BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009860
(523 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449447609|ref|XP_004141560.1| PREDICTED: uncharacterized protein LOC101208317 [Cucumis sativus]
gi|449517953|ref|XP_004166008.1| PREDICTED: uncharacterized LOC101208317 [Cucumis sativus]
Length = 506
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 306/532 (57%), Positives = 375/532 (70%), Gaps = 37/532 (6%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+PL+RTKVVIRHLPPSLS +DL D F R+NW +RPGK+S K QRY+RAY++
Sbjct: 1 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
+P VFEFAE +GHVFVNEKGAQ+KA+VEYAPSQRVP+ ++KD REGTI+KDPDYLE
Sbjct: 61 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FLK+IAKPAE+LPSAEIQLERKEAE SGA KET +VTPLME+VRQKRA ESG Q S +V
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGS-SVP 179
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPASSSG 240
R +R AAS+ K S + KRG EKKKYILKDS KN R+DKS F +V +REDQ A+SS
Sbjct: 180 RKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSA 239
Query: 241 KETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSA 300
G+ VG T+D GKKKILLLKGKER+I H+ +S+ ++
Sbjct: 240 ---------IGIS-DVG---TADFGKKKILLLKGKERDISHL---------QSATSSGNS 277
Query: 301 SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSP 360
+ K RREAGG +IR ILLNNE R QS + Q QK+Q LN +NGK P PT++
Sbjct: 278 PASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNAR 337
Query: 361 NG--HVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP 418
+G +++N+ +G+ KR+SD++F++K LHG G+ SEKQEKR RNKDRPDR VW P
Sbjct: 338 SGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAP 397
Query: 419 R-RSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG------- 470
R RSD S + E S Q + LLSDSVE RGEMK+D+ +GS+T D+ SG
Sbjct: 398 RSRSDASVSQLEESSVPQSSHLLSDSVEAFRGEMKEDI-HGSRTGDVTTIVSGRNSSVEN 456
Query: 471 GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
GS RH GRR A ++ KDDG +N EGK SK RG A GG+EKQVW+QKSSSG
Sbjct: 457 GSVRHVGRRGAGHVMKDDGSLNPNEGKPSK-RGVA--GGHEKQVWVQKSSSG 505
>gi|356507710|ref|XP_003522607.1| PREDICTED: uncharacterized protein LOC100801152 [Glycine max]
Length = 535
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 301/537 (56%), Positives = 376/537 (70%), Gaps = 30/537 (5%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
++TKVVIRHLPPSL+Q+DL HF RYNWF FRPG +S+K QR+SRAY++ K P
Sbjct: 8 EKTKVVIRHLPPSLTQSDLFQHIDSHFASRYNWFSFRPGNNSHKRQRHSRAYIDFKCPDD 67
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI 125
VFEFAE +GHVFVNE+GAQ K IVEYAPSQRVPKP ++KD REGTIFKDPDYLEFLK+I
Sbjct: 68 VFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIFKDPDYLEFLKLI 127
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGRR 185
AKP E+LPSAEIQLERKE+E GA KET +VTPLMEY+RQKRA +SG Q S AV +V RR
Sbjct: 128 AKPQEHLPSAEIQLERKESEQVGASKETPIVTPLMEYIRQKRAVDSGMQASSAVAKVCRR 187
Query: 186 SRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDK---STFTVVAKREDQPASSSGKE 242
SRAA K S KRGSEKKKY+ KD+AK+A RK+ S F VV +R+DQ A SS K
Sbjct: 188 SRAALPGKPGSGNIKRGSEKKKYVQKDNAKSATRKESKNMSAFIVVPRRDDQFAESSIKG 247
Query: 243 TSASETICGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSAS 301
S +T+ GVEGS+ GIPLTS++GKKK LLLKGK+++IP +A + +Q S NS
Sbjct: 248 ISDIKTLHGVEGSISGIPLTSESGKKKFLLLKGKQQDIPSATEATVKQQNVQS--GNSPI 305
Query: 302 PTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP---GPTS 358
T KQ QRREA GRLIR ILLNNE RQ+QS TG Q K+Q L+ ENG+ G S
Sbjct: 306 STPAKQNQRREASGRLIRSILLNNEARQSQSTTGT--QHKIQILSSENGQRPSRRFGSRS 363
Query: 359 SPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP 418
N V+N+D+ + +G+++R+ D++F ++ LHG G+ S K EKRTRNKDRPDR VWTP
Sbjct: 364 GLNNQVSNHDAAQINSEGDSRRALDEKFIKRDLHGLGS-SAKTEKRTRNKDRPDRGVWTP 422
Query: 419 -RRSDVSQANGERLSSS--QPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG----- 470
RRSDVS A + SSS QPTQ +S E GE+K+++ G++ + +A G
Sbjct: 423 LRRSDVSHAGNDYSSSSLAQPTQSNPESAE---GEVKENVPSGNRGGEFSASAGGHGGNP 479
Query: 471 ----GSHRHNGRRAATNITKDDGCINMI-EGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
GS R+ A+ + KDDG ++ I +GK SK+ + G +EKQVW+ KSSSG
Sbjct: 480 SIENGSQRNFIHHGASYVVKDDGAVSSISKGKPSKK--SVGHSAHEKQVWVHKSSSG 534
>gi|356517820|ref|XP_003527584.1| PREDICTED: uncharacterized protein LOC100795376 [Glycine max]
Length = 529
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 300/535 (56%), Positives = 369/535 (68%), Gaps = 38/535 (7%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
++TKVVIRHLPPSLSQ+DL HF RYNWF FRPG +S+ QR+SRAY++ K P
Sbjct: 14 EKTKVVIRHLPPSLSQSDLSQHIDSHFASRYNWFSFRPGNNSHTRQRHSRAYIDFKCPDD 73
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI 125
VFEFAE +GHVFVNE+GAQ K IVEYAPSQRVPKP ++KD REGTI+KDPDYLEFLK+I
Sbjct: 74 VFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIYKDPDYLEFLKLI 133
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGRR 185
AKP E+LPSAE+QLERKEAE +GA KET +VTPLME+VRQ+RA +SG Q S AV +V RR
Sbjct: 134 AKPQEHLPSAEVQLERKEAEQAGANKETRIVTPLMEFVRQRRAVDSGMQASSAVAKVSRR 193
Query: 186 SRAASASKTSSTTTKRGSEKKKYILKDSAKNARR---KDKSTFTVVAKREDQPASSSGKE 242
SRAA K S TKRGSEKKKY+ KD+AK R KDKS F VV +R++Q A
Sbjct: 194 SRAALPGKPGSGNTKRGSEKKKYVQKDNAKGVARKESKDKSAFVVVPRRDNQSA------ 247
Query: 243 TSASETICGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSAS 301
E++ G+EG GI LTSD+GKKKILLLKGK+REIP + + +Q S NS
Sbjct: 248 ----ESMHGIEGPFSGISLTSDSGKKKILLLKGKQREIPSAIEGTVKQQNIQS--GNSPI 301
Query: 302 PTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP---GPTS 358
KQ QRREA GRLIR ILLNNE+RQ+ S TG Q K+Q L+ ENGK P G S
Sbjct: 302 SAPAKQNQRREASGRLIRSILLNNESRQSLSTTGA--QHKIQILSSENGKRPPRTFGSRS 359
Query: 359 SPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP 418
N V+NND+ + +G++K + D +F ++ LHG G+ EK EKRTRNKDRPDR VWTP
Sbjct: 360 GLNDQVSNNDAAQVNSEGDSKMALDKKFVKRDLHGLGS-GEKTEKRTRNKDRPDRGVWTP 418
Query: 419 -RRSDVSQANGERLSSS--QPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG----- 470
RRSDVS A + SSS QPTQ +S E GE+K+++ G++ + +A G
Sbjct: 419 LRRSDVSNAGNDHSSSSLAQPTQSNPESAE---GEVKENVPSGNRGGEFSASAGGRGNPS 475
Query: 471 ---GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
S R+ RR A+ I KDDG +++ EGK SK+ + G +EKQVW+QKSSSG
Sbjct: 476 IENDSQRNFTRRGASYIVKDDGAVSISEGKPSKK--SVGHSAHEKQVWVQKSSSG 528
>gi|357455505|ref|XP_003598033.1| B3 domain-containing protein [Medicago truncatula]
gi|355487081|gb|AES68284.1| B3 domain-containing protein [Medicago truncatula]
Length = 1203
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 283/533 (53%), Positives = 359/533 (67%), Gaps = 33/533 (6%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
RTKVVIRHLPPSL+++DL+ + F+ RY+WF FR G +SY++Q+Y+RAY++ P V
Sbjct: 9 RTKVVIRHLPPSLTESDLIQHIDNRFSSRYHWFVFRSGNTSYRNQKYARAYLDFNSPDDV 68
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
FEFAE NGHVFVNEKG Q KA+VEYAPSQRVPK ++KD REGTI+KDPDYLEFLK+I+
Sbjct: 69 FEFAEFFNGHVFVNEKGVQHKAVVEYAPSQRVPKLSTKKDGREGTIYKDPDYLEFLKLIS 128
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGRRS 186
KP E+LPSAEIQLERKEAE +GA KE +VTPLM Y+RQKRA +SG S A RVGRR+
Sbjct: 129 KPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMAYIRQKRAVDSGPLVSSAATRVGRRA 188
Query: 187 RAASASKTSSTTTKRGSEKKKYILKDSAKNARR---KDKSTFTVVAKREDQPASSSGK-- 241
RA K + T+RGSEKKKY+ KD+ KNA R KDKS FTVV +RED + SS K
Sbjct: 189 RAMQG-KPGPSNTRRGSEKKKYVQKDNVKNANRKDSKDKSAFTVVPRREDHSSESSIKGV 247
Query: 242 -ETSASETI-----CGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 294
E +S I G+EGS+ GIPLTSD+GKKKILLLKGK+REIP + ++ +Q S
Sbjct: 248 YEIDSSHVIDEFAVHGIEGSISGIPLTSDSGKKKILLLKGKQREIPKATEGMVKQQNAQS 307
Query: 295 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP 354
N PT KQ QRREAGGRLIR ILLNNE+RQ+QS + Q K+Q L ENG+ P
Sbjct: 308 --ANLPIPTTAKQNQRREAGGRLIRSILLNNESRQSQSTSTA--QHKIQILTSENGRRPP 363
Query: 355 GPTSSPNG---HVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRP 411
P S +G V+++D+ + +G +KR D++F R+ HGSG + +K E+RTRNKDRP
Sbjct: 364 RPFGSRSGLSDQVSSHDAGHVNSEGESKRDLDEKFVRRDFHGSG-IGDKTERRTRNKDRP 422
Query: 412 DRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG 470
DR VW P RRSD S ++ E SSS S+ E GE+K++ G+++ + +A G
Sbjct: 423 DRGVWAPLRRSDSSHSSNELSSSSLAQSAPSNP-ESVEGEVKENAYSGNRSGEFSASAGG 481
Query: 471 --------GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVW 515
GS R RR A I KDDG ++ EGK SK+ G+ +E W
Sbjct: 482 RSSPSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKK--GVGNSTHEFAYW 532
>gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsis thaliana]
gi|10092444|gb|AAG12847.1|AC079286_4 unknown protein; 6107-8789 [Arabidopsis thaliana]
gi|22136008|gb|AAM91586.1| unknown protein [Arabidopsis thaliana]
gi|23197808|gb|AAN15431.1| unknown protein [Arabidopsis thaliana]
gi|332193532|gb|AEE31653.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 482
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/529 (50%), Positives = 336/529 (63%), Gaps = 55/529 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKSSYK+Q+YSRAYV
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDPDYLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q +
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QPASSS 239
R GRR+R SA+K S +KR SEKKKY+ K+S+KN R K+T V + + D + ++SS
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPR--KTTADVSSSKPDYRQSNSS 238
Query: 240 GKETSASETICGVEGS-VGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKN 298
GKE +ET ++ S GI LT D+GKKKILLL+ K+R+ P P ++ +++ +N
Sbjct: 239 GKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRN 298
Query: 299 SASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTS 358
S T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K P
Sbjct: 299 S---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRP-- 353
Query: 359 SPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP 418
NT+ A K H SG +SEKQE+RTRNKDRPDRV+W P
Sbjct: 354 -----------------ANTR-------AGKDYHTSGTISEKQERRTRNKDRPDRVMWAP 389
Query: 419 RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG-----GSH 473
RR S QP ++ GE+KD M + ++ ++ + G GS
Sbjct: 390 RRDG---------SEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLENGSA 434
Query: 474 RHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
RH+ RR K++ I EGK+S+R G +EKQ+WIQK SSG
Sbjct: 435 RHSSRRVGGRNRKEEVVIG--EGKTSRRGSGGGPSSHEKQMWIQKPSSG 481
>gi|297739512|emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 273/538 (50%), Positives = 350/538 (65%), Gaps = 36/538 (6%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK PL RTKVV+RHLPP++S+ L F RY FRPGK+S K Q YSRAY++
Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KD REGTIFKDP+Y+E
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYME 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
F++++AKP ENLPSAEIQLER+EAE +GA K+T +VTPLM++VRQKRAA+ ++ SL+ G
Sbjct: 121 FVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRRSLSNG 180
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
++ RR+ +S+ S ++KRGSEK++ Y+L+D+AK+ KDKSTF +V KR+DQ
Sbjct: 181 KLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKSTSAKDKSTFILVPKRDDQL 240
Query: 236 ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSP 295
S +A +E G+ D GKKK+LLLKGKEREI H L +Q +SP
Sbjct: 241 LSDKSVNLAAGGGAEALEEESGVSGAVDAGKKKVLLLKGKEREISH----HLLQQNVTSP 296
Query: 296 VKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPG 355
VKN PKQ QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K P
Sbjct: 297 VKNILGANAPKQNQRREGSGRIIRSILLNKDARQSQS-SMFQTEQQSQASNLEKEKRPPR 355
Query: 356 PTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVV 415
P P+ + + + T + DD+ +H VSEKQ+KRTRNKDRPDR V
Sbjct: 356 P---PHIQLASKE---------TNGAQDDKVVGNDVH--SFVSEKQDKRTRNKDRPDRGV 401
Query: 416 WTP-RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---- 470
WTP RRSD S A+ E LSSS SD E + GEM+ DMS +++ ++ A SG
Sbjct: 402 WTPLRRSDGSHASDESLSSSASQPTSSDFPEGSHGEMRSDMS-NARSGEVKALGSGRGGH 460
Query: 471 -----GSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
GSH+H+GRR T+ KD DG + EGK SKR A G G +EKQVW+QKSSSG
Sbjct: 461 SALDNGSHKHSGRRGPTHSVKDADGSSIVSEGKHSKRGSAPGYGSHEKQVWVQKSSSG 518
>gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]
gi|297336911|gb|EFH67328.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 268/529 (50%), Positives = 337/529 (63%), Gaps = 51/529 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKSSYK+Q+YSRAYV
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V+EFA NGHVFVNEKGAQFKA+VEYAPSQRVPKP +KD REG+I KDPDYLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAVVEYAPSQRVPKPCDKKDPREGSISKDPDYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G+Q V
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGSQGLSDVR 180
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QPASSS 239
R GRR+R SA+K SS +KR SEKKKY+ KDS+KN R K+T V + + D + ++SS
Sbjct: 181 RGGRRARVVSANKPSSRPSKRNSEKKKYVEKDSSKNVPR--KTTADVSSSKPDYRQSNSS 238
Query: 240 GKETSASETICGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKN 298
G ET T ++ S+ GI LT D+GKKKILLLK K+R+ P ++ E+ N
Sbjct: 239 GNETGNKSTAPVIDSSLPGIALTMDSGKKKILLLKSKDRDNSDNPPPQPEQHIETILSGN 298
Query: 299 SASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTS 358
S T +Q Q+ + GGRLI+ IL+ +++R +QS T VQP+Q+++ EN K P P
Sbjct: 299 S---TASRQNQKSDVGGRLIKGILMKSDSRPSQSSTFVQPEQRVEPSEAENYKRPPRP-- 353
Query: 359 SPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP 418
NT+ A K H SG +SEKQE+RTRNKDRPDRVVW P
Sbjct: 354 -----------------ANTR-------AGKDYHASGTISEKQERRTRNKDRPDRVVWAP 389
Query: 419 RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG-----GSH 473
R D G +S QP ++ GE+KD M + ++ ++ + G GS
Sbjct: 390 LRRD-----GSNISEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLENGSA 438
Query: 474 RHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
RH+ RR K++ + EGK+S+R G G EKQ+WIQK S G
Sbjct: 439 RHSSRRVGGRNRKEE--LMTGEGKTSRRGGGGGPNSQEKQMWIQKPSLG 485
>gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
gi|332193533|gb|AEE31654.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 484
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 264/531 (49%), Positives = 335/531 (63%), Gaps = 57/531 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKS--SYKHQRYSRAYV 58
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKS YK+Q+YSRAYV
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDY 118
K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDPDY
Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120
Query: 119 LEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLA 178
LEFLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180
Query: 179 VGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QPAS 237
+ R GRR+R SA+K S +KR SEKKKY+ K+S+KN R K+T V + + D + ++
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPR--KTTADVSSSKPDYRQSN 238
Query: 238 SSGKETSASETICGVEGS-VGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPV 296
SSGKE +ET ++ S GI LT D+GKKKILLL+ K+R+ P P ++ +++
Sbjct: 239 SSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLS 298
Query: 297 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 356
+NS T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K P
Sbjct: 299 RNS---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRP 355
Query: 357 TSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVW 416
NT+ A K H SG +SEKQE+RTRNKDRPDRV+W
Sbjct: 356 -------------------ANTR-------AGKDYHTSGTISEKQERRTRNKDRPDRVMW 389
Query: 417 TPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG-----G 471
PRR S QP ++ GE+KD M + ++ ++ + G G
Sbjct: 390 APRRDG---------SEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLENG 434
Query: 472 SHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
S RH+ RR K++ I EGK+S+R G +EKQ+WIQK SSG
Sbjct: 435 SARHSSRRVGGRNRKEEVVIG--EGKTSRRGSGGGPSSHEKQMWIQKPSSG 483
>gi|224146308|ref|XP_002325958.1| predicted protein [Populus trichocarpa]
gi|222862833|gb|EEF00340.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 265/536 (49%), Positives = 328/536 (61%), Gaps = 31/536 (5%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELK 61
KEPL RTKVVIRHLPPSLSQ++L + F F RYNWF FRPG SS+K QRYSRAY++ K
Sbjct: 5 KEPLGRTKVVIRHLPPSLSQSNLFSQFDHLFCHRYNWFRFRPGNSSHKSQRYSRAYIDFK 64
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
P V EFA +GHVFVNEKG+QFKAIVEYAP Q VPK KDSREGTI+ DPDYLEF
Sbjct: 65 NPEDVLEFAGFFHGHVFVNEKGSQFKAIVEYAPCQHVPKSCPHKDSREGTIYTDPDYLEF 124
Query: 122 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGR 181
LK+IAKPA N PSAEI+LERKEAE S A K + TPLME+VR+KR A+ G Q S AV +
Sbjct: 125 LKLIAKPARNPPSAEIKLERKEAEESEAVKGAPISTPLMEFVRKKR-ADKGVQGS-AVVK 182
Query: 182 VGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPASSSGK 241
+R+ +AS + + S+ K+GS KK+YILKDS KN+ K KS + K+E P +S K
Sbjct: 183 NRKRAGSASLTNSGSSNAKQGSGKKRYILKDSTKNSNWKGKSIIIMARKQEGLPTTSGRK 242
Query: 242 ETSASETICGVEGSVG-IPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSA 300
E S E+I GVEGS I L +++G+K LLL GK+REI + L + +S +S
Sbjct: 243 EISEVESISGVEGSASKISLDAESGRKINLLLDGKKREISLESEGPLHQLGLTSNFGSSV 302
Query: 301 SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSP 360
S T KQ QR EA RLI+ IL + ++K QNL EN K P ++
Sbjct: 303 S-TAAKQYQRHEASERLIKSILPSK---------AASAKKKFQNLEVENDKQPIQPKTTQ 352
Query: 361 ---NGHVTNNDSPIFSF-DGNTKRSSDDRFARKVLHGSGAVSEKQEKR---TRNKDRPDR 413
+GHV + P+ S D + K SS D+ +K H G+ EKQ+KR TRNKDRP R
Sbjct: 353 VGLSGHVPYKE-PLASMSDNDVKSSSYDKLVKKDQHDPGSHFEKQQKREKHTRNKDRPCR 411
Query: 414 VVWTPRRSDVS-QANGERLSSS-QPTQLLSDSVEVTRGEMKDDMSY-----GSKTVDIAA 466
VWTP R+ S AN E L+SS +++ SDSV T GE+KD Y GS +
Sbjct: 412 GVWTPVRNCPSKHANAEHLTSSILQSEVHSDSVRETHGEVKDGTQYRDHNQGSAGSPSGS 471
Query: 467 PTSGG---SHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKS 519
S S R GRR + D + GK SK+ G AG EKQVW+QKS
Sbjct: 472 NNSSAENVSRRDFGRRVTAHNIMLDSSPSATGGKFSKKGGHAGYTAQEKQVWVQKS 527
>gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidopsis thaliana]
Length = 525
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/500 (49%), Positives = 316/500 (63%), Gaps = 55/500 (11%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKSSYK+Q+YSRAYV
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDPDYLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES--LA 178
FLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q+
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQQQGLSD 180
Query: 179 VGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QPAS 237
+ R GRR+R SA+K S +KR SEKKKY+ K+S+KN R K+T V + + D + ++
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPR--KTTADVSSSKPDYRQSN 238
Query: 238 SSGKETSASETICGVEGS-VGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPV 296
SSGKE +ET ++ S GI LT D+GKKKILLL+ K+R+ P P ++ +++
Sbjct: 239 SSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLS 298
Query: 297 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 356
+NS T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K P
Sbjct: 299 RNS---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRP 355
Query: 357 TSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVW 416
NT+ D H SG +SEKQE+RTRNKDRPDRV+W
Sbjct: 356 -------------------ANTRAGKD-------YHTSGTISEKQERRTRNKDRPDRVMW 389
Query: 417 TPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG-----G 471
PRR S QP ++ GE+KD M + ++ ++ + G G
Sbjct: 390 APRRDG---------SEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLENG 434
Query: 472 SHRHNGRRAATNITKDDGCI 491
S RH+ RR K++ I
Sbjct: 435 SARHSSRRVGGRNRKEEVVI 454
>gi|224129726|ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|222839085|gb|EEE77436.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/538 (48%), Positives = 344/538 (63%), Gaps = 45/538 (8%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
+TKVV+RHLPP +SQ + F+ RYNW +RPG +S KHQ YSRAY++ K+P V
Sbjct: 9 KTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKRPEDV 68
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
+FAE NGH+FVNEKG QFKAIVEY+PSQRVPK +S+KD REGTI KDP+YLEFL++IA
Sbjct: 69 IDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEYLEFLELIA 128
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGRRS 186
KP ENLPSAEIQLER+EAE +GA K+ +VTPLM++VRQKR A++G + L+ G++ R
Sbjct: 129 KPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRILSNGKLSR-- 186
Query: 187 RAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQPASSSGK 241
RA + SS++ KRGSEKK+ Y+L+D+AK+ KDKST+ V KR+DQ S++
Sbjct: 187 RAGGSGSPSSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQLSNAVT 246
Query: 242 ETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSAS 301
S S T + SV + +D+GKKKILLLKGKE+EI V + +Q SS +N S
Sbjct: 247 LGSGSGTAVLEDESV-VSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDRNIIS 305
Query: 302 PTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPN 361
T K QRRE GR+IR ILLN ++R +S +GV + +MQ N E K P P +
Sbjct: 306 STALKS-QRRETSGRMIRSILLNKDSRHIRS-SGVHSEPQMQTSNLEKEKRPPRPPHAQL 363
Query: 362 GHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP-RR 420
G N +P DD+ LH G +EKQEKRTRNKDRPDR VWTP RR
Sbjct: 364 GLKDANGTP------------DDKVVGNDLH--GFPNEKQEKRTRNKDRPDRGVWTPLRR 409
Query: 421 SDVSQANGERL--SSSQPTQLLSDSVEVTRGEMK-DDMSYGSKTVDIAAPTSG------- 470
SD S A+ E L S+SQ TQ + DS + G++K D ++ S V + G
Sbjct: 410 SDGSYASDESLLSSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSGRGNHSSLDN 469
Query: 471 GSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNE-------KQVWIQKSS 520
GSH+H GRR ++I +D DG +E K+ KR G++G G +E KQVW+QKS+
Sbjct: 470 GSHKHFGRRGPSHIVRDADGS--TVEAKTPKRGGSSGYGSHEVCSLDSQKQVWVQKST 525
>gi|255570968|ref|XP_002526435.1| conserved hypothetical protein [Ricinus communis]
gi|223534215|gb|EEF35930.1| conserved hypothetical protein [Ricinus communis]
Length = 472
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 317/544 (58%), Gaps = 106/544 (19%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
++TKVV+RHLPP++SQ L F+ RYNW FRPGKSS KHQ YSRAY++ K+P
Sbjct: 7 EKTKVVVRHLPPTISQGSFLEQIDVVFSGRYNWVSFRPGKSSQKHQSYSRAYIDFKRPED 66
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI 125
V EFAE NGH+FVNEKG QF+AIVEYAPSQ VPK +S+KD REGTI KDP YLEFL++I
Sbjct: 67 VIEFAEFFNGHLFVNEKGTQFRAIVEYAPSQHVPKQWSKKDGREGTIVKDPAYLEFLELI 126
Query: 126 AKPAENLPSAEIQL-ERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGR 184
+KPAENLPSAEIQL R+ + A K+ +VTPLM++VRQKRAA++G+
Sbjct: 127 SKPAENLPSAEIQLERREAERAASAAKDAPIVTPLMDFVRQKRAAKTGS----------- 175
Query: 185 RSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQP--------A 236
+Y+L+DSAK+ KDKST+ +V KR+DQ A
Sbjct: 176 ----------------------RYVLRDSAKSTSGKDKSTYLLVPKRDDQQFSDKSTPFA 213
Query: 237 SSSGKETSASET----ICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRE 292
S+SG E E+ +C + I+ L G + KQ
Sbjct: 214 SASGTEVLEDESELYHLCLL----------------IVQLSGG-----------MSKQNA 246
Query: 293 SSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKP 352
+S KN S + KQ QRRE+ GR+IR ILLN ++RQ QS +G Q +Q++Q+ N E K
Sbjct: 247 ASFDKNVTSSAI-KQSQRRESSGRIIRSILLNKDSRQNQS-SGFQSEQQIQSSNLEKEKR 304
Query: 353 LPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPD 412
LP P HV + D N SSDD+F LHG EKQEKRTRNKDRPD
Sbjct: 305 LPRPA-----HVQ-----LVLKDVNG--SSDDKFVGNDLHGFSG--EKQEKRTRNKDRPD 350
Query: 413 RVVWTP-RRSDVSQA--NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTS 469
RVVWTP RRSD S A S+SQ T DS + G++K D S S++ D+ S
Sbjct: 351 RVVWTPLRRSDGSYASDESLSSSASQSTHTGQDSSQGNLGDIKVDSS-NSRSGDVKTLGS 409
Query: 470 G---------GSHRHNGRRAATNITKD-DGCINMIEGKSSKR-RGAAGSGGNEKQVWIQK 518
G GSH+H GRR ++ +D DG +EGK SKR GA+G G +EKQVW+QK
Sbjct: 410 GRSSHSSLDNGSHKHFGRRGPSHTVRDADGS--SLEGKPSKRGGGASGYGSHEKQVWVQK 467
Query: 519 SSSG 522
SSSG
Sbjct: 468 SSSG 471
>gi|356543385|ref|XP_003540141.1| PREDICTED: uncharacterized protein LOC100798866 [Glycine max]
Length = 510
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 244/549 (44%), Positives = 322/549 (58%), Gaps = 67/549 (12%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK L RTKVV+RHLPPS+S+ LL+ F RYNW FRPGK S KH +SRAY++
Sbjct: 1 MKGALDRTKVVLRHLPPSISEAALLSQIDAAFAGRYNWLSFRPGKISQKHMSFSRAYIDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V FAE NGHVFVN KG+QFK IVEYAPSQRVP+ +S+KD R+GTI+KD +YLE
Sbjct: 61 KRPEDVILFAEFFNGHVFVNVKGSQFKVIVEYAPSQRVPRQWSKKDLRDGTIYKDSEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+++AKP ENLPSAEIQLE++EAE S P ++TPLM++VRQKRAA+ G + L+ G
Sbjct: 121 FLELLAKPVENLPSAEIQLEKREAERSDIP----IITPLMDFVRQKRAAK-GPRRPLSNG 175
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
+V RR+ +S SS T++RGS KK+ Y+ +D K++ KDKS++T+V K++DQ
Sbjct: 176 KVSRRAGTSSNGGPSSATSRRGSGKKRVSATMYVARDPGKSSTIKDKSSYTLVPKQDDQH 235
Query: 236 --------ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALL 287
ASS G +T + G D GKKK+LLLKGKEREI V D L
Sbjct: 236 LPNKASNMASSDGNQTLDENGVSG---------NHDAGKKKVLLLKGKEREIITVSD--L 284
Query: 288 DKQRESSPVKNSA----SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQ 343
D + V +SA TV KQ QR E GR+IR IL E Q+QS + +QK+
Sbjct: 285 DSMSQHHNVTSSAKTVVGSTVLKQSQRHEGSGRIIRSILSKKELHQSQSSRALS-EQKIL 343
Query: 344 NLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEK 403
N E K P P +N +P +++ +H S SE+QE+
Sbjct: 344 TSNLEKEKQPPRPLHVQLILKGSNGTP------------ENKIG---VHDSHVSSERQER 388
Query: 404 RTRNKDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDM-------- 455
R+KDRPDR VWT S+ NG +S S P D +E ++ ++K DM
Sbjct: 389 HVRHKDRPDRGVWT------SRFNGADVSFSSPASSQVDPLEGSQADLKHDMPNARSVEV 442
Query: 456 -SYGSKTVDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQ 513
S+GS V + + G ++H GRR + KD DG EGK +R + G NEKQ
Sbjct: 443 KSFGS--VRTSHSSENGFNKHFGRRGPSYGVKDVDGYSVSSEGKHPRRSSTSAYGSNEKQ 500
Query: 514 VWIQKSSSG 522
VW+QK+SSG
Sbjct: 501 VWVQKASSG 509
>gi|116309808|emb|CAH66847.1| H0525C06.10 [Oryza sativa Indica Group]
gi|218194905|gb|EEC77332.1| hypothetical protein OsI_16007 [Oryza sativa Indica Group]
gi|222628924|gb|EEE61056.1| hypothetical protein OsJ_14914 [Oryza sativa Japonica Group]
Length = 507
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 231/537 (43%), Positives = 317/537 (59%), Gaps = 53/537 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
+K+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR Y+
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYSRLYLNF 67
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V EFAE+ NGHVFVNEKGAQFKA+VEYAPSQ+VPK ++KD+R+GTI KDP+YLE
Sbjct: 68 KGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLE 127
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+ I+KPAE+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ S
Sbjct: 128 FLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS-GSS 186
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK------YILKDSAKNARRKDKSTFTVVAKREDQ 234
R+ R + A +S + +KRGSEK++ Y+L+++A K+K T+ +V KR++
Sbjct: 187 RLSR--KVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENA-----KEKPTYILVPKRDEH 239
Query: 235 PASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 294
+ +E A T G+ GS + ++ K+KI+LLKG+ R + D + +Q+ +
Sbjct: 240 ----AQREKDA--TSGGISGSAHV---AENKKEKIVLLKGRARVDSNTSD-VTSQQQSGT 289
Query: 295 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKP-L 353
P+KN+A + +Q R E GR+I+ IL N E R V Q Q+ + E P +
Sbjct: 290 PMKNAAQ-SSSRQDPRLEGSGRIIKTILSNKEGRH---VVTSQHDQEGHIITAEKRPPRI 345
Query: 354 PGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDR 413
P P S V N K DD+ + LHGSG +SEK E+ RN+DRPDR
Sbjct: 346 PNPRSVVKDQVVENAE---------KNHLDDKHSH--LHGSGLISEKTERHARNRDRPDR 394
Query: 414 VVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDI-------AA 466
VW PRR D S + G SSS+ + + S E + +G + +D
Sbjct: 395 GVWAPRRYDKSASGGTHSSSSEFSPMQQHSGE---NFCQQADGHGERKIDPRGHGGIRGG 451
Query: 467 PTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
P G HRH RR K+ + + +GK SK R +A G +E+QVW+QKSSS
Sbjct: 452 PVENG-HRHANRRGPPRGLKEMEISASTSDGKPSK-RASANYGAHERQVWVQKSSSA 506
>gi|356560129|ref|XP_003548348.1| PREDICTED: uncharacterized protein LOC100799816 [Glycine max]
Length = 508
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 243/541 (44%), Positives = 318/541 (58%), Gaps = 53/541 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK L RTKVV+RHLPPS+S+ LLA F RYNW FRPGK S KH YSRAY++
Sbjct: 1 MKGALDRTKVVLRHLPPSISEAALLAQIDAAFAGRYNWLSFRPGKISQKHISYSRAYIDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V FAE NGHVFVNEKG+QFK IVEYAPSQRVP+ +S+KD R+GTI+KD +YLE
Sbjct: 61 KRPEDVILFAEFFNGHVFVNEKGSQFKVIVEYAPSQRVPRQWSKKDGRDGTIYKDSEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+++AKP ENLPSAEIQLE++EAE S P ++TPLM++VRQKRAA+ G + L+ G
Sbjct: 121 FLELLAKPVENLPSAEIQLEKREAERSDIP----IITPLMDFVRQKRAAK-GPRRLLSNG 175
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
+V +R+ +S SS T++RGS KK+ Y+ +D KN+ KDKS T+V K+ DQ
Sbjct: 176 KVSQRAGTSSNGSPSSVTSRRGSGKKRVSATMYVARDPGKNSTIKDKS--TLVPKQGDQH 233
Query: 236 ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSP 295
S ++S+ ++ + G+ D GKKK+LLLKGKEREI V D LD +
Sbjct: 234 LSDKASNMASSDANLTLDEN-GVSGNHDAGKKKVLLLKGKEREIITVSD--LDSMSQHHN 290
Query: 296 VKNSA----SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGK 351
V +SA TV KQ QR E GR+IR IL E RQ+Q + QQ +Q N E K
Sbjct: 291 VTSSAKMIVGSTVLKQSQRHEGSGRIIRSILSKKELRQSQYSRALSEQQ-IQTSNLEKEK 349
Query: 352 PLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRP 411
P P +N +P +++ +H S SE+QE+ R+KDRP
Sbjct: 350 QPPRPLHVQLILKGSNGTP------------ENKIG---VHDSHVSSERQERHVRHKDRP 394
Query: 412 DRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDM---------SYGSKTV 462
DR VWT R +NG S S D +E + ++K D S GS V
Sbjct: 395 DRGVWTSR------SNGADDSFSSSASSQVDPLEGSHADLKHDTPNARSGEVKSLGS--V 446
Query: 463 DIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSS 521
+ + G ++H GRR ++ KD DG EGK +R + G NEKQVW+QK+SS
Sbjct: 447 RTSHSSENGFNKHFGRRGPSHGVKDVDGYSVSSEGKHPRRSSTSAYGSNEKQVWVQKASS 506
Query: 522 G 522
G
Sbjct: 507 G 507
>gi|115458546|ref|NP_001052873.1| Os04g0440100 [Oryza sativa Japonica Group]
gi|113564444|dbj|BAF14787.1| Os04g0440100 [Oryza sativa Japonica Group]
Length = 507
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 230/537 (42%), Positives = 316/537 (58%), Gaps = 53/537 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
+K+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR Y+
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYSRLYLNF 67
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V EFAE+ NGHVFVNEKGAQFKA+VEYAPSQ+V K ++KD+R+GTI KDP+YLE
Sbjct: 68 KGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDPEYLE 127
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+ I+KPAE+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ S
Sbjct: 128 FLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS-GSS 186
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK------YILKDSAKNARRKDKSTFTVVAKREDQ 234
R+ R + A +S + +KRGSEK++ Y+L+++A K+K T+ +V KR++
Sbjct: 187 RLSR--KVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENA-----KEKPTYILVPKRDEH 239
Query: 235 PASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 294
+ +E A T G+ GS + ++ K+KI+LLKG+ R + D + +Q+ +
Sbjct: 240 ----AQREKDA--TSGGISGSAHV---AENKKEKIVLLKGRARVDSNTSD-VTSQQQSGT 289
Query: 295 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKP-L 353
P+KN+A + +Q R E GR+I+ IL N E R V Q Q+ + E P +
Sbjct: 290 PMKNAAQ-SSSRQDPRLEGSGRIIKTILSNKEGRH---VVTSQHDQEGHIITAEKRPPRI 345
Query: 354 PGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDR 413
P P S V N K DD+ + LHGSG +SEK E+ RN+DRPDR
Sbjct: 346 PNPRSVVKDQVVENAE---------KNHLDDKHSH--LHGSGLISEKTERHARNRDRPDR 394
Query: 414 VVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDI-------AA 466
VW PRR D S + G SSS+ + + S E + +G + +D
Sbjct: 395 GVWAPRRYDKSASGGTHSSSSEFSPMQQHSGE---NFCQQADGHGERKIDPRGHGGIRGG 451
Query: 467 PTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
P G HRH RR K+ + + +GK SK R +A G +E+QVW+QKSSS
Sbjct: 452 PVENG-HRHANRRGPPRGLKEMEISASTSDGKPSK-RASANYGAHERQVWVQKSSSA 506
>gi|357163670|ref|XP_003579808.1| PREDICTED: uncharacterized protein LOC100844832 [Brachypodium
distachyon]
Length = 506
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 232/541 (42%), Positives = 309/541 (57%), Gaps = 55/541 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+P RTKVV+R LPP++ Q ++ F RY+W CFRPG +S K+ RYSR Y+ L
Sbjct: 1 MKDPPPRTKVVLRRLPPAIGQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNL 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K V EFAE NGH+FVNEKGAQFKA+VEYAPSQ+VPK +KD+R+GTI KD +YLE
Sbjct: 61 KSSEDVVEFAEFFNGHIFVNEKGAQFKALVEYAPSQQVPKSTIKKDARQGTITKDLEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL++I+KP E+LPSAEIQLERKEAE + A KE VVTPLM Y+RQ+RAA++ AQ S A
Sbjct: 121 FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMAYIRQQRAAKNMAQRS-ANS 179
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
R+GR+ TS+++ KR SE+++ Y+L+D+ K+K T+ +V KRED
Sbjct: 180 RLGRK---VVGVVTSTSSPKRASERRRASTSTYVLRDA------KEKPTYILVPKREDHS 230
Query: 236 ------ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDK 289
A +SG TS+ + GS + D+ K KI+LLKG+ R V D+
Sbjct: 231 QREKIIAGTSGDATSSRPS-----GSAQV----DSKKDKIVLLKGRARTDSTVSDSSTQH 281
Query: 290 QRESSPVKNSAS--PTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQ 347
Q PV +S + P+ +Q QR EA GR+I+ IL N E R Q +Q+ +N
Sbjct: 282 Q----PVASSRNTLPSGSRQDQRLEASGRIIKTILSNKEGRH---AVASQHEQEGHIINA 334
Query: 348 ENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRN 407
E K P PN D + + K DD+ LHGSG +SEK E+ RN
Sbjct: 335 EKDK---RPPRFPNSRSIVKDQTV---ENAEKSHYDDKHNH--LHGSGPISEKIERHARN 386
Query: 408 KDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAP 467
+DRPDR VW PRR D S G +SS L+ + + + D +G + ++ P
Sbjct: 387 RDRPDRGVWAPRRYDKSAPGGGTQASSFDFPLMQSHSGDSFSQPQAD-GHGERKIETRGP 445
Query: 468 TSGGSHRHNGRRAATNITKDDGCINM------IEGKSSKRRGAAGSGGNEKQVWIQKSSS 521
+ NG R A G M +GK SK RG+A G E+QVW+QKSSS
Sbjct: 446 GTRTGPIENGNRHANRRGPPRGSKEMEVSAVTADGKPSK-RGSASYGAQERQVWVQKSSS 504
Query: 522 G 522
G
Sbjct: 505 G 505
>gi|414587118|tpg|DAA37689.1| TPA: hypothetical protein ZEAMMB73_050614 [Zea mays]
Length = 500
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 232/537 (43%), Positives = 306/537 (56%), Gaps = 53/537 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR Y+
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V EFAE+ NGH+FVNEKGAQFKA VEYAPSQ+VPK +KD REGT+ KDP+YLE
Sbjct: 61 KHPEDVVEFAEVFNGHIFVNEKGAQFKAFVEYAPSQQVPKSNVKKDGREGTVTKDPEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+ I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ
Sbjct: 121 FLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQ------ 174
Query: 181 RVGRR-SRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKREDQPA 236
R G R SR + TSS++ KR EK++ Y+++DS K+K T+ +V KRE+
Sbjct: 175 RPGSRLSRKVAGVVTSSSSPKRSFEKRRSSTYVVRDSI-----KEKPTYIMVPKREEH-- 227
Query: 237 SSSGKETSASETICGVEG--SVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 294
T + + G G + G S KI++LKG+ R + PD Q+ S+
Sbjct: 228 ------TQREKIVSGNSGDATSGGASGSGQSSDKIVILKGRGRVDSNTPDGAA--QQSST 279
Query: 295 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP 354
PVKN P+ + +R EA GR+I+ +L N E R S Q +Q+ Q N E K
Sbjct: 280 PVKN-IPPSSSRLDKRSEANGRIIKTVLSNKEVR---SSNPSQHEQEGQMFNTEKDK--- 332
Query: 355 GPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 414
P + N D + N +RS D LH S + EK E+ RN+DRPDR
Sbjct: 333 RPPRALNPRTIVKDQVV----ENAERSHFDE-KNNYLHSSAPIGEKVERHARNRDRPDRS 387
Query: 415 VWTPRRSDVSQANG-ERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDI-------AA 466
VW PRR D S G SS +Q+ S S + ++ D +G + D
Sbjct: 388 VWAPRRYDKSPPGGVSHALSSDFSQMQSHSGDNV-SQLTD--GHGDRKTDTRGHGGSRGV 444
Query: 467 PTSGGSHRHNGRRAATNITKDDGC-INMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
P G HRH RR K+ ++ +GK+SK RG+A G +E+QVW+QKSSSG
Sbjct: 445 PVENG-HRHANRRGTPCDPKETKISASVPDGKNSK-RGSASYGAHERQVWVQKSSSG 499
>gi|242075888|ref|XP_002447880.1| hypothetical protein SORBIDRAFT_06g017380 [Sorghum bicolor]
gi|241939063|gb|EES12208.1| hypothetical protein SORBIDRAFT_06g017380 [Sorghum bicolor]
Length = 504
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 241/542 (44%), Positives = 315/542 (58%), Gaps = 59/542 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR Y+
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE+ NGHVFVNEKGAQFKA VEY+PSQ+VPK +KD REGTI KDP+YLE
Sbjct: 61 KRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYSPSQQVPKSNIKKDGREGTIMKDPEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL++I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ
Sbjct: 121 FLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQ------ 174
Query: 181 RVGRR-SRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKREDQP- 235
R G R SR + TSS++ KR SEK++ Y+++DS K+K T+ +V KRE+
Sbjct: 175 RPGSRLSRKVAGVVTSSSSPKRSSEKRRSSTYVVRDST-----KEKPTYIMVPKREEHTH 229
Query: 236 -----ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQ 290
A +SG TS + G G + + KI++LKG+ R + PD Q
Sbjct: 230 REKAIAGNSGDATSGGTSGSGQAG--------EAKRDKIVILKGRGRVDSNTPDGAT--Q 279
Query: 291 RESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENG 350
+ S+PVK S P + QR EA GR+I+ IL N E R S Q +Q+ N E
Sbjct: 280 QSSTPVK-SVPPATSRLDQRPEASGRIIKTILSNKEIR---SSNPSQHEQEGHVFNTEKD 335
Query: 351 KPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDR 410
K P + N D + N++RS D LHGS + EK E+ RN+DR
Sbjct: 336 K---RPPRAVNPRTIVKDQLV----ENSERSHFDEKTNH-LHGSAPIGEKVERHARNRDR 387
Query: 411 PDRVVWTPRRSDVSQANGERLSSSQP-TQLLSDS------VEVTRGEMKDDM--SYGSKT 461
PDR VW PRR D S + G +SS Q+ S S + G+ K D GS+
Sbjct: 388 PDRGVWAPRRYDKSTSGGGSHASSSDFPQIQSHSGDNVSQIADGHGDRKTDTRGHGGSRG 447
Query: 462 VDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSS 520
V P G HRH RR K+ + ++ +GK+SK RG+A G +E+QVW+QKSS
Sbjct: 448 V----PVENG-HRHANRRGPPRGPKETEISASVPDGKNSK-RGSASYGAHERQVWVQKSS 501
Query: 521 SG 522
SG
Sbjct: 502 SG 503
>gi|326498059|dbj|BAJ94892.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 222/536 (41%), Positives = 309/536 (57%), Gaps = 43/536 (8%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+P RTKVV+R LPP+++Q ++ F RY+W FRPG +S K+ RYSR Y+
Sbjct: 30 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWARFRPGNASQKNHRYSRLYLNF 89
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V EFAE NGHVFVNEKGAQFKA+VEYAPSQ+VPK +KD+R+GTI KDP+YLE
Sbjct: 90 KSPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE 149
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL++I+KP E+LPSAEIQLERKEAE + A KE V+TPLM YVRQ+RAA+S AQ S+
Sbjct: 150 FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVITPLMVYVRQQRAAKSMAQRSVN-- 207
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKK-------KYILKDSAKNARRKDKSTFTVVAKRED 233
R SR + TSS++ + S ++ +Y+++D+A K+K T+ + KR+D
Sbjct: 208 --SRLSRKVAGVVTSSSSPSKRSSERRRASTSTQYVVRDNA-----KEKPTYILAPKRDD 260
Query: 234 QPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRES 293
++ T G GS + D + KI+LLKG+ R ++ D+ +Q S
Sbjct: 261 HTQREKIIAGTSDATSGGPSGSAQV---IDGKRDKIVLLKGRARVDSNISDSSTPQQ--S 315
Query: 294 SPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPL 353
P + P+ +Q QR EA GR+I+ IL N E R Q +Q+ ++ E K
Sbjct: 316 VPPSRNTPPSTSRQDQRNEASGRIIKTILSNKEGRHA---IASQHEQEGHIISAEKDK-- 370
Query: 354 PGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDR 413
P +PN T D + + + N DD+ +HGSG + EK E+ RN+DRPDR
Sbjct: 371 -RPPRAPNSRSTAKDQIVENAEKN---HYDDKHNH--VHGSGPIGEKIERHARNRDRPDR 424
Query: 414 VVWTPRRSDVSQA-NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGG- 471
VW PRR D S + G + SSS+ + S S++ ++ +G + +D P G
Sbjct: 425 GVWAPRRYDKSASGGGAQASSSEFPLMQSHSMDNVSQQVD---GHGERKIDTRGPGGRGG 481
Query: 472 ----SHRHNGRRAATNITKDDGCINMI-EGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
+RH RR K+ + +GK SK RG A +E+QVW+QKSSSG
Sbjct: 482 LVENGNRHPNRRGPPRGPKEVEIPPIASDGKPSK-RGPASYVAHERQVWVQKSSSG 536
>gi|413918386|gb|AFW58318.1| hypothetical protein ZEAMMB73_385077 [Zea mays]
Length = 503
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 232/540 (42%), Positives = 306/540 (56%), Gaps = 56/540 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ R+SR Y+
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDLRFAGRYDWACFRPGNASQKNHRHSRLYLNF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE+ NGHVFVNEKGAQFKA VEYAPSQ+VPK +KD REGTI KDP+YLE
Sbjct: 61 KRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYAPSQQVPKSTIKKDGREGTIMKDPEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+ I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S V
Sbjct: 121 FLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKS------MVH 174
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKREDQP-- 235
R G R AS SS++ KR SEK++ Y+++D+ K+K T+ +V KRE+
Sbjct: 175 RPGSRLSRKLASVVSSSSPKRSSEKRRSSTYVVRDNT-----KEKPTYIMVPKREEHTQR 229
Query: 236 ----ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQR 291
A +SG TS G+ G ++ + KI++LKG+ R + P+ Q
Sbjct: 230 EKDVAGNSGDATSG--------GTSGSGQVAEFKRDKIVILKGRGRIDSNTPNGAT--QH 279
