Query 009865
Match_columns 523
No_of_seqs 356 out of 1491
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 100.0 2E-28 6.9E-33 219.9 12.4 105 150-254 19-123 (127)
2 3g0l_A Hwalp4, bromodomain adj 100.0 2.9E-28 9.9E-33 215.7 13.1 104 151-256 12-115 (117)
3 2ouo_A HUNK1 protein, bromodom 100.0 2.1E-28 7.1E-33 220.7 11.4 106 149-254 19-127 (130)
4 3p1f_A CREB-binding protein; s 99.9 1E-27 3.4E-32 212.8 13.8 109 150-258 9-118 (119)
5 3d7c_A General control of amin 99.9 7.7E-28 2.6E-32 211.5 12.8 103 150-254 5-107 (112)
6 2d9e_A Peregrin; four-helix bu 99.9 1E-27 3.6E-32 213.5 13.9 108 151-260 6-113 (121)
7 3jvl_A Bromodomain-containing 99.9 3.7E-28 1.3E-32 215.9 9.6 107 149-255 6-115 (120)
8 3q2e_A Bromodomain and WD repe 99.9 2.3E-27 7.7E-32 211.9 13.8 107 151-259 9-116 (123)
9 1e6i_A Transcriptional activat 99.9 8.7E-28 3E-32 214.0 10.4 103 152-256 13-115 (121)
10 3mb3_A PH-interacting protein; 99.9 3.4E-27 1.2E-31 213.9 13.6 107 151-259 20-127 (135)
11 4alg_A Bromodomain-containing 99.9 2.2E-27 7.5E-32 219.9 12.3 105 150-254 30-134 (154)
12 2i7k_A Bromodomain-containing 99.9 4.5E-27 1.5E-31 208.3 13.2 104 150-255 6-109 (117)
13 3fkm_X Signaling protein; brom 99.9 3.8E-27 1.3E-31 220.8 12.7 107 149-255 18-124 (166)
14 3nxb_A CAT eye syndrome critic 99.9 4.7E-27 1.6E-31 207.6 12.4 101 151-253 15-115 (116)
15 2dat_A Possible global transcr 99.9 3.8E-27 1.3E-31 210.4 11.9 103 150-254 11-119 (123)
16 3rcw_A Bromodomain-containing 99.9 1.1E-26 3.9E-31 210.5 14.8 108 151-260 12-119 (135)
17 2grc_A Probable global transcr 99.9 7.8E-27 2.7E-31 210.1 12.8 105 151-257 10-121 (129)
18 3mqm_A Probable histone-lysine 99.9 1.5E-26 5E-31 207.4 13.9 110 151-262 8-123 (126)
19 3mb4_A Protein polybromo-1; PB 99.9 1.1E-26 3.6E-31 207.8 11.6 103 151-255 14-122 (124)
20 3hme_A Bromodomain-containing 99.9 1.5E-26 5.1E-31 206.6 12.4 103 151-255 12-114 (123)
21 2yyn_A Transcription intermedi 99.9 2.2E-26 7.5E-31 208.7 13.5 104 150-256 18-123 (135)
22 3iu5_A Protein polybromo-1; PB 99.9 2E-26 6.9E-31 203.6 12.6 103 152-256 5-113 (116)
23 3ljw_A Protein polybromo-1; al 99.9 2.5E-26 8.5E-31 204.2 13.0 105 151-257 7-117 (120)
24 3k2j_A Protein polybromo-1; PB 99.9 4.3E-26 1.5E-30 205.5 13.4 105 151-257 16-126 (130)
25 3uv4_A Second bromodomain of h 99.9 1.7E-25 5.9E-30 208.0 12.7 109 152-262 29-138 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 3.1E-25 1.1E-29 208.7 10.2 102 151-254 71-172 (174)
27 3tlp_A Protein polybromo-1; PB 99.9 6.5E-25 2.2E-29 202.3 11.1 104 152-257 24-134 (150)
28 3dai_A ATPase family AAA domai 99.9 2E-24 6.9E-29 194.6 13.3 100 151-252 9-112 (130)
29 3o36_A Transcription intermedi 99.9 2.6E-24 8.8E-29 204.5 12.4 103 150-255 79-183 (184)
30 3uv5_A Transcription initiatio 99.9 6.1E-24 2.1E-28 212.9 13.1 109 151-261 13-121 (265)
31 3uv5_A Transcription initiatio 99.9 4.5E-24 1.5E-28 213.9 11.6 109 152-262 136-245 (265)
32 2ro1_A Transcription intermedi 99.9 7.1E-24 2.4E-28 202.6 9.0 99 151-256 75-178 (189)
33 2dkw_A Hypothetical protein KI 99.9 2.4E-23 8.3E-28 187.8 12.0 95 151-252 11-109 (131)
34 3u5n_A E3 ubiquitin-protein li 99.9 3.1E-23 1.1E-27 200.7 12.8 105 149-256 78-202 (207)
35 3aad_A Transcription initiatio 99.9 2.9E-23 9.8E-28 210.8 10.0 107 151-259 46-152 (292)
36 2r0y_A Chromatin structure-rem 99.9 4.3E-22 1.5E-26 203.7 14.7 87 166-254 177-263 (311)
37 3aad_A Transcription initiatio 99.9 3.8E-22 1.3E-26 202.6 13.6 105 156-262 173-278 (292)
38 2r10_A Chromatin structure-rem 99.9 4.1E-22 1.4E-26 207.9 12.1 86 167-254 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 7.8E-20 2.7E-24 190.7 8.9 99 152-254 78-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.3E-19 4.6E-24 185.3 8.7 100 151-254 27-129 (311)
