Query 009867
Match_columns 523
No_of_seqs 188 out of 1436
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 14:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1E-81 3.5E-86 642.1 51.8 503 3-511 21-535 (536)
2 3r44_A Fatty acyl COA syntheta 100.0 1.7E-81 5.9E-86 637.2 49.3 499 3-514 15-516 (517)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 8.3E-81 2.8E-85 635.5 52.9 505 2-518 23-538 (539)
4 4fuq_A Malonyl COA synthetase; 100.0 4.1E-81 1.4E-85 632.3 48.4 493 8-512 4-501 (503)
5 3etc_A AMP-binding protein; ad 100.0 1.2E-80 4.2E-85 637.8 51.9 504 4-512 55-580 (580)
6 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.9E-80 1.3E-84 626.1 52.8 490 4-510 2-503 (504)
7 3g7s_A Long-chain-fatty-acid-- 100.0 5.1E-81 1.7E-85 638.9 45.4 504 2-515 17-546 (549)
8 2d1s_A Luciferase, luciferin 4 100.0 2.9E-79 1E-83 624.8 52.5 504 4-515 25-547 (548)
9 3ivr_A Putative long-chain-fat 100.0 1.4E-80 4.9E-85 630.5 41.7 499 2-516 4-506 (509)
10 3o83_A Peptide arylation enzym 100.0 6E-81 2E-85 637.2 37.4 501 3-511 29-540 (544)
11 1v25_A Long-chain-fatty-acid-C 100.0 3.2E-80 1.1E-84 631.4 41.6 506 3-515 17-540 (541)
12 3rix_A Luciferase, luciferin 4 100.0 6.3E-80 2.1E-84 631.0 40.5 509 2-517 18-547 (550)
13 3c5e_A Acyl-coenzyme A synthet 100.0 1.3E-78 4.4E-83 622.1 49.7 502 5-513 39-564 (570)
14 1pg4_A Acetyl-COA synthetase; 100.0 4.5E-78 1.5E-82 627.3 52.6 507 5-513 77-623 (652)
15 3fce_A D-alanine--poly(phospho 100.0 1.2E-78 4E-83 616.9 45.3 494 4-514 1-507 (512)
16 2v7b_A Benzoate-coenzyme A lig 100.0 1.7E-77 5.8E-82 610.9 50.5 495 5-507 25-528 (529)
17 3e7w_A D-alanine--poly(phospho 100.0 1.6E-77 5.6E-82 608.0 48.8 492 4-514 1-506 (511)
18 1ry2_A Acetyl-coenzyme A synth 100.0 2.8E-77 9.5E-82 621.3 49.5 508 5-513 83-639 (663)
19 3rg2_A Enterobactin synthase c 100.0 3.9E-77 1.3E-81 617.9 50.2 502 2-515 25-538 (617)
20 1amu_A GRSA, gramicidin synthe 100.0 1.6E-77 5.6E-82 613.0 46.3 482 3-510 38-528 (563)
21 4dg8_A PA1221; ANL superfamily 100.0 1.5E-77 5.2E-82 618.0 43.7 479 3-514 26-516 (620)
22 4gr5_A Non-ribosomal peptide s 100.0 5.6E-78 1.9E-82 618.8 39.2 482 3-508 74-568 (570)
23 3l8c_A D-alanine--poly(phospho 100.0 3.9E-77 1.3E-81 607.4 44.9 496 1-514 1-515 (521)
24 3ipl_A 2-succinylbenzoate--COA 100.0 2.3E-77 7.9E-82 606.1 40.4 488 4-512 1-498 (501)
25 3tsy_A Fusion protein 4-coumar 100.0 5.1E-77 1.7E-81 648.3 40.8 510 3-517 60-588 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 6.9E-77 2.4E-81 601.2 35.1 473 4-507 22-504 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 6.1E-74 2.1E-78 593.4 40.5 499 2-512 9-568 (590)
28 3gqw_A Fatty acid AMP ligase; 100.0 2.3E-73 7.8E-78 588.0 42.4 503 3-519 20-571 (576)
29 3ite_A SIDN siderophore synthe 100.0 2E-74 6.7E-79 592.7 32.3 493 2-514 18-546 (562)
30 2vsq_A Surfactin synthetase su 100.0 1.4E-72 4.9E-77 627.8 44.3 486 3-510 463-959 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 6.4E-60 2.2E-64 476.5 32.0 396 1-408 21-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-53 3.8E-58 411.0 21.0 317 160-514 36-357 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.2E-50 1.4E-54 398.8 24.9 325 158-503 82-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.2E-48 4.1E-53 389.2 24.2 326 158-504 89-437 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 2.9E-48 1E-52 385.7 24.3 325 158-503 87-431 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.6E-30 5.6E-35 252.0 14.8 235 158-418 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 2.2E-14 7.4E-19 111.2 7.1 95 407-503 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 4.6E-14 1.6E-18 109.6 8.0 95 407-502 1-101 (109)
39 4b2g_A GH3-1 auxin conjugating 99.1 1E-09 3.5E-14 109.1 14.6 161 259-443 277-478 (609)
40 4eql_A 4-substituted benzoates 99.1 1.6E-09 5.4E-14 107.6 14.2 143 277-443 295-466 (581)
41 4epl_A Jasmonic acid-amido syn 99.0 2.8E-09 9.7E-14 105.5 15.2 177 259-459 276-488 (581)
42 2y27_A Phenylacetate-coenzyme 93.1 0.77 2.6E-05 44.5 11.9 89 29-118 108-198 (437)
43 2y4o_A Phenylacetate-coenzyme 92.1 1 3.5E-05 43.7 11.4 89 29-118 110-200 (443)
44 3qov_A Phenylacetate-coenzyme 92.1 1.1 3.8E-05 43.3 11.5 89 29-118 104-194 (436)
45 3ipl_A 2-succinylbenzoate--COA 84.4 8.9 0.0003 37.6 12.2 96 17-116 161-265 (501)
46 3rix_A Luciferase, luciferin 4 80.3 7.6 0.00026 38.7 10.0 101 161-268 35-138 (550)
47 3g7s_A Long-chain-fatty-acid-- 80.3 22 0.00075 35.3 13.4 104 160-267 33-139 (549)
48 3hgu_A EHPF; phenazine, antibi 79.5 5.1 0.00017 37.5 8.0 84 29-114 109-217 (369)
49 3ivr_A Putative long-chain-fat 78.8 18 0.00061 35.5 12.1 85 179-266 30-117 (509)
50 3ni2_A 4-coumarate:COA ligase; 77.0 15 0.00051 36.4 10.9 98 159-266 35-135 (536)
51 1mdb_A 2,3-dihydroxybenzoate-A 74.8 22 0.00076 35.1 11.5 97 17-117 180-287 (539)
52 3o83_A Peptide arylation enzym 74.4 19 0.00066 35.7 11.0 97 17-117 189-296 (544)
53 2d1s_A Luciferase, luciferin 4 74.1 11 0.00036 37.7 8.9 94 19-114 192-295 (548)
54 1v25_A Long-chain-fatty-acid-C 73.4 20 0.00068 35.6 10.7 86 179-267 46-134 (541)
55 3etc_A AMP-binding protein; ad 72.4 28 0.00096 34.8 11.7 96 159-261 69-167 (580)
56 1amu_A GRSA, gramicidin synthe 72.1 38 0.0013 33.7 12.5 84 180-266 64-150 (563)
57 3t5a_A Long-chain-fatty-acid-- 72.1 39 0.0013 32.6 12.4 108 159-269 37-149 (480)
58 4gs5_A Acyl-COA synthetase (AM 70.6 25 0.00085 32.6 10.1 79 29-113 55-134 (358)
59 2v7b_A Benzoate-coenzyme A lig 70.5 21 0.0007 35.3 10.1 84 180-266 48-134 (529)
60 1t5h_X 4-chlorobenzoyl COA lig 70.2 30 0.001 33.8 11.1 85 179-266 28-117 (504)
61 3c5e_A Acyl-coenzyme A synthet 69.7 21 0.00071 35.7 9.9 102 159-267 56-161 (570)
62 3r44_A Fatty acyl COA syntheta 68.3 31 0.001 33.9 10.7 97 159-265 29-128 (517)
63 3rg2_A Enterobactin synthase c 68.2 39 0.0013 34.1 11.7 96 18-117 183-289 (617)
64 4fuq_A Malonyl COA synthetase; 65.5 30 0.001 33.8 10.0 80 180-262 28-110 (503)
65 4gr5_A Non-ribosomal peptide s 65.0 54 0.0019 32.6 11.9 80 180-262 100-182 (570)
66 3fce_A D-alanine--poly(phospho 62.9 15 0.00051 36.1 7.2 94 17-113 142-246 (512)
67 3kxw_A Saframycin MX1 syntheta 61.9 75 0.0026 31.6 12.4 102 159-267 24-130 (590)
68 3tbh_A O-acetyl serine sulfhyd 61.5 30 0.001 31.8 8.5 67 45-111 60-127 (334)
69 3e7w_A D-alanine--poly(phospho 60.0 27 0.00092 34.2 8.5 94 17-113 141-245 (511)
70 1ry2_A Acetyl-coenzyme A synth 59.9 47 0.0016 33.9 10.5 97 159-261 95-195 (663)
71 1pg4_A Acetyl-COA synthetase; 57.5 40 0.0014 34.3 9.5 95 160-260 90-187 (652)
72 3tsy_A Fusion protein 4-coumar 57.0 25 0.00086 37.9 8.3 96 159-264 74-172 (979)
73 3gqw_A Fatty acid AMP ligase; 53.1 68 0.0023 31.8 10.3 86 179-267 48-143 (576)
74 3nyq_A Malonyl-COA ligase; A/B 52.6 73 0.0025 31.0 10.2 95 17-116 153-257 (505)
75 3l8c_A D-alanine--poly(phospho 50.4 45 0.0015 32.7 8.3 78 180-260 29-109 (521)
76 3vc3_A Beta-cyanoalnine syntha 49.0 58 0.002 30.0 8.2 65 47-111 77-142 (344)
77 3ite_A SIDN siderophore synthe 46.6 1.6E+02 0.0056 28.9 11.9 97 159-260 33-134 (562)
78 4dg8_A PA1221; ANL superfamily 43.4 98 0.0034 31.2 9.7 78 180-260 52-132 (620)
79 1z7w_A Cysteine synthase; tran 38.7 1.2E+02 0.004 27.5 8.5 65 47-111 57-122 (322)
80 2q3b_A Cysteine synthase A; py 38.3 1.3E+02 0.0045 26.9 8.8 65 46-111 57-122 (313)
81 4aec_A Cysteine synthase, mito 36.6 1.2E+02 0.0042 28.8 8.4 63 48-110 166-229 (430)
82 3tha_A Tryptophan synthase alp 36.5 2E+02 0.007 24.9 9.1 16 164-179 168-183 (252)
83 3ezx_A MMCP 1, monomethylamine 36.4 1.9E+02 0.0065 24.3 10.9 92 203-298 93-194 (215)
84 2pqm_A Cysteine synthase; OASS 36.3 1.3E+02 0.0045 27.5 8.5 64 47-111 69-133 (343)
85 2egu_A Cysteine synthase; O-ac 35.0 1.4E+02 0.0047 26.8 8.4 64 47-111 56-120 (308)
86 4eez_A Alcohol dehydrogenase 1 33.3 1.7E+02 0.0058 26.6 8.9 78 30-110 136-216 (348)
87 2v03_A Cysteine synthase B; py 32.9 2.1E+02 0.0072 25.4 9.2 64 47-111 52-116 (303)
88 1y7l_A O-acetylserine sulfhydr 32.5 1.6E+02 0.0054 26.5 8.4 64 47-111 53-117 (316)
89 1ve1_A O-acetylserine sulfhydr 32.4 2.7E+02 0.0091 24.7 10.4 64 47-111 51-117 (304)
90 1zsy_A Mitochondrial 2-enoyl t 31.6 1.9E+02 0.0064 26.5 8.9 78 30-108 139-222 (357)
91 3ijw_A Aminoglycoside N3-acety 31.4 34 0.0012 30.1 3.3 22 42-63 19-40 (268)
92 3pc3_A CG1753, isoform A; CBS, 31.2 1.6E+02 0.0056 28.8 8.8 62 48-110 105-167 (527)
93 3ri6_A O-acetylhomoserine sulf 29.8 3.6E+02 0.012 25.4 11.9 55 52-108 118-173 (430)
94 1vjk_A Molybdopterin convertin 29.5 1E+02 0.0034 22.0 5.2 45 3-63 36-94 (98)
95 3ju7_A Putative PLP-dependent 29.4 1.1E+02 0.0038 28.3 6.9 61 46-109 69-136 (377)
96 3sma_A FRBF; N-acetyl transfer 29.2 39 0.0013 30.0 3.3 28 29-63 20-47 (286)
97 3tqh_A Quinone oxidoreductase; 29.1 1.4E+02 0.0049 26.8 7.5 75 30-109 125-203 (321)
98 2nyg_A YOKD protein; PFAM02522 29.1 39 0.0013 29.9 3.3 27 30-63 12-38 (273)
99 3dzz_A Putative pyridoxal 5'-p 29.0 2E+02 0.007 26.2 8.8 55 52-109 106-167 (391)
100 1eg5_A Aminotransferase; PLP-d 28.7 2.3E+02 0.008 25.7 9.2 56 53-109 87-146 (384)
101 2jtq_A Phage shock protein E; 27.7 1.4E+02 0.0048 20.2 5.7 45 29-80 22-66 (85)
102 1mdo_A ARNB aminotransferase; 26.2 2E+02 0.0068 26.4 8.2 59 47-109 71-134 (393)
103 2vsq_A Surfactin synthetase su 25.4 2.2E+02 0.0076 31.7 9.4 80 180-262 489-571 (1304)
104 2e18_A NH(3)-dependent NAD(+) 24.9 2.1E+02 0.0073 24.6 7.6 73 31-109 4-82 (257)
105 2e7j_A SEP-tRNA:Cys-tRNA synth 24.1 3.6E+02 0.012 24.2 9.6 55 52-109 90-154 (371)
106 4h1h_A LMO1638 protein; MCCF-l 23.8 3.2E+02 0.011 24.6 8.7 60 51-110 8-86 (327)
107 3dwg_A Cysteine synthase B; su 23.7 2.6E+02 0.0087 25.2 8.1 64 47-111 64-128 (325)
108 3l6b_A Serine racemase; pyrido 23.4 1.3E+02 0.0045 27.5 6.1 59 54-113 75-133 (346)
109 4h27_A L-serine dehydratase/L- 23.0 1.8E+02 0.0061 26.8 7.0 56 59-114 96-151 (364)
110 1h2b_A Alcohol dehydrogenase; 22.7 2.5E+02 0.0085 25.7 8.0 63 46-111 176-240 (359)
111 3a2b_A Serine palmitoyltransfe 22.2 4.5E+02 0.015 24.0 9.9 55 52-110 124-181 (398)
112 3sr3_A Microcin immunity prote 21.4 3.9E+02 0.013 24.3 8.7 60 51-110 9-87 (336)
113 1f0z_A THis protein; ubiquitin 20.9 1.6E+02 0.0055 19.0 4.5 48 3-63 15-62 (66)
114 1o69_A Aminotransferase; struc 20.6 2.5E+02 0.0085 25.9 7.6 59 48-109 65-129 (394)
115 3lvm_A Cysteine desulfurase; s 20.5 5E+02 0.017 23.8 10.5 56 53-109 111-170 (423)
116 3krt_A Crotonyl COA reductase; 20.4 2.8E+02 0.0095 26.4 8.0 56 50-109 224-280 (456)
117 4ej6_A Putative zinc-binding d 20.4 4.9E+02 0.017 23.7 9.6 58 47-108 175-233 (370)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1e-81 Score=642.14 Aligned_cols=503 Identities=31% Similarity=0.466 Sum_probs=435.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.+|+.++|.++++++|+++|+++.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 4799999999999999999999863 478999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-cccccccccCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKLTNDP 160 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (523)
++|++|.++.+++.+++++++++++|++......+............ ..+........+.+. .......+.....+
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM---CVDSAPDGCLHFSELTQADENEAPQVDISP 177 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEE---ESSCCCTTCEETHHHHTSCGGGCCCCCCCT
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEE---EecCCCCCccCHHHHhhccccccccCCCCc
Confidence 99999999999999999999999999998877766655444332211 111111111111111 11111222334578
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH----HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
+++++++|||||||.||+|.++|+++.+.+..... .+++.+++++++.+|++|.+++...++.++..|+++++.+
T Consensus 178 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~- 256 (536)
T 3ni2_A 178 DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP- 256 (536)
