BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009861
         (523 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D2U|A Chain A, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
 pdb|3D2U|E Chain E, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
          Length = 281

 Score = 36.2 bits (82), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 25/185 (13%)

Query: 311 TYSVTGIYPDSRNFSIQLKGADNYRRNPNGTF----HLNQSLPFYFIALANLGNSTFYFS 366
           T +V GI+     F+  ++ +D      NGT     +++ + P Y       G+  F  +
Sbjct: 18  TLTVVGIFDGQHFFTYHVQSSDKASSRANGTISWMANVSAAYPTYLDGERAKGDLIFNQT 77

Query: 367 YKNAYEVEIGWNPPPEPTRTSPRDCEDWPHSTCKLTDNGETRCLCNETFRWDGNALKCIQ 426
            +N  E+EI      +   T       W H  C  T+NG +     E F WDG  L  ++
Sbjct: 78  EQNLLELEIALGYRSQSVLT-------WTHE-CNTTENG-SFVAGYEGFGWDGETLMELK 128

Query: 427 RKNGNYSLKGHDICATGKNVPVEKGRIGFPSNGWPDRAENKPGGDSTQQVDAFNGRKKQQ 486
                ++   ++I    +      G+I           +N   GD+T Q +   G    Q
Sbjct: 129 DNLTLWTGPNYEISWLKQQKTYIDGKI-----------KNISEGDTTIQRNYLKGNCT-Q 176

Query: 487 WTLIF 491
           W++I+
Sbjct: 177 WSVIY 181


>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
           Delta-Aminotransferase
 pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
           Delta-Aminotransferase
 pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
           Delta-Aminotransferase
 pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
           Delta-Aminotransferase
 pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
           Aminotransferase
 pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
           Aminotransferase
 pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
           Aminotransferase
 pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
           Aminotransferase
          Length = 422

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 357 NLGNSTFYFSYKNAYEVEIGWNPPPEPTRTSPRDCEDWPHSTCKLTDNGETRCLCNETFR 416
           +LG    Y +    Y+  +  N   E + T+ + C  W +   K+ +N     +CN  F 
Sbjct: 89  SLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKWGYEVKKIPENSAKIIVCNNNF- 147

Query: 417 WDGNALKCI 425
             G  L C+
Sbjct: 148 -SGRTLGCV 155


>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
 pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With An Aglycone Dimboa
 pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
          Length = 564

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 369 NAYEVEIGWNPPPEPTRTSPRDCEDWPHSTCKLTDNGETRCLCNETFRWDGNALKCIQRK 428
           +AY++E  WN   +   T    C  +P      T NG+        +  D  ALK +  K
Sbjct: 85  SAYQIEGAWNEDGKGPSTWDHFCHTYPERISDGT-NGDVAANSYHMYEEDVKALKDMGMK 143

Query: 429 NGNYSLKGHDICATGKNVPVEKG 451
              +S+    I   G   P +KG
Sbjct: 144 VYRFSISWSRILPNGTGKPNQKG 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,086,954
Number of Sequences: 62578
Number of extensions: 845661
Number of successful extensions: 1345
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 8
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)