Query 009862
Match_columns 523
No_of_seqs 517 out of 2908
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 9.8E-23 3.3E-27 216.7 16.1 207 300-521 275-487 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.6 5.4E-14 1.8E-18 147.0 16.8 165 317-502 43-212 (451)
3 1pw4_A Glycerol-3-phosphate tr 99.5 1E-13 3.6E-18 144.8 13.6 177 302-496 253-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 99.5 6.1E-13 2.1E-17 141.1 16.9 181 301-496 13-196 (491)
5 3o7q_A L-fucose-proton symport 99.5 7E-13 2.4E-17 138.1 16.9 181 301-502 26-236 (438)
6 2gfp_A EMRD, multidrug resista 99.4 1.9E-13 6.6E-18 139.8 10.8 167 317-503 15-181 (375)
7 2cfq_A Lactose permease; trans 99.4 1.1E-12 3.7E-17 137.1 14.6 144 350-503 262-406 (417)
8 3o7q_A L-fucose-proton symport 99.4 1E-11 3.4E-16 129.3 20.3 154 317-492 273-428 (438)
9 2xut_A Proton/peptide symporte 99.4 2.6E-12 9E-17 137.5 15.5 163 317-498 27-200 (524)
10 4gc0_A D-xylose-proton symport 99.2 1.1E-10 3.9E-15 123.4 15.9 152 348-500 56-223 (491)
11 4aps_A DI-OR tripeptide H+ sym 99.1 2.2E-10 7.4E-15 121.3 11.0 175 318-503 299-478 (491)
12 2cfq_A Lactose permease; trans 98.8 8.6E-10 2.9E-14 114.9 0.9 165 317-500 22-191 (417)
13 2gfp_A EMRD, multidrug resista 98.7 2.6E-09 9E-14 108.8 3.3 146 317-481 214-361 (375)
14 2xut_A Proton/peptide symporte 98.3 1.8E-07 6.2E-12 99.7 2.5 88 419-506 414-512 (524)
15 4aw6_A CAAX prenyl protease 1 26.1 4.4E+02 0.015 27.1 11.4 41 358-398 176-216 (482)
16 2g9p_A Antimicrobial peptide l 26.0 41 0.0014 19.1 1.9 14 366-379 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.89 E-value=9.8e-23 Score=216.74 Aligned_cols=207 Identities=26% Similarity=0.487 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
++++++.+...+++++.+++.+.+|.|.+.+..+. ........+.+..+..+++.+++++++||+|||+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~ 344 (491)
T 4gc0_A 275 VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA----------STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL 344 (491)
T ss_dssp CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC----------CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 35677777888888888999999999999888654 22455566677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
++.+..+++++++.+....... ...+..++.++++..++..+++++.+++.+|+||++.|++++|++++++++++
T Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 345 QIIGALGMAIGMFSLGTAFYTQ-----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLAN 419 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 9998888888777665443322 11233445555666677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH------hhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHHhcccccccc
Q 009862 460 IIVTYTLPVMLS------SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATK 521 (523)
Q Consensus 460 iig~~l~~~l~~------~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~~~~~~~~~~~ 521 (523)
++++.++|.+.+ ..++...|+++++++++..+++++++||||++++||++++|+++.++.++
T Consensus 420 ~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~ 487 (491)
T 4gc0_A 420 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQ 487 (491)
T ss_dssp HHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccccc
Confidence 999999988754 34566788899999999999999999999999999999999887665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=5.4e-14 Score=146.99 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=131.4
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
..+.+..++|.+.++ + ++. ....++.++..++.+++.+++|+++||+|||++++++.++.+++.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~---------~-~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 43 VRKNFALAMPYLVEQ---------G-FSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp HHTSHHHHHHHTTSS---------T-TCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------h-ccH-hHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 455566667777665 3 344 56667777889999999999999999999999999999998888887776
Q ss_pred ----HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 397 ----SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 397 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
..++. .+++..++.++......+...++++|++|.+.|++++++.+....+|.++++.+.+.+.+.
