChhhHhcCCCCChH
Confidence 34567899999999999996543
No 105
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.57 E-value=1.1e+02 Score=27.18 Aligned_cols=107 Identities=18% Similarity=0.329 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+-|..++..+..+.+..|.++++.... ..+..+++...|...+..+ |-.+...|..+..+..-|++++
T Consensus 50 ~~L~~A~~~i~~~~~~~ilfV~tk~~~---~~~V~k~A~~~g~~~v~~r---------w~gG~lTN~~~~~~~~Pdllvv 117 (202)
T 3j20_B 50 ERLKVAGKFLAKFEPQSILAVSVRLYG---QKPVKKFGEVTGARAIPGR---------FLPGTMTNPAVKNFFEPDVLIV 117 (202)
T ss_dssp HHHHHHHHHHHHSCSSCEEEECCCTTT---HHHHHHHHHHHSCCCCCSS---------CCSSSSSCSSSSSCCCCSEEEE
T ss_pred HHHHHHHHHHHhhCCCeEEEEecChHH---HHHHHHHHHHHCCceeCce---------ecCCCcccHhHHhccCCCeEEE
Confidence 344555566666666778776665443 3567888888887544221 1111122333444567888888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEE-EEcCCCCCCc-chhccCCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVG-YIGPATDLNY-DHQHLGTG 266 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv-~idp~~~~t~-~~a~~g~~ 266 (523)
+ ||..++. .++++.+ -|..++ .+|...++.. ...-|+.|
T Consensus 118 ~--Dp~~d~~----ai~EA~~-l~IP~Ial~DTn~~p~~Vd~~IP~Nd 158 (202)
T 3j20_B 118 T--DPRADHQ----AMREAVE-IGIPIVALVDTENLLSYVDLAIPTNN 158 (202)
T ss_dssp S--CTTTSHH----HHHHHHH-HTCCEEEEECTTCCCTTCCEEEECCC
T ss_pred e--CCccchH----HHHHHHH-cCCCEEEEEcCCCCccccCEEEeCCC
Confidence 7 6776653 4667765 677776 5677665532 22335554
No 106
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=48.33 E-value=20 Score=33.34 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=32.0
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchh
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQ 261 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a 261 (523)
..++++|++|++|+.... .|. .++...++++|++++.|++..+.....+
T Consensus 173 ~~~~~adlllviGTSl~V-~P~--~~l~~~a~~~g~~~i~IN~~~~~~d~~~ 221 (249)
T 1m2k_A 173 REVERADVIIVAGTSAVV-QPA--ASLPLIVKQRGGAIIEINPDETPLTPIA 221 (249)
T ss_dssp HHHHHCSEEEEESCCSCS-TTG--GGHHHHHHHTTCEEEEECSSCCTTGGGC
T ss_pred HHHhcCCEEEEEccCCCc-cch--HHHHHHHHHcCCeEEEEeCCCCCCCcce
Confidence 345689999999985433 443 2233333458999999999876643333
No 107
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=48.31 E-value=3.7 Score=40.44 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.3
Q ss_pred CcccccccccccccCcccccc
Q 009859 35 TSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k~ 55 (523)
.|..||.|+++||+||+.-..
T Consensus 183 kCigCg~Cv~aCP~~Ai~~~~ 203 (352)
T 2ivf_B 183 RCKGHRHCVEACPYKAIYFNP 203 (352)
T ss_dssp TCCCCCHHHHHCTTCCEEEET
T ss_pred hcCCchHHHhhcCccceeccc
Confidence 477899999999999998764
No 108
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=48.11 E-value=72 Score=27.39 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 219 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 219 (523)
++.++.+++.|.+. ++|.+++.+....-..+ +...+..+|-+........ ..+. .....+..-|++|
T Consensus 26 ~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~-~~~~l~~~g~~~~~~~~~~----~~~~------~~~~~~~~~d~~i 92 (187)
T 3sho_A 26 PEAIEAAVEAICRA--DHVIVVGMGFSAAVAVF-LGHGLNSLGIRTTVLTEGG----STLT------ITLANLRPTDLMI 92 (187)
T ss_dssp HHHHHHHHHHHHHC--SEEEEECCGGGHHHHHH-HHHHHHHTTCCEEEECCCT----HHHH------HHHHTCCTTEEEE
T ss_pred HHHHHHHHHHHHhC--CEEEEEecCchHHHHHH-HHHHHHhcCCCEEEecCCc----hhHH------HHHhcCCCCCEEE
Confidence 36677888888775 46766555543332333 3333345665433222111 0110 0123445567777
Q ss_pred EEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 220 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 220 ~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++... .++ +-....++.+ +++|++++.|-...
T Consensus 93 ~iS~s-G~t-~~~~~~~~~a-k~~g~~vi~IT~~~ 124 (187)
T 3sho_A 93 GVSVW-RYL-RDTVAALAGA-AERGVPTMALTDSS 124 (187)
T ss_dssp EECCS-SCC-HHHHHHHHHH-HHTTCCEEEEESCT
T ss_pred EEeCC-CCC-HHHHHHHHHH-HHCCCCEEEEeCCC
Confidence 77543 332 3333345554 45899999996543
No 109
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=45.66 E-value=16 Score=33.85 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=32.0
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchh
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQ 261 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a 261 (523)
..++++|++|++|+.... .|.. ++...++++|++++.|++..+.....+
T Consensus 176 ~~~~~adl~lviGTSl~V-~P~~--~l~~~a~~~g~~~i~IN~~~~~~d~~~ 224 (246)
T 1yc5_A 176 GLSSRASLMIVLGSSLVV-YPAA--ELPLITVRSGGKLVIVNLGETPFDDIA 224 (246)
T ss_dssp HHHHHCSEEEEESCCSCE-ETGG--GHHHHHHHHTCEEEEECSSCCTTGGGC
T ss_pred HHHhcCCEEEEECCCCcc-hhHH--HHHHHHHHcCCeEEEEeCCCCCCCcce
Confidence 456789999999985433 4532 232223347999999999877643333
No 110
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=44.70 E-value=4.4 Score=36.30 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=12.0
Q ss_pred cccccccccccccCcc
Q 009859 36 SELSGNVIDICPVGAL 51 (523)
Q Consensus 36 ~~~~Gn~idvCPvGAl 51 (523)
|.-||.|+++||++|+
T Consensus 90 CigC~~C~~~CP~~Ai 105 (195)
T 2vpz_B 90 CIACGACIAACPYDAR 105 (195)
T ss_dssp CCCCCHHHHHCTTCCC
T ss_pred CCCcChhHhhCCCCCe
Confidence 4567888888888776
No 111
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=44.10 E-value=51 Score=28.32 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+.++.+++.|.+.+ ++|.+++.+....-..++..+| ..+|.+....... .... .....+..-|++|+
T Consensus 36 ~~i~~~~~~i~~a~-~~I~i~G~G~S~~~a~~~~~~l-~~~g~~~~~~~~~-----~~~~------~~~~~~~~~d~vI~ 102 (183)
T 2xhz_A 36 QNFTLACEKMFWCK-GKVVVMGMGASGHIGRKMAATF-ASTGTPSFFVHPG-----EAAH------GDLGMVTPQDVVIA 102 (183)
T ss_dssp HHHHHHHHHHHTCS-SCEEEEECHHHHHHHHHHHHHH-HTTTCCEEECCTT-----HHHH------HTSTTCCTTCEEEE
T ss_pred HHHHHHHHHHHhCC-CeEEEEeecHHHHHHHHHHHHH-HhcCceEEEeCch-----HHhh------hhhccCCCCCEEEE
Confidence 37788888887652 3676666553322222333333 3355433222110 0000 01234556788888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
+...- + .+-....++.+ +++|++++.|-..
