Query 009861
Match_columns 523
No_of_seqs 202 out of 1400
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 18:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00954 S_locus_glycop: S-loc 99.9 1.2E-22 2.7E-27 178.8 11.0 105 75-189 1-110 (110)
2 PF08276 PAN_2: PAN-like domai 99.5 2.9E-14 6.4E-19 114.8 5.5 64 209-280 1-66 (66)
3 PF01453 B_lectin: D-mannose b 99.4 7.8E-14 1.7E-18 124.0 1.6 49 1-50 60-114 (114)
4 cd01098 PAN_AP_plant Plant PAN 99.4 1.2E-12 2.6E-17 108.3 6.9 77 209-296 5-84 (84)
5 cd00129 PAN_APPLE PAN/APPLE-li 99.3 2.3E-12 5.1E-17 107.8 6.2 72 209-295 5-80 (80)
6 smart00473 PAN_AP divergent su 98.2 3.4E-06 7.4E-11 68.0 6.5 71 213-294 4-77 (78)
7 cd01100 APPLE_Factor_XI_like S 96.8 0.0013 2.7E-08 53.7 3.4 48 219-276 10-58 (73)
8 smart00108 B_lectin Bulb-type 93.5 0.6 1.3E-05 41.0 9.3 17 126-142 87-103 (114)
9 cd00028 B_lectin Bulb-type man 92.1 0.44 9.6E-06 42.1 6.5 20 3-22 30-49 (116)
10 cd00028 B_lectin Bulb-type man 91.9 1.2 2.6E-05 39.3 9.1 17 126-142 88-104 (116)
11 smart00108 B_lectin Bulb-type 91.0 0.65 1.4E-05 40.8 6.3 76 2-78 28-112 (114)
12 PF01453 B_lectin: D-mannose b 89.5 1.2 2.6E-05 39.6 6.7 50 2-77 27-78 (114)
13 PF00024 PAN_1: PAN domain Thi 89.1 0.4 8.7E-06 38.4 3.2 54 214-277 3-58 (79)
14 PF08277 PAN_3: PAN-like domai 83.3 5.5 0.00012 31.7 7.0 39 231-281 18-57 (71)
15 smart00605 CW CW domain. 82.5 3.7 8E-05 35.0 5.9 55 231-296 20-75 (94)
16 PF07645 EGF_CA: Calcium-bindi 81.0 1.7 3.7E-05 31.7 2.8 28 396-424 15-42 (42)
17 smart00223 APPLE APPLE domain. 80.2 1.8 3.9E-05 36.2 3.2 38 231-275 20-57 (79)
18 PF14295 PAN_4: PAN domain; PD 76.6 1.9 4.2E-05 31.7 2.1 37 231-272 14-50 (51)
19 PHA03264 envelope glycoprotein 69.6 4.8 0.0001 43.0 3.7 55 458-518 336-396 (416)
20 cd00053 EGF Epidermal growth f 69.1 3.6 7.7E-05 27.3 1.8 29 159-187 2-31 (36)
21 PF07645 EGF_CA: Calcium-bindi 68.9 1.5 3.3E-05 31.9 -0.1 31 157-187 3-35 (42)
22 PF01683 EB: EB module; Inter 68.1 6.7 0.00014 29.6 3.3 34 378-419 16-49 (52)
23 PF12947 EGF_3: EGF domain; I 67.9 2.8 6.2E-05 29.9 1.1 29 389-420 6-34 (36)
24 cd01099 PAN_AP_HGF Subfamily o 64.7 14 0.00031 30.5 4.9 37 231-277 23-61 (80)
25 PF05454 DAG1: Dystroglycan (D 62.5 2.5 5.4E-05 43.9 0.0 77 430-515 98-175 (290)
26 smart00179 EGF_CA Calcium-bind 61.4 6.3 0.00014 27.0 1.9 30 157-186 3-33 (39)
27 PF01683 EB: EB module; Inter 59.5 6.6 0.00014 29.7 1.9 34 153-189 16-49 (52)
28 PF13947 GUB_WAK_bind: Wall-as 58.1 31 0.00068 29.7 6.2 47 308-354 45-94 (106)
29 cd00054 EGF_CA Calcium-binding 55.9 9.1 0.0002 25.7 2.0 31 157-187 3-34 (38)
30 PF15102 TMEM154: TMEM154 prot 55.9 2.5 5.4E-05 39.5 -1.2 29 488-516 58-88 (146)
31 PF01826 TIL: Trypsin Inhibito 51.8 26 0.00057 26.6 4.1 21 407-428 33-53 (55)
32 PF09064 Tme5_EGF_like: Thromb 46.5 11 0.00024 26.7 1.1 18 170-187 11-28 (34)
33 PF07974 EGF_2: EGF-like domai 45.6 15 0.00033 25.5 1.7 23 163-186 6-28 (32)
34 PF12662 cEGF: Complement Clr- 40.6 16 0.00034 23.9 1.1 20 407-426 2-21 (24)
35 PF04478 Mid2: Mid2 like cell 39.9 12 0.00026 35.3 0.6 33 484-516 45-81 (154)
36 PF12661 hEGF: Human growth fa 38.6 6.9 0.00015 21.9 -0.7 9 178-186 1-9 (13)
37 PF12946 EGF_MSP1_1: MSP1 EGF 33.9 33 0.00072 24.9 2.0 33 385-420 2-34 (37)
38 smart00181 EGF Epidermal growt 33.9 29 0.00063 23.3 1.7 24 163-187 6-30 (35)
39 PF01034 Syndecan: Syndecan do 31.8 16 0.00035 29.6 0.1 27 489-515 14-40 (64)
40 PTZ00382 Variant-specific surf 30.3 18 0.00038 31.5 0.1 12 489-500 67-78 (96)
41 PF01299 Lamp: Lysosome-associ 29.8 4.3 9.3E-05 42.2 -4.5 29 485-514 271-299 (306)
42 PF08693 SKG6: Transmembrane a 29.3 12 0.00026 27.6 -1.0 30 484-513 8-39 (40)
43 PF00008 EGF: EGF-like domain 28.1 43 0.00092 22.9 1.7 25 390-416 5-29 (32)
44 PF05808 Podoplanin: Podoplani 26.9 21 0.00046 34.0 0.0 30 488-517 133-162 (162)
