Your job contains 1 sequence.
>009860
MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL
KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE
FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG
RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPASSSG
KETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSA
SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSP
NGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRR
SDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGRRA
ATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSGH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009860
(523 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2009026 - symbol:UPF3 species:3702 "Arabidopsi... 812 6.6e-81 1
ZFIN|ZDB-GENE-060721-2 - symbol:upf3a "UPF3 regulator of ... 257 2.4e-20 2
UNIPROTKB|Q2T9M5 - symbol:UPF3B "UPF3 regulator of nonsen... 230 1.5e-18 1
UNIPROTKB|E1BZ48 - symbol:UPF3B "Uncharacterized protein"... 237 2.3e-18 3
UNIPROTKB|F1NQA5 - symbol:UPF3B "Uncharacterized protein"... 235 4.1e-18 3
UNIPROTKB|J9NUU8 - symbol:UPF3B "Uncharacterized protein"... 230 9.2e-18 3
UNIPROTKB|F1PPT4 - symbol:UPF3B "Uncharacterized protein"... 230 1.4e-17 3
UNIPROTKB|E2R5F4 - symbol:UPF3A "Uncharacterized protein"... 241 2.4e-17 2
UNIPROTKB|F1RUA3 - symbol:LOC414433 "Uncharacterized prot... 230 2.4e-17 2
ZFIN|ZDB-GENE-040426-1630 - symbol:upf3b "UPF3 regulator ... 232 2.7e-17 2
UNIPROTKB|K7GSB3 - symbol:LOC414433 "Uncharacterized prot... 230 2.8e-17 2
UNIPROTKB|Q9BZI7 - symbol:UPF3B "Regulator of nonsense tr... 230 2.8e-17 2
UNIPROTKB|F1NA07 - symbol:UPF3A "Uncharacterized protein"... 231 3.1e-17 2
UNIPROTKB|E1BV08 - symbol:UPF3A "Uncharacterized protein"... 231 5.0e-17 2
UNIPROTKB|Q9H1J1 - symbol:UPF3A "Regulator of nonsense tr... 227 5.0e-16 2
UNIPROTKB|E1BGC9 - symbol:UPF3A "Uncharacterized protein"... 221 5.3e-16 2
RGD|1308778 - symbol:Upf3a "UPF3 regulator of nonsense tr... 222 1.1e-15 1
UNIPROTKB|D4A7D0 - symbol:Upf3a "Protein Upf3a" species:1... 222 1.2e-15 1
UNIPROTKB|I3LNG6 - symbol:UPF3A "Uncharacterized protein"... 217 1.5e-15 1
FB|FBgn0034923 - symbol:Upf3 "Upf3" species:7227 "Drosoph... 198 2.9e-14 3
POMBASE|SPAC13G7.03 - symbol:upf3 "up-frameshift suppress... 176 6.5e-13 2
ASPGD|ASPL0000056196 - symbol:AN0505 species:162425 "Emer... 161 9.2e-09 2
WB|WBGene00004882 - symbol:smg-4 species:6239 "Caenorhabd... 130 2.1e-05 1
CGD|CAL0003622 - symbol:orf19.5277 species:5476 "Candida ... 105 0.00082 2
>TAIR|locus:2009026 [details] [associations]
symbol:UPF3 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042742 "defense response
to bacterium" evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR012677 EMBL:CP002684
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC015446
eggNOG:NOG251520 KO:K14328 InterPro:IPR005120 Pfam:PF03467
IPI:IPI00890991 RefSeq:NP_001117406.1 UniGene:At.21064
ProteinModelPortal:B3H5N7 SMR:B3H5N7 STRING:B3H5N7 PaxDb:B3H5N7
PRIDE:B3H5N7 EnsemblPlants:AT1G33980.2 GeneID:840295
KEGG:ath:AT1G33980 TAIR:At1g33980 HOGENOM:HOG000006277 OMA:PLMEFIR
PhylomeDB:B3H5N7 ProtClustDB:CLSN2680357 Genevestigator:B3H5N7
Uniprot:B3H5N7
Length = 484
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 192/434 (44%), Positives = 251/434 (57%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKS--SYKHQRYSRAYV 58
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKS YK+Q+YSRAYV
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDY 118
K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDPDY
Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120
Query: 119 LEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLX 178
LEFLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYILKDSAKNARRKDKSTFTVVAKRED-QPAS 237
Y+ K+S+KN RK +T V + + D + ++
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRK--TTADVSSSKPDYRQSN 238
Query: 238 SSGKETSASETICGVEGSV-GIPLTSDTXXXXXXXXXXXEREIPHVPDALLDKQRESSPV 296
SSGKE +ET ++ S GI LT D+ +R+ P P ++ +++
Sbjct: 239 SSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLS 298
Query: 297 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 356
+NS T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K P
Sbjct: 299 RNS---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRP 355
Query: 357 TSSPNGHVTNNDSPIFSFDGNTKRSSD--DRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 414
++ G + I R+ D DR G+ + N + DR+
Sbjct: 356 ANTRAGKDYHTSGTISEKQERRTRNKDRPDR-VMWAPRRDGSEDQPLSSAGNNGEVKDRM 414
Query: 415 VWTPRRSDVSQANG 428
++ R +V ++G
Sbjct: 415 -FSQRSGEVVNSSG 427
Score = 197 (74.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 60/153 (39%), Positives = 77/153 (50%)
Query: 377 NTKRSSDDRFAR--KVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSS 434
N KR S R K H SG +SEKQE+RTRNKDRPDRV+W PRR +G S
Sbjct: 348 NYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR------DG---SED 398
Query: 435 QPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG-----GSHRHNGRRAATNITKDDG 489
QP LS + GE+KD M + ++ ++ + G GS RH+ RR K++
Sbjct: 399 QP---LSSAGN--NGEVKDRM-FSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEEV 452
Query: 490 CINMIEXXXXXXXXXXXXXXNEKQVWIQKSSSG 522
I E +EKQ+WIQK SSG
Sbjct: 453 VIG--EGKTSRRGSGGGPSSHEKQMWIQKPSSG 483
>ZFIN|ZDB-GENE-060721-2 [details] [associations]
symbol:upf3a "UPF3 regulator of nonsense transcripts
homolog A (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR012677 ZFIN:ZDB-GENE-060721-2