T Consensus 103 iS~sG-~-t~~~~~~~~~a-k~~g~~vi~IT~~ 132 (183)
T 2xhz_A 103 ISNSG-E-SSEITALIPVL-KRLHVPLICITGR 132 (183)
T ss_dssp ECSSS-C-CHHHHHHHHHH-HTTTCCEEEEESC
T ss_pred EeCCC-C-CHHHHHHHHHH-HHCCCCEEEEECC
Confidence 86432 2 23333344444 5689999998653
No 112
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=43.94 E-value=12 Score=36.66 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=30.4
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 257 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t 257 (523)
..+++||++|++|+..... |... ..+.+ +++|.+|+.|++..+..
T Consensus 202 ~~~~~aDllLViGTSL~V~-Paa~-Lp~~a-~~~G~~vviIN~~pT~~ 246 (355)
T 3pki_A 202 EASRNADLSITLGTSLQIR-PSGN-LPLAT-KRRGGRLVIVNLQPTKH 246 (355)
T ss_dssp HHHHHCSEEEEESCCCCST-TGGG-TTHHH-HHTTCEEEEECSSCCTT
T ss_pred HHHhcCCEEEEEeeCCCch-hhhh-hHHHH-HhcCCEEEEECCCCCCC
Confidence 3567899999999986543 3211 11233 34899999999876653
No 113
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=43.87 E-value=16 Score=33.99 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=31.9
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchh
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQ 261 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a 261 (523)
..++++|++|++|+.... .|. .++...++++|++++.|++..+.....+
T Consensus 179 ~~~~~adl~lviGTSl~V-~P~--~~l~~~a~~~g~~~i~iN~~~~~~d~~~ 227 (253)
T 1ma3_A 179 EEAKHCDAFMVVGSSLVV-YPA--AELPYIAKKAGAKMIIVNAEPTMADPIF 227 (253)
T ss_dssp HHHHHCSEEEEESCCSCE-ETG--GGHHHHHHHHTCEEEEEESSCCTTGGGC
T ss_pred HHHHhCCEEEEECCCcee-ccH--HHHHHHHHHcCCeEEEEeCCCCCCCCce
Confidence 345689999999985433 453 2233333347999999999876643333
No 114
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=43.14 E-value=15 Score=38.57 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCC-ccccccCCE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTS-ISGLEKADC 217 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~di~~ad~ 217 (523)
+++++.+++.|++.+ +..++.|+... .+....+.+|++.+|.+.+........+..+ .....|.. ..-++++|+
T Consensus 198 ~~~i~~~~~~l~~a~--rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~--hp~~~G~~~~~~l~~aDl 273 (564)
T 2q28_A 198 PKSVTSAISLLAKAE--RPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDT--HPLSAAAARSFALANADV 273 (564)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTT--CTTBCGGGHHHHHHHCSE
T ss_pred HHHHHHHHHHHHcCC--CcEEEECcccccccHHHHHHHHHHHhCCCEEeccCccccCCCC--ChhhcChHHHhHhhcCCE
Confidence 578899999998864 66677775321 1223568899999998876443221111100 00111211 124679999
Q ss_pred EEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 218 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 218 il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
||.+|+.+...... . + ... ..++++|.||...
T Consensus 274 vl~iG~~~~~~~~~-~-~--~~~-~~~~~~i~id~d~ 305 (564)
T 2q28_A 274 VMLVGARLNWLLAH-G-K--KGW-AADTQFIQLDIEP 305 (564)
T ss_dssp EEEESCCCSGGGGG-G-T--TTS-CTTCEEEEEESCG
T ss_pred EEEECCcccccccc-c-c--ccc-CCCCeEEEEeCCH
Confidence 99999987432111 0 1 111 1468999998754
No 115
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=43.04 E-value=7.1 Score=37.15 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.1
Q ss_pred CCcCcccccccccccccCccccc
Q 009859 32 KLMTSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 32 ~~~~~~~~Gn~idvCPvGAlt~k 54 (523)
....|..||+|.++||+|-=..+
T Consensus 235 ~l~~C~~Cg~C~~vCP~gI~~~~ 257 (282)
T 3vr8_B 235 SAFKCHTIMNCTKTCPKHLNPAR 257 (282)
T ss_pred CcccChhhCCccccCcCCCCHHH
Confidence 45578899999999999865433
No 116
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=42.88 E-value=17 Score=38.12 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCc----cchhhhhhc-CcccCCCccc--
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG----AQSNADLRS-GYIMNTSISG-- 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~d-- 211 (523)
+++++.+++.|++.+ +..++.|+.. ..+....+.+|++.+|.+.+...... ......+|. ....+.....
T Consensus 198 ~~~i~~~~~~l~~a~--rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~ 275 (563)
T 2vk8_A 198 KEVIDTILVLDKDAK--NPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEA 275 (563)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCEEEECcCccccchHHHHHHHHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHH
Q ss_pred cccCCEEEEEcCCCCc
Q 009859 212 LEKADCFLLVGTQPRV 227 (523)
Q Consensus 212 i~~ad~il~~G~n~~~ 227 (523)
++++|+||.+|+.+..
T Consensus 276 l~~aDlvl~iG~~~~~ 291 (563)
T 2vk8_A 276 VESADLILSVGALLSD 291 (563)
T ss_dssp HHTCSEEEEESCCCCT
T ss_pred HHhCCEEEEECCCCcc
No 117
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=41.03 E-value=18 Score=31.58 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=25.7
Q ss_pred cHHH-HHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHH
Q 009859 277 RHPF-FSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKK 317 (523)
Q Consensus 277 i~~~-a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~ 317 (523)
++++ ++.|.+|++|+|++|. .... .....+..|+..