45 PHA03099 epidermal growth fact 24.9 9.7 0.00021 35.0 -2.5 29 396-428 55-84 (139)
No 1
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.88 E-value=1.2e-22 Score=178.85 Aligned_cols=105 Identities=31% Similarity=0.600 Sum_probs=84.8
Q ss_pred eecCCCCCCCCCCcccccceeee----eeeeEEecCCCCceeEEEEEEEcCCCceEEEEEEccCCcEEEEEeecCCC-eE
Q 009861 75 WRSAELQDVFSPDEIIPYQILYL----LSNFSQSVNPAGKKSVHNNLTVTPMDYSRMRLIMNCTGEIQCWIEDKVKG-WS 149 (523)
Q Consensus 75 W~sG~w~g~~~~~~~i~~~~~~~----l~n~s~~~~~~~~~~v~~~~s~~~~~~~~~Rl~Ld~dG~Lr~y~w~~~s~-W~ 149 (523)
||+|+|+|. .+.+++.+ ++++.++.+ ..++++++.+...+ .++|++||++|+||+|.|.+..+ |.
T Consensus 1 wrsG~WnG~------~f~g~p~~~~~~~~~~~fv~~---~~e~~~t~~~~~~s-~~~r~~ld~~G~l~~~~w~~~~~~W~ 70 (110)
T PF00954_consen 1 WRSGPWNGQ------RFSGIPEMSSNSLYNYSFVSN---NEEVYYTYSLSNSS-VLSRLVLDSDGQLQRYIWNESTQSWS 70 (110)
T ss_pred CCccccCCe------EECCcccccccceeEEEEEEC---CCeEEEEEecCCCc-eEEEEEEeeeeEEEEEEEecCCCcEE
Confidence 899999997 33333322 344444433 35668888755444 58999999999999999998887 99
Q ss_pred EEEeecCCCCCCCcCCCCCcccCCCCCCcccccCCCCCCC
Q 009861 150 LIWWEPRDPCSVIHSCGTFGSCNSNYERECQFLRGFGPVS 189 (523)
Q Consensus 150 ~~w~ap~d~Cdv~g~CG~~GiC~~~~~~~CsC~pGF~p~s 189 (523)
+.|.+|.++||+|++||+||+|+.+..+.|+||+||+|++
T Consensus 71 ~~~~~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 71 VFWSAPKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred EEEEecccCCCCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 9999999999999999999999988888999999999974
No 2
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.49 E-value=2.9e-14 Score=114.81 Aligned_cols=64 Identities=41% Similarity=0.841 Sum_probs=52.4
Q ss_pred cCCCccEEEEEeeeecCCCCCC--CCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEEeccccccc
Q 009861 209 CGGKDMFLRLKMTKIWKTDSNL--PVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWIWTEELNDL 280 (523)
Q Consensus 209 C~~~d~F~~l~~vkl~~pd~~~--~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~~~L~~l 280 (523)
|+.+|+|+++++|++|..+..+ ..+++++|+++||+||||+||+|.+++ ++++|++|+++|+|+
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~--------~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLS--------GGGGCLLWYGDLVDL 66 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccC--------CCCEEEEEcCEeecC
Confidence 5456899999999996554333 568999999999999999999997431 367899999999885
No 3
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.39 E-value=7.8e-14 Score=124.01 Aligned_cols=49 Identities=49% Similarity=0.854 Sum_probs=37.9
Q ss_pred CCccCEEEEeCCCCceeeeeCCCCccccCCCccccC----c--ceEEeecCCCCCC
Q 009861 1 MDSGNFVLQDDQVGISLWESFKHPTDTFLAGMYMGE----N--LSSTSWAGQDDPK 50 (523)
Q Consensus 1 LDsGNLVL~d~~~~~vLWQSFDhPTDTLLPGqkL~~----~--~~LtSwkS~~DPS 50 (523)
+|+|||||++ ..+.+|||||||||||+||+|+|+. + ..|+||++.+|||
T Consensus 60 ~~~GNlvl~d-~~~~~lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 60 QDDGNLVLYD-SSGNVLWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp ETTSEEEEEE-TTSEEEEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred eCCCCEEEEe-ecceEEEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 4899999999 6889999999999999999999875 3 3599999999996
No 4
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.36 E-value=1.2e-12 Score=108.26 Aligned_cols=77 Identities=39% Similarity=0.824 Sum_probs=60.6
Q ss_pred cCCC---ccEEEEEeeeecCCCCCCCCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEEecccccccccccc
Q 009861 209 CGGK---DMFLRLKMTKIWKTDSNLPVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWIWTEELNDLQQGFS 285 (523)
Q Consensus 209 C~~~---d~F~~l~~vkl~~pd~~~~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~~~L~~l~~~~~ 285 (523)
|+.+ +.|+.+.+++++..+......++++|+++||+||+|+||+|.+ ++++|++|...+.+.+. ..