41 2jns_A Bromodomain-containing 99.8 2.1E-19 7.3E-24 151.8 3.5 72 350-421 12-84 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 2.3E-17 7.9E-22 150.4 13.7 101 151-257 6-112 (147)
43 3lqh_A Histone-lysine N-methyl 99.5 7.3E-15 2.5E-19 139.3 8.3 96 151-259 74-169 (183)
44 2lm0_A AF4/FMR2 family member 96.1 0.023 7.8E-07 49.7 8.6 62 354-416 57-119 (125)
45 1td6_A F10_ORF294, hypothetica 52.3 3 0.0001 40.6 0.0 13 408-420 263-275 (306)
46 1gk7_A Vimentin; intermediate 25.6 73 0.0025 22.1 3.6 24 92-115 5-28 (39)
47 2x1l_A Methionyl-tRNA syntheta 23.6 19 0.00064 38.4 0.3 23 15-37 4-26 (524)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=2e-28 Score=219.93 Aligned_cols=105 Identities=32% Similarity=0.564 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 009865 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (523)
..++...|..||..|++|+.+|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999987779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
|+++|.||.+|..|++.|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998754
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=2.9e-28 Score=215.69 Aligned_cols=104 Identities=32% Similarity=0.520 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
...++.|..||..|++|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINE 256 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (523)
++++.+|.+|..|++.|++.|+.++.
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998864
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=2.1e-28 Score=220.69 Aligned_cols=106 Identities=43% Similarity=0.727 Sum_probs=100.8
Q ss_pred CcHHHHHHHHHHHHHHHcCCC---CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009865 149 DNGKLMKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (523)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~~~---s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (523)
.....+++|..||..|+.+++ +|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 446788999999999999885 89999999999888999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 226 AMTYNPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
|++||++++.||.+|..|++.|+..|+.+
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999765
No 4
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=1e-27 Score=212.84 Aligned_cols=109 Identities=35% Similarity=0.543 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHHHHc-CCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 009865 150 NGKLMKNCGQILTKLMK-HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~-~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~ 228 (523)
..++.+.|..+|..|++ ++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.||++
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 37899999999999998 67999999999999777999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009865 229 YNPKDHEVHIIAEQFLARFEELFRPINEKL 258 (523)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 258 (523)
||+++|.+|.+|..|++.|++.|..+...+
T Consensus 89 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887654
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=7.7e-28 Score=211.46 Aligned_cols=103 Identities=26% Similarity=0.411 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 009865 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (523)
...|...|..||..|++|+.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
|++++.+|.+|..|++.|++.|+++
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998864
No 6
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=213.54 Aligned_cols=108 Identities=27% Similarity=0.377 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
.++...|..||+.|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5678999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (523)
++++.+|.+|..|++.|+.+|+++...++.