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~----~A~~eL~~~ae~ 60 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTD----EMFERVKKFVEK 60 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCH----HHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCc----cHHHHHHHHHHc
Confidence 6788 9999999999999998 6542 223344555554
No 118
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=40.94 E-value=1.2e+02 Score=27.04 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEE
Q 009859 141 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLL 220 (523)
Q Consensus 141 eAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 220 (523)
+-|..+++-+..+.+..|.++++.... ..+.++++...|...+..+ |-.+...|..+..+..-|++++
T Consensus 54 ~~L~~A~~~i~~i~~~~iLfVgTk~~~---~~~V~~~A~~~g~~~v~~r---------wlgG~LTN~~~~~f~~PdlliV 121 (208)
T 1vi6_A 54 ERIRVAAKFLSRYEPSKILLVAARQYA---HKPVQMFSKVVGSDYIVGR---------FIPGTLTNPMLSEYREPEVVFV 121 (208)
T ss_dssp HHHHHHHHHHTTSCGGGEEEEECSGGG---HHHHHHHHHHHCCEEEESS---------CCTTTTTCTTSTTCCCCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHH---HHHHHHHHHHhCCeeecCE---------ECCCcccChhhHhhCCCCEEEE
Confidence 445555666666655678777765433 3467788888887544321 1111122334556678898888
Q ss_pred EcCCCCcchhhHHHHHHHHHHhCCCeEEE-EcCCCCCCc-chhccCCC
Q 009859 221 VGTQPRVEAAMVNARIRKTVRANNAKVGY-IGPATDLNY-DHQHLGTG 266 (523)
Q Consensus 221 ~G~n~~~~~p~~~~~lr~a~~~~g~klv~-idp~~~~t~-~~a~~g~~ 266 (523)
+ ||..++ ..+++|.+ -|..+|. +|...++.. ...-|+.|
T Consensus 122 ~--Dp~~e~----~ai~EA~~-l~IPvIalvDTn~~p~~Vd~~IP~Nd 162 (208)
T 1vi6_A 122 N--DPAIDK----QAVSEATA-VGIPVVALCDSNNSSADVDLVIPTNN 162 (208)
T ss_dssp S--CTTTTH----HHHHHHHH-TTCCEEEEECTTCCCTTCSEEEESCC
T ss_pred E--CCCcch----hHHHHHHH-hCCCEEEEeCCCCCccccCEEEeCCC
Confidence 7 566654 24778765 7887775 576655432 22236654
No 119
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=39.98 E-value=18 Score=38.04 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCF 218 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~i 218 (523)
+++++.+++.|++.+ +..++.|+.. ..+....+.+|++.+|.+.+........+..+.-...... ...-++++|+|
T Consensus 200 ~~~i~~~~~~l~~a~--rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~-~~~~l~~aDlv 276 (568)
T 2c31_A 200 EDAIARAADLIKNAK--RPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAAT-RAFALAQCDVC 276 (568)
T ss_dssp HHHHHHHHHHHHTCS--SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGG-HHHHHHHCSEE
T ss_pred HHHHHHHHHHHHhCC--CCEEEECcccccccHHHHHHHHHHHhCCCEEecccccccCCCCChhhcchH-HHhhhccCCEE
Q ss_pred EEEcCCC
Q 009859 219 LLVGTQP 225 (523)
Q Consensus 219 l~~G~n~ 225 (523)
|.+|+.+
T Consensus 277 l~iG~~~ 283 (568)
T 2c31_A 277 VLIGARL 283 (568)
T ss_dssp EEESCCC
T ss_pred EEECCCC
No 120
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=39.34 E-value=9.1 Score=43.30 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=37.8
Q ss_pred ccCccEEEEEcCCCCCC---------CCCCCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 353 IESAKFVYLMGADDVDL---------EKLPNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~---------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
-.+.+.++++|+||... ++.++..-+|++|+..|+|+..||+.||...-
T Consensus 182 ~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~irPG 239 (977)
T 1h0h_A 182 LKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSG 239 (977)
T ss_dssp GGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEECCCTT
T ss_pred HhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeeccCCC
Confidence 35689999999998521 12233456889999999999999999998765
No 121
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=37.89 E-value=7.1 Score=39.54 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=23.1
Q ss_pred cccccccccccCcccccccccccccccceeeeeeec---cCCCCCcEE
Q 009859 38 LSGNVIDICPVGALTSKPFAFKARNWELKGTETIDV---TDAVGSNIR 82 (523)
Q Consensus 38 ~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~---~C~~gC~i~ 82 (523)
.++.||++|||+|+.-.. =.++.-..-|. +|-..|.--
T Consensus 276 i~~~vv~~CPt~ai~~~~-------~~l~Id~~~C~~Cg~Ci~~CP~a 316 (437)
T 3or1_A 276 IEAEVVGLCPTGCMTYES-------GTLSIDNKNCTRCMHCINTMPRA 316 (437)
T ss_dssp HHHHTTTTCTTCCEEEET-------TEEEECGGGCCCCSHHHHHCTTT
T ss_pred cchhhhccCcHHheeecC-------CEEEEccccCCchhhhHhhCcHh
Confidence 356899999999996431 12444444454 444557543
No 122
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=37.04 E-value=31 Score=36.13 Aligned_cols=108 Identities=9% Similarity=0.014 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccch----hhhhhc-CcccCC-C-ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRS-GYIMNT-S-ISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~~----~~~~~~-~~~~~~-~-~~d 211 (523)
+++++.+++.|++.+ +..++.|+.. ..+....+.+|++.+|.+.+........+ ....|. ....+. . ..-
T Consensus 196 ~~~i~~~~~~l~~a~--rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~ 273 (566)
T 2vbi_A 196 KAAVDATVALLEKSA--SPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQEL 273 (566)
T ss_dssp HHHHHHHHHHHHTCS--CEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHH
T ss_pred HHHHHHHHHHHHhCC--CCEEEECcCccccchHHHHHHHHHHhCCCEEEccccCccCCCCCccccccccCccCCHHHHHH
Confidence 577889999998764 5666666432 11234568899999998776443221111 111121 011121 1 133
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||.+|+.+.......+ .+ ...+.+++.||+..