Query: 292 ESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGK 351
S+P+KN P+ +Q QR EA G++I+ IL N E R S + +Q+ N E K
Sbjct: 280 SSTPIKN-VPPSRSRQDQRLEASGKIIKTILSNKEAR---SSNPSEHEQEGHMFNTEKDK 335
Query: 352 PLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRP 411
P + N D + N +RS D A LHGS + EK E+ RN+DRP
Sbjct: 336 ---RPPRAFNPRTIVKDQVV----ENAERSHFDEKANH-LHGSVPIGEKVERHARNRDRP 387
Query: 412 DRVVWTPRRSDVS-QANGERLSSSQPTQLLSDS------VEVTRGEMKDDM--SYGSKTV 462
DR VW RR D S A SSS+ Q+ S S + G+ K D GS+ V
Sbjct: 388 DRGVWAARRYDKSTSAGSSHPSSSEFPQMQSHSGDNILQLADGHGDRKTDTRGQGGSRGV 447
Query: 463 DIAAPTSGGSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
P G HRH RR K+ + + +RG+A G +E+QVW+QKSSSG
Sbjct: 448 ----PVENG-HRHANRRGLPRGPKETEISASVPDAKNSKRGSASYGAHERQVWVQKSSSG 502
>gi|39545659|emb|CAE03133.3| OJ000114_01.14 [Oryza sativa Japonica Group]
Length = 455
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 201/480 (41%), Positives = 274/480 (57%), Gaps = 72/480 (15%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
+K+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR Y+
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYSRLYLNF 67
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V EFAE+ NGHVFVNEKGAQFKA+VEYAPSQ+V K ++KD+R+GTI KDP+YLE
Sbjct: 68 KGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDPEYLE 127
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+ I+KPAE+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ+
Sbjct: 128 FLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQQ----- 182
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPASSSG 240
Y+L+++AK +K T+ +V KR++ +
Sbjct: 183 ---------------------------YVLRENAK-----EKPTYILVPKRDEH----AQ 206
Query: 241 KETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSA 300
+E A T G+ GS + ++ K+KI+LLKG+ R + D + +Q+ +P+KN+A
Sbjct: 207 REKDA--TSGGISGSAHV---AENKKEKIVLLKGRARVDSNTSD-VTSQQQSGTPMKNAA 260
Query: 301 SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKP-LPGPTSS 359
+ +Q R E GR+I+ IL N E R V Q Q+ + E P +P P S
Sbjct: 261 QSS-SRQDPRLEGSGRIIKTILSNKEGRH---VVTSQHDQEGHIITAEKRPPRIPNPRSV 316
Query: 360 PNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPR 419
V N K DD+ + LHGSG +SEK E+ RN+DRPDR VW PR
Sbjct: 317 VKDQVVENAE---------KNHLDDKHSH--LHGSGLISEKTERHARNRDRPDRGVWAPR 365
Query: 420 RSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSY--------GSKTVDIAAPTSGG 471
R D S + G SSS+ + + S E + D + G K ++I+A TS G
Sbjct: 366 RYDKSASGGTHSSSSEFSPMQQHSGE-NFCQQADGHRHANRRGPPRGLKEMEISASTSDG 424
>gi|92893882|gb|ABE91932.1| Nonsense-mediated decay UPF3 [Medicago truncatula]
Length = 500
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 212/523 (40%), Positives = 295/523 (56%), Gaps = 45/523 (8%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++ P V
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDDV 62
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLEFLKV 124
+FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+FL+
Sbjct: 63 IDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQQ 122
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----SLAVG 180
IAKP ENLPSAEIQL+++EA K+ +VTPLM++VR KRA ++G ++ SL+ G
Sbjct: 123 IAKPVENLPSAEIQLDKREA----VRKDIPIVTPLMDFVRHKRATKNGPRQQQHRSLSNG 178
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++ DQ
Sbjct: 179 KVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQN 238
Query: 236 ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSP 295
S+ T++S+ + + GI ++D+GKKK+LLLKG ERE V D+ Q +S
Sbjct: 239 PSNKSSNTASSDGNQTFDEN-GIAGSNDSGKKKLLLLKGNERETITVSDSDSMSQHHTSS 297
Query: 296 VKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPG 355
K S T KQ QR E GR+I+ IL N + RQ+QS + ++++Q N E K
Sbjct: 298 TKTILSSTALKQNQRHEGRGRIIKSILTNKDFRQSQS-SRAHSERQIQTSNLEREKQSTR 356
Query: 356 PTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVV 415
P HV + DG + R +HG SE+QE+R R+KDRPDR V
Sbjct: 357 PV-----HV---QLILKGTDGAPEN-------RITVHGLHVSSERQERRFRHKDRPDRGV 401
Query: 416 WTPRRSDVSQANGERLSSSQP------TQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTS 469
WT R + ++ SS T+L D+ GE+K S GS + +
Sbjct: 402 WTSRSNGGGESLSSSASSQVDPLEGGHTELKHDTPSARSGEVK---SLGS--FRASHSSE 456
Query: 470 GGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNE 511
G +H GRR KD DG + EGK ++ + G NE
Sbjct: 457 NGFSKHFGRRGPIYGVKDVDGYSILSEGKHPRKSSTSAYGSNE 499
>gi|147800057|emb|CAN72659.1| hypothetical protein VITISV_042717 [Vitis vinifera]
Length = 437
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 183/356 (51%), Positives = 225/356 (63%), Gaps = 34/356 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK PL RTKV++RHLPP +S+ L F +RY F PGK+S + Q YSRAY++
Sbjct: 76 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDF 135
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KD REGTIFKDP+YLE
Sbjct: 136 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYLE 195
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
L+++AKP ENLPSAEIQLER+EAE +GA K+T +V PLM++VRQKRAA+
Sbjct: 196 SLELLAKPFENLPSAEIQLERREAERAGAVKDTPIVMPLMDFVRQKRAAK---------- 245
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPASSSG 240
GRR STT Y+L+D+AKN KDKSTF +V KR DQ S
Sbjct: 246 --GRR---------LSTTM--------YVLRDAAKNTSAKDKSTFILVPKRADQLLSDKS 286
Query: 241 KETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSA 300
+A ++ G+ D GKKK+LLLKGKEREI H L +Q +SPVKN
Sbjct: 287 VNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH----HLQQQNVTSPVKNIL 342
Query: 301 SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 356
PKQ QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K P P
Sbjct: 343 GANAPKQNQRREGSGRIIRSILLNKDARQSQS-SMFQSEQQSQASNLEKEKRPPRP 397
>gi|357445255|ref|XP_003592905.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481953|gb|AES63156.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 565
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 203/551 (36%), Positives = 288/551 (52%), Gaps = 72/551 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++ P V
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDDV 62
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLEFLKV 124
+FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+FL+
Sbjct: 63 IDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQQ 122
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----SLAVG 180
IAKP ENLPSAEIQL+++EA P +VTPLM++VR KRA ++G ++ SL+ G
Sbjct: 123 IAKPVENLPSAEIQLDKREAVRKDIP----IVTPLMDFVRHKRATKNGPRQQQHRSLSNG 178
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++ DQ
Sbjct: 179 KVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQN 238
Query: 236 ASSSGKETSASE-------------------------TICGVEGSVGIPLTSDTGKKKIL 270
S+ T++S+ T+ V + G++
Sbjct: 239 PSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGRRSYC 298
Query: 271 LLKG-KEREI--PHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNET 327
LKG KE+++ V D+ Q +S K S T KQ QR E GR+I+ IL N +
Sbjct: 299 FLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKDF 358
Query: 328 RQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFA 387
RQ+QS + ++++Q N E K P HV + DG +
Sbjct: 359 RQSQS-SRAHSERQIQTSNLEREKQSTRPV-----HV---QLILKGTDGAPEN------- 402
Query: 388 RKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQP------TQLLS 441
R +HG SE+QE+R R+KDRPDR VWT R + ++ SS T+L
Sbjct: 403 RITVHGLHVSSERQERRFRHKDRPDRGVWTSRSNGGGESLSSSASSQVDPLEGGHTELKH 462
Query: 442 DSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSK 500
D+ GE+K S+ + + + G +H GRR KD DG + EGK +
Sbjct: 463 DTPSARSGEVKSLGSFRA-----SHSSENGFSKHFGRRGPIYGVKDVDGYSILSEGKHPR 517
Query: 501 RRGAAGSGGNE 511
+ + G NE
Sbjct: 518 KSSTSAYGSNE 528
>gi|147773122|emb|CAN62711.1| hypothetical protein VITISV_035617 [Vitis vinifera]
Length = 355
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 226/362 (62%), Gaps = 33/362 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK PL RTKV++RHLPP + + L F RY FRPGK+S + Q YSRAY++
Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KDSREGTIFKDP+YLE
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDSREGTIFKDPEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES--GAQESLA 178
FL+++AKP ENLPSAEIQLER+EAE RA +S G SL+
Sbjct: 121 FLELLAKPFENLPSAEIQLERREAE---------------------RAEKSFQGCIPSLS 159
Query: 179 VGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKRED 233
G++ RR+ +S+ S ++KRGS K++ Y+L+D+AKN KDKSTF++V KR+D
Sbjct: 160 NGKLSRRASGSSSGNPSLGSSKRGSGKRRLSTTMYVLRDAAKNTSAKDKSTFSLVPKRDD 219
Query: 234 QPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRES 293
Q S +A ++ G+ D GKKK+LLLKGKEREI H L +Q +
Sbjct: 220 QLLSDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH----HLQQQNVT 275
Query: 294 SPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQ-KMQNLNQENGKP 352
SPVKN PKQ QRRE GR+IR ILLN + RQ+QS QQ + NL +E P
Sbjct: 276 SPVKNILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPP 335
Query: 353 LP 354
P
Sbjct: 336 RP 337
>gi|357445259|ref|XP_003592907.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481955|gb|AES63158.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 498
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 179/452 (39%), Positives = 249/452 (55%), Gaps = 60/452 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++ P V
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDDV 62
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLEFLKV 124
+FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+FL+
Sbjct: 63 IDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQQ 122
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----SLAVG 180
IAKP ENLPSAEIQL+++EA P +VTPLM++VR KRA ++G ++ SL+ G
Sbjct: 123 IAKPVENLPSAEIQLDKREAVRKDIP----IVTPLMDFVRHKRATKNGPRQQQHRSLSNG 178
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++ DQ
Sbjct: 179 KVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQN 238
Query: 236 ASSSGKETSASE-------------------------TICGVEGSVGIPLTSDTGKKKIL 270
S+ T++S+ T+ V + G++
Sbjct: 239 PSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGRRSYC 298
Query: 271 LLKG-KEREI--PHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNET 327
LKG KE+++ V D+ Q +S K S T KQ QR E GR+I+ IL N +
Sbjct: 299 FLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKDF 358
Query: 328 RQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFA 387
RQ+QS + ++++Q N E K P HV + DG +
Sbjct: 359 RQSQS-SRAHSERQIQTSNLEREKQSTRPV-----HV---QLILKGTDGAPEN------- 402
Query: 388 RKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPR 419
R +HG SE+QE+R R+KDRPDR VWT R
Sbjct: 403 RITVHGLHVSSERQERRFRHKDRPDRGVWTSR 434
>gi|357445257|ref|XP_003592906.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481954|gb|AES63157.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 385
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 155/384 (40%), Positives = 219/384 (57%), Gaps = 45/384 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++ P V
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDDV 62
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLEFLKV 124
+FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+FL+
Sbjct: 63 IDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQQ 122
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----SLAVG 180
IAKP ENLPSAEIQL+++EA P +VTPLM++VR KRA ++G ++ SL+ G
Sbjct: 123 IAKPVENLPSAEIQLDKREAVRKDIP----IVTPLMDFVRHKRATKNGPRQQQHRSLSNG 178
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQP 235
+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++ DQ
Sbjct: 179 KVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQN 238
Query: 236 ASSSGKETSASE-------------------------TICGVEGSVGIPLTSDTGKKKIL 270
S+ T++S+ T+ V + G++
Sbjct: 239 PSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGRRSYC 298
Query: 271 LLKG-KEREI--PHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNET 327
LKG KE+++ V D+ Q +S K S T KQ QR E GR+I+ IL N +
Sbjct: 299 FLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKDF 358
Query: 328 RQTQSVTGVQPQQKMQNLNQENGK 351
RQ+QS + ++++Q N E K
Sbjct: 359 RQSQS-SRAHSERQIQTSNLEREK 381
>gi|255539410|ref|XP_002510770.1| conserved hypothetical protein [Ricinus communis]
gi|223551471|gb|EEF52957.1| conserved hypothetical protein [Ricinus communis]
Length = 423
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 148/199 (74%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
KVVIRHLPPSLSQ+ L + F +NWFCFRP SS+K+ RYSRAY+E K PA +
Sbjct: 14 KVVIRHLPPSLSQSHLFSQFHHLLLLSFNWFCFRPPNSSHKNHRYSRAYIEFKSPADAGQ 73
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKP 128
FA L +GH+FV++ GAQFKAIVEYAPSQRVPKP KD REGTI+ DPDYLEFLK+IAKP
Sbjct: 74 FAHLFHGHLFVDDNGAQFKAIVEYAPSQRVPKPSPVKDGREGTIYTDPDYLEFLKLIAKP 133
Query: 129 AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGRRSRA 188
+NLPSA +Q + ++A SGA KE + TPLME+VRQKRAAE G Q SL + +R+ +
Sbjct: 134 VDNLPSASVQFQIEDAAQSGAAKEPPITTPLMEFVRQKRAAEDGNQGSLVAVKGSKRAGS 193
Query: 189 ASASKTSSTTTKRGSEKKK 207
AS K S+ KRG+EKKK
Sbjct: 194 ASVIKPGSSANKRGAEKKK 212
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 117/224 (52%), Gaps = 33/224 (14%)
Query: 303 TVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTS---S 359
T PK+ QR A +I+ ILLNNET Q+QS+ Q + + QNL E+GK P P + +
Sbjct: 228 TAPKRSQRLRASEMIIKSILLNNETHQSQSLNATQHRHETQNLIVEHGKKWPRPMNKQVA 287
Query: 360 PNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPR 419
NGHV ++ +DG+TKR+ + +F K + G+ S KQ+K KDRPD VW P
Sbjct: 288 INGHVPGSEPSGPIYDGDTKRN-NSKFLTKGRYSVGSASAKQQKCI--KDRPDPGVWAPL 344
Query: 420 RSDVSQA-NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGR 478
V Q+ N E+LSS+ LL S S GSH+H G
Sbjct: 345 CHSVVQSDNEEKLSST----LLQHS----------------------GMNSKGSHKHFGH 378
Query: 479 RAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 522
A K DG E KSSKR GA+G G +KQVW+QKS+SG
Sbjct: 379 NVAAQRMKGDGSRIASEHKSSKRGGASGYGVQKKQVWVQKSASG 422
>gi|414587119|tpg|DAA37690.1| TPA: hypothetical protein ZEAMMB73_050614 [Zea mays]
Length = 270
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 176/263 (66%), Gaps = 23/263 (8%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR Y+
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K P V EFAE+ NGH+FVNEKGAQFKA VEYAPSQ+VPK +KD REGT+ KDP+YLE
Sbjct: 61 KHPEDVVEFAEVFNGHIFVNEKGAQFKAFVEYAPSQQVPKSNVKKDGREGTVTKDPEYLE 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
FL+ I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ
Sbjct: 121 FLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQ------ 174
Query: 181 RVGRR-SRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKREDQPA 236
R G R SR + TSS++ KR EK++ Y+++DS K+K T+ +V KRE+
Sbjct: 175 RPGSRLSRKVAGVVTSSSSPKRSFEKRRSSTYVVRDSI-----KEKPTYIMVPKREEH-- 227
Query: 237 SSSGKETSASETICGVEGSVGIP 259
T + + G G + +P
Sbjct: 228 ------TQREKIVSGNSGGMLVP 244
>gi|359486243|ref|XP_002264276.2| PREDICTED: regulator of nonsense transcripts 3B-like [Vitis
vinifera]
Length = 256
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 144/187 (77%), Gaps = 5/187 (2%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK PL RTKVV+RHLPP++S+ L F RY FRPGK+S K Q YSRAY++
Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KD REGTIFKDP+Y+E
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYME 120
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESL--- 177
F++++AKP ENLPSAEIQLER+EAE +GA K+T +VTPLM++VRQKRAA+ ++ ++
Sbjct: 121 FVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRVAIVYS 180
Query: 178 --AVGRV 182
A+GR+
Sbjct: 181 LYALGRL 187
>gi|168052934|ref|XP_001778894.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669763|gb|EDQ56344.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1124
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 148/217 (68%), Gaps = 14/217 (6%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDH----FNDRYNWFCFRPGKSSYKHQRYSRA 56
MKE RTKV +RHLPPSL+ A+F+D + Y W+ + PGKSS+K Q YSRA
Sbjct: 26 MKEQQARTKVSVRHLPPSLA----WAVFQDQIAVKYAGTYTWWSYHPGKSSHKRQVYSRA 81
Query: 57 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 116
Y+ KKP V +F E NGHVFVNE+GAQ+KA+VEYAP QRVPKP S+KD REGTI DP
Sbjct: 82 YINFKKPEDVIDFYEDFNGHVFVNERGAQYKALVEYAPYQRVPKPRSKKDVREGTISTDP 141
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPLMEYVRQKRAAES 171
+YL F++ +AKPAE LPSAE+QLERKEAE SG K+ +VVTPLMEYVR +RAA+S
Sbjct: 142 EYLAFVEQLAKPAEYLPSAEVQLERKEAEKASNLASGTSKDAVVVTPLMEYVRSRRAAKS 201
Query: 172 GAQESL-AVGRVGRRSRAASASKTSSTTTKRGSEKKK 207
Q + + ++ RS S T KRGSEK +
Sbjct: 202 TPQRGMSSSAKLAARSGGVPVSAFKLATQKRGSEKGR 238
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 119/294 (40%), Gaps = 63/294 (21%)
Query: 239 SGKETSASETICGVEGS--------VGIPLTSDTGKKKILLLKGKEREIPHVPDALLD-- 288
SG TS + + V GS V P + +K++L+ K K++E+ P+ +
Sbjct: 341 SGSRTSVAGKVSAVNGSGEGLTAGDVREPHKREYKRKQMLVAKDKDKELAVDPEQAVSVA 400
Query: 289 -----------KQRESSPVKNSA-------------------SPTVPKQIQRREAGGRLI 318
+ R S P K +A S + KQI R+E GGR
Sbjct: 401 NSVGVGTTNNQRHRSSGPAKVAAGGVQQMQSAVAHRATSLGDSISSGKQIHRQEYGGR-- 458
Query: 319 RKILLNNETRQTQSVTGV------QPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIF 372
L Q S G+ QPQ + + +P P P + S +
Sbjct: 459 --TSLRGTPAQGSSAPGLGSDSHAQPQASGTQVEKVGKRP-PRPQAIRLAGKDQAISLVS 515
Query: 373 SFDGNTKRSSDDRFARKVLHGSGAVS-----EKQE-KRTRNKDRPDRVVWTPRRSD--VS 424
S + + + + + K + GA S +KQ+ +R RNKDRPDR VWTPRR +
Sbjct: 516 SVEAEGQAGNGEERSVKQVANDGAASSPSLLDKQDARRLRNKDRPDRPVWTPRRREGVTG 575
Query: 425 QANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGR 478
+A+G ++S + + S E T GSK D A +SG RHNGR
Sbjct: 576 KADGTAFANSPASAAGTASTEGTSSTASSGTDVGSKN-DRAERSSG---RHNGR 625
>gi|359486154|ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852735 [Vitis vinifera]
Length = 322
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 178/315 (56%), Gaps = 31/315 (9%)
Query: 208 YILKDSAKNARRKDKSTFTVVAKREDQPASSSGKETSASETICGVEGSVGIPLTSDTGKK 267
Y+L+D+AK+ KDKSTF +V KR+DQ S +A +E G+ D GKK
Sbjct: 2 YVLRDTAKSTSAKDKSTFILVPKRDDQLLSDKSVNLAAGGGAEALEEESGVSGAVDAGKK 61
Query: 268 KILLLKGKEREIPHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNET 327
K+LLLKGKEREI H L +Q +SPVKN PKQ QRRE GR+IR ILLN +
Sbjct: 62 KVLLLKGKEREISH----HLLQQNVTSPVKNILGANAPKQNQRREGSGRIIRSILLNKDA 117
Query: 328 RQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFA 387
RQ+QS Q +Q+ Q N E K P P P+ + + + T + DD+
Sbjct: 118 RQSQSSM-FQTEQQSQASNLEKEKRPPRP---PHIQLASKE---------TNGAQDDKVV 164
Query: 388 RKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEV 446
+H VSEKQ+KRTRNKDRPDR VWTP RRSD S A+ E LSSS SD E
Sbjct: 165 GNDVH--SFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSSSASQPTSSDFPEG 222
Query: 447 TRGEMKDDMSYGSKTVDIAAPTSG---------GSHRHNGRRAATNITKD-DGCINMIEG 496
+ GEM+ DMS +++ ++ A SG GSH+H+GRR T+ KD DG + EG
Sbjct: 223 SHGEMRSDMS-NARSGEVKALGSGRGGHSALDNGSHKHSGRRGPTHSVKDADGSSIVSEG 281
Query: 497 KSSKRRGAAGSGGNE 511
K SKR A G G +E
Sbjct: 282 KHSKRGSAPGYGSHE 296
>gi|144583661|gb|ABP01544.1| UPF3, partial [Nicotiana attenuata]
Length = 168
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 119/169 (70%), Gaps = 5/169 (2%)
Query: 100 KPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPL 159
K +S+KD+RE TI KDP+YLEFL+ +AKP ENLPSAEIQLERKEAE +G+ K+ +VTPL
Sbjct: 1 KHWSKKDAREATILKDPEYLEFLEFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPL 60
Query: 160 MEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK----YILKDSAK 215
M+Y+RQKRAA+ GA+ S++ GR +R AS+ SS +KRGSEK+ Y+L+DS+K
Sbjct: 61 MDYIRQKRAAKGGARRSISNGRSTKRVGGASSRTPSSAASKRGSEKRTSTTMYVLRDSSK 120
Query: 216 NARRKDKSTFTVVAKREDQPASSSGKETSASETICGVEGSVGIPLTSDT 264
KDKS + +V KR+DQ S ++ I VEG +G +T+D+
Sbjct: 121 AGNGKDKS-YILVPKRDDQQLSDKSGTSAPGSGIDLVEGEIGRSVTADS 168
>gi|224119916|ref|XP_002331094.1| predicted protein [Populus trichocarpa]
gi|222872822|gb|EEF09953.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 81/108 (75%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
+TKVV+RHLPP +SQ + F+ RYNW +RPGKSS KHQ SRAY++ K+P V
Sbjct: 8 KTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSYRPGKSSQKHQSCSRAYIDFKRPDDV 67
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
+FAE NGH+FVNEKG QFKAIVEYAPSQ VPK +S+KD REGTI K
Sbjct: 68 IDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILK 115
>gi|147777847|emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera]
Length = 304
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 124/275 (45%), Positives = 157/275 (57%), Gaps = 37/275 (13%)
Query: 249 ICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSASPTVPKQI 308
+ GV G+V D GKKK+LLLKGKEREI H L +Q +SPVKN PKQ
Sbjct: 5 VSGVSGAV------DAGKKKVLLLKGKEREISH----HLLQQNVTSPVKNILGANAPKQN 54
Query: 309 QRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNND 368
QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K P P P+ + + +
Sbjct: 55 QRREGSGRIIRSILLNKDARQSQS-SMFQTEQQSQASNLEKEKRPPRP---PHIQLASKE 110
Query: 369 SPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP-RRSDVSQAN 427
T + DD+ +H VSEKQ+KRTRNKDRPDR VWTP RRSD S A+
Sbjct: 111 ---------TNGAQDDKVVGNDVH--SFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHAS 159
Query: 428 GERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---------GSHRHNGR 478
E LSSS SD E + GEM+ DMS +++ ++ A SG GSH+H+GR
Sbjct: 160 DESLSSSASQPTSSDFPEGSHGEMRSDMS-NARSGEVKALGSGRGGHSALDNGSHKHSGR 218
Query: 479 RAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEK 512
R T+ KD DG + EGK SKR A G G +E+
Sbjct: 219 RGPTHSVKDADGSSIVSEGKHSKRGSAPGYGSHEE 253
>gi|302781276|ref|XP_002972412.1| hypothetical protein SELMODRAFT_97155 [Selaginella moellendorffii]
gi|300159879|gb|EFJ26498.1| hypothetical protein SELMODRAFT_97155 [Selaginella moellendorffii]
Length = 118
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK+PL RTKVV+R LPP+LS++ L++ + F Y W FRPGKS+ +Q +SRAY+E
Sbjct: 1 MKDPLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKST--NQIHSRAYIEF 58
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
++P V F E +GHVFVNEKG+Q+KA+VEYAP QRVP +KD REG+I +
Sbjct: 59 ERPEDVLAFHEDFHGHVFVNEKGSQYKAMVEYAPYQRVPDLRVKKDGREGSILR 112
>gi|302804985|ref|XP_002984244.1| hypothetical protein SELMODRAFT_119852 [Selaginella moellendorffii]
gi|300148093|gb|EFJ14754.1| hypothetical protein SELMODRAFT_119852 [Selaginella moellendorffii]
Length = 118
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
M++PL RTKVV+R LPP+LS++ L++ + F Y W FRPGKS+ +Q +SRAY+E
Sbjct: 1 MRDPLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKST--NQIHSRAYIEF 58
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
++P V F E +GHVFVNEKG+Q+KA+VEYAP QRVP +KD REG+I +
Sbjct: 59 ERPEDVLAFHEDFHGHVFVNEKGSQYKAMVEYAPYQRVPDLRVKKDGREGSILR 112
>gi|384246467|gb|EIE19957.1| hypothetical protein COCSUDRAFT_44353 [Coccomyxa subellipsoidea
C-169]
Length = 382
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 6/163 (3%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
++RTKVVIR LPPS++ D+ L D N +YNWF F GK+S + +SR YV + P+
Sbjct: 1 MERTKVVIRKLPPSIADADVRELV-DSTNVKYNWFSFVQGKTSVRKVVHSRCYVNFEDPS 59
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + H FV ++GAQF++ VEYAP Q+VP+ ++D REGT+ KDP+YL F++
Sbjct: 60 DIPAFKAAVEAHAFVTDRGAQFRSSVEYAPFQKVPQGKPKRDPREGTLDKDPEYLAFVES 119
Query: 125 I-AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
+ A+P + + A G P+ VT LM Y++ K
Sbjct: 120 LNAQPEALPAAEAAGSSGQRAGQEGGPQ----VTALMAYLQDK 158
>gi|168003533|ref|XP_001754467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694569|gb|EDQ80917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 987
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 89/207 (42%), Gaps = 86/207 (41%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDH----FNDRYNWFCFRPGKS---------- 46
MKE RTKV +RHLPPSLS+ A+F+D + Y W+ + PGK+
Sbjct: 26 MKEQQARTKVAVRHLPPSLSE----AVFQDQIAGKYAGAYTWWSYHPGKNRSSRKRRQYV 81
Query: 47 ----------------SYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK-------- 82
S+K Q YSRAY+ KKP V +F E NGHVFVNE+
Sbjct: 82 AHNPRNQFDAVGAIACSHKRQVYSRAYINFKKPEDVIDFYEDFNGHVFVNERVMDFCKHW 141
Query: 83 --------------------------------------------GAQFKAIVEYAPSQRV 98
GAQ+KA+VEYAP QRV
Sbjct: 142 NEGIFHFFCVGHHKLEVESGCDYTLVSRFLMLGDSSRTERLEECGAQYKALVEYAPYQRV 201
Query: 99 PKPFSRKDSREGTIFKDPDYLEFLKVI 125
PKP S+KD REGTIFK + V+
Sbjct: 202 PKPRSKKDVREGTIFKGATMIVITTVL 228
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 18/107 (16%)
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPLMEYVRQKRAA 169
DP+YL F++ +AKPAE LPSAEIQLER+EAE +SG K+ +VVTPLME+VR +RAA
Sbjct: 277 DPEYLAFVEQLAKPAEYLPSAEIQLERREAEKAASLVSGTSKDAVVVTPLMEFVRSRRAA 336
Query: 170 ESGAQE---------SLAVGRVGRRSRAASASKTSSTTTKRGSEKKK 207
+S Q +A+G + SAS S + KR SEK +
Sbjct: 337 KSIPQVILPSSVSLFGMAMGDL----EGVSASAYSLASQKRSSEKGR 379
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%), Gaps = 1/24 (4%)
Query: 398 SEKQE-KRTRNKDRPDRVVWTPRR 420
SEKQ+ +R RNKDRPDR VWTPRR
Sbjct: 684 SEKQDARRLRNKDRPDRPVWTPRR 707
>gi|296081104|emb|CBI18298.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 72/133 (54%), Gaps = 32/133 (24%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK PL RTKV++RHLPP + + L F RY FRPGK+S + Q YSRAY++
Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE +GHVFVNE KDP+YLE
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNE--------------------------------KDPEYLE 88
Query: 121 FLKVIAKPAENLP 133
FL+++AKP ENLP
Sbjct: 89 FLELLAKPFENLP 101
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 238 SSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVK 297
+SG E E+ GV G+V D GKKK+LLLKGKEREI H L +Q +SPVK
Sbjct: 127 TSGAEALKEES--GVSGAV------DAGKKKVLLLKGKEREISH----HLQQQNVTSPVK 174
Query: 298 NSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQ-KMQNLNQENGKPLP 354
N PKQ QRRE GR+IR ILLN + RQ+QS QQ + NL +E P P
Sbjct: 175 NILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPPRP 232
>gi|427784155|gb|JAA57529.1| Putative regulator of nonsense transcripts 3a [Rhipicephalus
pulchellus]
Length = 415
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVV+R LPP+++++ L Y +F G S +SRAY+ +F
Sbjct: 33 TKVVVRRLPPTMTEDQFLEQISPVPESDYMYFVK--GDLSLGPHAFSRAYINFVNQDEIF 90
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEFLKVIA 126
F E + ++FV+EKG ++ A+VEYAP Q++PK +R KD + GTI +DP+Y+ FL+ +
Sbjct: 91 IFKEKFDDYIFVDEKGNEYPALVEYAPFQKIPKRRNRKKDPKCGTIEQDPEYINFLESLE 150
Query: 127 KPAE-NLPSAEI---QLERKEAELSGAPKETLVVTPLMEYVRQKR 167
+P E LPS + ++E +E E+ VVTPL+EY++Q++
Sbjct: 151 QPEEVTLPSIDTYIEEIEAREKEIKANNGCLKVVTPLIEYLQQRK 195
>gi|296081100|emb|CBI18294.3| unnamed protein product [Vitis vinifera]
Length = 273
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 72/133 (54%), Gaps = 32/133 (24%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK PL RTKV++RHLPP +S+ L F +RY F PGK+S + Q YSRAY++
Sbjct: 1 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K+P V EFAE +GHVFVNE KDP+YLE
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNE--------------------------------KDPEYLE 88
Query: 121 FLKVIAKPAENLP 133
L+++AKP ENLP
Sbjct: 89 SLELLAKPFENLP 101
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 234 QPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRES 293
Q +SG E E+ GV G+V D GKKK+LLLKGKEREI H L +Q +
Sbjct: 123 QVQKTSGAEALKEES--GVSGAV------DAGKKKVLLLKGKEREISH----HLQQQNVT 170
Query: 294 SPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPL 353
SPVKN PKQ QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K
Sbjct: 171 SPVKNILGANAPKQNQRREGSGRIIRSILLNKDARQSQS-SMFQSEQQSQASNLEKEKRP 229
Query: 354 PGP 356
P P
Sbjct: 230 PRP 232
>gi|430813479|emb|CCJ29190.1| unnamed protein product [Pneumocystis jirovecii]
Length = 395
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 11/173 (6%)
Query: 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSY---KHQRYSRAYV 58
+P R KVVIR+LPP LS+ L ++ ++ R W F PGK S K+ +Y+RAY+
Sbjct: 18 QPATRLKVVIRYLPPDLSEQTFKELVKEWIDEERVEWSSFYPGKVSSNRNKNDKYARAYI 77
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
+ K P + F + H+F +EKG + +VE+AP Q+VP+ +K D+R+GTI D +
Sbjct: 78 KFKSPEALIAFHKGFGAHLFTDEKGKGQRVLVEFAPFQKVPRLERQKHDARQGTIDDDAE 137
Query: 118 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR-QKRAA 169
++ F + + +N P E Q +++E ++ AP T +TPL+EY+R QK A
Sbjct: 138 FIAFQETLKNTNKN-PEEEAQNKKEEDDM--APIGT--ITPLIEYLRVQKETA 185
>gi|307110922|gb|EFN59157.1| hypothetical protein CHLNCDRAFT_50004 [Chlorella variabilis]
Length = 119
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
R KVV+R LPPSL + R+ + +R +WF + GK+S K +SRAY+ K A V
Sbjct: 6 RCKVVVRRLPPSLQEEAFRGAVRE-WIERADWFSYVQGKASSKDLLHSRAYLRFKDAADV 64
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 119
F + +GH FVNE+G QF+ VEYA QRVP+ ++D +EGTI +D DYL
Sbjct: 65 PRFQQAWDGHAFVNERGTQFRCQVEYAAYQRVPRQRVKRDPKEGTIERDADYL 117
>gi|390348029|ref|XP_780145.3| PREDICTED: uncharacterized protein LOC574684 [Strongylocentrotus
purpuratus]
Length = 373
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP+L++ + + D F D ++ + +S +H YSRAY+ K +
Sbjct: 16 TKVVIRCLPPALTEEEFREIV-DPFPDNEYFYYVKADRSLGEHA-YSRAYINFMKEEDII 73
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIA 126
F + +GH FVN +G + A+VE+AP Q+VPK +K D+R TI +D DY +F++ +
Sbjct: 74 PFRDTWDGHEFVNGQGLVYPAVVEFAPYQKVPKVIGKKVDARTATIEEDSDYKKFVETLN 133
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
E+ SAE LE E K V+TPL+E+++ KR
Sbjct: 134 AEIEHPTSAETMLEEIEMRAKEPGK---VMTPLIEFLKVKR 171
>gi|241723783|ref|XP_002404304.1| regulator of nonsense transcripts 3B, putative [Ixodes scapularis]
gi|215505390|gb|EEC14884.1| regulator of nonsense transcripts 3B, putative [Ixodes scapularis]
Length = 452
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP++S++ L + Y +F G S +SRAY+ +F
Sbjct: 33 TKVVIRRLPPTMSEDQFLDQISPVPENDYMYFV--KGNKSLGPNAFSRAYINFINQEEIF 90
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEFLKVIA 126
F E + +VF++EKG ++ AIVEYAP Q++PK +R KD + GTI +DP+YL+FL+ +
Sbjct: 91 IFKEKFDEYVFLDEKGNEYPAIVEYAPFQKIPKRRTRKKDPKCGTIEQDPEYLKFLESLE 150
Query: 127 KPAE-NLPSAEIQLE 140
+P E +LPS + +E
Sbjct: 151 QPEEVSLPSIDTYIE 165
>gi|260796733|ref|XP_002593359.1| hypothetical protein BRAFLDRAFT_70868 [Branchiostoma floridae]
gi|229278583|gb|EEN49370.1| hypothetical protein BRAFLDRAFT_70868 [Branchiostoma floridae]
Length = 529
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 15/167 (8%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
TKVVIR LPPSL+Q L L DH ++F F S + RAY+ K P
Sbjct: 36 TKVVIRRLPPSLTQETLVEELGPLPDH-----DFFLFVAADMSLVPHAFCRAYINFKNPE 90
Query: 65 GVFEFAELLNGHVFVNE----KGAQFKAIVEYAPSQRVPKPFS-RKDSREGTIFKDPDYL 119
+ F + +G++F + K ++ AIVE+AP Q+VPK S +KD++ TI +DPDYL
Sbjct: 91 EIISFKDKFDGYIFNDTTSSGKKMEYPAIVEFAPYQKVPKGRSKKKDTKCATIEQDPDYL 150
Query: 120 EFLKVIAKP-AENLPSAEIQLERKEAELSGAPK-ETLVVTPLMEYVR 164
+FL+ + + P A I+ +E E K ET + TPL+++++
Sbjct: 151 KFLESLKNDNTGDAPPANIESLLEEIEARDRKKEETKMTTPLLDFIK 197
>gi|391331227|ref|XP_003740051.1| PREDICTED: uncharacterized protein LOC100906049 [Metaseiulus
occidentalis]
Length = 497
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R +PPS+++ D L F ++ + F S +SRAY+ L+ V E
Sbjct: 34 KIVVRRMPPSMTETDFLNQFSPLPE--HDSYYFADADGSMGGNSFSRAYIALRSHQDVLE 91
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVI-A 126
F + + +V ++E+G ++ +VE+AP Q++P+ +K DS+ GT+ DP+YLEFL+ +
Sbjct: 92 FRDKWDDYVCLDERGQEYPLVVEFAPFQKMPRKKPKKADSKCGTLENDPEYLEFLETMDL 151
Query: 127 KPAENLPSAEI---QLERKEAEL---SGAPKETLVVTPLMEYV 163
+ LPS E +LER++ EL +G P V+TPL+E+V
Sbjct: 152 EEGIELPSMETTVEELERRDRELRANNGVPN---VLTPLIEFV 191
>gi|115397199|ref|XP_001214191.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192382|gb|EAU34082.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 546
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 26/178 (14%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K+++R LPP L+QN+ + D + + +WF ++PGK S K R SRAY+ +
Sbjct: 40 RLKLLVRRLPPGLTQNEFESAIGDEWKVGAGKVDWFQYKPGKVSKDPAKPSRPSRAYIHV 99
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFK------AIVEYAPSQRVPKPFSRKDSREGTIFK 114
+ + + FV+ + A +E+AP ++P RKD+R+GTI +
Sbjct: 100 VSSEYIVPLSNKVRQTSFVDARNTSNDPVLLGPAALEFAPYAKIPGSRVRKDARQGTIDQ 159
Query: 115 DPDYLEFLKVIAKP-AENLPSAEIQLERKEAELSGAP---KETLVVTPLMEYVRQKRA 168
DPD++ FL+ + +P A+ P E +G P KET+ TPL++Y+++K+A
Sbjct: 160 DPDFIAFLESLTQPIAKPAP----------VEATGEPEDKKETITTTPLVQYIKEKKA 207
>gi|91076870|ref|XP_974984.1| PREDICTED: similar to Upf3 regulator of nonsense transcripts-like
protein B [Tribolium castaneum]
gi|270001957|gb|EEZ98404.1| hypothetical protein TcasGA2_TC000872 [Tribolium castaneum]
Length = 450
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP++ Q L + Y++ G +S +SRAY+ P ++
Sbjct: 27 TKVVIRRLPPNMDQETFLNQISPVPS--YDYLYMVKGDASLGENSFSRAYINFVNPNDIY 84
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEFLKVI 125
+F E + +VF++ G ++ A+VE+A Q++PK + R D + GTI DP YLEF+++I
Sbjct: 85 DFKEKFDNYVFLDSAGHEYAAVVEFAAFQKIPKRRNKVRVDPKVGTIESDPYYLEFVEMI 144
Query: 126 AKPAE--NLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
KP E P Q+ + TPL+EYV+ KR
Sbjct: 145 NKPPEPDEKPEYSYQI--------TTENKNETSTPLLEYVKNKRV 181
>gi|391865862|gb|EIT75141.1| hypothetical protein Ao3042_08989 [Aspergillus oryzae 3.042]
Length = 575
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K+++R LPP L+Q + A + + +WF ++PGK S K R SRAYV +
Sbjct: 44 RLKLLVRRLPPGLTQAEFEAAVGPEWKLGAGKIDWFQYKPGKVSKDPAKPSRPSRAYVHV 103
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFK 114
+ + + F + + I VEYAP +VP RKD+R+GTI +
Sbjct: 104 VSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQ 163
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
DPD++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 164 DPDFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 211
>gi|238490958|ref|XP_002376716.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
flavus NRRL3357]
gi|220697129|gb|EED53470.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
flavus NRRL3357]
Length = 575
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K+++R LPP L+Q + A + + +WF ++PGK S K R SRAYV +
Sbjct: 44 RLKLLVRRLPPGLTQAEFEAAVGPEWKLGAGKIDWFQYKPGKVSKDPAKPSRPSRAYVHV 103
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFK 114
+ + + F + + I VEYAP +VP RKD+R+GTI +
Sbjct: 104 VSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQ 163
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
DPD++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 164 DPDFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 211
>gi|383862435|ref|XP_003706689.1| PREDICTED: uncharacterized protein LOC100878124 [Megachile
rotundata]
Length = 620
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 19/169 (11%)
Query: 8 TKVVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
TKVVIR LPP+++Q+ L + +H ++ F S +SRAY+ +
Sbjct: 40 TKVVIRRLPPTMTQDQFLEQVSPLPEH-----DYLYFVKADMSMGQFAFSRAYINFIEQQ 94
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYLEFL 122
+F F E + +VFV+ KG ++ A+VE+AP QR+PK +KD + GTI DP Y+ FL
Sbjct: 95 DIFMFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDPYYISFL 154
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
+ + AE + + + E S P + + TPL+EY++Q++
Sbjct: 155 ESLKN-----QEAESNVAQPKTEYSYQPPDNTPKKVTTTPLLEYLKQRK 198
>gi|159465777|ref|XP_001691099.1| UPF3 protein [Chlamydomonas reinhardtii]
gi|158279785|gb|EDP05545.1| UPF3 protein [Chlamydomonas reinhardtii]
Length = 371
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
MK P Q+TKV++R LPP++S++ ++ RYNW + GK S K SRAY+
Sbjct: 1 MKPPRQKTKVLVRKLPPAMSEDTFKSVLDSVAAGRYNWLSYYAGKVSLKRVASSRAYINF 60
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
V+ F + +GHVF++ +G Q++ VEYAP Q++P ++ EGTI
Sbjct: 61 VSEEDVYNFKQRFDGHVFISRQGNQYRCAVEYAPLQKMPTLEAKPHPLEGTI 112
>gi|443693452|gb|ELT94809.1| hypothetical protein CAPTEDRAFT_137621, partial [Capitella teleta]
Length = 172
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 14/171 (8%)
Query: 9 KVVIRHLPPSLSQNDLLAL---FRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
++V+R LPPSL+ + + L DH ++F F S Q ++RAY+
Sbjct: 1 QIVVRRLPPSLTAEEFIDLTSPIPDH-----DFFYFTQDNSKMGEQAFTRAYINFVSYED 55
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLK- 123
+ F E +G++FV++KG +F A+VE+AP Q+VPK +RK D + TI DPD+L+FL
Sbjct: 56 ILIFQEKFDGYIFVDQKGNEFPAVVEFAPFQKVPKKKTRKPDVKMATIENDPDFLKFLDG 115
Query: 124 VIAKPAENLPSAEIQLERKEA---ELSGAPKETLVVTPLMEYV-RQKRAAE 170
+ K +E+ P+ + LE EA EL G ++ + Y+ R++R+ E
Sbjct: 116 LDQKSSESAPAVDTILEEIEAKERELKGQSSSSVWRFIITHYICREQRSIE 166
>gi|402225519|gb|EJU05580.1| hypothetical protein DACRYDRAFT_104067 [Dacryopinax sp. DJM-731
SS1]
Length = 469
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSYKHQRY---SRAYVELKK 62
R KV++R LPP+L + N+ W F GK K + SRAY+ K
Sbjct: 40 RLKVIVRRLPPNLPEAVFWKSVEPWVNEENTTWRIFYSGKIKPKLENENVPSRAYIMFKT 99
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
P V +F+ NGH F +++G + +A+VE+AP Q+VP + D R+GTI +DPD++ F+
Sbjct: 100 PEQVAQFSSAYNGHAFRDKQGRESQAVVEFAPYQKVPITNVKPDVRQGTIDQDPDFMSFM 159
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
+ P E A + E +S AP V+ PL+E + Q+
Sbjct: 160 TNLNAPVEYESLASL-----EKGVSQAPALEPVIAPLIEALIQQ 198
>gi|405955505|gb|EKC22596.1| Regulator of nonsense transcripts 3A [Crassostrea gigas]
Length = 638
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 13/164 (7%)
Query: 12 IRHLPPSLSQNDLLALFR---DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+R LPPSL+ L+ +H ++F F S ++RAY+ PA +F
Sbjct: 1 MRRLPPSLTPESLIEQISPLPEH-----DFFYFVKADMSLGINAFTRAYINFMNPAEIFN 55
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIAK 127
F + +G+VF++ KG ++ AIVE+AP Q+VPK ++K DS++GT+ +D DYL+F +++
Sbjct: 56 FRDKFDGYVFIDGKGNEYPAIVEFAPFQKVPKRKTKKPDSKKGTLEQDADYLKFKEMLES 115
Query: 128 PAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
P + P + + K TPL+EY++++R
Sbjct: 116 PGNDDPKTIDEYLEELEAKEKEMKSNHGCVKTSTPLIEYLKKRR 159
>gi|328782061|ref|XP_624605.3| PREDICTED: hypothetical protein LOC552225 isoform 2 [Apis
mellifera]
Length = 614
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP+++Q L + Y +F S ++RAY+ + +F
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPENDYLYFV--KADMSMGQYAFARAYINFVEQQDIF 97
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEFLKVI 125
F E + +VF++ KG ++ A+VE+AP QR+PK + +KD + GTI DP Y+ FL+
Sbjct: 98 MFREKFDNYVFIDSKGTEYPAVVEFAPFQRLPKKRTGKKKDLKCGTIESDPYYISFLETR 157
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
AE + + + E S P + + TPL+EYV+Q++
Sbjct: 158 KN-----QEAESNISQPKTEYSYQPPDNTPKKITTTPLLEYVKQRK 198
>gi|328782059|ref|XP_003250077.1| PREDICTED: hypothetical protein LOC552225 isoform 1 [Apis
mellifera]
Length = 623
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP+++Q L + Y +F S ++RAY+ + +F
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPENDYLYFV--KADMSMGQYAFARAYINFVEQQDIF 97
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEFLKVI 125
F E + +VF++ KG ++ A+VE+AP QR+PK + +KD + GTI DP Y+ FL+
Sbjct: 98 MFREKFDNYVFIDSKGTEYPAVVEFAPFQRLPKKRTGKKKDLKCGTIESDPYYISFLET- 156
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
K E AE + + + E S P + + TPL+EYV+Q++
Sbjct: 157 RKNQE----AESNISQPKTEYSYQPPDNTPKKITTTPLLEYVKQRK 198
>gi|449669494|ref|XP_002161632.2| PREDICTED: uncharacterized protein LOC100202729 [Hydra
magnipapillata]
Length = 555
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 53 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
++RAYV + V +F +G++F + G +F A++EYAP Q++P+ + D + T
Sbjct: 77 FTRAYVNFIEYNDVLDFRNKFDGYIFYDNLGNEFSAVIEYAPCQQIPRTKQKIDQKINTF 136
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 172
KDP+YL+FL+ + K E LPSAE +E +A K TPL +Y+++KR +
Sbjct: 137 DKDPEYLQFLENLGKQVELLPSAEKYIEELQALTIADKKREKTRTPLTDYLKEKRDSRIA 196
Query: 173 A-QESLAVGRVGRRSRAASASKTSSTTTK 200
A Q ++A R+ R KT ++ K
Sbjct: 197 ARQLAIAQREKERKQRLEEKEKTKASRKK 225
>gi|402084290|gb|EJT79308.1| hypothetical protein GGTG_04393 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 705
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 26/224 (11%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P++ KVV+R LPP +++ + ++ D + + WF F+ GK S K R SR
Sbjct: 38 KTPVEGQKVVLRRLPPGITEQETVSFLSDEWKPGGAKVGWFSFQAGKISKDPAKPSRPSR 97
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS------QRVPKPFSRKDSRE 109
AY+ + K V E + +++ K + + P ++VP R D+R
Sbjct: 98 AYLHVLKTEQVMGLVEHVRNTEWLDAKDTSASSCLVGPPMLDISIYKKVPSGKVRADARA 157
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
GTI +DP++++FL+ +A P ++ P A+ E E ++ A TPL++Y+R+K+A
Sbjct: 158 GTIDQDPEFMDFLEALANPNKD-PEADYTAEEDEKLITKA-----SSTPLIDYLREKKAN 211
Query: 170 ESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDS 213
+ A+ES A G+ G+ SR S T R +E K KDS
Sbjct: 212 K--AKES-ATGKSGKHSR-----HESGTAKGRSAEDSKKRTKDS 247
>gi|317145669|ref|XP_001820983.2| nonsense-mediated mRNA decay protein Upf3 [Aspergillus oryzae
RIB40]
Length = 575
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +WF ++PGK S K R SRAYV +