T Consensus 5 C~~~~~~~~f~~~~~~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~~~~----------~~~~C~~~~~~~~~~~~-~~ 73 (84)
T cd01098 5 CGGDGSTDGFLKLPDVKLPDNASAITAISLEECREACLSNCSCTAYAYNN----------GSGGCLLWNGLLNNLRS-LS 73 (84)
T ss_pred cCCCCCCCEEEEeCCeeCCCchhhhccCCHHHHHHHHhcCCCcceeeecC----------CCCeEEEEeceecceEe-ec
Confidence 6543 6899999999854433235679999999999999999999963 36789999999988773 33
Q ss_pred CCcceEEEEee
Q 009861 286 NGSRDLCVRVA 296 (523)
Q Consensus 286 ~~g~~lyIRV~ 296 (523)
..+.++||||+
T Consensus 74 ~~~~~~yiKv~ 84 (84)
T cd01098 74 SGGGTLYLRLA 84 (84)
T ss_pred CCCcEEEEEeC
Confidence 45689999985
No 5
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.32 E-value=2.3e-12 Score=107.84 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=58.8
Q ss_pred cCCCccEEEEEeeeecCCCCCCCCCChHHhHHHhcc---CCceEeeecccccCcCCCCCCCCCceEEecccc-ccccccc
Q 009861 209 CGGKDMFLRLKMTKIWKTDSNLPVNNETECLKECLS---SCRCQAYSYEESDNTRRDNPSDGGTCWIWTEEL-NDLQQGF 284 (523)
Q Consensus 209 C~~~d~F~~l~~vkl~~pd~~~~~~sleeC~~~CL~---NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~~~L-~~l~~~~ 284 (523)
|...+.|+++.+|++ |+.. ..++++|+++|++ ||||+||+|.+ .+.+|++|.++| ++++ .+
T Consensus 5 ~~~~g~fl~~~~~kl--pd~~--~~s~~eC~~~Cl~~~~nCsC~Aya~~~----------~~~gC~~W~~~l~~d~~-~~ 69 (80)
T cd00129 5 CKSAGTTLIKIALKI--KTTK--ANTADECANRCEKNGLPFSCKAFVFAK----------ARKQCLWFPFNSMSGVR-KE 69 (80)
T ss_pred eecCCeEEEeecccC--Cccc--ccCHHHHHHHHhcCCCCCCceeeeccC----------CCCCeEEecCcchhhHH-hc
Confidence 444468999999998 5543 2789999999999 99999999963 245899999999 9998 45
Q ss_pred cCCcceEEEEe
Q 009861 285 SNGSRDLCVRV 295 (523)
Q Consensus 285 ~~~g~~lyIRV 295 (523)
.+.+.+||||.
T Consensus 70 ~~~g~~Ly~r~ 80 (80)
T cd00129 70 FSHGFDLYENK 80 (80)
T ss_pred cCCCceeEeEC
Confidence 56789999984
No 6
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.21 E-value=3.4e-06 Score=67.95 Aligned_cols=71 Identities=31% Similarity=0.697 Sum_probs=52.9
Q ss_pred ccEEEEEeeeecCCCCC-CCCCChHHhHHHhcc-CCceEeeecccccCcCCCCCCCCCceEEec-cccccccccccCCcc
Q 009861 213 DMFLRLKMTKIWKTDSN-LPVNNETECLKECLS-SCRCQAYSYEESDNTRRDNPSDGGTCWIWT-EELNDLQQGFSNGSR 289 (523)
Q Consensus 213 d~F~~l~~vkl~~pd~~-~~~~sleeC~~~CL~-NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~-~~L~~l~~~~~~~g~ 289 (523)
..|..++++.++..... ....++++|++.|++ +|+|.||.|.. ++++|++|. +.+.+.. .....+.
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~----------~~~~C~l~~~~~~~~~~-~~~~~~~ 72 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNN----------GTKGCLLWSESSLGDAR-LFPSGGV 72 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcC----------CCCEEEEeeCCccccce-ecccCCc
Confidence 46888888888532221 346799999999999 99999999962 257899998 7777765 3345566
Q ss_pred eEEEE
Q 009861 290 DLCVR 294 (523)
Q Consensus 290 ~lyIR 294 (523)
++|.|
T Consensus 73 ~~y~~ 77 (78)
T smart00473 73 DLYEK 77 (78)
T ss_pred eeEEe
Confidence 77776
No 7
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=96.77 E-value=0.0013 Score=53.73 Aligned_cols=48 Identities=17% Similarity=0.452 Sum_probs=35.0
Q ss_pred EeeeecCCCCC-CCCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEEeccc
Q 009861 219 KMTKIWKTDSN-LPVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWIWTEE 276 (523)
Q Consensus 219 ~~vkl~~pd~~-~~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~~~ 276 (523)
+++.+...+.. ....+.++|++.|+.+++|.||.|.. ..+.|+++...