T Consensus 274 l~~aDlvl~iG~~~~~~~~~~~--~~---~~~~~~~i~id~d~ 311 (566)
T 2vbi_A 274 VETSDALLCIAPVFNDYSTVGW--SA---WPKGPNVILAEPDR 311 (566)
T ss_dssp HHTCSEEEEESCCCBTTTTTTT--TS---CCCSTTEEEECSSE
T ss_pred HHhCCEEEEECCCccccccccc--cc---cCCCCcEEEEeCCh
Confidence 6899999999998754432111 11 11467899998864
No 123
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=36.13 E-value=17 Score=39.72 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=37.8
Q ss_pred ccCccEEEEEcCCCCCCC----------CCCCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 353 IESAKFVYLMGADDVDLE----------KLPNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~~----------~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
-.+.+.++++|+||.... +.++..-+|++|+..|+|+..||..||...-
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~irPG 255 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPG 255 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECCCTT
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCCCCC
Confidence 357899999999986421 1123446889999999999999999998654
No 124
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=34.38 E-value=36 Score=35.65 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCC-cHHHHHHHHHHHHHcCCCccccCCCccc----hhhhhhc-CcccCCC--ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRS-GYIMNTS--ISG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~-~~e~~~~~~~l~~~lG~~~~~~~~~~~~----~~~~~~~-~~~~~~~--~~d 211 (523)
+++++.+++.|++.+ +..++.|+.. ..+....+.+|++.+|.+.+........ .....|. ....+.. ..-
T Consensus 196 ~~~i~~~~~~l~~a~--rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~ 273 (568)
T 2wvg_A 196 NAAVEETLKFIANRD--KVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKT 273 (568)
T ss_dssp HHHHHHHHHHHTTCC--CEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHH
T ss_pred HHHHHHHHHHHHhCC--CCEEEECccccccchHHHHHHHHHHhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHH
Confidence 577888899888763 6666666432 1223456889999999876544322111 1111121 1111211 134
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~ 254 (523)
++++|+||.+|+.+.......+ .+ ...+.+++.||+..
T Consensus 274 l~~aDlvl~iG~~~~~~~~~~~--~~---~~~~~~~i~id~d~ 311 (568)
T 2wvg_A 274 MKEADAVIALAPVFNDYSTTGW--TD---IPDPKKLVLAEPRS 311 (568)
T ss_dssp HHHCSEEEEESCCCBTTTTTTT--TC---CCCTTTEEEECSSE
T ss_pred HHhCCEEEEECCCccccccccc--cc---CCCCCcEEEEeCCh
Confidence 6789999999997654322111 11 01467899998754
No 125
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=34.31 E-value=10 Score=42.95 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=37.3
Q ss_pred ccCccEEEEEcCCCCC--C-------CCCCCCceEEEEcccCCcccCcceEEecCCCC
Q 009859 353 IESAKFVYLMGADDVD--L-------EKLPNDAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~--~-------~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
-.+.+.++++|+||.. . ++.++..-+|++|+..|+|+..||..||...-
T Consensus 244 ~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~irPG 301 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVPVRVG 301 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEECCCTT
T ss_pred HhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEeccCCC
Confidence 3567999999999852 1 11123346889999999999999999998764
No 126
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=33.00 E-value=26 Score=36.72 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCc-HHHHHHHHHHHHHcCCCccccCCCc----cchhhhhhc-CcccCCCc--cc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTG----AQSNADLRS-GYIMNTSI--SG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~-~e~~~~~~~l~~~lG~~~~~~~~~~----~~~~~~~~~-~~~~~~~~--~d 211 (523)
+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+...... ......+|. ....+... ..
T Consensus 209 ~~~i~~~~~~l~~a~--rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~ 286 (565)
T 2nxw_A 209 AACADEVLAAMRSAT--SPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRL 286 (565)
T ss_dssp HHHHHHHHHHHHHCS--SEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CCEEEECCCcchhchHHHHHHHHHHhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHH
Q ss_pred cccCCEEEEEcCCCCc
Q 009859 212 LEKADCFLLVGTQPRV 227 (523)
Q Consensus 212 i~~ad~il~~G~n~~~ 227 (523)
++++|+||.+|+.+..
T Consensus 287 l~~aDlvl~iG~~~~~ 302 (565)
T 2nxw_A 287 VEESDGLFLLGAILSD 302 (565)
T ss_dssp HHTCSEEEEESCCBCS
T ss_pred HHhCCEEEEECCCccc
No 127
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=32.89 E-value=11 Score=40.91 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=37.7
Q ss_pred ccCccEEEEEcCCCCCC---------CCCCC--CceEEEEcccCCcccCcceEEecCCCC
Q 009859 353 IESAKFVYLMGADDVDL---------EKLPN--DAFVVYQGHHGDHGVYRANVILPASAF 401 (523)
Q Consensus 353 ~~~i~~l~~~g~n~~~~---------~~l~~--~~fvV~~d~~~t~ta~~ADvvLP~a~~ 401 (523)
-.+.+.++++|+||... ++.++ ..-+|++|+..|+|+.+||..||...-
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPG 223 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPG 223 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTT
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCCC
Confidence 35789999999998531 11222 446889999999999999999998754
No 128
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=32.41 E-value=90 Score=32.46 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCC-CccchhhhhhcCcccCC--CccccccCCEEEEEcCCCCcchhhH
Q 009859 156 EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEG-TGAQSNADLRSGYIMNT--SISGLEKADCFLLVGTQPRVEAAMV 232 (523)
Q Consensus 156 ~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~di~~ad~il~~G~n~~~~~p~~ 232 (523)
++..++.|... .+....+.+|++.+|.+.+.+.. .......+.. ...|. .-.-++++|+||.+|+.+.... .
T Consensus 220 ~rPvIl~G~~~-~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~--~~lg~~~~~~~~~~aDlvl~iG~~~~~~~--~ 294 (556)
T 3hww_A 220 KRGVVVAGRMS-AEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCAD--LWLGNAKATSELQQAQIVVQLGSSLTGKR--L 294 (556)
T ss_dssp SCEEEEECBCC-HHHHHHHHHHHHHHTCCEEECTTTCSCCSSCCHH--HHTTSHHHHHHHTTCSEEEEESBCCCCHH--H
T ss_pred CCeEEEECCCC-hHHHHHHHHHHHhcCCEEEEccCCCCCCCcCcHH--HHhcCchhhhcccCCCEEEEcCCCcccHH--H
Confidence 45666677643 34556788999999998765432 1100000000 01121 1234679999999999875432 1
Q ss_pred HHHHHHHHHhCCCeEEEEcCCC
Q 009859 233 NARIRKTVRANNAKVGYIGPAT 254 (523)
Q Consensus 233 ~~~lr~a~~~~g~klv~idp~~ 254 (523)
..++.. -...+++.||+..
T Consensus 295 ~~~~~~---~~~~~~i~id~d~ 313 (556)
T 3hww_A 295 LQWQAS---CEPEEYWIVDDIE 313 (556)
T ss_dssp HHHHHH---CCCSEEEEEESSC
T ss_pred HHHHhc---CCCCeEEEECCCC
Confidence 222222 1345899998754
No 129
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=32.10 E-value=34 Score=31.00 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=24.9
Q ss_pred eeeeeeeccCCCCCcEEEEEECCEEEEEecC
Q 009859 66 KGTETIDVTDAVGSNIRIDSRGPEVMRILPR 96 (523)
Q Consensus 66 ~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~ 96 (523)
-.+.|.|+.| |..|++.++++.|..+.|.
