BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009867
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10
PE=2 SV=1
Length = 514
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/513 (80%), Positives = 459/513 (89%), Gaps = 1/513 (0%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVA 59
M+ TL GLL V +F +RALSVSGKF+LT++R+H+L+ERAASRLV+ AGI GDVVA
Sbjct: 1 MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSDAGIKPGDVVA 60
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
LTFPNTVEFVIMFLAVIRARATAAPLNAAYT +EFEFYLSDS+SKLLLT EGNA AQ A
Sbjct: 61 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQEA 120
Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
ASKL ISH TATLLDA S+L LS+A S+S ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTATLLDAGSDLVLSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
PLTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG+LAGLLSS AGAAVTLPAAGRF
Sbjct: 181 PLTQLNLASSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PE YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRL 300
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G QE K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFD+DGYLHLVGRIKELINRGGEK
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGGEK 420
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
ISPIEVDAVLL+HPD++Q VAFGVPD+KYGEEINCA+IPREG+ + EE++ FCKKN+AA
Sbjct: 421 ISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKNLAA 480
Query: 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512
FKVPKRVFIT+ LPKTASGKIQRRIV++HFL +
Sbjct: 481 FKVPKRVFITDNLPKTASGKIQRRIVAQHFLEK 513
>sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1827.03c PE=1
SV=1
Length = 512
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/514 (49%), Positives = 336/514 (65%), Gaps = 17/514 (3%)
Query: 10 LNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
L I +S RAL + S +L++S + + ++ + GI GD V + PN +EF
Sbjct: 6 LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEF 65
Query: 69 VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA----AASKLN 124
V+ F AV RA PLN+ Y EFEFY+ D +SKL++ P EG+ AA AA KL+
Sbjct: 66 VVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVIVP-EGSVAANTPAVRAAKKLS 124
Query: 125 ISHATATLLDADSELTLSLAHSE-SDTNAISKL-TNDPSDVALFLHTSGTTSRPKGVPLT 182
+ A A L + + H E + NA L P DV L LHTSGTT RPK VPLT
Sbjct: 125 V--AVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPDDVMLVLHTSGTTGRPKVVPLT 182
Query: 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
NL S+ NI + Y+L D++ +V+PLFHVHG+L GLLS+ A+G +P +FSA
Sbjct: 183 HKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCGLLSTLASGGCAVVPP--KFSAH 240
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
+FW++ I+Y ATWYTAVPTIHQI+L KP P++RFIRSCS+ LAP +LS+LE
Sbjct: 241 SFWKEFIQYGATWYTAVPTIHQILLRTPPPKP---LPRIRFIRSCSSPLAPPVLSKLEAT 297
Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
F APVLEAYAMTEA+H M++NPLP HKP SVG+P G E+ ILD+ G G +GE+
Sbjct: 298 FRAPVLEAYAMTEASHQMTTNPLPPLV-HKPHSVGKPFGVELKILDQKGNEMPQGKEGEI 356
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
C+RG NVTKGY NNP ANKS+F +F TGD G D DGY+ + GRIKEL+NRGGEKIS
Sbjct: 357 CVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGEKIS 416
Query: 422 PIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481
P E+DAVL+ HPD+++AV F VPD+KYG++I AI P G + +++ + ++ VAAFK
Sbjct: 417 PAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTPKQLHDYLEQKVAAFK 476
Query: 482 VPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515
+PK+ + T+ +PKTA+GK+QRR+V + F A
Sbjct: 477 IPKKFYFTDRIPKTATGKVQRRLVCDAFFNHSKA 510
>sp|P38137|FAT2_YEAST Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCS60 PE=1 SV=1
Length = 543
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/480 (46%), Positives = 295/480 (61%), Gaps = 35/480 (7%)
Query: 56 DVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA 115
D VA++ N +EF++ FL APLN Y EF FYL+D +SK + P +G
Sbjct: 63 DTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVP-KGTTK 121
Query: 116 AQAAASKLNISHATATLLDADSELTLSLAHSESDT---------------NAISKLTNDP 160
Q+ S++ S +T + + E D N + +P
Sbjct: 122 LQS--SEILKSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNP 179
Query: 161 ---------SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
SDVAL LHTSGTTS PK VPL N+ S NI + YKLT D + +V+PL
Sbjct: 180 VKFPGFARSSDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPL 239
Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
FHVHG++ LLS+F +V +P F FW +KYN W++ VPTI I+L+ +
Sbjct: 240 FHVHGLIGVLLSTFRTQGSVVVPDG--FHPKLFWDQFVKYNCNWFSCVPTISMIMLN--M 295
Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPH 331
KP P +P +RFIRSCS++LAP +LE+ F APVLEAYAMTEA+H M+SN LP G
Sbjct: 296 PKPNP-FPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPP-GKR 353
Query: 332 KPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--GWF 389
KPG+VG+P G + ILD+ G GEV IRG NVT GY NNP+ANK F +F
Sbjct: 354 KPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYF 413
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
TGD GYFD +G+L L GRIKELINRGGEKISPIE+D ++LSHP I +AVAFGVPDD YG
Sbjct: 414 RTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYG 473
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
+ + AI+ ++G + EE++ F KK++A+FK+P +V+ ++LPKTA+GKIQRR+++E F
Sbjct: 474 QVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAETF 533
>sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2
SV=1
Length = 509
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 242/463 (52%), Gaps = 14/463 (3%)
Query: 49 AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT 108
AAG+ +G V++ PN + + L + P+N P + + L+ S+++L+ T
Sbjct: 57 AAGLGSGQTVSVYLPNGEQTARLLLGTMACGLVVNPINLLCQPAQLRYILAHSDTRLVFT 116
Query: 109 PAEGNAAAQAAASKLNIS-HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFL 167
+G AA + A + + T DA+S L H + + AL +
Sbjct: 117 WPDGEAAIREALREAGLDVPVLVTAPDANSLPALPATHDAASPLPPPQPDA----PALLM 172
Query: 168 HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
+TSGTT PKGV LTQ NL A+ +N+ + L +D + LPL+H++G++ ++
Sbjct: 173 YTSGTTGTPKGVLLTQRNLVANGTNVSREHCLGPADRVLATLPLYHINGLVVTAIAPLVH 232
Query: 228 GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL-DRHVAKPEPVYPKLRFIRS 286
G +V +P RFSAS FWQD ++ TW VPTI +L D H P V RF RS
Sbjct: 233 GGSVVMPM--RFSASAFWQDSARHGCTWLNVVPTIIAYLLNDPHGQAPAGV----RFCRS 286
Query: 287 CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAI 346
SA+L P E FG V+E MTE SNPL + G + GS+GRP G +
Sbjct: 287 ASAALPPEHHRAFEARFGIGVIETMGMTETAAPAFSNPL-DPGQRRIGSIGRPSGTRARV 345
Query: 347 LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHL 405
L G P G GE+ ++G +V GY P+ + AF GW TGD+GY D+DGY ++
Sbjct: 346 LGRDGKPAPDGQVGEIVLQGESVMAGYYKAPDITREAFTHDGWLRTGDLGYRDADGYFYI 405
Query: 406 VGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465
GR KELI +GGE I+P E+D LL HP + +A A GVPD YG+EI ++ RE + D
Sbjct: 406 SGRAKELIIKGGENIAPREIDEALLRHPGVLEAAAVGVPDPAYGQEIVAYVVMREAARCD 465
Query: 466 EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508
+ + C + + +K PK ELP+ SGK+QR + H
Sbjct: 466 DAALRAHCLRELGRYKTPKEFRFIAELPRGPSGKVQRLKLLNH 508
>sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168)
GN=lcfB PE=2 SV=2
Length = 513
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 269/509 (52%), Gaps = 21/509 (4%)
Query: 14 IDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVI 70
+++ +S++ S++ +F +TY ++E ++R A L AG+ GD +AL N+ +F+I
Sbjct: 7 LEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFII 66
Query: 71 MFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL-----LTPAEGNAAAQAAASKLNI 125
F ++A P+N YTP E + L++ + K + L P + +L I
Sbjct: 67 AFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVI 126
Query: 126 SHAT--ATLLDADSELTLSLAHSESDTNAISKLTND----PSDVALFLHTSGTTSRPKGV 179
T A AD E+ + + S + P D A+ L+TSGTT +PKG