T Consensus 10 ~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~~----------~~~~C~lk~~~ 58 (73)
T cd01100 10 SNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYNT----------KSKKCFLKSSE 58 (73)
T ss_pred CCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEEC----------CCCeEEcccCC
Confidence 35555444432 23568999999999999999999962 35789997653
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=93.52 E-value=0.6 Score=41.05 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.9
Q ss_pred EEEEEEccCCcEEEEEe
Q 009861 126 RMRLIMNCTGEIQCWIE 142 (523)
Q Consensus 126 ~~Rl~Ld~dG~Lr~y~w 142 (523)
..+++|..||+|++|.-
T Consensus 87 ~~~~~L~ddGnlvl~~~ 103 (114)
T smart00108 87 NYVLVLLDDGNLVIYDS 103 (114)
T ss_pred ceEEEEeCCCCEEEECC
Confidence 57899999999999864
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=92.09 E-value=0.44 Score=42.07 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=14.7
Q ss_pred ccCEEEEeCCCCceeeeeCC
Q 009861 3 SGNFVLQDDQVGISLWESFK 22 (523)
Q Consensus 3 sGNLVL~d~~~~~vLWQSFD 22 (523)
.||||+.......++|.|=-
T Consensus 30 dgnlv~~~~~~~~~vW~snt 49 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANR 49 (116)
T ss_pred eEEEEEEeCCCCeEEEECCC
Confidence 68999997423478998854
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=91.92 E-value=1.2 Score=39.27 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=15.1
Q ss_pred EEEEEEccCCcEEEEEe
Q 009861 126 RMRLIMNCTGEIQCWIE 142 (523)
Q Consensus 126 ~~Rl~Ld~dG~Lr~y~w 142 (523)
..+++|..||+|++|.-
T Consensus 88 ~~~~~L~ddGnlvl~~~ 104 (116)
T cd00028 88 NYVLVLLDDGNLVLYDS 104 (116)
T ss_pred ceEEEEeCCCCEEEECC
Confidence 57899999999999874
No 11
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=90.98 E-value=0.65 Score=40.84 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=42.9
Q ss_pred CccCEEEEeCCCCceeeeeCCC-C-cc----ccCCCccccC--cceEEeecCCCCCCCceEEEEecCCCceeEEecC-CE
Q 009861 2 DSGNFVLQDDQVGISLWESFKH-P-TD----TFLAGMYMGE--NLSSTSWAGQDDPKPGNFTFKMDQGENQYQITKP-FI 72 (523)
Q Consensus 2 DsGNLVL~d~~~~~vLWQSFDh-P-TD----TLLPGqkL~~--~~~LtSwkS~~DPS~G~fsl~ld~g~~~l~l~~~-~~ 72 (523)
..||||+.......++|+|--+ | .+ +|-..-.|.. ...-+-|.+.+....|.|.+.|+++.+ ++|++. .+
T Consensus 28 ~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t~~~~~~~~~~L~ddGn-lvl~~~~~~ 106 (114)
T smart00108 28 NDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANGNYVLVLLDDGN-LVIYDSDGN 106 (114)
T ss_pred CCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEecccCCCCceEEEEeCCCC-EEEECCCCC
Confidence 4699999984224789999653 2 12 1111112210 111234777776667889999984333 455543 46
Q ss_pred EEeecC
Q 009861 73 WYWRSA 78 (523)
Q Consensus 73 ~YW~sG 78 (523)
+.|.|.
T Consensus 107 ~~W~Sf 112 (114)
T smart00108 107 FLWQSF 112 (114)
T ss_pred EEeCCC
Confidence 788764
No 12
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=89.51 E-value=1.2 Score=39.59 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=30.3
Q ss_pred CccCEEEEeCCCCceeeee-CCCCccccCCCccccCcceEEeecCCCCCCCceEEEEecCCCceeEEec-CCEEEeec
Q 009861 2 DSGNFVLQDDQVGISLWES-FKHPTDTFLAGMYMGENLSSTSWAGQDDPKPGNFTFKMDQGENQYQITK-PFIWYWRS 77 (523)
Q Consensus 2 DsGNLVL~d~~~~~vLWQS-FDhPTDTLLPGqkL~~~~~LtSwkS~~DPS~G~fsl~ld~g~~~l~l~~-~~~~YW~s 77 (523)
+.|||||.+ ..+.++|+| .. .......+.+.|++.+ .|+|++ ...+.|++
T Consensus 27 ~dGnLvl~~-~~~~~iWss~~t------------------------~~~~~~~~~~~L~~~G-Nlvl~d~~~~~lW~S 78 (114)
T PF01453_consen 27 SDGNLVLYD-SNGSVIWSSNNT------------------------SGRGNSGCYLVLQDDG-NLVLYDSSGNVLWQS 78 (114)
T ss_dssp TTSEEEEEE-TTTEEEEE--S-------------------------TTSS-SSEEEEEETTS-EEEEEETTSEEEEES
T ss_pred CCCeEEEEc-CCCCEEEEeccc------------------------CCccccCeEEEEeCCC-CEEEEeecceEEEee
Confidence 579999998 466779998 10 0111135677787332 355654 46788987
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=89.08 E-value=0.4 Score=38.35 Aligned_cols=54 Identities=22% Similarity=0.546 Sum_probs=40.1
Q ss_pred cEEEEEeeeecCCCC-CCCCCChHHhHHHhccCCc-eEeeecccccCcCCCCCCCCCceEEecccc
Q 009861 214 MFLRLKMTKIWKTDS-NLPVNNETECLKECLSSCR-CQAYSYEESDNTRRDNPSDGGTCWIWTEEL 277 (523)
Q Consensus 214 ~F~~l~~vkl~~pd~-~~~~~sleeC~~~CL~NCS-C~Ayay~~~~~~~~~~~~~~~~C~lW~~~L 277 (523)
.|.++++..+..... .+...++++|.+.|+.+=. |.+|.|.. ....|.|.....