Sbjct: 44 RLKLLVRRLPPGLTQAEFEVAVGPEWKLGAGKIDWFQYKPGKVSKDPAKPSRPSRAYVHV 103
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFK 114
+ + + F + + I VEYAP +VP RKD+R+GTI +
Sbjct: 104 VSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQ 163
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
DPD++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 164 DPDFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 211
>gi|350408566|ref|XP_003488445.1| PREDICTED: hypothetical protein LOC100743974 isoform 1 [Bombus
impatiens]
gi|350408569|ref|XP_003488446.1| PREDICTED: hypothetical protein LOC100743974 isoform 2 [Bombus
impatiens]
Length = 620
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 19/169 (11%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR---DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
TKVVIR LPP+++Q L +H ++ F S +SRAY+ +
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPEH-----DYLYFVKADMSLGQYAFSRAYINFVEQQ 94
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYLEFL 122
+F F E + +VFV+ KG ++ A+VE+AP QR+PK +KD + GTI D Y+ FL
Sbjct: 95 DIFMFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCGTIESDSYYISFL 154
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
+ + AE + + + E S P + + TPL+EYV+Q++
Sbjct: 155 ESLKN-----QEAESNVSQPKTEYSYQPPDNTPKKVTTTPLLEYVKQRK 198
>gi|389644656|ref|XP_003719960.1| hypothetical protein MGG_03912 [Magnaporthe oryzae 70-15]
gi|351639729|gb|EHA47593.1| hypothetical protein MGG_03912 [Magnaporthe oryzae 70-15]
gi|440470677|gb|ELQ39739.1| hypothetical protein OOU_Y34scaffold00487g84 [Magnaporthe oryzae
Y34]
gi|440487905|gb|ELQ67669.1| hypothetical protein OOW_P131scaffold00303g13 [Magnaporthe oryzae
P131]
Length = 676
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 27/202 (13%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSR 55
K P++ K+VIR LPP +S+ ++L D + + WF F PGK+S K R SR
Sbjct: 35 KAPIEGQKIVIRRLPPGISEEEVLKYLEDEWQPNKGKVGWFSFMPGKTSNDPSKPSRPSR 94
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS------QRVPKPFSRKDSRE 109
AY+ L + V + + + + G + P+ +++P +R D+R+
Sbjct: 95 AYLHLLRTEYVMPLMDQVRSAQWEDANGTCSDPCLCGPPAMEMSIYKKIPTSKNRADARQ 154
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV----TPLMEYVRQ 165
GTI +DP+++ FL+ +A P + + E + G +E +V TPL++Y+R+
Sbjct: 155 GTIDQDPEFMAFLESLANPTGD--------KDPETDHVGQEEEQPIVKASSTPLIDYLRE 206
Query: 166 KRAAESGAQESLAVGRVGRRSR 187
K+A +S + +V R G+ SR
Sbjct: 207 KKANKS---KDTSVARSGKHSR 225
>gi|224119924|ref|XP_002331096.1| predicted protein [Populus trichocarpa]
gi|222872824|gb|EEF09955.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 89/154 (57%), Gaps = 25/154 (16%)
Query: 383 DDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQ--PTQLL 440
DD+ LHG +EKQE+RTRNKDRPDRVVWT RRS+ S A+ E LSSS TQ
Sbjct: 29 DDKVVGNDLHG--FPNEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSSAYLSTQSG 86
Query: 441 SDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---------GSHRHNGRRAATNITKD-DGC 490
DS +V G++K D + ++ ++ A SG GSH+H+GRR + +D DG
Sbjct: 87 FDSSQVNHGDVKAD-TLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADG- 144
Query: 491 INMIEGKSSKRRGAAGSG--------GNEKQVWI 516
+ +EGKS KR GA+G G G+E Q W
Sbjct: 145 -STVEGKSLKRGGASGYGSHEVQASLGSEVQFWF 177
>gi|332030560|gb|EGI70248.1| Regulator of nonsense transcripts 3A [Acromyrmex echinatior]
Length = 596
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 29/171 (16%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDR------YNWFCFRPGKSSYKHQRYSRAYVELK 61
TKVVIR LPPS++Q D F ++ +++ F S +SRAY+
Sbjct: 45 TKVVIRRLPPSMTQ--------DQFLEQVSPLPVHDYLYFVKADMSLGQFSFSRAYINFV 96
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYL 119
+ +F F E + +VF++ KG ++ A+VE+AP QR+PK +KD + GTI D Y+
Sbjct: 97 EQQDIFMFREKFDNYVFLDSKGVEYPAVVEFAPFQRLPKKRMGKKKDVKCGTIESDSYYI 156
Query: 120 EFLKVIAKPAENLPSAEIQ--LERKEAELSGAPKETLV----VTPLMEYVR 164
FL ENL + EI + + + E S P + V TPL+EY++
Sbjct: 157 SFL-------ENLKNQEIDSSVAQSKTEYSYQPPDNTVKKITTTPLLEYLK 200
>gi|302682602|ref|XP_003030982.1| hypothetical protein SCHCODRAFT_109867 [Schizophyllum commune H4-8]
gi|300104674|gb|EFI96079.1| hypothetical protein SCHCODRAFT_109867, partial [Schizophyllum
commune H4-8]
Length = 502
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 8/161 (4%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSYKHQRY---SRAYVELKKPA 64
K+V+R LPP+L ++ + ++ +W + PGK + + SRAY+ K
Sbjct: 102 KIVVRRLPPNLPESIFWESVQAWVSEETVSWRTYWPGKMRSRPDKENVPSRAYIVFKTDE 161
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
V F + +GH+F ++ G +F+A+VE+AP Q+VP + D R GTI KD DY+ FL+
Sbjct: 162 QVAIFGKEYDGHLFRDKAGNEFQAVVEFAPYQKVPSEKKKVDVRAGTIEKDEDYISFLES 221
Query: 125 IAKPAENLPSAEIQLERKEAELSGA-PKETLVVTPLMEYVR 164
+ P + P + +E A ++ P TPL+EY++
Sbjct: 222 LNAPTSSEP---VTMESLRAHIAATRPPSPPKTTPLLEYLK 259
>gi|195382487|ref|XP_002049961.1| GJ21877 [Drosophila virilis]
gi|194144758|gb|EDW61154.1| GJ21877 [Drosophila virilis]
Length = 484
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 126/253 (49%), Gaps = 59/253 (23%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF--NDRYNWFCFRPGKSSYKHQRYSRAYVE--LK 61
Q K+V+RHLPP++++ + L D ND Y ++C P S + RAY++ LK
Sbjct: 18 QSIKIVVRHLPPTMTEKEFLEQV-DPLPENDSY-YYC--PADWSLGQEATCRAYIDMSLK 73
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLE 120
A V +F + +G+VFV+ KGA++ AIVEYAP Q K +R D++ TI K+P + E
Sbjct: 74 DIAEVLQFRDRFDGYVFVDSKGAEYVAIVEYAPFQCFLKNKARSHDNKVNTIEKEPHFQE 133
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV---RQKR 167
FL+ +A+ ER+EA G K E + TPL++Y+ ++KR
Sbjct: 134 FLQKLAE------------EREEATRLGDIKIDFTFENRGDEKVKSTPLLQYLANKKEKR 181
Query: 168 AAESGAQ--------------------ESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK 207
E+ + E++ V G ++ K+ ++ K+G K+
Sbjct: 182 REEARKRNEEKRKHREEQKLLRSTEQPENIKVKDSGNENK-----KSLNSNAKKGFNKEG 236
Query: 208 YILKDSAKNARRK 220
+ +D+AKNAR K
Sbjct: 237 QLPEDTAKNARSK 249
>gi|302907552|ref|XP_003049671.1| hypothetical protein NECHADRAFT_89796 [Nectria haematococca mpVI
77-13-4]
gi|256730607|gb|EEU43958.1| hypothetical protein NECHADRAFT_89796 [Nectria haematococca mpVI
77-13-4]
Length = 641
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 20/180 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+VIR LPP ++Q++ + + + + R +WF F PGK S K R RAYV + +
Sbjct: 52 KLVIRRLPPGMTQDEFVTILGNAWELGKGRVDWFSFAPGKISTDPSKPSRPGRAYVHVMR 111
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFK-------AIVEYAPSQRVPKPFSRKDSREGTIFKD 115
+ + + V+ + K A F VE+A ++VP R D+R+GTI +D
Sbjct: 112 KDDIMALNDTVRTAVWEDAK-ATFTNPSLIGPPSVEFAIYKKVPGNKKRTDARQGTIDQD 170
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA--AESGA 173
P+++ FL+ +A PA P E E +E + G + + TPL+EY+++K+A A+ GA
Sbjct: 171 PEFMAFLEDLANPA---PPKE-NAEGEEGDDIGKAETKVTTTPLIEYLKEKKANKAKDGA 226
>gi|312383539|gb|EFR28591.1| hypothetical protein AND_03300 [Anopheles darlingi]
Length = 685
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFN-----DRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
T+VV+RHLPP++++ FR+ + ++ F F S SRAY++
Sbjct: 73 TRVVVRHLPPTMTEEQ----FREEISVEGAFPKHEEFYFVGPDWSLGMSTTSRAYIKFTN 128
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLE 120
P V F +G+ F++ KGA+F A+VEYAP Q++PK SR D + TI DP ++
Sbjct: 129 PDDVLLFTHRFDGYTFLDSKGAEFLALVEYAPFQKLPKNRSRSKPDPKCNTIESDPLFIA 188
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSG--APKETLVVTPLMEYVRQKR 167
F K A E Q R E S P+E +V+TPL+E+V Q++
Sbjct: 189 F-----KEALEEEEREAQQGRGTQEFSFNLEPEEKIVMTPLLEFVAQRK 232
>gi|157137885|ref|XP_001664060.1| hypothetical protein AaeL_AAEL003735 [Aedes aegypti]
gi|108880729|gb|EAT44954.1| AAEL003735-PA, partial [Aedes aegypti]
Length = 514
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 4 PLQRTKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
P TKVVIR LPPS+ + + DH + F F G S SRAY+
Sbjct: 80 PRPLTKVVIRRLPPSMDEETFRKQIEPMPDH-----DDFYFVSGDWSLGKNASSRAYINF 134
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYL 119
K ++ F + +G++FV+ KG ++ A+VE+AP Q +P+ SR KD + GTI D +L
Sbjct: 135 TKAEDIYLFKDKFDGYIFVDAKGVEYPAVVEFAPFQELPRNRSRKKDIKCGTIETDTHFL 194
Query: 120 EFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
F + + AE +A + E +E + TPL+EY+ QK+
Sbjct: 195 AFKEALE--AEEKDTAGKSKSKLEYTYKIKDEEKITSTPLLEYIAQKK 240
>gi|255930133|ref|XP_002556626.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581239|emb|CAP79003.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 554
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 96/181 (53%), Gaps = 17/181 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSR 55
K P R K++IR LPP L+Q++L + D + +W ++PGK S K R SR
Sbjct: 32 KPPAPRLKLLIRRLPPGLTQSELESALGDQWKAGAGNVDWLQYKPGKVSKDPNKPSRPSR 91
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AY+ + V ++ + F + + I+ E+AP + P SRKD+R+
Sbjct: 92 AYIHVVSTECVSSLSDAVRRASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDARQ 151
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
GTI +D D++ FL+ + +P + + + ++ + KET++ TPL+++++ K+A+
Sbjct: 152 GTIDQDSDFIAFLESLTQPITKPAAVDSAADGEDKK-----KETIMTTPLVQFIKDKKAS 206
Query: 170 E 170
+
Sbjct: 207 K 207
>gi|408391884|gb|EKJ71250.1| hypothetical protein FPSE_08489 [Fusarium pseudograminearum CS3096]
Length = 670
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 18/173 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+ IR LPP +++ + ++ + + +WFCF GK S K R RAYV + +
Sbjct: 77 KLTIRRLPPGMTEAEFASILGSEWEVGKGKVDWFCFAEGKISTDPSKPSRPGRAYVHVMR 136
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSREGTIFKD 115
+ +E + V+ + K A F + +++ A ++VP R D+R+GTI +D
Sbjct: 137 KDDILPLSEAVRNAVWEDAK-ASFNSPSLIGPPVLDIAIYKKVPSAKKRTDARQGTIDQD 195
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
PD++ FL+ +A P P E E +E + G + + TPL+EY+++K+A
Sbjct: 196 PDFMAFLEELANP---TPPKEPD-EGEEGDDLGKSENKVTTTPLIEYLKEKKA 244
>gi|410914359|ref|XP_003970655.1| PREDICTED: regulator of nonsense transcripts 3B-like [Takifugu
rubripes]
Length = 452
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 10/163 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPPSL++ +L + Y F F S + H ++RAY+ + +
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPLPEVDYLEF-FSNDTSLFPHL-FARAYINFRNQEDIV 93
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++++G ++ A+VE+AP Q+ K ++K D++ GTI +DP+Y +FL+
Sbjct: 94 LFRDRFDGYVFIDKRGQEYPAVVEFAPFQKTAKKRNKKRDAKCGTIIEDPEYKKFLEYYN 153
Query: 127 KPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
E L S+ EI LE EL KE + TPL+++++ K
Sbjct: 154 GDEEKLTSSPEILLE----ELEAKSKELVAKKSTPLLDFLKNK 192
>gi|320461533|ref|NP_001189377.1| regulator of nonsense transcripts 3A [Danio rerio]
Length = 478
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSLS++ L ++H + +++F F P S +SRAY+ K P
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPED 98
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ A+VE+AP Q+V K +K + GTI +DP+Y FL+
Sbjct: 99 IIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLEN 158
Query: 125 IAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
+ E ++ + E L E+ +E + TPL+EY++ K+
Sbjct: 159 YSCDEEKSMANPETLL----GEIEAKTRELIAKRTTPLLEYIKNKK 200
>gi|195489365|ref|XP_002092707.1| GE11515 [Drosophila yakuba]
gi|194178808|gb|EDW92419.1| GE11515 [Drosophila yakuba]
Length = 492
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 37/180 (20%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
Q K+V+RHLPP++++ D L D ND Y ++C S H+ RAY+++
Sbjct: 28 QIVKIVMRHLPPTMTEADFL----DQVGPLPENDSY-YYC--KADWSLGHEATCRAYIDM 80
Query: 61 --KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI +P
Sbjct: 81 SSKDITEVLQFRDRFDGYVFVDNKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPH 140
Query: 118 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYVRQKR 167
Y EF+K +A+ ER+EA G K E + TPL++Y+ K+
Sbjct: 141 YQEFIKRLAE------------EREEASRMGDVKIDFNFDRRTDEKVKSTPLLQYLANKK 188
>gi|307207790|gb|EFN85408.1| Regulator of nonsense transcripts 3A [Harpegnathos saltator]
Length = 694
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 23/171 (13%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR---DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
TKVVIR LPP+++Q L +H ++F F S +SRAY+
Sbjct: 45 TKVVIRRLPPTMTQEQFLEQISPLPEH-----DYFYFVKADMSLGQFAFSRAYINFTDQQ 99
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEFL 122
+F F E + +VF++ KG ++ A+VE+AP QR+ + +KD + GTI D Y+ FL
Sbjct: 100 DIFVFREKFDNYVFIDAKGVEYPAVVEFAPFQRLARKRHGRKKDLKCGTIESDSYYISFL 159
Query: 123 KVIAKPAENLPSAEI--QLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
E+L + EI + + + E S P + + TPL+EY++Q++
Sbjct: 160 -------ESLKNQEIDSNVAQSKTEYSYQPPDNTTKKVTTTPLLEYLKQRK 203
>gi|358370682|dbj|GAA87292.1| nonsense-mediated mRNA decay protein Upf3 [Aspergillus kawachii IFO
4308]
Length = 584
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +WF ++PGK S K R SRAY+ +
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWRVGGGKVDWFQYKPGKVSKDPAKPSRPSRAYIHV 98
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
+ + F++ + ++ E+AP ++ SRKD+R+GTI +
Sbjct: 99 MSSDHTIPLSNKVRQTSFIDARNTSNDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTIDQ 158
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
DP+++ FL+ + +P P + + ++ KET+ VTPL++Y+R+K+A
Sbjct: 159 DPEFIAFLESLTQPLAKPPPVDSGADGEDK------KETVTVTPLVQYIREKKA 206
>gi|154310975|ref|XP_001554818.1| hypothetical protein BC1G_06466 [Botryotinia fuckeliana B05.10]
gi|347832513|emb|CCD48210.1| hypothetical protein [Botryotinia fuckeliana]
Length = 624
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
+ K+++R L P L++ + + D + + +WF ++PGK S K R SRAY+ L
Sbjct: 38 KMKLIVRRLAPGLTEAEFCSSLGDEWKVGQGKVDWFQYKPGKDSKDPSKPSRPSRAYLHL 97
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRK-DSREGTIF 113
+ F++++ F + K + VE+AP RVP R+ D+R GTI
Sbjct: 98 TNSDHLLPFSDVVRKSSFEDAKNTYTNSCLIGPPTVEFAPYSRVPAGLKRRTDARAGTID 157
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+DP+++ FL+ +A P + + E+ E ++A A E + +TPL+++++ K+A
Sbjct: 158 QDPEFMAFLEGLANP---VTTKEVGAEGEDAPTGKA--EKVTITPLVQFLKDKKA 207
>gi|46109162|ref|XP_381639.1| hypothetical protein FG01463.1 [Gibberella zeae PH-1]
Length = 641
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 18/173 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+ IR LPP +++ + ++ + + +WFCF GK S K R RAYV + +
Sbjct: 50 KLTIRRLPPGMTEAEFASILGSEWEVGKGKVDWFCFAEGKISTDPSKPSRPGRAYVHVMR 109
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAI-------VEYAPSQRVPKPFSRKDSREGTIFKD 115
+ +E + V+ + K A F + ++ A ++VP R D+R+GTI +D
Sbjct: 110 KDDILPLSEAVRNAVWEDAK-ASFNSPSLIGPPGLDIAIYKKVPSAKKRTDARQGTIDQD 168
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
PD++ FL+ +A P P E +E +E + G + + TPL+EY+++K+A
Sbjct: 169 PDFMAFLEELANP---TPPKET-VEGEEGDDFGKSENKVTTTPLIEYLKEKKA 217
>gi|291239911|ref|XP_002739866.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B-like
[Saccoglossus kowalevskii]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKV+IR LPPS ++ + N+F F S +SR Y+ + K +
Sbjct: 31 TKVIIRRLPPSFTEETFKEAL--EYLPHNNYFHFVKADRSLGPNAFSRVYINIVKQEDII 88
Query: 68 EFAE------LLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLE 120
F + L ++ + G +F A+VE AP Q++PK +K D + G+I DPDY++
Sbjct: 89 AFRDNHSLDKLTMTYIPL---GEEFPAVVELAPYQKIPKKALKKPDVKSGSIEDDPDYVK 145
Query: 121 FLKVIAKPAENLPSAEIQLERKEA-----ELSGAPKETLVVTPLMEYVR 164
FL+ + E LPSAE LE EA E +G K+T TPL+EY+R
Sbjct: 146 FLESLNAEVEPLPSAESYLEEIEAKERELEAAGPQKKT---TPLIEYIR 191
>gi|229891778|sp|B0S733.2|REN3A_DANRE RecName: Full=Regulator of nonsense transcripts 3A; AltName:
Full=Up-frameshift suppressor 3 homolog A
Length = 452
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSLS++ L ++H + +++F F P S +SRAY+ K P
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPED 98
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ A+VE+AP Q+V K +K + GTI +DP+Y FL+
Sbjct: 99 IIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLEN 158
Query: 125 IAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
+ E ++ + E L E+ +E + TPL+EY++ K+
Sbjct: 159 YSCDEEKSMANPETLL----GEIEAKTRELIAKRTTPLLEYIKNKK 200
>gi|410896456|ref|XP_003961715.1| PREDICTED: regulator of nonsense transcripts 3A-like [Takifugu
rubripes]
Length = 458
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 95/166 (57%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
TKVV+R LPP+LS++ L +H + +++F F P S +SRAY+ K P
Sbjct: 46 TKVVLRRLPPNLSKDQL----EEHLSPLPPFDYFEFFPADQSLYPHLFSRAYINFKNPED 101
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y FL+
Sbjct: 102 ILLFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLEN 161
Query: 125 IAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
I+ E ++ + E L E+ +E + TPL+EY++ K+
Sbjct: 162 ISCDEEKSMANPETLL----GEIEAKTRELIARRTTPLLEYIKNKK 203
>gi|392578399|gb|EIW71527.1| hypothetical protein TREMEDRAFT_60453 [Tremella mesenterica DSM
1558]
Length = 423
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSY--KHQRYSRAYVELK 61
P RTK+VIR LPP+L + ++ W + GK++ + RYSRAY L
Sbjct: 10 PPHRTKLVIRRLPPTLPEEIFWTSVSQWVDESCVWRRYVKGKAADGGERARYSRAYCLLP 69
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
V F NGHV+ ++ G +++A+VE AP Q+ P + D R+GT+ DPDY+ F
Sbjct: 70 DEQAVI-FRTDFNGHVYRSKAGEEYQALVEPAPLQKTPNKLKKIDVRQGTVETDPDYISF 128
Query: 122 LKVIAKPAENLP 133
+ ++ E P
Sbjct: 129 INALSGSPEPPP 140
>gi|47220145|emb|CAG07286.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 14/165 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
+VV+R LPPSL+++ L +H + +++F F P S +SRAY+ K P +
Sbjct: 3 QVVLRRLPPSLTKDQL----EEHLSPLPPFDYFEFFPADQSLYPHLFSRAYINFKNPDDI 58
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVI 125
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y FL+ I
Sbjct: 59 LLFRDRFDGYVFIDSKGQEYAAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENI 118
Query: 126 AKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
+ E +L + EI L E+ +E + TPL+EY++ K+
Sbjct: 119 SCDEEKSLANPEILL----GEIEAKTRELIARRTTPLLEYIKNKK 159
>gi|167535258|ref|XP_001749303.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772169|gb|EDQ85824.1| predicted protein [Monosiga brevicollis MX1]
Length = 402
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQN---DLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYV 58
K P + ++VIR LPP L + LLA ++ F++ F F G + + ++RAYV
Sbjct: 13 KAPKENLRLVIRRLPPKLPEEIMMRLLAPYQQFFSN----FYFVVGDPTLEKNCFARAYV 68
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDY 118
+ + FA +GH+F + G++ +A VE AP VP P D +GTI DPDY
Sbjct: 69 KFNNRDAMLHFARGFDGHLFKGQDGSEHRARVECAPFADVP-PKKAPDPLQGTIEDDPDY 127
Query: 119 LEFLKVIAKPAENLPSAEIQLERKEAELS-------GAPKETLVVTPLMEYVRQKRA 168
FL+ E LPSAE L+ EA+L+ P + V L E + KRA
Sbjct: 128 KRFLEERDAKPEALPSAEEWLKEHEAQLAELADPADATPLQAFVGLKLEEKAKAKRA 184
>gi|240277371|gb|EER40879.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H143]
Length = 452
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 30/251 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK---SSYKHQRYSRAYVELKK 62
KV+IR LPP L+ + +A+ D + N + +WF F+ GK K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKIDWFRFKEGKVFKDPAKPSRPTRAYLRVTS 98
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKDP 116
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTGRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 176
D++ FL+ + P + + KE E +TPL++++++KRA + +E+
Sbjct: 159 DFITFLESLTNPVTKSVADIAADDTKE--------EKPTITPLIQFLKEKRANK--GKET 208
Query: 177 LAVGRVGRRSRAASASKTSSTT-TKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQP 235
+ R R S A A S+ +KR S K ++K A K AK QP
Sbjct: 209 SSPARPSRHSEADGAPVHSNEDGSKRTSTK-------ASKEAESTRKPALAKQAKGALQP 261
Query: 236 ASSSGKETSAS 246
++ +G+ TS S
Sbjct: 262 SAVTGRNTSKS 272
>gi|224136045|ref|XP_002327367.1| predicted protein [Populus trichocarpa]
gi|222835737|gb|EEE74172.1| predicted protein [Populus trichocarpa]
Length = 123
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 14/106 (13%)
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQ---------LERKEA--ELSGAPKET--LVVTPLME 161
DPDYLEFLK+IAKPA NLP AEIQ L +K ELS A KET + TPLME
Sbjct: 9 DPDYLEFLKLIAKPARNLPCAEIQDAEESGQIYLLKKFVLKELSEATKETPISISTPLME 68
Query: 162 YVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK 207
+VRQKRA + G + S AV + G+R+ +AS + + S++TKRGS KK
Sbjct: 69 FVRQKRADKGGNKGS-AVVKGGKRAGSASPTNSGSSSTKRGSATKK 113
>gi|301781170|ref|XP_002926002.1| PREDICTED: regulator of nonsense transcripts 3A-like [Ailuropoda
melanoleuca]
Length = 495
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L R +++F F SS YSRAY+ + P +
Sbjct: 79 SKVVIRRLPPSLTKEQLEEQLRPL--PAHDYFEFFTADSSLYPHLYSRAYINFRNPDDIL 136
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q K RKD++ G+I DP+Y +FL+
Sbjct: 137 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKRKDAQTGSIEDDPEYKKFLETYC 196
Query: 127 ----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
KP N + +E K EL TPL+EY+R ++
Sbjct: 197 VEEEKPNANPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 236
>gi|242007240|ref|XP_002424450.1| Regulator of nonsense transcripts 3A, putative [Pediculus humanus
corporis]
gi|212507850|gb|EEB11712.1| Regulator of nonsense transcripts 3A, putative [Pediculus humanus
corporis]
Length = 720
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 25/170 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
KVVIR LPP L++ F + F+ +++F F G + +SRAY+ +
Sbjct: 52 KVVIRRLPPKLTK----EAFCEEFSPLPPHDYFHFVRGDLNLGSHAFSRAYINFINQKDI 107
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP--KPFSRKDSREGTIFKDPDYLEFL-- 122
F F E + + ++KG + A+VE+AP Q++P K +K S+ GT+ DP Y+EFL
Sbjct: 108 FSFKEKYDDYDIQDDKGRTYHAVVEFAPFQKIPKRKVLKKKSSKAGTLESDPKYVEFLHK 167
Query: 123 -----KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
I P+E E + A K ++ TPL+E++++KR
Sbjct: 168 LEESKNFINNPSEYFHETE----------NPALKAKVITTPLLEFLKKKR 207
>gi|425775443|gb|EKV13712.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum PHI26]
gi|425783735|gb|EKV21562.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum Pd1]
Length = 551
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSR 55
K P R K++IR LPP L++ +L D + +W F+PGK S K R SR
Sbjct: 32 KPPAPRLKLLIRRLPPGLTRAELENSLGDQWKAGAGNVDWLQFKPGKVSKDPNKSSRPSR 91
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AYV + V ++ + F + + I+ E+AP + P SRKD+R+
Sbjct: 92 AYVHVVSTECVSSLSDAVRQASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDARQ 151
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
GTI +D +++ FL+ + +P + + A+ KET+V TPL+++++ K+A+
Sbjct: 152 GTIDQDSEFIAFLESLTQPITRPAAVD-----STADCEDKKKETIVTTPLVQFIKDKKAS 206
Query: 170 E 170
+
Sbjct: 207 K 207
>gi|348528186|ref|XP_003451599.1| PREDICTED: regulator of nonsense transcripts 3A-like [Oreochromis
niloticus]
Length = 464
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP+LS+ L + Y++F F P S +SRAY+ K P +
Sbjct: 46 TKVVIRRLPPNLSKEQLEEQLSPLPS--YDYFEFFPADQSLYPHLFSRAYINFKNPEDIL 103
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y FL+ +
Sbjct: 104 LFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYS 163
Query: 127 KPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E ++ + E L E+ KE + TPL+EY++ K+
Sbjct: 164 CDEEKSMANPETLL----GEIEAKTKELIAKRTTPLLEYIKNKK 203
>gi|194754295|ref|XP_001959431.1| GF12056 [Drosophila ananassae]
gi|190620729|gb|EDV36253.1| GF12056 [Drosophila ananassae]
Length = 503
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 27/175 (15%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVE--LKKP 63
Q K+V+RHLPP++++++ L + Y +FC P S + RAY++ LK
Sbjct: 32 QIIKIVVRHLPPTMTESEFLEQVGPLPENDYYYFC--PADWSLGQEATCRAYIDMSLKDI 89
Query: 64 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFL 122
+ V +F + +G+VFV+ KG+++ AIVEYAP Q K +R D++ TI + Y EF+
Sbjct: 90 SDVLQFRDRFDGYVFVDNKGSEYMAIVEYAPFQSFLKNKARNDDAKVNTIESESHYQEFI 149
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYVRQKR 167
+ +A ER+EA G K E TPL++Y+ K+
Sbjct: 150 QRLAD------------EREEASRLGDVKIDFNFERRLDENCKSTPLLQYLANKK 192
>gi|322790928|gb|EFZ15594.1| hypothetical protein SINV_80357 [Solenopsis invicta]
Length = 319
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 23/166 (13%)
Query: 10 VVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
VVIR LPP+++Q+ L + +H ++ F S +SRAY+ + +
Sbjct: 1 VVIRRLPPTMTQDQFLEQVSPLPEH-----DYMYFVKADMSLGQFAFSRAYINFMEQQDI 55
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEFLKV 124
F F E + +VFV+ KG ++ A+VE+AP QR+PK + +KD + GTI D Y+ FL
Sbjct: 56 FMFREKFDNYVFVDSKGVEYPAVVEFAPFQRLPKKRAGKKKDLKCGTIESDSYYISFL-- 113
Query: 125 IAKPAENLPSAEIQ--LERKEAELSGAPKET----LVVTPLMEYVR 164
ENL + EI + + + E S P + ++ TPL+EY++
Sbjct: 114 -----ENLKNQEIDSSVAQSKTEYSYQPPDNTVKKIMTTPLLEYLK 154
>gi|303318159|ref|XP_003069079.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108765|gb|EER26934.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 600
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +WF ++PGK S K + SRAY+ +
Sbjct: 42 RLKLLVRRLPPGLTQAEFETALGPAWTVGKGKLDWFAYKPGKLSADPSKPSKPSRAYLRV 101
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTIF 113
A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 102 TASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTID 160
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 173
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A S A
Sbjct: 161 QDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKA--SKA 210
Query: 174 QESLAVGRVGRRSRA 188
+E+ A R + SR+
Sbjct: 211 KEASAPARATKPSRS 225
>gi|317026432|ref|XP_001389592.2| nonsense-mediated mRNA decay protein Upf3 [Aspergillus niger CBS
513.88]
Length = 582
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +WF ++PGK S K R SRAY+ +
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDPAKPSRPSRAYIHV 98
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
+ + F++ + ++ E+AP ++ SRKD+R+GTI +
Sbjct: 99 MSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTIDQ 158
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
DP+++ FL+ + +P E + ++ KET+ VTPL++Y+R+K+A
Sbjct: 159 DPEFIAFLESLTQPLAKPAPVESGADGEDK------KETVTVTPLVQYIREKKA 206
>gi|47226207|emb|CAG08354.1| unnamed protein product [Tetraodon nigroviridis]
Length = 503
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 12/164 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPPSL++ +L + Y F F S + H ++RAY+ + +
Sbjct: 37 TKIVIRRLPPSLTKEELKEQLQPLPEVDYLEF-FSNDTSLFPHL-FARAYINFQNQEDIV 94
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++++G ++ A+VE+AP Q+ K S+K D++ GTI +DP+Y +FL+
Sbjct: 95 LFRDRFDGYVFIDKRGQEYPAVVEFAPFQKTAKKRSKKRDAKCGTINEDPEYKKFLEFYN 154
Query: 127 KPAENLPSA-EIQLERKEA---ELSGAPKETLVVTPLMEYVRQK 166
E S+ EI LE EA EL GA K TPL+++++ K
Sbjct: 155 GDEEKFTSSPEILLEELEAKSKEL-GAKK----STPLLDFLKNK 193
>gi|392864553|gb|EAS27556.2| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 629
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +WF ++PGK S K + SRAY+ +
Sbjct: 71 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWFAYKPGKLSADPSKPSKPSRAYLRV 130
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTIF 113
A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 131 TASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTID 189
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 173
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A + A
Sbjct: 190 QDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKAGK--A 239
Query: 174 QESLAVGRVGRRSRA 188
+E+ A R + SR+
Sbjct: 240 KEASAPARATKPSRS 254
>gi|119176142|ref|XP_001240195.1| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 600
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +WF ++PGK S K + SRAY+ +
Sbjct: 42 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWFAYKPGKLSADPSKPSKPSRAYLRV 101
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTIF 113
A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 102 TASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTID 160
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 173
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A + A
Sbjct: 161 QDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKAGK--A 210
Query: 174 QESLAVGRVGRRSRAAS 190
+E+ A R + SR+ +
Sbjct: 211 KEASAPARATKPSRSGA 227
>gi|322710626|gb|EFZ02200.1| nonsense-mediated mRNA decay protein Upf3, putative [Metarhizium
anisopliae ARSEF 23]
Length = 664
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+VIR LPP ++ + +++ + + +WF + PGK S K R RAYV L +
Sbjct: 89 KLVIRRLPPGMTMEEFISILGPEWEMSKGKVDWFSYVPGKISIDPSKPSRPGRAYVHLVR 148
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFK-------AIVEYAPSQRVPKPFSRKDSREGTIFKD 115
+ +E++ + + K + F ++E++ ++VP R D+R+GTI +D
Sbjct: 149 KDDIMPLSEVVRNATWEDAK-STFTNPSLIGPPVLEFSIYKKVPGTKKRTDTRQGTIDQD 207
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA------- 168
P+++ FL+ +A PA S +++ +A+ S + + TPL+E++++K+A
Sbjct: 208 PEFMAFLEGLANPAPMRESIDVE----DADESAKVEVKVTTTPLVEFLKEKKANRGKDGS 263
Query: 169 --------AESGAQESLAVGR-VGRRSRAASASKT 194
+SGA++ + GR G+ SR KT
Sbjct: 264 GKNSKSGKGKSGAKDDDSFGRKKGKESRTEKQDKT 298
>gi|74959788|ref|NP_080849.1| regulator of nonsense transcripts 3B [Mus musculus]
gi|74211353|dbj|BAE26432.1| unnamed protein product [Mus musculus]
Length = 472
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +FL+
Sbjct: 107 ILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|119472065|ref|XP_001258263.1| nonsense-mediated mRNA decay protein Upf3, putative [Neosartorya
fischeri NRRL 181]
gi|119406415|gb|EAW16366.1| nonsense-mediated mRNA decay protein Upf3, putative [Neosartorya
fischeri NRRL 181]
Length = 579
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P R K+++R LPP L+Q++ + + +W+ ++PGK S K R SR
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENALGSEWMVGAGKVDWYQYKPGKVSKDYAKPSRPSR 93
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AY+ + + ++ + F++ + ++ E+AP ++P RKD+R+
Sbjct: 94 AYIHVTSSEHIAPLSDKIRQTSFLDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDARQ 153
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
GTI +DP+++ FL+ + +P + E + +E KET+ TPL++Y+
Sbjct: 154 GTIDQDPEFIAFLESLTQPITKPTTVETPTDAEEK------KETVTTTPLVQYI 201
>gi|209529640|ref|NP_001129345.1| regulator of nonsense transcripts 3B [Rattus norvegicus]
Length = 472
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +FL+
Sbjct: 107 ILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|114051045|ref|NP_001040320.1| Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori]
gi|87248437|gb|ABD36271.1| Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori]
Length = 499
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
TK+++R LPP++++ ++ +H ++F F ++ + +SRAY+
Sbjct: 35 TKIILRRLPPTMTEETFWEQVSPIPEH-----DYFYFAKPDPTWGNNLFSRAYINFVNVE 89
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+F F + +G+VF++EKG ++ IVEYAP QR+ K +KD + GT+ DP Y EF++
Sbjct: 90 DIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQRISKKKKKKDPKCGTLESDPIYQEFIES 149
Query: 125 IAK--PAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
+ K E+ P E ++ ++ TPL+EY+
Sbjct: 150 LNKDPEVESQPKLEYSY-----PINDVSEKKTQSTPLLEYL 185
>gi|148697043|gb|EDL28990.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Mus musculus]
Length = 485
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +FL+
Sbjct: 107 ILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|149060022|gb|EDM10838.1| UPF3 regulator of nonsense transcripts homolog B (yeast)
(predicted) [Rattus norvegicus]
Length = 485
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +FL+
Sbjct: 107 ILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|389746289|gb|EIM87469.1| hypothetical protein STEHIDRAFT_146836 [Stereum hirsutum FP-91666
SS1]
Length = 505
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSYKHQR---YSRAYVELK 61
+R K ++R LP +L + + ND W F PGK K + SRAY+ K
Sbjct: 24 ERLKTIVRRLPANLPEEIFWQSVHNWVNDDTVIWKVFYPGKLRKKVNKENILSRAYIAFK 83
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYL 119
+ F+ +GH+F ++ G + +A+VE+AP Q++P P +K DSR GTI KD D++
Sbjct: 84 SEELLAAFSRDYDGHIFRDKAGNESRAVVEFAPYQKIP-PLEKKKMDSRNGTIEKDEDFI 142
Query: 120 EFLKVI----AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 170
F++++ KP +N E LE A S P+ TPL+E ++ +++A+
Sbjct: 143 SFMQLLDTSSTKPHDN----ESLLETLIA--STQPQPQPKSTPLLEALKAEKSAQ 191
>gi|66267353|gb|AAH95761.1| Upf3a protein [Danio rerio]
Length = 201
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSLS++ L ++H + +++F F P S +SRAY+ K P
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPED 98
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ A+VE+AP Q+V K +K + GTI +DP+Y FL+
Sbjct: 99 IIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLEN 158
Query: 125 IAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
+ E ++ + E L E+ +E + TPL+EY+++K+
Sbjct: 159 YSCDEEKSMANPETLL----GEIEAKTRELIAKRTTPLLEYIKKKK 200
>gi|431913181|gb|ELK14863.1| Regulator of nonsense transcripts 3A [Pteropus alecto]
Length = 485
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPK-PFSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +KD++ G+I D +Y FL+ +
Sbjct: 126 LFRDRFDGYIFIDNKGLEYPAVVEFAPFQKIAKRRLKKKDAKTGSIEGDLEYKRFLEAYS 185
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + L ++ +E TPL+EY++ ++
Sbjct: 186 VEEEKTSTNPETL---LGDIEAKTREHFARRTTPLLEYIKNRK 225
>gi|237830905|ref|XP_002364750.1| smg-4/UPF3 family domain protein [Toxoplasma gondii ME49]
gi|211962414|gb|EEA97609.1| smg-4/UPF3 family domain protein [Toxoplasma gondii ME49]
Length = 595
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKS--SYKHQRYSRAYVELKKPA 64
+TKVV+R LPPS + DLL L + +W F PG+ S R S YV
Sbjct: 284 KTKVVVRLLPPSAREEDLLELVAAPLQGKMSWTRFVPGRQQKSDVPSRNSTWYVNFSTEE 343
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+F + +G VFV+E+ FKA+ AP Q+VP+ + D REG++ KDP Y+ FL+
Sbjct: 344 DADDFIKSFHGKVFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGSLAKDPLYVNFLQA 402
Query: 125 I 125
+
Sbjct: 403 L 403
>gi|221507633|gb|EEE33237.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 588
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKS--SYKHQRYSRAYVELKKPA 64
+TKVV+R LPPS + DLL L + +W F PG+ S R S YV
Sbjct: 284 KTKVVVRLLPPSAREEDLLELVAAPLQGKMSWTRFVPGRQQKSDVPSRNSTWYVNFSTEE 343
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+F + +G VFV+E+ FKA+ AP Q+VP+ + D REG++ KDP Y+ FL+
Sbjct: 344 DADDFIKSFHGKVFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGSLAKDPLYVNFLQA 402
Query: 125 I 125
+
Sbjct: 403 L 403
>gi|350638598|gb|EHA26954.1| hypothetical protein ASPNIDRAFT_205576 [Aspergillus niger ATCC
1015]
Length = 587
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 22/178 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK-------SSYKHQRYSRA 56
R K+++R LPP L+Q + + + +WF ++PGK S K R SRA
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDMLYSPAKPSRPSRA 98
Query: 57 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREG 110
Y+ + + + F++ + ++ E+AP ++ SRKD+R+G
Sbjct: 99 YIHVMSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQG 158
Query: 111 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
TI +DP+++ FL+ + +P E + ++ KET+ VTPL++Y+R+K+A
Sbjct: 159 TIDQDPEFIAFLESLTQPLAKPAPVESGADGEDK------KETVTVTPLVQYIREKKA 210
>gi|351698236|gb|EHB01155.1| Regulator of nonsense transcripts 3A [Heterocephalus glaber]
Length = 428
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPP L++ L R +++F S YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVAGADRSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQR-VPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q+ V + ++DS+ G I DP+Y +FL+ +
Sbjct: 124 LFRDRFDGYVFMSSKGLEYPAVVEFAPFQKIVRRKLKKRDSKTGGIEDDPEYKQFLETYS 183
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + EI L E+ +E + TPL++Y++ ++
Sbjct: 184 MEEERTSANPEILL----GEIEAKTRELVARRTTPLLDYIKNRK 223
>gi|168015195|ref|XP_001760136.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688516|gb|EDQ74892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 259
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 5/79 (6%)
Query: 105 KDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPL 159
KD EG I+KDPDYL F++ +AKPAE LP EIQLER+EAE ++G K+ +VVTPL
Sbjct: 7 KDVGEGIIYKDPDYLAFMQQLAKPAEYLPRVEIQLERREAEKAASIVAGTSKDVVVVTPL 66
Query: 160 MEYVRQKRAAESGAQESLA 178
+ VR RAA+ +Q S++
Sbjct: 67 TDLVRSLRAAKFTSQRSMS 85
>gi|159124599|gb|EDP49717.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
fumigatus A1163]
Length = 577
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P R K+++R LPP L+Q++ + + +W+ ++PGK S K R SR
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENAMGPEWMVGAGKVDWYQYKPGKVSKDYAKPSRPSR 93
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AY+ + + ++ + FV+ + ++ E+AP ++P RKD+R+
Sbjct: 94 AYIHVTSSEHIAPLSDKVRQTSFVDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDARQ 153
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
GTI +DP+++ FL+ + +P + + + +E KET+ TPL++Y+
Sbjct: 154 GTIDQDPEFIAFLESLTQPITKPTTVDTPTDAEEK------KETVTTTPLVQYI 201
>gi|345788839|ref|XP_849752.2| PREDICTED: regulator of nonsense transcripts 3A [Canis lupus
familiaris]
Length = 475
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L H +++F F P S YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFPADLSLYPHLYSRAYINFRNPEDIL 124
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 127 ----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
KP N + +E K EL TPL+EY+R ++
Sbjct: 185 VEEEKPNTNPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 224
>gi|70992361|ref|XP_751029.1| nonsense-mediated mRNA decay protein Upf3 [Aspergillus fumigatus
Af293]
gi|66848662|gb|EAL88991.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
fumigatus Af293]
Length = 581
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P R K+++R LPP L+Q++ + + +W+ ++PGK S K R SR
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENAMGPEWMVGAGKVDWYQYKPGKVSKDYAKPSRPSR 93
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AY+ + + ++ + FV+ + ++ E+AP ++P RKD+R+
Sbjct: 94 AYIHVTSSEHIAPLSDKVRQTSFVDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDARQ 153
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
GTI +DP+++ FL+ + +P + + + +E KET+ TPL++Y+
Sbjct: 154 GTIDQDPEFIAFLESLTQPITKPTTVDTPTDAEEK------KETVTTTPLVQYI 201
>gi|344283648|ref|XP_003413583.1| PREDICTED: regulator of nonsense transcripts 3A-like [Loxodonta
africana]
Length = 511
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 82 SKVVIRRLPPSLTKEQLDEQL--HPLPAHDYFEFCTANLSLYPHLYSRAYINFRNPDDIL 139
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DPDY +FL+V +
Sbjct: 140 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKTGSIEDDPDYKKFLEVYS 199
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L E+ +E + TPL+EY++ ++
Sbjct: 200 MEEEKTSANPETLL----GEIEAKTRELIARRTTPLLEYIKNRK 239
>gi|320162867|gb|EFW39766.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 465
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDH----FNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
K+VIR LPP L + A+FR+ F ++ PG+ S ++ Y+ LK P
Sbjct: 24 KLVIRRLPPLLDE----AVFREKHLAGFEASISYLYLVPGRLSLGPNAFATVYITLKTPE 79
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLEFL 122
+ + A+ +NGHVF + +G AI E AP QR P P R+ D + GT+ D DYL F+
Sbjct: 80 ALAQLAQQMNGHVFRDSRGTTHTAIAELAPFQRTPNPSRRRRPDPKMGTLSTDKDYLAFV 139
Query: 123 KVI 125
+ +
Sbjct: 140 EAL 142
>gi|281342416|gb|EFB18000.1| hypothetical protein PANDA_015590 [Ailuropoda melanoleuca]
Length = 375
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVIR LPPSL++ L R +++F F SS YSRAY+ + P +
Sbjct: 10 QVVIRRLPPSLTKEQLEEQLRPL--PAHDYFEFFTADSSLYPHLYSRAYINFRNPDDILL 67
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKVIA- 126
F + +G++F++ KG ++ A+VE+AP Q K RKD++ G+I DP+Y +FL+
Sbjct: 68 FRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKRKDAQTGSIEDDPEYKKFLETYCV 127
Query: 127 ---KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
KP N + +E K EL TPL+EY+R ++
Sbjct: 128 EEEKPNANPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 166
>gi|154270398|ref|XP_001536054.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409981|gb|EDN05369.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 542
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 22/191 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKS---SYKHQRYSRAYVELKK 62
KV+IR LPP L+ + +A+ D + N + +WF F+ GK K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKVDWFRFKEGKDFKDPAKPSRPTRAYLRVTS 98
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKDP 116
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTSRDPILIGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 176
D++ FL+ + P + + KE E +TPL++++++KRA + +E+
Sbjct: 159 DFITFLESLTNPVTKSVADIAADDTKE--------EKPAITPLIQFLKEKRANK--GKET 208
Query: 177 LAVGRVGRRSR 187
+ R R SR
Sbjct: 209 SSPARSSRHSR 219
>gi|302828730|ref|XP_002945932.1| hypothetical protein VOLCADRAFT_48819 [Volvox carteri f.