Sbjct: 127 LCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTSGTTGKPKGA 186
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
LT NL ++ +++ + E D+ V LP+FHV + + + +GA V + +F
Sbjct: 187 MLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGATVLIEP--QF 244
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
S ++ ++ + + AT + VPT++ + K + + +R S AS+ +L+
Sbjct: 245 SPASVFKLVKQQQATIFAGVPTMYNYLFQHENGKKDD-FSSIRLCISGGASMPVALLTAF 303
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGA 358
EE FG +LE Y ++EA+ + NP D KPGS+G + E ++D +G
Sbjct: 304 EEKFGVTILEGYGLSEASPVTCFNPF--DRGRKPGSIGTSILHVENKVVDPLGRELPAHQ 361
Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGE 418
GE+ ++GPNV KGY P + A GW +TGD+ D DGY ++V R K++I GG
Sbjct: 362 VGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGY 421
Query: 419 KISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA 478
+ P EV+ VL SHPD+ +AV GVPD + GE + ++P+ S + EE++++ C+K++A
Sbjct: 422 NVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKR-SGVTEEDIMQHCEKHLA 480
Query: 479 AFKVPKRVFITNELPKTASGKIQRRIVSE 507
+K P + +++PK A+GK+ RR + +
Sbjct: 481 KYKRPAAITFLDDIPKNATGKMLRRALRD 509
>sp|O53306|FAC13_MYCTU Long-chain-fatty-acid--CoA ligase FadD13 OS=Mycobacterium
tuberculosis GN=fadD13 PE=1 SV=1
Length = 503
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 258/489 (52%), Gaps = 23/489 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY++++ L R A L A GI GD VAL PN+VEF +F + A A P+N
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E F LSDS SK+++ A A ++ + + ADS L L + +D
Sbjct: 90 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 148
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
A+ +D ++TSGTT PKGV T ++ ++ S+ S + D ++ LP
Sbjct: 149 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 205
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV + + F+A VTL + +F A+ W +++ AVP I + R
Sbjct: 206 MFHVAALTTVI---FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 260
Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
V + E P R+ + A + P L ++ A V++ YA+TE+ T L+S
Sbjct: 261 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 315
Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
ED K GS GR + ++A+ + GV +E G +GEV I+ + K Y N PEA + AF
Sbjct: 316 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
GWF TGDIG D +GYL++ R+K++I GGE + P E+++V++ P +++ G+P
Sbjct: 374 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLP 433
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRI 504
D+K+G EI AI+ + + + E++++ +C +A +K+PK+V +P+ +GKI + +
Sbjct: 434 DEKWG-EIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTV 492
Query: 505 VSEHFLAQV 513
+ E + A V
Sbjct: 493 LREQYSATV 501
>sp|Q65FT5|MENE_BACLD 2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=menE PE=3 SV=1
Length = 478
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/493 (33%), Positives = 246/493 (49%), Gaps = 37/493 (7%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
+ + R + G LT+ ++ ++ A RL + G+ GD AL N +E VI A
Sbjct: 14 ELTPDRMAVIQGDHKLTFIQLFHEAKKTAGRLKSFGLKNGDTAALLLTNRMEMVIAVHAC 73
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA---EGNAAAQAAASKLNISHATATL 132
LN + E + + SE+KLLLT E + Q A + ++I
Sbjct: 74 FLLGVRIVLLNTKLSMAERSYQIEHSEAKLLLTEKPFIEEHRGGQPARA-VDIEDVQNAA 132
Query: 133 LDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVS 191
+E I + D D A ++TSGTT RPKGV T N+ ++VS
Sbjct: 133 CPPVTE--------------IESIHLD--DAATIMYTSGTTGRPKGVMQTFANHYFSAVS 176
Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
+ ++ L E D +I LPLFH+ G L+ L S G V L RF A + +
Sbjct: 177 SALNL-GLQEHDRWLIALPLFHISG-LSALFKSVIYGMTVVLHQ--RFDAEEVLRSIKDQ 232
Query: 252 NATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA--PVLE 309
T + ++ Q +L R AK + LR + P LS LEE PV++
Sbjct: 233 QVT----IASVVQTMLSRLAAKVDRCPGSLRCLLLGGG---PAPLSLLEECKRKRLPVVQ 285
Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNV 369
+Y MTE +++ PE K GS G+P+ +++ G + G GE+ ++GP V
Sbjct: 286 SYGMTETCSQIATLA-PEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVKGPTV 344
Query: 370 TKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429
KGY N ANK +F GWF TGDIGYFD DG+L+++ R +LI GGE I P EV+AVL
Sbjct: 345 MKGYLKNEAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVL 404
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT 489
LSHP++A+A GV D +G+ + ++ S +DEEE+ FCK+ +A++KVPK
Sbjct: 405 LSHPNVAEAGVKGVDDKTWGKVPHAYLVA--DSPVDEEELSEFCKERLASYKVPKAFHFV 462
Query: 490 NELPKTASGKIQR 502
+ LP+ AS K+ R
Sbjct: 463 DRLPRNASNKLMR 475
>sp|A8ALR6|CAIC_CITK8 Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC
PE=3 SV=1
Length = 517
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 237/486 (48%), Gaps = 22/486 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ +A+GI GD VAL N EF + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFLASGIQKGDNVALHLDNCPEFFFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAH-SESD 149
+E + L +S ++L++T AE + + + L+ ++ + +++H S+
Sbjct: 98 REESAWILQNSRAQLIVTSAEFYPMYRQILLEDDTLLNHICLIGENAPVEDNVSHFSQLK 157
Query: 150 TNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
+ L P D A L TSGTTSRPKGV +T NL + L E D
Sbjct: 158 DQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSSWQCALREDDVY 217
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
+ V+P FH+ +++F+AG+ L ++SA FW + KY AT +P + +
Sbjct: 218 LTVMPAFHIDCQCTAAMAAFSAGSTFVL--IEKYSARAFWGQVRKYRATVTECIPMMIRT 275
Query: 266 VLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
++ A PE LR F + S ++R FG +L +Y MTE T +
Sbjct: 276 LM-VQPASPEERQHCLREVMFYLNLSVQEKDAFIAR----FGVRLLTSYGMTE-TIVGII 329
Query: 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPE 378
P D P S+GRP E I DE G GE+CI+G + K Y PE
Sbjct: 330 GDRPGDKRRWP-SIGRPGFCYEADIRDEQNRSLPAGEIGEICIKGVPGKTIFKEYYARPE 388
Query: 379 ANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
A A GW HTGD GY D +G+ + V R +I RGGE +S IE++ ++ +HP I
Sbjct: 389 ATAKALEANGWLHTGDSGYRDEEGFFYFVDRRCNMIKRGGENVSCIELENIISAHPKIQD 448
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
V G+ D E I ++ EG + EEE FC++N+A FKVP + I N+LP+ S
Sbjct: 449 IVVIGIHDSIRDEAIKAFVVLNEGETLTEEEFFAFCEQNMAKFKVPSFLEIRNDLPRNCS 508
Query: 498 GKIQRR 503
GKI ++
Sbjct: 509 GKIIKK 514
>sp|B4EY25|CAIC_PROMH Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis
(strain HI4320) GN=caiC PE=3 SV=1
Length = 518
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 163/518 (31%), Positives = 251/518 (48%), Gaps = 31/518 (5%)
Query: 6 LIGLLNQVIDQFSSKRAL---SVSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALT 61
L + + + + + K AL S GK +YS ++E + RAA+ A GI GD VAL
Sbjct: 9 LRQMWDDLAEVYDKKTALIFESAQGKVRQFSYSELNEEINRAANLFHACGIKKGDHVALH 68
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
N EF + + + A P+NA + +E + ++ ++ ++T + Q
Sbjct: 69 LDNCPEFFFCWFGLAKIGAVMVPINARFMYEESAWIINHCQAHFVVTSDNFSPIYQPM-- 126
Query: 122 KLNISHATATLLDADSELTLSLAH------SESDTNAISKLTNDP---SDVALFLHTSGT 172
L+ H+ T L +E L SE + ++ + P D A L TSGT
Sbjct: 127 -LHDKHSPLTQLFLITENCLPTEQGVVDFLSEKAKHPVTLNHHTPLSVDDTAEILFTSGT 185
Query: 173 TSRPKGVPLTQNNL--AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230
TS+PKGV +T NL A S+ ++ L E D + V+P FH+ L +F+ GA
Sbjct: 186 TSQPKGVVITHYNLRFAGYYSSWQNA--LREDDIYLTVMPAFHIDCQCTASLPAFSVGAT 243
Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290
L ++SA FW+ ++KY AT +P + + ++ + V+ P+ KLR + +
Sbjct: 244 FVL--LEKYSARAFWKQILKYQATVTECIPMMMRTLMAQPVS-PDEKQHKLREVMF-YLN 299
Query: 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDE 349
LA E F +L +Y MTE + + P D P S+GRP + I D+
Sbjct: 300 LADEEKDAFIERFNVRLLTSYGMTETIVGLIGD-RPGDKRRWP-SIGRPGFCYQAQIRDK 357
Query: 350 IGVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHL 405
G GE+C++G P T K Y N P+A + A GW HTGD GY D +G+ +
Sbjct: 358 QNQQVPNGVVGEICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYF 417