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887753
No 7
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=3.7e-28 Score=215.92 Aligned_cols=107 Identities=43% Similarity=0.718 Sum_probs=101.9
Q ss_pred CcHHHHHHHHHHHHHHHcCCC---CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009865 149 DNGKLMKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (523)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~~~---s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (523)
...+.+++|..||..|+.++. +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009865 226 AMTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (523)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (523)
|++||++++.||.+|..|++.|++.|+.+.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999987653
No 8
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=211.86 Aligned_cols=107 Identities=35% Similarity=0.622 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..|.++|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009865 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (523)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (523)
++ ++.||.+|..|++.|++.|+.+...+.
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999999999988774
No 9
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=8.7e-28 Score=214.02 Aligned_cols=103 Identities=35% Similarity=0.507 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 009865 152 KLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (523)
Q Consensus 152 ~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~ 231 (523)
.+.+.|..||..|++|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||+
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 90 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 457899999999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 009865 232 KDHEVHIIAEQFLARFEELFRPINE 256 (523)
Q Consensus 232 ~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (523)
+++.+|.+|..|++.|++.|+.+..
T Consensus 91 ~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 91 ENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999987643
No 10
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=213.88 Aligned_cols=107 Identities=31% Similarity=0.539 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..|.+.|..||..|+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999866 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009865 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (523)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (523)
++ ++.||.+|..|++.|++.|..+...+.
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 127 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYK 127 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 999999999999999999999988775
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=2.2e-27 Score=219.91 Aligned_cols=105 Identities=30% Similarity=0.524 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 009865 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (523)
...+...|..||+.|++++.+|+|..||++..+++||||++|++||||+||++||+++.|.++.+|+.||+|||.||++|
T Consensus 30 t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
|++++.||.+|..|+++|+..|+.+
T Consensus 110 N~~~s~i~~~A~~L~~~f~~~~~~l 134 (154)
T 4alg_A 110 NKPTDDIVLMAQTLEKIFLQKVASM 134 (154)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998755
No 12
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=4.5e-27 Score=208.32 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 009865 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (523)
...+.+.|..||+.|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009865 230 NPKDHEVHIIAEQFLARFEELFRPIN 255 (523)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (523)
|++++.+|.+|..|++.|+++|..+.
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 13
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.8e-27 Score=220.83 Aligned_cols=107 Identities=33% Similarity=0.509 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 009865 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (523)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~ 228 (523)
....|.+.|..||..|++++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|+.||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009865 229 YNPKDHEVHIIAEQFLARFEELFRPIN 255 (523)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (523)
||++++.||.+|..|+++|++.|+.+.
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999998763
No 14
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=4.7e-27 Score=207.62 Aligned_cols=101 Identities=27% Similarity=0.442 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
.++.+.|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4588999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 009865 231 PKDHEVHIIAEQFLARFEELFRP 253 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~ 253 (523)
++++.+|.+|..|++.|++.|..