T Consensus 111 ~~I~S~Cp~t--G~pI~ltv~~~~i~~~~P~ 139 (220)
T 3f2g_A 111 ARVSSHCAAT--GAPVSLTVSPSEIQAVEPA 139 (220)
T ss_dssp EEEEEECTTT--CCEEEEEECSSCEEEEEST
T ss_pred eEEEecCCCC--CCeEEEEEcCCceeecCCC
Confidence 4678999988 7999999999999888875
No 130
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=31.99 E-value=10 Score=38.43 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.5
Q ss_pred CcccccccccccccCcc
Q 009859 35 TSELSGNVIDICPVGAL 51 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAl 51 (523)
+|..||+||.+||.+|.
T Consensus 302 ~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 302 NCTRCMHCINTMPRALK 318 (437)
T ss_dssp GCCCCSHHHHHCTTTEE
T ss_pred cCCchhhhHhhCcHhhc
Confidence 47899999999999654
No 131
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=31.71 E-value=1.5e+02 Score=28.62 Aligned_cols=99 Identities=19% Similarity=0.086 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHH-cCCCccccCCCccchhhhhhcCcccCCCccccccCCEE
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCF 218 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~i 218 (523)
.+.++.+++.|.+...++|.+++.+.+.. ....++.+++. +|-+..... ..++... ....+..-|++
T Consensus 39 ~~~i~~~~~~i~~~~~~~I~i~G~G~S~~-~a~~~~~~l~~~~g~~~~~~~------~~e~~~~-----~~~~l~~~dlv 106 (355)
T 2a3n_A 39 RQKAEQVADEIYQAGFSSLFFASVGGSLA-PMMAINEFAKELTTLPVYVEQ------AAELIHK-----GNKRLNKDSVV 106 (355)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEECGGGHH-HHHHHHHHHHHHCCSCEEEEE------HHHHHHH-----CCTTCCTTCEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEccHHHH-HHHHHHHHHHhhcCCeEEEcC------cHHHHhh-----chhcCCCCCEE
Confidence 47778888888774345787666554332 23334444454 554322110 1112110 11233456777
Q ss_pred EEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 219 LLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 219 l~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
|++... . +.+-....++.+. ++|++++.|-..
T Consensus 107 I~iS~S-G-~t~e~~~a~~~ak-~~Ga~vi~IT~~ 138 (355)
T 2a3n_A 107 ITLSKS-G-DTKESVAIAEWCK-AQGIRVVAITKN 138 (355)
T ss_dssp EEECSS-S-CCHHHHHHHHHHH-HTTCEEEEEESC
T ss_pred EEEeCC-C-CCHHHHHHHHHHH-HCCCeEEEEECC
Confidence 777543 2 2333444455554 589999988553
No 132
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=31.19 E-value=11 Score=38.01 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=16.0
Q ss_pred CcccccccccccccCccccc
Q 009859 35 TSELSGNVIDICPVGALTSK 54 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~k 54 (523)
.|-.||+||.+||.++...+
T Consensus 285 ~Ci~Cg~Ci~~CP~~~~~~~ 304 (418)
T 3mm5_A 285 ECVRCMHCINKMPKALKPGD 304 (418)
T ss_dssp TCCCCCHHHHHCTTTEECCS
T ss_pred hcCccChhHHhCcHhhccCC
Confidence 47889999999999765433
No 133
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=29.07 E-value=33 Score=35.58 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCC-CcHHHHHHHHHHHHHcCCCc-cccCCCc----cchhhhhhcCcccCCCc--cc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRL-SDAESMMALKDFLNRMGSNN-VWCEGTG----AQSNADLRSGYIMNTSI--SG 211 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~-~~~e~~~~~~~l~~~lG~~~-~~~~~~~----~~~~~~~~~~~~~~~~~--~d 211 (523)
+++++.+++.|++.+ +..++.|.. ...+....+.+|++.+|.+. ..+.... .......|... .+... .-
T Consensus 187 ~~~i~~~~~~l~~a~--rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~g~g~~~~~~p~~~G~~g-~~~~~~~~~ 263 (528)
T 1q6z_A 187 DQDLDILVKALNSAS--NPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMP-AGIAAISQL 263 (528)
T ss_dssp HHHHHHHHHHHHHCS--SCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECC-SCHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CeEEEECCccchhhHHHHHHHHHHHHCCCEEEeccCccccCCCCCccccCcCC-CCcHHHHHH
Q ss_pred cccCCEEEEEcCCCCc
Q 009859 212 LEKADCFLLVGTQPRV 227 (523)
Q Consensus 212 i~~ad~il~~G~n~~~ 227 (523)
++++|+||.+|+.+..
T Consensus 264 l~~aDlvl~iG~~~~~ 279 (528)
T 1q6z_A 264 LEGHDVVLVIGAPVFR 279 (528)
T ss_dssp HTTCSEEEEESSCTTC
T ss_pred HhcCCEEEEECCCCcc
No 134
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=28.52 E-value=12 Score=43.35 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=36.3
Q ss_pred cCccEEEEEcCCCCC---------CCCCCCCceEEEEcccCCcccCcceEEecCCC
Q 009859 354 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASA 400 (523)
Q Consensus 354 ~~i~~l~~~g~n~~~---------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~ 400 (523)
.+.+.++++|+||.. .++..+..-+|++|+..++|+++||..||...
T Consensus 245 ~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~irP 300 (1247)
T 1q16_A 245 YNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQ 300 (1247)
T ss_dssp GGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEECCCT
T ss_pred hhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEeeCC
Confidence 468999999999842 01222344689999999999999999999864
No 135
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=26.72 E-value=9.3 Score=40.37 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.2
Q ss_pred Cccccccccccccc----Ccccccc
Q 009859 35 TSELSGNVIDICPV----GALTSKP 55 (523)
Q Consensus 35 ~~~~~Gn~idvCPv----GAlt~k~ 55 (523)
.|..||.|+.+||+ +|+.-..
T Consensus 146 kCi~Cg~Cv~~CP~~~~~~ai~~~~ 170 (574)
T 3c8y_A 146 KCLLCGRCVNACGKNTETYAMKFLN 170 (574)
T ss_dssp GCCCCCHHHHHHHHHHSCCCSEEEE
T ss_pred cCcCCCCccchhCchhcCCceeecc
Confidence 37789999999997 9986543
No 136
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=26.69 E-value=64 Score=34.86 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc
Q 009859 215 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH 262 (523)
Q Consensus 215 ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~ 262 (523)
-+.++++|.||..+.|- ..+++++.+ +---+|++|...|.|+..+|
T Consensus 406 ik~l~~~g~Np~~~~p~-~~~~~~aL~-~l~~~V~~d~~~teTa~~AD 451 (727)
T 2e7z_A 406 VKAFFALASNALMGYAN-QQNALKGLM-NQDLVVCYDQFMTPTAQLAD 451 (727)
T ss_dssp CCEEEEESCCGGGSSSC-HHHHHHHHH-TCSEEEEEESSCCTTGGGCS
T ss_pred eEEEEEeCCChhhcCCC-HHHHHHHHh-CCCCEEEeecccCccHhhCc
Confidence 69999999999998876 346677664 44468899999999998887
No 137
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=26.44 E-value=12 Score=35.18 Aligned_cols=18 Identities=17% Similarity=0.578 Sum_probs=11.3
Q ss_pred cCcccccccccccccCccc
Q 009859 34 MTSELSGNVIDICPVGALT 52 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt 52 (523)
-.|.+||.|+.+|| +|+.