T ss_dssp TSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-
T ss_pred cCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-
Confidence 99999999999999999999999999887766543 3467889999999999999999887899999999999987
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccc
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE 315 (523)
.+++..+++.++++++|++.++|+++..+++...... ..++++|.+++||+++++++.+.+++.| ++++++.||+||
T Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 334 (536)
T 3ni2_A 257 -KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334 (536)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGG-SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred -CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccccc-CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence 6789999999999999999999999999988754333 4578999999999999999999999999 899999999999
Q ss_pred cccccccCCC--CCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeee
Q 009867 316 ATHLMSSNPL--PEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH 390 (523)
Q Consensus 316 ~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~ 390 (523)
++.+++.+.. ........+++|+| ++++++++| ++|.+++.|+.|||+++|++++.||+++++.+++.| .+|||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~ 414 (536)
T 3ni2_A 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414 (536)
T ss_dssp GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence 9977654421 12234466789999 799999999 779999999999999999999999999999999999 689999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++...+.++++
T Consensus 415 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 494 (536)
T 3ni2_A 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIK 494 (536)
T ss_dssp EEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred cccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999999888888899999
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 495 ~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 495 QYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp HHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred HHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999999999999999999999999999999988754
No 2
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.7e-81 Score=637.22 Aligned_cols=499 Identities=29% Similarity=0.490 Sum_probs=428.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..|+.++|.++|+++|+++|+++.+. .++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 94 (517)
T 3r44_A 15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94 (517)
T ss_dssp GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 57999999999999999999998752 38999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-cccccccccCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKLTNDP 160 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (523)
++|++|.++.+++.+++++++++++|++......+.................... .+... .......+.....+
T Consensus 95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 169 (517)
T 3r44_A 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD-----SLAERLRSAAADEPAVECGG 169 (517)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHH-----HHHHHHHHCCCCCCCCCCCT
T ss_pred EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcc-----cHHHHhhccCcCCCCCCCCC
Confidence 9999999999999999999999999999887766655544332211111111000 00000 01111122334567
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 240 (523)
+++++++|||||||.||+|.++|+++.+.+..+...+++.++|+++..+|++|..++...++..+ .|+++++.+ .++
T Consensus 170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~--~~~ 246 (517)
T 3r44_A 170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP--QFD 246 (517)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS--SCC
T ss_pred CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC--CCC
Confidence 99999999999999999999999999999999889999999999999999999999877555555 899998877 679
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 320 (523)
+..+++.++++++|++.++|+++..+.+...... .+++++|.+++||+++++++.+.+.+. ++++++.||+||+++.+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE-LDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-CCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCccccc-CCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccce
Confidence 9999999999999999999999999987654322 346899999999999999999999876 99999999999998776
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~ 399 (523)
+.... .+.....+++|+| ++.+++++|+++.+++.| .|||+++|++++.||+++++.+++.|.+|||+|||+|++++
T Consensus 325 ~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~ 402 (517)
T 3r44_A 325 TLLLS-EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD 402 (517)
T ss_dssp EEECG-GGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT
T ss_pred eecCC-ccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC
Confidence 65432 2224456789999 789999999999999988 89999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcC
Q 009867 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479 (523)
Q Consensus 400 ~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 479 (523)
||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.+++ ..++...+.++++++++++|+.
T Consensus 403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~ 481 (517)
T 3r44_A 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLAR 481 (517)
T ss_dssp TSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCG
T ss_pred CeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999888787777777 5566667889999999999999
Q ss_pred CCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 480 ~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
|++|..++++++||+|++||++|++|+++|.+.+.
T Consensus 482 ~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 482 YKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp GGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred CCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999987653
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=8.3e-81 Score=635.47 Aligned_cols=505 Identities=25% Similarity=0.385 Sum_probs=429.8
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+..|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGN-THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45799999999999999999999877 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhcc-cccceeeeecCCccccccccccccccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLN-ISHATATLLDADSELTLSLAHSESDTNAISK 155 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
++|++|.++.+++.+++++++++++|+++.... .........+ +.... ..... ......... .......
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~--~~~~~~~ 176 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII--VAGEA-EEFLPLEDL--HTEPVKL 176 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEE--EESCC-TTSEEGGGC--CCCCCCC
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEE--EcCCc-cchhhhhhc--ccccccc
Confidence 999999999999999999999999999876421 2222222221 11111 11110 000000000 0011112
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~ 234 (523)
....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+++.. .++.++..|+++++.
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 3456789999999999999999999999999999888888889999999999999999999875 688999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
+ .+++..+++.++++++|+++++|+++..+++...... .+++++|.+++||+++++++.+++.+.+|+++++.||+|
T Consensus 257 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~T 333 (539)
T 1mdb_A 257 P--SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMA 333 (539)
T ss_dssp S--SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECT
T ss_pred C--CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCC
Confidence 7 5789999999999999999999999999987654332 357899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccccC-C-cEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeee
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRPV-G-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHT 391 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~~-~-~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~T 391 (523)
|++..+.... .......+++|+|. + .+++++|+++++++.|+.|||+++|++++.||+++++.+++.| .+|||+|
T Consensus 334 E~~~~~~~~~--~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTRLD--DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECCTT--SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccCCC--CcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 9654332211 11112235789983 4 5899999999999999999999999999999999999999999 5899999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+|++++||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+ ...+.+++++
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~ 490 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKA 490 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888888889988873 4567899999
Q ss_pred HHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhcC
Q 009867 472 FCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 472 ~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
+++++ |+.|++|..++++++||+|++||++|++|++++.++++..|.
T Consensus 491 ~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 491 FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFK 538 (539)
T ss_dssp HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcccc
Confidence 99997 999999999999999999999999999999999999987664
No 4
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.1e-81 Score=632.30 Aligned_cols=493 Identities=30% Similarity=0.514 Sum_probs=426.6
Q ss_pred HHHHHHHhhcCCceeEEE--CCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeC
Q 009867 8 GLLNQVIDQFSSKRALSV--SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL 85 (523)
Q Consensus 8 ~~l~~~a~~~p~~~a~~~--~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 85 (523)
++|.+.++++|+++++.. .+++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 578899999999999874 444789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEE
Q 009867 86 NAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVAL 165 (523)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (523)
+|.++.+++.+++++++++++|++......+........... . .............. .............++++++
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~a~ 159 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATV--E-TLGPDGRGSLTDAA-AGASEAFATIDRGADDLAA 159 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEE--E-ECCTTSCSHHHHHH-HTSCSCCCCCCCCTTSEEE
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceE--E-EecCCcccccchhh-hcCCCCcCcCCCCCCCeEE
Confidence 999999999999999999999999876655544433332211 1 11111000000000 0111112223456799999
Q ss_pred EEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHH
Q 009867 166 FLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFW 245 (523)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 245 (523)
++|||||||.||+|.++|+++.+........+++.++|+++..+|++|.+|+...++.++..|+++++.+ .+++..++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~ 237 (503)
T 4fuq_A 160 ILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP--KFDPDKIL 237 (503)
T ss_dssp EEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS--SCCHHHHH
T ss_pred EEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998766778899999999877 67899999
Q ss_pred HHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCC
Q 009867 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325 (523)
Q Consensus 246 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~ 325 (523)
+.++ ++|+++++|+++..+++...... ..++++|.+++||+++++++.+.+.+.+++++++.||+||++..+....