T Consensus 112 ~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 112 VPWATSSIA----------VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp CHHHHSSSS----------HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred hhhccccHH----------HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3444444555555555666668889999999999999999999999999999999999999
Q ss_pred hC-chhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 473 IG-LAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 473 ~G-~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.| |++.|++.++++++..++.++++||++.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 98 9999999998888877777777777543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=1e-13 Score=144.77 Aligned_cols=177 Identities=13% Similarity=0.174 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA--GRRKL 379 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~--GRR~l 379 (523)
.++..++..++. ..+.+.+..|.|.++++ .+|++. ....+...+..++.+++.++.++++||+ |||++
T Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 253 LLWYIAIANVFV-YLLRYGILDWSPTYLKE--------VKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHBTT--------BSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 333333333333 33467788899999876 245545 4566677788899999999999999999 99998
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH-
Q 009862 380 LLTTIPVLI-VSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI- 457 (523)
Q Consensus 380 ll~~~~l~~-i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l- 457 (523)
++++.++.. ++++++.+. .....+...+.. ++.+++.....+..+.++.|.+|++.|++++|+.+.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMN-------PAGNPTVDMICM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 394 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSC-------CTTCHHHHHHHH-HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------cccCHHHHHHHH-HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Confidence 887766655 433332211 111112222222 2233333334445557789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 458 CDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 458 G~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
|.++++.+.+.+.+..|+...|++.++++++..++.++.
T Consensus 395 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 395 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888777766665543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=6.1e-13 Score=141.07 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCChHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRRKL 379 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR~l 379 (523)
+.++..++..++..+ +++.+..+++.++.+. ...+++|++. ....++.++..++.+++.+++|+++|| +|||++
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERF-SYYGMRAILLYYMWFL---ISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp THHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc---cchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 344444444444444 4667777888887661 0111256655 566677788999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch--hhHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV--RGICIAICAMAYWI 457 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~--Rg~a~gi~~~~~~l 457 (523)
++++.++.+++.+++.+..+.. .+++..++.++......+...++++|++|++. |+.++++.+....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 157 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGAS----------ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH
Confidence 9999988888877765433332 33334444444444555666678899999988 78888889999999
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 458 CDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 458 G~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
|.+++|.+.+.+.+..||++.|++.+++++++.++.++.
T Consensus 158 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 158 GAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988777666665554443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=7e-13 Score=138.07 Aligned_cols=181 Identities=9% Similarity=0.037 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.+++.++..++..+ ..+.+..+.|.+.+++| ++. ....++.++..++.+++.+++|+++||+|||+++
T Consensus 26 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g---------~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 94 (438)
T 3o7q_A 26 IPFALLCSLFFLWAV-ANNLNDILLPQFQQAFT---------LTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSC---------CCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHcC---------CCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence 344444444333333 34566777888777654 444 5677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILV---ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 381 l~~~~l~~i~~l~l~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
+++.++.+++.+++. ...++. .+++..++.++......+....+++|++|++.|+.++++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 95 ITGLFLYALGAALFWPAAEIMNYT----------LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccHH----------HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 999998888877763 222222 3344444444545555556667889999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhhC-------------------------chhHHHHHHHHHHHHHHHhh-eeccCCCC
Q 009862 458 CDIIVTYTLPVML-SSIG-------------------------LAGAFGVYAVVCFISWVFVF-LRVPETKG 502 (523)
Q Consensus 458 G~iig~~l~~~l~-~~~G-------------------------~~~~f~i~~i~~~i~~v~~~-~~lpEtk~ 502 (523)
|.++++.+.+.+. ...+ |++.|++.++++++..++.+ ...||++.
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999999988 4444 78888777766665554443 34566543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.45 E-value=1.9e-13 Score=139.75 Aligned_cols=167 Identities=10% Similarity=0.076 Sum_probs=131.9
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+...+....|.+.+++ |.+. ....+...+..++..++.++.|+++||+|||++++++.++.+++.+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~---------g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 15 AQTIYIPAIADMARDL---------NVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHTTS---------SSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHc---------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 3455566677776654 4444 56667778889999999999999999999999999999888888877766
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+.. .+++..++.++......+....++.|.+|++.|++++++.+....+|.++++.+.+.+.+..+|+
T Consensus 85 ~~~~~----------~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 85 TSSLT----------VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred hccHH----------HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 54433 34444444455555556666678899999999999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
..+++.+++.++..++..+++||++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999988888888777677778887543
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.42 E-value=1.1e-12 Score=137.06 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccc
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGP 429 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 429 (523)
.+...+..++.+++.++.++++||+|||++++.+.++.+++.+++.+.. + .+..++...+...+ .....+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~l~~~~-~~~~~~ 331 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT------S---ALEVVILKTLHMFE-VPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC------S---HHHHHHHTTHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc------c---HHHHHHHHHHHHHH-HHHHHH
Confidence 4455566677888999999999999999998877766666544332111 0 11112221112222 122223
Q ss_pred ccceeeecccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 430 IPNILCAEIFPTKVRGICIAIC-AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 430 i~~~~~aElfP~~~Rg~a~gi~-~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
..+.+++|.+|++.|+++.++. +...++|++++|.+.|.+.+..|+...|.+.++++++..++.+++.||++..