nagariensis]
gi|300268747|gb|EFJ52927.1| hypothetical protein VOLCADRAFT_48819 [Volvox carteri f.
nagariensis]
Length = 90
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR+LPP ++ + + RY W + PGK S K +SRAYV V+
Sbjct: 1 TKVVIRNLPPGMTDDTFKTVLESLAGGRYTWLSYFPGKVSLKRVVFSRAYVNFLTAEDVY 60
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQR 97
+F + +GHVF+ +KG Q++ VEYAP Q+
Sbjct: 61 DFKQRFDGHVFIGQKGHQYRCSVEYAPLQK 90
>gi|428172186|gb|EKX41097.1| hypothetical protein GUITHDRAFT_142255 [Guillardia theta CCMP2712]
Length = 350
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 56/297 (18%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
P + KV IR LPP++++ + L N +W P + K + AY+
Sbjct: 10 PRAKLKVWIRGLPPAMTEEEFKELLESITPPNNKSIDWQRLVP---ANKRVPTTTAYLHF 66
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
+F L+GH F++ KG +++A++EYAP Q++P+ D REGTI KD D++
Sbjct: 67 SNEEALFGLFSKLDGHKFIDAKGREYRALIEYAPYQKIPRK-KVIDKREGTIEKDADFIA 125
Query: 121 FL-KVIAKPAENLPSAEIQLERKEAE-----------LSGAPKETLVV-----TPLMEYV 163
F K+ ++ + SAE LER+E E LS + +VV TPL++Y+
Sbjct: 126 FQEKLESELNMKVESAEAWLERREQEAQAAKDRLKALLSAEGENGVVVHEVVHTPLLDYL 185
Query: 164 RQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKS 223
R+K+ R + + K ++ E+++ + S+ RR +
Sbjct: 186 REKKE----------------RDQRDRSKKRDEERRRKADEERQRRMGRSSDRKRRGEAI 229
Query: 224 TFTVVAKREDQPASSSGKETSASETICG-----VE--GSVGIP--LTSDTGKKKILL 271
V+ SGKE + +T C +E G+ +P LT GK+K LL
Sbjct: 230 KGKVL-------LLESGKEDKSRQTWCKGSLWRLESPGAARLPGNLTRPKGKEKQLL 279
>gi|346321399|gb|EGX90998.1| nonsense-mediated mRNA decay protein Upf3, putative [Cordyceps
militaris CM01]
Length = 635
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 95/182 (52%), Gaps = 26/182 (14%)
Query: 2 KEPLQR-----TKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSYKHQRY 53
K P QR K+++R LPP +++ + +A+ D + + +WF F PGK S
Sbjct: 63 KPPRQRQQNEGVKLILRRLPPGMTEAECVAILSDAWTLGKGKVDWFSFIPGKIS------ 116
Query: 54 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKD 106
+ AY+ L + +E + + + K + F + +E + ++VP R D
Sbjct: 117 TEAYIHLVRKDDTLALSETVRAATWEDAKNS-FTSPALVGPPCLELSAYKKVPSSKKRTD 175
Query: 107 SREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
+R+GTI +DP+++ FL+ +A PA SA+++ + + + + + TPL+EY+++K
Sbjct: 176 TRQGTIDQDPEFMAFLEGLANPAPLRESADLE----DGDDANKGESKVTTTPLVEYLKEK 231
Query: 167 RA 168
+A
Sbjct: 232 KA 233
>gi|170038524|ref|XP_001847099.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882242|gb|EDS45625.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 620
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
TKVVIR LPPS+ + FR + ++ F F G S SRAY+ +
Sbjct: 62 TKVVIRRLPPSMDEE----TFRKQIDPIPDHDDFYFVSGDWSLGKNASSRAYINFTRAED 117
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEFLKV 124
+F F + +G+ FV+ KG ++ A+VE+AP Q +P+ SR KD++ GTI D ++ F +
Sbjct: 118 IFLFKDKFDGYDFVDAKGVEYPAVVEFAPFQELPRNRSRKKDAKVGTIETDTHFVAFKEA 177
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
+ AE +A + E ++ + TPL+E++ QK+
Sbjct: 178 LE--AEEKDTAGKSKSKLEYSYKIKDEKKITSTPLLEFIAQKK 218
>gi|336262497|ref|XP_003346032.1| hypothetical protein SMAC_08533 [Sordaria macrospora k-hell]
gi|380087600|emb|CCC05281.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 813
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 18/174 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYSR---AYVELKK 62
KVV+R LPP L++ + + D + + + +WF + PGKSS R SR AY + K
Sbjct: 38 KVVVRRLPPLLTEEEFFKILGDEWKMGHGKVDWFSYWPGKSSQHPSRPSRPTRAYFHVIK 97
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFKDP 116
+ ++ + V+ + K + + VE + +++P R D+R+GTI ++P
Sbjct: 98 KDDLISLSQAVQNGVWEDAKESYNDPVLILPPTVELSIHKKIPSDKKRLDNRQGTIDQEP 157
Query: 117 DYLEFLKVIAKP--AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+++ FL+ +A P +N SA E E +G P E + TPL+EY+++K+A
Sbjct: 158 EFMAFLESLANPDAHKNTDSA---GEANAEEPTGKP-EKVTTTPLVEYLKEKKA 207
>gi|301089485|ref|XP_002895038.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103692|gb|EEY61744.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 453
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGK--SSYKHQRYSRAYVELKK-PAG 65
K+V+R++PP+ S+ + L + H + F PG+ S+ + +R YV++KK P
Sbjct: 84 KLVVRNIPPTASEQEARELMQAHGVKNELIWRFVPGRQRSNNRPPTPARLYVDMKKEPER 143
Query: 66 VFEFAELLNGHVF---VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
+ L+G F +K VE+AP Q++P+ RKD + GTI DP+YL FL
Sbjct: 144 ARKLIASLHGQFFYPDTKDKEGTKPLDVEFAPFQKIPREKQRKDVKVGTIDCDPEYLAFL 203
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+ +AKP + LPSAE ++ E E P V L++Y+ ++++
Sbjct: 204 EELAKPKDKLPSAEALVDMAEGETLEKP-----VAALVKYLNERKS 244
>gi|320031755|gb|EFW13714.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 599
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 24/197 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+++R LPP L+Q + + + +W ++PGK S K + SRAY+ +
Sbjct: 42 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWLAYKPGKLSADPSKPSKPSRAYLRV 101
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTIF 113
A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 102 TASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTID 160
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 173
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A S A
Sbjct: 161 QDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKA--SKA 210
Query: 174 QESLAVGRVGRRSRAAS 190
+E+ A R + SR+ +
Sbjct: 211 KEASAPARATKPSRSGA 227
>gi|225707714|gb|ACO09703.1| Regulator of nonsense transcripts 3B [Osmerus mordax]
Length = 297
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPPSL++ +L + Y F F S Y H ++RAY+ K +
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPLPEVDYLEF-FSSDTSMYPHL-FARAYINFKNQEDIV 93
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++ +G ++ AIVE+AP Q++ K S+K D++ GTI +DP+Y +FL+
Sbjct: 94 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKIAKKRSKKRDAKSGTIDEDPEYKKFLEYYN 153
Query: 127 KPAENLPSA-EIQLERKEAELSGAPKETLVV--TPLMEYVRQKR 167
E S E LE E+ KE + TPL+++++ K+
Sbjct: 154 ADDEKFTSTPETLLE----EIEAKSKELVAKKPTPLLDFLKNKQ 193
>gi|356522136|ref|XP_003529705.1| PREDICTED: regulator of nonsense transcripts 3A-like [Glycine max]
Length = 72
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 53 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREG 110
+SRAY++ K P VFEF E +GHVFVNE+GAQ+K IVEYAPSQRVPKP ++K +G
Sbjct: 2 HSRAYIDFKCPDDVFEFTEFFDGHVFVNERGAQYKVIVEYAPSQRVPKPSAKKMDVKG 59
>gi|195122768|ref|XP_002005883.1| GI18844 [Drosophila mojavensis]
gi|193910951|gb|EDW09818.1| GI18844 [Drosophila mojavensis]
Length = 469
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVEL--KKPAGV 66
K+V+RHLPP++++ + L + ++C P S + RAY+++ K +
Sbjct: 21 KIVVRHLPPTMTEKEFLEQVDPLPKNESYYYC--PADWSLGQEATCRAYIDMSPKDIDEI 78
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEFLKVI 125
+F + +G+VFV+ KGA++ AIVEYAP Q K +R D++ TI K+P + EFL+ +
Sbjct: 79 IQFRDRFDGYVFVDSKGAEYVAIVEYAPFQWFLKNKARSHDNKVNTIEKEPHFQEFLQKL 138
Query: 126 AKPAEN---LPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
A+ E L +I +E + TPL++Y+ K+
Sbjct: 139 AEEREEANRLGDVKIDF-----NFESRNEEKVKSTPLLQYLANKK 178
>gi|342882704|gb|EGU83304.1| hypothetical protein FOXB_06155 [Fusarium oxysporum Fo5176]
Length = 663
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 18/168 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+VIR LPP ++Q + +++ + + +WF F GK S K R RAYV + K
Sbjct: 77 KLVIRRLPPGMTQAEFVSILGSEWELGKGKVDWFSFAGGKISTDPSKPSRPGRAYVHVMK 136
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSREGTIFKD 115
+ ++ + V+ + K A F + VE+A ++VP R D+R+GTI +D
Sbjct: 137 KDDILPLSDAVRTAVWEDAK-ASFNSPSLIGPPSVEFAIYKKVPSNKKRTDARQGTIDQD 195
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
P+++ FL+ +A PA P E +E +E + G + + TPL+EY+
Sbjct: 196 PEFMAFLEELANPA---PPKET-VEGEEGDDLGKVETKVTTTPLIEYL 239
>gi|358397022|gb|EHK46397.1| hypothetical protein TRIATDRAFT_43507 [Trichoderma atroviride IMI
206040]
Length = 626
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 109/210 (51%), Gaps = 23/210 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P + KV+IR LPP L++ + L++ + N + +W + PGK K R SR
Sbjct: 43 KTPHEGEKVIIRRLPPGLTEAEFLSILGSEWAVGNGKVDWSSYAPGKVCNEISKPSRPSR 102
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSR 108
AY+ + + + ++++ + + + + F + +E + ++VP R D+R
Sbjct: 103 AYLHVMRKDYIMPLSDIVRNAAWEDAR-STFNSPSLIGPPALEISIYKKVPGNKKRVDAR 161
Query: 109 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+GTI +DP+++ FL+ +A P + EI E+ A + + TPL+EY+++K+A
Sbjct: 162 QGTIDQDPEFMAFLEGLANPVQ---PKEIT---DNEEVEDAAETKVTTTPLIEYLKEKKA 215
Query: 169 AESGAQESLAVGRVGRRSRAASASKTSSTT 198
+ Q+ A + + SR +A+K ST+
Sbjct: 216 NK---QKEAASAKSAKHSREGAATKGKSTS 242
>gi|384485135|gb|EIE77315.1| hypothetical protein RO3G_02019 [Rhizopus delemar RA 99-880]
Length = 298
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 42/176 (23%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+TKVV+R LPP LS+++ + + N+ ++ + PGK + +G
Sbjct: 34 KTKVVVRRLPPLLSKDEFMEAVKTWINEETTDYSSYIPGKVAK---------------SG 78
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI 125
E HVF + +G + +A+VE++P Q+ P+ KDSREGTI +DP+YL+FLK +
Sbjct: 79 FDE-------HVFTDSRGNESRAVVEFSPYQKTPREHKSKDSREGTIDEDPEYLDFLKRL 131
Query: 126 AKPAENLPSAEIQ---------LERKEAELSGAPKETLV--------VTPLMEYVR 164
AE +AE Q +E+ E ++ +TL TPL+E++R
Sbjct: 132 E--AEKNKTAETQDDGKDGLNPIEKLENRIAMVTAKTLAAEQANKPKTTPLLEHLR 185
>gi|307165852|gb|EFN60215.1| Regulator of nonsense transcripts 3B [Camponotus floridanus]
Length = 601
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 27/170 (15%)
Query: 8 TKVVIRHLPPSLSQNDLLALF-----RDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
TKVVIR LPP+++Q+ L DH F S +SRAY+
Sbjct: 47 TKVVIRRLPPTMTQDQFLEQVSPLPEHDHL-------YFVKADMSLGQFAFSRAYINFID 99
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYLE 120
+F F E + +VF++ KG ++ A+VE+AP QR+PK +KD + GTI D ++
Sbjct: 100 QQDIFMFREKFDNYVFIDSKGVEYPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDLYFIN 159
Query: 121 FLKVIAKPAENLPSAEIQ--LERKEAELSGAPKET----LVVTPLMEYVR 164
FL E L + E+ + + + E S P + + TPL+EY++
Sbjct: 160 FL-------EGLKNQEVDSSVTQSKTEYSYQPPDNTAKKITTTPLLEYLK 202
>gi|325093450|gb|EGC46760.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H88]
Length = 579
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 22/191 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK---SSYKHQRYSRAYVELKK 62
KV+IR LPP L+ + +A+ D + N + +WF F+ GK K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKIDWFRFKEGKVFKDPAKPSRPTRAYLRVTS 98
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKDP 116
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTGRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 176
D++ FL+ + P A+I + + +E +TPL++++++KRA + +E+
Sbjct: 159 DFITFLESLTNPVTKS-VADIAADDTK-------EEKPTITPLIQFLKEKRANK--GKET 208
Query: 177 LAVGRVGRRSR 187
+ R R SR
Sbjct: 209 SSPARPSRHSR 219
>gi|361128996|gb|EHL00920.1| putative Regulator of nonsense transcripts 3A [Glarea lozoyensis
74030]
Length = 594
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 26/184 (14%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P + KV++R LPP L++ + +++ + + + +++ ++PGK S K R SR
Sbjct: 36 KPPAPKLKVIVRRLPPGLTEAEFISVLGNDWKLGQGKVDYYVYKPGKDSKDPSKPSRPSR 95
Query: 56 AYVELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 109
AY L + +EL+ VF N VE+AP RVP R D+R
Sbjct: 96 AYFHLTNENYLMTLSELVRQSVFEDAQNTFNNPCLIGPPSVEFAPYNRVPGGRRRVDARA 155
Query: 110 GTIFKDPDYLEFLKVIAKPAENL-----PSAEIQLERKEAELSGAPKETLVVTPLMEYVR 164
GTI +D +++ FL+ +A P P+AE +SG P E + TPL++Y++
Sbjct: 156 GTIDQDSEFMSFLEGLANPTTTKDTGADPAAE--------GVSGKP-EKVTTTPLVQYLK 206
Query: 165 QKRA 168
K+A
Sbjct: 207 DKKA 210
>gi|198421280|ref|XP_002130416.1| PREDICTED: similar to UPF3 regulator of nonsense transcripts
homolog B [Ciona intestinalis]
Length = 434
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 5 LQRTKVVIRHLPPSLSQN---DLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELK 61
L +TKVV+R LPP L++ +L+ H ++F F G + + RAY+
Sbjct: 24 LIQTKVVMRRLPPGLTEEQFKELIGTLPPH-----DYFRFVSGDRTLVPNNFCRAYINFI 78
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLE 120
+F+F + +GH F + G + +VE+AP Q++P+ +K D + TI +DPDY +
Sbjct: 79 NTDDIFKFRDRFDGHEFEFKNGTKHPCVVEFAPFQKIPRKNRKKEDLKVDTIEQDPDYQK 138
Query: 121 FLKVI-AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
FL+ + + + + E L+ E EL +V TPL +++QKR
Sbjct: 139 FLETLDEEEEKEILDVEKYLD--ELELREKKNHKMVETPLTAFIKQKR 184
>gi|322701830|gb|EFY93578.1| nonsense-mediated mRNA decay protein Upf3, putative [Metarhizium
acridum CQMa 102]
Length = 660
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 34/221 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+VIR LPP +++ + +++ + + +WF + PGK S K R RAYV L +
Sbjct: 88 KLVIRRLPPGMTKEECISILGPEWEISKGKVDWFSYVPGKISIDPSKPSRPGRAYVHLVR 147
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFK-------AIVEYAPSQRVPKPFSRKDSREGTIFKD 115
+ ++++ + + K + F ++E++ ++VP R D+R+GTI +D
Sbjct: 148 KDDIMPLSDVVRNATWEDAK-STFTNPSLIGPPVLEFSIYKKVPGTKKRTDARQGTIDQD 206
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA------- 168
P+++ FL+ +A PA S +++ +A+ S + + TPL+E++++K+A
Sbjct: 207 PEFMAFLEGLANPAPMRDSIDVE----DADESAKVEVKVTTTPLVEFLKEKKANRGKDGS 262
Query: 169 --------AESGAQESLAVGR-VGRRSRAASASKTSSTTTK 200
+SGA++ + GR G+ SR KT K
Sbjct: 263 GKNSKSAKGKSGAKDDDSSGRKKGKESRTEKQDKTPKENVK 303
>gi|225556833|gb|EEH05120.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 579
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK---SSYKHQRYSRAYVELKK 62
KV+IR LPP L+ + +A+ D + N + +WF F+ GK K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKVDWFRFKEGKVFKDPAKPSRPTRAYLRVTS 98
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKDP 116
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTSRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 176
D++ FL+ + P A+I + +E +TPL++++++KRA + +E+
Sbjct: 159 DFITFLESLTNPVTKS-VADIAADDTR-------EEKPTITPLIQFLKEKRANK--GKET 208
Query: 177 LAVGRVGRRSR 187
+ R R SR
Sbjct: 209 SSPARPSRHSR 219
>gi|83768844|dbj|BAE58981.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 558
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSYKHQRYSRAYVELKKP 63
R K+++R LPP L+Q + + + +WF ++PGK S + L
Sbjct: 44 RLKLLVRRLPPGLTQAEFEVAVGPEWKLGAGKIDWFQYKPGKVSKDDH-----IIPLSNK 98
Query: 64 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLK 123
F + N N+ VEYAP +VP RKD+R+GTI +DPD++ FL+
Sbjct: 99 VRQVSFTDARN---TFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQDPDFIAFLE 155
Query: 124 VIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+ +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 156 SLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 194
>gi|12860428|dbj|BAB31954.1| unnamed protein product [Mus musculus]
gi|74189593|dbj|BAE36799.1| unnamed protein product [Mus musculus]
Length = 232
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +FL+
Sbjct: 107 ILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|358378266|gb|EHK15948.1| hypothetical protein TRIVIDRAFT_184401 [Trichoderma virens Gv29-8]
Length = 625
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 93/173 (53%), Gaps = 20/173 (11%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAY 57
P + KV+IR LPP +++ + L++ + + + +WF + PGK+S K R +RAY
Sbjct: 44 PHEGEKVIIRRLPPGMTEAECLSILGSEWAVGSGKVDWFSYAPGKASNELSKPSRPARAY 103
Query: 58 VELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSREG 110
+ + + + +E++ + + K F + +E + ++VP R D+R+G
Sbjct: 104 LHVMRKDYIMPLSEVVRSATWEDAK-CTFNSSSLIGPPALEMSIYKKVPGTKKRVDARQG 162
Query: 111 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
TI +DP+++ FL+ +A PA P I+ E ++ AP+ + TPL+EY+
Sbjct: 163 TIDQDPEFMAFLEGLANPAP--PREGIENE----DVEEAPETKVTTTPLIEYL 209
>gi|341038519|gb|EGS23511.1| hypothetical protein CTHT_0002050 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 805
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSY---KHQRYSR 55
K P Q K+VIR LPP +++++ L + D + N + +W F PGK S K R +R
Sbjct: 29 KPPPQGEKIVIRRLPPGMTEDEFLKILGDEWKPGNGKVDWLTFWPGKVSQHPSKPSRPAR 88
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQ------FKAIVEYAPSQRVPKPFSRKDSRE 109
AY+ + + + + + G + + K VE+A +++P R DS++
Sbjct: 89 AYLHVIQRDLLPALLQTVQGAKWEDAKATWDDPALISPPTVEFAVYKKIPGDKKRVDSKQ 148
Query: 110 GTIFKDPDYLEFLKVIAKP---AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
GTI DP+++ FL+ +A P E P E E A + TPL+EY+++
Sbjct: 149 GTIDSDPEFMAFLEALANPDAVKETRPELETSAEE------AAKNAVVTTTPLIEYLKE 201
>gi|357618013|gb|EHJ71109.1| Upf3 regulator of nonsense transcripts-like protein B [Danaus
plexippus]
Length = 509
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 28/249 (11%)
Query: 8 TKVVIRHLPPSLSQNDLLALF-----RDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
TK+++R LPP++++ L DHF +F +P +S + YSRAY+
Sbjct: 35 TKIILRRLPPTMTEEAFLEQVSPIPEHDHF-----YFA-KPD-NSLGNNVYSRAYINFVN 87
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
++ F + +G+VF++EKG ++ IVEYAP QR+PK +KD + GTI DP Y EF+
Sbjct: 88 VDDIYLFRDKFDGYVFLDEKGVEYVGIVEYAPFQRIPKKKKKKDPKCGTIESDPIYQEFV 147
Query: 123 KVIAKPAE--NLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 180
+ ++K E N P E ++ + TPL+EY+ ++ + G E
Sbjct: 148 ENLSKEQETDNQPKLEYSY-----PVNDNNDKKNQSTPLLEYLAARKQDKRGRDERRRRE 202
Query: 181 RVGRRSRAASASKTSSTTTKRGSEKKKYILK---------DSAKNARRKDKSTFTVVAKR 231
R+ R +K S+ + E +K D+ ++ + DK F R
Sbjct: 203 NDKRKMRIERKTKDSTIKEEDFVENDIRKIKSREWDKEKADTKEDQVKSDKDVFEYKTYR 262
Query: 232 EDQPASSSG 240
E + A+S+
Sbjct: 263 EQRKAASTS 271
>gi|342320545|gb|EGU12485.1| Hypothetical Protein RTG_01519 [Rhodotorula glutinis ATCC 204091]
Length = 444
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 6 QRTKVVIRHLPPSLSQNDLL-----ALFRDHFND-------RYNWFCFRPGK----SSYK 49
QR K+V+R LPP L + R+ +D + W ++ GK K
Sbjct: 14 QRLKLVVRRLPPDLPPAVFWKTVSPWVTREDVDDEGQEGAEKVVWSEYKQGKVRRSGKDK 73
Query: 50 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 109
SRAY+ + P + F+ +G F ++ G +A+VE+AP QR+P ++ D R+
Sbjct: 74 DSVQSRAYITFRTPDALVAFSRGYDGWSFRDKTGNVSQAVVEFAPYQRIPTAPAKADPRQ 133
Query: 110 GTIFKDPDYLEFLKVI-AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
GTI DPD+L F + + A PA P+ + K TPL+EY+RQ++A
Sbjct: 134 GTIDDDPDFLAFQEALTAAPATPQPAETPAVNPKS-------------TPLLEYLRQQKA 180
Query: 169 A 169
A
Sbjct: 181 A 181
>gi|301622005|ref|XP_002940331.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 463
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
+KVVIR LPPSL++ L L DH ++F F SS +SRAY+ K
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLFPHMFSRAYINFKSQD 91
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 123
+ F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y +FL
Sbjct: 92 DIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLD 151
Query: 124 VIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVR 164
E L S E LE E+ KE + TPL+ +++
Sbjct: 152 SYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLK 191
>gi|340719970|ref|XP_003398417.1| PREDICTED: hypothetical protein LOC100643701 isoform 1 [Bombus
terrestris]
Length = 626
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 19/163 (11%)
Query: 14 HLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFA 70
+ PP ++Q L + +H ++ F S +SRAY+ + +F F
Sbjct: 52 YEPPXMTQEQFLEQVSPLPEH-----DYLYFVKADMSLGQYAFSRAYINFVEQQDIFMFR 106
Query: 71 ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYLEFLKVIAKP 128
E + +VFV+ KG ++ A+VE+AP QR+PK +KD + GTI DP Y+ FL+ +
Sbjct: 107 EKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCGTIESDPYYISFLESLKN- 165
Query: 129 AENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 167
AE + + + E S P + + TPL+EYV+Q++
Sbjct: 166 ----QEAESNISQPKTEYSYQPPDNTPKKVTTTPLLEYVKQRK 204
>gi|239612565|gb|EEQ89552.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ER-3]
Length = 571
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L+ + A+ D + N + +WF ++ GK S K R +R Y+ +
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRV 96
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
V E +E + F + + +V EYAP RVP R+D R+GTI
Sbjct: 97 TSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDL 156
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQ 174
D D++ FL+ + P P+ +I E + +E +TPL+++++ K+A +
Sbjct: 157 DSDFIAFLESLTNPVTK-PAMDIGAEDTK-------EEKPTITPLIQFLKDKKANKGKEA 208
Query: 175 ESL 177
SL
Sbjct: 209 SSL 211
>gi|327355537|gb|EGE84394.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 571
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L+ + A+ D + N + +WF ++ GK S K R +R Y+ +
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRV 96
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
V E +E + F + + +V EYAP RVP R+D R+GTI
Sbjct: 97 TSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDL 156
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQ 174
D D++ FL+ + P P+ +I E + +E +TPL+++++ K+A +
Sbjct: 157 DSDFIAFLESLTNPVTK-PAMDIGAEDTK-------EEKPTITPLIQFLKDKKANKGKEA 208
Query: 175 ESL 177
SL
Sbjct: 209 SSL 211
>gi|261203062|ref|XP_002628745.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
gi|239590842|gb|EEQ73423.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
Length = 571
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L+ + A+ D + N + +WF ++ GK S K R +R Y+ +
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRV 96
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
V E +E + F + + +V EYAP RVP R+D R+GTI
Sbjct: 97 TSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDL 156
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQ 174
D D++ FL+ + P P+ +I E + +E +TPL+++++ K+A +
Sbjct: 157 DSDFIAFLESLTNPVTK-PAMDIGAEDTK-------EEKPTITPLIQFLKDKKANKGKEA 208
Query: 175 ESL 177
SL
Sbjct: 209 SSL 211
>gi|451845066|gb|EMD58380.1| hypothetical protein COCSADRAFT_62417, partial [Cochliobolus
sativus ND90Pr]
Length = 603
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 22/179 (12%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSR 55
K P R K++ R LPP L++ + + + D + R +W +R GK S K + +R
Sbjct: 27 KPPQPRLKLICRRLPPGLTKQEFVNVLGDDWKLGAGRIDWLSYRKGKISTDAAKPSKPAR 86
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSRE 109
AY+ + KP V + + F + K Q +V EYAP ++P R D+R+
Sbjct: 87 AYLHVTKPDHVKALGDYIRALSFHDAAKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQ 146
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
GTI +D ++ +FL+ + P P+ E S APK+ + TPL+E +R+K+A
Sbjct: 147 GTIDQDQEFKDFLESLTNPITKPPAPE----------SEAPKDKVKTTPLIEALREKKA 195
>gi|405121729|gb|AFR96497.1| hypothetical protein CNAG_03276 [Cryptococcus neoformans var.