T Consensus 3 ~f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~~C~s~~y~~----------~~~~C~L~~~~~ 58 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEINVPSLEECAQLCLNEPRRCKSFNYDP----------SSKTCYLSSSDR 58 (79)
T ss_dssp TEEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT-ESEEEEET----------TTTEEEEECSSS
T ss_pred CeEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcccCCeEEEEC----------CCCEEEEcCCCC
Confidence 477888887755332 2344599999999999999 99999973 357899875433
No 14
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=83.34 E-value=5.5 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.634 Sum_probs=29.7
Q ss_pred CCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEEec-ccccccc
Q 009861 231 PVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWIWT-EELNDLQ 281 (523)
Q Consensus 231 ~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~-~~L~~l~ 281 (523)
...+.++|-+.|..+=.|.++.+. ...|.++. +.+..++
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~------------~~~C~~y~~~~i~~v~ 57 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD------------SGKCYLYNYGSISTVQ 57 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC------------CCCEEEEEcCCEEEEE
Confidence 456889999999999999999874 45899874 3333444
No 15
>smart00605 CW CW domain.
Probab=82.46 E-value=3.7 Score=34.96 Aligned_cols=55 Identities=15% Similarity=0.407 Sum_probs=34.5
Q ss_pred CCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEEec-cccccccccccCCcceEEEEee
Q 009861 231 PVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWIWT-EELNDLQQGFSNGSRDLCVRVA 296 (523)
Q Consensus 231 ~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~-~~L~~l~~~~~~~g~~lyIRV~ 296 (523)
...+.++|...|..+..|+.+... ....|.+.. +.+..+++.....+..+=+|+.
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~-----------~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~ 75 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGN-----------SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVS 75 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecC-----------CCCceEEEEcCCeEEEEEccCCCCcEEEEEEe
Confidence 356889999999999999987653 246898764 2344444222223344444443
No 16
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=81.00 E-value=1.7 Score=31.66 Aligned_cols=28 Identities=25% Similarity=0.685 Sum_probs=22.2
Q ss_pred CCccccCCCCceeeeecCCCeeeCCccce
Q 009861 396 HSTCKLTDNGETRCLCNETFRWDGNALKC 424 (523)
Q Consensus 396 ~s~c~~~~~g~~rc~c~~~~~w~~~~~~c 424 (523)
+.+|... .|..+|.|.+||+.+.....|
T Consensus 15 ~~~C~N~-~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 15 NGTCVNT-EGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp TSEEEEE-TTEEEEEESTTEEECTTSSEE
T ss_pred CCEEEcC-CCCEEeeCCCCcEECCCCCcC
Confidence 6666644 699999999999987766655
No 17
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=80.21 E-value=1.8 Score=36.21 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=28.7
Q ss_pred CCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEEecc
Q 009861 231 PVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWIWTE 275 (523)
Q Consensus 231 ~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~~ 275 (523)
...+.++|++.|..+=.|.||.|..... ....|+++..
T Consensus 20 ~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~-------~~~~C~LK~s 57 (79)
T smart00223 20 YVPSAQVCQKRCTSHPRCLFFTFSTNEP-------PEEKCLLKDS 57 (79)
T ss_pred ecCCHHHHHHhhcCCCCccEEEeeCCCC-------CCCEeEeCcC
Confidence 4578999999999999999999963210 1128999754
No 18
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=76.64 E-value=1.9 Score=31.70 Aligned_cols=37 Identities=27% Similarity=0.767 Sum_probs=18.0
Q ss_pred CCCChHHhHHHhccCCceEeeecccccCcCCCCCCCCCceEE
Q 009861 231 PVNNETECLKECLSSCRCQAYSYEESDNTRRDNPSDGGTCWI 272 (523)
Q Consensus 231 ~~~sleeC~~~CL~NCSC~Ayay~~~~~~~~~~~~~~~~C~l 272 (523)
...+.++|.++|..+=.|.++.|..... ....+.|+|
T Consensus 14 ~~~s~~~C~~~C~~~~~C~~~~~~~~~~-----~~~~~~C~L 50 (51)
T PF14295_consen 14 TASSPEECQAACAADPGCQAFTFNPPGC-----PSSSGRCYL 50 (51)
T ss_dssp ----HHHHHHHHHTSTT--EEEEETTEE--------------
T ss_pred cCCCHHHHHHHccCCCCCCEEEEECCCc-----ccccccccC
Confidence 4568999999999999999999963100 013567876
No 19
>PHA03264 envelope glycoprotein D; Provisional
Probab=69.58 E-value=4.8 Score=42.96 Aligned_cols=55 Identities=29% Similarity=0.530 Sum_probs=34.6
Q ss_pred CCCCC-ccCCCCCCCCcceeeccCCcccceeEEEEEEeeehhheee-----eeEEEEEecccccccc
Q 009861 458 NGWPD-RAENKPGGDSTQQVDAFNGRKKQQWTLIFGVTIASGIILS-----CIIIYFYTRRKRIHPL 518 (523)
Q Consensus 458 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 518 (523)
.|||. .|+..|-..-.. -.-....+++|||.||.+.|+- ....|+|+||++-.|+
T Consensus 336 ~gwp~l~a~~~~p~~p~~------p~~~~~~~~~vg~~~a~~~i~~~aa~~~~~~~~~~r~rg~g~~ 396 (416)
T PHA03264 336 EGWPSLEAITFPPPTPAT------PAVPRARPVIVGTGIAAAAIACVAAAGAVAYFVYTRRRGAGPL 396 (416)
T ss_pred CCCCCcccccCCCCCCCC------CCCCccceeeeehhhhHHHHHHHhhhcceeEEEEEeeccCCCC
Confidence 58887 444433322211 1123467999999999987765 4556668888776665
No 20
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=69.12 E-value=3.6 Score=27.28 Aligned_cols=29 Identities=21% Similarity=0.556 Sum_probs=21.6
Q ss_pred CCCCcCCCCCcccCCC-CCCcccccCCCCC
Q 009861 159 CSVIHSCGTFGSCNSN-YERECQFLRGFGP 187 (523)
Q Consensus 159 Cdv~g~CG~~GiC~~~-~~~~CsC~pGF~p 187 (523)
|.....|...+.|... ....|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4435678888999754 4578999999964
No 21
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=68.91 E-value=1.5 Score=31.87 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=24.6
Q ss_pred CCCCCC-cCCCCCcccCC-CCCCcccccCCCCC
Q 009861 157 DPCSVI-HSCGTFGSCNS-NYERECQFLRGFGP 187 (523)
Q Consensus 157 d~Cdv~-g~CG~~GiC~~-~~~~~CsC~pGF~p 187 (523)
|.|... ..|..++.|.. ..+..|.|++||+.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 677774 47999999975 35678999999984
No 22
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=68.10 E-value=6.7 Score=29.64 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=28.8
Q ss_pred cCCCCCCCCCCcCCCCCCCCccccCCCCceeeeecCCCeeeC
Q 009861 378 NPPPEPTRTSPRDCEDWPHSTCKLTDNGETRCLCNETFRWDG 419 (523)
Q Consensus 378 ~~p~ep~c~~~~dc~~~~~s~c~~~~~g~~rc~c~~~~~w~~ 419 (523)
+.|-|+ |...++|. ++|.|.. .+|.|..||....