T Consensus 201 ~~C~~C~~C~~vCp-~aI~ 218 (265)
T 2pa8_D 201 LSCTLCEECLRYCN-GSIR 218 (265)
T ss_dssp GGCCCCCHHHHHHT-TSEE
T ss_pred ccCCCchHHHHhCC-CceE
Confidence 34666677777776 6654
No 138
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=26.05 E-value=1.4e+02 Score=25.05 Aligned_cols=95 Identities=7% Similarity=0.040 Sum_probs=47.1
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccc--cCCEEEEEcCCCCc---chh
Q 009859 156 EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLE--KADCFLLVGTQPRV---EAA 230 (523)
Q Consensus 156 ~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~--~ad~il~~G~n~~~---~~p 230 (523)
.+|+++..+.....+.......++.-|-................+.......++.++. +.|.+++-|..... ..+
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~ 82 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNE 82 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCH
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccCH
Confidence 3677777776655555555555554442111111100000000010001112345553 68999999874221 234
Q ss_pred hHHHHHHHHHHhCCCeEEEEc
Q 009859 231 MVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 231 ~~~~~lr~a~~~~g~klv~id 251 (523)
.+...+|+..+ +|..|..|.
T Consensus 83 ~l~~~l~~~~~-~~k~i~aiC 102 (168)
T 3l18_A 83 KAVMITRRMFE-DDKPVASIC 102 (168)
T ss_dssp HHHHHHHHHHH-TTCCEEEET
T ss_pred HHHHHHHHHHH-CCCEEEEEC
Confidence 45667888765 788887775
No 139
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=25.63 E-value=31 Score=36.01 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc----cchhhhhhc-CcccCCCc--ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG----AQSNADLRS-GYIMNTSI--SGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~----~~~~~~~~~-~~~~~~~~--~di 212 (523)
+++++.+++.|++.+ .-+.+++++....+....+.+|++.+|.+.+...... ......+|. .+..+... .-+
T Consensus 196 ~~~i~~~~~~l~~a~-rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l 274 (552)
T 1ovm_A 196 KAFRDAAENKLAMSK-RTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAI 274 (552)
T ss_dssp HHHHHHHHHHHHTCS-CEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCEEEECcCccccCHHHHHHHHHHHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHH
Q ss_pred ccCCEEEEEcCCCCc
Q 009859 213 EKADCFLLVGTQPRV 227 (523)
Q Consensus 213 ~~ad~il~~G~n~~~ 227 (523)
+++|+||.+|+.+..
T Consensus 275 ~~aD~vl~iG~~~~~ 289 (552)
T 1ovm_A 275 EGADTVLCVGTRFTD 289 (552)
T ss_dssp HTSSEEEEESCCCCT
T ss_pred HhCCEEEEECCCCCc
No 140
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=24.15 E-value=37 Score=35.56 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc----cchhhhhhc-CcccCCCc--ccc
Q 009859 140 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG----AQSNADLRS-GYIMNTSI--SGL 212 (523)
Q Consensus 140 deAl~~ia~~L~~~~~~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~----~~~~~~~~~-~~~~~~~~--~di 212 (523)
+++++.+++.|++.+ .-+.+++++....+....+.+|++.+|.+.+...... .......|. ....+... .-+
T Consensus 215 ~~~i~~~~~~l~~a~-rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l 293 (570)
T 2vbf_A 215 QVILSKIEESLKNAQ-KPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFV 293 (570)
T ss_dssp HHHHHHHHHHHHHCS-SEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCEEEECcCccccChHHHHHHHHHHHCCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHH
Q ss_pred ccCCEEEEEcCCCCc
Q 009859 213 EKADCFLLVGTQPRV 227 (523)
Q Consensus 213 ~~ad~il~~G~n~~~ 227 (523)
+++|+||.+|+.+.+
T Consensus 294 ~~aDlvl~iG~~~~~ 308 (570)
T 2vbf_A 294 ESADFILMLGVKLTD 308 (570)
T ss_dssp HHCSEEEEESCCCCG
T ss_pred HhCCEEEEECCCccc
No 141
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=23.82 E-value=1.4e+02 Score=26.27 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=49.6
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHcCCCccccCCCc-cchhhhhhcCcccCCCcccc--ccCCEEEEEcCCC--C--cc
Q 009859 156 EEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG-AQSNADLRSGYIMNTSISGL--EKADCFLLVGTQP--R--VE 228 (523)
Q Consensus 156 ~~i~~~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~di--~~ad~il~~G~n~--~--~~ 228 (523)
.+|+++..+.....+.......++.-|-......... .......+.......++.++ ++.|.|++-|... . ..
T Consensus 10 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~ 89 (208)
T 3ot1_A 10 KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFAD 89 (208)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHT
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhh
Confidence 4688887776655555555555555452111111100 00000001000111235555 5789999998752 1 13
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 229 AAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 229 ~p~~~~~lr~a~~~~g~klv~idp 252 (523)
.+.+...+|+..+ +|..|..|..