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~- 313 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTK-ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY- 313 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCST-TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccc-cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-
Confidence 9998 89999999999999988765433 4578999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-CCeeeeCceeeEcCCCc
Q 009867 326 PEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGY 402 (523)
Q Consensus 326 ~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~ 402 (523)
......+++|+| ++++++++| ++|++++.|+.|||+++|++++.||+++++.+++.|. +|||+|||+|+++++|.
T Consensus 314 --~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 314 --DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGY 391 (503)
T ss_dssp --SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCE
T ss_pred --CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCc
Confidence 234456789999 799999999 8999999999999999999999999999999999995 89999999999999999
Q ss_pred EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCC
Q 009867 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKV 482 (523)
Q Consensus 403 ~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 482 (523)
+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++..++...+.++++++++++|+.|++
T Consensus 392 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~ 471 (503)
T 4fuq_A 392 VHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKM 471 (503)
T ss_dssp EEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGC
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999999888999999999888888999999999999999999
Q ss_pred CcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 483 PKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 483 p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
|..++++++||+|++||++|++|+++|.+.
T Consensus 472 P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 472 PKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp CSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.2e-80 Score=637.79 Aligned_cols=504 Identities=24% Similarity=0.381 Sum_probs=410.5
Q ss_pred CCHH-HHHHHHHhhcCCceeEEEC----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 4 VTLI-GLLNQVIDQFSSKRALSVS----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 4 ~ti~-~~l~~~a~~~p~~~a~~~~----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
.|+. ++|+.+|+++|+++|+++. +.+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 4666 9999999999999999863 1268999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch--hHHHHHHhhcccc-cceeeeecCCcccccccccc---ccccc-
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN--AAAQAAASKLNIS-HATATLLDADSELTLSLAHS---ESDTN- 151 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~- 151 (523)
|++++|+++.++.+++.+++++++++++|++.+.. ..+.......... ...+.+..........+... .....
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence 99999999999999999999999999999987765 4444443332211 11111111101111111100 00000
Q ss_pred -ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcE
Q 009867 152 -AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230 (523)
Q Consensus 152 -~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 230 (523)
........++++++++|||||||.||+|.++|.++...+.......++.++++++...|++|..+.+..++.++..|++
T Consensus 215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 1111245689999999999999999999999999888777766677889999999999999988887778899999999
Q ss_pred EEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecc
Q 009867 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA 310 (523)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~ 310 (523)
+++.+...+++..+++.++++++|+++++|++++.|++... ...+++++|.+++||+++++++.+++.+.+|+++++.
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~ 372 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL--SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEG 372 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC-----CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc--ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecc
Confidence 99876557899999999999999999999999999987632 2245789999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC-----CCcccccCCChhhhhhhc
Q 009867 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG-----PNVTKGYKNNPEANKSAF 384 (523)
Q Consensus 311 yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~-----~~~~~gy~~~~~~~~~~~ 384 (523)
||+||++..++..+. .....+++|+| ++++++++|++|++++.|+.|||+++| ++++.||+++++.+++.|
T Consensus 373 YG~TE~~~~~~~~~~---~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f 449 (580)
T 3etc_A 373 FGQTETVVTIATFPW---MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW 449 (580)
T ss_dssp ECCTTSSCCEECCTT---SCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE
T ss_pred cccccccceeecCCC---CCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc
Confidence 999999876665432 23466789999 799999999999999999999999997 789999999999999999
Q ss_pred cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 385 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
.+|||+|||+|++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++.++...
T Consensus 450 ~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~ 529 (580)
T 3etc_A 450 HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP 529 (580)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999877544
Q ss_pred C---HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 465 D---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 465 ~---~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+ .++|+++++++|++|++|..++++++||+|++||++|++|++++.++
T Consensus 530 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 530 SDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp CHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred CHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 4 36899999999999999999999999999999999999999988653
No 6
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.9e-80 Score=626.11 Aligned_cols=490 Identities=25% Similarity=0.389 Sum_probs=418.4
Q ss_pred CCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+|+.++|.++++++|+++|+.+.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 589999999999999999999862 2689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEe--cccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLT--PAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP 160 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
+|++|.++.+++.+++++++++++++ +......+.. ...... .+.+.+. ...................+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 152 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ--SGSGAR--IIFLGDL-----VRDGEPYSYGPPIEDPQREP 152 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH--HCCCCE--EEEGGGT-----EETTEECCCSCCCCCCCCCT
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh--ccccce--eEEecch-----hhcCcccccCCccCCCCCCC
Confidence 99999999999999999999999999 6554332211 101111 0000000 00000000001111133467
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhcc--CCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL--TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
+++++++|||||||.||+|.++|+++.+.+......+++ .+++++++.+|++|..++...++.++..|+++++.+ .
T Consensus 153 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~ 230 (504)
T 1t5h_X 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--E 230 (504)
T ss_dssp TSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS--S
T ss_pred CCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC--C
Confidence 899999999999999999999999999988888777888 889999999999999998767889999999999987 5
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
+++..+++.++++++|+++++|+++..+++.... .....++++|.+++||+++++++.+.+.+.+++.+++.||+||++
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM 310 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc
Confidence 7899999999999999999999999999887532 233457899999999999999999999999999999999999994
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCC---CccCCCceeEEEEe-CCCcccccCCChhhhhhhccCCeeeeC
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIG---VPQEGGAKGEVCIR-GPNVTKGYKNNPEANKSAFLFGWFHTG 392 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~TG 392 (523)
...... ....+++|.| ++.+++++|..+ ++++.|+.|||+++ |++++.||+++++.+++.|.+|||+||
T Consensus 311 ~~~~~~------~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TG 384 (504)
T 1t5h_X 311 NSLYMR------QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384 (504)
T ss_dssp EEEEEE------SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred cccccc------CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccC
Confidence 322211 2345678888 789999999777 89999999999999 899999999999999999999999999
Q ss_pred ceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 009867 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472 (523)
Q Consensus 393 D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 472 (523)
|+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++
T Consensus 385 Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~ 464 (504)
T 1t5h_X 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464 (504)
T ss_dssp EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHH
T ss_pred cEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999988777788999999
Q ss_pred HHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 473 CKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 473 ~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++ +|+.|++|+.++++++||+|++||++|++|++++.
T Consensus 465 ~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 465 CRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 998 99999999999999999999999999999998874
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.1e-81 Score=638.93 Aligned_cols=504 Identities=27% Similarity=0.455 Sum_probs=396.5
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCc-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGK-------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
+.+|+.++|.++|+++|+++|+++.++ +++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 96 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYA 96 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999997662 5899999999999999999999999999999999999999999999
Q ss_pred HHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-ccccccc
Q 009867 75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAI 153 (523)
Q Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (523)
|+++|++++|++|.++.+++.+++++++++++|++......+.............. ..... . .+.+. .......
T Consensus 97 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~~ 171 (549)
T 3g7s_A 97 LWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFV--VGGEV-N--SLSEVMDSGSEDF 171 (549)
T ss_dssp HHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEE--ETCSS-S--CHHHHHHHSCSCC
T ss_pred HHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEE--eCCCC-c--CHHHHHhcCcccc
Confidence 99999999999999999999999999999999999887776666555544332221 11110 0 00000 0000111
Q ss_pred ccCCC-CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEE
Q 009867 154 SKLTN-DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT 232 (523)
Q Consensus 154 ~~~~~-~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 232 (523)
..... .++++++++|||||||.||+|.++|.++...+......+++.++|+++..+|++|..++.. ++.++..|++++
T Consensus 172 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~ 250 (549)
T 3g7s_A 172 ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYV 250 (549)
T ss_dssp CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEE
T ss_pred ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEE
Confidence 11122 3489999999999999999999999999999999888999999999999999999999877 888899999999
Q ss_pred eCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC-CCCCCCcceEEeccCCCCHHHHHHHHHH----hC---
Q 009867 233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEA----FG--- 304 (523)
Q Consensus 233 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~----~~--- 304 (523)
+.+ .+++..+++.++++++|+++++|+++..+++...... ..+++++|.+++||+++++++.+.+.+. ++
T Consensus 251 ~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 328 (549)
T 3g7s_A 251 VMG--MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328 (549)
T ss_dssp EES--SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTT
T ss_pred EcC--CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcc
Confidence 877 7799999999999999999999999999988754332 2457899999999999999999999988 66
Q ss_pred CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 305 ~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
+++++.||+||++.+++..... ......++|+| ++++++++| ++|++++.|+.|||+|+|++++.||+++++.+++
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPL--RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGG--GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred ccccceEeccccchhhhcCCcc--ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhh
Confidence 8899999999999877765422 22456788999 799999999 9999999999999999999999999999999999
Q ss_pred hc---cCC--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEE
Q 009867 383 AF---LFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII 457 (523)
Q Consensus 383 ~~---~~~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 457 (523)
.| .+| ||+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++
T Consensus 407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 486 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIV 486 (549)
T ss_dssp SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEE
T ss_pred hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEE
Confidence 98 677 9999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eCCC--CCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 458 PREG--SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 458 ~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
..++ ...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+.-.+
T Consensus 487 ~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 487 LKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp ECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC----------------------
T ss_pred ECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 8876 567889999999999999999999999999999999999999999998876543
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.9e-79 Score=624.84 Aligned_cols=504 Identities=27% Similarity=0.395 Sum_probs=428.6
Q ss_pred CCHHH-HHHHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 4 VTLIG-LLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 4 ~ti~~-~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.|+.+ ++.++++++ +++|+++. +++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47889 899999999 99999974 3478999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc-ccccccccc--cccccccccCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-ELTLSLAHS--ESDTNAISKLTN 158 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 158 (523)
++|++|.++.+++.+++++++++++|+++.....+.......+.....+.+..... .....+... .......+....
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF 183 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccc
Confidence 99999999999999999999999999998876665544433221111111111100 000000000 000000000011
Q ss_pred ------CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhhhcCc
Q 009867 159 ------DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229 (523)
Q Consensus 159 ------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 229 (523)
.++++++++|||||||.||+|.++|+++...+...... +++.++++++..+|++|.+++...++.++ .|+
T Consensus 184 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~ 262 (548)
T 2d1s_A 184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGF 262 (548)
T ss_dssp CCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTC
T ss_pred cccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCc
Confidence 23899999999999999999999999999888776655 67889999999999999999877677778 999
Q ss_pred EEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCcee
Q 009867 230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL 308 (523)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~ 308 (523)
++++.+ .+++..+++.++++++|+++++|+++..+.+...... ..++++|.+++||+++++++.+++.+.| +++++
T Consensus 263 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~ 339 (548)
T 2d1s_A 263 RVVMLT--KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK-YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR 339 (548)
T ss_dssp EEEECC--CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGG-SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCE
T ss_pred EEEEcC--CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccc-ccccceeEEEEcCccCCHHHHHHHHHHcCCCcee
Confidence 999987 6799999999999999999999999999987654322 3478999999999999999999999999 68899
Q ss_pred ccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-c
Q 009867 309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-L 385 (523)
Q Consensus 309 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~ 385 (523)
+.||+||++..++.... .....+++|+| ++.+++++| +++++++.|+.|||+++|++++.||+++++.+.+.| .