grubii H99]
Length = 415
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 29/164 (17%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGK---SSY-KHQRYSRAYVELK 61
R K+VIR LPP+L ++ D+ W F GK S+Y H YSRAYV +
Sbjct: 11 RNKLVIRRLPPTLPEDIFWQSVSTWITDKTCLWKSFVKGKAGDSTYDSHPVYSRAYVLMA 70
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPDYLE 120
P + F A+F+A+VEYAP Q+ P K + D+R+GT+ +DPDYL
Sbjct: 71 DPESLINFHR------------AEFQAVVEYAPFQKTPLKTKVKVDNRQGTVDEDPDYLS 118
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 164
F++ + N P + LE P TPL+E++R
Sbjct: 119 FIESL-----NAPVTKPVLE------VATPVAQPTTTPLLEHLR 151
>gi|301622007|ref|XP_002940332.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 465
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
+KVVIR LPPSL++ L L DH ++F F SS +SRAY+ K
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLFPHMFSRAYINFKSQD 91
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 123
+ F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y +FL
Sbjct: 92 DIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLD 151
Query: 124 VIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVR 164
E L S E LE E+ KE + TPL+ +++
Sbjct: 152 SYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLK 191
>gi|334350192|ref|XP_001372586.2| PREDICTED: regulator of nonsense transcripts 3B-like [Monodelphis
domestica]
Length = 564
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KV+IR LPP+L++ L +H +++F F SS +SRAY+ K
Sbjct: 139 SKVIIRRLPPTLTKEQL----EEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQED 194
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 195 IVLFRDRFDGYVFVDHKGQEYPAIVEFAPFQKSAKKKNKKKDAKTGTIEDDPEYKKFLES 254
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
E L S E LE E+ KE + TPL+ +++ K
Sbjct: 255 YCAEEEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 295
>gi|301622003|ref|XP_002940330.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 508
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
+KVVIR LPPSL++ L L DH ++F F SS +SRAY+ K
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLFPHMFSRAYINFKSQD 91
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 123
+ F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y +FL
Sbjct: 92 DIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLD 151
Query: 124 VIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVR 164
E L S E LE E+ KE + TPL+ +++
Sbjct: 152 SYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLK 191
>gi|395855174|ref|XP_003800045.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3A [Otolemur garnettii]
Length = 556
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L+Q L R Y F F S Y H YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPGLTQEQLQEQLRPLPAHDYFEF-FSADLSLYPHL-YSRAYINFRNPDDIL 124
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKPKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 127 KPAEN-LPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + E L E+ +E + TPL+EY++ ++
Sbjct: 185 VEEEKAIANPETLL----GEIEAKTRELIARRTTPLLEYIKNRK 224
>gi|315053341|ref|XP_003176044.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
gi|311337890|gb|EFQ97092.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
Length = 606
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+ +R LPP L+Q + + D++ + +WF F+ GK S K R RAY+ +
Sbjct: 42 RLKLHVRRLPPGLTQAEFESTLGDYWKVGQGKIDWFLFKEGKVSTDPSKPSRPGRAYLRV 101
Query: 61 KKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
+ E +E + F N+ +EYAP RVP +R D+R GTI +
Sbjct: 102 TSSVTIPELSEAIRQTAFRDARNTCNDSALLGPPTLEYAPFSRVPSVKTRNDARVGTIDQ 161
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
D +++ FL+ + P P E +AE +TPL++Y+R+
Sbjct: 162 DAEFIAFLESLTNPVTKPPEEETAETADKAEKP-------TITPLIQYLRE 205
>gi|156034344|ref|XP_001585591.1| hypothetical protein SS1G_13475 [Sclerotinia sclerotiorum 1980]
gi|154698878|gb|EDN98616.1| hypothetical protein SS1G_13475 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 619
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
+ K+++R L P L++ + ++ D + + +WF ++ GK S K R SRAY+ L
Sbjct: 38 KLKLIVRRLAPGLTEVEFFSVLGDEWKVGQGKVDWFQYKLGKDSKDPSKPSRPSRAYLHL 97
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRK-DSREGTIF 113
+ F+E++ F + K + VE+AP RVP R+ D+R GTI
Sbjct: 98 TSGDHLLPFSEVVRKSSFEDAKNTYTDSCLIGPPSVEFAPYSRVPAGLKRRTDARAGTID 157
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+DP+++ FL+ +A P + + EI + E +G P E + VTPL+++++ K+A
Sbjct: 158 QDPEFMAFLEGLANP---VTTKEIGAD-GEDPPTGKP-EKVTVTPLVQFLKDKKA 207
>gi|194885777|ref|XP_001976490.1| GG19981 [Drosophila erecta]
gi|190659677|gb|EDV56890.1| GG19981 [Drosophila erecta]
Length = 489
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 29/172 (16%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDH-FNDRYNWFCFRPGKSSYKHQRYSRAYVEL--KK 62
Q K+V+RHLPP++++ + L ND Y ++C S H+ RAY+++ K
Sbjct: 28 QIIKIVMRHLPPTMTEAEFLEQVGPLPENDSY-YYC--KADWSLGHEATCRAYIDMSSKD 84
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEF 121
V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI +P Y EF
Sbjct: 85 ITEVLQFRDRFDGYVFVDNKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIEIEPHYQEF 144
Query: 122 LKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 163
+K A+ ER+EA G K E + TPL++Y+
Sbjct: 145 IKRQAE------------EREEASRMGDVKIEFNIDRRTDEKVKSTPLLQYL 184
>gi|340719972|ref|XP_003398418.1| PREDICTED: hypothetical protein LOC100643701 isoform 2 [Bombus
terrestris]
gi|340719974|ref|XP_003398419.1| PREDICTED: hypothetical protein LOC100643701 isoform 3 [Bombus
terrestris]
Length = 570
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 36 YNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS 95
+++ F S +SRAY+ + +F F E + +VFV+ KG ++ A+VE+AP
Sbjct: 16 HDYLYFVKADMSLGQYAFSRAYINFVEQQDIFMFREKFDNYVFVDSKGTEYPAVVEFAPF 75
Query: 96 QRVPKPF--SRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKET 153
QR+PK +KD + GTI DP Y+ FL+ + AE + + + E S P +
Sbjct: 76 QRLPKKRIGKKKDLKCGTIESDPYYISFLESLKN-----QEAESNISQPKTEYSYQPPDN 130
Query: 154 ----LVVTPLMEYVRQKR 167
+ TPL+EYV+Q++
Sbjct: 131 TPKKVTTTPLLEYVKQRK 148
>gi|170095539|ref|XP_001878990.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646294|gb|EDR10540.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 520
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSS---YKHQRYSRA 56
+++ ++R K V+R LPP+L ++ + + +W F GKS K SRA
Sbjct: 32 LQQSIERLKTVVRRLPPNLPEDVFWQSVQPWVTEESVSWKVFYAGKSRKRLSKENIPSRA 91
Query: 57 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 116
Y+ K + +F+ +GH+F ++ G + AIVE+AP Q+VP + D+R TI KD
Sbjct: 92 YIAFKSEEKLAQFSREYDGHLFRDKAGNESYAIVEFAPYQKVPTEKRKPDARNATIEKDE 151
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
DY+ F+ + A P LE A AP+ TPL+E ++ +++A
Sbjct: 152 DYISFIDSLNASANAEPPT---LEALIASTQQAPQPK--TTPLLEALKAEKSA 199
>gi|401411995|ref|XP_003885445.1| hypothetical protein NCLIV_058400 [Neospora caninum Liverpool]
gi|325119864|emb|CBZ55417.1| hypothetical protein NCLIV_058400 [Neospora caninum Liverpool]
Length = 581
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG--KSSYKHQRYSRAYVELKKPA 64
+TKV +R LPPS+ + +L AL + ++ W F PG + R S YV
Sbjct: 270 KTKVAVRLLPPSVREEELFALVAESVQEKIAWTRFVPGCQHKPGESSRNSTWYVNFAAEE 329
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
EF + +G FV+E+ FKA+ AP Q+VP+ + D REGT+ D YL+FL+
Sbjct: 330 DAEEFIKSFHGKAFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGTLANDSLYLDFLRA 388
Query: 125 I 125
+
Sbjct: 389 L 389
>gi|134113891|ref|XP_774193.1| hypothetical protein CNBG1750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256828|gb|EAL19546.1| hypothetical protein CNBG1750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 415
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 29/169 (17%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCF---RPGKSSY-KHQRYSRAYVELK 61
R K+VIR LPP+L ++ D+ W F + G S+Y H YSRAYV +
Sbjct: 11 RNKLVIRRLPPTLPEDIFWQSVSAWITDKNCLWKSFIKGKAGDSNYDSHPVYSRAYVLMA 70
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPDYLE 120
P + F ++F+A+VEYAP Q+ P K + D+R+GTI +DPDYL
Sbjct: 71 DPESLVNFHR------------SEFQAVVEYAPFQKAPLKTKVKVDNRQGTIDEDPDYLS 118
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
+++ + N P + LE P TPL+E++R +++A
Sbjct: 119 YIQSL-----NAPVTKPVLE------VATPVAQPTTTPLLEHLRSQKSA 156
>gi|17863070|gb|AAL40012.1| SD10857p [Drosophila melanogaster]
Length = 450
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 37/176 (21%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
Q K+V+RHLPP++++ A F D ND Y ++C S + RAY+++
Sbjct: 28 QIVKIVMRHLPPTMTE----AQFLDQVGPLPENDSY-YYC--KADWSLGQEATCRAYIDM 80
Query: 61 --KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI +P
Sbjct: 81 SSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPH 140
Query: 118 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 163
Y EF+K +A+ ER+EA G K E + TPL++Y+
Sbjct: 141 YQEFIKRLAQ------------EREEASRMGDVKIDFNFERRTEEKVKSTPLLQYL 184
>gi|158296237|ref|XP_316679.4| AGAP006649-PA [Anopheles gambiae str. PEST]
gi|157016415|gb|EAA10775.4| AGAP006649-PA [Anopheles gambiae str. PEST]
Length = 661
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 23/175 (13%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF--------NDRYNWFCFRPGKSSYKHQRYSR 55
P T+VVIR LPP++++ ALF + ND F F + R
Sbjct: 65 PAPMTRVVIRRLPPTMTE----ALFCEQIAVDGKLPANDE---FYFVGPDWTLGQNASCR 117
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFK 114
AY+ PA +F F + +G+ FV+ KG +++A+VEYAP Q K +R KD + GTI
Sbjct: 118 AYINFTNPADIFRFTDSYDGYTFVDSKGMEYQAVVEYAPFQGPLKARARKKDPKCGTIES 177
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSG--APKETLVVTPLMEYVRQKR 167
D ++ F + + K E E R E S +E TPL+EY+ Q++
Sbjct: 178 DTHFIAFKEALEKEQE-----EALHGRGTQEFSFKIEQEEKTTTTPLLEYIAQRK 227
>gi|395527256|ref|XP_003765766.1| PREDICTED: regulator of nonsense transcripts 3A [Sarcophilus
harrisii]
Length = 554
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEF 69
VVIR LPPSL++ L H +++F F S YSRAY+ + P + F
Sbjct: 133 VVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPDDILLF 190
Query: 70 AELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAKP 128
+ +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y +FL+
Sbjct: 191 RDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRKFLETYCVE 250
Query: 129 AENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + L E+ +E + TPL+EY++ ++
Sbjct: 251 EEKISANPETL---LGEIEAKTRELIARRTTPLLEYIKNRK 288
>gi|345326166|ref|XP_001509880.2| PREDICTED: regulator of nonsense transcripts 3B-like
[Ornithorhynchus anatinus]
Length = 530
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
KVVIR LPPSL++ L +H +++F F SS +SRAY+ K +
Sbjct: 102 KVVIRRLPPSLTKEQL----EEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDI 157
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVI 125
F + +G+VF++ KG ++ AIVE+AP Q+ K S+K + GTI +DP+Y +FL+
Sbjct: 158 VLFRDRFDGYVFIDHKGQEYPAIVEFAPFQKSAKKKSKKKDAKTGTIDEDPEYKKFLESY 217
Query: 126 AKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 218 SADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 257
>gi|395545866|ref|XP_003774818.1| PREDICTED: regulator of nonsense transcripts 3B, partial
[Sarcophilus harrisii]
Length = 426
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KV+IR LPP+L++ L +H +++F F SS +SRAY+ K
Sbjct: 3 SKVIIRRLPPTLTKEQL----EEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQED 58
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VFV+ KG ++ AIVE+AP Q K +KD++ GTI DP+Y +FL+
Sbjct: 59 IVLFRDRFDGYVFVDHKGQEYPAIVEFAPFQKSAKKKNKKKDAKSGTIEDDPEYKKFLES 118
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
E L S E LE E+ KE + TPL+ +++ K
Sbjct: 119 YCAEEEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 159
>gi|344286156|ref|XP_003414825.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 2
[Loxodonta africana]
Length = 470
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVV+R LPP+L++ LL +H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVVRRLPPTLTKEQLL----EHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
A E + S E LE E+ +E + TPL+ +++ K
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNK 207
>gi|291407875|ref|XP_002720172.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B isoform
2 [Oryctolagus cuniculus]
Length = 470
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|443925907|gb|ELU44664.1| smg-4/UPF3 family domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 442
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+ KVVIR LPP+L +N D + W + P + SRAYVE P
Sbjct: 156 KLKVVIRRLPPNLPENIFWQSVAQWVTDESSSWKLYVPENTP------SRAYVEFVTPEA 209
Query: 66 VFEFAELLNGHVF----------VNEK-------GAQFKAIVEYAPSQRVPKPFSRKDSR 108
V F+ NGHVF VN + G + A+VEYAP Q+VP + D++
Sbjct: 210 VVAFSRDYNGHVFRDKQGEFIPNVNTRTIEHSSLGNESAAVVEYAPYQKVPHEKRKADAK 269
Query: 109 EGTIFKDPDYLEFLKVIAKPAENLP 133
GTI D D++ FL+ + KPAE P
Sbjct: 270 IGTIETDEDFISFLEALNKPAEPTP 294
>gi|354475717|ref|XP_003500074.1| PREDICTED: regulator of nonsense transcripts 3B-like [Cricetulus
griseus]
Length = 434
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
+VVIR LPP+L++ L ++H +++F F +S ++RAY+ K +
Sbjct: 3 RVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFANDTSLYPHMFARAYINFKNQEDI 58
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKVI 125
F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +FL+
Sbjct: 59 LLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKRIKKRDTKVGTIDDDPEYRKFLETY 118
Query: 126 AKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 119 ATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 159
>gi|351709915|gb|EHB12834.1| Regulator of nonsense transcripts 3B [Heterocephalus glaber]
Length = 490
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTREQL----QEHLQPMAEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|344286154|ref|XP_003414824.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 1
[Loxodonta africana]
Length = 483
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVV+R LPP+L++ LL +H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVVRRLPPTLTKEQLL----EHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|355705111|gb|EHH31036.1| Nonsense mRNA reducing factor 3B [Macaca mulatta]
gi|355757661|gb|EHH61186.1| Nonsense mRNA reducing factor 3B [Macaca fascicularis]
Length = 483
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDCFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|363732885|ref|XP_003641170.1| PREDICTED: regulator of nonsense transcripts 3B-like [Gallus
gallus]
Length = 478
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSL++ L +H +++F F SS +SRAY+ +
Sbjct: 55 SKVVIRRLPPSLTREQL----EEHLQPLPEHDYFEFFANDSSLYPHVFSRAYINFRNQED 110
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI DP+Y +FL+
Sbjct: 111 IVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLES 170
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 171 YSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 211
>gi|53136728|emb|CAG32693.1| hypothetical protein RCJMB04_32p8 [Gallus gallus]
Length = 478
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSL++ L +H +++F F SS +SRAY+ +
Sbjct: 55 SKVVIRRLPPSLTREQL----EEHLQPLPEHDYFEFFANDSSLYPHVFSRAYINFRNQED 110
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI DP+Y +FL+
Sbjct: 111 IVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLES 170
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 171 YSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 211
>gi|291407873|ref|XP_002720171.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B isoform
1 [Oryctolagus cuniculus]
Length = 483
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|449498917|ref|XP_002191655.2| PREDICTED: regulator of nonsense transcripts 3B [Taeniopygia
guttata]
Length = 446
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
+VVIR LPPSL++ L +H +++F F SS +SRAY+ K +
Sbjct: 24 QVVIRRLPPSLTKEQL----EEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDI 79
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVI 125
F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI DP+Y +FL+
Sbjct: 80 VLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESY 139
Query: 126 AKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 140 SADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 179
>gi|449483599|ref|XP_002192806.2| PREDICTED: regulator of nonsense transcripts 3A [Taeniopygia
guttata]
Length = 559
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L H +++F F S YSRAY+ + P +
Sbjct: 136 SKVVIRRLPPCLTKEQLEEQL--HPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDIL 193
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK-VI 125
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 194 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYC 253
Query: 126 AKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A + + EI L E+ +E + TPL+EY++ ++
Sbjct: 254 ADEDKICANPEILL----GEIEAKTRELIARRTTPLLEYIKNRK 293
>gi|301774362|ref|XP_002922607.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 2
[Ailuropoda melanoleuca]
Length = 470
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|301774360|ref|XP_002922606.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 1
[Ailuropoda melanoleuca]
gi|281340900|gb|EFB16484.1| hypothetical protein PANDA_011582 [Ailuropoda melanoleuca]
Length = 483
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|118084366|ref|XP_416933.2| PREDICTED: regulator of nonsense transcripts 3A [Gallus gallus]
Length = 538
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L H +++F F S YSRAY+ + P +
Sbjct: 115 SKVVIRRLPPCLTKEQLEEQL--HPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDIL 172
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 173 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYC 232
Query: 127 KPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + E L E+ +E + TPL+EY++ ++
Sbjct: 233 ADEEKICANPETLL----GEIEAKTRELIARRTTPLLEYIKNRK 272
>gi|395329442|gb|EJF61829.1| hypothetical protein DICSQDRAFT_136334 [Dichomitus squalens
LYAD-421 SS1]
Length = 486
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSYKHQRY---SRAYVELK 61
+R K V+R LPP+L ++ D W + GK + + SRAY+ +
Sbjct: 33 ERLKTVVRRLPPNLPEDIFWQSVGKWVTDETVTWKAYYQGKFKTRLNKENIPSRAYIAFR 92
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
+ F+ +GH+F ++ G + AIVE+AP Q+VP + DSR GTI KD DY+ F
Sbjct: 93 DEEILATFSREYDGHLFRDKNGNESIAIVEFAPFQKVPNEKKKADSRAGTIEKDEDYISF 152
Query: 122 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 170
L+ + K + P LE A AP T TPL+E ++ +++A+
Sbjct: 153 LESL-KEVSSKPFDLDTLETLIASTQPAPLPT--TTPLLEALKAEKSAQ 198
>gi|358414874|ref|XP_002701034.2| PREDICTED: regulator of nonsense transcripts 3A [Bos taurus]
gi|359071208|ref|XP_002692049.2| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Bos
taurus]
Length = 512
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E ++ +E + TPL+EY++ ++
Sbjct: 185 VEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 224
>gi|121699958|ref|XP_001268244.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
clavatus NRRL 1]
gi|119396386|gb|EAW06818.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
clavatus NRRL 1]
Length = 580
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 19/169 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSYKH---QRYSRAYVEL 60
R K+++R LPP L+Q + + + +W+ ++PGK + H R SRAY+ +
Sbjct: 38 RLKLLVRRLPPGLTQTEFENALGSEWAIGAGKVDWYQYKPGKIAKDHAKPSRPSRAYIHV 97
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
+ ++ + F++ + ++ E++P ++P RKD+R+GTI +
Sbjct: 98 TSSEHIASLSDKVRQTPFIDSRNTVNDPVLLGPPSLEFSPYAKIPGSRVRKDARQGTIDQ 157
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
DP+++ FL+ + +P + +E EA+ KET+ TPL++Y+
Sbjct: 158 DPEFIAFLESLTQPI----TKPAPVESAEADEK---KETVTTTPLVQYI 199
>gi|426236951|ref|XP_004012426.1| PREDICTED: regulator of nonsense transcripts 3A [Ovis aries]
Length = 487
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 41 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 98
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 99 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIDDDPEYKKFLETYC 158
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E ++ +E + TPL+EY++ ++
Sbjct: 159 VEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 198
>gi|296481607|tpg|DAA23722.1| TPA: UPF3 regulator of nonsense transcripts homolog A isoform 1
[Bos taurus]
Length = 508
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E ++ +E + TPL+EY++ ++
Sbjct: 185 VEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 224
>gi|327289668|ref|XP_003229546.1| PREDICTED: regulator of nonsense transcripts 3B-like [Anolis
carolinensis]
Length = 468
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSL++ L +H +++F F +S +SRAY+ K
Sbjct: 44 SKVVIRRLPPSLTKEQL----EEHLQPLPEHDYFEFFANDTSLYPHMFSRAYINFKNQED 99
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKV 124
+ F + +G+VFV+ KG ++ AIVE+AP Q K +KD++ GTI DP+Y +FL+
Sbjct: 100 IVLFRDRFDGYVFVDHKGLEYPAIVEFAPFQKAAKKKSKKKDAKAGTIDDDPEYKKFLES 159
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 160 YSADDEKLTSTPETLLE----EIEAKNKELIAKKTTPLLNFLKNK 200
>gi|296189035|ref|XP_002742608.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1
[Callithrix jacchus]
Length = 472
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L H +++F F S YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYVFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + EI L E+ +E + TPL+EY++ ++
Sbjct: 186 VEEEKTSTNPEILL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|193787549|dbj|BAG52755.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|400598965|gb|EJP66672.1| nonsense-mediated mRNA decay protein Upf3 [Beauveria bassiana ARSEF
2860]
Length = 645
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 34/220 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
K+++R LPP +++ + +A+ D + + +W F PGK S K R +RAY+ L K
Sbjct: 75 KLILRRLPPGMTEAECVAILGDRWIVGKGKVDWSSFIPGKISTDPSKPSRPARAYIHLIK 134
Query: 63 PAGVFEFAELLNGHVFVNEKGA-QFKAIV-----EYAPSQRVPKPFSRKDSREGTIFKDP 116
+ +E + + + K + A+V E + ++VP R D+R+GTI +DP
Sbjct: 135 KDDMLALSETVIAATWEDAKNSFTSPALVGPPSLELSAYKKVPNNKKRTDARQGTIDQDP 194
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES----- 171
+++ FL+ +A P +P + + G K + TPL+EY+++K+A +S
Sbjct: 195 EFMAFLEGLANP---VPLRDSADLDDDDANKGENK--VTTTPLVEYLKEKKANKSKDSSA 249
Query: 172 ----------GAQESLAVGRVGRRSRAASASKT--SSTTT 199
G++E + GR SRA K SSTTT
Sbjct: 250 GKKRGETKSKGSKEDEPSKKKGRESRAEKTEKVEKSSTTT 289
>gi|18375528|ref|NP_542199.1| regulator of nonsense transcripts 3B isoform 1 [Homo sapiens]
gi|397469625|ref|XP_003806446.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Pan
paniscus]
gi|426397256|ref|XP_004064839.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Gorilla
gorilla gorilla]
gi|60390643|sp|Q9BZI7.1|REN3B_HUMAN RecName: Full=Regulator of nonsense transcripts 3B; AltName:
Full=Nonsense mRNA reducing factor 3B; AltName:
Full=Up-frameshift suppressor 3 homolog B; Short=hUpf3B;
AltName: Full=Up-frameshift suppressor 3 homolog on
chromosome X; Short=hUpf3p-X
gi|12620408|gb|AAG60691.1|AF318576_1 UPF3X [Homo sapiens]
gi|119610248|gb|EAW89842.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Homo sapiens]
gi|119610250|gb|EAW89844.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Homo sapiens]
Length = 483
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|195347253|ref|XP_002040168.1| GM15496 [Drosophila sechellia]
gi|194135517|gb|EDW57033.1| GM15496 [Drosophila sechellia]
Length = 491
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 37/180 (20%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
Q K+V+RHLPP++++ A F D ND Y ++C S + RAY+++
Sbjct: 28 QVVKIVMRHLPPTMTE----AQFLDQVGPLPENDSY-YYC--KADWSLGQEATCRAYIDM 80
Query: 61 --KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI +
Sbjct: 81 SSKDIDEVLQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESESH 140
Query: 118 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYVRQKR 167
Y EF+K +A+ ER+EA G K E + TPL++Y+ K+
Sbjct: 141 YQEFIKRLAQ------------EREEASRVGDVKIDFNFERRTEENVKSTPLLQYLANKK 188
>gi|388490053|ref|NP_001253666.1| regulator of nonsense transcripts 3B [Macaca mulatta]
gi|387539430|gb|AFJ70342.1| regulator of nonsense transcripts 3B isoform 2 [Macaca mulatta]
Length = 470
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|12711674|ref|NP_075386.1| regulator of nonsense transcripts 3B isoform 2 [Homo sapiens]
gi|397469623|ref|XP_003806445.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Pan
paniscus]
gi|426397254|ref|XP_004064838.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Gorilla
gorilla gorilla]
gi|12232324|gb|AAG48511.1| hUPF3B [Homo sapiens]
gi|119610251|gb|EAW89845.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_c [Homo sapiens]
gi|119610252|gb|EAW89846.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_c [Homo sapiens]
Length = 470
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|410947764|ref|XP_003980612.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3A [Felis catus]
Length = 570
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTADFSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K + + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKXKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L ++ +E + TPL+EY+R ++
Sbjct: 186 VEEEKTNANPETLL----GDMEAKTRELIARRTTPLLEYIRNRK 225
>gi|338729627|ref|XP_001915031.2| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B-like [Equus caballus]
Length = 534
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 103 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 158
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 159 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 218
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 219 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 260
>gi|111307687|gb|AAI21018.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Homo
sapiens]
Length = 470
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|441674950|ref|XP_004092554.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Nomascus leucogenys]
Length = 483
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|402911263|ref|XP_003918256.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Papio
anubis]
Length = 470
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|451992492|gb|EMD84975.1| hypothetical protein COCHEDRAFT_1064154, partial [Cochliobolus
heterostrophus C5]
Length = 617
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 22/179 (12%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSR 55
K P R K++ R LPP L++++ + D + R +W +R GK S K + +R
Sbjct: 27 KPPQPRLKLICRRLPPGLAKHEFAQVLGDDWKLGAGRIDWLSYRKGKISTDAAKPSKPAR 86
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSRE 109
AY+ + KP V + + F + K Q +V EYAP ++P R D+R+
Sbjct: 87 AYLHVTKPEHVKALGDHVRTLSFHDAAKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQ 146
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
GTI +D ++ +FL+ + P P+ E S APK+ + TPL+E +R+K+A
Sbjct: 147 GTIDQDQEFKDFLESLTNPITKPPAPE----------SEAPKDKVKTTPLIEALREKKA 195
>gi|295665137|ref|XP_002793120.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278641|gb|EEH34207.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 592
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L+ + A D + N + +W FR GK S K + +R Y+ +
Sbjct: 37 RLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRAKPSKPTRVYLRV 96
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
V E +E + F + + ++ EYAP RVP RKD R+GTI
Sbjct: 97 TSTPLVEELSEKVRQSSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRKDGRQGTIDL 156
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
D D++ FL+ + P + +I E + E S +TPL++++R+K+A
Sbjct: 157 DSDFIAFLESLTNPVTKT-TMDISAEDAKEEKS-------TITPLIQFLREKKA 202
>gi|242209718|ref|XP_002470705.1| predicted protein [Postia placenta Mad-698-R]
gi|220730282|gb|EED84142.1| predicted protein [Postia placenta Mad-698-R]
Length = 479
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF-NDRYNWFCFRPGKSSY---KHQRYSRAY 57
K+ +R K V+R LPP+L +N D W + GKS K SRAY
Sbjct: 31 KQQTERLKTVVRRLPPNLPENIFWQSVEPWVREDTVTWKAYYLGKSKKRLNKENISSRAY 90
Query: 58 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPD 117
+ K + F++ +GHVF ++ G + A+VE+AP Q+VP + D+R GTI KD +
Sbjct: 91 IAFKNEDVLATFSKEYDGHVFRDKAGNESIAVVEFAPYQKVPSDKKKVDTRMGTIEKDEE 150
Query: 118 YLEFLKVI 125
Y+ FL+ +
Sbjct: 151 YISFLESL 158
>gi|402911265|ref|XP_003918257.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Papio
anubis]
Length = 483
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|395848846|ref|XP_003797053.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Otolemur
garnettii]
Length = 470
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ +
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFRNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|321260903|ref|XP_003195171.1| hypothetical protein CGB_G2380W [Cryptococcus gattii WM276]
gi|317461644|gb|ADV23384.1| Hypothetical protein CGB_G2380W [Cryptococcus gattii WM276]
Length = 416
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 29/162 (17%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGK---SSYKHQR-YSRAYVELKKP 63
K+VIR LPP+L ++ D+ W F GK S+Y + YSRAYV + P
Sbjct: 13 KLVIRRLPPTLPEDIFWQSVSTWITDKTCLWKSFVKGKAGDSNYDSRPVYSRAYVLMADP 72
Query: 64 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPDYLEFL 122
+ F A+F+A+VEYAP Q+ P K + D+R+GTI +DPDYL F+
Sbjct: 73 ESLVNFHR------------AEFQAVVEYAPFQKTPLKTKVKVDNRQGTIDEDPDYLSFM 120
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 164
+ + P P+ E+ AP TPL+E++R
Sbjct: 121 ESLNAPVTK-PALEV----------AAPVTQPTTTPLLEHLR 151
>gi|74008224|ref|XP_864470.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Canis
lupus familiaris]
Length = 468
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|74008230|ref|XP_851843.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Canis
lupus familiaris]
Length = 481
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|417401480|gb|JAA47625.1| Putative nonsense-mediated decay protein upf3 [Desmodus rotundus]
Length = 469
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|431921495|gb|ELK18861.1| Regulator of nonsense transcripts 3B [Pteropus alecto]
Length = 479
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
A E + S E LE E+ +E + TPL+ +++ K
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNK 207
>gi|417401726|gb|JAA47733.1| Putative nonsense-mediated decay protein upf3 [Desmodus rotundus]
Length = 482
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|378732821|gb|EHY59280.1| hypothetical protein HMPREF1120_07272 [Exophiala dermatitidis
NIH/UT8656]
Length = 767
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 19/174 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSR 55
+ P R ++VIR LPP L++++ A D + + W F+ GK S K R SR
Sbjct: 34 RAPAPRLRLVIRRLPPGLTESEFWAALGDDWKVGAGKAEWAAFKSGKISKDLAKPSRPSR 93
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AY+++++ + + + + G F + K + E+AP ++P +R D R+
Sbjct: 94 AYIKVREQSLLDVLSAAVRGASFQDAKNTSKDPCLLGPPSLEFAPYNKIPSGRARNDGRQ 153
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
GTI +D ++++FL+ + +P S LE EA+ E + +TPL++Y+
Sbjct: 154 GTIDQDQEFIDFLQSLTQPITK--STTSVLEPGEAK-----PEKVAITPLVQYI 200
>gi|340517692|gb|EGR47935.1| predicted protein [Trichoderma reesei QM6a]
Length = 632
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 22/220 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYS 54
+ P + KV+IR LPP L++ + L++ + N + +WF + GK S K R +
Sbjct: 42 TRAPQEGEKVIIRRLPPGLTEAECLSILGPEWAVGNGKVDWFSYAVGKVSNELSKPSRPA 101
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDS 107
RAY+ L + + ++ + + + K + F + ++E A ++VP R D+
Sbjct: 102 RAYIHLMRKEYIMPLSDFVRNATWEDAK-STFTSPSLIGPPVLEIAIYKKVPGNKKRVDA 160
Query: 108 REGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV-VTPLMEYVRQK 166
R+GTI +DP+++ FL+ +A PA E E + P ET V TPL+EY+++K
Sbjct: 161 RQGTIDQDPEFMAFLEGLANPAP-------PRESNENDDVEEPAETKVTTTPLIEYLKEK 213
Query: 167 RAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKK 206
+A ++ + + R+ A+++ S++ GS+KK
Sbjct: 214 KANKAKEAAAAKSAKHARQQEASASKGKSASKDDEGSKKK 253
>gi|410989267|ref|XP_004000884.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Felis
catus]
Length = 472
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|406702092|gb|EKD05159.1| hypothetical protein A1Q2_00545 [Trichosporon asahii var. asahii
CBS 8904]
Length = 375
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCF---RPGKSSYKHQRYSRAYV 58
K P R K+V+R LPP+L + ++ + + W + RPG + H +SRAYV
Sbjct: 4 KAPAPRLKLVVRRLPPTLPEATFWSVV-EPWTSGALWKRYVQGRPGDNFGAHPVHSRAYV 62
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPD 117
+ A + F +GH+F ++ G +F+A+VE+AP ++ P + +KD+++GTI D D
Sbjct: 63 LMPDVASIVAFHTAFDGHLFRSKTGQEFQAVVEFAPVEKTPYRVKEKKDAKQGTI--DND 120
Query: 118 YLEFL 122
YL FL
Sbjct: 121 YLSFL 125
>gi|401888523|gb|EJT52479.1| hypothetical protein A1Q1_03995 [Trichosporon asahii var. asahii
CBS 2479]
Length = 374
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCF---RPGKSSYKHQRYSRAYV 58
K P R K+V+R LPP+L + ++ + + W + RPG + H +SRAYV
Sbjct: 4 KAPAPRLKLVVRRLPPTLPEATFWSVV-EPWTSGALWKRYVQGRPGDNFGAHPVHSRAYV 62
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPD 117
+ A + F +GH+F ++ G +F+A+VE+AP ++ P + +KD+++GTI D D
Sbjct: 63 LMPDVASIVAFHTAFDGHLFRSKTGQEFQAVVEFAPVEKTPYRVKEKKDAKQGTI--DND 120
Query: 118 YLEFL 122
YL FL
Sbjct: 121 YLSFL 125
>gi|395848848|ref|XP_003797054.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Otolemur
garnettii]
Length = 483
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ +
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFRNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|403279151|ref|XP_003931128.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|348515441|ref|XP_003445248.1| PREDICTED: regulator of nonsense transcripts 3B-like [Oreochromis
niloticus]
Length = 464
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPPSL++ +L + Y F F S Y H ++RAY+ K +
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPLPEVDYLEF-FSNDTSLYPHL-FARAYINFKNQEDIV 93
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VF++ +G ++ AIVE+AP Q+ K S+K + GTI +DPDY +FL+
Sbjct: 94 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKTAKKRSKKKDAKCGTIVEDPDYKKFLEYYN 153
Query: 127 KPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E L S E LE E+ KE + TPL+++++ K+
Sbjct: 154 GDDEKLTSTPETLLE----EIEAKSKELVAKKTTPLLDFLKNKQ 193
>gi|242803385|ref|XP_002484163.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|242803390|ref|XP_002484164.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717508|gb|EED16929.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717509|gb|EED16930.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 579
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSR 55
K P R K++IR LPP L+Q + D + + +WF F+ GK S K R +R
Sbjct: 31 KVPAPRLKLIIRRLPPGLTQAEFETGLGDDWKVGRGKIDWFQFKSGKISKDPAKPSRPAR 90
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSRE 109
AYV + + +E + F + + + VE+AP RVP SRKD R+
Sbjct: 91 AYVHVLSEEIIASLSEKVRATSFHDARNTSNDPVLLGPPSVEFAPYARVPGSRSRKDGRQ 150
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
GTI +DP+++ FL+ + P + E E +E + +TPL++Y+++K+A+
Sbjct: 151 GTIDQDPEFVAFLESLTNPI-------TKPGPVEGETEKKEEEEITITPLVQYIKEKKAS 203
Query: 170 ES 171
++
Sbjct: 204 KA 205
>gi|226293588|gb|EEH49008.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 591
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L+ + A D + N + +W FR GK S K + +R Y+ +
Sbjct: 37 RLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRAKPSKPTRVYLRV 96
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
V E +E + F + + ++ EYAP RVP RKD R+GTI
Sbjct: 97 TSTPLVEELSEKVRQLSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRKDGRQGTIDL 156
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
D D++ FL+ + P + +I E + E S +TPL++++R+K+A
Sbjct: 157 DSDFIAFLESLTNPVTKT-TVDISAEDAKEEKS-------TITPLIQFLREKKA 202
>gi|328773377|gb|EGF83414.1| hypothetical protein BATDEDRAFT_84963 [Batrachochytrium
dendrobatidis JAM81]
Length = 510
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQR---YSRAYVEL 60
P RTK+V+R LPP+L ++ D +W + GK + K + +SRAY+
Sbjct: 56 PKLRTKIVVRRLPPTLPRDAFFNTISKWL-DYIDWSEYVSGKLAKKLAKQNVFSRAYLNF 114
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
V +F + NGH+FV+ KG + +A+VE+AP QR K D T+ D DY
Sbjct: 115 IDCDSVLDFFKSCNGHLFVDSKGNEHRAVVEFAPFQRFCKQRKTIDPLVNTLDADADYQA 174
Query: 121 FLK 123
FL+
Sbjct: 175 FLQ 177
>gi|255637185|gb|ACU18923.1| unknown [Glycine max]
Length = 72
Score = 78.2 bits (191), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 53 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREG 110
+SRAY++ K P VFEF E +GHVFV+E+GAQ+K IVEYAPSQ VPKP ++K +G
Sbjct: 2 HSRAYIDFKCPDDVFEFTEFFDGHVFVSERGAQYKVIVEYAPSQCVPKPSAKKMDVKG 59
>gi|403279153|ref|XP_003931129.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 483
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|410989269|ref|XP_004000885.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Felis
catus]
Length = 485
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|297694522|ref|XP_002824527.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Pongo
abelii]
Length = 476
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F E +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL+
Sbjct: 126 LFRERFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L E+ +E + TPL+EY++ ++
Sbjct: 186 VEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|311276863|ref|XP_003135388.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Sus
scrofa]
Length = 470
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|311276861|ref|XP_003135389.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Sus
scrofa]
Length = 483
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|149599397|ref|XP_001506340.1| PREDICTED: regulator of nonsense transcripts 3A-like, partial
[Ornithorhynchus anatinus]
Length = 379
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 8/162 (4%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVIR LPP+L++ L H +++F F S Y+RAY+ + P +
Sbjct: 14 QVVIRRLPPTLTKEQLEEQL--HPLPAHDYFEFCAADPSLYPHLYTRAYINFRNPDDILL 71
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAK 127
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + GTI +DP+Y +FL+
Sbjct: 72 FRDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGTIEEDPEYRKFLETYCV 131
Query: 128 PAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + L E+ +E + TPL+EY+R ++
Sbjct: 132 DEEKISANPETL---LGEIEAKTRELIARRTTPLLEYIRSRK 170
>gi|440913116|gb|ELR62611.1| Regulator of nonsense transcripts 3B [Bos grunniens mutus]
Length = 483
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|426257651|ref|XP_004022438.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Ovis
aries]
Length = 470
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|432111537|gb|ELK34655.1| Regulator of nonsense transcripts 3B [Myotis davidii]
Length = 483
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|326483654|gb|EGE07664.1| nonsense-mediated mRNA decay protein [Trichophyton equinum CBS
127.97]
Length = 508
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+ +R LPP L+Q + + D++ + +WF F+ GK S K R RAY+ +
Sbjct: 43 RLKLHVRRLPPGLTQAEFETVLGDYWKVGRGKVDWFLFKEGKVSTDPSKPSRPGRAYLRV 102
Query: 61 KKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
+ E ++++ F N+ +EYAP RVP R D+R GTI +
Sbjct: 103 TSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTIDQ 162
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
D +++ FL+ + P PS E +E + E +TPL++Y+R+
Sbjct: 163 DAEFIAFLESLTNPVTK-PSEEETVEAADKV------EKPTITPLIQYLRE 206
>gi|426257649|ref|XP_004022437.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Ovis
aries]
Length = 483
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|195586209|ref|XP_002082870.1| GD24999 [Drosophila simulans]
gi|194194879|gb|EDX08455.1| GD24999 [Drosophila simulans]
Length = 494
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 37/180 (20%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSYKHQRYSRAYVEL 60
Q K+V+RHLPP++++ A F D ND Y ++C +P S + RAY+++
Sbjct: 28 QVVKIVMRHLPPTMTE----AQFLDQVGPLPENDSY-YYC-KPD-WSLGQEATCRAYIDM 80
Query: 61 --KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 117
K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI +
Sbjct: 81 SSKDIDEVLQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESESH 140
Query: 118 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYVRQKR 167
Y EF+K +A+ ER+EA G K E + TPL++Y+ K+
Sbjct: 141 YQEFIKRLAQ------------EREEASRVGDVKIDFNFERRTEENVKSTPLLQYLANKK 188
>gi|85081441|ref|XP_956721.1| hypothetical protein NCU03435 [Neurospora crassa OR74A]
gi|9368552|emb|CAB98213.1| related to nucleolar phosphoprotein [Neurospora crassa]
gi|28917796|gb|EAA27485.1| predicted protein [Neurospora crassa OR74A]
Length = 822
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
KVV+R LPP L++ + + D + + + +WF + PGKSS Q+ + G
Sbjct: 37 KVVVRRLPPLLTEEEFFKILGDEWKVGHGKVDWFSYWPGKSS--QQKDDLLVLSQAVQNG 94
Query: 66 VFEFA-ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