T Consensus 90 ~~~l~~~l~~~~~-~gk~i~aiC~ 112 (208)
T 3ot1_A 90 STALLALIDAFSQ-QGKLVAAICA 112 (208)
T ss_dssp CHHHHHHHHHHHH-TTCEEEEETT
T ss_pred CHHHHHHHHHHHH-cCCEEEEECh
Confidence 4556677888775 8888888753
No 142
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=23.71 E-value=17 Score=34.19 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=15.0
Q ss_pred ccccccccccccCcccc
Q 009859 37 ELSGNVIDICPVGALTS 53 (523)
Q Consensus 37 ~~~Gn~idvCPvGAlt~ 53 (523)
.-||.|++.||.||+.-
T Consensus 174 ~~C~~C~~~CP~g~I~i 190 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFEL 190 (265)
T ss_dssp SCCTTHHHHCTTCCEEE
T ss_pred hhHHHHHHhCcccCeEe
Confidence 67999999999999953
No 143
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=23.71 E-value=73 Score=33.25 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=28.3
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGN 319 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g 319 (523)
+.++++.|.++++|+|++|.+...... ...+..|+..+|
T Consensus 199 i~~~~~~l~~a~rpvil~G~g~~~~~a----~~~l~~lae~~~ 237 (568)
T 2wvg_A 199 VEETLKFIANRDKVAVLVGSKLRAAGA----EEAAVKFADALG 237 (568)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTTTTTC----HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCEEEECccccccch----HHHHHHHHHHhC
Confidence 457889999999999999998865432 334555666654
No 144
>3fqm_A NS5A, non-structural protein 5A; HCV, domain I, phosphoprotein, RNA-binding, metal BIND protein; 1.90A {Hepatitis c virus} PDB: 3fqq_A* 1zh1_A
Probab=23.02 E-value=67 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.3
Q ss_pred ccccceeeeeee-ccCCCCCcEEEEEECCEEEEEec
Q 009859 61 RNWELKGTETID-VTDAVGSNIRIDSRGPEVMRILP 95 (523)
Q Consensus 61 R~Wel~~~~siC-~~C~~gC~i~v~vr~g~v~rv~~ 95 (523)
.+|.-. .++ .-|.+||.|.-+|++|.+. |.+
T Consensus 15 G~W~Gd---G~~~TrCpCGa~ItGhVkNG~mr-i~g 46 (177)
T 3fqm_A 15 GVWRGD---GIMQTTCPCGAQITGHVKNGSMR-IVG 46 (177)
T ss_dssp SEEESC---EEEEEECTTSCEEEEEEETTEEE-EEC
T ss_pred ceeccC---ceEEeecCCCcEEEEEEeCCEEE-Eec
Confidence 456543 344 3588999999999999986 543
No 145
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=22.99 E-value=3.8e+02 Score=23.34 Aligned_cols=40 Identities=23% Similarity=0.101 Sum_probs=24.8
Q ss_pred ccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCC
Q 009859 211 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 253 (523)
Q Consensus 211 di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~ 253 (523)
.+..-|++|++...- ++ +-....++.+ +++|++++.|-..
T Consensus 128 ~~~~~DvvI~iS~SG-~t-~~~i~~~~~a-k~~G~~vIaIT~~ 167 (212)
T 2i2w_A 128 VGREGDVLLGISTSG-NS-ANVIKAIAAA-REKGMKVITLTGK 167 (212)
T ss_dssp HCCTTCEEEEECSSS-CC-HHHHHHHHHH-HHHTCEEEEEEET
T ss_pred cCCCCCEEEEEECCC-CC-HHHHHHHHHH-HHCCCeEEEEECC
Confidence 356678888876432 22 3344445555 4589999998654
No 146
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=22.88 E-value=55 Score=34.40 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=28.2
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.++++|+|+.|.+..... ..+..|+..+|.
T Consensus 204 i~~~~~~l~~a~rpvIl~G~g~~~~~------~~l~~lae~~~~ 241 (590)
T 1ybh_A 204 LEQIVRLISESKKPVLYVGGGCLNSS------DELGRFVELTGI 241 (590)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTTCH------HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCcEEEECcccccCH------HHHHHHHHHhCC
Confidence 35678899999999999999876542 455666766653
No 147
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=22.78 E-value=80 Score=32.90 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.6
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.++++|+|++|.+...... ...+..|+..+|.
T Consensus 199 i~~~~~~l~~a~rpvi~~G~g~~~~~a----~~~l~~lae~~~~ 238 (566)
T 2vbi_A 199 VDATVALLEKSASPVMLLGSKLRAANA----LAATETLADKLQC 238 (566)
T ss_dssp HHHHHHHHHTCSCEEEEECTTTTTTTC----HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCEEEECcCccccch----HHHHHHHHHHhCC
Confidence 457789999999999999998865432 3345556666543
No 148
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.43 E-value=1.9e+02 Score=24.41 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=23.0
Q ss_pred CCceEEEEcccCCcccCcceEEecCCCCCCC
Q 009859 374 NDAFVVYQGHHGDHGVYRANVILPASAFSEK 404 (523)
Q Consensus 374 ~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~ 404 (523)
....+...+...++.+++||++|...+..|.
T Consensus 123 g~~vi~IT~~~~s~la~~ad~~l~~~~~~e~ 153 (183)
T 2xhz_A 123 HVPLICITGRPESSMARAADVHLCVKVAKEA 153 (183)
T ss_dssp TCCEEEEESCTTSHHHHHSSEEEECCCSCCS
T ss_pred CCCEEEEECCCCChhHHhCCEEEEeCCCccc
Confidence 4566666666667788999999998876554
No 149
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=22.34 E-value=1.6e+02 Score=25.35 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=28.4
Q ss_pred Cccccc--cCCEEEEEcCCCC----cchhhHHHHHHHHHHhCCCeEEEEc
Q 009859 208 SISGLE--KADCFLLVGTQPR----VEAAMVNARIRKTVRANNAKVGYIG 251 (523)
Q Consensus 208 ~~~di~--~ad~il~~G~n~~----~~~p~~~~~lr~a~~~~g~klv~id 251 (523)
++.++. +.|.|++-|..+. ...+.+...++++.+ +|..|..|.
T Consensus 59 ~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~-~~k~i~aiC 107 (190)
T 4e08_A 59 SLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQES-GGGLIAAIC 107 (190)
T ss_dssp ETGGGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHH-TTCEEEEET
T ss_pred CHHHCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHH-CCCEEEEEC
Confidence 355553 5799999987421 123455667788765 788888775
No 150
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=22.00 E-value=77 Score=33.39 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=28.9
Q ss_pred cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 277 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 277 i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
+.++++.|.++++|+|++|.+. .. .....+..|+..+|.
T Consensus 233 i~~~~~~l~~A~rPvIl~G~g~-~~----~a~~~l~~lae~~~~ 271 (604)
T 2x7j_A 233 LSDVAEMLAEAEKGMIVCGELH-SD----ADKENIIALSKALQY 271 (604)
T ss_dssp GHHHHHHHHHCSSEEEEECCCC-CH----HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcCCeEEEECCCC-cH----HHHHHHHHHHHhcCc
Confidence 5677889999999999999886 31 234556677777654
No 151
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=21.98 E-value=22 Score=39.15 Aligned_cols=49 Identities=8% Similarity=-0.088 Sum_probs=38.2
Q ss_pred cCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc
Q 009859 214 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH 262 (523)
Q Consensus 214 ~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~ 262 (523)
+-+.++++|.||..+.|-....++++.++..--+||+|+..|.|+..+|
T Consensus 446 ~ik~l~i~g~Np~~s~p~~~~~~~~al~~~~~f~Vv~D~~~teTa~~AD 494 (802)
T 3ml1_A 446 KLNAYWVQVNNNMQAAANLMEEGLPGYRNPANFIVVSDAYPTVTALAAD 494 (802)
T ss_dssp SCCEEEEESCCHHHHSSCTTTTHHHHHHCTTCEEEEEESSCCHHHHTCS
T ss_pred CcEEEEEeCCCHHhcCCCccHHHHHHHhcCCCeEEEEeeccCchHhhCc
Confidence 5799999999999988876554677765222368999999999888776
No 152
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.96 E-value=3.6e+02 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=23.9
Q ss_pred cccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcC
Q 009859 212 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGP 252 (523)
Q Consensus 212 i~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp 252 (523)
+..-|++|++...-. .+-....++.+ +++|++++.|-.