T Consensus 340 ~~YG~TE~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 416 (548)
T 2d1s_A 340 QGYGLTETTSAIIITPE---GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416 (548)
T ss_dssp EEEECGGGSSEEEECCT---TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred eccccccccceeeecCc---ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccC
Confidence 99999999977766432 23456789999 799999999 899999999999999999999999999999999999 6
Q ss_pred CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 009867 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465 (523)
Q Consensus 386 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 465 (523)
+|||+|||+|+++++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++.++...+
T Consensus 417 ~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~ 496 (548)
T 2d1s_A 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496 (548)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999888888899999988877778
Q ss_pred HHHHHHHHHhcCcCCCCCc-EEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 466 EEEVLRFCKKNVAAFKVPK-RVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 466 ~~~l~~~~~~~l~~~~~p~-~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
.++++++++++|+.|++|. .++++++||+|++||++|++|++++.+.++.
T Consensus 497 ~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 497 EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 8999999999999999999 9999999999999999999999999887763
No 9
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.4e-80 Score=630.50 Aligned_cols=499 Identities=30% Similarity=0.464 Sum_probs=327.4
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+++|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVDG-VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CcCCHHHHHHHHHHHCCCceEEEECC-cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 57899999999999999999999877 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS 161 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
++|++|.++.+++.+++++++++++|++......+.................+. .......... ............++
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDG-SGPFAPFKDL-ASDTPFSAPEFGAA 160 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCC-CSSCEEGGGT-CCCSCCCCCCCCTT
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCC-CcChhhHhhc-cCCCCCCcCCCCcc
Confidence 999999999999999999999999999988776644433332211111111110 0000000000 11112223345789
Q ss_pred CeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCCh
Q 009867 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241 (523)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 241 (523)
++++++|||||||.||+|.++|+++...+......++++++|+++..+|++|.+++...+...+..|+++++. .+++
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~---~~~~ 237 (509)
T 3ivr_A 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA---KFDP 237 (509)
T ss_dssp SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS---SCCH
T ss_pred ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec---ccCH
Confidence 9999999999999999999999999999999999999999999999999999999887555555555555554 5799
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|+++++|+++..+++... ...+++++.+..+|++ +..+.+.+.+ ++++++.||+||+++++
T Consensus 238 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 311 (509)
T 3ivr_A 238 AQAARDIEAHKVTVMAEFAPMLGNILDQAA---PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLS 311 (509)
T ss_dssp HHHHHHHHHHTCCEEEEETTHHHHHHHHCC---GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred HHHHHHHHHHCCcEEEecHHHHHHHHhccc---ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccccc
Confidence 999999999999999999999999988762 2347899999999986 8888888888 99999999999999876
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~ 399 (523)
+..... .....+|+| ++++++++|+++++++.|+.|||+++|++++.||+++++.+++.|.+|||+|||+|++++
T Consensus 312 ~~~~~~----~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~ 387 (509)
T 3ivr_A 312 TFAPYR----DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA 387 (509)
T ss_dssp EEEEGG----GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT
T ss_pred ccCccc----cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC
Confidence 665422 123448999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccc--ccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 009867 400 DGYLHLVGRI--KELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNV 477 (523)
Q Consensus 400 ~g~~~~~GR~--~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l 477 (523)
+|.+++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++..++...+.++++++++++|
T Consensus 388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L 467 (509)
T 3ivr_A 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLI 467 (509)
T ss_dssp TSCEEEEEEC----------------------------------------------------------------------
T ss_pred CceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 9999999999 99999999999999999999999999999999999988888899999988877778889999999999
Q ss_pred cCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhh
Q 009867 478 AAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516 (523)
Q Consensus 478 ~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~ 516 (523)
+.|++|..++++++||+|++||++|++|++++.+.-.+.
T Consensus 468 ~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 468 ARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp ---------------------------------------
T ss_pred cccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 999999999999999999999999999999998765543
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6e-81 Score=637.24 Aligned_cols=501 Identities=23% Similarity=0.366 Sum_probs=332.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+.|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICGE-RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCC-CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 5789999999999999999999887 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcccccceeeeecCCccc-ccccccccccccccccC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSEL-TLSLAHSESDTNAISKL 156 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 156 (523)
+|+++.++.+++.+++++++++++|++.... .......................... ...+... .........
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 186 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIET-PAETFVDFS 186 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHS-CCSSCCCCC
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhc-ccccccccc
Confidence 9999999999999999999999999987654 22222222211111111111110000 0000000 011111113
Q ss_pred CCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeCC
Q 009867 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA 235 (523)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~~ 235 (523)
...++++++++|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. .++.++..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 446789999999999999999999999999999999999999999999999999999988875 5888999999999987
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE 315 (523)
.+++..+++.++++++|+++++|+++..+++...... ..++++|.+++||+++++++.+.+.+.+++++++.||+||
T Consensus 267 --~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 343 (544)
T 3o83_A 267 --NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAE 343 (544)
T ss_dssp --SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTT
T ss_pred --CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccc
Confidence 5689999999999999999999999999988755432 3468999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeC
Q 009867 316 ATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG 392 (523)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TG 392 (523)
++..+.... ........++|+| ++.+++++|+++++++.|+.|||+++|++++.||+++++.++..| .+|||+||
T Consensus 344 ~~~~~~~~~--~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG 421 (544)
T 3o83_A 344 GLVNYTRLD--DSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421 (544)
T ss_dssp SCEEECCTT--SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEE
T ss_pred ccceeecCC--CchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcC
Confidence 875444322 1111223568888 478999999999999999999999999999999999999999999 68999999
Q ss_pred ceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 009867 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472 (523)
Q Consensus 393 D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 472 (523)
|+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+ ...+.++++++
T Consensus 422 Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~ 500 (544)
T 3o83_A 422 DLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRH 500 (544)
T ss_dssp EEEEECTTSCEEEEEEEC--------------------------------------------------------------
T ss_pred CEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888765 34566789999
Q ss_pred HHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 473 CKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 473 ~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+++ .|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 501 ~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 501 LMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------
T ss_pred HHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 998 799999999999999999999999999999998865
No 11
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.2e-80 Score=631.40 Aligned_cols=506 Identities=25% Similarity=0.384 Sum_probs=386.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEE---CCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~---~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
..|+.++|.++++++|+++|+++ .+++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 46899999999999999999985 234789999999999999999999999999999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCC
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTND 159 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
++++|++|.++.+++.+++++++++++|++++....+...............+..........+........ ......
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 174 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--DPVRVP 174 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC--CCCCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC--CcccCC
Confidence 999999999999999999999999999999877665554443322111111111110000001110000000 012345
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHH--HHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
++++++++|||||||.||+|.++|+++...... ....+++.++|++++.+|++|..++.. ++.++..|+++++.+.
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~- 252 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGP- 252 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTT-
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCC-
Confidence 789999999999999999999999999876655 234567889999999999999998854 7788999999998763
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
.+++..+++.++++++|+++++|+++..|++...... ..++++|.+++||+++++++.+++ +.+|+++++.||+||++
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~ 330 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETS 330 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGS
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccc
Confidence 4689999999999999999999999999987654322 346899999999999999999999 67899999999999999
Q ss_pred cccccCCCCCCC--------CCCCCCcccc-CCcEEEEECCCCCccCC--CceeEEEEeCCCcccccCCChhhhhhhcc-
Q 009867 318 HLMSSNPLPEDG--------PHKPGSVGRP-VGQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAFL- 385 (523)
Q Consensus 318 ~~~~~~~~~~~~--------~~~~~~~g~~-~~~~~~i~d~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~- 385 (523)
.+++........ .....++|+| ++++++++|++|++++. ++.|||+++||+++.||+++++.+++.|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 410 (541)
T 1v25_A 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP 410 (541)
T ss_dssp SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred cceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence 877665422100 0124678999 79999999999999884 36899999999999999999999999996
Q ss_pred CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 009867 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465 (523)
Q Consensus 386 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 465 (523)
+|||+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++. +...+
T Consensus 411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~ 489 (541)
T 1v25_A 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT 489 (541)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988888888888876 44456
Q ss_pred HHHHHHHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 466 EEEVLRFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 466 ~~~l~~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
.+++++++++ +|+.|++|..++++++||+|++||++|++|++++.+++++
T Consensus 490 ~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 540 (541)
T 1v25_A 490 PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG 540 (541)
T ss_dssp -----------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence 7889999999 8999999999999999999999999999999998877654
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=6.3e-80 Score=630.99 Aligned_cols=509 Identities=25% Similarity=0.413 Sum_probs=328.6
Q ss_pred CCCCHHHHHHHHHhhcCCceeEE---EC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALS---VS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~---~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
+..|+.++|.++++++|+++|++ +. +++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 56899999999999999999976 32 237899999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcc-cccccccc---ccc----
Q 009867 78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE-LTLSLAHS---ESD---- 149 (523)
Q Consensus 78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~---- 149 (523)
+|++++|++|.++.+++.+++++++++++|++......+.......+.....+........ ....+... ...
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN 177 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCC
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhcccccccc
Confidence 9999999999999999999999999999999998877766665554432222211111100 00000000 000
Q ss_pred -ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 150 -TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 150 -~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
....+.....++++++++|||||||.||+|.++|+++...+...... +++.+++++++.+|++|.+++.. .+.++
T Consensus 178 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l 256 (550)
T 3rix_A 178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYL 256 (550)
T ss_dssp TTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHH
T ss_pred ccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH-HHHHH
Confidence 01111122345789999999999999999999999998887766544 46788999999999999999865 77889
Q ss_pred hcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC
Q 009867 226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305 (523)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~ 305 (523)
..|+++++.+ .+++..+++.++++++|+++++|+++..+++...... ..++++|.+++||+++++++.+++.+.++.
T Consensus 257 ~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 333 (550)
T 3rix_A 257 ICGFRVVLMY--RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKRFHL 333 (550)
T ss_dssp HHTCEEEECS--SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGG-SCCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred HcCCEEEEeC--CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccc-cCcccccEEEEecCCCCHHHHHHHHHHcCC
Confidence 9999999987 6789999999999999999999999999998765433 457899999999999999999999999987
Q ss_pred c-eeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 306 P-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 306 ~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
. +++.||+||+++.++.... .....+++|+| ++++++++| +++++++.|+.|||+|+|++++.||+++++.++.
T Consensus 334 ~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 410 (550)
T 3rix_A 334 PGIRQGYGLTETTSAILITPE---GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410 (550)
T ss_dssp SCCEEEEECGGGSSEEEECCT---TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred CccccccCcCccccceecCCC---CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhh
Confidence 5 8999999999987776543 23456789999 799999999 7799999999999999999999999999999999
Q ss_pred hc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 383 AF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 383 ~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
.| .+|||+|||+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|+..++
T Consensus 411 ~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~ 490 (550)
T 3rix_A 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490 (550)
T ss_dssp HBCTTSCEEEEEEEEECTTCCEEEC-------------------------------------------------------
T ss_pred hcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC
Confidence 98 78999999999999999999999999999999999999999999999999999999999998888889999998888
Q ss_pred CCCCHHHHHHHHHhcCcCCCCC-cEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhc
Q 009867 462 SNIDEEEVLRFCKKNVAAFKVP-KRVFITNELPKTASGKIQRRIVSEHFLAQVSAAK 517 (523)
Q Consensus 462 ~~~~~~~l~~~~~~~l~~~~~p-~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~ 517 (523)
...+.++++++++++++.++.| ..++++++||+|++||++|++|++++.+...+.+
T Consensus 491 ~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 547 (550)
T 3rix_A 491 KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGK 547 (550)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccccc
Confidence 7778889999999999988655 4699999999999999999999999987665443
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.3e-78 Score=622.08 Aligned_cols=502 Identities=22% Similarity=0.318 Sum_probs=422.1
Q ss_pred CHHHHHHHHHhh-----cCCceeEEECC----cccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHH
Q 009867 5 TLIGLLNQVIDQ-----FSSKRALSVSG----KFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 5 ti~~~l~~~a~~-----~p~~~a~~~~~----~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
++.++|.+++++ +|+++|+++.+ .+++||+||.++++++|++|++. |+++||+|+++++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357899999999 99999998732 36899999999999999999998 999999999999999999999999
Q ss_pred HHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-ccccccc
Q 009867 75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAI 153 (523)
Q Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (523)
|+++|++++|+++.++.+++.+++++++++++|+++.....+.......+.......+..........+.+. .......