V+E A E N V VE + +++P R D+R+GTI ++P+++ FL+
Sbjct: 95 VWEDAKESYNDPVL------NLPPTVELSIHKKIPSDKKRVDNRQGTIDQEPEFMAFLES 148
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+A P + + + E E S P E + TPL+EY+++K+A
Sbjct: 149 LANPDAHK-TTDTAGEPNAEETSAKP-EKVTTTPLVEYLKEKKA 190
>gi|444515324|gb|ELV10830.1| Regulator of nonsense transcripts 3B [Tupaia chinensis]
Length = 606
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHVYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
A E + S E LE E+ +E + TPL+ +++ K
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNK 207
>gi|367034768|ref|XP_003666666.1| hypothetical protein MYCTH_2311559 [Myceliophthora thermophila ATCC
42464]
gi|347013939|gb|AEO61421.1| hypothetical protein MYCTH_2311559 [Myceliophthora thermophila ATCC
42464]
Length = 722
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVE 59
Q KVV+R LPP +++++ + + D + + +WF + PGK S K R SRAY+
Sbjct: 37 QGEKVVVRRLPPGMTEDEFVTILGDEWKVGGPKVDWFSYWPGKVSRHPSKPSRPSRAYLH 96
Query: 60 LKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 113
+ + + + + + N+ VE+A +++P R D R+GTI
Sbjct: 97 VIRRDDLTALLQRVQTATWEDAKETYNDPALLSLPTVEFAAYKKIPGDKKRVDGRQGTID 156
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
+DP+++ FL+ +A P + P E+Q AE A E + TPL+EY+
Sbjct: 157 QDPEFMAFLEALANP--DAPK-EVQEVEPPAE-DPAKAEKTMTTPLVEYL 202
>gi|67516447|ref|XP_658109.1| hypothetical protein AN0505.2 [Aspergillus nidulans FGSC A4]
gi|40747448|gb|EAA66604.1| hypothetical protein AN0505.2 [Aspergillus nidulans FGSC A4]
gi|259489240|tpe|CBF89348.1| TPA: nonsense-mediated mRNA decay protein Upf3, putative
(AFU_orthologue; AFUA_6G11460) [Aspergillus nidulans
FGSC A4]
Length = 590
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSYKH--------QRYSR 55
R K+++R LPP L+Q + + R +W ++PGK S H R SR
Sbjct: 37 RLKLLVRRLPPGLTQEEFETALGAEWKLGAGRVSWAQYKPGKVSKDHGNHSPAKPSRPSR 96
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
AY+ + + ++ + F++ + ++ E+AP ++P RKD+R
Sbjct: 97 AYLYVVSSEHIAPLSDKVRSTSFLDARNTANDPVLLGPPNLEFAPYAKIPGSRVRKDARL 156
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
GTI +DP++++FL+ + +P AE E ++ KET+ TPL++Y+
Sbjct: 157 GTIDQDPEFIQFLESLTQPITKPTLAETSAEGEDK------KETVTTTPLVQYI 204
>gi|296814244|ref|XP_002847459.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238840484|gb|EEQ30146.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 575
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 53/263 (20%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGK---------SSY---KHQ 51
R K+ +R LPP L+Q + + DH+ + +WF F+ GK +SY K
Sbjct: 42 RLKLHVRRLPPGLTQVEFESALGDHWKAGRGKIDWFLFKEGKVSSESVFQLNSYDPSKPS 101
Query: 52 RYSRAYVELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRK 105
R RAY+ + + E ++++ F N+ +EYAP RVP R
Sbjct: 102 RPGRAYLRINSSVTIPELSDVIRQTSFQDARNTYNDPALLGPPTLEYAPFSRVPSGKVRN 161
Query: 106 DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV-- 163
D+R GTI +D +++ FL+ + P PS E E E E +TPL++Y+
Sbjct: 162 DARVGTIDQDAEFIAFLESLTNPVTK-PSDEETTESAEKA------EKPTITPLIQYLKE 214
Query: 164 ---------------RQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKY 208
+Q R+A A+ES A +G++ + A K S +KK
Sbjct: 215 KKANKAKEAAAAKSSKQSRSA--AAKESKAEKSIGKKQLLSRADKPVSE-----KQKKDK 267
Query: 209 ILKDSA-KNARRKDKSTFTVVAK 230
KD+A K+AR++++ + + K
Sbjct: 268 ATKDAAVKDARKRERGSLSAATK 290
>gi|336468834|gb|EGO56997.1| hypothetical protein NEUTE1DRAFT_65951 [Neurospora tetrasperma FGSC
2508]
gi|350288875|gb|EGZ70100.1| hypothetical protein NEUTE2DRAFT_91209 [Neurospora tetrasperma FGSC
2509]
Length = 814
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
KVV+R LPP L++ + + D + + + +WF + PGKSS Q+ + G
Sbjct: 38 KVVVRRLPPLLTEEEFFKILGDEWKVGHGKVDWFSYWPGKSS--QQKDDLLVLSQAVQNG 95
Query: 66 VFEFA-ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 124
V+E A E N V VE + +++P R D+R+GTI ++P+++ FL+
Sbjct: 96 VWEDAKESYNDPVL------NLPPTVELSIHKKIPSDKKRLDNRQGTIDQEPEFMAFLES 149
Query: 125 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
+A P + + + E E S P E + TPL+EY+++K+A
Sbjct: 150 LANPDAHK-TTDTAGEPNAEETSAKP-EKVTTTPLVEYLKEKKA 191
>gi|116200009|ref|XP_001225816.1| hypothetical protein CHGG_08160 [Chaetomium globosum CBS 148.51]
gi|88179439|gb|EAQ86907.1| hypothetical protein CHGG_08160 [Chaetomium globosum CBS 148.51]
Length = 654
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 34/186 (18%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYS 54
K P Q KVV+R LPP++++ + + + + + + +WF + PGK S K + S
Sbjct: 29 TKAPAQGEKVVVRRLPPAMTEEEFITILGEEWKVGRGKVDWFSYWPGKVSQHPSKPSQPS 88
Query: 55 RAYVELKKPAGVFEFAELLNGHV----------FVNEKGAQFKAIVEYAPSQRVPKPFSR 104
RAY+ + + E LL HV N+ VE+A ++ P R
Sbjct: 89 RAYIHVTR---RDELVALLQ-HVQSATWEDAKETYNDPALVSPPTVEFATYKKTPGEKKR 144
Query: 105 KDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEA-----ELSGAPKETLVVTPL 159
D R+GTI +DP+++ FL+ +A P + Q E +E EL K T TPL
Sbjct: 145 VDGRQGTIDQDPEFMAFLEALANP-------DAQKEAQEGDQGVEELGKTEKTT--TTPL 195
Query: 160 MEYVRQ 165
+EY+++
Sbjct: 196 VEYLKE 201
>gi|449276361|gb|EMC84924.1| Regulator of nonsense transcripts 3A, partial [Columba livia]
Length = 381
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVIR LPP L++ L H +++F F S YSRAY+ + P +
Sbjct: 1 QVVIRRLPPCLTKEQLEEQL--HPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILL 58
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAK 127
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 59 FRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDTKAGSIEDDPEYRKFLESYCA 118
Query: 128 PAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + EI L E+ +E + TPL+EY++ ++
Sbjct: 119 DEEKICANPEILL----GEIEAKTRELIARRTTPLLEYIKNRK 157
>gi|225680260|gb|EEH18544.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 612
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L+ + A D + N + +W FR GK S K + +R Y+ +
Sbjct: 37 RLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRAKPSKPTRVYLRV 96
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFK 114
V E +E + F + + ++ EYAP RVP R+D R+GTI
Sbjct: 97 TSTPLVEELSEKVRQSSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRQDGRQGTIDL 156
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
D D++ FL+ + P + +I E + E S +TPL++++R+K+A
Sbjct: 157 DSDFIAFLESLTNPVTKT-TVDISAEDAKEEKS-------TITPLIQFLREKKA 202
>gi|345559857|gb|EGX42988.1| hypothetical protein AOL_s00215g774 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 43/196 (21%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSY---KHQRYSRAYVELKKPA 64
K+VIRHLP S+++ + L D N D W F PGK K +S A+ +
Sbjct: 51 KIVIRHLPASMTEQEYNVLTADVINKDTVEWSSFIPGKVPQDRNKPTTFSIAHARARSTE 110
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP--KPFSRKDSREGTIFKDPDYLEFL 122
+ + LNG + +G ++ VE+AP Q+ P K R D+R GTI DPD++ FL
Sbjct: 111 TLIQIKAGLNGKPLTDSRGQEYAVQVEFAPFQKFPQQKGRLRHDARSGTIDNDPDFIFFL 170
Query: 123 ----------------------------KVIAKP-AENLPSAEIQLERKEAELSGAPKET 153
KV P A +PS E + P
Sbjct: 171 ENLKHTGPNASSSAKTEGDGDKSKEKETKVYKDPLAAPVPSYEAPIME--------PGSK 222
Query: 154 LVVTPLMEYVRQKRAA 169
+ TPL+E+++Q++ A
Sbjct: 223 VTTTPLVEFIKQQKLA 238
>gi|402902529|ref|XP_003914153.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Papio
anubis]
Length = 463
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+ +
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYS 185
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + L E+ +E + TPL+EY++ ++
Sbjct: 186 VEEEKTSANPETL---LGEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|426376075|ref|XP_004054834.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Gorilla
gorilla gorilla]
Length = 476
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L E+ +E + TPL+EY++ ++
Sbjct: 186 VEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|397524434|ref|XP_003832196.1| PREDICTED: regulator of nonsense transcripts 3A [Pan paniscus]
Length = 576
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 168 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 225
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVI- 125
F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL+
Sbjct: 226 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYW 285
Query: 126 ---AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
K + N + ++E K EL TPL+EY++ ++
Sbjct: 286 VEEEKTSANPETLLGEMEAKTRELI-----ARRTTPLLEYIKNRK 325
>gi|432094447|gb|ELK26013.1| Regulator of nonsense transcripts 3A [Myotis davidii]
Length = 665
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 12/163 (7%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEF 69
VVIR LPPSL++ L H +++F F G S YSRAY+ + P + F
Sbjct: 254 VVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTGDLSLYPHLYSRAYINFRNPDDILLF 311
Query: 70 AELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA-- 126
+ +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 312 RDRFDGYIFIDNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIDDDPEYKKFLETYCVE 371
Query: 127 --KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
K + N + +E K EL TPL+EY++ ++
Sbjct: 372 EEKTSANPETLLGDIEAKTRELIAR-----RTTPLLEYIKNRK 409
>gi|12711676|ref|NP_075387.1| regulator of nonsense transcripts 3A isoform hUpf3p [Homo sapiens]
gi|60390646|sp|Q9H1J1.1|REN3A_HUMAN RecName: Full=Regulator of nonsense transcripts 3A; AltName:
Full=Nonsense mRNA reducing factor 3A; AltName:
Full=Up-frameshift suppressor 3 homolog A; Short=hUpf3
gi|12232322|gb|AAG48510.1| hUPF3A [Homo sapiens]
gi|119629653|gb|EAX09248.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_b [Homo sapiens]
Length = 476
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L E+ +E + TPL+EY++ ++
Sbjct: 186 VEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|355727800|gb|AES09314.1| UPF3 regulator of nonsense transcripts-like protein A [Mustela
putorius furo]
Length = 396
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L A + Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEAQLQPLPAHDYFEF-FTADLSLYPHL-YSRAYINFRDPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ G ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFIDSTGLEYPAVVEFAPFQKIAKKKIKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 ----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
KP N + +E K EL TPL+EY+R ++
Sbjct: 186 VEEEKPNANPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 225
>gi|193610839|ref|XP_001942591.1| PREDICTED: hypothetical protein LOC100159460 [Acyrthosiphon pisum]
Length = 446
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 28/190 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----RYNWFCFRPGKSSYKHQRYSRAYVELKKP 63
KVV+R LPP++++ L N+ +N+ F PG +SR Y+ K
Sbjct: 41 KVVVRRLPPTMTEERFL-------NEVSPLPEFNYMYFIPGDLHAVPFHHSRVYINFLKE 93
Query: 64 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLK 123
++ F + +G+VFV++ G ++ A VE AP QR+PK KD+ G I ++P +LEF +
Sbjct: 94 DDMYMFTDKFDGYVFVDDTGDEYPATVELAPYQRIPKKKLDKDANWGKIHENPVFLEFKR 153
Query: 124 VIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPLMEYVRQKRAAESGAQESLA 178
N I K + + +E + TPL+EY+ A ++ Q
Sbjct: 154 -------NFEQKTIDTTLKTTQHFFESVEDKSQEQDLSTPLLEYL----AKQNDKQRVRV 202
Query: 179 VGRVGRRSRA 188
R RR +
Sbjct: 203 NQRDERRKKV 212
>gi|67971906|dbj|BAE02295.1| unnamed protein product [Macaca fascicularis]
Length = 459
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L E+ +E + TPL+EY++ ++
Sbjct: 186 VEEEKTSTNPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|169862567|ref|XP_001837910.1| hypothetical protein CC1G_10331 [Coprinopsis cinerea okayama7#130]
gi|116501031|gb|EAU83926.1| hypothetical protein CC1G_10331 [Coprinopsis cinerea okayama7#130]
Length = 602
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSYKHQRY---SRAYVELK 61
+R K V+R LPP+L ++ + + W + PGK + + SRAY+ K
Sbjct: 33 ERLKTVVRRLPPNLPEDIFWQTVKPWVTEETATWKVYYPGKFKKRDNKENIPSRAYIAFK 92
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
+ F+ +GH+F ++ G + AIVE+AP Q+VP + D++ TI KD DY+ F
Sbjct: 93 NEELLATFSREFDGHLFKDKAGNESYAIVEFAPYQKVPSEKRKPDTKNATIEKDDDYISF 152
Query: 122 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGR 181
++ + A N I PK TPL+E ++ +++A+ +E++
Sbjct: 153 IESLNA-ATNTEPVTIDALLAATRPPSPPK----TTPLLEALKAEKSAQKD-KEAILRNH 206
Query: 182 VGRRSRAASASKTSSTTT 199
+ +A A+ T TT+
Sbjct: 207 AHYKDQANLAAVTGVTTS 224
>gi|12620406|gb|AAG60690.1|AF318575_1 UPF3 [Homo sapiens]
Length = 452
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 44 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 101
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL+
Sbjct: 102 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 161
Query: 127 KPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + E L E+ +E + TPL+EY++ ++
Sbjct: 162 VEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 201
>gi|115497252|ref|NP_001069879.1| regulator of nonsense transcripts 3B [Bos taurus]
gi|83405772|gb|AAI11354.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Bos
taurus]
gi|296471325|tpg|DAA13440.1| TPA: UPF3 regulator of nonsense transcripts homolog B [Bos taurus]
Length = 307
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|403170199|ref|XP_003329584.2| hypothetical protein PGTG_11334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168605|gb|EFP85165.2| hypothetical protein PGTG_11334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 490
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFR-------------DHFNDRYNWFCFRPGKS---SYK 49
+RTK+V+RHLPPSL + D + + PGK+ K
Sbjct: 3 ERTKLVVRHLPPSLPEEVFWKTLSRWLEPIPREDGTLDPPRCTATFKSYVPGKTRRNKTK 62
Query: 50 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 109
+ SRAY++ P V EF + F + G VE+AP Q+V P + DSR
Sbjct: 63 VEIPSRAYIQFATPDQVVEFHQGYASQAFRDSHGNVTFPKVEFAPYQKVAGPPKKIDSRI 122
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
GTI D DY FL + N P E + + + E +TPL+E++R R A
Sbjct: 123 GTIDTDHDYQAFLARL-----NAPVPEPNTNPDKPDEAPEKVERPEITPLIEHLRNARQA 177
Query: 170 ESGAQESLAVGRVGRRSRAASASKTSS 196
AQE+ + R +AA+++K++S
Sbjct: 178 ---AQEAALTAKQQR--QAATSAKSTS 199
>gi|313227796|emb|CBY22944.1| unnamed protein product [Oikopleura dioica]
Length = 322
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 6 QRTKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
Q+TKV IR LPP L++ +L L H ++F F +S +RAY++
Sbjct: 5 QQTKVTIRRLPPDLTEPELKEILGQLPPH-----DYFKFHKADASLAPAHTTRAYIKFVS 59
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
V EF + +G +F +++G ++ A +E A S +P+ R D GTI D D+ EF
Sbjct: 60 FEDVIEFRDNFDGRIFEDKRGHKYMAQIELAISSLIPRGKQRDDRHCGTIEDDEDFKEFK 119
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 164
+ + I+ KEA ++ + TPL+++VR
Sbjct: 120 EAYEADKPEVQQINIEEYLKEAAAKEEERKKPMTTPLIDFVR 161
>gi|296236280|ref|XP_002807957.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Callithrix jacchus]
Length = 478
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
+VVIR LPP+L++ L ++H +++F F +S Y+RAY+ K +
Sbjct: 50 QVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDI 105
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVI 125
F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 106 ILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKRKTKKRDTKVGTIDDDPEYRKFLESY 165
Query: 126 AKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 166 AMDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 206
>gi|156375215|ref|XP_001629977.1| predicted protein [Nematostella vectensis]
gi|156216989|gb|EDO37914.1| predicted protein [Nematostella vectensis]
Length = 105
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
KVVIR LPPSL + +L +++ D +++F F G+ S+ +SRAY+ K +
Sbjct: 1 KVVIRRLPPSLKEEEL----KEYLGDLPEHDFFYFVDGQMSFGPVLFSRAYINFKNQEDI 56
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
+F + +G F + KG ++ A+VEYAP Q VP+ +RKD++ GTI
Sbjct: 57 IKFRDQFDGSSFFDNKGKKYPAVVEYAPYQGVPRKKNRKDAKCGTI 102
>gi|432931218|ref|XP_004081608.1| PREDICTED: regulator of nonsense transcripts 3A-like [Oryzias
latipes]
Length = 462
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP+LS+ L + Y++F F S +SRAY+ K +
Sbjct: 45 SKVVIRRLPPNLSKEQLEEQLSPLPS--YDYFEFFSADQSLYPHLFSRAYINFKNTEDIV 102
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y FL+ +
Sbjct: 103 LFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFLENYS 162
Query: 127 KPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E ++ + E L E+ KE + TPL+EY++ K+
Sbjct: 163 CDEEKSMANPETLL----GEIEAKTKELIAKRTTPLLEYIKIKK 202
>gi|449546075|gb|EMD37045.1| hypothetical protein CERSUDRAFT_95309 [Ceriporiopsis subvermispora
B]
Length = 501
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSYKHQR---YSRAYVELKK 62
R K V+R LPP+L + + + W + GK + + SRAY+ K
Sbjct: 38 RFKTVVRRLPPNLPEEIFWQSVQKWVTEETIQWKIYYQGKFKTRMNKENIQSRAYIAFKN 97
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
+ F+ +GH+F ++ G + A+VE+AP Q++P + DSR GTI KD DY+ FL
Sbjct: 98 EEILATFSREYDGHLFRDKAGNESSAVVEFAPFQKIPSEKKKVDSRMGTIEKDEDYISFL 157
Query: 123 KVIAKPA 129
+ + PA
Sbjct: 158 ESLNNPA 164
>gi|327309448|ref|XP_003239415.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
gi|326459671|gb|EGD85124.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
Length = 604
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYV 58
+ R K+ +R LPP L+Q + D++ R +WF F+ GK S K R RAY+
Sbjct: 40 VPRLKLHVRRLPPGLTQAEFETTLGDYWKVGRGRVDWFLFKAGKVSTDPSKPSRPGRAYL 99
Query: 59 ELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
+ + E ++++ F N+ +EYAP RVP R D+R GTI
Sbjct: 100 RVTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTI 159
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
+D +++ FL+ + P PS E E + E +TPL++Y+
Sbjct: 160 DQDAEFISFLESLTNPVTK-PSEEETTEAADRV------EKQTITPLIQYL 203
>gi|165971526|gb|AAI58354.1| upf3b protein [Xenopus (Silurana) tropicalis]
Length = 231
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
+KVVIR LPPSL++ L L DH ++F F SS +SRAY+ K
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLFPHMFSRAYINFKSQD 91
Query: 65 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 123
+ F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y +FL
Sbjct: 92 DIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLD 151
Query: 124 VIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E L S E LE E+ KE + TPL+ +++ ++
Sbjct: 152 SYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLKNRQ 194
>gi|332264282|ref|XP_003281173.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Nomascus
leucogenys]
Length = 477
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR-----DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
+KVVIR LPP L++ L R D+F F S Y H YSRAY+ +
Sbjct: 69 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFE------IFAADLSLYPHL-YSRAYINFRN 121
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 121
P + F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +F
Sbjct: 122 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 181
Query: 122 LKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
L+ E + E L E+ +E + TPL+EY++ ++
Sbjct: 182 LETYCVEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 226
>gi|212539920|ref|XP_002150115.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
gi|210067414|gb|EEA21506.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
Length = 570
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++IR LPP L++ + D + + +WF F+PGK S K R +RAYV +
Sbjct: 33 RLKLIIRRLPPGLTRAEFETGLGDDWKIGRGKIDWFQFKPGKISKDPAKPSRPARAYVHV 92
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFK 114
+ +E + F + + + VE+AP RVP SRKD R+GTI +
Sbjct: 93 LSEEIISSLSEKVRATSFHDARNTSNDPVLLGPPSVEFAPFARVPGSRSRKDGRQGTIDQ 152
Query: 115 DPDYLEFLKVIAKP 128
DP+++ FL+ + P
Sbjct: 153 DPEFVAFLESLTNP 166
>gi|367054148|ref|XP_003657452.1| hypothetical protein THITE_2123179 [Thielavia terrestris NRRL 8126]
gi|347004718|gb|AEO71116.1| hypothetical protein THITE_2123179 [Thielavia terrestris NRRL 8126]
Length = 729
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYS 54
+K P+Q KVV+R LPP +++ + + + D + + R +WF + PGK S K R +
Sbjct: 29 VKAPMQGEKVVVRRLPPGMTEEEFVTILGDEWAVGHGRVDWFSYWPGKVSKHPSKPSRPA 88
Query: 55 RAYVELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSR 108
RAY+ + + + + + + + N+ VE+A +++P R D R
Sbjct: 89 RAYLHVTRRDLLTALLQTVQSNKWEDAKETYNDPALVSLPTVEFATYKKIPSGKKRVDGR 148
Query: 109 EGTIFKDPDYLEFLKVIAKPAEN 131
+GTI +DP+++ FL+ +A P N
Sbjct: 149 QGTIDQDPEFMAFLEGLANPDVN 171
>gi|41055672|ref|NP_957248.1| regulator of nonsense transcripts 3B [Danio rerio]
gi|33416419|gb|AAH55632.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Danio
rerio]
gi|240248227|emb|CAX18773.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Danio
rerio]
Length = 467
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPP+L++ DL + Y F F S + H ++RAY+ K +
Sbjct: 37 TKIVIRRLPPTLTKEDLEEQLQPLPELDYLEF-FSSDTSLFPHL-FARAYLNFKNQDDIV 94
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
F + +G+VF++ +G ++ AIVE+AP Q K +KD++ GTI D DY +FL+
Sbjct: 95 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKVAKKRSKKKDAKSGTIDDDADYKKFLEFYN 154
Query: 127 KPAENLPS-AEIQLERKEA---ELSGAPKETLVVTPLMEYVRQKR 167
E PS EI LE EA ELS + TPL+++++ K+
Sbjct: 155 GDEEKSPSNPEILLEEIEAKTKELS-----SKKTTPLLDFLKNKQ 194
>gi|302499969|ref|XP_003011979.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
gi|291175534|gb|EFE31339.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
Length = 604
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+ +R LPP L+Q + D + + +WF F+ GK S K R RAY+ +
Sbjct: 41 RLKLHVRRLPPGLTQAEFETTLGDFWKVGRGKVDWFLFKEGKVSTDPSKPSRPGRAYLRV 100
Query: 61 KKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
+ E ++++ F N+ +EYAP RVP R D+R GTI +
Sbjct: 101 TSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTIDQ 160
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
D +++ FL+ + P PS E E + E +TPL++Y+R+
Sbjct: 161 DAEFIAFLESLTNPVTK-PSEEETTEAADKV------EKPTITPLIQYLRE 204
>gi|258572902|ref|XP_002545213.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905483|gb|EEP79884.1| predicted protein [Uncinocarpus reesii 1704]
Length = 574
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 28/201 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK---------SSYKHQRYS 54
R K+++R LPP L+Q + + + +W ++ GK S K + S
Sbjct: 39 RLKLLVRRLPPGLTQAEFDVALGTEWALGKGKVDWLSYKHGKVSTDYHYTTSPSKPSKPS 98
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQF------KAIVEYAPSQRVPKPFSRKDSR 108
RAY+ + A V E ++ + G F + + A +EYAP R P RKD+R
Sbjct: 99 RAYLRVTSSAIVGELSDKIRGASFQDARNTASDPSLLGPATLEYAPYPRAPGAKVRKDAR 158
Query: 109 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
GTI +D +++ FL+ + P PS++ LE + +E + +TPL++++++K+A
Sbjct: 159 LGTIDQDSEFIAFLESLTNPVPK-PSSDDLLEPER-------EEKITITPLIQFLKEKKA 210
Query: 169 AESGAQESLAVGRVGRRSRAA 189
+ A+E+ R + SR A
Sbjct: 211 --NKAREASLPSRATKPSRPA 229
>gi|432877265|ref|XP_004073128.1| PREDICTED: regulator of nonsense transcripts 3B-like [Oryzias
latipes]
Length = 457
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPP+L++ +L + Y F F S Y H ++RAY+ + V
Sbjct: 36 TKIVIRRLPPTLTKEELEEQLQPLPEVDYLEF-FSNDTSLYPHL-FARAYINFRNEEDVV 93
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VFV+ KG +F AIVE+AP Q+ K +K + GTI +DPDY FL+
Sbjct: 94 LFRDRFDGYVFVDGKGQEFPAIVEFAPFQKTAKKRIKKKDSKCGTIAEDPDYKRFLEYYN 153
Query: 127 KPAENLPSA-EIQLERKEA---ELSGAPKETLVVTPLMEYVRQKR 167
L + E LE EA ELS TPL+++++ K+
Sbjct: 154 GDDNKLTTTPETLLEEVEARSKELSAK-----KTTPLLDFLKTKQ 193
>gi|111309183|gb|AAI21019.1| UPF3B protein [Homo sapiens]
Length = 218
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQESL 177
A E + S E LE E+ +E + TPL+ +++ K+ +E
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQRMREEKREDF 218
>gi|302661624|ref|XP_003022478.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
gi|291186424|gb|EFE41860.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
Length = 659
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+ +R LPP L+Q + D + + +WF F+ GK S K R RAY+ +
Sbjct: 95 RLKLHVRRLPPGLTQAEFETTLGDCWKVGRGKVDWFLFKEGKVSTDPSKPSRPGRAYLRV 154
Query: 61 KKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
+ E ++++ F N+ +EYAP RVP R D+R GTI +
Sbjct: 155 TSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTIDQ 214
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
D +++ FL+ + P PS E E + E +TPL++Y+R+
Sbjct: 215 DAEFIAFLESLTNPVTK-PSEEETTEAADKV------EKPTITPLIQYLRE 258
>gi|119610249|gb|EAW89843.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_b [Homo sapiens]
Length = 292
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|355754831|gb|EHH58732.1| Nonsense mRNA reducing factor 3A, partial [Macaca fascicularis]
Length = 408
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 1 QVVIRRLPPGLTKEQLEQQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDILL 58
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAK 127
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 59 FRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYCV 118
Query: 128 PAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + L E+ +E + TPL+EY++ ++
Sbjct: 119 EEEKTSTNPETL---LGEMEAKTRELIARRTTPLLEYIKNRK 157
>gi|440632753|gb|ELR02672.1| hypothetical protein GMDG_05626 [Geomyces destructans 20631-21]
Length = 467
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 32/222 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSY---KHQRYSRAYVELKK 62
KVV+R L P+L++ + + + D + R +WF ++PGK S K R SRAY+ L
Sbjct: 35 KVVVRRLAPALTETEFMKIIGDEWKVGAGRVDWFSYKPGKVSTDPSKASRPSRAYLHL-- 92
Query: 63 PAGVFE-FAELLNGHV--FVNEKGAQF--------KAIVEYAPSQRVPKPFSRKDSREGT 111
+ E + L+ HV E A+ A +EY R+P R D+R+GT
Sbjct: 93 ---INEPYLTQLSNHVRQLTFEDAAKTFTNPCLLGPASLEYTSYARIPSGKRRTDARQGT 149
Query: 112 IFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES 171
I DP++++FL+ +A P + E E G E + TPL++Y++ K+A +S
Sbjct: 150 IDLDPEFMDFLESLANPKST------KGEDTEPSTKG---EKVTTTPLVQYLKDKKANKS 200
Query: 172 GAQESLAVGRVGR-RSRAASASKTSSTTTKRGSEKKKYILKD 212
+ + R S+AASAS S + E K KD
Sbjct: 201 KEAAAAKAAKQSRLESQAASASGKSKSKEGAADEPHKKTPKD 242
>gi|380793431|gb|AFE68591.1| regulator of nonsense transcripts 3B isoform 1, partial [Macaca
mulatta]
Length = 228
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 166
Query: 125 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 167 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|226469914|emb|CAX70238.1| putative hUPF3A [Schistosoma japonicum]
gi|226488835|emb|CAX74767.1| putative hUPF3A [Schistosoma japonicum]
Length = 536
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 32/181 (17%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R LPP L ND + + + Y FC S +RAY+ +F+
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPLPSHTYFRFC--DADDSLGALGLTRAYIAFSDIDSLFD 65
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQ-----RVPKPFSRK---DSREGTIFKDPDYLE 120
F E +G++F++ +G + A+VE+A Q +VP +++ D ++G++ D +Y+E
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDSEYIE 125
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETL---------------VVTPLMEYVRQ 165
F+K ++ SAE+ E E+E + E++ +VTPL+ Y+
Sbjct: 126 FVK-------SMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLTYLNN 178
Query: 166 K 166
+
Sbjct: 179 R 179
>gi|296215016|ref|XP_002753967.1| PREDICTED: regulator of nonsense transcripts 3A-like [Callithrix
jacchus]
Length = 497
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVIR LPP L++ L H +++F F S YSRAY+ + P +
Sbjct: 95 QVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 152
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAK 127
F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 153 FRDRFDGYVFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYCV 212
Query: 128 PAENLPS-AEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
E + EI L EA+ A + L+EY++ ++
Sbjct: 213 EEEKTSTNPEILLGEMEAKTKRA--HARRINTLLEYIKNRK 251
>gi|58865890|ref|NP_001012159.1| regulator of nonsense transcripts 3A [Rattus norvegicus]
gi|56971889|gb|AAH88463.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Rattus
norvegicus]
gi|149057670|gb|EDM08913.1| rCG43312 [Rattus norvegicus]
Length = 405
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPP L++ L R +++F S YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+ +
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E S E L E+ +E L TPL+EY++ ++
Sbjct: 184 LEEEKTSASPETLL----GEIEAKTRELLARRTTPLLEYIKNRK 223
>gi|21313164|ref|NP_080200.1| UPF3 regulator of nonsense transcripts homolog A [Mus musculus]
gi|74211416|dbj|BAE26455.1| unnamed protein product [Mus musculus]
gi|109733918|gb|AAI16989.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Mus
musculus]
gi|111600742|gb|AAI19036.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Mus
musculus]
gi|148690220|gb|EDL22167.1| mCG3697, isoform CRA_c [Mus musculus]
Length = 422
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 20/169 (11%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR-----DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
+KVV+R LPP L++ L R D+F S Y H YSRAY+ +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPAHDYFE------VVAADLSLYPHV-YSRAYINFRN 118
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 121
P + F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +F
Sbjct: 119 PDDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQF 178
Query: 122 LKVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
L+ + E S E L E+ +E L TPL+EY++ ++
Sbjct: 179 LESYSLEEEKTSASPETLL----GEIEAKTRELLARRTTPLLEYIKNRK 223
>gi|395754367|ref|XP_003780778.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Pongo abelii]
Length = 357
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 16/165 (9%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
VVIR LPP+L++ L ++H +++F F +S Y+RAY+ K +
Sbjct: 118 VVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 173
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+ A
Sbjct: 174 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 233
Query: 127 KPAENLPSA-EIQLERKEA---ELSGAPKETLVVTPLMEYVRQKR 167
E + S E LE EA EL K+T TPL+ +++ K+
Sbjct: 234 TDNEKMTSTPETLLEEIEAKNRELIA--KKT---TPLLSFLKNKQ 273
>gi|194222085|ref|XP_001499122.2| PREDICTED: regulator of nonsense transcripts 3A-like [Equus
caballus]
Length = 432
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKP 63
P+ + VVIR LPPSL++ L H +++F F S YSRAY+ + P
Sbjct: 20 PICKGSVVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTADLSLFPHLYSRAYINFRNP 77
Query: 64 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 122
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I D +Y +FL
Sbjct: 78 EDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDAEYKKFL 137
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
+ E ++ L ++ +E + TPL+EY++ ++
Sbjct: 138 EAYCVEEEKAAASPETL---LGDIEAKTRELIARRTTPLLEYIKNRK 181
>gi|195431539|ref|XP_002063794.1| GK15858 [Drosophila willistoni]
gi|194159879|gb|EDW74780.1| GK15858 [Drosophila willistoni]
Length = 461
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 24/169 (14%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFN-----DRYNWFCFRPGKSSYKHQRYSRAYVEL--KK 62
+V+RHLPP++++ + L DH + D Y ++C P + + RAY+ + K
Sbjct: 15 IVVRHLPPTMTEKEFL----DHVDPLPEIDSY-YYC--PADWTLGQEASCRAYINMSTKN 67
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEF 121
V +F + +G+VF++ KG ++ AIVEYAP Q K +R D++ TI +P + EF
Sbjct: 68 IEEVLQFRDRFDGYVFLDAKGDEYVAIVEYAPFQCFAKNKARSHDNKVDTIESEPHFQEF 127
Query: 122 LKVIAKPAEN---LPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
++ + E L +I + + + + + TPL++Y+ K+
Sbjct: 128 VQKFIEDKEEASRLGDVKIDIAYDDTD------DEVQSTPLLQYLANKK 170
>gi|393244442|gb|EJD51954.1| hypothetical protein AURDEDRAFT_181525 [Auricularia delicata
TFB-10046 SS5]
Length = 392
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSS---YKHQRYSRAYVEL 60
+ R KVV+R LPP+L ++ + ND W F GK S K SRAY+
Sbjct: 10 VDRLKVVVRRLPPNLPEDVFWDSVKPWANDDTVQWRSFVAGKISKRTIKENVPSRAYITF 69
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 120
K V F+ +GH+F ++ G + A+VE+AP Q++P + D + T+ +D Y
Sbjct: 70 KTHESVAIFSREYDGHIFRDKSGRETAAVVEFAPYQKIPPTEVKPDKYKDTLLRDAHYTH 129
Query: 121 FL 122
+L
Sbjct: 130 WL 131
>gi|403180084|ref|XP_003338377.2| hypothetical protein PGTG_19888, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375165806|gb|EFP93958.2| hypothetical protein PGTG_19888, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 273
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 29/227 (12%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFR-------------DHFNDRYNWFCFRPGKS---SYK 49
+RTK+V+RHLPPSL + D + + PGK+ K
Sbjct: 3 ERTKLVVRHLPPSLPEEVFWKTLSRWLEPIPREDGTLDPPRCTATFKSYVPGKTRRNKTK 62
Query: 50 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 109
+ SRAY++ P V EF + F + G VE+AP Q+V P + DSR
Sbjct: 63 VEIPSRAYIQFATPDQVVEFHQGYASQAFRDSHGNVTFPKVEFAPYQKVAGPPKKIDSRI 122
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
GTI D DY FL + N P E + + + E +TPL+E++R R A
Sbjct: 123 GTIDTDHDYQAFLARL-----NAPVPEPSTNPDKPDEAPEKVERPEITPLIEHLRNARQA 177
Query: 170 ESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKN 216
AQE+ + R +AA+++K++S + G + I+K A N
Sbjct: 178 ---AQEAALTAKQQR--QAATSAKSTSGRSFAGPPQ---IMKRVATN 216
>gi|392590363|gb|EIW79692.1| hypothetical protein CONPUDRAFT_144892 [Coniophora puteana
RWD-64-598 SS2]
Length = 553
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGK---SSYKHQRYSRAYVELK 61
+R K V+R LP +L ++ + + W F GK K SRAY+ K
Sbjct: 47 ERMKAVVRRLPANLPEDIFWQSVQAWVTPETVAWRKFYAGKIHKRPNKESMPSRAYIAFK 106
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
V F+ +GHVF ++ G + +A+VE+AP Q+VP + D R GTI KD D++ F
Sbjct: 107 SDDLVATFSREYDGHVFRDKAGNESQAVVEFAPFQKVPAEKKKADPRAGTIEKDEDFISF 166
Query: 122 LKVI 125
LK +
Sbjct: 167 LKTL 170
>gi|134055711|emb|CAK44084.1| unnamed protein product [Aspergillus niger]
Length = 565
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYSRAYVELKKP 63
R K+++R LPP L+Q + + + +WF ++PGK S
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDDH------------ 86
Query: 64 AGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFKDPD 117
+ + F++ + + +E+AP ++ SRKD+R+GTI +DP+
Sbjct: 87 --TIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTIDQDPE 144
Query: 118 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
++ FL+ + +P E + ++ KET+ VTPL++Y+R+K+A
Sbjct: 145 FIAFLESLTQPLAKPAPVESGADGEDK------KETVTVTPLVQYIREKKA 189
>gi|380478534|emb|CCF43542.1| nonsense-mediated mRNA decay protein [Colletotrichum higginsianum]
Length = 653
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAY 57
P++ KV+IR LPP +++ +L D + N +W F GK S K R R Y
Sbjct: 37 PVEGDKVIIRRLPPGMTEQELWNNLGDEWKAGNGLVSWHNFAQGKISQDPAKPSRPGRVY 96
Query: 58 VELKKPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPFSRKDSREGT 111
+ + K + + L+ + + K ++E+A +VP R D R+GT
Sbjct: 97 LHVLKRESLNTLSTLIQAKSWEDAKMTSNSPSLVGPPVLEFAIYNKVPGGKKRTDPRQGT 156
Query: 112 IFKDPDYLEFLKVIAKPA---ENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
I +DP+++ FL + P EN S E K+AE S P+ + TPL+EY+++
Sbjct: 157 IDQDPEFMSFLLSLTNPEMDKENEGS-----ESKDAEES-KPEAKVTTTPLIEYIKE 207
>gi|406863684|gb|EKD16731.1| nonsense-mediated mRNA decay protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 589
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
+ K V+R L P L++++ ++ + + + +WF ++PGK S K + SRAY L
Sbjct: 35 KLKTVVRRLAPGLTEDEFTSVLGEEWKAGQGKVDWFLYKPGKESKDASKPSKPSRAYFHL 94
Query: 61 KKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 114
+ ++ + F N VE+AP R P R D+R GTI +
Sbjct: 95 TSETHLLSLSDHVRQSNFEDALNTFNSACLIGPPTVEFAPYGRTPAGRRRVDARAGTIDQ 154
Query: 115 DPDYLEFLKVIAKPAENLPSAEIQLERKEA------ELSGAPKETLVVTPLMEYVRQKRA 168
DP+++ FL+ +A P KEA +L A +E + +TPL++ ++ K+A
Sbjct: 155 DPEFMAFLEQLANPTTG----------KEANGDSQFDLGTAKQEKVTMTPLVQALKDKKA 204
>gi|71003399|ref|XP_756380.1| hypothetical protein UM00233.1 [Ustilago maydis 521]
gi|46095817|gb|EAK81050.1| hypothetical protein UM00233.1 [Ustilago maydis 521]
Length = 559
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 31/149 (20%)
Query: 49 KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV----PKPFSR 104
K +++RAYV + +F + +GH+F + +G + AIVE+AP Q+V P+ +R
Sbjct: 216 KQNKHARAYVRFLDAQMLVQFYKAFDGHIFRDSRGNESIAIVEFAPYQKVVVSTPRTGTR 275
Query: 105 K-------DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAEL-------SGAP 150
D+++GTI KD DY FL E L A+ Q++R E EL G
Sbjct: 276 GGPRAAKLDAQQGTIDKDADYQCFL-------ERLSKADDQVQRSEGELLASLLDSKGKE 328
Query: 151 KETLV------VTPLMEYVRQKRAAESGA 173
KET VTPL+ ++R+++ A+S A
Sbjct: 329 KETEARRLAGKVTPLLLHLREQKMAQSDA 357
>gi|240248225|emb|CAX18772.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Danio
rerio]
Length = 155
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPPSLS++ L ++H + +++F F P S +SRAY+ K P
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPED 98
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ 96
+ F + +G+VF++ KG ++ A+VE+AP Q
Sbjct: 99 IIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQ 129
>gi|351705030|gb|EHB07949.1| Regulator of nonsense transcripts 3B [Heterocephalus glaber]
Length = 242
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LP +L++ L ++H +++F F P +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPSTLTREQL----QEHLQPMPEHDYFEFFPNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 124
+ F + +G+VF++ KG ++ A+VE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 107 IILFRDRFDGYVFLDNKGQEYAAMVEFAPFQKAAKKKTKKRDTKVGTIGDDPEYRKFLES 166
Query: 125 IAKPAENLPS 134
A E + S
Sbjct: 167 YATDKEKMTS 176
>gi|19114617|ref|NP_593705.1| hypothetical protein SPAC13G7.03 [Schizosaccharomyces pombe 972h-]
gi|1723449|sp|Q10267.1|UPF3_SCHPO RecName: Full=Nonsense-mediated mRNA decay protein 3; AltName:
Full=Up-frameshift suppressor 3
gi|1204170|emb|CAA93591.1| up-frameshift suppressor 3 family protein (predicted)
[Schizosaccharomyces pombe]
Length = 278
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSY--KHQRYSRAYVELKKPAGV 66
KV++ +LPP+L + L + F W F GK++ + + S AY++ + V
Sbjct: 13 KVLVFNLPPTLPEQVFLQSI-NSFLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 71
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
EF + GH F+++K ++AIV AP Q++P + DS EG++ +DP + EF KV
Sbjct: 72 QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF-KVQR 130
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 169
+ S + +E+ + TPL++Y+ +K+ A
Sbjct: 131 ESYSQTASNDDVIEKLQTS-----------TPLLQYLAEKKNA 162
>gi|380791687|gb|AFE67719.1| regulator of nonsense transcripts 3A isoform hUpf3p, partial
[Macaca mulatta]
Length = 266
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 ----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 167
K + N + ++E K EL TPL+EY++ ++
Sbjct: 186 VEEEKTSANPETLLGEMEAKTRELIAR-----RTTPLLEYIKNRK 225
>gi|335310531|ref|XP_003362076.1| PREDICTED: regulator of nonsense transcripts 3A-like, partial [Sus
scrofa]
Length = 447
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPPSL++ L + Y F F S Y H YSRAY+ + P +
Sbjct: 116 SKVVVRRLPPSLTREQLEEQLQPLPAHDYFEF-FTADLSLYPH-LYSRAYINFRNPDDIL 173
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 174 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYKKFLETYC 233
Query: 127 KPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E A E ++ +E + TPL+EY++ ++
Sbjct: 234 VEEEK---ASANPETLLGDVEAKTRELIARRTTPLLEYIKNRK 273
>gi|310800307|gb|EFQ35200.1| smg-4/UPF3 family protein [Glomerella graminicola M1.001]
Length = 647
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAY 57
P++ KVVIR LPP +++ +L D + N +W F GK S K R R Y
Sbjct: 37 PVEGDKVVIRRLPPGMTEQELWNNLGDEWKAGNGLVSWHNFVQGKISQDPAKPSRPGRVY 96
Query: 58 VELKKPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPFSRKDSREGT 111
+ + K + + L+ + + K A ++E+A ++P R D R+GT
Sbjct: 97 LHVLKRESLNVLSNLIQAKSWEDAKMTSNSASLVGPPVLEFAIYNKIPSGKKRSDPRQGT 156
Query: 112 IFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAE----LSGAPKETLVVTPLMEYVRQ 165
I +DP+++ FL + P E++ E + +E P+ + TPL+E++++
Sbjct: 157 IDQDPEFMAFLLSLTNP-------EMERENENSEGKDTEDSKPEAKVTTTPLIEFIKE 207
>gi|327268038|ref|XP_003218805.1| PREDICTED: regulator of nonsense transcripts 3A-like [Anolis
carolinensis]
Length = 476
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 11 VIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFA 70
+IR LPPS ++ L H +++F F S YSRAY+ + P + F
Sbjct: 57 LIRRLPPSFTKEQLEEQL--HPLPAHDYFEFCTSDPSLYPHLYSRAYINFRNPDDILLFR 114
Query: 71 ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAKPA 129
+ +G VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 115 DRFDGFVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCAEE 174
Query: 130 ENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + L E+ +E + TPL+EY++ ++
Sbjct: 175 EKISANPETLL---GEIEAKTRELIARRTTPLLEYIKNRK 211
>gi|301616932|ref|XP_002937909.1| PREDICTED: regulator of nonsense transcripts 3A-like [Xenopus
(Silurana) tropicalis]
Length = 464
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP+L++ L H +++F F S +SRAY+ + P +
Sbjct: 49 SKVVIRRLPPNLNKEQLEEQL--HPLPAHDYFEFCTADPSLFPHLFSRAYINFRNPEDIL 106
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I +D +Y +FL+
Sbjct: 107 LFRDRFDGYIFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIAEDLEYKKFLENYC 166
Query: 127 KPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + + E L E+ KE + TPL+E+++ ++
Sbjct: 167 AEEEKVYANPETLL----GEIEAKTKELIARRTTPLLEFIKNRK 206
>gi|426194127|gb|EKV44059.1| hypothetical protein AGABI2DRAFT_187731 [Agaricus bisporus var.