Query: 406 VGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465
V R +I RGGE +S IE++ ++ SHP I GVPDD E I ++ +G +
Sbjct: 418 VDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLS 477
Query: 466 EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
EE FC++N+A FKVP V LP+ SGK+ ++
Sbjct: 478 EEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKK 515
>sp|Q5KVX9|MENE_GEOKA 2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus (strain
HTA426) GN=menE PE=3 SV=1
Length = 490
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 241/491 (49%), Gaps = 30/491 (6%)
Query: 17 FSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
F + ++VS G+ T++ ++E A RL AG+ GD+VAL N +E + + A+
Sbjct: 13 FLTPERIAVSDGRRTKTFAELYEAAAVWARRLAQAGVKEGDIVALLMKNRIEMIEIIHAL 72
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
A N T E + L DS ++L + E A LD
Sbjct: 73 FFLGARVLLQNVRLTSYELGWQLDDSGARLAIADEE-----------------LAGSLDG 115
Query: 136 DSE-LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
D LT+ + + + K T D +VA ++TSGTT PKGV T N S
Sbjct: 116 DGRVLTVGAVAALPEVDVSLKETCDLEEVATIMYTSGTTGTPKGVLQTYGNHWWSAVGSA 175
Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT 254
L E D + +PLFH+ G L+ + S G + L + + W +++ + T
Sbjct: 176 LNLGLHERDCWLAAVPLFHISG-LSIAMRSVIYGMPMRLQTSFDPKEANEW--IMRGDVT 232
Query: 255 WYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
+ ++ +L R VA+ E YP AP L + G PV + Y M
Sbjct: 233 ----IMSVVAAMLQRMVAELGEARYPDTFRCMLLGGGPAPRPLLEACKEKGIPVYQTYGM 288
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372
TE +++ PE K GS G+P+ E+ IL + G P GE+ ++GPNVTKG
Sbjct: 289 TETASQIATLA-PEYSLTKLGSAGKPLFPAELCILKD-GKPAAPHEAGEIVVKGPNVTKG 346
Query: 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432
Y PEA A GWF TGDIGY D DG+L+++ R +LI GGE + P EV+AVLLSH
Sbjct: 347 YWQRPEATAQAIRGGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSH 406
Query: 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNEL 492
PD+ +A GV ++ +G+ + + G++ DE + FC++ +A +KVP R++ +EL
Sbjct: 407 PDVEEAGVTGVENETWGQVPYAFVRLKRGASPDEAALRAFCRERLAKYKVPARIYFVDEL 466
Query: 493 PKTASGKIQRR 503
P+ A+ K+ RR
Sbjct: 467 PRNAAQKLLRR 477
>sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168)
GN=lcfA PE=3 SV=1
Length = 560
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 166/540 (30%), Positives = 255/540 (47%), Gaps = 50/540 (9%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
TL +L +F K A+S GK LT+ I + A+ L G+ GD VA+ PN
Sbjct: 25 TLQSILTDSAARFPDKTAISFYGK-KLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPN 83
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT-----PAEGNAAAQAA 119
+ VI + V+ A N YT E E+ L D++ +++T P +
Sbjct: 84 CPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSI 143
Query: 120 ASKLNISHATATL-----------------LDADSEL---TLSLAHSESDTNAISKLTND 159
++ I+ L +D D T + + T ++ D
Sbjct: 144 VDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKID 203
Query: 160 PS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVI-VLPLFHVHG 216
P D+A+ +T GTT PKGV LT N+ A+ + +Y + E V+ ++P FHV+G
Sbjct: 204 PEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKEGAEKVLGIVPFFHVYG 263
Query: 217 MLAGLLSSFAAG-AAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE 275
+ A + S G + LP +F + + K+ T + PTI+ I L H PE
Sbjct: 264 LTAVMNYSIKLGFEMILLP---KFDPLETLKIIDKHKPTLFPGAPTIY-IGLLHH---PE 316
Query: 276 PVYPKLRFIRSC---SASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
+ L I+SC SA+L + + E+ G ++E Y ++EA+ + +N + G +K
Sbjct: 317 LQHYDLSSIKSCLSGSAALPVEVKQKFEKVTGGKLVEGYGLSEASPVTHANFI--WGKNK 374
Query: 333 PGSVGRPVGQEIAIL-----DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG 387
PGS+G P A + E+ P E GE+ ++GP V KGY N PE + G
Sbjct: 375 PGSIGCPWPSTDAAIYSEETGELAAPYE---HGEIIVKGPQVMKGYWNKPEETAAVLRDG 431
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
W TGD+GY D +G+ ++ R K++I GG I P EV+ L H I + V GVPD
Sbjct: 432 WLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSY 491
Query: 448 YGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
GE + ++ ++G+ D EE+ F + +A +KVPK ELPKTA GKI RR + E
Sbjct: 492 RGETVKAFVVLKKGAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLE 551
>sp|A9MYJ6|CAIC_SALPB Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiC PE=3
SV=1
Length = 517
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 228/487 (46%), Gaps = 24/487 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDADSELT-LSLAH 145
+E + L +S+ LL+T A+ Q ++ LN L AD ++ +
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQRQ 157
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
S T D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 SRQSTTLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDDVY 217
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P + +
Sbjct: 218 MTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMIRT 275
Query: 266 VLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 276 LMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVGII 329
Query: 323 NPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNP 377
P D P S+GR VG E I D+ P G GE+CI+G + K Y P
Sbjct: 330 GDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQP 387
Query: 378 EANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA 436
EA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP I
Sbjct: 388 EATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQ 447
Query: 437 QAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTA 496
V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 448 DIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNC 507
Query: 497 SGKIQRR 503
SGKI ++
Sbjct: 508 SGKIIKK 514
>sp|B4T6J6|CAIC_SALNS Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella newport
(strain SL254) GN=caiC PE=3 SV=1
Length = 517
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 161/489 (32%), Positives = 230/489 (47%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ I+E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASINEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T A+ Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVLLE--KYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|B4TWR4|CAIC_SALSV Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
schwarzengrund (strain CVM19633) GN=caiC PE=3 SV=1
Length = 517
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 161/489 (32%), Positives = 230/489 (47%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ A GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYALGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T A+ Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|B5BL55|CAIC_SALPK Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
paratyphi A (strain AKU_12601) GN=caiC PE=3 SV=1
Length = 517
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 234/489 (47%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFHSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDADSELTL--SLA 144
+E + L +S+ LL+T A+ Q ++ LN L AD ++L L
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQGNSTPLNHICLIGEQLPADDGVSLFSQLQ 157
Query: 145 HSESDTNAIS-KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
+S T + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DAAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVLLE--KYSARAFWGQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|Q5PIL0|CAIC_SALPA Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=caiC PE=3
SV=1
Length = 517
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 234/489 (47%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFHSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDADSELTL--SLA 144
+E + L +S+ LL+T A+ Q ++ LN L AD ++L L
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQGNSTPLNHICLIGEQLPADDGVSLFSQLQ 157
Query: 145 HSESDTNAIS-KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