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH 198 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCC
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcccccc
Confidence 999999999999999999999999999999999998876665544333221111111111000000001000 0001111
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHH--HHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEE
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA--SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 231 (523)
......++++++++|||||||.||+|.++|+ ++. ..... ..+++.++|+++...|++|..++...++.++..|+++
T Consensus 199 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 276 (570)
T 3c5e_A 199 HCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACT 276 (570)
T ss_dssp CCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEE
T ss_pred cccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceE
Confidence 1233467899999999999999999999999 554 33343 6678899999999999999999887788999999999
Q ss_pred EeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccc
Q 009867 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311 (523)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~y 311 (523)
++.....+++..+++.++++++|+++++|+++..+++... ....++++|.++++|+++++++.+.+.+.+|+++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~Y 354 (570)
T 3c5e_A 277 FVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL--SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESY 354 (570)
T ss_dssp EEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT--TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEE
T ss_pred EEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc--cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhcc
Confidence 9876557799999999999999999999999999987632 22347899999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEe-----CCCcccccCCChhhhhhhcc
Q 009867 312 AMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIR-----GPNVTKGYKNNPEANKSAFL 385 (523)
Q Consensus 312 G~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~ 385 (523)
|+||++..++.... .....+++|+| ++++++++|++|++++.|+.|||+++ |++++.||+++++.+.+.|.
T Consensus 355 G~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~ 431 (570)
T 3c5e_A 355 GQTETGLTCMVSKT---MKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR 431 (570)
T ss_dssp EETTTEEEEECCTT---SCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE
T ss_pred chhhcccceecCcc---cccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc
Confidence 99999876554432 23456789999 78999999999999999999999999 99999999999999999999
Q ss_pred CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC--
Q 009867 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN-- 463 (523)
Q Consensus 386 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-- 463 (523)
++||+|||++++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++.++..
T Consensus 432 ~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 511 (570)
T 3c5e_A 432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH 511 (570)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS
T ss_pred CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc
Confidence 999999999999999999999999999999999999999999999999999999999998888888889998876531
Q ss_pred C---CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 464 I---DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 464 ~---~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
. ..++|+++++++|+.|++|..++++++||+|++||++|++|++.+.+.-
T Consensus 512 ~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 512 DPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp CHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence 1 2467999999999999999999999999999999999999999886543
No 14
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.5e-78 Score=627.32 Aligned_cols=507 Identities=24% Similarity=0.356 Sum_probs=424.6
Q ss_pred CHHHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 5 TLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
++.++|+++++++|+++|+++. +.+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 4678899999999999999973 23689999999999999999999999999999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh---------HHHHHHhhcc---cccceeeeecCCccc------cc
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA---------AAQAAASKLN---ISHATATLLDADSEL------TL 141 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~------~~ 141 (523)
++++|+++.++.+++.+++++++++++|+++.... .+........ +...+. +....... ..
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~-~~~~~~~~~~~~~~~~ 235 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIV-LKRTGSDIDWQEGRDL 235 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEE-ECSSCCCCCCCBTTEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEE-EeCCCCcccccCCCce
Confidence 99999999999999999999999999999876431 2222222211 111111 11100000 00
Q ss_pred cccccc-ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH-HHHHHhccCCCceEEEEcChhhHHHHHH
Q 009867 142 SLAHSE-SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLA 219 (523)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 219 (523)
.+.+.. ............++++++++|||||||.||+|+++|.+++.... .....+++.++|++++..|++|..+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~ 315 (652)
T 1pg4_A 236 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSY 315 (652)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred eHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHH
Confidence 011100 00111112234578999999999999999999999999876653 4556788999999999999999999877
Q ss_pred HHHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHH
Q 009867 220 GLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVIL 296 (523)
Q Consensus 220 ~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~ 296 (523)
.++.++..|+++++.+.. ..++..+++.++++++|+++++|++++.|++.... ....+++++|.++++|+++++++.
T Consensus 316 ~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 395 (652)
T 1pg4_A 316 LLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395 (652)
T ss_dssp TTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHH
Confidence 789999999999997642 25889999999999999999999999999887542 222457899999999999999999
Q ss_pred HHHHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC--CCcc
Q 009867 297 SRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG--PNVT 370 (523)
Q Consensus 297 ~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~ 370 (523)
+++.+.+| +++++.||+||+++.++.... .......+++|+| +|++++++|++|++++.|+.|||+++| |+++
T Consensus 396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~ 474 (652)
T 1pg4_A 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA 474 (652)
T ss_dssp HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT-TTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCC
T ss_pred HHHHHHhCCCCCcEEccccCcccccceecCCC-CCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchh
Confidence 99999998 899999999999976665432 2223456889999 799999999999999999999999999 7899
Q ss_pred cccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCC
Q 009867 371 KGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447 (523)
Q Consensus 371 ~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~ 447 (523)
.||+++++.+...+ .+|||+|||+|++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++.
T Consensus 475 ~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~ 554 (652)
T 1pg4_A 475 RTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAI 554 (652)
T ss_dssp CEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred hhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCC
Confidence 99999999887765 378999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCC---HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 448 YGEEINCAIIPREGSNID---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 448 ~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
.++.++++|++.++...+ .++|+++++++|++|++|+.++++++||+|++||++|+.|++.+.+++
T Consensus 555 ~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 555 KGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred CCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 888999999998776544 478999999999999999999999999999999999999999998764
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-78 Score=616.93 Aligned_cols=494 Identities=19% Similarity=0.300 Sum_probs=417.3
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
||+.++|.++|+++|+++|+++.+ +++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v 79 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRD-AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI 79 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCC-ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 689999999999999999999987 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+++.++++++++++++++...... ..... ............. .......+.....++++
T Consensus 80 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--------~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~ 146 (512)
T 3fce_A 80 PVDLSIPADRVQRIAENSGAKLLLSATAVTVT--------DLPVR---IVSEDNLKDIFFT--HKGNTPNPEHAVKGDEN 146 (512)
T ss_dssp EEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--------CCSSE---EEETHHHHHHHHH--TTTCCCCGGGSCCTTSE
T ss_pred eeCCCCcHHHHHHHHHhcCCCEEEecCccccc--------ccccc---eechhhhhhhccc--ccccCCCccccCCCCCe
Confidence 99999999999999999999999987543210 00000 0000000000000 01111112234567899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CChh
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSAS 242 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~~ 242 (523)
++++|||||||.||+|.++|+++.+.+......+++.++|+++..+|++|..++.. ++.++..|+++++.+... .++.
T Consensus 147 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~ 225 (512)
T 3fce_A 147 FYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKDMIARPK 225 (512)
T ss_dssp EEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHHHHHSHH
T ss_pred EEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHHHhhCHH
Confidence 99999999999999999999999999999888999999999999999999998765 889999999999876311 5789
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..++....... ..++++|.++++|+++++++.+++.+.| ++++++.||+||++..++
T Consensus 226 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 304 (512)
T 3fce_A 226 DLFASLEQSDIQVWTSTPSFAEMCLMEASFSE-SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT 304 (512)
T ss_dssp HHHHHHHHHCCCEEEECHHHHHHHTTSTTCST-TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhhccccc-hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhee
Confidence 99999999999999999999999887654433 4578999999999999999999999999 899999999999987766
Q ss_pred cCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc----CCeeeeCce
Q 009867 322 SNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL----FGWFHTGDI 394 (523)
Q Consensus 322 ~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~~~~~TGD~ 394 (523)
....... ......++|+| ++++++++|++|++++.|+.|||+++||+++.||+++++.+++.|. ++||+|||+
T Consensus 305 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl 384 (512)
T 3fce_A 305 GIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDA 384 (512)
T ss_dssp EEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred eEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCce
Confidence 5432111 11244678998 7899999999999999999999999999999999999999999983 459999999
Q ss_pred eeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH----HHHH
Q 009867 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE----EEVL 470 (523)
Q Consensus 395 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~ 470 (523)
|++ ++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++...++.+++++++.++...+. ++++
T Consensus 385 g~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~ 463 (512)
T 3fce_A 385 GYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIK 463 (512)
T ss_dssp EEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHH
T ss_pred EEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHH
Confidence 999 79999999999999999999999999999999999999999999988887888888998876654443 5789
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++++++|+.|++|..++++++||+|++||++|++|++.+.++-.
T Consensus 464 ~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp HHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred HHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999887644
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.7e-77 Score=610.89 Aligned_cols=495 Identities=26% Similarity=0.361 Sum_probs=406.3
Q ss_pred CHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEee
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 84 (523)
++.++|.++++ +|+++|+++.+ .++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDT-GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV 102 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhhc-cCCceEEEeCC-CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence 38889999999 99999999876 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccc-cceeeeecCCccc--ccccccccc-cccccccCCCCC
Q 009867 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNIS-HATATLLDADSEL--TLSLAHSES-DTNAISKLTNDP 160 (523)
Q Consensus 85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 160 (523)
+++.++.+++.+++++++++++|++......+.......... ............. ...+.+... ...........+
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC 182 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCCT
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCCC
Confidence 999999999999999999999999987665554443221110 1111111110000 000000000 111112234567
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHH-HHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNL-AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 239 (523)
+++++++|||||||.||+|.++|+++ ..........+++.++|+++..+|++|..++...++.++..|+++++.+. .+
T Consensus 183 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~ 261 (529)
T 2v7b_A 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE-RP 261 (529)
T ss_dssp TSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS-CC
T ss_pred CCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC-CC
Confidence 89999999999999999999999999 56555555566788999999999999999988778889999999998742 67
Q ss_pred ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 240 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
++..+++.++++++|+++++|+++..+++........ ..++|.+++||+++++++.+.+.+.+|+++++.||+||++.+
T Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 340 (529)
T 2v7b_A 262 TADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHI 340 (529)
T ss_dssp CHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSE
T ss_pred CHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCce
Confidence 8999999999999999999999999998764332211 248999999999999999999999999999999999999766
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
+...... ....+++|+| ++++++++|++|++++.|+.|||+++|++++.||+++++.+...|.++||+|||+++++
T Consensus 341 ~~~~~~~---~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 341 FLSNRAG---AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL 417 (529)
T ss_dssp EEECCTT---CCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred eeccccC---CCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC
Confidence 6554321 2456789999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHh
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID---EEEVLRFCKK 475 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 475 (523)
++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.+.++++..++.... .+++++++++
T Consensus 418 ~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~ 496 (529)
T 2v7b_A 418 PNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKD 496 (529)
T ss_dssp TTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHT
T ss_pred CCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 555567788888887654222 3679999999
Q ss_pred cCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 476 NVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 476 ~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+|+.|++|..++++++||+|++||++|++|++
T Consensus 497 ~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 497 RLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred hcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999999999999999999999999999975
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.6e-77 Score=607.98 Aligned_cols=492 Identities=21% Similarity=0.326 Sum_probs=421.0
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+|+.++|.++|+++|+++|+++.+ +++||+||+++++++|++|++. |.++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 79 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQG-QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPY 79 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEE
Confidence 689999999999999999999877 6999999999999999999985 88899999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|+++.++.+++.+++++++++++|++...... ............ .... .............+++
T Consensus 80 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~ 144 (511)
T 3e7w_A 80 IPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVGQQIQTVSAE--------ELLE-NEGGSVSQDQWVKEHE 144 (511)
T ss_dssp EEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCCCSSCEEEHH--------HHHT-SCSCCCCGGGSCCTTS
T ss_pred EecCCCChHHHHHHHHHhCCCCEEEecccccch------hcccccceecHh--------hhhc-cccCCccccccCCCCC
Confidence 999999999999999999999999986543210 000000000000 0000 0001111222346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~ 241 (523)
+++++|||||||.||+|.++|+++.+.+.+....+++.++++++..+|++|..++.. ++.++..|+++++.+... .++
T Consensus 145 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~ 223 (511)
T 3e7w_A 145 TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKP 223 (511)
T ss_dssp EEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHSH
T ss_pred eEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChhhhcCH
Confidence 999999999999999999999999999999888999999999999999999988765 889999999999876311 478
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|++.++|+++..++....... ..+++++.++++|+++++++.+.+.+.| ++++++.||+||++..+
T Consensus 224 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 302 (511)
T 3e7w_A 224 KVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ-DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAV 302 (511)
T ss_dssp HHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST-TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCS
T ss_pred HHHHHHHHHcCCcEEEecHHHHHHHHhcccccc-ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeee
Confidence 899999999999999999999999987654433 4578999999999999999999999999 89999999999998776
Q ss_pred ccCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--CC--eeeeCc
Q 009867 321 SSNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--FG--WFHTGD 393 (523)
Q Consensus 321 ~~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~TGD 393 (523)
+....... ......++|+| ++++++++|++|++++.|+.|||+|+|++++.||+++++.+++.|. +| ||+|||
T Consensus 303 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGD 382 (511)
T 3e7w_A 303 TSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGD 382 (511)
T ss_dssp EEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEE
T ss_pred eEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCC
Confidence 65432111 12344568999 7999999999999999999999999999999999999999999983 44 799999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH----HHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE----EEV 469 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l 469 (523)
+|++ +||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++...+. +++
T Consensus 383 lg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l 461 (511)
T 3e7w_A 383 AGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAI 461 (511)
T ss_dssp EEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHH
T ss_pred eEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHH
Confidence 9999 59999999999999999999999999999999999999999999988888888999999887654443 678
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+++++++|+.|++|..++++++||+|++||++|++|++.+.+.-.