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999863
No 15
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=210.43 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHHHHHHcCC------CCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009865 150 NGKLMKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~------~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif 223 (523)
...+.+.|..||+.|++++ .+|+|.+||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3779999999999999987 5899999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
.||++||++++.||.+|..|++.|++.++.+
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998754
No 16
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=210.46 Aligned_cols=108 Identities=26% Similarity=0.394 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..+...|..||+.|++|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 89 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (523)
++++.+|.+|..|++.|+.+|+.+...++.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 90 ARDTVFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877654
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=7.8e-27 Score=210.09 Aligned_cols=105 Identities=24% Similarity=0.374 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcCC-------CCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009865 151 GKLMKNCGQILTKLMKHK-------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~-------~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif 223 (523)
..+.+.|..||..|++++ .+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 679999999999999886 4899999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009865 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (523)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (523)
.||++||++++.||.+|..|++.|++.|+.+...
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999888654
No 18
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=207.36 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009865 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~------s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (523)
..+.+.|..|++.|++++. +|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999998764 999999999987 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009865 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQED 262 (523)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (523)
||++||++++.+|.+|..|++.|++.|+++...++...
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i~ 123 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEIV 123 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998886543
No 19
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.1e-26 Score=207.77 Aligned_cols=103 Identities=26% Similarity=0.358 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHc------CCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009865 151 GKLMKNCGQILTKLMK------HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~------~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (523)
..+.+.|..||+.|++ ++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999998 455799999999876 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009865 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (523)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (523)
||++||++++.||.+|..|++.|++.|+++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998763
No 20
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=206.65 Aligned_cols=103 Identities=31% Similarity=0.386 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5688999999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPIN 255 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (523)
++++.+|.+|..|++.|++.|.+..
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543
No 21
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=208.73 Aligned_cols=104 Identities=37% Similarity=0.652 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhh
Q 009865 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAM 227 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~--~~Y~s~~eF~~DvrLif~Na~ 227 (523)
....++.|..||..|++|+.+|+|..||+. ++||||++|++||||+||++||++ +.|.++.+|.+||+|||.||+
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~ 94 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999997 389999999999999999999998 599999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009865 228 TYNPKDHEVHIIAEQFLARFEELFRPINE 256 (523)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (523)
+||++++.||.+|..|++.|+++|+.+..
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 95 EFNEPDSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999887753
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=203.62 Aligned_cols=103 Identities=23% Similarity=0.355 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009865 152 KLMKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (523)
Q Consensus 152 ~~~k~c~~iL~~L~~~~------~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (523)
..+++|..||..|++++ .+++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999985 4999999999876 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009865 226 AMTYNPKDHEVHIIAEQFLARFEELFRPINE 256 (523)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (523)
|++||+++|.+|.+|..|++.|++.++++.+
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988764
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=2.5e-26 Score=204.25 Aligned_cols=105 Identities=28% Similarity=0.344 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009865 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~------s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (523)
..+.+.|..||+.|++++. +++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999877 999999999877 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009865 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (523)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (523)
||++||++++.||.+|..|++.|++.|+++..+
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999988654
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.3e-26 Score=205.53 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009865 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~------s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (523)
..+..+|..+++.|.++.. +|+|.+||+... +||||++|++||||+||++||+++.|.++.+|..||+|||.
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 6799999999999998765 999999999876 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009865 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (523)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (523)
||++||++++.||.+|..|++.|++.|+.+...
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988764
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=1.7e-25 Score=207.96 Aligned_cols=109 Identities=29% Similarity=0.454 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHH-HHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 152 KLMKNCGQILTK-LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 152 ~~~k~c~~iL~~-L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
.+...+..|+.. |+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344444555543 666888999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQED 262 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (523)
++++.||.+|..|...|+..|+++..++...+
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le 138 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 138 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776544
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=3.1e-25 Score=208.73 Aligned_cols=102 Identities=31% Similarity=0.531 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
...++.|..||..|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||+||++||
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 148 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYN 148 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5678899999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
++++.+|.+|..|+++|++.|+.+
T Consensus 149 ~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 149 PSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988643
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=6.5e-25 Score=202.28 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCC-------CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009865 152 KLMKNCGQILTKLMKHKL-------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (523)
Q Consensus 152 ~~~k~c~~iL~~L~~~~~-------s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (523)
....+|..||..|+++.. +++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 346778888888887654 899999999877 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009865 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (523)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (523)
||++||++++.||.+|..|++.|++.|+++...