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028 EMBL:BX601644
EMBL:BC095761 IPI:IPI00929986 IPI:IPI00994670 RefSeq:NP_001189377.1
UniGene:Dr.91982 STRING:B0S733 Ensembl:ENSDART00000100728
Ensembl:ENSDART00000139608 GeneID:566608 KEGG:dre:566608 CTD:65110
eggNOG:NOG251520 GeneTree:ENSGT00390000017146 HOGENOM:HOG000230909
InParanoid:Q4VBI8 KO:K14328 NextBio:20888282 Bgee:B0S733
InterPro:IPR005120 Pfam:PF03467 Uniprot:B0S733
Length = 452
Score = 257 (95.5 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 64/176 (36%), Positives = 104/176 (59%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYVELKKPA 64
+KVVIR LPPSLS++ L ++H + +++F F P S Y H +SRAY+ K P
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSLYPHL-FSRAYINFKNPE 97
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLK 123
+ F + +G+VF++ KG ++ A+VE+AP Q+V K +KD++ GTI +DP+Y FL+
Sbjct: 98 DIIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLE 157
Query: 124 VIAKPAE-NLPSAEI---QLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 175
+ E ++ + E ++E K EL K T TPL+EY++ K+ + +E
Sbjct: 158 NYSCDEEKSMANPETLLGEIEAKTRELIA--KRT---TPLLEYIKNKKLEKQRIRE 208
Score = 46 (21.3 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 401 QEKRTRNKDRPDRVVWTP-RRSDVSQANGERLSSSQP 436
+++R RNKDRP ++ P R+ +G + P
Sbjct: 391 RKERIRNKDRPAMQLYQPGARNRKRMGSGNKTFDFPP 427
Score = 40 (19.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 376 GNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDR 413
G+TK S D + R + E +R R+KD R
Sbjct: 292 GHTK-SKDSKDNRSQMENDKEQREGHGRRQRDKDHRGR 328
Score = 39 (18.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 379 KRSSDDRFARKVLHGSGAVSEKQEK-RTRNK-DRPDRV 414
KR ++R RK +SEK+ K + K DR D V
Sbjct: 231 KRREEERQKRKEAEKQKKLSEKEIKIKLLKKCDRDDDV 268
>UNIPROTKB|Q2T9M5 [details] [associations]
symbol:UPF3B "UPF3 regulator of nonsense transcripts
homolog B (Yeast)" species:9913 "Bos taurus" [GO:0045727 "positive
regulation of translation" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045727 GO:GO:0035145 eggNOG:NOG251520
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 HOVERGEN:HBG059714 CTD:65109 EMBL:DAAA02067145
EMBL:DAAA02067146 EMBL:BC111353 IPI:IPI00698558
RefSeq:NP_001069879.1 UniGene:Bt.89290 SMR:Q2T9M5
Ensembl:ENSBTAT00000027792 GeneID:616181 KEGG:bta:616181
OMA:SCRDYRD NextBio:20900002 Uniprot:Q2T9M5
Length = 307
Score = 230 (86.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+
Sbjct: 47 KEAL--SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHM-YARAYI 99
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K + F + +G+VF++ KG ++ AIVE+AP Q+ K ++K D++ GTI DP+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPE 159
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGA-PKETLVVTPLMEYVRQK-RAAESGAQ 174
Y +FL+ A E + S E LE EA+ K+T TPL+ +++ K R E +
Sbjct: 160 YRKFLESYAADNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKRE 216
Query: 175 E 175
E
Sbjct: 217 E 217
>UNIPROTKB|E1BZ48 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
EMBL:AADN02013623 IPI:IPI00819644 Ensembl:ENSGALT00000014041
ArrayExpress:E1BZ48 Uniprot:E1BZ48
Length = 478
Score = 237 (88.5 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 68/182 (37%), Positives = 101/182 (55%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPPSL++ L +H +++F F SS Y H +SRAY+
Sbjct: 51 KETL--SKVVIRRLPPSLTREQL----EEHLQPLPEHDYFEFFANDSSLYPHV-FSRAYI 103
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
+ + F + +G+VFV+ KG+++ AIVE+AP Q+ K S+K D++ GTI DP+
Sbjct: 104 NFRNQEDIVLFRDRFDGYVFVDHKGSEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPE 163
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK-RAAESGA 173
Y +FL+ + E L S E LE EA KE + TPL+ +++ K R E
Sbjct: 164 YKKFLESYSADDEKLTSTPETLLEEIEAR----NKELIAKKTTPLLNFLKNKQRLREEKR 219
Query: 174 QE 175
+E
Sbjct: 220 EE 221
Score = 44 (20.5 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 404 RTRNKDRPDRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDD 454
R RNKDRP ++ P RS E ++ Q E MK++
Sbjct: 426 RIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKSTDQGAEKKQESESSNMKEE 477
Score = 43 (20.2 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 211 KDSAKNARRKDKST-FTVVAKREDQPASSSGKETSASET 248
KD K+ +K+KS RE++ ASS+ + S ET
Sbjct: 282 KDE-KDLEKKEKSKKLEKETLREEKNASSASAKRSDGET 319
Score = 39 (18.8 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 211 KDSAKNARRKDKSTFTVVAKREDQPASSSGKETSASETI 249
K K R++K+ + AKR D + S E +
Sbjct: 294 KKLEKETLREEKNASSASAKRSDGETKEEKAKKSEDECV 332
Score = 38 (18.4 bits), Expect = 7.4e-18, Sum P(3) = 7.4e-18
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 212 DSAKNARRKDKSTFTVVAKREDQPASSSGKETSASETICGVEGS 255
+ K RRK++ K+E GK++ ++ CG++ S
Sbjct: 371 EKEKVFRRKEEEM-----KKERDLLRDKGKKSDLTDFTCGMDKS 409
>UNIPROTKB|F1NQA5 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR012677 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045727 GO:GO:0035145
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 CTD:65109 OMA:HLFARAY EMBL:AADN02013623
IPI:IPI00575279 RefSeq:XP_003641170.1 UniGene:Gga.22099
Ensembl:ENSGALT00000039073 GeneID:100858231 KEGG:gga:100858231
ArrayExpress:F1NQA5 Uniprot:F1NQA5
Length = 478
Score = 235 (87.8 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 68/182 (37%), Positives = 100/182 (54%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPPSL++ L +H +++F F SS Y H +SRAY+