+S T + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DAAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVLLE--KYSARAFWGQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|Q8ZRX4|CAIC_SALTY Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=caiC PE=3 SV=1
Length = 517
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/486 (32%), Positives = 230/486 (47%), Gaps = 22/486 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T A+ Q ++ LN L AD S T
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPVLSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323
+ ++ + A P LR + +L+ E FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMF-YLNLSEQEKDDFTERFGVRLLTSYGMTE-TIVGIIG 330
Query: 324 PLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPE 378
P D P S+GR VG E I D+ P G GE+CI+G + K Y PE
Sbjct: 331 DRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPE 388
Query: 379 ANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
A A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP I
Sbjct: 389 ATAKALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQD 448
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+ S
Sbjct: 449 IVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS 508
Query: 498 GKIQRR 503
GKI ++
Sbjct: 509 GKIIKK 514
>sp|B4TIH0|CAIC_SALHS Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
heidelberg (strain SL476) GN=caiC PE=3 SV=1
Length = 517
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/486 (32%), Positives = 230/486 (47%), Gaps = 22/486 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T A+ Q ++ LN L AD S T
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPVLSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323
+ ++ + A P LR + +L+ E FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMF-YLNLSEQEKDDFTERFGVRLLTSYGMTE-TIVGIIG 330
Query: 324 PLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPE 378
P D P S+GR VG E I D+ P G GE+CI+G + K Y PE
Sbjct: 331 DRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPE 388
Query: 379 ANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
A A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP I
Sbjct: 389 ATAKALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQD 448
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+ S
Sbjct: 449 IVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS 508
Query: 498 GKIQRR 503
GKI ++
Sbjct: 509 GKIIKK 514
>sp|B5F750|CAIC_SALA4 Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella agona
(strain SL483) GN=caiC PE=3 SV=1
Length = 517
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 156/484 (32%), Positives = 228/484 (47%), Gaps = 18/484 (3%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDADSELT-LSLAH 145
+E + L +S+ LL+T A+ Q ++ LN L AD ++ +
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQLQ 157
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
S T D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 SRQSTTLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDDVY 217
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P + +
Sbjct: 218 MTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMIRT 275
Query: 266 VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
++ + A P LR + +L+ E FG +L +Y MTE T +
Sbjct: 276 LMVQPAA-PTDRQHHLREVMF-YLNLSEQEKDDFTERFGVRLLTSYGMTE-TIVGIIGDR 332
Query: 326 PEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEAN 380
P D P S+GR VG E I D+ P G GE+CI+G + K Y PEA
Sbjct: 333 PGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEAT 390
Query: 381 KSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAV 439
A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP I V
Sbjct: 391 ARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIV 450
Query: 440 AFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGK 499
G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+ SGK
Sbjct: 451 VVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGK 510
Query: 500 IQRR 503
I ++
Sbjct: 511 IIKK 514
>sp|B5FHG5|CAIC_SALDC Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella dublin
(strain CT_02021853) GN=caiC PE=3 SV=1
Length = 517
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 230/489 (47%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T A+ Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPVLSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|Q8Z9L4|CAIC_SALTI Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhi
GN=caiC PE=3 SV=1
Length = 517
Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 228/489 (46%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYYLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T A+ Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLM-VQPATPTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|B5R1R0|CAIC_SALEP Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
enteritidis PT4 (strain P125109) GN=caiC PE=3 SV=1
Length = 517
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/486 (32%), Positives = 229/486 (47%), Gaps = 22/486 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T + Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSVQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + KY AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323
+ ++ + A P LR + +L+ E FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMF-YLNLSEQEKDDFTERFGVRLLTSYGMTE-TIVGIIG 330
Query: 324 PLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPE 378
P D P S+GR VG E I D+ P G GE+CI+G + K Y PE
Sbjct: 331 DRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPE 388
Query: 379 ANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
A A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP I
Sbjct: 389 ATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQD 448
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+ S
Sbjct: 449 IVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS 508
Query: 498 GKIQRR 503
GKI ++
Sbjct: 509 GKIIKK 514
>sp|Q57TJ0|CAIC_SALCH Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
choleraesuis (strain SC-B67) GN=caiC PE=3 SV=1
Length = 517
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 229/489 (46%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T + Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSVQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + +Y AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVLLE--KYSARAFWDQVRRYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|C0Q4L3|CAIC_SALPC Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella
paratyphi C (strain RKS4594) GN=caiC PE=3 SV=1
Length = 517
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 229/489 (46%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ + GI GD VAL N EF+ + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
+E + L +S+ LL+T + Q ++ LN L AD S +
Sbjct: 98 GEESAWILQNSQVSLLVTSVQFYPMYREIHQDNSTPLNHICLIGEQLPADDGVSHFSQLQ 157
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
A + L+ D D A L TSGTTSRPKGV +T NL + L + D
Sbjct: 158 ARQSATLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ V+P FH+ + +F+AG+ L ++SA FW + +Y AT +P +
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVLLE--KYSARAFWDQVRRYQATVTECIPMMI 273
Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+ ++ + A P LR F + SA R FG +L +Y MTE T +
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327
Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKN 375
P D P S+GR VG E I D+ P G GE+CI+G + K Y
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385
Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
PEA A GW HTGD GY D DGY + V R +I RGGE +S +E++ ++ +HP
Sbjct: 386 QPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPK 445
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