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999887543
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=2e-24 Score=194.56 Aligned_cols=100 Identities=27% Similarity=0.360 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..+...|..++..|+.++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN 86 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5688899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHH----HHHHHHHHHHHHHHHH
Q 009865 231 PKDHEV----HIIAEQFLARFEELFR 252 (523)
Q Consensus 231 ~~~s~v----~~~A~~L~~~Fe~~~~ 252 (523)
++++++ +.+|..|++.|..+++
T Consensus 87 ~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 87 PDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999876 6788888888887775
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=2.6e-24 Score=204.50 Aligned_cols=103 Identities=37% Similarity=0.658 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhh
Q 009865 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAM 227 (523)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~--~~Y~s~~eF~~DvrLif~Na~ 227 (523)
...+++.|..||..|+.++.+++|..||+.. +||||++|++||||+||++||++ +.|.++.+|.+||+|||+||+
T Consensus 79 ~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 79 TPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999853 89999999999999999999998 789999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009865 228 TYNPKDHEVHIIAEQFLARFEELFRPIN 255 (523)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (523)
+||++++.||.+|..|+++|+++|+.++
T Consensus 156 ~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998763
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.1e-24 Score=212.95 Aligned_cols=109 Identities=29% Similarity=0.483 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..+...|..||..|++++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||+||++||
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcC
Confidence 5789999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQE 261 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~ 261 (523)
++++.||.+|..|.+.|++.|+.+..++...
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ 121 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEKEDKLARL 121 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999887766543
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=4.5e-24 Score=213.91 Aligned_cols=109 Identities=29% Similarity=0.454 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHH-HHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 152 KLMKNCGQILTK-LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 152 ~~~k~c~~iL~~-L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
.+...|..++.. |+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN 213 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 213 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345556666654 788999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQED 262 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (523)
+++|.||.+|..|+..|+..|+.+...+...+
T Consensus 214 ~~~s~~~~~A~~l~~~~~~~~~~~~~~~~~~e 245 (265)
T 3uv5_A 214 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 245 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888775433
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=7.1e-24 Score=202.57 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHh
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIK--NPMDLGTVKSKLSKN---LYDSPASFAADVRLTFNN 225 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk--~PMDL~TIk~KL~~~---~Y~s~~eF~~DvrLif~N 225 (523)
...+++|..||..|+.|+.+|+|.+||+ |+||++|+ +||||+||++||+++ .|.++++|++||+|||+|
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 5567899999999999999999999998 67999998 899999999999999 999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009865 226 AMTYNPKDHEVHIIAEQFLARFEELFRPINE 256 (523)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (523)
|++|| +++.+|.+|..|+++|++.|+++..
T Consensus 149 ~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 149 FNKLT-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHC-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 5899999999999999999988754
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=187.79 Aligned_cols=95 Identities=29% Similarity=0.459 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
.++...|..||..|+.++.+++|..| +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN 83 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 67889999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCCCH----HHHHHHHHHHHHHHHHH
Q 009865 231 PKDHE----VHIIAEQFLARFEELFR 252 (523)
Q Consensus 231 ~~~s~----v~~~A~~L~~~Fe~~~~ 252 (523)
+++|+ |+.+|..|++.|...++
T Consensus 84 ~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 84 PDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99985 57899999998888764
No 34
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=3.1e-23 Score=200.66 Aligned_cols=105 Identities=38% Similarity=0.594 Sum_probs=98.8
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHh
Q 009865 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK---NLYDSPASFAADVRLTFNN 225 (523)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~---~~Y~s~~eF~~DvrLif~N 225 (523)
....+++.|..||..|++++.+++|..||+. ++||||++|++||||+||++||++ |.|.++.+|..||+|||+|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999986 399999999999999999999997 7999999999999999999
Q ss_pred hhhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 009865 226 AMTYNP-----------------KDHEVHIIAEQFLARFEELFRPINE 256 (523)
Q Consensus 226 a~~YN~-----------------~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (523)
|++||+ +++.|+.+|..|+.+|+.+|++++.