Sbjct: 51 KETL--SKVVIRRLPPSLTREQL----EEHLQPLPEHDYFEFFANDSSLYPHV-FSRAYI 103
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
+ + F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K D++ GTI DP+
Sbjct: 104 NFRNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPE 163
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK-RAAESGA 173
Y +FL+ + E L S E LE EA KE + TPL+ +++ K R E
Sbjct: 164 YKKFLESYSADDEKLTSTPETLLEEIEAR----NKELIAKKTTPLLNFLKNKQRLREEKR 219
Query: 174 QE 175
+E
Sbjct: 220 EE 221
Score = 44 (20.5 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 404 RTRNKDRPDRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDD 454
R RNKDRP ++ P RS E ++ Q E MK++
Sbjct: 426 RIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKSTDQGAEKKQESESSNMKEE 477
Score = 43 (20.2 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 211 KDSAKNARRKDKST-FTVVAKREDQPASSSGKETSASET 248
KD K+ +K+KS RE++ ASS+ + S ET
Sbjct: 282 KDE-KDLEKKEKSKKLEKETLREEKNASSASAKRSDGET 319
Score = 39 (18.8 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 211 KDSAKNARRKDKSTFTVVAKREDQPASSSGKETSASETI 249
K K R++K+ + AKR D + S E +
Sbjct: 294 KKLEKETLREEKNASSASAKRSDGETKEEKAKKSEDECV 332
Score = 38 (18.4 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 212 DSAKNARRKDKSTFTVVAKREDQPASSSGKETSASETICGVEGS 255
+ K RRK++ K+E GK++ ++ CG++ S
Sbjct: 371 EKEKVFRRKEEEM-----KKERDLLRDKGKKSDLTDFTCGMDKS 409
>UNIPROTKB|J9NUU8 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
EMBL:AAEX03026831 Ensembl:ENSCAFT00000049933 Uniprot:J9NUU8
Length = 457
Score = 230 (86.0 bits), Expect = 9.2e-18, Sum P(3) = 9.2e-18
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+
Sbjct: 47 KEAL--SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHM-YARAYI 99
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K + F + +G+VF++ KG ++ AIVE+AP Q+ K ++K D++ GTI DP+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPE 159
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGA-PKETLVVTPLMEYVRQK-RAAESGAQ 174
Y +FL+ A E + S E LE EA+ K+T TPL+ +++ K R E +
Sbjct: 160 YRKFLESYAADNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKRE 216
Query: 175 E 175
E
Sbjct: 217 E 217
Score = 50 (22.7 bits), Expect = 9.2e-18, Sum P(3) = 9.2e-18
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 393 GSGAVSEKQEK-----RTRNKDRPDRVVWTP 418
GS +EK+E+ R RNKDRP ++ P
Sbjct: 399 GSSEKTEKKEEVVKRDRIRNKDRPAMQLYQP 429
Score = 44 (20.5 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 21/99 (21%), Positives = 40/99 (40%)
Query: 320 KILLNNETRQTQSVTGVQPQQKM--QNLNQE--NGKPLPGPTSSPNGHVTNNDSPIFSFD 375
K+L E + + + +K+ +NLN E +G+ P S
Sbjct: 269 KLLKKPEKGDEKELDKREKAKKLDKENLNDERASGQSCTLPKRSDGEPKDEKPRRPEEES 328
Query: 376 GNTKRSSD-DRFARKVLHGSGAVSEKQEKRTRNKDRPDR 413
G R D +R ++L + ++E+R R K+R ++
Sbjct: 329 GRDYRERDYERDQERILRERERLKRQEEERRRQKERYEK 367
Score = 38 (18.4 bits), Expect = 9.2e-18, Sum P(3) = 9.2e-18
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 230 KREDQPASSSGKETSASETI 249
K+E + GK+T ++E++
Sbjct: 379 KKEKEVVRDKGKKTESTESV 398
>UNIPROTKB|F1PPT4 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 CTD:65109 OMA:HLFARAY EMBL:AAEX03026831
RefSeq:XP_851843.1 ProteinModelPortal:F1PPT4
Ensembl:ENSCAFT00000029261 GeneID:481031 KEGG:cfa:481031
Uniprot:F1PPT4
Length = 481
Score = 230 (86.0 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+
Sbjct: 47 KEAL--SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHM-YARAYI 99
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K + F + +G+VF++ KG ++ AIVE+AP Q+ K ++K D++ GTI DP+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPE 159
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGA-PKETLVVTPLMEYVRQK-RAAESGAQ 174
Y +FL+ A E + S E LE EA+ K+T TPL+ +++ K R E +
Sbjct: 160 YRKFLESYAADNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKRE 216
Query: 175 E 175
E
Sbjct: 217 E 217
Score = 50 (22.7 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 393 GSGAVSEKQEK-----RTRNKDRPDRVVWTP 418
GS +EK+E+ R RNKDRP ++ P
Sbjct: 412 GSSEKTEKKEEVVKRDRIRNKDRPAMQLYQP 442
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 17/74 (22%), Positives = 30/74 (40%)
Query: 343 QNLNQE--NGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSD-DRFARKVLHGSGAVSE 399
+NLN E +G+ P S G R D +R ++L +
Sbjct: 307 ENLNDERASGQSCTLPKRSDGEPKDEKPRRPEEESGRDYRERDYERDQERILRERERLKR 366
Query: 400 KQEKRTRNKDRPDR 413
++E+R R K+R ++
Sbjct: 367 QEEERRRQKERYEK 380
Score = 38 (18.4 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 230 KREDQPASSSGKETSASETI 249
K+E + GK+T ++E++
Sbjct: 392 KKEKEVVRDKGKKTESTESV 411
>UNIPROTKB|E2R5F4 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
OMA:PDRGKKG EMBL:AAEX03013416 Ensembl:ENSCAFT00000010502
Uniprot:E2R5F4
Length = 463
Score = 241 (89.9 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 60/180 (33%), Positives = 98/180 (54%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSS-YKHQRYSRAYVEL 60
+E +KVVIR LPP L++ L H +++F F P S Y H YSRAY+
Sbjct: 61 EEKTALSKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFPADLSLYPHL-YSRAYINF 117
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYL 119
+ P + F + +G++F++ KG ++ A+VE+AP Q++ K +KD++ G+I DP+Y
Sbjct: 118 RNPEDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYK 177
Query: 120 EFLKVIA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 175
+FL+ KP N + +E K EL + T TPL+EY+R ++ + +E