T Consensus 462 ~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 462 KKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp HHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred HHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 999999999999999999999999999999999999999887543
No 18
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.8e-77 Score=621.34 Aligned_cols=508 Identities=22% Similarity=0.372 Sum_probs=418.1
Q ss_pred CHHHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 5 TLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
++.++|+++++++|+++|+++. +.+++||+||+++++++|+.|+ ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 5778999999999999999973 2268999999999999999999 899999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh---------HHHHHHhhcc-cccceeeeecCCc-cc------cc
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA---------AAQAAASKLN-ISHATATLLDADS-EL------TL 141 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-~~------~~ 141 (523)
|++++|+++.++.+++.+++++++++++|+++.... .+.......+ +...++ +..... .. ..
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~-~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV-YRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE-ECSSCCSSCCCCSSSEE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEE-EecCCCCccccCCCccc
Confidence 999999999999999999999999999999876532 1222221111 111111 111000 00 00
Q ss_pred ccccccc-cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH-HHHHHhccCCCceEEEEcChhhHHHHHH
Q 009867 142 SLAHSES-DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLA 219 (523)
Q Consensus 142 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 219 (523)
.+.+... ...........++++++++|||||||.||+|+++|.++..... .....+++.++|++++..|++|..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 321 (663)
T 1ry2_A 242 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 321 (663)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHH
T ss_pred cHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHH
Confidence 0111000 0111122234578999999999999999999999999876654 4556778999999999999999999877
Q ss_pred HHHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHH
Q 009867 220 GLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVIL 296 (523)
Q Consensus 220 ~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~ 296 (523)
.++.++..|+++++.+.. ..++..+++.++++++|+++++|++++.|++.... ....+++++|.++++|+++++++.
T Consensus 322 ~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 401 (663)
T 1ry2_A 322 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVW 401 (663)
T ss_dssp TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHH
Confidence 788999999999887642 25789999999999999999999999999876542 122457899999999999999999
Q ss_pred HHHHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECC-CCCccCC-CceeEEEEeC--CC
Q 009867 297 SRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDE-IGVPQEG-GAKGEVCIRG--PN 368 (523)
Q Consensus 297 ~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~-~~~~~~~-g~~Gel~v~~--~~ 368 (523)
+++.+.+| +++++.||+||++..++............+++|+| +|++++++|+ +|++++. |+.|||+++| |+
T Consensus 402 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~ 481 (663)
T 1ry2_A 402 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPS 481 (663)
T ss_dssp HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTT
T ss_pred HHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCc
Confidence 99999888 89999999999987766553212234566889999 7999999997 9999998 9999999999 58
Q ss_pred cccccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecC
Q 009867 369 VTKGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445 (523)
Q Consensus 369 ~~~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~ 445 (523)
++.|||++++.+.+.+ .+|||+|||+|++++||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 482 ~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~ 561 (663)
T 1ry2_A 482 FARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFND 561 (663)
T ss_dssp SCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCC
T ss_pred hhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEec
Confidence 9999999999888776 2789999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 446 DKYGEEINCAIIPREGSN---I-D------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 446 ~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+..++.++++|++.++.. . + .++|+++++++|++|++|..|+++++||+|++||++|+.|++++.+++
T Consensus 562 ~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 639 (663)
T 1ry2_A 562 DLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES 639 (663)
T ss_dssp CTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred CCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCC
Confidence 888888999999877643 2 1 478999999999999999999999999999999999999999887763
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.9e-77 Score=617.87 Aligned_cols=502 Identities=25% Similarity=0.398 Sum_probs=425.6
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+++|+.++|.++++ |+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDGE-RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CcCCHHHHHHHhhC--CCCeEEecCC-ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 46799999999987 9999999887 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcccccceeeeecCCcccccccccc-ccccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISK 155 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (523)
++|++|.++.+++.++++++++++++++.... ................. ......... .... .........
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~ 178 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQ-LLNDSGEHN--LQDAINHPAEDFTA 178 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEE-EETCCSTTB--HHHHHHSCCSSCCC
T ss_pred EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceee-ecccccccc--hhhhhcccccccCC
Confidence 99999999999999999999999999987654 22222222211111111 111110000 0000 011111122
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~ 234 (523)
....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+++.. .++.++..|+++++.
T Consensus 179 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 179 TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3446789999999999999999999999999999999989999999999999999999888765 588999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC-CCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~ 313 (523)
+ ..++..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++.+++.+.+++++++.||+
T Consensus 259 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~ 336 (617)
T 3rg2_A 259 A--DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM 336 (617)
T ss_dssp S--SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEE
T ss_pred C--CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEecc
Confidence 7 5688999999999999999999999999987654332 235789999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeee
Q 009867 314 TEATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH 390 (523)
Q Consensus 314 tE~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~ 390 (523)
||++..++.... .......++|+| ++.+++++|+++++++.|+.|||+++|++++.||+++++.+++.| .++||+
T Consensus 337 tE~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yr 414 (617)
T 3rg2_A 337 AEGLVNYTRLDD--SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYC 414 (617)
T ss_dssp TTEEEEECCTTS--CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEE
T ss_pred CcceeecccCCC--cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCcee
Confidence 999865443321 111122467888 467999999999999999999999999999999999999999999 689999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+ ..+.++++
T Consensus 415 TGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~ 492 (617)
T 3rg2_A 415 SGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVR 492 (617)
T ss_dssp EEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHH
T ss_pred cCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887888888888765 46788999
Q ss_pred HHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 471 RFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 471 ~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
+++++ .|+.|++|..++++++||+|++||++|++|++.+.+....
T Consensus 493 ~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 493 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp HHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccccc
Confidence 99998 6999999999999999999999999999999998876554
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-77 Score=612.96 Aligned_cols=482 Identities=21% Similarity=0.336 Sum_probs=407.6
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 116 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCEN-EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 116 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCC-ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.+++++++++++|++......... ........ ..... .. . ............+++
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~-~~~~~---~~--~---~~~~~~~~~~~~~~d 183 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVE-IFEED---TI--K---IREGTNLHVPSKSTD 183 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEE-ECCCS---TT--T---TSCCSCCCCCCCTTS
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCcee-eecch---hh--c---cccCccCCCCCCCCC
Confidence 999999999999999999999999998765432211 11100000 01100 00 0 000111112345789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~ 241 (523)
+++++|||||||.||+|.++|+++.+........+++.++|+++..+|++|..++.. ++.++..|+++++.+... .++
T Consensus 184 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~ 262 (563)
T 1amu_A 184 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDF 262 (563)
T ss_dssp EEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCH
T ss_pred eEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHhhcCH
Confidence 999999999999999999999999988888888889999999999999999888764 788999999999876321 578
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 321 (523)
..+++.++++++|++.++|+++..+... .++++|.+++||+++++++.+.+.+ .+++++.||+||++.+++
T Consensus 263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~ 333 (563)
T 1amu_A 263 VKFEQYINQKEITVITLPPTYVVHLDPE-------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICAT 333 (563)
T ss_dssp HHHHHHHHHTTCCEEEECHHHHTTSCTT-------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSE
T ss_pred HHHHHHHHHcCCcEEEeCHHHHHHHHhc-------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhhe
Confidence 8999999999999999999998776432 2578999999999999999999876 478999999999987766
Q ss_pred cCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccC-------CeeeeCc
Q 009867 322 SNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-------GWFHTGD 393 (523)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~~~~TGD 393 (523)
.............++|+| ++++++++|+++++++.|+.|||+++|++++.||+++++.+++.|.+ +||+|||
T Consensus 334 ~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGD 413 (563)
T 1amu_A 334 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD 413 (563)
T ss_dssp EEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred eeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCC
Confidence 543322223355689999 79999999999999999999999999999999999999999998843 4999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 473 (523)
+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++... ..+.+++++++
T Consensus 414 lg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l 491 (563)
T 1amu_A 414 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFS 491 (563)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHH
T ss_pred EEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888888888753 45788999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++|+.|++|..++++++||+|++||++|++|++...
T Consensus 492 ~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 492 SEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred HhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 9999999999999999999999999999999987543
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-77 Score=617.96 Aligned_cols=479 Identities=16% Similarity=0.234 Sum_probs=400.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~ 104 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDRF-GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY 104 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCC-CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 4689999999999999999999987 599999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++........ ... ... .................+++
T Consensus 105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~--~~~-----------~~~~~~~~~~~~~~~~~~~d 165 (620)
T 4dg8_A 105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLP--CVP-----------VRHLPAAPASVARPCFAADQ 165 (620)
T ss_dssp EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSC--EEE-----------GGGCCCCCCCSSCCCCCTTS
T ss_pred EeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCc--eee-----------eccCCcCCccccCCCCCCCC
Confidence 99999999999999999999999996654321100 000 000 00000111111122345789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|+++.+.+.. ...+++.++++++...|++|..++.. ++.++..|+++++.+...+++.