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 3356789999999999999995 8888999999999999999988887788888888887777777777876653
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=1e-11 Score=129.27 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=110.1
Q ss_pred hhhhhhhchHHH-HHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQI-LEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~i-l~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~ 395 (523)
..+.+..|.|.+ +++. +|++. ....+...+..++.+++.++.++++||+|||++++++.++.+++++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~--------~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEI--------PGMTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHHHHHHS--------TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcc--------CCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 355677888998 7763 35555 5566667778899999999999999999999999888877777666554
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG- 474 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G- 474 (523)
+..... .++.+.+. +++.....+..+.++.|.+|++ |+++.++.. ...+|.+++|.+.+.+.+..|
T Consensus 344 ~~~~~~----------~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~ 410 (438)
T 3o7q_A 344 FAGGHV----------GLIALTLC-SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGN 410 (438)
T ss_dssp HCCHHH----------HHHHHHHH-HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTS
T ss_pred HcCCcH----------HHHHHHHH-HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 322111 22222222 3333444566667778999977 888888877 677999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHH
Q 009862 475 LAGAFGVYAVVCFISWVF 492 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~ 492 (523)
+...|.+.+++.++..++
T Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 411 IPTAELIPALCFAVIFIF 428 (438)
T ss_dssp SGGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888887665554444333
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.39 E-value=2.6e-12 Score=137.47 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=121.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccC------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-CChHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLG------ISSESASFLISAFTTFLMLPCIGVAMKLMDVA-GRRKLLLTTIPVLIV 389 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lg------ls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-GRR~lll~~~~l~~i 389 (523)
+++++..++|.++.+ ++| ++. ....++..+..++.+++.+++|+++||+ |||++++++.++.++
T Consensus 27 ~~~~~~~~l~~~l~~--------~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 27 SFYGMRNILTPFLMT--------ALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHH--------SCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 356777788887765 344 555 4566677788899999999999999999 999999998888887
Q ss_pred HHHHHHHHH-hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHH---HHHHHHHHHHHHHHH
Q 009862 390 SLIILVISE-TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAI---CAMAYWICDIIVTYT 465 (523)
Q Consensus 390 ~~l~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi---~~~~~~lG~iig~~l 465 (523)
+.+++.+.. +.. .+++..++.++......+...++++|.+|++.|+++.++ .+....+|.++++.+
T Consensus 98 ~~~~~~~~~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 98 GHAFLAIFEHSVQ----------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHTSSCHH----------HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHH----------HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665443 222 233334444444455556666788999999999776666 888999999999999
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 466 LPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 466 ~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
.+.+.+..+|++.|++.+++.++..++.++..|
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999899999998887776666555544333
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.22 E-value=1.1e-10 Score=123.36 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc--------cchhhhHHHHHHHHHHH
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQL--------ISPVLKAGISTACVIIY 419 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~--------~~~~~~~~~~~i~~~~~ 419 (523)
...++.+...++.+++.+++|+++||+|||++++++.++++++.++.++...... ..........+++..++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 3446666788899999999999999999999999999998888877664321110 00011223355666666
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------CchhHHHHHHHHHHHHHH
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI--------GLAGAFGVYAVVCFISWV 491 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~--------G~~~~f~i~~i~~~i~~v 491 (523)
.++..++..++..++++|+.|++.|+...++.+....+|.+++..+...+.... .|+..+. ...+..+..+
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA-SECIPALLFL 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh-hhhhhhhhhh
Confidence 666666667777788999999999999999999998888888887776665432 2332333 3333334444
Q ss_pred HhheeccCC
Q 009862 492 FVFLRVPET 500 (523)
Q Consensus 492 ~~~~~lpEt 500 (523)
+..+++||+
T Consensus 215 ~~~~~~peS 223 (491)
T 4gc0_A 215 MLLYTVPES 223 (491)
T ss_dssp HHGGGSCCC
T ss_pred hhhhcCCCC
Confidence 555668987
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.10 E-value=2.2e-10 Score=121.33 Aligned_cols=175 Identities=6% Similarity=-0.005 Sum_probs=107.1
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH-----HHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL-----TTIPVLIVSLI 392 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll-----~~~~l~~i~~l 392 (523)
+.....+.|.++.+. .+.+. ....+...+..+..+++.++.++++||+|||+... ++.++.+++++
T Consensus 299 ~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 299 EEQGSVVLATFAAER--------VDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp HGGGGTHHHHHHHHS--------CCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHT
T ss_pred HhhccHHHHHHHHHH--------hccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Confidence 455666777777662 22222 12233445666777888899999999999986554 55555555554
Q ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 393 ILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
++.+.............+ ..+...++.++......+..+.++.|.+|++.|++++|++++..++|.++++.+.+.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~- 447 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPL-WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA- 447 (491)
T ss_dssp TTHHHHHHCCCCTTCCTH-HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-
T ss_pred HHHHHHHhcCCCCCccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444332111000111112 222333333334444456667788999999999999999999999999999999887764
Q ss_pred hCchhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 473 IGLAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 473 ~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
.++...+.+++++++++.++.+++.|+.+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678888888887777777767766554
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.78 E-value=8.6e-10 Score=114.91 Aligned_cols=165 Identities=16% Similarity=0.082 Sum_probs=94.9
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH-
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV- 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~- 395 (523)
++..+..++|.++++ ++|++. ....++.++..++.+++.+++|+++||+|||++++++..+.+++...+.