Sbjct: 178 KFLETYCVEEEKPNTNPETLLGDIEAKTRELIA--RRT---TPLLEYIRNRKLEKQRIRE 232
Score = 37 (18.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 392 HGS-GAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLS 432
H S G ++ E R NKD P ++ P +Q +G +S
Sbjct: 416 HKSEGGLAPSME-RPGNKDLPALQLYQPEAHIRAQESGGGIS 456
>UNIPROTKB|F1RUA3 [details] [associations]
symbol:LOC414433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR012677 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045727 GO:GO:0035145
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 OMA:HLFARAY EMBL:CU929805 RefSeq:XP_003135388.1
UniGene:Ssc.22179 Ensembl:ENSSSCT00000013796 GeneID:414433
KEGG:ssc:414433 Uniprot:F1RUA3
Length = 470
Score = 230 (86.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+
Sbjct: 47 KEAL--SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHM-YARAYI 99
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K + F + +G+VF++ KG ++ AIVE+AP Q+ K ++K D++ GTI DP+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPE 159
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGA-PKETLVVTPLMEYVRQK-RAAESGAQ 174
Y +FL+ A E + S E LE EA+ K+T TPL+ +++ K R E +
Sbjct: 160 YRKFLESYAADNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKRE 216
Query: 175 E 175
E
Sbjct: 217 E 217
Score = 50 (22.7 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 393 GSGAVSEKQEK-----RTRNKDRPDRVVWTP 418
GS +EK+E+ R RNKDRP ++ P
Sbjct: 401 GSSEKTEKKEEVVKRDRIRNKDRPAMQLYQP 431
Score = 46 (21.3 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 25/129 (19%), Positives = 59/129 (45%)
Query: 339 QQKMQNLNQEN--GKPLPGPTSS----PNGHVTNNDSPIFSFDGNTK----RSSD-DRFA 387
++K++ L++EN + G T + P+G ++ P D +++ R D +R
Sbjct: 285 REKVKKLDKENLSDERASGQTCTLPKRPDGEF-KDEKPKRPEDESSRDYRERERDYERDQ 343
Query: 388 RKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERL-SSSQPTQLLSDSVEV 446
++L + ++E+R R K+R ++ R+ + + E L ++ T+
Sbjct: 344 ERILRERERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKEALRDKAKKTESTEPVGSS 403
Query: 447 TRGEMKDDM 455
+ E K+++
Sbjct: 404 EKTEKKEEV 412
>ZFIN|ZDB-GENE-040426-1630 [details] [associations]
symbol:upf3b "UPF3 regulator of nonsense
transcripts homolog B (yeast)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
ZFIN:ZDB-GENE-040426-1630 GO:GO:0000166 Gene3D:3.30.70.330
HOGENOM:HOG000230909 KO:K14328 InterPro:IPR005120 Pfam:PF03467
HOVERGEN:HBG059714 CTD:65109 OrthoDB:EOG4001K9 EMBL:BC055632
EMBL:FM986820 IPI:IPI00489976 RefSeq:NP_957248.1 UniGene:Dr.13796
SMR:Q7SXF0 STRING:Q7SXF0 GeneID:393929 KEGG:dre:393929
InParanoid:Q7SXF0 NextBio:20814901 Uniprot:Q7SXF0
Length = 467
Score = 232 (86.7 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 63/172 (36%), Positives = 97/172 (56%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPP+L++ DL + Y F F S + H ++RAY+ K +
Sbjct: 37 TKIVIRRLPPTLTKEDLEEQLQPLPELDYLEF-FSSDTSLFPHL-FARAYLNFKNQDDIV 94
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++ +G ++ AIVE+AP Q+V K S+K D++ GTI D DY +FL+
Sbjct: 95 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKVAKKRSKKKDAKSGTIDDDADYKKFLEFYN 154
Query: 127 KPAENLPS-AEIQLERKEAELSG-APKETLVVTPLMEYVRQK-RAAESGAQE 175
E PS EI LE EA+ + K+T TPL+++++ K R E +E
Sbjct: 155 GDEEKSPSNPEILLEEIEAKTKELSSKKT---TPLLDFLKNKQRIREEKKEE 203
Score = 47 (21.6 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 377 NTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANG 428
+T SS K S ++ R RNKDRP ++ P + ++ G
Sbjct: 387 HTGESSGSARPEKSSRDSKKEESARKDRLRNKDRPAIQLYQPGSRNRTRGGG 438
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 375 DGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSS 434
DG +R D R+ + + E+R R ++ D +R + + + ER+
Sbjct: 324 DGERERDRDRERERRQKEKE-RIRRQDEERRRRREHQDGENTYRKREEEGKKDKERVWEK 382
Query: 435 QPTQLLSDSVEVTRGE 450
+ + +S R E
Sbjct: 383 RKNEHTGESSGSARPE 398
>UNIPROTKB|K7GSB3 [details] [associations]
symbol:LOC414433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 Gene3D:3.30.70.330 GeneTree:ENSGT00390000017146
InterPro:IPR005120 Pfam:PF03467 EMBL:CU929805 GeneID:414433
RefSeq:XP_003135389.1 Ensembl:ENSSSCT00000035250 Uniprot:K7GSB3
Length = 483
Score = 230 (86.0 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+
Sbjct: 47 KEAL--SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHM-YARAYI 99
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K + F + +G+VF++ KG ++ AIVE+AP Q+ K ++K D++ GTI DP+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPE 159
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGA-PKETLVVTPLMEYVRQK-RAAESGAQ 174
Y +FL+ A E + S E LE EA+ K+T TPL+ +++ K R E +
Sbjct: 160 YRKFLESYAADNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKRE 216
Query: 175 E 175
E
Sbjct: 217 E 217
Score = 50 (22.7 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 393 GSGAVSEKQEK-----RTRNKDRPDRVVWTP 418
GS +EK+E+ R RNKDRP ++ P
Sbjct: 414 GSSEKTEKKEEVVKRDRIRNKDRPAMQLYQP 444
Score = 46 (21.3 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 25/129 (19%), Positives = 59/129 (45%)
Query: 339 QQKMQNLNQEN--GKPLPGPTSS----PNGHVTNNDSPIFSFDGNTK----RSSD-DRFA 387
++K++ L++EN + G T + P+G ++ P D +++ R D +R
Sbjct: 298 REKVKKLDKENLSDERASGQTCTLPKRPDGEF-KDEKPKRPEDESSRDYRERERDYERDQ 356
Query: 388 RKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERL-SSSQPTQLLSDSVEV 446
++L + ++E+R R K+R ++ R+ + + E L ++ T+
Sbjct: 357 ERILRERERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKEALRDKAKKTESTEPVGSS 416
Query: 447 TRGEMKDDM 455