I V G+ D E I I+ EG + E E FC+ N+A FKVP + I +LP+
Sbjct: 446 IQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPR 505
Query: 495 TASGKIQRR 503
SGKI ++
Sbjct: 506 NCSGKIIKK 514
>sp|Q8GB18|CAIC_PROSL Probable crotonobetaine/carnitine-CoA ligase OS=Proteus sp. (strain
LE138) GN=caiC PE=3 SV=1
Length = 518
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 156/516 (30%), Positives = 245/516 (47%), Gaps = 27/516 (5%)
Query: 6 LIGLLNQVIDQFSSKRAL---SVSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALT 61
L + + + + + K AL S GK +YS ++E + RAA+ A GI GD VAL
Sbjct: 9 LRQMWDDLAEVYDKKTALIFESAQGKVRQFSYSELNEEINRAANLFHACGIKKGDHVALH 68
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
N EF + + + A P+NA + +E + ++ ++ ++T + Q
Sbjct: 69 LDNCPEFFFCWFGLAKIGAVMVPINARFMYEESAWIINHCQAHFVVTSDNFSPIYQPM-- 126
Query: 122 KLNISHATATLLDADSELTLSLAH------SESDTNAISKLTNDP---SDVALFLHTSGT 172
L+ H+ T L +E L SE + ++ + P D A L TSGT
Sbjct: 127 -LHDKHSPLTQLFLITENCLPTEQGVVDFLSEKAKHPVTLNHHTPLSVDDTAEILFTSGT 185
Query: 173 TSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT 232
TS+PKGV +T NL + L E D + V+P FH+ L +++ GA +
Sbjct: 186 TSQPKGVVITHYNLRIAGYYSSWQNALREDDIYLTVMPAFHIDCQCTASLPAYSVGATIV 245
Query: 233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLA 292
L ++SA W+ ++KY AT +P + + + + V+ P+ KLR + S +LA
Sbjct: 246 L--LEKYSARASWKQILKYQATVTECIPMMMRTSMAQPVS-PDEKQHKLREVMS-YLNLA 301
Query: 293 PVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIG 351
E +L ++ MTE + + P D P S+GRP + I D+
Sbjct: 302 DKEKDASIERLNVRLLTSHGMTETIVGLIGD-RPGDKRRWP-SIGRPGFCYQAQIRDKQN 359
Query: 352 VPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVG 407
G GE+C++G + K Y N P+A + A GW HTGD GY D +G+ + V
Sbjct: 360 QQVPNGVVGEICVKGEAGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYRDDEGFFYFVD 419
Query: 408 RIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE 467
R +I RGGE +S IE++ ++ SHP I GVPDD E I ++ +G + EE
Sbjct: 420 RSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEE 479
Query: 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
FC++N+A FKVP V LP+ SGK+ ++
Sbjct: 480 AFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKK 515
>sp|B7UI83|CAIC_ECO27 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1
Length = 517
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 159/517 (30%), Positives = 249/517 (48%), Gaps = 24/517 (4%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S SG + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVSLPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+ GA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSTGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ + ++ + + +LR + +L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPLSANDQQH-RLREVMF-YLNL 299
Query: 292 APVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI 350
+ E FG +L +Y MTE T + P D P S+G+ E I D+
Sbjct: 300 SEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGQAGFCYEAEIRDDH 357
Query: 351 GVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLV 406
P G GE+CI+G + K Y NP+A GW HTGD GY D +G+ + V
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFV 417
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE 466
R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG + E
Sbjct: 418 DRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSE 477
Query: 467 EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
EE FC++N+A FKV + I +LP+ SGKI R+
Sbjct: 478 EEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRK 514
>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica
GN=4CLL1 PE=2 SV=2
Length = 552
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 161/489 (32%), Positives = 243/489 (49%), Gaps = 37/489 (7%)
Query: 50 AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP 109
AG+ GD V L PN V + + F AV A +N YTP E +SD+ +KL++T
Sbjct: 81 AGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQVSDARAKLVITI 140
Query: 110 AEGNAAAQAAASKLNI------SHATATLLDADSELTLSLAHSESDTNAISKLTN----- 158
+ + A +L + ++A A L D+ +TL TN ++ +
Sbjct: 141 SA--LVPKIAGLRLPVILLDDDANAAAASLPPDATVTLY-------TNLVAGVKEADYRR 191
Query: 159 ---DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV--LPLFH 213
SD A L++SGTT KGV LT N A+ + S V + LP+FH
Sbjct: 192 PPIKQSDTAALLYSSGTTGDSKGVILTHRNFIAAARMVTSDQDERREGPNVFLCFLPMFH 251
Query: 214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
+ G+ + G A+ A RF ++ + + ++ T VP + I L +H
Sbjct: 252 IFGLSVITYAQLHRGNAII--AMSRFDINSLMEAVQRHRVTHLFCVPPV-IIALAKHGKA 308
Query: 274 PEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
+ L+FI S +A L ++ + + F + +++ Y MTE ++S PE G +
Sbjct: 309 GKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGYGMTETCGIISLE-YPEKGQAR 367
Query: 333 P-GSVGRPV-GQEIAILDEIGVPQ-EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
GS G V G E I+D + GE+C+RGPNV +GY NN +A + GW
Sbjct: 368 EFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNVMQGYFNNVQATEFTIKQGWL 427
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
HTGD+GYFD G L +V R+KELI G +I+P E++ +LLSHP+I AV PD K G
Sbjct: 428 HTGDLGYFDGGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAKAG 487
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
E ++ S++ E +V +F +K VA +K KRV +PK+ASGKI RR
Sbjct: 488 EVPIAYVVRSPDSSLTEVDVQKFIEKQVAYYKRLKRVTFVGSVPKSASGKILRR----QL 543
Query: 510 LAQVSAAKV 518
+AQV ++K+
Sbjct: 544 IAQVRSSKL 552
>sp|B7L4G0|CAIC_ECO55 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
(strain 55989 / EAEC) GN=caiC PE=3 SV=2
Length = 517
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPSDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B6HYY8|CAIC_ECOSE Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
(strain SE11) GN=caiC PE=3 SV=2
Length = 517
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 250/523 (47%), Gaps = 36/523 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK--LTNDPSDVALFLHTS 170
Q A++L T L AD ++ L + + T + LT+D +++ L TS
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEI---LFTS 182
Query: 171 GTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230
GTTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 183 GTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGAT 242
Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290
L ++SA FW + KY AT +P + + ++ +P + +R
Sbjct: 243 FVL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFY 296
Query: 291 LAPVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEI 344
L LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 297 LN---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEA 351
Query: 345 AILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSD 400
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +
Sbjct: 352 EIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEE 411
Query: 401 GYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE 460
G+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ E
Sbjct: 412 GFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471
Query: 461 GSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
G + EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 472 GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B7M0D4|CAIC_ECO8A Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O8
(strain IAI1) GN=caiC PE=3 SV=2
Length = 517
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVVNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|A7ZVY7|CAIC_ECOHS Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O9:H4 (strain HS) GN=caiC PE=3 SV=2
Length = 517
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|A9MQH7|CAIC_SALAR Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiC PE=3
SV=1
Length = 517
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 160/521 (30%), Positives = 242/521 (46%), Gaps = 42/521 (8%)