T Consensus 16 ~~~g~~-C~~~~qC~--~~s~C~~-----g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 16 VQPGES-CESDEQCI--GGSVCVN-----GRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCC-CCCcCCCC--CcCEEcC-----CEeECCCCCEecC
Confidence 777788 99999999 5999965 3999999998754
No 23
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=67.88 E-value=2.8 Score=29.88 Aligned_cols=29 Identities=31% Similarity=0.712 Sum_probs=20.1
Q ss_pred cCCCCCCCCccccCCCCceeeeecCCCeeeCC
Q 009861 389 RDCEDWPHSTCKLTDNGETRCLCNETFRWDGN 420 (523)
Q Consensus 389 ~dc~~~~~s~c~~~~~g~~rc~c~~~~~w~~~ 420 (523)
..|.. |.+|... .+...|.|++||..|+.
T Consensus 6 ~~C~~--nA~C~~~-~~~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 6 GGCHP--NATCTNT-GGSYTCTCKPGYEGDGF 34 (36)
T ss_dssp GGS-T--TCEEEE--TTSEEEEE-CEEECCST
T ss_pred CCCCC--CcEeecC-CCCEEeECCCCCccCCc
Confidence 35555 7788734 34899999999999975
No 24
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=64.71 E-value=14 Score=30.52 Aligned_cols=37 Identities=27% Similarity=0.705 Sum_probs=29.4
Q ss_pred CCCChHHhHHHhcc--CCceEeeecccccCcCCCCCCCCCceEEecccc
Q 009861 231 PVNNETECLKECLS--SCRCQAYSYEESDNTRRDNPSDGGTCWIWTEEL 277 (523)
Q Consensus 231 ~~~sleeC~~~CL~--NCSC~Ayay~~~~~~~~~~~~~~~~C~lW~~~L 277 (523)
...++++|.+.|+. +=.|.++.|.. ....|.|-..+.
T Consensus 23 ~~~s~~~C~~~C~~~~~f~CrSf~y~~----------~~~~C~L~~~~~ 61 (80)
T cd01099 23 TVASLEECLRKCLEETEFTCRSFNYNY----------KSKECILSDEDR 61 (80)
T ss_pred ecCCHHHHHHHhCCCCCceEeEEEEEc----------CCCEEEEeCCCc
Confidence 35799999999999 88999999963 357899865443
No 25
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=62.53 E-value=2.5 Score=43.90 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=0.0
Q ss_pred CcccccCcceecCCCcccc-cccccCCCCCCCCCccCCCCCCCCcceeeccCCcccceeEEEEEEeeehhheeeeeEEEE
Q 009861 430 GNYSLKGHDICATGKNVPV-EKGRIGFPSNGWPDRAENKPGGDSTQQVDAFNGRKKQQWTLIFGVTIASGIILSCIIIYF 508 (523)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (523)
.+.++.++-.|..-..+|+ ..++| |+.-=+ -+.|..++..+. ....--.|+|..|.||..+++..||+.+
T Consensus 98 ~svsv~~~G~C~~~~~ip~~~~~~i--P~~~~~---t~~p~~~~~~~s----~~d~yL~T~IpaVVI~~iLLIA~iIa~i 168 (290)
T PF05454_consen 98 KSVSVIPIGSCQDTSFIPTPPDSEI--PTPAPP---TNTPDEPSPKSS----FSDDYLHTFIPAVVIAAILLIAGIIACI 168 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEeeccCCCccCCCCCcCcC--CCCCCC---CCCCCCCCCCcc----cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888887777776 34454 221101 111111111000 0001224677888888888888888888
Q ss_pred Eeccccc
Q 009861 509 YTRRKRI 515 (523)
Q Consensus 509 ~~~~~~~ 515 (523)
+.||||-
T Consensus 169 cyrrkR~ 175 (290)
T PF05454_consen 169 CYRRKRK 175 (290)
T ss_dssp -------
T ss_pred hhhhhhc
Confidence 7777774
No 26
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=61.36 E-value=6.3 Score=27.05 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=22.4
Q ss_pred CCCCCCcCCCCCcccCCC-CCCcccccCCCC
Q 009861 157 DPCSVIHSCGTFGSCNSN-YERECQFLRGFG 186 (523)
Q Consensus 157 d~Cdv~g~CG~~GiC~~~-~~~~CsC~pGF~ 186 (523)
+.|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567655678888899753 456799999996
No 27
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=59.47 E-value=6.6 Score=29.67 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=27.9
Q ss_pred eecCCCCCCCcCCCCCcccCCCCCCcccccCCCCCCC
Q 009861 153 WEPRDPCSVIHSCGTFGSCNSNYERECQFLRGFGPVS 189 (523)
Q Consensus 153 ~ap~d~Cdv~g~CG~~GiC~~~~~~~CsC~pGF~p~s 189 (523)
..|-+.|....-|-.+++|.. ..|.|++||.+..