+ E K+++
Sbjct: 417 EKTEKKEEV 425
>UNIPROTKB|Q9BZI7 [details] [associations]
symbol:UPF3B "Regulator of nonsense transcripts 3B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR012677 GO:GO:0005829 GO:GO:0005654
GO:GO:0000184 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 Orphanet:777 GO:GO:0006406 GO:GO:0045727
GO:GO:0000398 Reactome:REACT_1788 Orphanet:323 GO:GO:0035145
PDB:2XB2 PDBsum:2XB2 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
EMBL:CH471161 Orphanet:776 GO:GO:0005487 eggNOG:NOG251520
HOGENOM:HOG000230909 KO:K14328 InterPro:IPR005120 Pfam:PF03467
HOVERGEN:HBG059714 EMBL:AY013251 EMBL:AF318576 EMBL:BC121017
IPI:IPI00023409 IPI:IPI00074183 RefSeq:NP_075386.1
RefSeq:NP_542199.1 UniGene:Hs.103832 PDB:1UW4 PDBsum:1UW4
ProteinModelPortal:Q9BZI7 SMR:Q9BZI7 DIP:DIP-31143N IntAct:Q9BZI7
MINT:MINT-265168 STRING:Q9BZI7 PhosphoSite:Q9BZI7 DMDM:60390643
PaxDb:Q9BZI7 PRIDE:Q9BZI7 Ensembl:ENST00000276201
Ensembl:ENST00000345865 GeneID:65109 KEGG:hsa:65109 UCSC:uc004erz.2
UCSC:uc004esa.2 CTD:65109 GeneCards:GC0XM118967 HGNC:HGNC:20439
HPA:HPA001800 HPA:HPA001882 MIM:300298 MIM:300676
neXtProt:NX_Q9BZI7 PharmGKB:PA128394708 InParanoid:Q9BZI7
OMA:HLFARAY OrthoDB:EOG4001K9 PhylomeDB:Q9BZI7 ChiTaRS:UPF3B
EvolutionaryTrace:Q9BZI7 GenomeRNAi:65109 NextBio:67302
ArrayExpress:Q9BZI7 Bgee:Q9BZI7 CleanEx:HS_UPF3B
Genevestigator:Q9BZI7 GermOnline:ENSG00000125351 Uniprot:Q9BZI7
Length = 483
Score = 230 (86.0 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSS-YKHQRYSRAYV 58
KE L +KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+
Sbjct: 47 KEAL--SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHM-YARAYI 99
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K + F + +G+VF++ KG ++ AIVE+AP Q+ K ++K D++ GTI DP+
Sbjct: 100 NFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPE 159
Query: 118 YLEFLKVIAKPAENLPSA-EIQLERKEAELSGA-PKETLVVTPLMEYVRQK-RAAESGAQ 174
Y +FL+ A E + S E LE EA+ K+T TPL+ +++ K R E +
Sbjct: 160 YRKFLESYATDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKRE 216
Query: 175 E 175
E
Sbjct: 217 E 217
Score = 50 (22.7 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 393 GSGAVSEKQEK-----RTRNKDRPDRVVWTP 418
GS +EK+E+ R RNKDRP ++ P
Sbjct: 414 GSSEKTEKKEEVVKRDRIRNKDRPAMQLYQP 444
Score = 41 (19.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 34/154 (22%), Positives = 59/154 (38%)
Query: 306 KQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPN---- 361
K++ +RE +L ++ L ++E QS T P++ L E K P S +
Sbjct: 293 KELDKREKAKKLDKENL-SDERASGQSCT--LPKRSDSELKDEKPKR-PEDESGRDYRER 348
Query: 362 -GHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAV-SEKQEKRTRNKDRPDRVVWTPR 419
+ I KR ++R +K + K+E+ + KD T R
Sbjct: 349 EREYERDQERILRERERLKRQEEERRRQKERYEKEKTFKRKEEEMKKEKD-------TLR 401
Query: 420 RSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKD 453
+ E + SS+ T+ + V+ R KD
Sbjct: 402 DKGKKAESTESIGSSEKTEKKEEVVKRDRIRNKD 435
>UNIPROTKB|F1NA07 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
EMBL:AADN02017912 IPI:IPI00818750 Ensembl:ENSGALT00000036566
Uniprot:F1NA07
Length = 440
Score = 231 (86.4 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 57/173 (32%), Positives = 93/173 (53%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L Y FC S Y H YSRAY+ + P +
Sbjct: 7 SKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFC-TADPSLYPHL-YSRAYINFRNPEDIL 64
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 65 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYC 124
Query: 127 KPAENL---PSAEI-QLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 175
E + P + ++E K EL + T TPL+EY++ ++ + +E
Sbjct: 125 ADEEKICANPETLLGEIEAKTRELIA--RRT---TPLLEYIKNRKLEKQRIRE 172
Score = 46 (21.3 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 397 VSEKQEKRTRNKDRPDRVVWTP 418
++ K+E R RNKDRP ++ P
Sbjct: 379 MASKKE-RIRNKDRPAMQLYQP 399
Score = 41 (19.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 379 KRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSD 422
KR ++R RK +SEK+ + ++++ P + D
Sbjct: 195 KRREEERRKRKEAEKHKKISEKEVNSKTSSVPKEKLLKKPEKGD 238
>UNIPROTKB|E1BV08 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR012677 GO:GO:0005886
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045727
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
OMA:PDRGKKG EMBL:AADN02017912 IPI:IPI00576551
Ensembl:ENSGALT00000027147 Uniprot:E1BV08
Length = 476
Score = 231 (86.4 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 57/173 (32%), Positives = 93/173 (53%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L Y FC S Y H YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFC-TADPSLYPHL-YSRAYINFRNPEDIL 124
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 125 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYC 184
Query: 127 KPAENL---PSAEI-QLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 175
E + P + ++E K EL + T TPL+EY++ ++ + +E
Sbjct: 185 ADEEKICANPETLLGEIEAKTRELIA--RRT---TPLLEYIKNRKLEKQRIRE 232
Score = 46 (21.3 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 397 VSEKQEKRTRNKDRPDRVVWTP 418
++ K+E R RNKDRP ++ P
Sbjct: 423 MASKKE-RIRNKDRPAMQLYQP 443
Score = 43 (20.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 379 KRSSDDRFARKVLHGSGAVSEKQE--KRTRNKDRPDRVVWTPRRSDVSQANGERLS---S 433
KR ++R RK +SEK+ K + ++ D + +A+ E S
Sbjct: 255 KRREEERRKRKEAEKHKKISEKEIRIKLLKKPEKGDEPASEKHKEKDEEADTEENKWDKS 314