Query: 10 LNQVIDQ----FSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVVALT 61
L Q+ D + K AL S +G+ +Y+ ++ + R A+ + GI GD VAL
Sbjct: 9 LRQMWDDLAGIYEDKTALIFESCAGEVQHFSYASLNREINRTANLFYSLGIRKGDNVALH 68
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNAAAQ 117
N EF+ + + + A P+NA +E + L +S + LL+T A Q
Sbjct: 69 LDNCPEFIFCWFGLAKIGAIVVPINARLLREESAWILQNSRTSLLVTSAPFYPMYRQIQQ 128
Query: 118 AAASKLNISHATATLLDADSELT--LSLAHSESDTNAIS-KLTNDPSDVALFLHTSGTTS 174
+ L+ L A+ ++ +L + D + LT P D A L TSGTTS
Sbjct: 129 EGRTPLSHICLIGPTLPAEEGVSHFYTLKAQQPDVLLYTPPLT--PDDTAEILFTSGTTS 186
Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
RPKGV +T NL + L E D + V+P FH+ +++F+ GA L
Sbjct: 187 RPKGVVITHYNLRFAGYYSSWQCALREDDVYLTVMPAFHIDCQCTAAMAAFSVGATFVL- 245
Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL-------DRHVAKPEPVYPKLRFIRSC 287
++SA FW + KY AT +P + + ++ DRH E ++
Sbjct: 246 -IEKYSARAFWGQVRKYCATVTECIPMMIRTLMTQTPAADDRHHCLREVMF--------- 295
Query: 288 SASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAI 346
+L+ E FG + +Y MTE T + P D P S+GRP E I
Sbjct: 296 YLNLSVQEKEAFTERFGVRLFTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRPGFCYEAEI 353
Query: 347 LDEIGVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGY 402
+E G GE+CI+G P T K Y P+A A GW HTGD GY D +G+
Sbjct: 354 RNEQNRALPPGEIGEICIKGIPGKTLFKSYFERPDATAKALEPNGWLHTGDSGYRDEEGF 413
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS 462
+ V R ++ RGGE +S +E++ ++ HP I V G+ DD E I ++ EG
Sbjct: 414 FYFVDRRCNMVKRGGENVSCVELENIIAGHPKIQDVVVIGIKDDIRDEAIKAFVVLNEGE 473
Query: 463 NIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EE+ FC++N+A FKVP + I +LP+ SGKI ++
Sbjct: 474 TLTEEDFFTFCEENMAKFKVPSYLEIREDLPRNCSGKIIKK 514
>sp|Q3Z5X2|CAIC_SHISS Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei
(strain Ss046) GN=caiC PE=3 SV=2
Length = 517
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R + GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTTNLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ A+P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATVTECIPMMIRTLM----AQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B1IRD9|CAIC_ECOLC Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=caiC PE=3 SV=2
Length = 517
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 167/523 (31%), Positives = 250/523 (47%), Gaps = 36/523 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLCEESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATVTECIPMMIRTLM----VQPPSANDQQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG--QEI 344
LS E E FG +L +Y MTE T + P D P S+GR VG E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGR-VGFCYEA 351
Query: 345 AILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSD 400
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +
Sbjct: 352 EIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEE 411
Query: 401 GYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE 460
G+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ E
Sbjct: 412 GFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471
Query: 461 GSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
G + EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 472 GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|Q83MG9|CAIC_SHIFL Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri
GN=caiC PE=3 SV=2
Length = 517
Score = 208 bits (529), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI G+ V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGNKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E E+ L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESEWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYMTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQAQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPSDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|A7ZHC8|CAIC_ECO24 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2
Length = 517
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 247/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQAQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B7LWM8|CAIC_ESCF3 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=caiC PE=3 SV=2
Length = 517
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 249/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + +++ A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLVKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVELPADDGVSSFTQLKNQQPVTLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P V + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATVTECIPMMIRTLM----VQPPSVNDRQHHLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPQATARVLEADGWLHTGDTGYRDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE FC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 EILSEEEFFNFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B7MNP4|CAIC_ECO81 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O81 (strain ED1a) GN=caiC PE=3 SV=2
Length = 517
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 166/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S SG + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYVLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q AS+L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDASELRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDQQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 ICDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE FC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B1LFX0|CAIC_ECOSM Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1
Length = 517
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 164/520 (31%), Positives = 250/520 (48%), Gaps = 30/520 (5%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLR---FIRSCS 288
L ++SA FW + KY AT +P + + ++ + + + + +LR F + S
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDQQH-RLREVMFYLNLS 300
Query: 289 ASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAIL 347
A R FG +L +Y MTE T + P D P S+GR E I
Sbjct: 301 AQEKDAFCER----FGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAEIR 354
Query: 348 DEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYL 403
D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G+
Sbjct: 355 DDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFF 414
Query: 404 HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463
+ V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 415 YFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET 474
Query: 464 IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 475 LSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B7JDD6|MENE_BACC0 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH820)
GN=menE PE=3 SV=1
Length = 482
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 227/474 (47%), Gaps = 30/474 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+T+ ++HE V L G+ G VA+ N +E + + A+ A A A LN +
Sbjct: 29 VTFMQLHEKVVSVCEHLTHVGVKRGQKVAVLMKNGIEMITVIHALSYAGAVAVLLNTRLS 88
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+E + + D+E L+T + A S + + E +L A +
Sbjct: 89 REELLWQMDDAEVICLVTDQDFEAKDIPVYSFAEVMNGPKEEASIQEEFSLREAMT---- 144
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
++TSGTT +PKGV LT N AS L + D + +P
Sbjct: 145 ---------------IIYTSGTTGKPKGVILTYGNHWASAVGSSLNLGLRDDDCWLACMP 189
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV G L+ L+ + G + L ++ A + + T + V + +L+R
Sbjct: 190 MFHVGG-LSLLMKNIMYGMRILL--VPKYDADFIHKALQTRGVTIISVVSKMLTDLLER- 245
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
E YP AP L G PV + Y MTE + + + L D
Sbjct: 246 --LGEGTYPSSLRCMLLGGGPAPKPLLETCVDKGIPVYQTYGMTETSSQICT--LSADYM 301
Query: 331 -HKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
K GS G+P+ Q +++ GV A+GE+ ++GPNVT GY N +A + GW