T Consensus 108 ~~~~Dvvi~iS~sG~--t~~~~~~~~~a-k~~g~~vi~iT~ 145 (188)
T 1tk9_A 108 GNEKDVLIGISTSGK--SPNVLEALKKA-KELNMLCLGLSG 145 (188)
T ss_dssp CCTTCEEEEECSSSC--CHHHHHHHHHH-HHTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHH-HHCCCEEEEEeC
Confidence 556788888865432 23344445554 459999998854
No 153
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=21.32 E-value=13 Score=34.33 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.5
Q ss_pred CcccccccccccccCccc
Q 009859 35 TSELSGNVIDICPVGALT 52 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt 52 (523)
.|-.||.|+++||++++.
T Consensus 150 ~Ci~Cg~C~~~CP~~~~~ 167 (241)
T 2bs2_B 150 RCIECGCCIAACGTKIMR 167 (241)
T ss_dssp TCCCCCHHHHTCHHHHHC
T ss_pred hhhccCcCcccCCCCccC
Confidence 367899999999999874
No 154
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=21.22 E-value=1.1e+02 Score=24.38 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=33.4
Q ss_pred cccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCC
Q 009859 210 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 255 (523)
Q Consensus 210 ~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~ 255 (523)
..++.+++++++-.--....+....-+..|. +.|.+|+.|.|.-.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~-~~gkpIigV~~~g~ 78 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLAR-KSSKPIITVRPYGL 78 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHT-TTTCCEEEECCSSS
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHH-HcCCCEEEEEcCCC
Confidence 6788999988665444445566777787776 58999999998654
No 155
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=20.97 E-value=25 Score=32.20 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.3
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.|-.||.|+++||++++..
T Consensus 148 ~Ci~Cg~C~~~CP~~~~~~ 166 (238)
T 2wdq_B 148 ECILCACCSTSCPSFWWNP 166 (238)
T ss_dssp TCCCCCTTGGGCHHHHHCT
T ss_pred cccccCCchhhCcCCccCC
Confidence 4778999999999998754
No 156
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=20.81 E-value=21 Score=37.66 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=24.2
Q ss_pred ccccccccccccCcccc-cccccccccccceeeeeeeccCCC
Q 009859 37 ELSGNVIDICPVGALTS-KPFAFKARNWELKGTETIDVTDAV 77 (523)
Q Consensus 37 ~~~Gn~idvCPvGAlt~-k~~~~~aR~Wel~~~~siC~~C~~ 77 (523)
.+||-|+.+||+|++.- .. -...+..+..-..-|.+|+.
T Consensus 519 ~~~~~c~~~CPa~~~~~~~~--~~~~~~~~~i~~~~Ci~C~~ 558 (584)
T 2gmh_A 519 IYDGPEQRFCPAGVYEFVPL--EQGDGFRLQINAQNCVHCKT 558 (584)
T ss_dssp HHCCTHHHHCTTCCEEEEEC--SSTTCEEEEECGGGCCCCCH
T ss_pred hhcchhhhcCChhhEEEeec--CCCCceEEEEeCCCCcCCCC
Confidence 78899999999999954 11 00101124455566877763
No 157
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=20.66 E-value=24 Score=32.77 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=16.2
Q ss_pred CcccccccccccccCcccc
Q 009859 35 TSELSGNVIDICPVGALTS 53 (523)
Q Consensus 35 ~~~~~Gn~idvCPvGAlt~ 53 (523)
.|-.||.|+++||++++..
T Consensus 157 ~Ci~CG~C~~~CP~~~~~~ 175 (252)
T 2h88_B 157 ECILCACCSTSCPSYWWNG 175 (252)
T ss_dssp TCCCCCTTGGGCHHHHHHT
T ss_pred hchhhCcchhhCCCCccCC
Confidence 4778999999999998653
No 158
>3tyg_A Envelope glycoprotein GP160; GP120, HIV-1, ENV, FAB, HIV-1 neutralizing antibody, immune viral protein; HET: NAG BMA MAN; 3.25A {Human immunodeficiency virus 1}
Probab=20.32 E-value=1.2e+02 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=25.0
Q ss_pred EcCHHHHHHHHHHHHHhcC--CCCEEEEeCCCCcHHH
Q 009859 136 AVNWRDALAVVAEVMLQAK--PEEIVGIAGRLSDAES 170 (523)
Q Consensus 136 ~isWdeAl~~ia~~L~~~~--~~~i~~~~g~~~~~e~ 170 (523)
+..|.++|+.++++|++.- ...|.+-.+...++|-
T Consensus 124 ~t~Wn~tL~qV~~kL~e~f~~nktI~F~~ssGGD~EI 160 (199)
T 3tyg_A 124 RAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEI 160 (199)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCEEEECCCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEeCCCCCCCCce
Confidence 3569999999999999864 2456555455567763
No 159
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=20.15 E-value=21 Score=37.65 Aligned_cols=22 Identities=5% Similarity=-0.236 Sum_probs=18.5
Q ss_pred cCcccccccccccccCcccccc
Q 009859 34 MTSELSGNVIDICPVGALTSKP 55 (523)
Q Consensus 34 ~~~~~~Gn~idvCPvGAlt~k~ 55 (523)
-.|--||.|..+||+++++=..
T Consensus 551 ~~Ci~C~~C~~~cp~~~i~~~~ 572 (584)
T 2gmh_A 551 QNCVHCKTCDIKDPSQNINWVV 572 (584)
T ss_dssp GGCCCCCHHHHHCTTCCEEECC
T ss_pred CCCcCCCCchhhCCCCCceeEC
Confidence 3588899999999999996554
No 160
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.04 E-value=80 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859 278 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 320 (523)
Q Consensus 278 ~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~ 320 (523)
.++++.|.++++|+|++|.+..... ....+..|+..+|.
T Consensus 198 ~~~~~~l~~a~rpvil~G~g~~~~~----a~~~l~~lae~~~~ 236 (566)
T 1ozh_A 198 DQVAKLIAQAKNPIFLLGLMASQPE----NSKALRRLLETSHI 236 (566)
T ss_dssp HHHHHHHHHCSSEEEEECGGGGSGG----GHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCeEEEECCCccccc----HHHHHHHHHHHHCC
Confidence 4567889999999999999876432 23445566666543
Done!