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 9999999999999999999988753
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=2.9e-23 Score=210.84 Aligned_cols=107 Identities=30% Similarity=0.496 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
..+...|..||..|+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||+||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 5578899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLM 259 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (523)
++++.+|.+|..|.+.|++.|+.+..++.
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 152 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEKEDKLA 152 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 99999999999999999999987665543
No 36
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=4.3e-22 Score=203.75 Aligned_cols=87 Identities=31% Similarity=0.398 Sum_probs=83.6
Q ss_pred cCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 009865 166 KHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLA 245 (523)
Q Consensus 166 ~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~ 245 (523)
.|+.+|+|.+||+... +||||+||++||||+||++||++|.|.++.+|..||+|||+||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3567999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 009865 246 RFEELFRPI 254 (523)
Q Consensus 246 ~Fe~~~~~i 254 (523)
.|+.+|+..
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999873
No 37
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=202.60 Aligned_cols=105 Identities=30% Similarity=0.479 Sum_probs=95.3
Q ss_pred HHHHHH-HHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 009865 156 NCGQIL-TKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 234 (523)
Q Consensus 156 ~c~~iL-~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s 234 (523)
.+..++ ..|+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||++++
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344444 34788999999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009865 235 EVHIIAEQFLARFEELFRPINEKLMQED 262 (523)
Q Consensus 235 ~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (523)
.||.+|..|++.|+..+..+..++...+
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l~~le 278 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHLTQLE 278 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887775433
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=4.1e-22 Score=207.91 Aligned_cols=86 Identities=30% Similarity=0.391 Sum_probs=83.2
Q ss_pred CCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 009865 167 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLAR 246 (523)
Q Consensus 167 ~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~ 246 (523)
|+.+|+|..|||... +||||+||++||||+||++||++|.|.++.+|..||+|||+||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 568999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 009865 247 FEELFRPI 254 (523)
Q Consensus 247 Fe~~~~~i 254 (523)
|+.+|+.+
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=7.8e-20 Score=190.67 Aligned_cols=99 Identities=23% Similarity=0.218 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHcCC--CCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhhhh
Q 009865 152 KLMKNCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAMT 228 (523)
Q Consensus 152 ~~~k~c~~iL~~L~~~~--~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~-s~~eF~~DvrLif~Na~~ 228 (523)
.+...|..+|+.|.+.. .+++|..||+... +||||+||++||||+||++|| +.|. ++.+|+.||+|||.||++
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 45678999999987643 4899999999887 999999999999999999999 4555 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 229 YNPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
||++++.||.+|..|+++|+..|...
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988754
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1.3e-19 Score=185.32 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcCC--CCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhhh
Q 009865 151 GKLMKNCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAM 227 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~--~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~-s~~eF~~DvrLif~Na~ 227 (523)
..+...|..+|..+.+.- .+++|.+||+... +||||+||++||||+||++|| +.|. ++.+|..||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 456677777777777633 4899999999887 999999999999999999999 5555 89999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865 228 TYNPKDHEVHIIAEQFLARFEELFRPI 254 (523)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (523)
+||++++.||.+|..|+++|+..|...