Sbjct: 302 LTKVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVKGPNVTGGYFNREDATRETIQNGWL 361
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
HTGD+GY D +G+L+++ R +LI GGE I P +++ VLLSHP +A+A G+ DDK+G
Sbjct: 362 HTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWG 421
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ A + + G I EEE+L FC++ +A +KVPK+ ELP+ AS K+ RR
Sbjct: 422 -QVPAAFVVKSG-EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRR 473
>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1
Length = 547
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 159/508 (31%), Positives = 250/508 (49%), Gaps = 30/508 (5%)
Query: 14 IDQFSSKRALSVSGKFD--LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIM 71
I +FSS+ L ++G D TY+ + + A L GI D + + PN+ EFV
Sbjct: 40 ISEFSSRPCL-INGANDQIYTYAEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFA 98
Query: 72 FLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT 131
F+ A + N +TP E S +K+++T + + AS+ ++
Sbjct: 99 FMGASYLGAISTMANPLFTPAEVVKQAKASSAKIIITQSCFVGKVKDYASENDVK---VI 155
Query: 132 LLDADSELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV 190
+D+ E L + ++SD + I ++ P DV ++SGTT PKGV LT L SV
Sbjct: 156 CIDSAPEGCLHFSELTQSDEHEIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV 215
Query: 191 SNI-----KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFW 245
+ ++Y +E D + VLPLFH++ + + LL GAA+ + +F + F
Sbjct: 216 AQQVDGENANLYMHSE-DVLMCVLPLFHIYSLNSILLCGLRVGAAILI--MQKFDIAPFL 272
Query: 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-- 303
+ + KY + VP I + + L +R+ + AP + LE+A
Sbjct: 273 ELIQKYKVSIGPFVPPIVLAIAKSPIVDSY----DLSSVRTVMSGAAP-LGKELEDAVRT 327
Query: 304 ---GAPVLEAYAMTEATHLMSSNPLPEDGPH--KPGSVGRPV-GQEIAILD-EIGVPQEG 356
A + + Y MTEA +++ P K G+ G V E+ I+D + G
Sbjct: 328 KFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPR 387
Query: 357 GAKGEVCIRGPNVTKGYKNNPEAN-KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINR 415
GE+CIRG + KGY N+PEA ++ GW HTGDIG+ D D L +V R+KELI
Sbjct: 388 NQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKY 447
Query: 416 GGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK 475
G +++P E++A+LL+HP+I+ A + D++ GE ++ GS I E+EV F K
Sbjct: 448 KGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISK 507
Query: 476 NVAAFKVPKRVFITNELPKTASGKIQRR 503
V +K KRVF +PK+ SGKI R+
Sbjct: 508 QVIFYKRVKRVFFVETVPKSPSGKILRK 535
>sp|C3LB87|MENE_BACAC 2-succinylbenzoate--CoA ligase OS=Bacillus anthracis (strain CDC
684 / NRRL 3495) GN=menE PE=3 SV=1
Length = 482
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 227/474 (47%), Gaps = 30/474 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+T+ ++HE V L G+N G VA+ N +E + + A+ A A LN +
Sbjct: 29 VTFMQLHEKVVSVCEHLTHVGVNRGQKVAVLMKNGMEMITVIHALSYVGAVAVLLNTRLS 88
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+E + + D+E L+T + A S + + E +L A +
Sbjct: 89 REELLWQMDDAEVICLVTDQDFEAKDIPVYSFAEVMNGPKEEASIQEEFSLREAMT---- 144
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
++TSGTT +PKGV LT N AS L + D + +P
Sbjct: 145 ---------------IIYTSGTTGKPKGVILTYGNHWASAVGSSLNLGLRDDDCWLACMP 189
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV G L+ L+ + G + L ++ A + + T + V + +L+R
Sbjct: 190 MFHVGG-LSLLMKNIMYGMRILL--VPKYDADFIHKALQTRGVTIISVVSKMLTDLLER- 245
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
E YP AP L G PV + Y MTE + + + L D
Sbjct: 246 --LGEGTYPSSFRCMLLGGGPAPKPLLETCVDKGIPVYQTYGMTETSSQICT--LSADYM 301
Query: 331 -HKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
K GS G+P+ Q +++ GV A+GE+ ++GPNVT GY N +A + GW
Sbjct: 302 LTKVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVKGPNVTGGYFNREDATRETIQNGWL 361
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
HTGD+GY D +G+L+++ R +LI GGE I P +++ VLLSHP +A+A G+ DDK+G
Sbjct: 362 HTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWG 421
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ A + + G I EEE+L FC++ +A +KVPK+ ELP+ AS K+ RR
Sbjct: 422 -QVPAAFVVKSG-EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRR 473
>sp|C3PCK3|MENE_BACAA 2-succinylbenzoate--CoA ligase OS=Bacillus anthracis (strain A0248)
GN=menE PE=3 SV=1
Length = 482
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 227/474 (47%), Gaps = 30/474 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+T+ ++HE V L G+N G VA+ N +E + + A+ A A LN +
Sbjct: 29 VTFMQLHEKVVSVCEHLTHVGVNRGQKVAVLMKNGMEMITVIHALSYVGAVAVLLNTRLS 88
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+E + + D+E L+T + A S + + E +L A +
Sbjct: 89 REELLWQMDDAEVICLVTDQDFEAKDIPVYSFAEVMNGPKEEASIQEEFSLREAMT---- 144
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
++TSGTT +PKGV LT N AS L + D + +P
Sbjct: 145 ---------------IIYTSGTTGKPKGVILTYGNHWASAVGSSLNLGLRDDDCWLACMP 189
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV G L+ L+ + G + L ++ A + + T + V + +L+R
Sbjct: 190 MFHVGG-LSLLMKNIMYGMRILL--VPKYDADFIHKALQTRGVTIISVVSKMLTDLLER- 245
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
E YP AP L G PV + Y MTE + + + L D
Sbjct: 246 --LGEGTYPSSFRCMLLGGGPAPKPLLETCVDKGIPVYQTYGMTETSSQICT--LSADYM 301
Query: 331 -HKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
K GS G+P+ Q +++ GV A+GE+ ++GPNVT GY N +A + GW
Sbjct: 302 LTKVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVKGPNVTGGYFNREDATRETIQNGWL 361
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
HTGD+GY D +G+L+++ R +LI GGE I P +++ VLLSHP +A+A G+ DDK+G
Sbjct: 362 HTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWG 421
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ A + + G I EEE+L FC++ +A +KVPK+ ELP+ AS K+ RR
Sbjct: 422 -QVPAAFVVKSG-EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRR 473
>sp|Q81K97|MENE_BACAN 2-succinylbenzoate--CoA ligase OS=Bacillus anthracis GN=menE PE=3
SV=1
Length = 481
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 227/474 (47%), Gaps = 30/474 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+T+ ++HE V L G+N G VA+ N +E + + A+ A A LN +
Sbjct: 28 VTFMQLHEKVVSVCEHLTHVGVNRGQKVAVLMKNGMEMITVIHALSYVGAVAVLLNTRLS 87
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+E + + D+E L+T + A S + + E +L A +
Sbjct: 88 REELLWQMDDAEVICLVTDQDFEAKDIPVYSFAEVMNGPKEEASIQEEFSLREAMT---- 143
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
++TSGTT +PKGV LT N AS L + D + +P
Sbjct: 144 ---------------IIYTSGTTGKPKGVILTYGNHWASAVGSSLNLGLRDDDCWLACMP 188
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV G L+ L+ + G + L ++ A + + T + V + +L+R
Sbjct: 189 MFHVGG-LSLLMKNIMYGMRILL--VPKYDADFIHKALQTRGVTIISVVSKMLTDLLER- 244
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
E YP AP L G PV + Y MTE + + + L D
Sbjct: 245 --LGEGTYPSSFRCMLLGGGPAPKPLLETCVDKGIPVYQTYGMTETSSQICT--LSADYM 300
Query: 331 -HKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
K GS G+P+ Q +++ GV A+GE+ ++GPNVT GY N +A + GW
Sbjct: 301 LTKVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVKGPNVTGGYFNREDATRETIQNGWL 360
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
HTGD+GY D +G+L+++ R +LI GGE I P +++ VLLSHP +A+A G+ DDK+G
Sbjct: 361 HTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWG 420
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ A + + G I EEE+L FC++ +A +KVPK+ ELP+ AS K+ RR
Sbjct: 421 -QVPAAFVVKSG-EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRR 472
>sp|B5YYD1|CAIC_ECO5E Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1
Length = 517
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 163/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR +
Sbjct: 298 N---LSEQEKDTFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYDAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + + R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|Q8XA34|CAIC_ECO57 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O157:H7 GN=caiC PE=3 SV=2