Query: 434 SQPTQLLSDSVEVTRGEMKD 453
P + S S+E + E+K+
Sbjct: 315 PGPGSIRSKSLEGSLKELKE 334
>UNIPROTKB|Q9H1J1 [details] [associations]
symbol:UPF3A "Regulator of nonsense transcripts 3A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;TAS] [GO:0005737 "cytoplasm" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=NAS] [GO:0035145
"exon-exon junction complex" evidence=IDA;TAS] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=NAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR012677 GO:GO:0005829 GO:GO:0005886
GO:GO:0005634 GO:GO:0010467 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471085 GO:GO:0045727
GO:GO:0051028 EMBL:AL160396 GO:GO:0005487 CTD:65110
eggNOG:NOG251520 KO:K14328 InterPro:IPR005120 Pfam:PF03467
EMBL:AY013250 EMBL:BC008694 EMBL:BC023569 EMBL:AF318575
IPI:IPI00011138 IPI:IPI00082830 IPI:IPI00552066 RefSeq:NP_075387.1
RefSeq:NP_542418.1 UniGene:Hs.533855 PDB:2L08 PDBsum:2L08
ProteinModelPortal:Q9H1J1 SMR:Q9H1J1 DIP:DIP-31146N IntAct:Q9H1J1
MINT:MINT-1417517 STRING:Q9H1J1 PhosphoSite:Q9H1J1 DMDM:60390646
PaxDb:Q9H1J1 PRIDE:Q9H1J1 Ensembl:ENST00000351487
Ensembl:ENST00000375299 GeneID:65110 KEGG:hsa:65110 UCSC:uc001vup.3
UCSC:uc001vuq.3 GeneCards:GC13P115047 HGNC:HGNC:20332 HPA:HPA018325
MIM:605530 neXtProt:NX_Q9H1J1 PharmGKB:PA134961553
HOVERGEN:HBG059714 InParanoid:Q9H1J1 OMA:PDRGKKG OrthoDB:EOG4DNF53
PhylomeDB:Q9H1J1 ChiTaRS:UPF3A EvolutionaryTrace:Q9H1J1
GenomeRNAi:65110 NextBio:67308 ArrayExpress:Q9H1J1 Bgee:Q9H1J1
CleanEx:HS_UPF3A Genevestigator:Q9H1J1 GermOnline:ENSG00000169062
Uniprot:Q9H1J1
Length = 476
Score = 227 (85.0 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 56/171 (32%), Positives = 91/171 (53%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQE 175
E SA E E+ +E + TPL+EY++ ++ + +E
Sbjct: 186 VEEEKT-SANP--ETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIRE 233
Score = 41 (19.5 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 401 QEKRTRNKDRPDRVVWTP-RRSDVSQANGER 430
+++R NKDRP ++ P R + G R
Sbjct: 427 RKERLANKDRPALQLYDPGARFRARECGGNR 457
>UNIPROTKB|E1BGC9 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
GO:GO:0005886 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045727
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
OMA:PDRGKKG EMBL:DAAA02034959 IPI:IPI00691542
Ensembl:ENSBTAT00000027791 Uniprot:E1BGC9
Length = 510
Score = 221 (82.9 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 53/174 (30%), Positives = 93/174 (53%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWF-CFRPGKSSYKHQRYSRAYVELKKPAGV 66
+KVVIR LPPSL++ L H +++F F S Y H YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSLYPHL-YSRAYINFRNPDDI 123
Query: 67 FEFAELLNGHVFVNEK--GAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLK 123
F + +G++F++ K G ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 124 LLFRDRFDGYIFIDSKVKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLE 183
Query: 124 VIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQE 175
E + E ++ +E + TPL+EY++ ++ + +E
Sbjct: 184 TYCVEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEKQRIRE 234
Score = 49 (22.3 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 401 QEKRTRNKDRPDRVVWTPR 419
+++RT NKDRP ++ PR
Sbjct: 424 RKERTGNKDRPGLQLYQPR 442
Score = 41 (19.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 379 KRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDV 423
K++++ +K G +EK ++R D P W P S V
Sbjct: 273 KKTAEKELLKKPEKGEEPSTEKPKERAEETD-PGDGKWEPCPSAV 316
>RGD|1308778 [details] [associations]
symbol:Upf3a "UPF3 regulator of nonsense transcripts homolog A
(yeast)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0045727 "positive regulation of translation"
evidence=IEA;ISO] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0035145 "exon-exon junction complex"
evidence=ISO] InterPro:IPR012677 RGD:1308778 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH473970 CTD:65110 eggNOG:NOG251520
GeneTree:ENSGT00390000017146 HOGENOM:HOG000230909 KO:K14328
InterPro:IPR005120 Pfam:PF03467 HOVERGEN:HBG059714
OrthoDB:EOG4DNF53 EMBL:BC088463 IPI:IPI00951718
RefSeq:NP_001012159.1 UniGene:Rn.56460 SMR:Q5I0C8 STRING:Q5I0C8
Ensembl:ENSRNOT00000066521 GeneID:361176 KEGG:rno:361176
UCSC:RGD:1308778 InParanoid:Q5I0C8 NextBio:675441
Genevestigator:Q5I0C8 Uniprot:Q5I0C8
Length = 405
Score = 222 (83.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 52/172 (30%), Positives = 92/172 (53%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWF-CFRPGKSSYKHQRYSRAYVELKKPAGV 66
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHL-YSRAYINFRNPDDI 122
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLKVI 125
F + +G++F+ KG ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 123 LLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLESY 182
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQE 175
+ E ++ E E+ +E L TPL+EY++ ++ + +E
Sbjct: 183 SLEEEKTSASP---ETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLRE 231
>UNIPROTKB|D4A7D0 [details] [associations]
symbol:Upf3a "Protein Upf3a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 RGD:1308778 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045727 InterPro:IPR005120 Pfam:PF03467
IPI:IPI00364680 Ensembl:ENSRNOT00000023552 ArrayExpress:D4A7D0
Uniprot:D4A7D0
Length = 406
Score = 222 (83.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 52/172 (30%), Positives = 92/172 (53%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWF-CFRPGKSSYKHQRYSRAYVELKKPAGV 66