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988765
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=2.1e-19 Score=151.82 Aligned_cols=72 Identities=40% Similarity=0.709 Sum_probs=67.4
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChHhHHHHHHHHHhhCCCCCC-CCCeEEEeCCCCCHHHHHHHHHHHHHHHH
Q 009865 350 DPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQ-DEDEIELDIEALDTETLWELDRFVTNYKK 421 (523)
Q Consensus 350 ~~~~r~MT~eEK~~Ls~~I~~Lp~e~l~~Vi~IIk~~~p~~~~-~~dEIELDId~L~~~TL~eL~rfV~~~~k 421 (523)
++.+++||++||++|+.+|+.||+++|.+||+||++++|.+.+ +++|||||||+|++.|||+|++||.+|++
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~ 84 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLR 84 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999874 67999999999999999999999999965
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=150.42 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009865 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~------s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (523)
..+...+..|+..|+++++ +.+|...++.. |+||. ++||+|.+|++||..|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4577888999999999875 78999988876 68998 999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009865 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (523)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (523)
||.+||.+||.||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999888665
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.54 E-value=7.3e-15 Score=139.29 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 009865 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (523)
Q Consensus 151 ~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (523)
.++...+..||..|..++.+|+|+. |. ++.||||.||++||++|.|.++.+|..||+|||+||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~-----------y~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLR-----------YR--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHT-----------CC--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhh-----------hh--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 5677788999999999999999976 22 5999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009865 231 PKDHEVHIIAEQFLARFEELFRPINEKLM 259 (523)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (523)
..++.+..++..|+.+|+++++.++.++.
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988875
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=96.08 E-value=0.023 Score=49.66 Aligned_cols=62 Identities=18% Similarity=0.426 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHhcCCC-hHhHHHHHHHHHhhCCCCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q 009865 354 REMSMEEKHKLGIGLQSLP-QEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFV 416 (523)
Q Consensus 354 r~MT~eEK~~Ls~~I~~Lp-~e~l~~Vi~IIk~~~p~~~~~~dEIELDId~L~~~TL~eL~rfV 416 (523)
..=-.+|-+.|-..|-.|. .+.|.+||++|.+ .+++...+..+.||+.+||..|+++|+.|+
T Consensus 57 ~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~-tG~~~it~~tfDFDLc~LD~~Tv~klq~~l 119 (125)
T 2lm0_A 57 DKAYLDELVELHRRLMTLRERHILQQIVNLIEE-TGHFHITNTTFDFDLCSLDKTTVRKLQSYL 119 (125)
T ss_dssp SCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHT-SCCEEECSSCEEECTTTSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh-cCceeeecccccceeeccCHHHHHHHHHHH
Confidence 3445789999999999996 5569999999988 456666778999999999999999999997
No 45
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=52.32 E-value=3 Score=40.57 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 009865 408 TLWELDRFVTNYK 420 (523)
Q Consensus 408 TL~eL~rfV~~~~ 420 (523)
--..+..||.++.
T Consensus 263 LA~~I~QYv~n~~ 275 (306)
T 1td6_A 263 LAAKIYEYVSQIV 275 (306)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 3457788887763
No 46
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=25.65 E-value=73 Score=22.10 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 009865 92 KKELFELKNRLISELEQIRQLKNR 115 (523)
Q Consensus 92 ~~e~~~l~~RL~~eLeqvr~l~~~ 115 (523)
+.++..|-.||...+++||.|...
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~ 28 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQ 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999988653
No 47
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=23.55 E-value=19 Score=38.39 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=13.7
Q ss_pred CCccCCCCCcccccCCCCCCCCC
Q 009865 15 PMQTKGSGPKFMGKAPNPNPKKR 37 (523)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (523)
||||+||...|.|-.|-||||.+
T Consensus 4 ~~~~~~~~~~~~i~t~~P~~ng~ 26 (524)
T 2x1l_A 4 HHHHHGGSEPFYITTAIAYPNGV 26 (524)
T ss_dssp -------CCEEEEEECCBCCSSC
T ss_pred cccccCCCCCEEEeeCCCCCCCC
Confidence 35778888999999998999854
Done!