T Consensus 22 ~~~~~~~~~~~~l~~--------~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~ 92 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHD--------INHISK-SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHTTTHHHHHHT--------TTCCCT-TTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 355667888998876 355555 4566677788899999999999999999999999887766544222111
Q ss_pred --HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 396 --ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT--KVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 396 --~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~--~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
+..... .. .+....+.....+....+. ...+.+..+. +.|+.+++.......+|..++|.+.+++.+
T Consensus 93 ~~~~~~~~-----~~---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 93 FIFGPLLQ-----YN---ILVGSIVGGIYLGFCFNAG-APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HTHHHHHH-----TT---CCHHHHGGGSSTTHHHHTT-HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HH---HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 00 0000000000011111111 1122233332 345666777777788899999999988876
Q ss_pred hhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 472 SIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 472 ~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+|+..|++.++..++..++.++..||+
T Consensus 164 -~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 164 -INNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp -HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred -hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 5787777665555444333333333443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.75 E-value=2.6e-09 Score=108.82 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=90.0
Q ss_pred hhhhhhhchHHHHHh-cCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHH-HHHHHHHH
Q 009862 317 GINGVLYYTPQILEQ-AGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPV-LIVSLIIL 394 (523)
Q Consensus 317 g~~~i~~~~p~il~~-~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l-~~i~~l~l 394 (523)
+.+.+..+.|.++++ .|. +. ........+..++.+++.++.+++.||++|+. ..+..+ ..++.+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~g~---------~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGL---------SS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMW 281 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHH---------HH-HHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 355667777777665 343 22 45556666777888889999999999988732 222222 11111111
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
..... ...+.+...+..+++ ++......+....++.|.+| +.|+++.|+.+....+|.++++.+.+.+.+..+
T Consensus 282 ~~~~~-----~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 282 IPDWF-----GVMNVWTLLVPAALF-FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHH-HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHhhh-----ccccHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11100 001112222222333 33334455666677899999 899999999999999999999999999887766
Q ss_pred chhHHHH
Q 009862 475 LAGAFGV 481 (523)
Q Consensus 475 ~~~~f~i 481 (523)
+...+.+
T Consensus 355 ~~~~~~~ 361 (375)
T 2gfp_A 355 GSLGLLM 361 (375)
T ss_dssp HHHHHHH
T ss_pred ccHHHHH
Confidence 6544443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.29 E-value=1.8e-07 Score=99.69 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=56.3
Q ss_pred HHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------Cc-hhHHHHHHHHHH
Q 009862 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI----------GL-AGAFGVYAVVCF 487 (523)
Q Consensus 419 ~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~----------G~-~~~f~i~~i~~~ 487 (523)
+.++......+..+.++.|.+|++.|++++|+.++..++|.++++.+.+.+.+.. +. ...|++++++++
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHH
Confidence 3333344445666677899999999999999999999999999999999887532 21 222666677777
Q ss_pred HHHHHhheeccCCCCCCHH
Q 009862 488 ISWVFVFLRVPETKGMPLE 506 (523)
Q Consensus 488 i~~v~~~~~lpEtk~~~le 506 (523)
+.+++.+++.++++.++.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 494 LAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHHHHC------------
T ss_pred HHHHHHHHHHHHhccchhh
Confidence 7777777767777665443
No 15
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=26.08 E-value=4.4e+02 Score=27.11 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 358 FLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 358 l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+.+.+...+.-++.++.|+...+....+..++.+++..+.+
T Consensus 176 vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~iyP 216 (482)
T 4aw6_A 176 CILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYA 216 (482)
T ss_dssp HHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445788899988765555444444444444333
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.02 E-value=41 Score=19.07 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=11.3
Q ss_pred HHHHHHHhhCChHH
Q 009862 366 VAMKLMDVAGRRKL 379 (523)
Q Consensus 366 l~g~LsDr~GRR~l 379 (523)
++|.++.+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46789999999964
Done!