Length = 517
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 163/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S G + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q A++L T L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHRLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E FG +L +Y MTE T + P D P S+GR +
Sbjct: 298 N---LSEQEKDTFCERFGVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYDAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + + R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|B7N7R2|CAIC_ECOLU Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2
Length = 517
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 247/522 (47%), Gaps = 34/522 (6%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S SG + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q AS+L L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDASQLRHICLIDMALPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ +P + +R L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLM----VQPPSANDRQHCLREVMFYL 297
Query: 292 APVILSRLE-----EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIA 345
LS E E F +L +Y MTE T + P D P S+GR E
Sbjct: 298 N---LSEQEKDAFCERFSVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAE 352
Query: 346 ILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDG 401
I D+ P G GE+CI+G + K Y NP+A GW HTGD GY D +G
Sbjct: 353 IRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEG 412
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
+ + V R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG
Sbjct: 413 FFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG 472
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ EEE RFC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 473 ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
>sp|P23971|MENE_BACSU 2-succinylbenzoate--CoA ligase OS=Bacillus subtilis (strain 168)
GN=menE PE=3 SV=2
Length = 486
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 234/489 (47%), Gaps = 30/489 (6%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
Q + +R + +T++ + +R A +L A + GD A+ N E V A
Sbjct: 14 QLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHAC 73
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
A LN + E F L DS S LLT ++ K H T+ D
Sbjct: 74 FLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLT--------DSSFEKKEYEHIVQTI-DV 124
Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS 195
D EL + + + + + D + A ++TSGTT +PKGV T N S +
Sbjct: 125 D-EL---MKEAAEEIEIEAYMQMDAT--ATLMYTSGTTGKPKGVQQTFGNHYFSAVSSAL 178
Query: 196 VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW 255
+TE D +I LPLFH+ G L+ L S G V L RFS S + ++ T
Sbjct: 179 NLGITEQDRWLIALPLFHISG-LSALFKSVIYGMTVVLHQ--RFSVSDVLHSINRHEVTM 235
Query: 256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAM 313
+AV T+ +L+ PE IR P L LEE G PV ++Y M
Sbjct: 236 ISAVQTMLASLLEETNRCPES-------IRCILLGGGPAPLPLLEECREKGFPVFQSYGM 288
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
TE + + PE K GS G+P+ ++ G E GE+ ++GPNV K Y
Sbjct: 289 TETCSQIVTLS-PEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSY 347
Query: 374 KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433
N AN+++F GW TGD+GY D++G+L+++ R +LI GGE I P EV++VLLSHP
Sbjct: 348 FNRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHP 407
Query: 434 DIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELP 493
+A+A G D K+G+ + ++ + + E+ +CK+ +A +K+P + F+ + LP
Sbjct: 408 AVAEAGVSGAEDKKWGKVPHAYLVLHK--PVSAGELTDYCKERLAKYKIPAKFFVLDRLP 465
Query: 494 KTASGKIQR 502
+ AS K+ R
Sbjct: 466 RNASNKLLR 474
>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7
PE=1 SV=1
Length = 544
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 161/516 (31%), Positives = 248/516 (48%), Gaps = 26/516 (5%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
+L+ L + + SK A++ S D LT+S++ V R A GI DVV + P
Sbjct: 28 SLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSAVARLAHGFHRLGIRKNDVVLIFAP 87
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE-------GNAAA 116
N+ +F + FLAV N YT +E + DS K++++ + +
Sbjct: 88 NSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIKDSNPKIIISVNQLFDKIKGFDLPV 147
Query: 117 QAAASKLNIS---HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTT 173
SK + + + +L D+ + LS SE I + SD A L++SGTT
Sbjct: 148 VLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYPFVEIKQ-----SDTAALLYSSGTT 202
Query: 174 SRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAV 231
KGV LT N A+ + L V + LP+FHV G+ S G A
Sbjct: 203 GTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNA- 261
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L + RF +++ K+ T VP + + + + K + L++I S +A L
Sbjct: 262 -LVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQSIVKKFDL-SSLKYIGSGAAPL 319
Query: 292 APVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD- 348
++ +++ Y MTE ++S P G GS G G E I+
Sbjct: 320 GKDLMEECGRNIPNVLLMQGYGMTETCGIVSVED-PRLGKRNSGSAGMLAPGVEAQIVSV 378
Query: 349 EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVG 407
E G Q +GE+ +RGPN+ KGY NNP+A K W HTGD+GYF+ DG L++V
Sbjct: 379 ETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVD 438
Query: 408 RIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE 467
RIKELI G +++P E++ +L+SHPDI AV PD++ GE ++ S+I E+
Sbjct: 439 RIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQ 498
Query: 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ +F K VA +K +RV + +PK+A+GKI RR
Sbjct: 499 DIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRR 534
>sp|Q8FLA5|CAIC_ECOL6 Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=caiC PE=3
SV=2
Length = 517
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 251/517 (48%), Gaps = 24/517 (4%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL---SVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVV 58
G L + + + D + K AL S SG + +Y +++ + R A+ GI GD V
Sbjct: 6 GQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKV 65
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE----GNA 114
AL N EF+ + + + A P+NA +E + L +S++ LL+T A+
Sbjct: 66 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQ 125
Query: 115 AAQAAASKLNISHATATLLDADSELT--LSLAHSESDTNAISK-LTNDPSDVALFLHTSG 171
Q AS+L T +L AD ++ L + + T + L+ D D A L TSG
Sbjct: 126 IQQEDASQLRHICLTDMVLPADDGVSSFTQLKNQQPATLCYAPPLSTD--DTAEILFTSG 183
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231
TTSRPKGV +T NL + L + D + V+P FH+ +++F+AGA
Sbjct: 184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF 243
Query: 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
L ++SA FW + KY AT +P + + ++ + ++ + + +LR + +L
Sbjct: 244 VL--VEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPLSANDQQH-RLREVMF-YLNL 299
Query: 292 APVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI 350
+ E F +L +Y MTE T + P D P S+GR E I D+
Sbjct: 300 SEQEKDAFCERFSVRLLTSYGMTE-TIVGIIGDRPGDKRRWP-SIGRAGFCYEAEIRDDH 357
Query: 351 GVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLV 406
P G GE+CI+G + K Y NP+A GW HTGD GY D +G+ + V
Sbjct: 358 NRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFV 417
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE 466
R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG + E
Sbjct: 418 DRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSE 477
Query: 467 EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
EE FC++N+A FKVP + I +LP+ SGKI R+
Sbjct: 478 EEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRK 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,335,592
Number of Sequences: 539616
Number of extensions: 8300817
Number of successful extensions: 26467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 22808
Number of HSP's gapped (non-prelim): 1431
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)