bisporus H97]
Length = 479
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF-NDRYNWFCFRPGKSSYKHQRY---SRAYVE 59
P +R K+V+R LPP+L ++ + +D W + PGK + + SRAY+
Sbjct: 32 PGERLKIVVRRLPPNLPEDIFWQSVSNWVTDDTVMWKLYFPGKPKKRMNKENIPSRAYIA 91
Query: 60 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK----- 114
K + F+ +GH FV++ G + A+VE+AP Q+VP + DSR TI K
Sbjct: 92 FKDSEHLLFFSREYDGHKFVDKAGNESYAVVEFAPYQKVPGEKKKPDSRNATIEKGQALR 151
Query: 115 -------------DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLME 161
D DY+ F++ + N+ S + + S P TPL+E
Sbjct: 152 VRYAMFSISNAHLDEDYISFVESL-----NVQSNAEPVTIETLVASTRPASPPKTTPLLE 206
Query: 162 YVRQKRAAE 170
++ +R A+
Sbjct: 207 ALKAERQAQ 215
>gi|296411781|ref|XP_002835608.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629394|emb|CAZ79765.1| unnamed protein product [Tuber melanosporum]
Length = 615
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGK---SSYKHQRYSRAYVELKK 62
R KVV+RHLP + +++ ++ N+ W + GK K + SR ++ K
Sbjct: 33 RLKVVVRHLPSLIKEDEFKGAMAEYINEETVEWASWVQGKIPEERTKAPKDSRCVIKFKN 92
Query: 63 PAGVFEFAELLNGH-VFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
P + +E L H F + KG +EY+P Q+ PK R D+R GTI DPD++ F
Sbjct: 93 PLQITALSEGLRLHGPFTDSKGNTTNPQMEYSPFQKAPKRSVRIDARAGTIESDPDFIAF 152
Query: 122 L 122
+
Sbjct: 153 V 153
>gi|410056912|ref|XP_003954560.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B, partial [Pan troglodytes]
Length = 397
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 12 IRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEF 69
IR LPP+L++ L ++H +++F F +S Y+RAY+ K + F
Sbjct: 8 IRRLPPTLTKEPL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILF 63
Query: 70 AELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAKP 128
+ +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+ A
Sbjct: 64 RDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATD 123
Query: 129 AENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 124 NEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 161
>gi|346976552|gb|EGY20004.1| hypothetical protein VDAG_02020 [Verticillium dahliae VdLs.17]
Length = 673
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSR 55
K P++ KV+IR LPP +++ ++ + D + N +W F GK S K R R
Sbjct: 35 KTPVEGDKVIIRRLPPGMTEEEVWTILGDKWKAGNGLVDWSDFARGKVSQDPAKSSRPGR 94
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
Y+ +KK + E E++ + + K + EY +++P R D+R+
Sbjct: 95 LYLHVKKRESLAELDEIVQTRTWEDTKLTHNNPCLVGPPSLEYCIYKKIPGARKRSDARQ 154
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 165
GTI +DP+++ +L + P E + + P + TPL+EY+++
Sbjct: 155 GTIDQDPEFMSYLLSLTNPET---EKEGETGEDPSAGESKPDTKVTTTPLIEYIKE 207
>gi|403418915|emb|CCM05615.1| predicted protein [Fibroporia radiculosa]
Length = 499
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSS---YKHQRYSRAY 57
K+ +R K V+R LPP+L ++ + + W + GK K SRAY
Sbjct: 34 KQQTERLKTVVRRLPPNLPEDIFWQSVQQWVTAETATWKSYHQGKFRKRLNKENIPSRAY 93
Query: 58 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPD 117
+ K + F+ +GH+F ++ G + A+VE+AP Q+VP + D R GTI KD D
Sbjct: 94 IVFKDEELLANFSREYDGHLFRDKAGNESVAVVEFAPFQKVPSEKKKADGRMGTIEKDED 153
Query: 118 YLEFLKVI 125
Y+ FL +
Sbjct: 154 YVSFLASL 161
>gi|76157550|gb|AAX28438.2| SJCHGC04530 protein [Schistosoma japonicum]
Length = 230
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 32/181 (17%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R LPP L ND + + + Y FC S +RAY+ +F+
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPLPSHTYFRFC--DADDSLGALGLTRAYIAFSDIDSLFD 65
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQ-----RVPKPFSRK---DSREGTIFKDPDYLE 120
F E +G++F++ +G + A+VE+A Q +VP +++ D ++G++ D +Y+E
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDSEYIE 125
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETL---------------VVTPLMEYVRQ 165
F+K ++ SAE+ E E+E + E++ +VTPL+ Y+
Sbjct: 126 FVK-------SMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLTYLNN 178
Query: 166 K 166
+
Sbjct: 179 R 179
>gi|453081511|gb|EMF09560.1| Smg4_UPF3-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 582
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK---SSYKHQRYSRAYVEL 60
R K+ +R LPP L+ + + D + N + +W +R GK S K SRAYV L
Sbjct: 35 RLKLEVRRLPPGLTLEEFEGILGDEWKLGNGKVDWLEYRQGKVKLSLGKVPEQSRAYVHL 94
Query: 61 KKPAGVFEFAELLNGHVFVNEKGA-------QFKAIVEYAPSQRVP-KPFSRKDSREGTI 112
A + F F ++ G + +AP+QR R D+R+GTI
Sbjct: 95 VDEAAISAFEARFLAVTFQDKAGTYRNPDMKHLPPTLGFAPNQRTTINTKLRSDNRQGTI 154
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV--TPLMEYVRQKRAAE 170
+DP+++ FL+ +P SA I ++E E +V+ TPL+E +R+K+A++
Sbjct: 155 DQDPEFIAFLEAETQPIAR--SAAIDSVSVDSETP----EKVVIKSTPLIEALREKKASK 208
Query: 171 SGAQES 176
+ A ES
Sbjct: 209 AKAVES 214
>gi|328855091|gb|EGG04220.1| hypothetical protein MELLADRAFT_78386 [Melampsora larici-populina
98AG31]
Length = 460
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 22/206 (10%)
Query: 6 QRTKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFC------FRPGK---SSYKHQRY 53
+R KVVIRHLPP+L + L+ + D N+ C F PGK + K
Sbjct: 3 ERNKVVIRHLPPALPEEVFWKTLSPWIDPINESTPAKCLVTYKSFIPGKLRQNKGKIDLP 62
Query: 54 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 113
SRAY+ + EF F + +G +E+AP Q++P + D R GTI
Sbjct: 63 SRAYLYFSSVEDLVEFHHGYAQQAFRDSRGNITVPKIEFAPFQKIPTQVKKLDPRCGTID 122
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELS--GAPKETLVVTPLMEYVRQKRAAES 171
DY FLK + P E + + ++ L+ E +TPL++++R R +
Sbjct: 123 SSQDYQLFLKKLESPLNQ----ETEDDSNQSNLTEDSTKLEIPKITPLIQHLRSLRKS-- 176
Query: 172 GAQESLAVGRVGRR-SRAASASKTSS 196
AQE+ ++ +R + SASK SS
Sbjct: 177 -AQEATTAQKLQQRNTTTTSASKVSS 201
>gi|255570970|ref|XP_002526436.1| phosphoribosylamine--glycine ligase [Ricinus communis]
gi|223534216|gb|EEF35931.1| phosphoribosylamine--glycine ligase [Ricinus communis]
Length = 292
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 287 LDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLN 346
+ KQ S KN S T+ KQ Q+ EA GR+IR ILLN ++RQ QS + VQ +Q++Q+ N
Sbjct: 114 MSKQNAPSFDKNVTSSTI-KQRQQHEASGRIIRNILLNKDSRQNQS-SRVQSEQQIQSSN 171
Query: 347 QENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTR 406
E K L P P G + D SSDD+F LHG EKQEK TR
Sbjct: 172 LEKEKRLQRP---PRGQLVLKD---------VNGSSDDKFVGNDLHGFSG--EKQEKLTR 217
Query: 407 NKD 409
NKD
Sbjct: 218 NKD 220
>gi|396462222|ref|XP_003835722.1| hypothetical protein LEMA_P050630.1 [Leptosphaeria maculans JN3]
gi|312212274|emb|CBX92357.1| hypothetical protein LEMA_P050630.1 [Leptosphaeria maculans JN3]
Length = 618
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 26/176 (14%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++ R LPP L++ + A+ + + +W +R GK S K R SRAY+ +
Sbjct: 34 RLKLICRRLPPGLTKAEFEAVLGAEWKVGAGKIDWLNYRKGKISTDAAKPSRPSRAYIHV 93
Query: 61 KKPAGVFEFAELLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSREGTIFK 114
K + +L+ F + K Q A+V EYAP ++P R D+R+GTI +
Sbjct: 94 TKQEHIRVLGDLVLASTFHDATKSWQDPALVGPPTLEYAPYPKMPGGRRRNDNRQGTIDQ 153
Query: 115 DPDYLEFLKVIAKPAEN--LPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
D ++ +FL+ + P P ++Q +R + TPL+E +R+K+A
Sbjct: 154 DQEFKDFLESLTNPITKPIAPENDVQKDR------------VKTTPLIEALREKKA 197
>gi|409078127|gb|EKM78491.1| hypothetical protein AGABI1DRAFT_129598 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 497
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF-NDRYNWFCFRPGKSSYKHQRY---SRAYVE 59
P +R K+V+R LPP+L ++ + +D W + PGK + + SRAY+
Sbjct: 32 PGERLKIVVRRLPPNLPEDIFWQSVSNWVTDDTVMWKLYFPGKPKKRMNKENIPSRAYIA 91
Query: 60 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK----- 114
K + F+ +GH FV++ G + A+VE+AP Q+VP + DSR TI K
Sbjct: 92 FKDSEHLLFFSREYDGHKFVDKAGNESYAVVEFAPYQKVPGEKKKPDSRNATIEKGQALR 151
Query: 115 -------------DPDYLEFLKVI-----AKPAE--------NLPSAEIQLERKEAELSG 148
D DY+ F++ + A+P +L ++ I L S
Sbjct: 152 VRYAMFSISNAHLDEDYISFVESLNVQSNAEPVTIETLGAVLSLKASLIYLLTYPPVAST 211
Query: 149 APKETLVVTPLMEYVRQKRAAE 170
P TPL+E ++ +R A+
Sbjct: 212 RPASPPKTTPLLEALKAERQAQ 233
>gi|12854641|dbj|BAB30093.1| unnamed protein product [Mus musculus]
Length = 248
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPP L++ L R +++F S YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+ +
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
E S E L E+ +E L TPL+EY++ ++
Sbjct: 184 LEEEKTSASPETLL----GEIEAKTRELLARRTTPLLEYIKNRK 223
>gi|225706162|gb|ACO08927.1| Regulator of nonsense transcripts 3B [Osmerus mordax]
Length = 149
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TK+VIR LPPSL++ +L + Y F F S Y H ++RAY+ K +
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPLPEVDYLEF-FSSDTSMYPHL-FARAYINFKNQEDIV 93
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTI 112
F + +G+VF++ +G ++ AIVE+AP Q++ K S+K D++ GTI
Sbjct: 94 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKIAKKRSKKRDAKSGTI 139
>gi|323507764|emb|CBQ67635.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 519
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 59/192 (30%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW------------FCFRPGKSS------- 47
++KVVIR LPP+L + D+ + PG++S
Sbjct: 120 KSKVVIRRLPPNLPEEVFWKAVSPWIRDKADCQALAAASAAESAPESTPGEASTSSPSNA 179
Query: 48 -----------YKH-------------QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83
YKH +++RAYV P + F + +GH+F + KG
Sbjct: 180 SPSDAAAATVDYKHFVAGKLKTDTNKQNKHARAYVRFLDPQSLVHFHKAFDGHIFRDSKG 239
Query: 84 AQFKAIVEYAPSQRVPKPFS---------RKDSREGTIFKDPDYLEFLKVIAKPAENLPS 134
+ AIVE+AP Q+V P S + D ++GTI KD DYL F+ E L
Sbjct: 240 KESIAIVEFAPYQKVVLPPSAAAQRGRRAKPDPKQGTIDKDADYLSFV-------ERLNQ 292
Query: 135 AEIQLERKEAEL 146
A ++R E EL
Sbjct: 293 AGDDVKRSEGEL 304
>gi|390348040|ref|XP_791537.3| PREDICTED: regulator of nonsense transcripts 3B-like
[Strongylocentrotus purpuratus]
Length = 128
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
TKVVIR LPP+L++ + + D F D ++ + +S +H YSRAY+ K +
Sbjct: 16 TKVVIRCLPPALTEEEFREIV-DPFPDNEYFYYVKADRSLGEHA-YSRAYINFMKEEDII 73
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTI 112
F + +GH F N +G + A+VE+AP Q+VPK +K D+R TI
Sbjct: 74 PFRDTWDGHEFDNGQGLVYPAVVEFAPYQKVPKVIGKKVDARTATI 119
>gi|82752819|ref|XP_727441.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483284|gb|EAA19006.1| Drosophila melanogaster SD10857p [Plasmodium yoelii yoelii]
Length = 317
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCF---RPGKSSYKHQRYSRAYVELK 61
+++ K+VIR+LPP+L++N+ F ++ D +++ + GK+S +SR Y+ K
Sbjct: 151 VKKKKIVIRNLPPTLNENNFFDSFSNNLKDELDYYYYVNGSIGKNSSDDIIHSRIYLSFK 210
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
EF + +G F + G ++KA V +AP+Q + +R D+R T+ DP +L+
Sbjct: 211 DYMKTEEFIKTQDGKYFYDTNGVKYKANVTFAPNQTIIHK-NRIDNRNNTLESDPYFLKC 269
Query: 122 LKVIAKPAE 130
+ + P E
Sbjct: 270 CEEMHNPIE 278
>gi|226488837|emb|CAX74768.1| putative hUPF3A [Schistosoma japonicum]
Length = 533
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 35/181 (19%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R LPP L ND + + + Y FC S +RAY+ +F+
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPLPSHTYFRFC--DADDSLGALGLTRAYIAFSDIDSLFD 65
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQ-----RVPKPFSRK---DSREGTIFKDPDYLE 120
F E +G++F++ + A+VE+A Q +VP +++ D ++G++ D +Y+E
Sbjct: 66 FKERFDGYIFLD---CESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDSEYIE 122
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETL---------------VVTPLMEYVRQ 165
F+K ++ SAE+ E E+E + E++ +VTPL+ Y+
Sbjct: 123 FVK-------SMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLTYLNN 175
Query: 166 K 166
+
Sbjct: 176 R 176
>gi|429862350|gb|ELA37002.1| nonsense-mediated mrna decay protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 627
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS---YKHQRYSRAYVELKK 62
KVVIR LPP L++ +L D + +W F GK S K R +R Y+ + K
Sbjct: 42 KVVIRRLPPGLTEQELWNKLGDEWKAGQGLVSWHNFEAGKISQDAAKPSRPARVYLNVLK 101
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPFSRKDSREGTIFKDP 116
+ + L+ + + K ++E A ++P R D R+GTI +DP
Sbjct: 102 REDLNTLSNLIQARSWEDAKMTSNSPSLVGPPVLEMASYNKIPSGKKRTDPRQGTIDQDP 161
Query: 117 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 163
+++ FL+ + P +N + E K+A P + TPL+E++
Sbjct: 162 EFMAFLQDLTNPEQNKETE--GSESKDAADESKPDAKVTTTPLIEFL 206
>gi|119629654|gb|EAX09249.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_c [Homo sapiens]
gi|119629655|gb|EAX09250.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_c [Homo sapiens]
Length = 250
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R +++F F S YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIA 126
F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL+
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
>gi|28436870|gb|AAH47049.1| Upf3b protein, partial [Mus musculus]
Length = 388
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 46 SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSR 104
S Y H Y+RAY+ K + F + +G+VF++ KG ++ AIVE+AP Q K +
Sbjct: 4 SLYPHM-YARAYINFKNQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKK 62
Query: 105 KDSREGTIFKDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLME 161
+D++ GTI DP+Y +FL+ A E + S E LE E+ +E + TPL+
Sbjct: 63 RDTKVGTIEDDPEYRKFLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLS 118
Query: 162 YVRQK 166
+++ K
Sbjct: 119 FLKNK 123
>gi|148697044|gb|EDL28991.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_b [Mus musculus]
Length = 386
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 46 SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSR 104
S Y H Y+RAY+ K + F + +G+VF++ KG ++ AIVE+AP Q K +
Sbjct: 2 SLYPHM-YARAYINFKNQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKK 60
Query: 105 KDSREGTIFKDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLME 161
+D++ GTI DP+Y +FL+ A E + S E LE E+ +E + TPL+
Sbjct: 61 RDTKVGTIEDDPEYRKFLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLS 116
Query: 162 YVRQK 166
+++ K
Sbjct: 117 FLKNK 121
>gi|452978770|gb|EME78533.1| hypothetical protein MYCFIDRAFT_190784 [Pseudocercospora fijiensis
CIRAD86]
Length = 512
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK---SSYKHQRYSR 55
K P R K+ IR LPP L+ + + D + N R +W +R GK S+ K SR
Sbjct: 30 KGPAPRLKLEIRRLPPGLTLTEFEEILGDEWKPGNGRVDWREYRQGKVKQSAAKVPEQSR 89
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGA-------QFKAIVEYAPSQRVPKPFS-RKDS 107
Y+ L + E F ++ G + YAP+QRVP R D+
Sbjct: 90 CYMHLLSEPILKELEVRFLEASFHDKAGTYRLPDLKHLPPTIGYAPNQRVPTTTKVRTDN 149
Query: 108 REGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 164
R+GTI +DP+++ FL+ +P P+A L+ E A KE + TPL+E +R
Sbjct: 150 RQGTIDQDPEFMLFLQAETQPIFK-PAA---LDTLGVEAEKAEKEQIKSTPLIEALR 202
>gi|336385749|gb|EGO26896.1| hypothetical protein SERLADRAFT_436716 [Serpula lacrymans var.
lacrymans S7.9]
Length = 493
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSY---KHQRYSRAYVELK 61
+R K VIR LPP+L ++ + D W F PGK K SRAY+ +
Sbjct: 30 ERLKTVIRRLPPNLPEDVFWQSVQSWVTDDTTLWKMFYPGKVGKRINKENIPSRAYIAFR 89
Query: 62 KPAGVFEFAELLNGHVFVNEKGA-----------------QFKAIVEYAPSQRVPKPFSR 104
+ F+ +GH+F ++ G + +A+VE+AP Q++P +
Sbjct: 90 NEEQLAIFSREYDGHLFRDKAGLSRQLSLHSVIEMYLPGNESQAVVEFAPYQKIPTEKKK 149
Query: 105 KDSREGTIFKDPDYLEFLKVI 125
D+R TI KD DYL F++ +
Sbjct: 150 ADARNATIEKDEDYLSFVESL 170
>gi|440893685|gb|ELR46360.1| Regulator of nonsense transcripts 3A, partial [Bos grunniens mutus]
Length = 460
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 23/177 (12%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 1 QVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSLYPHLYSRAYINFRNPDDILL 58
Query: 69 FAELLNGHVFVNE---------------KGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTI 112
F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I
Sbjct: 59 FRDRFDGYIFIDSKEKPFQNGFCNLFPVKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSI 118
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 167
DP+Y +FL+ E + E ++ +E + TPL+EY++ ++
Sbjct: 119 EDDPEYKKFLETYCVEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 172
>gi|330931624|ref|XP_003303476.1| hypothetical protein PTT_15697 [Pyrenophora teres f. teres 0-1]
gi|311320521|gb|EFQ88437.1| hypothetical protein PTT_15697 [Pyrenophora teres f. teres 0-1]
Length = 623
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 30/178 (16%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++ R LPP L++ + + D + + +W +R GK S K + +RAY+ +
Sbjct: 34 RLKLICRRLPPGLTKAEFIEALGDEWKLGAGKIDWINYRKGKISTDAAKPSKPARAYIHV 93
Query: 61 KKPAGVFEFAELLNGHVFV-----NEKGAQFKAIV-----EYAPSQRVPKPFSRKDSREG 110
K E ++L HV K Q +V EY+P ++P R D+R+G
Sbjct: 94 TK----QEHVKVLGDHVRTVTFHDATKSWQDPVLVGPPTLEYSPYPKMPGGRRRNDNRQG 149
Query: 111 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
TI +D ++ +FL+ + P +AE + + KE + TPL+E +R+K+A
Sbjct: 150 TIDQDQEFKDFLESLTNPITKPAAAENEGQ----------KEKVKTTPLIEALREKKA 197
>gi|393219819|gb|EJD05305.1| hypothetical protein FOMMEDRAFT_165771 [Fomitiporia mediterranea
MF3/22]
Length = 522
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 45/207 (21%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSYKHQRY---SRAYVEL 60
+ R K V+R LPP+L ++ + D +W F GK K+ + SRAY+
Sbjct: 35 VDRLKAVVRRLPPNLPEDVFWQSVQPWVTDESVSWRTFYSGKVRKKYNKENTPSRAYIAF 94
Query: 61 KKPAGVFEFAELLNGHVFVNE----------------KGAQFKAIVEYAPSQRVPKPFSR 104
K + F++ +GH+F ++ KG + AIVE+APSQ+VP +
Sbjct: 95 KTAEQLATFSQAYDGHIFRDKSGMTPNLSYHYSYRQVKGNESVAIVEFAPSQKVPSEKRK 154
Query: 105 KDSREGTIFK--------------------DPDYLEFLKVIAKPAENLPSAEIQLERKEA 144
D R GTI + D D++ F + PA S + + EA
Sbjct: 155 LDPRMGTIDQGNSRPLNTSLIYTQNDIWSIDEDFISFFTALNTPA----SKTTETDAIEA 210
Query: 145 ELSGA-PKETLVVTPLMEYVRQKRAAE 170
++ + P TPL++ +R ++ A+
Sbjct: 211 LVAASQPPPQPKSTPLLDALRAEKQAQ 237
>gi|407926218|gb|EKG19187.1| Regulator of nonsense-mediated decay UPF3 [Macrophomina phaseolina
MS6]
Length = 435
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 49 KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPF 102
K R SRAY+ L + A V A+ + F + K + V++AP R+P
Sbjct: 7 KPSRPSRAYLHLTEQAHVVPLADKVRKTAFTDAKNSTRDPALIGPPTVDFAPFNRIPGGR 66
Query: 103 SRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEY 162
R D+R+G I +DP++ +FL+ + P SA + E + K+ + TPL+E+
Sbjct: 67 RRNDARQGLIDQDPEFKDFLESLTNPVPK--SAPVDNAADEVAVK---KDEVRTTPLIEH 121
Query: 163 VRQKRAAESGAQESLAVGRVGR 184
+R+K+AA+ Q + A G+ GR
Sbjct: 122 LREKKAAKEKPQPAKAQGKHGR 143
>gi|255078842|ref|XP_002503001.1| predicted protein [Micromonas sp. RCC299]
gi|226518267|gb|ACO64259.1| predicted protein [Micromonas sp. RCC299]
Length = 389
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 47/212 (22%)
Query: 6 QRTKVVIRHLPPSLSQNDLL-ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
+RTK V R+LPP L ++ + AL + F RY + + G + S A+++
Sbjct: 4 RRTKAVCRNLPPDLPESAFVRALAAEGFAGRYGYLDYARGAWKQRLPVPSVAWIQFADEQ 63
Query: 65 GVFEFAELLNGHVF---------------------------VNEKGA------------- 84
+F+F G +F E+GA
Sbjct: 64 ALFDFRGAFGGRIFRAGERDDAEERAGGESATENAEGDGEPAPEEGAPAATKNTAVPEGM 123
Query: 85 -QFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI-----AKPAENLPSAEIQ 138
+++A VEYAP+Q+ P+ +D REGTI KD YL+F+K + A PA + + +
Sbjct: 124 EEWRARVEYAPNQKTPRGKQHRDKREGTIGKDAAYLQFVKDLEASMEAPPAPTMTAEQAL 183
Query: 139 LERKEAELSGAPKETLVVTPLMEYVRQKRAAE 170
R+ AE + K V+ L+ YV +++ E
Sbjct: 184 ERREAAERAATGKSDFKVSALLRYVMEQKKKE 215
>gi|156099182|ref|XP_001615593.1| mRNA decay protein [Plasmodium vivax Sal-1]
gi|148804467|gb|EDL45866.1| mRNA decay protein, putative [Plasmodium vivax]
Length = 302
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELK 61
+ K++IRHLPP+LS+++ F + D +++ + G K+ +SR Y+ K
Sbjct: 136 VHNKKIIIRHLPPTLSEDNFFESFPSNLKDELDYYYYVNGCVPKNQGGDITHSRMYLSFK 195
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
EF + +G F + G +FKA+V +AP Q + ++ D T+ D +L+
Sbjct: 196 DDLKTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKLDEMNNTLESDAYFLKC 254
Query: 122 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTP 158
+ + P E ++ + A+LS KE V+ P
Sbjct: 255 CEEMNNPQE-----PVKKDDDNADLSNVIKEDGVILP 286
>gi|452838806|gb|EME40746.1| hypothetical protein DOTSEDRAFT_74324 [Dothistroma septosporum
NZE10]
Length = 547
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 123/268 (45%), Gaps = 26/268 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSY---KHQRYSR 55
K P R K+ IR LPP L+ + D + N + +W ++ GK K SR
Sbjct: 30 KGPAPRLKLEIRRLPPGLTLTEFEETLGDEWKLGNGKVDWREYKQGKVKLGMGKMPEQSR 89
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQ-------FKAIVEYAPSQRVPKPF-SRKDS 107
Y+ + + V E + G F ++ G + +E+A +QR P +R DS
Sbjct: 90 CYLRVANESMVKELEQRFLGVTFADKAGTHKNPDLRHLQPALEFAMNQRTPLATKARVDS 149
Query: 108 REGTIFKDPDYLEFLKVIAKPAENLPSAE-IQLERKEAELSGAPKETLVVTPLMEYVRQK 166
R+GTI +DP+++ FL +P S + + E+KE E K + TPL+E +R K
Sbjct: 150 RQGTIDQDPEFMAFLMGETEPIVKAASLDAVGAEKKEGE-----KNEVKTTPLIEALRDK 204
Query: 167 RAAESGAQESL------AVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRK 220
+A+++ A ES A G S+ A+ +K+ + K +K + + K++ K R+
Sbjct: 205 KASKAKAAESKAAEKKDAKGHTRTDSKDAAPAKSDAKDNKIPRQKVEQVSKEAVKALNRQ 264
Query: 221 DKSTFTVVAKREDQPASSSGKETSASET 248
+R P + K +S ++T
Sbjct: 265 VADMQQQAQQRPTSPLPPTAKSSSPAKT 292
>gi|326913847|ref|XP_003203244.1| PREDICTED: regulator of nonsense transcripts 3A-like [Meleagris
gallopavo]
Length = 413
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 36 YNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS 95
+++F F S YSRAY+ + P + F + +G+VF++ KG ++ A+VE+AP
Sbjct: 14 HDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPF 73
Query: 96 QRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETL 154
Q++ K +K + G+I DP+Y +FL+ E + + L E+ +E +
Sbjct: 74 QKISKKKLKKKDAKAGSIEDDPEYRKFLESYCADEEKICANPETL---LGEIEAKTRELI 130
Query: 155 V--VTPLMEYVRQKR 167
TPL+EY++ ++
Sbjct: 131 ARRTTPLLEYIKNRK 145
>gi|256090058|ref|XP_002581038.1| upf3 regulator of nonsense transcripts-like protein [Schistosoma
mansoni]
Length = 280
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
KVV+R LPP L +D + + + Y FC S +R Y+ +F+
Sbjct: 8 KVVVRGLPPKLGADDFIRIVDPLPSHTYFRFC--GADDSLGGLGLTRVYITFNDMDSLFD 65
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP--------FSRKDSREGTIFKDPDYLE 120
F E +G++F++ +G + A+VE+A Q + + D ++G++ KD Y++
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFAVCQVLACAKGSSDDNGGGKVDKKQGSLLKDSAYVK 125
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV---------------VTPLMEYVRQ 165
FL SAE+ E E+E P E+++ VTPL+ Y+
Sbjct: 126 FLSS--------QSAEVCAEISESESKKTPWESILDDLQNKEVNALQTQTVTPLLTYLNN 177
Query: 166 KRAAESGAQESLAVGRVGRRSRAASASKT 194
+ E + R R+ A++ KT
Sbjct: 178 RGGDIRRKDEESSRHRQFRQGNASAIKKT 206
>gi|358057294|dbj|GAA96643.1| hypothetical protein E5Q_03314 [Mixia osmundae IAM 14324]
Length = 427
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 36/202 (17%)
Query: 7 RTKVVIRHLPPSLSQN-------------------DLLALFRDHFNDRY---------NW 38
R K+V+RHLPP+L ++ D D + +W
Sbjct: 50 RQKIVVRHLPPNLPEHLFWKSVQQALPGVQLSASTDTAPTTHDAPEQVHEAQPSPSVIDW 109
Query: 39 FCFRPGK---SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS 95
+ PGK S + SRAY+ + + F +GH+F + G +A VE+AP
Sbjct: 110 QAYYPGKLRKSKGQEDVPSRAYLHFTELDTLVAFCSAYDGHMFRDSAGNVSRAQVEFAPY 169
Query: 96 QRVPKPFS--RKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKET 153
Q++P P + + D ++ +I +D D+ F++ + P + A + A K+
Sbjct: 170 QKLPLPQTEAKADPKQNSILEDTDFTVFVETLRAPER---AETADGASAAAAAAAASKDA 226
Query: 154 LVVTPLMEYVRQKRAAESGAQE 175
TPL+EY+R++RA + A+E
Sbjct: 227 KKSTPLLEYLRKQRATDLAARE 248
>gi|189188818|ref|XP_001930748.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972354|gb|EDU39853.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 619
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 30/178 (16%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVEL 60
R K++ R LPP L++ + + D + + +W +R GK S K + +RAY+ +
Sbjct: 34 RLKLICRRLPPGLTKAEFIEALGDEWKLGAGKIDWINYRKGKISTDAAKPSKPARAYIHV 93
Query: 61 KKPAGVFEFAELLNGHVFV-----NEKGAQFKAIV-----EYAPSQRVPKPFSRKDSREG 110
K + ++L HV K Q +V EYAP ++P R D+R+G
Sbjct: 94 TK----QDHVKVLGDHVRTITFHDATKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQG 149
Query: 111 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 168
TI +D ++ +FL+ + P + + A + KE + TPL+E +R+K+A
Sbjct: 150 TIDQDQEFKDFLESLTNP----------ITKPAAPENEGQKEKVKTTPLIEALREKKA 197
>gi|320593952|gb|EFX06355.1| nonsense-mediated mRNA decay protein [Grosmannia clavigera kw1407]
Length = 808
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND---RYNWFCFRPGKSSYKHQRYSR--- 55
K ++ K VIR LPP L++++ + D + R W F GK S + SR
Sbjct: 43 KTAVEGDKFVIRRLPPGLTEDEFFTILGDEWKQGRGRVGWLSFHAGKISKDPSKPSRPAF 102
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 109
A + + + + ++++ +V+ K + ++ E++ ++VP R DSR+
Sbjct: 103 AVLHVLRNEDLGLLSDVVRSASWVDAKESWTSPVLVGPPVAEFSLYKKVPSGKRRTDSRQ 162
Query: 110 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKE----------------AELSGAPKET 153
GTI +D +++ FL+ +A P SA + E A +T
Sbjct: 163 GTIDQDAEFMAFLEALANPTSAKESAAAAANGTDGGQTATATNGAAGGALGEDDAAKTKT 222
Query: 154 LVV-TPLMEYVRQKRAAESGAQESLAVGRVGRRSR 187
V TPL++++R+K+A +S + A G+ G++ R
Sbjct: 223 KVTSTPLIDFLREKKANKS---KETANGKSGKQGR 254
>gi|171690100|ref|XP_001909982.1| hypothetical protein [Podospora anserina S mat+]
gi|170945005|emb|CAP71116.1| unnamed protein product [Podospora anserina S mat+]
Length = 689
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYS---RAYVELKK 62
KVVIR LPP L++ + A+ + + + + +W+ + PGK S + S RAY+ + +
Sbjct: 38 KVVIRRLPPGLTEAEFHAILGNEWKLGDGKVDWYKWYPGKVSQHPSKPSTPARAYLHVSQ 97
Query: 63 PAGVFEF------AELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 116
+ E A+ + N+ VE++ +++P R D R+GTI +DP
Sbjct: 98 RDQLPELLRKVQEAKWEDAKETYNDPALVAPPTVEFSVYKKIPSEKKRVDGRQGTIDQDP 157
Query: 117 DYLEFLKVIAKPAEN 131
+++ FL+ +A P N
Sbjct: 158 EFMAFLESLASPDGN 172
>gi|389585052|dbj|GAB67783.1| mRNA decay protein, partial [Plasmodium cynomolgi strain B]
Length = 266
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELK 61
+ K++IRHLPP+LS+++ F + D +++ + G K++ +SR Y+ K
Sbjct: 120 VHNKKIIIRHLPPTLSEDNFFDSFPSNLKDELDYYYYVNGCVPKNAGGDITHSRMYLSFK 179
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
EF + +G F + G +FKA+V +AP Q + ++ D T+ D +L+
Sbjct: 180 DDLKTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKSDDMNNTLESDAYFLKC 238
Query: 122 LKVIAKPAE 130
+ + P E
Sbjct: 239 CEEMNNPEE 247
>gi|449267882|gb|EMC78773.1| Regulator of nonsense transcripts 3B, partial [Columba livia]
Length = 387
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 46 SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK 105
S Y H +SRAY+ K + F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K
Sbjct: 1 SLYPHM-FSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKK 59
Query: 106 DSRE-GTIFKDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLME 161
+ GTI DP+Y +FL+ + E L S E LE E+ KE + TPL+
Sbjct: 60 KDAKTGTIEDDPEYKKFLESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLN 115
Query: 162 YVRQK 166
+++ K
Sbjct: 116 FLKNK 120
>gi|449295821|gb|EMC91842.1| hypothetical protein BAUCODRAFT_78782 [Baudoinia compniacensis UAMH
10762]
Length = 482
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK--SSYKHQRYSRA 56
K P R K+ IR LPP L+ ++ D + N + +W +R GK + K SR
Sbjct: 28 KTPAARLKLEIRRLPPGLTLSEFEETLGDDWKLSNGKVDWREYRQGKIKAPGKVPEQSRC 87
Query: 57 YVELKKPAGVFEFAELLNGHVFVNEKGAQ-------FKAIVEYAPSQRVP-KPFSRKDSR 108
Y+ + V EF + +F ++ G + +AP+QR P + SR D+R
Sbjct: 88 YLHVVNDTLVREFEQRFLQVLFQDKAGTHRNPDLKFLPPTLGFAPNQRTPLQSKSRADNR 147
Query: 109 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV--TPLMEYVR 164
+GTI +DP+++ FL+ +P P A ++ GA KE + V TPL+E +R
Sbjct: 148 QGTIDQDPEFIAFLEAETQPLTK-PGA--------LDIVGAEKERVEVKTTPLIEDLR 196
>gi|358338395|dbj|GAA41070.2| regulator of nonsense transcripts 3, partial [Clonorchis sinensis]
Length = 509
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
TKVVIR LPP L+ A FR + + +F F + + +RAY+
Sbjct: 14 TKVVIRRLPPKLTD----AEFRQIVDPLPPHTYFRFCSPDPTLGNLGTARAYITFCDIDA 69
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP--------KPFSRKDSREGTIFKDPD 117
+F+F E + +VFV+ +G + +VE+A Q + K + D ++GT+ +DPD
Sbjct: 70 LFDFKERFDDYVFVDSEGNESYGLVEFAICQTLATTKETSTGKRSEKFDKKQGTLNEDPD 129
Query: 118 YLEFLKVIAKPAENLPSA 135
+ +FLK I +P EN A
Sbjct: 130 FQDFLKTI-QPPENATEA 146
>gi|47169312|pdb|1UW4|A Chain A, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
gi|47169314|pdb|1UW4|C Chain C, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
Length = 91
Score = 62.8 bits (151), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 2 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 57
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR 97
+ F + +G+VF++ KG ++ AIVE+AP Q+
Sbjct: 58 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 89
>gi|26328937|dbj|BAC28207.1| unnamed protein product [Mus musculus]
Length = 216
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPP L++ L R +++F S YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 123
F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLE 180
>gi|360043976|emb|CCD81522.1| upf3 regulator of nonsense transcripts-like protein [Schistosoma
mansoni]
Length = 338
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
KVV+R LPP L +D + + + Y FC S +R Y+ +F+
Sbjct: 8 KVVVRGLPPKLGADDFIRIVDPLPSHTYFRFC--GADDSLGGLGLTRVYITFNDMDSLFD 65
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP--------FSRKDSREGTIFKDPDYLE 120
F E +G++F++ +G + A+VE+A Q + + D ++G++ KD Y++
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFAVCQVLACAKGSSDDNGGGKVDKKQGSLLKDSAYVK 125
Query: 121 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV---------------VTPLMEYVRQ 165
FL SAE+ E E+E P E+++ VTPL+ Y+
Sbjct: 126 FLSS--------QSAEVCAEISESESKKTPWESILDDLQNKEVNALQTQTVTPLLTYLNN 177
Query: 166 KRAAESGAQESLAVGRVGRRSRAASASKT 194
+ E + R R+ A++ KT
Sbjct: 178 RGGDIRRKDEESSRHRQFRQGNASAIKKT 206
>gi|403273083|ref|XP_003928355.1| PREDICTED: regulator of nonsense transcripts 3A [Saimiri
boliviensis boliviensis]
Length = 444
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 48 YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS 107
Y H YSRAY+ + P + F + +G++F++ KG ++ A+VE+AP Q++ K +K
Sbjct: 75 YPHL-YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKD 133
Query: 108 RE-GTIFKDPDYLEFLKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYV 163
+ G+I DP+Y +FL+ E + E+ L E+ +E + TPL+EY+
Sbjct: 134 AKTGSIEDDPEYKKFLETYCVEEEKTSTNPEMLL----GEMEAKTRELIARRTTPLLEYI 189
Query: 164 RQKR 167
+ ++
Sbjct: 190 KNRK 193
>gi|302565879|pdb|2L08|A Chain A, Solution Nmr Structure Of Nonsense Mrna Reducing Factor
3a From H. Sapiens, Northeast Structural Genomics
Consortium Target Hr4714b
Length = 97
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEF 69
VVIR LPP L++ L R +++F F S YSRAY+ + P + F
Sbjct: 12 VVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLF 69
Query: 70 AELLNGHVFVNEKGAQFKAIVEYAPSQR 97
+ +G++F++ KG ++ A+VE+AP Q+
Sbjct: 70 RDRFDGYIFLDSKGLEYPAVVEFAPFQK 97
>gi|355701126|gb|EHH29147.1| Nonsense mRNA reducing factor 3A, partial [Macaca mulatta]
Length = 373
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 46 SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK 105
S Y H YSRAY+ + P + F + +G++F++ KG ++ A+VE+AP Q++ K +K
Sbjct: 2 SLYPHL-YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKK 60
Query: 106 DSRE-GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEY 162
+ G+I DP+Y +FL+ E + L E+ +E + TPL+EY
Sbjct: 61 KDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETL---LGEMEAKTRELIARRTTPLLEY 117
Query: 163 VRQKR 167
++ ++
Sbjct: 118 IKNRK 122
>gi|388852343|emb|CCF53958.1| uncharacterized protein [Ustilago hordei]
Length = 505
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 68/230 (29%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFND-----------------------------RYN 37
++KVV+R LPP+L + D +
Sbjct: 116 KSKVVVRRLPPNLPEQVFWKAVSPWVRDAADCQAITSSSDGAEASSSTLPAPTPATPTVD 175
Query: 38 WFCFRPGK---SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP 94
+ F GK S K + +RAY+ P + F + +GH+F + KG +IVE+AP
Sbjct: 176 FKSFIRGKLKSDSNKQNKLARAYIRFLDPTSLVTFHKNFDGHIFRDAKGKGSVSIVEFAP 235
Query: 95 SQRVPKPFS------------RKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQ-LER 141
Q+V S + D ++G+I KD DYL F+ E L + E Q ++R
Sbjct: 236 YQKVVLSPSTTGAGVGRGRRMKPDPKQGSIEKDADYLAFV-------EKLENVEDQGVKR 288
Query: 142 KEAELSGA---PKETL----------VVTPLMEYVRQKRAAESGAQESLA 178
E +L + PKE + +TPL+E++R + A+ +ES+A
Sbjct: 289 SEGDLLASLWDPKEKVREREEQVEKGKMTPLLEHLRAVKMAK---RESVA 335
>gi|443896125|dbj|GAC73469.1| nonsense-mediated decay protein Upf3 [Pseudozyma antarctica T-34]
Length = 572
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 37/170 (21%)
Query: 7 RTKVVIRHLPPSLSQ----NDLLALFRD---------------------------HFNDR 35
++KVVIR LPP+L + + RD
Sbjct: 154 KSKVVIRRLPPNLPEAVFWKAVSPWIRDAADCQPPASDSLTSSSGEASASTSSASALTPT 213
Query: 36 YNWFCFRPGK---SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEY 92
++ F PGK + K +++RAYV + F + +GH+F + K + AIVE+
Sbjct: 214 VDFKQFIPGKLKTDASKQNKHARAYVRFLDANALVLFHKHFDGHIFRDSKARETVAIVEF 273
Query: 93 APSQRVPKPFSRK---DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQL 139
AP Q+V R+ D ++GTI D DYL F++ ++K E+ AE L
Sbjct: 274 APYQKVVPARGRRSKPDPKQGTIETDADYLAFVERLSKAGEDDKRAEGDL 323
>gi|344241026|gb|EGV97129.1| Regulator of nonsense transcripts 3A [Cricetulus griseus]
Length = 414
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR-----DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
+KVV+R LPP L++ L R D+F S Y H YSRAY+ +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPAHDYFE------VVAADLSLYPHL-YSRAYINFRN 118
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ 96
P + F + +G++F+ KG ++ A+VE+AP Q
Sbjct: 119 PDDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQ 152
>gi|12861524|dbj|BAB32218.1| unnamed protein product [Mus musculus]
Length = 155
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPP L++ L R +++F S YSRAY+ + P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRV 98
F + +G++F+ KG ++ A+VE+AP Q++
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKI 154
>gi|124513328|ref|XP_001350020.1| upf3, putative [Plasmodium falciparum 3D7]
gi|23615437|emb|CAD52428.1| upf3, putative [Plasmodium falciparum 3D7]
Length = 271
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 15 LPPSLSQNDLLALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELKKPAGVFEFAE 71
LPP+L++ + F ++ D +++ F G K S YSR Y+ K EF
Sbjct: 119 LPPTLTEENFFDSFSNNIKDELDYYYFVNGSASKDSSNDIIYSRMYLSFKDDMKTDEFIR 178
Query: 72 LLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAE 130
NG F + G ++KA+V YAP+Q + K ++ DSR T+ D +L+ + + P +
Sbjct: 179 TQNGKFFYDLNGVKYKALVSYAPNQTLIKK-NKPDSRNNTLESDEYFLKCCEEMNNPVQ 236
>gi|303278904|ref|XP_003058745.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459905|gb|EEH57200.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 417
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKK 62
+ RTK V+R+LPP + A D + F GK + S A+V
Sbjct: 1 MPRTKAVVRNLPPDQDASSFFASVDASGFDGTTCAYRDFVQGKRKTRVVIPSVAHVGFDT 60
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
+F+FA + + + G +++A VEYAP Q++P+ R D REGTI +D DY +F+
Sbjct: 61 ERALFDFAAAFDARAYDDAFGGEWRARVEYAPYQKIPRLKPRLDKREGTIERDADYKKFV 120
Query: 123 KVIAKPAENLPSAEIQLERKE-----AELSGAPKETLVVTPLMEYVRQKRAAE 170
+ +A+ + SAE+ L+R+E E + K + ++ LM+++ KR AE
Sbjct: 121 EKLAEDPVAMQSAEVLLDRREREKKALERANGGKAPVRLSALMKHLIAKREAE 173
>gi|326924603|ref|XP_003208515.1| PREDICTED: regulator of nonsense transcripts 3B-like, partial
[Meleagris gallopavo]
Length = 379
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIF 113
RAY+ + + F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI
Sbjct: 1 RAYINFRNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIE 60
Query: 114 KDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 166
DP+Y +FL+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 61 DDPEYKKFLESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 112
>gi|393910095|gb|EFO23381.2| hypothetical protein LOAG_05102 [Loa loa]
Length = 433
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R LP +++ L ++ F KSS + +SR Y KK
Sbjct: 26 KIVLRRLPAAMTWEQLEIQLSPIPEFEFSEFIV--AKSS-EGMSFSRVYFVFKKDDDTIA 82
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPDYLEFLKV 124
F E NG+VFV+ KG + IVE AP+ +VP + +D + GTI D +Y +FL
Sbjct: 83 FKERFNGYVFVDNKGGESVGIVELAPNPKVPHDKLETAKERDFKCGTIETDHEYKKFLSE 142
Query: 125 IAKPA--ENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
P + +P ++ E E E K + TPL +Y+ +K
Sbjct: 143 RENPQKPDLIPVEQLIKEIDEKE-KMVEKNAVQETPLTQYMIRK 185
>gi|336372911|gb|EGO01250.1| hypothetical protein SERLA73DRAFT_50679 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 54 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 113
SRAY+ + + F+ +GH+F ++ G + +A+VE+AP Q++P + D+R TI
Sbjct: 8 SRAYIAFRNEEQLAIFSREYDGHLFRDKAGNESQAVVEFAPYQKIPTEKKKADARNATIE 67
Query: 114 KDPDYLEFLKVI 125
KD DYL F++ +
Sbjct: 68 KDEDYLSFVESL 79
>gi|325193356|emb|CCA27694.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 382
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 35/232 (15%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFC-----FRPGKSSYKHQRYSRA 56
KE + KV+IR++PPS++ ++ + YN C F GK+ +
Sbjct: 96 KETISPCKVLIRNIPPSVTLEEMRVILAP-----YNISCNMIWRFVAGKTRMNERPCVTG 150
Query: 57 YVELKKPAGVFEFAEL---LNGHVF-VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
+ L + AEL LNG N+K ++ V YAPS+R+P R+D + G I
Sbjct: 151 RMYLDYKGDNVKAAELITSLNGFAIESNQKDSKRTLEVAYAPSRRLPGDRRRRDPKVGEI 210
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 172
F DP YLEF++ + PA+ PS I +EAEL P + +++++ +K+
Sbjct: 211 FNDPAYLEFIEALDAPAQK-PS--IDSTSQEAELIEQP-----IPAVVQFLNEKK----- 257
Query: 173 AQESLAVGRVGRRSRAASASKTSSTTTKRGSE-KKKYILKDSAKNARRKDKS 223
GR R A K +T R SE KK K +NA K+K+
Sbjct: 258 -------GRERLRKGNAFEKKRPTTRHFRKSETKKSKFTKSDTQNAESKEKT 302
>gi|312076048|ref|XP_003140687.1| hypothetical protein LOAG_05102 [Loa loa]
Length = 464
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R LP +++ L ++ F KSS + +SR Y KK
Sbjct: 26 KIVLRRLPAAMTWEQLEIQLSPIPEFEFSEFIV--AKSS-EGMSFSRVYFVFKKDDDTIA 82
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPDYLEFLKV 124
F E NG+VFV+ KG + IVE AP+ +VP + +D + GTI D +Y +FL
Sbjct: 83 FKERFNGYVFVDNKGGESVGIVELAPNPKVPHDKLETAKERDFKCGTIETDHEYKKFLSE 142
Query: 125 IAKPA--ENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
P + +P ++ E E E K + TPL +Y+ +K
Sbjct: 143 RENPQKPDLIPVEQLIKEIDEKE-KMVEKNAVQETPLTQYMIRK 185
>gi|221058833|ref|XP_002260062.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193810135|emb|CAQ41329.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 266
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELK 61
+ K++IRHLPP+LS+++ F + D +++ + G K+ +SR Y+ K
Sbjct: 120 VHNKKIIIRHLPPTLSEDNFFDSFPSNLKDELDYYYYVNGCVPKNPGGDITHSRMYLSFK 179
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 121
EF + +G F + G +FKA+V +AP Q + ++ D T+ D +L++
Sbjct: 180 DDLKTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKLDDMNNTLESDAYFLKY 238
Query: 122 LKVIAKPAENLPSAE--IQLERKEAELSGAPKETL 154
E + ++E I+ ++ +L KE L
Sbjct: 239 -------CEEMNNSEEPIKKDQDNGDLINVMKEDL 266
>gi|351702555|gb|EHB05474.1| Regulator of nonsense transcripts 3A [Heterocephalus glaber]
Length = 189
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 48 YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR-VPKPFSRKD 106
Y H YSRA + + P + F + +G+VF++ KG ++ A+VE+AP Q+ V + ++D
Sbjct: 102 YPHL-YSRACINFRNPDDILLFRDRFDGYVFMSSKGLEYPAVVEFAPFQKIVRRKLKKRD 160
Query: 107 SREGTIFKDPDYLEF 121
++ G+I DP+Y F
Sbjct: 161 TKMGSIEDDPEYTVF 175