T Consensus 166 ~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~ 243 (620)
T 4dg8_A 166 IAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGPLDPG 243 (620)
T ss_dssp EEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSSCCHH
T ss_pred eEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCccccCCHH
Confidence 999999999999999999999999876655 45678899999999999999988766 8899999999999766678999
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..+.+... ..++++|.+++||++++++..+++.+.+ ++++++.||+||++.+++
T Consensus 244 ~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 319 (620)
T 4dg8_A 244 VLRQLIGERGADSAWLTASLFNTLVDLDP----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTC 319 (620)
T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHHHHHCG----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred HHHHHHHHhCCcEEEccHHHHHHHHhcCh----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheE
Confidence 99999999999999999999999987532 2468999999999999999888887776 889999999999997766
Q ss_pred cCCCCC-CCCCCCCCcccc-CCcEEEEECCCCCc-cCCCceeEEEEeCCCcccccCCChhhhhhhccC--------Ceee
Q 009867 322 SNPLPE-DGPHKPGSVGRP-VGQEIAILDEIGVP-QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFH 390 (523)
Q Consensus 322 ~~~~~~-~~~~~~~~~g~~-~~~~~~i~d~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~~~ 390 (523)
...... .......++|+| ++++++++|+++.+ ++.|+.|||+++|++++.||+++++.+++.|.+ +||+
T Consensus 320 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yr 399 (620)
T 4dg8_A 320 CHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYR 399 (620)
T ss_dssp EEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEE
T ss_pred EEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEe
Confidence 443222 123345689999 79999999988887 789999999999999999999999999999954 7999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|++.++...+. ++++++... +.++
T Consensus 400 TGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~------~~~~ 472 (620)
T 4dg8_A 400 TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA------DASP 472 (620)
T ss_dssp EEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT------TCCC
T ss_pred CCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh------HHHH
Confidence 999999999999999999999999999999999999999999999999999887764333 444444322 2234
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++++++|+.|++|..++++++||+|++||++|++|++++.+...
T Consensus 473 ~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 473 QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC-
T ss_pred HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccccc
Confidence 56778899999999999999999999999999999988766544
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.6e-78 Score=618.79 Aligned_cols=482 Identities=21% Similarity=0.336 Sum_probs=321.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEA-DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCC-CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 4689999999999999999999887 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++......+ ............ ..............+++
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~d 215 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------TGTTTLYVEDEA--------ASDAPAGNLATGVGPED 215 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------CSSEEEECCC---------------CCCCCCCCCTTS
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------cCCcceeeeccc--------cccccccccCCCCCCCC
Confidence 9999999999999999999999999987643211 000000000000 00011111223456899
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|+++.+.... ...+++.++++++..+|++|..+.. .++.++..|+++++.+...+++.
T Consensus 216 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~~~~~~ 293 (570)
T 4gr5_A 216 VACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCVLQSGQNPDPL 293 (570)
T ss_dssp EEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEEECSSSSCCHH
T ss_pred eEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEEEcCCccCCHH
Confidence 999999999999999999999999766544 3455788999999999998865554 48889999999999876567899
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..+++.... .++++|.+++||++++++..+++.+.+ ++++++.||+||++++.+
T Consensus 294 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 369 (570)
T 4gr5_A 294 EIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT 369 (570)
T ss_dssp HHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhhchh----hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence 999999999999999999999999876432 368999999999999999999999887 889999999999987766
Q ss_pred cCCCCC-CCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-C--------Ceee
Q 009867 322 SNPLPE-DGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-F--------GWFH 390 (523)
Q Consensus 322 ~~~~~~-~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~--------~~~~ 390 (523)
...... +......++|+| ++++++++|+++++++.|+.|||+|+|++++.||+++++.+++.|. + |||+
T Consensus 370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~ 449 (570)
T 4gr5_A 370 HHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449 (570)
T ss_dssp EEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred eeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence 543221 122344568999 7999999999999999999999999999999999999999999883 2 6999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC-CCCCHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG-SNIDEEEV 469 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l 469 (523)
|||+|++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++ ...+.++|
T Consensus 450 TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l 529 (570)
T 4gr5_A 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAEL 529 (570)
T ss_dssp EEEEEEECTTSCEEEEEC--------------------------------------------------------------
T ss_pred CCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999888778888888887654 34567889
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
+++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus 530 ~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 530 RRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------
T ss_pred HHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 999999999999999999999999999999999999763
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.9e-77 Score=607.41 Aligned_cols=496 Identities=20% Similarity=0.272 Sum_probs=406.4
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
|+..|+.++|.++|+++|+++|+.+.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 1 m~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 79 (521)
T 3l8c_A 1 MSLKDMIDSIEQFAQTQADFPVYDCLG-ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH 79 (521)
T ss_dssp -CCCCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHCCCCcceecCC-CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 677899999999999999999999887 6999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCC
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP 160 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
+++|+++.++.+++.+++++++++++|++++..... .......... .. ................+
T Consensus 80 v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~ 144 (521)
T 3l8c_A 80 AYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------EGISLVSLSE-----IE-SAKLAEMPYERTHSVKG 144 (521)
T ss_dssp CEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------TTSEEEEHHH-----HH-HHHHHTCCCCCSSCCCT
T ss_pred EEEecCccccHHHHHHHHHhCCCCEEEecCcccccc---------ccCcccchhh-----hh-hcccccCCcccCCCCCC
Confidence 999999999999999999999999999987643211 0000000000 00 00000111112234567
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH--hccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG- 237 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~- 237 (523)
+++++++|||||||.||+|.++|+++.+...+.... +++.++++++...|++|..++.. ++.++..|+++++.+..
T Consensus 145 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~~ 223 (521)
T 3l8c_A 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKEL 223 (521)
T ss_dssp TSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGGG
T ss_pred CCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHHH
Confidence 899999999999999999999999999887776555 67788999999999988877655 88889999999887642
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA 316 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~ 316 (523)
..++..+++.+.++++|++.++|+++..+........ ..+++++.++++|++++++..+.+.+.+ ++++++.||+||+
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 302 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ-AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST-TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc-ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHH
Confidence 2378899999999999999999999999887654332 4578999999999999999999999998 8999999999999
Q ss_pred ccccccCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc----cCCee
Q 009867 317 THLMSSNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF----LFGWF 389 (523)
Q Consensus 317 ~~~~~~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----~~~~~ 389 (523)
++.++....... ......++|+| ++++++++|++|.+++.|+.|||+|+||+++.||+++++.+++.| .++||
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp SSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence 877665432111 11244578999 799999999999999999999999999999999999999999988 24699
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCC-CCceeEEEEEeCCCCCCC---
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK-YGEEINCAIIPREGSNID--- 465 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~--- 465 (523)
+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++..+.. .++.++++++..++...+
T Consensus 383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999886554 356788889888764321
Q ss_pred ----HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 466 ----EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 466 ----~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
.++++++++++|+.|++|..++++++||+|++||++|++|++++.++..
T Consensus 463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp HHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred chhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 4679999999999999999999999999999999999999999877644
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.3e-77 Score=606.08 Aligned_cols=488 Identities=25% Similarity=0.370 Sum_probs=391.6
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++ +||+|+++++|++++++++|||+++|++++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 76 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQ-ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIA 76 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSS-CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCC-cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence 578899999999999999999877 6999999999999999999986 899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee-ecC----Cccccccc-ccc---cccccccc
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDA----DSELTLSL-AHS---ESDTNAIS 154 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~-~~~---~~~~~~~~ 154 (523)
|+++.++.+++.+++++++++++|++...............+....... ... ........ ... ........
T Consensus 77 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (501)
T 3ipl_A 77 MINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNIL 156 (501)
T ss_dssp ECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHT
T ss_pred ecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCccccc
Confidence 9999999999999999999999999876543221000000000000000 000 00000000 000 01111112
Q ss_pred cCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeC
Q 009867 155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234 (523)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 234 (523)
.....++++++++|||||||.||+|.++|+++.+........+++.+++++++.+|++|.+|+.. ++.++..|+++++.
T Consensus 157 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV 235 (501)
T ss_dssp CCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred ccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence 23456899999999999999999999999999999999889999999999999999999999877 88999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
+ .+++..+++.++++++|+++++|+++..|++...... .++|.+++||+++++++.+.+.+ +++++++.||+|
T Consensus 236 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~T 308 (501)
T 3ipl_A 236 D--KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMT 308 (501)
T ss_dssp S--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC----TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEG
T ss_pred C--CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc----CcccEEEEeCCCCCHHHHHHHHH-hCCCEecccccc
Confidence 7 6799999999999999999999999999988765433 38999999999999999999987 699999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCc
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGD 393 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD 393 (523)
|++..+..... .......+++|+| ++++++++|++ .++.|||+++|++++.||+++++.+.. +.+|||+|||
T Consensus 309 E~~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGD 381 (501)
T 3ipl_A 309 ETCSQFLTATP-EMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGD 381 (501)
T ss_dssp GGTEEEEEECH-HHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEE
T ss_pred ccccceeecCc-cccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCC
Confidence 99876554331 1112355679999 79999999964 567899999999999999999998887 8899999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 473 (523)
+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++.. ...+.+++++++
T Consensus 382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l 459 (501)
T 3ipl_A 382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYL 459 (501)
T ss_dssp EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHH
T ss_pred EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888888888864 346789999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++|+.|++|..++++++||+|++||++|++|++...+.
T Consensus 460 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 460 SKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHSCGGGSCSEEEECSSCC-------------------
T ss_pred HhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 999999999999999999999999999999999887654
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.1e-77 Score=648.27 Aligned_cols=510 Identities=29% Similarity=0.453 Sum_probs=341.1
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.+|+.++|.++++++|+++|+++.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 4799999999999999999999863 378999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC----ccccccccccc----cccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAHSE----SDTNAI 153 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~ 153 (523)
++|++|.++.+++.+++++++++++|++......+.......... .+.+.... ......+.+.. ......
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV--IVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCE--EEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGS
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCce--EEEeCCcccccCCcccccHHHHhhccccccccC
Confidence 999999999999999999999999999988776655544332221 11111110 00011111110 001122
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH----HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCc
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 229 (523)
+.....++++++++|||||||.||+|.++|+++...+..... .+.+.+++++++.+|++|.+++...++.++..|+
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 297 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTC
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCc
Confidence 333457899999999999999999999999999988766543 4467889999999999999999887899999999
Q ss_pred EEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCcee
Q 009867 230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL 308 (523)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~ 308 (523)
++++.+ .+++..+++.++++++|++.++|+++..+++...... .+++++|.+++||+++++++.+++.+.| +++++
T Consensus 298 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~ 374 (979)
T 3tsy_A 298 AILIMP--KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK-YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLG 374 (979)
T ss_dssp EEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGT-SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred EEEEeC--CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccC-CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence 999987 6789999999999999999999999999988765443 4578999999999999999999999998 89999
Q ss_pred ccccccccccccccCCC--CCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc
Q 009867 309 EAYAMTEATHLMSSNPL--PEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384 (523)
Q Consensus 309 ~~yG~tE~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 384 (523)
+.||+||++.+++.+.. ........+++|+| ++.+++++| +++++++.|+.|||+|+|++++.||+++|+.+++.|
T Consensus 375 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f 454 (979)
T 3tsy_A 375 QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETI 454 (979)
T ss_dssp ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhc
Confidence 99999999977654421 12234456789999 799999999 779999999999999999999999999999999999
Q ss_pred -cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC
Q 009867 385 -LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463 (523)
Q Consensus 385 -~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 463 (523)
.+|||+|||+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++..