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHL-YSRAYINFRNPDDI 122
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLKVI 125
F + +G++F+ KG ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 123 LLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLESY 182
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQE 175
+ E ++ E E+ +E L TPL+EY++ ++ + +E
Sbjct: 183 SLEEEKTSASP---ETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLRE 231
>UNIPROTKB|I3LNG6 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
Ensembl:ENSSSCT00000030947 OMA:SSCRSAG Uniprot:I3LNG6
Length = 333
Score = 217 (81.4 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 53/173 (30%), Positives = 91/173 (52%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPPSL++ L + Y F F S Y H YSRAY+ + P +
Sbjct: 63 SKVVVRRLPPSLTREQLEEQLQPLPAHDYFEF-FTADLSLYPHL-YSRAYINFRNPDDIL 120
Query: 68 EFAELLNGHVFVNEK--GAQFKAIVEYAPSQRVPKP-FSRKDSREGTIFKDPDYLEFLKV 124
F + +G++F++ K G ++ A+VE+AP Q++ K +KD++ G+I DP+Y +FL+
Sbjct: 121 LFRDRFDGYIFIDSKVKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYKKFLET 180
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQE 175
E A E ++ +E + TPL+EY++ ++ + +E
Sbjct: 181 YCVEEEK---ASANPETLLGDVEAKTRELIARRTTPLLEYIKNRKLEKQRIRE 230
>FB|FBgn0034923 [details] [associations]
symbol:Upf3 "Upf3" species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0035195 "gene silencing by miRNA"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR012677 EMBL:AE013599 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00390000017146 KO:K14328
InterPro:IPR005120 Pfam:PF03467 OMA:SRPSRAY FlyBase:FBgn0034923
RefSeq:NP_726375.1 UniGene:Dm.31014 ProteinModelPortal:Q9W1H3
SMR:Q9W1H3 IntAct:Q9W1H3 MINT:MINT-745473 STRING:Q9W1H3
EnsemblMetazoa:FBtr0072221 GeneID:37792 KEGG:dme:Dmel_CG11184
UCSC:CG11184-RB CTD:37792 InParanoid:Q9W1H3 PhylomeDB:Q9W1H3
GenomeRNAi:37792 NextBio:805430 ArrayExpress:Q9W1H3 Bgee:Q9W1H3
Uniprot:Q9W1H3
Length = 492
Score = 198 (74.8 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 54/167 (32%), Positives = 90/167 (53%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSYKHQRYSRAYVELK-KP 63
Q K+V+RHLPP++++ L ND Y ++C S + RAY+++ K
Sbjct: 28 QIVKIVMRHLPPTMTEAQFLDQVGPLPENDSY-YYC--KADWSLGQEATCRAYIDMSSKD 84
Query: 64 AG-VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIFKDPDYLEF 121
G V +F + +G+VFV+ KG ++ AIVEYAP Q K +R D S+ TI +P Y EF
Sbjct: 85 IGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHYQEF 144
Query: 122 LKVIAKPAENLPS-AEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
+K +A+ E +++++ +E + TPL++Y+ K+
Sbjct: 145 IKRLAQEREEASRMGDVKID---FNFERRTEEKVKSTPLLQYLANKK 188
Score = 57 (25.1 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 401 QEKRTRNKDRPDRVVWTPR 419
+E+R RNKDRP ++ P+
Sbjct: 405 EERRIRNKDRPSIAIYQPK 423
Score = 51 (23.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 26/109 (23%), Positives = 49/109 (44%)
Query: 375 DGNTKRSSDDRF-ARKVLHGSGAVSEK--QEKRTRNKD-RPDRVVWTPRRSDVSQANGER 430
D N +R ++++ + +L EK +E R RN++ R R R +Q++ +
Sbjct: 164 DFNFERRTEEKVKSTPLLQYLANKKEKRREEARRRNEEKRKQREEQKLLRL-AAQSDASK 222
Query: 431 LSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGRR 479
L ++ D+ + + ++KD S GS+ D A S + RR
Sbjct: 223 LKEAEGGGGGGDTKKPAKKDVKDPQSSGSQANDAKASRSKRRTERDQRR 271
Score = 37 (18.1 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 289 KQRESSPVKNSASPTVPKQIQRREAGG 315
KQRE + A+ + +++ E GG
Sbjct: 204 KQREEQKLLRLAAQSDASKLKEAEGGG 230
>POMBASE|SPAC13G7.03 [details] [associations]
symbol:upf3 "up-frameshift suppressor 3 family protein
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
InterPro:IPR012677 PomBase:SPAC13G7.03 GO:GO:0005737 EMBL:CU329670
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
KO:K14328 InterPro:IPR005120 Pfam:PF03467 EMBL:AB027925 PIR:S67432
RefSeq:NP_593705.1 ProteinModelPortal:Q10267
EnsemblFungi:SPAC13G7.03.1 GeneID:2542908 KEGG:spo:SPAC13G7.03
OrthoDB:EOG480N5F NextBio:20803947 Uniprot:Q10267
Length = 278
Score = 176 (67.0 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 47/163 (28%), Positives = 82/163 (50%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSY--KHQRYSRAYVELKKPAGV 66
KV++ +LPP+L + L F W F GK++ + + S AY++ + V
Sbjct: 13 KVLVFNLPPTLPEQVFLQSINS-FLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 71
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
EF + GH F+++K ++AIV AP Q++P + DS EG++ +DP + EF KV
Sbjct: 72 QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF-KVQR 130
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
+ S + +E+ + TPL++Y+ +K+ A
Sbjct: 131 ESYSQTASNDDVIEKLQTS-----------TPLLQYLAEKKNA 162
Score = 53 (23.7 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 33/136 (24%), Positives = 55/136 (40%)
Query: 326 ETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTS-SPNGHVTNNDSPIFSFDGNTKRSSDD 384
E QT S +Q + +N E GK P S + + P + K S +
Sbjct: 144 EKLQT-STPLLQYLAEKKNAVVEKGKSKPSKKSVKAKKKLRLAEKPASNNSKAGKSSQES 202
Query: 385 RFARKVLHGSGAVSEKQEK---RTRNKDRPDRVVWTP-RRSDVSQANGERLSSSQPTQLL 440
+ + K S A K++K R ++K +P + TP S SQA+ E S + +
Sbjct: 203 KKSSKAPAESAAAVIKEDKVSDRKKSKKKPKK---TPVSNSTASQAS-ENASDKKTKEKK 258
Query: 441 SDSVEVTRGEMKDDMS 456
S + + KD ++
Sbjct: 259 SSGKQKIASKKKDQLT 274
>ASPGD|ASPL0000056196 [details] [associations]