>gi|213408813|ref|XP_002175177.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|212003224|gb|EEB08884.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 310
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 25/172 (14%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDH---FNDRYNWFCFRPG--KSSYKHQRYSRAYVELKK 62
K+V+R LP +L + +F D +++ F PG + + +S A + K
Sbjct: 13 CKLVVRKLPANLPAS----VFWDSVKPWHEAIERSRFHPGHLQPEKDLEVHSYAILLFKS 68
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 122
P V F H FVN+ ++ A V AP+Q+ RKDSR GT+ +D D+++F
Sbjct: 69 PEQVTSFFLHYQNHAFVNKNNVRYHASVAVAPNQKW-VAHGRKDSRMGTLEEDEDFIQFK 127
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLV-------VTPLMEYVRQKR 167
K +L SAE K + AP++++V TPL+EYV+ K+
Sbjct: 128 K-------SLESAEADSSLKPS-FPLAPEDSVVTTEPVKTTTPLLEYVKAKQ 171
>gi|194672185|ref|XP_607889.4| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Bos
taurus]
gi|297481373|ref|XP_002692050.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Bos
taurus]
gi|296481608|tpg|DAA23723.1| TPA: UPF3 regulator of nonsense transcripts homolog A isoform 2
[Bos taurus]
Length = 479
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPPSL++ L H +++F F S YSRAY+ + P +
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F + +G++F++ K ++K +E
Sbjct: 125 LFRDRFDGYIFIDSKDPEYKKFLE 148
>gi|145349708|ref|XP_001419270.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579501|gb|ABO97563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 325
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 43/206 (20%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLL-ALFRDHF---NDRYNWFCFRPGKSSYKHQRY---- 53
+E +R K+VIR+LP +L++ L AL RD F ++ + W+ + GK+
Sbjct: 37 RETRERRKIVIRNLPATLAREALEEALRRDGFGALDETFEWWEYARGKARGGTGGATTTT 96
Query: 54 -------SRAYVELKKPAGVFEFAELLNGHVF-VNEK-----------GAQFKAIVEYAP 94
SR Y +++ V E +G F V + G + +A VEYAP
Sbjct: 97 TRRATTPSRFYATVRRGETVKALRERYDGATFRVRARDEEGRAIEGGGGEETRARVEYAP 156
Query: 95 SQRVPKPFSRK-----------DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKE 143
SQ P+ F + ++ EGTI +D DYL+FL + + + K
Sbjct: 157 SQWTPREFGERYATAGETAPAENALEGTIEEDEDYLKFLGALEAKKKANGATTGAATPKN 216
Query: 144 AELSGAPKETLVVTPLMEYVRQKRAA 169
AE AP+++ T L+E++ ++RAA
Sbjct: 217 AE--SAPRKS---TALLEFLWRQRAA 237
>gi|308811927|ref|XP_003083271.1| unnamed protein product [Ostreococcus tauri]
gi|116055150|emb|CAL57546.1| unnamed protein product [Ostreococcus tauri]
Length = 319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 107/261 (40%), Gaps = 64/261 (24%)
Query: 8 TKVVIRHLPPSLSQNDL-LALFRDHFN---DRYNWFCFRPGK--------SSYKHQRYSR 55
TK+VIR LP L++ L RD F+ ++W +R ++ + + S
Sbjct: 40 TKIVIRPLPSRLAREAFERTLARDGFDPPSAFFDWVGYRTVGRGGVDGRGTARRMRARSI 99
Query: 56 AYVELKKP-----------AGVFEF-AELLNGHVFVNEKGAQ-FKAIVEYAPSQRVPKPF 102
AYV K F A G V E G + +A VE APSQ P+ F
Sbjct: 100 AYVACKTTEIAKRVRDRYHGATFRVRARDSEGRVIEGEDGVEETRATVERAPSQWTPRTF 159
Query: 103 SRK-----------DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGA-- 149
+ ++ EGTI D +YL+F+ +E++ ER +GA
Sbjct: 160 GERYASTSGETNAVNALEGTIESDAEYLKFV------------SELESERTRTRTTGAVA 207
Query: 150 PKETLV---VTPLMEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTK----RG 202
PK+ T L+EY+ +KRAAE A + A G G ASKT T + G
Sbjct: 208 PKQESARRKSTALLEYIWKKRAAEERASKRAANGGKG-------ASKTKKTKQRGDADAG 260
Query: 203 SEKKKYILKDSAKNARRKDKS 223
K L D+A R K KS
Sbjct: 261 ENKSDKQLLDAAPKRRNKQKS 281
>gi|398392255|ref|XP_003849587.1| hypothetical protein MYCGRDRAFT_117814, partial [Zymoseptoria
tritici IPO323]
gi|339469464|gb|EGP84563.1| hypothetical protein MYCGRDRAFT_117814 [Zymoseptoria tritici
IPO323]
Length = 573
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSY---KHQRYSRAYVEL 60
R K+ IR LPP L+ + D + N + +W +R GK K SR Y+ L
Sbjct: 31 RLKLEIRRLPPGLTLTEFEETLGDEWKLGNGKVDWREYRQGKVKSGLGKFPEQSRCYIHL 90
Query: 61 KKPAGVFEFAELLNGHVFVNEKGA-------QFKAIVEYAPSQRVPKPFS-RKDSREGTI 112
+ V E VF ++ G + +AP QR P R D+R+GTI
Sbjct: 91 VNESMVKELDARFLAIVFHDKAGTYKHSDLKHLPPTIGFAPIQRTPLNVKVRADNRQGTI 150
Query: 113 FKDPDYLEFLKV----IAKPA 129
DP+++ FL+ I KPA
Sbjct: 151 DTDPEFIAFLEAETQPIVKPA 171
>gi|297694524|ref|XP_002824528.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Pongo
abelii]
Length = 443
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F E +G++F++ K ++K +E
Sbjct: 126 LFRERFDGYIFLDSKDPEYKKFLE 149
>gi|296189037|ref|XP_002742609.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2
[Callithrix jacchus]
Length = 439
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L H +++F F S YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F + +G+VF++ K ++K +E
Sbjct: 126 LFRDRFDGYVFLDSKDPEYKKFLE 149
>gi|426376077|ref|XP_004054835.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Gorilla
gorilla gorilla]
Length = 443
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F + +G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|367013556|ref|XP_003681278.1| hypothetical protein TDEL_0D04830 [Torulaspora delbrueckii]
gi|359748938|emb|CCE92067.1| hypothetical protein TDEL_0D04830 [Torulaspora delbrueckii]
Length = 365
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 31/182 (17%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR---DHFND--RYNWFCFR---PGKSSYKHQRYSRAYVE 59
K+V+R LPP LSQ+ L + F+D W+ R P K S + YSR Y+
Sbjct: 65 VKLVLRLLPPDLSQDQFLETIKPEVGEFSDCGVLEWYYVRGHYPQKLSTRPV-YSRCYLI 123
Query: 60 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV-------EYAPSQRVPKPFSRKDSREGTI 112
+ + EF + + FV++K + + P+ P P S + EGTI
Sbjct: 124 FESTESLAEFTKKVQPIKFVDDKDNATNVVTRVSTYVKRFVPNTVDPSPVSA--ALEGTI 181
Query: 113 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 172
+DP +L F+K S +I LE K+++ S A + ++ PL + V +++A ES
Sbjct: 182 TEDPLFLTFMK----------SLKI-LEEKKSDYSFA--DVSILKPLEKEVAKQKAVESE 228
Query: 173 AQ 174
Q
Sbjct: 229 IQ 230
>gi|18375525|ref|NP_542418.1| regulator of nonsense transcripts 3A isoform hUpf3pdelta [Homo
sapiens]
gi|27881818|gb|AAH23569.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Homo
sapiens]
gi|119629657|gb|EAX09252.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_d [Homo sapiens]
Length = 443
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F + +G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|402902531|ref|XP_003914154.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Papio
anubis]
Length = 430
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F + +G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|332264284|ref|XP_003281174.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Nomascus
leucogenys]
Length = 444
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR-----DHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK 62
+KVVIR LPP L++ L R D+F F S Y H YSRAY+ +
Sbjct: 69 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFE------IFAADLSLYPHL-YSRAYINFRN 121
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVE 91
P + F + +G++F++ K ++K +E
Sbjct: 122 PDDILLFRDRFDGYIFLDSKDPEYKKFLE 150
>gi|164663327|ref|XP_001732785.1| hypothetical protein MGL_0560 [Malassezia globosa CBS 7966]
gi|159106688|gb|EDP45571.1| hypothetical protein MGL_0560 [Malassezia globosa CBS 7966]
Length = 373
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 9 KVVIRHLPPSLSQNDL-------LALFRDHFNDR---YNWFCFRPGKSSYKHQR---YSR 55
KVV+R LPP L++N + L D + + F GK S + S
Sbjct: 13 KVVVRDLPPHLTENVFWEAVSPWVRLKADPVTNEPRTASRTAFVQGKRSEQASEVDTLSV 72
Query: 56 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR----VPKPFSRKDSREGT 111
AY+ V +F + GH+F + KG + A V+ A Q P + GT
Sbjct: 73 AYINFSDFKYVLDFVQNFQGHIFRDSKGQNYHAFVDNALFQSYMRWAPDKYGES---TGT 129
Query: 112 IFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES 171
I + +Y +F+ + P+ P+ L E + A + TPL+E+VR+++
Sbjct: 130 IQQTQEYKDFVAFLEAPSTLAPAPAPGLSASETDSDKAS----ITTPLVEFVRKQK---Q 182
Query: 172 GAQES 176
GAQE+
Sbjct: 183 GAQET 187
>gi|380791535|gb|AFE67643.1| regulator of nonsense transcripts 3A isoform hUpf3pdelta, partial
[Macaca mulatta]
Length = 233
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKGAQFKAIVE 91
F + +G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|365983412|ref|XP_003668539.1| hypothetical protein NDAI_0B02610 [Naumovozyma dairenensis CBS 421]
gi|343767306|emb|CCD23296.1| hypothetical protein NDAI_0B02610 [Naumovozyma dairenensis CBS 421]
Length = 441
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 31/182 (17%)
Query: 9 KVVIRHLPPSLSQNDLL--ALFRDHFNDRY-NWFCFRPGKSS--YKHQRYSRAYVELKKP 63
K+V+RHLPP+L+ + + + +D Y W+ + SS +K YSRAY
Sbjct: 113 KLVLRHLPPNLNSENFIKNVSLSKNIHDLYLEWYYIQGHYSSKLFKQPHYSRAYFIFDSI 172
Query: 64 AGVFEFAELLNGHVFVNEK----------GAQFKAIVEYAP--SQRVPKPFSR-----KD 106
+ +FA ++ F+++ + K+I E P S+ PK R KD
Sbjct: 173 VKLNKFASIVKNMKFIDDHENVMIPLLTLSSYIKSIEENVPERSRNNPKKHQRTKAPKKD 232
Query: 107 SREGTIFKDPDYLEFL-------KVIAKPAENL--PSAEIQLERKEAELSGAPKETLVVT 157
EGTI D + FL KVI +L P + +KEA+++ A K L +T
Sbjct: 233 ILEGTIENDDLFKMFLGRSKENDKVIDYGNFSLLRPVRKEVSRQKEADIAAAKKSELALT 292
Query: 158 PL 159
L
Sbjct: 293 KL 294
>gi|339246413|ref|XP_003374840.1| choline-phosphate cytidylyltransferase B [Trichinella spiralis]
gi|316971900|gb|EFV55622.1| choline-phosphate cytidylyltransferase B [Trichinella spiralis]
Length = 703
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 10 VVIRHLPPSLSQNDLLALF-----RDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA 64
V++R LPP +++ +LLA+ D F F P K +R Y++ K
Sbjct: 323 VILRRLPPYITEEELLAILSPLPPHDSFR-------FDPPFYP-KQWECARVYIQFKNIE 374
Query: 65 GVFEFAELLNGHVFVNEKGA------QFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDY 118
V +F + NG+VFV+ G+ + IVE AP + +++ GTI + +Y
Sbjct: 375 DVLQFRDTFNGYVFVDACGSNENDCNESIGIVEAAPYRENFGVVGKRNPLAGTIEQSEEY 434
Query: 119 LEFLKVIAKP--AENLPSAEIQL 139
L+F++ + P A + S E QL
Sbjct: 435 LKFVEKLNAPVKAPDTVSFESQL 457
>gi|388517151|gb|AFK46637.1| unknown [Lotus japonicus]
Length = 57
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG 44
L RTKVV+RHLPP+LSQ L+A F RYNW F P
Sbjct: 2 LDRTKVVLRHLPPTLSQASLVAQIDAAFLGRYNWLSFCPA 41
>gi|299470177|emb|CBN78205.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 475
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 42/199 (21%)
Query: 9 KVVIRHLPPSLSQNDLL-----ALFRDHFNDR---YNWFCFRPGKSSYKHQRYS-RAYVE 59
KVV+R LP + + + + A +R ++ F PGK S K R + AY+
Sbjct: 27 KVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLH 86
Query: 60 LKKPAGVFEFAELLNGHVFVNEKGAQFKA------------------------------I 89
+ + G L V+ A A
Sbjct: 87 IDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSGGKQSGGGVASTTATAGPT 146
Query: 90 VEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGA 149
VE AP Q++ K ++D R GTI KD Y F + PA+ LPSA++Q + +E+E
Sbjct: 147 VEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEE 206
Query: 150 PKETLVVTPLMEYVRQKRA 168
PK L++++R++ A
Sbjct: 207 PKPQ---NALLDFLRERGA 222
>gi|156348614|ref|XP_001621914.1| hypothetical protein NEMVEDRAFT_v1g143243 [Nematostella
vectensis]
gi|156208259|gb|EDO29814.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 49.7 bits (117), Expect = 0.004, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGV 66
KVVIR LPPSL + +L +++ D +++F F G+ S+ +SRAY+ K +
Sbjct: 1 KVVIRRLPPSLKEEEL----KEYLGDLPEHDFFYFVDGQMSFGPVLFSRAYINFKNQEDI 56
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEY 92
+F + +G F + KG + I ++
Sbjct: 57 IKFRDQFDGSSFFDNKGKKVFLISQH 82
>gi|169607309|ref|XP_001797074.1| hypothetical protein SNOG_06711 [Phaeosphaeria nodorum SN15]
gi|160701385|gb|EAT85362.2| hypothetical protein SNOG_06711 [Phaeosphaeria nodorum SN15]
Length = 456
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 47/207 (22%)
Query: 19 LSQNDLLALFRDHFN---DRYNWFCFRPGKSS---YKHQRYSRAYVELKKPAGVFEFAEL 72
L++++ + D + + +W +R GK S K R +RAY+ + K V +
Sbjct: 40 LTRSEFETMVGDEWKPGAGKVDWVNWRKGKISKDAAKPSRPARAYIHVTKQEHVPMLGDR 99
Query: 73 LNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIA 126
+ F + K Q A+V E+AP ++P R D+R+GTI +D ++ +FL+ +
Sbjct: 100 IRDSTFHDAAKSWQDSALVGPPTLEFAPFSKMPGGRRRNDNRQGTIDQDQEFKDFLESLT 159
Query: 127 KPAENLPSAEIQLERKEAELSGAPKET-----LVVTPLMEYVRQKRA------------- 168
P S AP +T + TPL+E +R+K+A
Sbjct: 160 NPITK---------------SAAPDDTQKQDKVKTTPLIEALREKKANKDKPNAKGRNAR 204
Query: 169 --AESGAQESLAVGRVGRRSRAASASK 193
A+ A E A G+ G+ + A + K
Sbjct: 205 GDAKEDATEKKASGKQGKENAATAGDK 231
>gi|114694183|ref|XP_001175337.1| PREDICTED: regulator of nonsense transcripts 3A-like [Pan
troglodytes]
Length = 411
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
+VVI LPP L++ L R Y F F S Y H YSRAY+ + P +
Sbjct: 39 QVVICRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHL-YSRAYINFRNPDDILL 96
Query: 69 FAELLNGHVFVNEKGAQFKAIVE 91
F + +G++F++ K ++K +E
Sbjct: 97 FRDRFDGYIFLDSKDPEYKKFLE 119
>gi|290994230|ref|XP_002679735.1| predicted protein [Naegleria gruberi]
gi|284093353|gb|EFC46991.1| predicted protein [Naegleria gruberi]
Length = 450
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 90 VEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAE 130
+EY P Q VPKP +KD R+GTIFKD YL FL+ + +P +
Sbjct: 309 IEYCPLQMVPKP-KKKDPRDGTIFKDEHYLRFLEQLKQPKD 348
>gi|170596366|ref|XP_001902739.1| Smg-4/UPF3 family protein [Brugia malayi]
gi|158589404|gb|EDP28411.1| Smg-4/UPF3 family protein [Brugia malayi]
Length = 206
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELK 61
K PL K+V+R LP +++ L + + F KSS + +SR Y K
Sbjct: 43 KMPL---KIVLRRLPAAMTWEQLKTQLSP--IPEFEFSEFVAAKSS-EGISFSRVYFVFK 96
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPD 117
K F E +G+VFV++KG + IVE AP+ +VP + +D + GTI D +
Sbjct: 97 KDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFKCGTIEADHE 156
Query: 118 YLEFL 122
Y +FL
Sbjct: 157 YKKFL 161
>gi|194377606|dbj|BAG57751.1| unnamed protein product [Homo sapiens]
Length = 146
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVVIR LPP L++ L R +++F F S YSRAY+ + P +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRP--LPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAELLNGHVFVNEKG 83
F + +G++F++ KG
Sbjct: 126 LFRDRFDGYIFLDSKG 141
>gi|25148417|ref|NP_741600.1| Protein SMG-4, isoform b [Caenorhabditis elegans]
gi|20069144|emb|CAD18872.2| Protein SMG-4, isoform b [Caenorhabditis elegans]
Length = 368
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA-GVF 67
KVV+R LP ++++++L + + F P S+ Y+ V + +
Sbjct: 10 KVVLRRLPKYMTEHEVLEQISPLPEEVIGTY-FHPANFSFDRCAYATLTVNFSEYCDSMM 68
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP---FSRKDSREGTIFKDPDYLEFLKV 124
EF +G++FV+ +G A+VE A +Q K ++D+R G I D YL+F K
Sbjct: 69 EFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYYLDFCKK 128
Query: 125 I 125
+
Sbjct: 129 L 129
>gi|148690218|gb|EDL22165.1| mCG3697, isoform CRA_a [Mus musculus]
Length = 159
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVF 67
+KVV+R LPP L++ L R H + +L+ P +
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLR----------------PLPAHDYFEVVAADLRNPDDIL 109
Query: 68 EFAELLNGHVFVNEKGAQFKAIVEYAPSQ 96
F + +G++F+ KG ++ A+VE+AP Q
Sbjct: 110 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQ 138
>gi|25148414|ref|NP_741601.1| Protein SMG-4, isoform a [Caenorhabditis elegans]
gi|13548374|emb|CAA94820.2| Protein SMG-4, isoform a [Caenorhabditis elegans]
Length = 329
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA-GV 66
KVV+R LP ++++++L + + F P S+ Y+ V + +
Sbjct: 9 VKVVLRRLPKYMTEHEVLEQISPLPEEVIGTY-FHPANFSFDRCAYATLTVNFSEYCDSM 67
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP---FSRKDSREGTIFKDPDYLEFLK 123
EF +G++FV+ +G A+VE A +Q K ++D+R G I D YL+F K
Sbjct: 68 MEFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYYLDFCK 127
Query: 124 VI 125
+
Sbjct: 128 KL 129
>gi|224119920|ref|XP_002331095.1| predicted protein [Populus trichocarpa]
gi|222872823|gb|EEF09954.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 15/109 (13%)
Query: 160 MEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSA 214
ME++RQKRAA+SG + L+ G+ RR A + SS+++KRGSEKK+ Y+L+D+
Sbjct: 1 MEFIRQKRAAKSGPRRILSNGKPSRR--AGGSGSPSSSSSKRGSEKKRASTTMYVLRDTV 58
Query: 215 KNARRKDKSTFTVVAKREDQP-------ASSSGKETSASET-ICGVEGS 255
K K+KS + V K +D+ S SG E S ET + G+ G+
Sbjct: 59 KGTSGKEKSIYAQVPKLDDRQLSKAVTLGSGSGTEVSEEETAVSGITGT 107
>gi|151943350|gb|EDN61663.1| NMD pathway component [Saccharomyces cerevisiae YJM789]
gi|207345166|gb|EDZ72074.1| YGR072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 387
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ I + EN
Sbjct: 207 EDEIFKTFMNSIKQLNEN 224
>gi|349578284|dbj|GAA23450.1| K7_Upf3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 387
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS-REGTIF 113
R + + + A + F++ K ++ +P + S+KDS GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDSALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 207 EDEIFKTFMNSMKQLNEN 224
>gi|365760613|gb|EHN02321.1| Upf3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 387
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ +D A+ R ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADDFFAILRGANNDGDLKQDIQDKFKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS-QRVPKPFSRKDSREGTIF 113
R + + + A + F++ K + +P ++V + R + EGTI
Sbjct: 147 RCNFLFDSLSDLKKCAAFIKSCKFIDNKDNVTIPDLNLSPYVKKVTQKSKRDSALEGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 207 EDEIFKTFMNSMKQLDEN 224
>gi|302419035|ref|XP_003007348.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352999|gb|EEY15427.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 593
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 43 PGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQ 96
P KSS R R Y+ +KK + E E++ + + K + EY +
Sbjct: 47 PAKSS----RPGRLYLHVKKRESLAELDEIVQTRTWEDAKLTHNNPCLVGPPSLEYCIYK 102
Query: 97 RVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV 156
++P R D+R+GTI +DP+++ +L + P E + + P +
Sbjct: 103 KIPGARKRSDARQGTIDQDPEFMSYLLSLTNPET---EKEGETGEDPSAGESKPDTKVTT 159
Query: 157 TPLMEYVRQ 165
TPL+EY+++
Sbjct: 160 TPLIEYIKE 168
>gi|190406907|gb|EDV10174.1| nonsense-mediated mRNA decay protein 3 [Saccharomyces cerevisiae
RM11-1a]
Length = 387
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSEWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 207 EDEIFKTFMNSMKQLNEN 224
>gi|323304840|gb|EGA58598.1| Upf3p [Saccharomyces cerevisiae FostersB]
Length = 334
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 31/168 (18%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDBGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS-REGTIF 113
R + + + A + F++ K ++ +P + S+KDS GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDSALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN----------LPSAE------IQLERKEAE 145
+D + F+ + + EN L S E I+LE K AE
Sbjct: 207 EDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEKEFSKSIELENKIAE 254
>gi|341879389|gb|EGT35324.1| CBN-SMG-4 protein [Caenorhabditis brenneri]
Length = 366
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA-G 65
+ KVV+R LP ++++++L + F FRP ++ Y+ + +
Sbjct: 13 QVKVVLRRLPKYMTESEVLEQISPLPAEVIETF-FRPANFAFDRAAYATLTLVFSEYCDS 71
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ---RVPKPFSRKDSREGTIFKDPDYLEFL 122
+ +F +G++FV+ +G A+VE A +Q + + ++D+R G + D YL+F
Sbjct: 72 LMDFERRFDGYIFVDSRGNDSTAVVEAAVNQHFSKCDRARMKQDTRVGALDTDKYYLDFC 131
Query: 123 K 123
K
Sbjct: 132 K 132
>gi|6321509|ref|NP_011586.1| Upf3p [Saccharomyces cerevisiae S288c]
gi|1351373|sp|P48412.1|UPF3_YEAST RecName: Full=Nonsense-mediated mRNA decay protein 3; AltName:
Full=Up-frameshift suppressor 3
gi|1051102|gb|AAC41671.1| up-frameshift suppressor [Saccharomyces cerevisiae]
gi|1323099|emb|CAA97074.1| UPF3 [Saccharomyces cerevisiae]
gi|285812266|tpg|DAA08166.1| TPA: Upf3p [Saccharomyces cerevisiae S288c]
gi|392299326|gb|EIW10420.1| Upf3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 387
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 207 EDEIFKTFMNSMKQLNEN 224
>gi|51012951|gb|AAT92769.1| YGR072W [Saccharomyces cerevisiae]
Length = 387
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 207 EDEIFKTFMNSMKQLNEN 224
>gi|256269078|gb|EEU04414.1| Upf3p [Saccharomyces cerevisiae JAY291]
Length = 387
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 207 EDEIFKTFMNSMKQLNEN 224
>gi|388581361|gb|EIM21670.1| hypothetical protein WALSEDRAFT_11010, partial [Wallemia sebi CBS
633.66]
Length = 62
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 54 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
SRAY+ K+ A + F +GH+ + +A +E+AP QR P+P ++D R+GTI
Sbjct: 7 SRAYITFKEYAQLLSFHAGFDGHL-------ESRASIEFAPYQRTPQPKQKQDQRQGTI 58
>gi|367006657|ref|XP_003688059.1| hypothetical protein TPHA_0M00500 [Tetrapisispora phaffii CBS 4417]
gi|357526366|emb|CCE65625.1| hypothetical protein TPHA_0M00500 [Tetrapisispora phaffii CBS 4417]
Length = 389
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND------RYNWFCFRPGKSS---YKHQRYSRAYVE 59
K+V++ LPP+L++ + + ND N F F GK S + YSR+Y+
Sbjct: 67 KLVLQSLPPALTETEFWDAVKSVVNDTNEYQINLNSFYFVQGKLSDKPFHDPVYSRSYIM 126
Query: 60 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV-------PKPFSRKDSREGTI 112
K + +FA + F + A ++ +P R KP + K EGTI
Sbjct: 127 FKDMENLRKFALKIQDVTFTDANNDSSVASIKISPYNRSYNSALEKKKPAANKKVLEGTI 186
Query: 113 FKDPDYLEF---LKVIAKPAENLPSAEIQL 139
DP + F +K++A+ + + S EI L
Sbjct: 187 KDDPLFKAFVQSMKIMAESDQYMYS-EINL 215
>gi|324513196|gb|ADY45432.1| Regulator of nonsense transcripts 3B [Ascaris suum]
Length = 447
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFE 68
K+V+R LP ++ +L ++ F G + K + RAY K +
Sbjct: 23 KIVLRRLPRGMTWKELQMQLDPLPETEFSQFVA-VGVDAPKIA-FPRAYFVFKNDEDIIA 80
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPK----PFSRKDSREGTIFKDPDYLEFL-- 122
F + NG+VF++ +G++ +VE AP+ +V + ++D + TI + +Y +F+
Sbjct: 81 FRDRFNGYVFIDSQGSESMGLVELAPNPKVSRHKLEDSKKRDKKCATIDTEVEYKKFVDD 140
Query: 123 -----KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
K + P E EI+++ K A L A +E TPL +Y+ +K
Sbjct: 141 RENPPKPVIVPIEQR-IKEIEMKEKNA-LENAVQE----TPLTQYMIRK 183
>gi|259146575|emb|CAY79832.1| Upf3p [Saccharomyces cerevisiae EC1118]
Length = 387
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGHYSSKVLKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN 131
+D + F+ I + EN
Sbjct: 207 EDEIFKTFMNSIKQLNEN 224
>gi|170596368|ref|XP_001902740.1| Smg-4/UPF3 family protein [Brugia malayi]
gi|158589405|gb|EDP28412.1| Smg-4/UPF3 family protein [Brugia malayi]
Length = 176
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELK 61
K PL K+V+R LP +++ L + + F KSS + +SR Y K
Sbjct: 43 KMPL---KIVLRRLPAAMTWEQLKTQLSP--IPEFEFSEFVAAKSS-EGISFSRVYFVFK 96
Query: 62 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP 99
K F E +G+VFV++KG + IVE AP+ +VP
Sbjct: 97 KDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVP 134
>gi|150863913|ref|XP_001382558.2| hypothetical protein PICST_67017 [Scheffersomyces stipitis CBS
6054]
gi|149385169|gb|ABN64529.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 453
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 3 EPLQRTKVVIRHLPPSLSQN---DLLALFRD----HFNDRYNWFCFRPGKSSYKHQRYSR 55
E KVV+R LPP+L +N D L+ F D + +Y P K ++ YSR
Sbjct: 41 ESYSNVKVVLRLLPPTLDENGFYDQLSAFYDVNSPNITSKYYVKGSYPAK-PFEAPIYSR 99
Query: 56 AYVELKKPAGVFEFAELLNGHVFVN-EKGAQFKAIVEYAPSQRVP------KPFSRKDSR 108
AY+ V F +NG FV E F +VE A ++P + + K S
Sbjct: 100 AYITFHTSDDVVFFMSSVNGKPFVEPETEDSFTPLVERAIFNKMPAKDGKEESITEKSSV 159
Query: 109 EGTIFKDPDYLEFLKVI 125
EG+ + EF+K +
Sbjct: 160 EGSEL----FQEFVKFL 172
>gi|358422817|ref|XP_003585492.1| PREDICTED: regulator of nonsense transcripts 3B-like, partial [Bos
taurus]
Length = 123
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
+KVVIR LPP+L++ L ++H +++F F +S Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED 106
Query: 66 VFEFAELLNGHVFVNEK 82
+ F + +G+VF++ K
Sbjct: 107 IILFRDRFDGYVFLDNK 123
>gi|341881193|gb|EGT37128.1| hypothetical protein CAEBREN_00499 [Caenorhabditis brenneri]
Length = 330
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPA-G 65
+ KVV+R LP ++++++L + F FRP ++ Y+ + +
Sbjct: 13 QVKVVLRRLPKYMTESEVLEQISPLPAEVIETF-FRPANFAFDRAAYATLTLVFSEYCDS 71
Query: 66 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPK---PFSRKDSREGTIFKDPDYLEFL 122
+ +F +G++FV+ +G A+VE A +Q K ++D+R G + D YL+F
Sbjct: 72 LLDFERRFDGYIFVDSRGNDSTAVVEAAVNQHFSKCDRARMKQDTRVGALDTDKYYLDFC 131
Query: 123 KVI 125
K +
Sbjct: 132 KKL 134
>gi|238604948|ref|XP_002396333.1| hypothetical protein MPER_03460 [Moniliophthora perniciosa FA553]
gi|215468687|gb|EEB97263.1| hypothetical protein MPER_03460 [Moniliophthora perniciosa FA553]
Length = 100
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 54 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 113
SRAYV K + F +G NE +A+VE+AP Q+VP + D+R TI
Sbjct: 9 SRAYVAFKTEEQLTTFHREYDG----NES----QAVVEFAPYQKVPSDKKKLDARNATIE 60
Query: 114 KDPDYLEFLKVIAKP 128
+D DY+ F++ + +P
Sbjct: 61 QDEDYISFVQSLNQP 75
>gi|323333512|gb|EGA74906.1| Upf3p [Saccharomyces cerevisiae AWRI796]
Length = 316
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 31/168 (18%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S +K+ YS
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYS 146
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 147 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 206
Query: 114 KDPDYLEFLKVIAKPAEN----------LPSAE------IQLERKEAE 145
+D + F+ + + EN L S E I+LE K AE
Sbjct: 207 EDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEKEFSKSIELENKIAE 254
>gi|452822479|gb|EME29498.1| hypothetical protein Gasu_31370 [Galdieria sulphuraria]
Length = 342
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD--HFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAG 65
KV +R+LPPS S++D F H W F PG + + + S A KK
Sbjct: 110 VKVWVRNLPPSYSEDDFHMAFESAGHSFSLVAWCQFYPGCPASRKETLSSA----KKGFA 165
Query: 66 VFEFAELLNGHVFVNE----------KGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKD 115
F L + F E G ++ V A +VP F +DS TIF+D
Sbjct: 166 YLAFQSLEDALGFEKEYSGLKLKDTNNGVEYGIRVFRALFPKVPSKFRCRDSCVATIFED 225
Query: 116 PDYLEFLKVIAKPAENLPSAEIQLERKEAELS 147
D+ F E+L + + E+ E LS
Sbjct: 226 ADFRRF-------EESLNGTQDEREQSEGNLS 250
>gi|255712613|ref|XP_002552589.1| KLTH0C08426p [Lachancea thermotolerans]
gi|238933968|emb|CAR22151.1| KLTH0C08426p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 9 KVVIRHLPPSLSQNDLL---------ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVE 59
K+V+R LPP+L + + H DRY +F + +K YSRAY+
Sbjct: 66 KLVLRQLPPNLMEEQFFDTVSAAVGSDFLQQHVEDRY-FFKGHFSRKPFKLPTYSRAYMT 124
Query: 60 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS-QRVPKPFSR-----KDSREGTIF 113
+ + FA+ ++ FV++ V +P +++ S+ KD EGTI
Sbjct: 125 FNEAEKLQFFAKSVSAVTFVDDTNNSMVPTVTLSPYLKKLRTEESKGLRKTKDLIEGTIE 184
Query: 114 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES 171
+D + FLK + +L Q E + A+LS V+ PL + +R+K E+
Sbjct: 185 QDRTFQTFLKSL-----DLLENHKQ-EYQYADLS-------VIMPLEKALRRKLEEEA 229
>gi|149245801|ref|XP_001527377.1| hypothetical protein LELG_02206 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449771|gb|EDK44027.1| hypothetical protein LELG_02206 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 418
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFC-FRPGKSSYKHQ-----RYSRAYVELKK 62
K+V+R LPP+LS++D L + + N K SY + YSRAYV K
Sbjct: 49 KLVVRLLPPALSESDFLTQLEGLYPQKENKIVRHYYVKGSYPQKPFELPVYSRAYVSFKN 108
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV 98
A + EF L+ F +EK + I+E + Q++
Sbjct: 109 VADMNEFTGLVRDKSFHDEKDSTI-PIIEKSLFQKM 143
>gi|365765670|gb|EHN07177.1| Upf3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 342
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKH 50
++ K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S K+
Sbjct: 38 MKEFKLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGHYSSKVXKN 97
Query: 51 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 109
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 98 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 157
Query: 110 GTIFKDPDYLEFLKVIAKPAEN 131
GTI +D + F+ + + EN
Sbjct: 158 GTIEEDEIFKTFMNSMKQLNEN 179
>gi|68479205|ref|XP_716408.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
gi|68479334|ref|XP_716346.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
gi|46438012|gb|EAK97350.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
gi|46438075|gb|EAK97412.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
Length = 407
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 9 KVVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELKK 62
K VIR LPPSL++++ L A + + + F + G K++++ YSRAYV
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKICQFYYIQGHYPKTNFEVPIYSRAYVNFSN 109
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV 90
EF L F NE F +I+
Sbjct: 110 QHDSLEFLNFLKEKPFENE----FDSII 133
>gi|444321012|ref|XP_004181162.1| hypothetical protein TBLA_0F01000 [Tetrapisispora blattae CBS 6284]
gi|387514206|emb|CCH61643.1| hypothetical protein TBLA_0F01000 [Tetrapisispora blattae CBS 6284]
Length = 473
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 22/136 (16%)
Query: 9 KVVIRHLPPSLSQNDLL-----ALFRDHFNDRYNWF--CFRPGKSS---YKHQRYSRAYV 58
K+V+R LPP+L++ + AL +D F +++N F + G+S+ + +SRAY
Sbjct: 177 KLVVRLLPPNLTEEQFIETIEPALGKD-FKEKFNIFQSYYVQGESNSTPFHGPVHSRAYF 235
Query: 59 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP--------SQRVPKPFSRKDSR-- 108
L+ + + E++ F+++K +A + +P S + KP S+ +S+
Sbjct: 236 ILENMEDLKKLGEIIQKLEFIDDKDNLTRASLLLSPYVKDLVDESLLIKKP-SKANSKVG 294
Query: 109 EGTIFKDPDYLEFLKV 124
EGT+ DP + FLK
Sbjct: 295 EGTLQNDPLFKTFLKA 310
>gi|401625662|gb|EJS43660.1| upf3p [Saccharomyces arboricola H-6]
Length = 386
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND------------RYNWFCFRPGKSS---YKHQRY 53
K+VIR LPP+L+ +D + R+ ND +Y+ +CF G S +K+ Y
Sbjct: 86 KLVIRLLPPNLTADDFFTMLRNA-NDGTEDKEDIQDKLKYSDWCFFEGHYSTKVFKNLTY 144
Query: 54 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS-REGTI 112
SR + + + A + F++ K ++ +P + S++DS EGTI
Sbjct: 145 SRCNFLFDSLSDLEKCAAFIKTCKFIDNKDNVTIPDLKLSPYVKKFTQTSKRDSVLEGTI 204
Query: 113 FKDPDYLEFLKVIAKPAEN 131
+D + F+ + + EN
Sbjct: 205 QEDEIFKTFMNSVKQLNEN 223
>gi|238878415|gb|EEQ42053.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 407
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 9 KVVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELKK 62
K VIR LPPSL++++ L A + + + F + G K++++ YSRAYV
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKICQFYYIQGHYPKTNFEVPIYSRAYVNFSN 109
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV 90
EF L F NE F +I+
Sbjct: 110 QHDSLEFLNFLKEKPFENE----FDSII 133
>gi|308484388|ref|XP_003104394.1| hypothetical protein CRE_22805 [Caenorhabditis remanei]
gi|308258042|gb|EFP01995.1| hypothetical protein CRE_22805 [Caenorhabditis remanei]
Length = 514
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRY-SRAYVELKKPAGV 66
KV++R LP +++ +++ + + F P ++ H Y S V + +
Sbjct: 9 VKVMLRRLPKYMTEKEVMEQISPLPEEVVGTY-FYPANFAFDHASYASLTLVFSEYSDSL 67
Query: 67 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP---FSRKDSREGTIFKDPDYLEFL- 122
+F +G++FV+ +G A+VE A +Q K +D+R G I D +LEF
Sbjct: 68 IDFERRFDGYIFVDSRGNDSSAVVEAAVNQNFSKCDRGRMTEDTRVGAILNDKYFLEFCE 127
Query: 123 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 166
K+ + A + + E Q+ + + + TPL++Y K
Sbjct: 128 KLNLEKAVPIMTLEQQIRKLNQPEDARTQIDRLETPLVKYFIDK 171
>gi|68010359|ref|XP_670717.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486237|emb|CAH93914.1| conserved hypothetical protein [Plasmodium berghei]
Length = 120
Score = 42.0 bits (97), Expect = 0.83, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 53 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 112
+SR Y+ K EF + +G F + G ++KA V +AP+Q + +R D+R T+
Sbjct: 5 HSRIYLSFKDYMKTEEFIKTQDGKYFYDTNGVKYKANVTFAPNQTIIHK-NRIDNRNNTL 63
Query: 113 FKDPDYLEFLKVIAKPAE 130
DP +L+ + + P E
Sbjct: 64 ESDPYFLKCCEEMHNPIE 81
>gi|167574995|ref|ZP_02367869.1| aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
protein [Burkholderia oklahomensis C6786]
Length = 756
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 72/193 (37%), Gaps = 27/193 (13%)
Query: 315 GRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSF 374
GRL+ +L + SV VQP+ N PL + PN HVTNN SP
Sbjct: 484 GRLVPATMLEHPFTPAPSVPMVQPEGG----GDRNAIPL---YTFPNLHVTNNFSPTMPL 536
Query: 375 DGNTKRS--------SDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQA 426
+ + RS S + F ++ H +++ R K D PR D
Sbjct: 537 NTSAMRSLGAHMNVFSIESFIDELAHA----AQEDPVAFRLKHMED-----PRARDAIAL 587
Query: 427 NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGRRAATN--- 483
R +P + V G+ K+ M+Y + V+I+ G A +
Sbjct: 588 AARRFGWPRPPRKPGRGVGFAFGKYKNLMAYVAMAVEISVARETGQVVLEHAEVAVDSGQ 647
Query: 484 ITKDDGCINMIEG 496
I DG N IEG
Sbjct: 648 IVNPDGVRNQIEG 660
>gi|448081335|ref|XP_004194864.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
gi|359376286|emb|CCE86868.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
Length = 321
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN------WFC--FRPGKSSYKHQRYSRAY 57
++ K+ +R LP +L+ + + + R N ++ F P KS Y+ +SRAY
Sbjct: 20 EKLKLTVRLLPAALTWEQFTSQLEKYTDIRSNGGITNEYYVQGFYP-KSPYELPSFSRAY 78
Query: 58 VELKKPAGVFEFAELLNGHVFVNEK-GAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKD 115
+ K A + +F E + FV EK G Q +E A ++P P S+ + I KD
Sbjct: 79 LLFKNTALMRQFIEQVKDKPFVEEKTGNQMMPQLEKALYSKMPTPESKLQKPANKPIEKD 138
Query: 116 PDYLEFLKVI--AKPAENLPSAE-IQLERKEAELSGA 149
+ EFL + KP + L +++ I+ +E + +GA
Sbjct: 139 HIFKEFLACLEDGKPFDLLETSQRIRTSAREKKKNGA 175
>gi|374293762|ref|YP_005040785.1| putative diguanylate cyclase protein, sensory box/GGDEF domain
[Azospirillum lipoferum 4B]
gi|357427165|emb|CBS90104.1| putative diguanylate cyclase protein, sensory box/GGDEF domain
[Azospirillum lipoferum 4B]
Length = 1004
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 374 FDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSS 433
+DG R+ DR A ++ + A E RTR+ D PD WT R D G R++
Sbjct: 471 YDGEELRAHADRIAAELGCAAPAGFEALVARTRDGDLPDSGEWTGLRKD-----GARIAL 525
Query: 434 SQPTQLLSDSVEVTRGEMKDDM 455
S T +L DS RG + M
Sbjct: 526 SAATSVLRDSGGAVRGYLTVVM 547
>gi|448085816|ref|XP_004195953.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
gi|359377375|emb|CCE85758.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
Length = 320
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND---------RYNWFCFRPGKSSYKHQRYSRA 56
++ K+ +R LP +L+ + D + D Y F P KS Y+ +SRA
Sbjct: 20 EKLKLTVRLLPAALTWEQFTSQL-DKYTDIRSKGGVTNEYYVQGFYP-KSPYELPTFSRA 77
Query: 57 YVELKKPAGVFEFAELLNGHVFVNEK-GAQFKAIVEYAPSQRVPKPFSRKDSREGT--IF 113
Y+ K + + EF E + F+ EK G Q +E A ++P P S K S+ G I
Sbjct: 78 YLLFKNSSLMREFIEQVKDKPFIEEKTGNQMAPQLEKALYSKMPTPES-KLSKPGNKAIE 136
Query: 114 KDPDYLEFLKVI 125
KD + EFL +
Sbjct: 137 KDHIFKEFLACL 148
>gi|241950067|ref|XP_002417756.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223641094|emb|CAX45469.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 472
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 9 KVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPG---KSSYKHQRYSRAYVELKK 62
K VIR LPPSL+++D LA + + + F + G K++++ YSRAY+
Sbjct: 64 KFVIRLLPPSLTESDFLNQLATYYPYHASKICQFYYIQGHYPKTNFEIPIYSRAYINFSN 123
Query: 63 PAGVFEFAELLNGHVFVNEKGAQFKAIV 90
EF L F +E F +I+
Sbjct: 124 YNDSLEFLNFLKDKSFEDE----FDSII 147
>gi|323348592|gb|EGA82836.1| Upf3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 277
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 31/168 (18%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSS---YKHQRYS 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G S K+ YS
Sbjct: 48 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGHYSSKVXKNSTYS 107
Query: 55 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SREGTIF 113
R + + + A + F++ K ++ +P + S+KD + GTI
Sbjct: 108 RCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALVGTIE 167
Query: 114 KDPDYLEFLKVIAKPAEN----------LPSAE------IQLERKEAE 145
+D + F+ + + EN L S E I+LE K AE
Sbjct: 168 EDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEKEFSKSIELENKIAE 215
>gi|402580308|gb|EJW74258.1| hypothetical protein WUBG_14834, partial [Wuchereria bancrofti]
Length = 104
Score = 40.8 bits (94), Expect = 1.9, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 69 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPDYLEFL 122
F E +G+VFV++KG + IVE AP+ +VP + +D + GTI D +Y +FL
Sbjct: 9 FKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFKCGTIEADHEYKKFL 66
>gi|66801645|ref|XP_629748.1| hypothetical protein DDB_G0292240 [Dictyostelium discoideum AX4]
gi|60463136|gb|EAL61330.1| hypothetical protein DDB_G0292240 [Dictyostelium discoideum AX4]
Length = 358
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 11 VIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEF 69
VIR+LP +L Q AL ++ D + G S F
Sbjct: 8 VIRNLPWNLEQEKFQALIATSYSPDTVKIIEYNQGTKSSDS------------------F 49
Query: 70 AELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPA 129
E ++ FVN KG + AIVE AP ++ +K++R GTI Y FLK + P
Sbjct: 50 LEFMDNRPFVNNKGIEELAIVESAPF-KIDTTQVKKNNRMGTIESSGTYQAFLKQLDAPT 108
Query: 130 ENLPSAEIQLERKE 143
+++ + + E+ E
Sbjct: 109 DSVQNFNVPKEQTE 122
>gi|353236383|emb|CCA68379.1| hypothetical protein PIIN_02244 [Piriformospora indica DSM 11827]
Length = 107
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND---RYNWFCFRPGKSSYKHQRYS------RA 56
QR K V+R LPP+L ++ N+ + WF R G + K R+S RA
Sbjct: 17 QRIKAVVRKLPPNLPEDVFWKSCLQWVNENTVKDKWF--RQG--NLKGARFSAASIFSRA 72
Query: 57 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKA 88
Y+ K P + F++ +GH F +++G F A
Sbjct: 73 YIAFKTPEELATFSQNYDGHAFRDKQGMHFTA 104
>gi|254578402|ref|XP_002495187.1| ZYRO0B05412p [Zygosaccharomyces rouxii]
gi|238938077|emb|CAR26254.1| ZYRO0B05412p [Zygosaccharomyces rouxii]
Length = 351
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNW----FCFRPGKSS---YKHQRYSRAYVEL 60
K+++R LPP+L+++ L + D +W + + G + + YSR Y
Sbjct: 67 VKLILRLLPPTLTKDQFLETLKPVVGDLSSWQLLRWYYVQGYYTSKIFAEPVYSRCYFIF 126
Query: 61 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSR-----EGTIFKD 115
+ FA+L+ FV++K KA+++ + +RK SR EG++ +D
Sbjct: 127 SNMDQLKHFAQLVEPLTFVDDKDNSAKAVLKLSSYCESYDDDNRKPSRSSEALEGSLDQD 186
Query: 116 PDYLEFL 122
+ F+
Sbjct: 187 IFFQTFM 193
>gi|340939282|gb|EGS19904.1| hypothetical protein CTHT_0043970 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 640
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 281 HVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQ 340
H PD + + R + PV SP +P + G L+R++ L + + Q +S+ +
Sbjct: 327 HNPDGHISELRATLPVTIFISPNMP-----LDEHGNLVRQLPLAHVSNQAESMAPPSYSE 381
Query: 341 KMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEK 400
M + E+ +P+ P +P G ++ +SP+ G+++ S + A V HG+
Sbjct: 382 HMLDQLYEDIEPV--PLHTPTGCLSGINSPL---HGHSRTPSTENLA-AVFHGTAISPAL 435
Query: 401 QEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSK 460
R ++ R + S++S A G S+ P S +TR + + GS
Sbjct: 436 LTSRLQSMSLEQRHRNSSWNSNLSAAGGMSRHSTPP-----GSAPLTRHPSAEHHTPGSA 490
Query: 461 T 461
T
Sbjct: 491 T 491
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,127,924,857
Number of Sequences: 23463169
Number of extensions: 348627932
Number of successful extensions: 883013
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 804
Number of HSP's that attempted gapping in prelim test: 879782
Number of HSP's gapped (non-prelim): 2744
length of query: 523
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 376
effective length of database: 8,910,109,524
effective search space: 3350201181024
effective search space used: 3350201181024
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 79 (35.0 bits)