T Consensus 16 ~~~g~~C~~~~qC~~~s~C~~---g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 16 VQPGESCESDEQCIGGSVCVN---GRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCCcCCCCCcCEEcC---CEeECCCCCEecC
Confidence 346678999999999999954 6899999997653
No 28
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=58.08 E-value=31 Score=29.66 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=32.7
Q ss_pred ecceeeEEeecCCCCeEEEEecCC-CcccCC--CCCccccCCCCCeeEEe
Q 009861 308 PIGTYSVTGIYPDSRNFSIQLKGA-DNYRRN--PNGTFHLNQSLPFYFIA 354 (523)
Q Consensus 308 ~~gsy~it~I~~~~~~fvi~~~~~-~C~~~~--~~~~~~l~~~~pF~i~~ 354 (523)
.++.|.|+.|+.+.+.+.|+.... +|.... ......++..+||.+.+
T Consensus 45 ~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 94 (106)
T PF13947_consen 45 SSGNYEVLSISYENGTIRVSDPISSNCYSSSSSNSSNSNLSLNGPFFFSS 94 (106)
T ss_pred cCCcEEEEEEecCCCEEEEEeccccceecCCCCcccccEEeecCCceEcc
Confidence 567799999999999999888764 465533 22234455555887755
No 29
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=55.93 E-value=9.1 Score=25.72 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=22.1
Q ss_pred CCCCCCcCCCCCcccCCC-CCCcccccCCCCC
Q 009861 157 DPCSVIHSCGTFGSCNSN-YERECQFLRGFGP 187 (523)
Q Consensus 157 d~Cdv~g~CG~~GiC~~~-~~~~CsC~pGF~p 187 (523)
+.|.....|...+.|... ....|.|++||.-
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 567654568878889753 4467999999853
No 30
>PF15102 TMEM154: TMEM154 protein family
Probab=55.87 E-value=2.5 Score=39.53 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEEe-eeh-hheeeeeEEEEEecccccc
Q 009861 488 TLIFGVT-IAS-GIILSCIIIYFYTRRKRIH 516 (523)
Q Consensus 488 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 516 (523)
.|+++|- |+. .++|+.|++++|.||||..
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 4555544 333 3466778888899999874
No 31
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=51.76 E-value=26 Score=26.61 Aligned_cols=21 Identities=19% Similarity=0.650 Sum_probs=17.4
Q ss_pred eeeeecCCCeeeCCccceeecc
Q 009861 407 TRCLCNETFRWDGNALKCIQRK 428 (523)
Q Consensus 407 ~rc~c~~~~~w~~~~~~c~~~~ 428 (523)
..|+|+.||+++.. +.|+...
T Consensus 33 ~gC~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 33 EGCFCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp SEEEETTTEEEETT-SEEEEGG
T ss_pred ccCCCCCCeeEcCC-CCEEcHH
Confidence 34999999999996 8998754
No 32
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=46.52 E-value=11 Score=26.75 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.6
Q ss_pred ccCCCCCCcccccCCCCC
Q 009861 170 SCNSNYERECQFLRGFGP 187 (523)
Q Consensus 170 iC~~~~~~~CsC~pGF~p 187 (523)
.|+.+....|.||.||..
T Consensus 11 ~CDpn~~~~C~CPeGyIl 28 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYIL 28 (34)
T ss_pred ccCCCCCCceeCCCceEe
Confidence 577666779999999975
No 33
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=45.62 E-value=15 Score=25.50 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=18.7
Q ss_pred cCCCCCcccCCCCCCcccccCCCC
Q 009861 163 HSCGTFGSCNSNYERECQFLRGFG 186 (523)
Q Consensus 163 g~CG~~GiC~~~~~~~CsC~pGF~ 186 (523)
..|...|+|... ...|.|.+||.
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCc
Confidence 479999999853 46899999985
No 34
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=40.58 E-value=16 Score=23.95 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=16.7
Q ss_pred eeeeecCCCeeeCCccceee
Q 009861 407 TRCLCNETFRWDGNALKCIQ 426 (523)
Q Consensus 407 ~rc~c~~~~~w~~~~~~c~~ 426 (523)
.+|.|++||+=++..-.|+.
T Consensus 2 y~C~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 2 YTCSCPPGYQLSPDGRSCED 21 (24)
T ss_pred EEeeCCCCCcCCCCCCcccc
Confidence 58999999998887777764
No 35
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.86 E-value=12 Score=35.34 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=17.0
Q ss_pred cceeEEEEEEeee----hhheeeeeEEEEEecccccc
Q 009861 484 KQQWTLIFGVTIA----SGIILSCIIIYFYTRRKRIH 516 (523)
Q Consensus 484 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 516 (523)
++.--+|+||.+. ..|++..++.||..||||-+
T Consensus 45 ~knknIVIGvVVGVGg~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 45 SKNKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred cCCccEEEEEEecccHHHHHHHHHhheeEEEecccCc
Confidence 3333455555544 33444455555666666643
No 36
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=38.62 E-value=6.9 Score=21.89 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=6.5
Q ss_pred cccccCCCC
Q 009861 178 ECQFLRGFG 186 (523)
Q Consensus 178 ~CsC~pGF~ 186 (523)
.|.|++||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 489999985
No 37
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=33.95 E-value=33 Score=24.88 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCCCcCCCCCCCCccccCCCCceeeeecCCCeeeCC
Q 009861 385 RTSPRDCEDWPHSTCKLTDNGETRCLCNETFRWDGN 420 (523)
Q Consensus 385 c~~~~dc~~~~~s~c~~~~~g~~rc~c~~~~~w~~~ 420 (523)
|.. ..|-+ ||.|--..+|...|.|+.||+=+..