symbol:AN0505 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACD01000007 eggNOG:NOG251520 KO:K14328
InterPro:IPR005120 Pfam:PF03467 OrthoDB:EOG480N5F
RefSeq:XP_658109.1 ProteinModelPortal:Q5BG25
EnsemblFungi:CADANIAT00002182 GeneID:2876277 KEGG:ani:AN0505.2
HOGENOM:HOG000216582 OMA:SRPSRAY Uniprot:Q5BG25
Length = 590
Score = 161 (61.7 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 44/158 (27%), Positives = 81/158 (51%)
Query: 35 RYNWFCFRPGKSSYKH--------QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86
R +W ++PGK S H R SRAY+ + + ++ + F++ +
Sbjct: 68 RVSWAQYKPGKVSKDHGNHSPAKPSRPSRAYLYVVSSEHIAPLSDKVRSTSFLDARNTAN 127
Query: 87 KAIV------EYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLE 140
++ E+AP ++P RKD+R GTI +DP++++FL+ + +P AE E
Sbjct: 128 DPVLLGPPNLEFAPYAKIPGSRVRKDARLGTIDQDPEFIQFLESLTQPITKPTLAETSAE 187
Query: 141 RKEAELSGAPKETLVVTPLMEYVRQKRA--AESGAQES 176
++ KET+ TPL++Y+++K+A A+ A +S
Sbjct: 188 GEDK------KETVTTTPLVQYIKEKKANKAKEAASKS 219
Score = 47 (21.6 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 292 ESSPVKNSA--SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQEN 349
E+ P +SA S T K+I R G + +++T+++ + QP + Q+ +
Sbjct: 339 ENEPKTDSAAASETSKKEISTRSPKGSPAQDT--SSKTKRSNTP---QPSETPQSQRSDT 393
Query: 350 GKPLPGPTSSPNG 362
P TS+P G
Sbjct: 394 STPAQA-TSTPRG 405
Score = 41 (19.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 ARRKDKSTFTVVAKREDQPASSSGKETSAS 246
++R D ST P S GK++SA+
Sbjct: 388 SQRSDTSTPAQATSTPRGPRSGRGKQSSAA 417
Score = 39 (18.8 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 290 QRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQEN 349
Q +P + + P Q G R R + T T + T Q K N +Q
Sbjct: 381 QPSETPQSQRSDTSTPAQATSTPRGPRSGRGKQSSAATPTTPTSTATQAFLKHANPSQGV 440
Query: 350 GKPLPGPTSSPNGHV 364
+PL P G V
Sbjct: 441 TEPLLEAAFLPFGKV 455
>WB|WBGene00004882 [details] [associations]
symbol:smg-4 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IGI] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0030539 "male genitalia
development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] InterPro:IPR012677 GO:GO:0005634
GO:GO:0048471 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030539 GO:GO:0040035 GeneTree:ENSGT00390000017146 KO:K14328
InterPro:IPR005120 Pfam:PF03467 EMBL:Z70780 GeneID:179371
KEGG:cel:CELE_F46B6.3 CTD:179371 HOGENOM:HOG000021649
NextBio:905120 RefSeq:NP_741600.1 ProteinModelPortal:Q8WQF3
SMR:Q8WQF3 STRING:Q8WQF3 PRIDE:Q8WQF3 EnsemblMetazoa:F46B6.3b
WormBase:F46B6.3b InParanoid:Q8WQF3 OMA:FCKKLEE ArrayExpress:Q8WQF3
Uniprot:Q8WQF3
Length = 368
Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 41/167 (24%), Positives = 77/167 (46%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA-GVF 67
KVV+R LP ++++++L + + F P S+ Y+ V + +
Sbjct: 10 KVVLRRLPKYMTEHEVLEQISPLPEEVIGTY-FHPANFSFDRCAYATLTVNFSEYCDSMM 68
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPK---PFSRKDSREGTIFKDPDYLEFLKV 124
EF +G++FV+ +G A+VE A +Q K ++D+R G I D YL+F K
Sbjct: 69 EFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYYLDFCKK 128
Query: 125 IAKP-AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 170
+ + A + + E Q+ + + + TPL++Y +K +
Sbjct: 129 LEEERAIPILTLEQQIRKLNQPDDARTQIDKMETPLVKYFFEKETGK 175
>CGD|CAL0003622 [details] [associations]
symbol:orf19.5277 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR012677 CGD:CAL0003622
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000070
EMBL:AACQ01000071 KO:K14328 InterPro:IPR005120 Pfam:PF03467
RefSeq:XP_716346.1 RefSeq:XP_716408.1 ProteinModelPortal:Q5A3J3
GeneID:3641971 GeneID:3642005 KEGG:cal:CaO19.12742
KEGG:cal:CaO19.5277 eggNOG:NOG147498 Uniprot:Q5A3J3
Length = 407
Score = 105 (42.0 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 46/181 (25%), Positives = 80/181 (44%)
Query: 9 KVVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELKK 62
K VIR LPPSL++++ L A + + + F + G K++++ YSRAYV
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKICQFYYIQGHYPKTNFEVPIYSRAYVNFSN 109
Query: 63 PAGVFEFAELLNGHVFVNE--------KGAQFKAIVEYAP--SQRVPKPFSRKDSREGTI 112
EF L F NE + A F +V+ + SQ+ K S+K+ + +
Sbjct: 110 QHDSLEFLNFLKEKPFENEFDSIIPVIEKALFHKMVDTSANTSQKTLKE-SKKNLKRDDL 168
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 172
+ Y +FL I + +I K+ E S A T + + ++ K++++
Sbjct: 169 VNNEIYKKFLMFINNEIDQFDLIKINKSTKKKESSKAVSSTSKSSKERKKLKAKKSSKEK 228
Query: 173 A 173
A
Sbjct: 229 A 229
Score = 54 (24.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 34/160 (21%), Positives = 66/160 (41%)
Query: 289 KQRESSPVKNSASPTVP--KQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLN 346
K++ESS +S S + K+++ +++ + + +S + + K +
Sbjct: 198 KKKESSKAVSSTSKSSKERKKLKAKKSSKEKATTVSREKSKEKDKSKEKTKDKGKEKPEK 257
Query: 347 QENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDD--RFARKVLHGSGA---VSEKQ 401
+NG+ + S N + S N +S+D+ + +K S SEK
Sbjct: 258 SKNGEDV-SKDKSVNKDTKGQEDVKLSKKSNGSKSTDEGTKEIKKRPRRSKKPKDTSEKT 316
Query: 402 EKRTRNK-----DRPDRVVWTPRRSDVSQANGERLSSSQP 436
+K+T +K D V P ++ S+AN SS+P
Sbjct: 317 KKQTESKSGTTSDEKTEVA-KPSKATKSKANKPTSKSSKP 355
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 523 468 0.00098 118 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 611 (65 KB)
Total size of DFA: 253 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.72u 0.08s 46.80t Elapsed: 00:00:02
Total cpu time: 46.73u 0.08s 46.81t Elapsed: 00:00:02
Start: Sat May 11 09:10:50 2013 End: Sat May 11 09:10:52 2013