T Consensus 2 C~~-~~cP~--NA~C~~~~dG~eecrCllgyk~~~~ 34 (37)
T PF12946_consen 2 CID-TKCPA--NAGCFRYDDGSEECRCLLGYKKVGG 34 (37)
T ss_dssp -SS-S---T--TEEEEEETTSEEEEEE-TTEEEETT
T ss_pred ccC-ccCCC--CcccEEcCCCCEEEEeeCCccccCC
Confidence 444 55655 9999866689999999999997653
No 38
>smart00181 EGF Epidermal growth factor-like domain.
Probab=33.89 E-value=29 Score=23.32 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=17.6
Q ss_pred cCCCCCcccCCC-CCCcccccCCCCC
Q 009861 163 HSCGTFGSCNSN-YERECQFLRGFGP 187 (523)
Q Consensus 163 g~CG~~GiC~~~-~~~~CsC~pGF~p 187 (523)
..|... .|... ....|.|++||.-
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 456666 78653 5678999999964
No 39
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=31.76 E-value=16 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=0.7
Q ss_pred EEEEEeeehhheeeeeEEEEEeccccc
Q 009861 489 LIFGVTIASGIILSCIIIYFYTRRKRI 515 (523)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (523)
+|.|+.++....+..|++.+|..|||-
T Consensus 14 vIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp -----------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555444444445555666656653
No 40
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=30.31 E-value=18 Score=31.49 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=7.5
Q ss_pred EEEEEeeehhhe
Q 009861 489 LIFGVTIASGII 500 (523)
Q Consensus 489 ~~~~~~~~~~~~ 500 (523)
.|.|++|+.+++
T Consensus 67 aiagi~vg~~~~ 78 (96)
T PTZ00382 67 AIAGISVAVVAV 78 (96)
T ss_pred cEEEEEeehhhH
Confidence 477777765543
No 41
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=29.82 E-value=4.3 Score=42.16 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=20.0
Q ss_pred ceeEEEEEEeeehhheeeeeEEEEEecccc
Q 009861 485 QQWTLIFGVTIASGIILSCIIIYFYTRRKR 514 (523)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (523)
.-.|+|||+++|..||+. +|.|++.|||+
T Consensus 271 ~~vPIaVG~~La~lvliv-LiaYli~Rrr~ 299 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIV-LIAYLIGRRRS 299 (306)
T ss_pred chHHHHHHHHHHHHHHHH-HHhheeEeccc
Confidence 346888999887666654 55677766654
No 42
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.31 E-value=12 Score=27.62 Aligned_cols=30 Identities=27% Similarity=0.607 Sum_probs=14.8
Q ss_pred cceeEEEEEEeeehhhe--eeeeEEEEEeccc
Q 009861 484 KQQWTLIFGVTIASGII--LSCIIIYFYTRRK 513 (523)
Q Consensus 484 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 513 (523)
+.--+.-+||+|--+.| +..+|+|+..||+
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 33455666666654433 3334455444544
No 43
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=28.08 E-value=43 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=18.7
Q ss_pred CCCCCCCCccccCCCCceeeeecCCCe
Q 009861 390 DCEDWPHSTCKLTDNGETRCLCNETFR 416 (523)
Q Consensus 390 dc~~~~~s~c~~~~~g~~rc~c~~~~~ 416 (523)
-|.. +.+|.+...+..+|.|.+||.
T Consensus 5 ~C~n--~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQN--GGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTT--TEEEEEESTSEEEEEEBTTEE
T ss_pred cCCC--CeEEEeCCCCCEEeECCCCCc
Confidence 4555 678874437999999999963
No 44
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=26.93 E-value=21 Score=34.01 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=0.0
Q ss_pred EEEEEEeeehhheeeeeEEEEEeccccccc
Q 009861 488 TLIFGVTIASGIILSCIIIYFYTRRKRIHP 517 (523)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (523)
-+|+||.+|.|+|-..||+....-+-|..|
T Consensus 133 GIIVGVLlaIG~igGIIivvvRKmSGRysp 162 (162)
T PF05808_consen 133 GIIVGVLLAIGFIGGIIIVVVRKMSGRYSP 162 (162)
T ss_dssp ------------------------------
T ss_pred eehhhHHHHHHHHhheeeEEeehhccccCC
Confidence 468999999988766555444333456544
No 45
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=24.93 E-value=9.7 Score=34.95 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=19.7
Q ss_pred CCccc-cCCCCceeeeecCCCeeeCCccceeecc
Q 009861 396 HSTCK-LTDNGETRCLCNETFRWDGNALKCIQRK 428 (523)
Q Consensus 396 ~s~c~-~~~~g~~rc~c~~~~~w~~~~~~c~~~~ 428 (523)
|-+|. -++-.+..|-|..||.=. -|++..
T Consensus 55 HG~C~yI~dl~~~~CrC~~GYtGe----RCEh~d 84 (139)
T PHA03099 55 HGDCIHARDIDGMYCRCSHGYTGI----RCQHVV 84 (139)
T ss_pred CCEEEeeccCCCceeECCCCcccc----ccccee
Confidence 44676 565588889999998633 366554
Done!