T Consensus 455 ~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~ 534 (979)
T 3tsy_A 455 DKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE 534 (979)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------------------
T ss_pred cCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999998888888899999887777
Q ss_pred CCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhc
Q 009867 464 IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAK 517 (523)
Q Consensus 464 ~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~ 517 (523)
.+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+.+++.+
T Consensus 535 ~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 588 (979)
T 3tsy_A 535 LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSGM 588 (979)
T ss_dssp ------------------------------------------------------
T ss_pred CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCcc
Confidence 778899999999999999999999999999999999999999999988766443
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.9e-77 Score=601.25 Aligned_cols=473 Identities=31% Similarity=0.466 Sum_probs=390.5
Q ss_pred CCHHHHHHHHHhhcCC-ceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.|+.++|.++++++|+ ++|+++.+ +++||+||.++++++|.+|. .|++|+++++|++++++++|||+++|+++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~-~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGE-RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETT-EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred chhHHHHHHHHHhCCCCCeEEEECC-eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 4677888889999988 99999887 69999999999999998874 38899999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.+++++++++++|++.+.... .. ........... ......+.....+++
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~--~~~~~~~~~~~------------~~~~~~~~~~~~~~d 156 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PA--LGALERVDVDV------------RARGAVPEDGADDGD 156 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GG--GTTSEEEECCT------------TCCCCCCCCCCCTTS
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hh--hcccccccccc------------ccccCCCCCCCCCCC
Confidence 999999999999999999999999998652110 00 00000000000 001111223456789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|.+|+...++.++..|+++++.+ .+++.
T Consensus 157 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~ 234 (505)
T 3nyq_A 157 PALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG--RFSTE 234 (505)
T ss_dssp EEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS--SCCHH
T ss_pred eEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC--CCChH
Confidence 9999999999999999999999999999999999999999999999999999999888999999999999986 67889
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCC--CCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP--EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 320 (523)
.+++.+ ++++|+++++|+++..+++...... ...++++|.+++||+.+++++.+++.+.+++++++.||+||++..+
T Consensus 235 ~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 313 (505)
T 3nyq_A 235 GAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT 313 (505)
T ss_dssp HHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEE
T ss_pred HHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhccccc
Confidence 999999 8899999999999999987543221 1235788999999999999999999999999999999999998766
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCC---CceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCcee
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEG---GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIG 395 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~ 395 (523)
+.... .....+++|+| ++++++++|++|++++. |+.|||+++|++++.||+++++.+++.| .+|||+|||+|
T Consensus 314 ~~~~~---~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~ 390 (505)
T 3nyq_A 314 SVRAD---GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMA 390 (505)
T ss_dssp ECCTT---SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEE
T ss_pred ccCCC---CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeE
Confidence 55432 23456789999 79999999999998876 8999999999999999999999999999 58999999999
Q ss_pred eEcCCCcEEEeccc-ccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHHH
Q 009867 396 YFDSDGYLHLVGRI-KELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE-GSNIDEEEVLRFC 473 (523)
Q Consensus 396 ~~~~~g~~~~~GR~-~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~ 473 (523)
+++++|.+++.||+ |++||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+ +...+.+++++++
T Consensus 391 ~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l 470 (505)
T 3nyq_A 391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHV 470 (505)
T ss_dssp EECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHH
T ss_pred EECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHH
Confidence 99999999999998 589999999999999999999999999999999999988899999999875 4456788999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+++|+.|++|..++++++||+|++||++|++|++
T Consensus 471 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 471 AARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHTCGGGSCSEEEECSCCCC-------------
T ss_pred HhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999999999999999875
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.1e-74 Score=593.44 Aligned_cols=499 Identities=20% Similarity=0.317 Sum_probs=409.0
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECC---cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSG---KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~---~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
+.+|+.++|.++|+++|+++|+++.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 56899999999999999999998642 379999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCC---CHHHHHHHHhhCCceEEEecccchhHHHHHH-hhcc-cccceeeeecCCccccccccccccccccc
Q 009867 79 RATAAPLNAAY---TPDEFEFYLSDSESKLLLTPAEGNAAAQAAA-SKLN-ISHATATLLDADSELTLSLAHSESDTNAI 153 (523)
Q Consensus 79 G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (523)
|++++|++|.+ +.+++.++++.+++++++++.+....+.... .... ..... ....+ .. ........
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~-~~~~~~~~ 159 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP--AIALE------SI-ELNRSSSW 159 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE--EEEGG------GC-CGGGGGGC
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc--eeech------hc-cccccccC
Confidence 99999999988 4578999999999999999876543332111 1100 00000 00000 00 00111112
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
......++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+|+...++.++..|+++++
T Consensus 160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 22345688999999999999999999999999999999999999999999999999999999998878999999999999
Q ss_pred CCCCCC--ChhHHHHHHHhcCccEEeechHHHHHHHhcccC--CCCCCCCCcceEEeccCCCCHHHHHHHHHHhC-----
Q 009867 234 PAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA--KPEPVYPKLRFIRSCSASLAPVILSRLEEAFG----- 304 (523)
Q Consensus 234 ~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~----- 304 (523)
.+...+ ++..+++.++++++|++.++|+++..+.+.... ....+++++|.+++||+++++++.+++.+.|+
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~ 319 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 773222 788999999999999999999999998875322 22345789999999999999999999999883
Q ss_pred -CceeccccccccccccccCCCCC------------------------CCCCCCCCccccCCcEEEEECCC-CCccCCCc
Q 009867 305 -APVLEAYAMTEATHLMSSNPLPE------------------------DGPHKPGSVGRPVGQEIAILDEI-GVPQEGGA 358 (523)
Q Consensus 305 -~~v~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~~~g~~~~~~~~i~d~~-~~~~~~g~ 358 (523)
+++++.||+||++.+++...... .......++|+|... ++++|++ +.+++.|+
T Consensus 320 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-v~i~d~~~~~~~~~g~ 398 (590)
T 3kxw_A 320 KEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE-VKIIDPDTLIPCDFDQ 398 (590)
T ss_dssp GGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE-EEEECTTTCCBCCTTB
T ss_pred ccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC-eEEEcCCCCcCCCCCC
Confidence 46999999999998776543211 011123467877433 8899955 89999999
Q ss_pred eeEEEEeCCCcccccCCChhhhhhhccC-------C--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHH
Q 009867 359 KGEVCIRGPNVTKGYKNNPEANKSAFLF-------G--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429 (523)
Q Consensus 359 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l 429 (523)
.|||+|+||+++.||+++++.+++.|.+ | ||+|||+|+++ +|.+++.||.||+||++|++|+|.+||++|
T Consensus 399 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l 477 (590)
T 3kxw_A 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477 (590)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHH
T ss_pred EEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHH
Confidence 9999999999999999999999999853 5 99999999999 999999999999999999999999999999
Q ss_pred -hcCCCce--eeEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCcC-CCCCc-EEEEe--CCcCCCCCccc
Q 009867 430 -LSHPDIA--QAVAFGVPDDKYGEEINCAIIPREGS--NIDEEEVLRFCKKNVAA-FKVPK-RVFIT--NELPKTASGKI 500 (523)
Q Consensus 430 -~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~-~~~p~-~i~~~--~~lp~t~~GK~ 500 (523)
..++.|. +++|++++++. ++.+.++++..++. ..+.++++++++++++. +++|. .++++ ++||+|++||+
T Consensus 478 ~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi 556 (590)
T 3kxw_A 478 MHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKI 556 (590)
T ss_dssp HHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHH
T ss_pred HhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHH
Confidence 7889998 79999988776 56777888877653 34567899999999885 78875 55555 79999999999
Q ss_pred cHHHHHHHHHHh
Q 009867 501 QRRIVSEHFLAQ 512 (523)
Q Consensus 501 ~r~~l~~~~~~~ 512 (523)
+|++|++++.+.
T Consensus 557 ~R~~L~~~~~~~ 568 (590)
T 3kxw_A 557 RRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999999999864
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.3e-73 Score=588.00 Aligned_cols=503 Identities=23% Similarity=0.311 Sum_probs=416.0
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC--cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG--KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
..|+.++|.++++++|+.+++.... ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGL 99 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 4589999999999999998886433 27899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCC-------HHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccccccccccccccccc
Q 009867 81 TAAPLNAAYT-------PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAI 153 (523)
Q Consensus 81 ~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (523)
+++|+++.++ .+++.++++.+++++++++.+....+............. .. ..... ......
T Consensus 100 ~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~-~~~~~~ 168 (576)
T 3gqw_A 100 VAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL----SH------AWFKA-LPEADV 168 (576)
T ss_dssp EEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEE----EH------HHHHT-SCCCCC
T ss_pred eEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceec----ch------hhhhc-cccccc
Confidence 9999999998 899999999999999999988766555443322211100 00 00000 001111
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH-hccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEE
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV-YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT 232 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 232 (523)
......++++++++|||||||.||+|.++|+++...+...... +++.++|+++..+|++|.+|+...++.++..|++++
T Consensus 169 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~ 248 (576)
T 3gqw_A 169 ALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVD 248 (576)
T ss_dssp CCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEE
T ss_pred ccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEE
Confidence 1223457899999999999999999999999999888776554 789999999999999999999887888999999988
Q ss_pred eCCCCC--CChhHHHHHHHhcCccEEeechHHHHHHHhcccCC--CCCCCCCcceEEeccCCCCHHHHHHHHHHh-----
Q 009867 233 LPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK--PEPVYPKLRFIRSCSASLAPVILSRLEEAF----- 303 (523)
Q Consensus 233 ~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~----- 303 (523)
+..... +++..+++.++++++|+++++|+++..+.+..... ...+++++|.+++||+++++++.+++.+.|
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 328 (576)
T 3gqw_A 249 YLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNF 328 (576)
T ss_dssp ECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred EcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCC
Confidence 866322 47889999999999999999999998886653321 224578999999999999999999999988
Q ss_pred -CCceeccccccccccccccCCCCCCCC---------------C----------CCCCcccc-CCcEEEEECCCCCccCC
Q 009867 304 -GAPVLEAYAMTEATHLMSSNPLPEDGP---------------H----------KPGSVGRP-VGQEIAILDEIGVPQEG 356 (523)
Q Consensus 304 -~~~v~~~yG~tE~~~~~~~~~~~~~~~---------------~----------~~~~~g~~-~~~~~~i~d~~~~~~~~ 356 (523)
++++++.||+||++.+++......... . ...++|+| ++++++++|++|++++.
T Consensus 329 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~ 408 (576)
T 3gqw_A 329 DNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAE 408 (576)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCT
T ss_pred CcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCC
Confidence 678999999999998877654211100 0 01268999 78999999999999999
Q ss_pred CceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCce
Q 009867 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA 436 (523)
Q Consensus 357 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~ 436 (523)
|+.|||+++|++++.||+++++.+...+.+|||+|||+|++ +||.+++.||.||+||++|++|+|.+||++|.++|+|.
T Consensus 409 g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 487 (576)
T 3gqw_A 409 RVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIH 487 (576)
T ss_dssp TBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCC
T ss_pred CCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccc
Confidence 99999999999999999999999988889999999999999 79999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC-cCCCCCcEEEEeC--CcCCCCCccccHHHHHHHHHHhh
Q 009867 437 QAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNV-AAFKVPKRVFITN--ELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 437 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~i~~~~--~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
++++++...+. +.+.+.++.........+++++++++++ +.+++|..+.+++ +||+|++||++|++|+++|.+.+
T Consensus 488 ~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 565 (576)
T 3gqw_A 488 SGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAY 565 (576)
T ss_dssp TTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHH
T ss_pred cccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHh
Confidence 98888776654 3345555554444334567889999888 6899999998887 89999999999999999999988
Q ss_pred hhhcCC
Q 009867 514 SAAKVP 519 (523)
Q Consensus 514 ~~~~~~ 519 (523)
...+..
T Consensus 566 ~~~~~~ 571 (576)
T 3gqw_A 566 AASLNV 571 (576)
T ss_dssp TCC---
T ss_pred hhccch
Confidence 766543
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2e-74 Score=592.66 Aligned_cols=493 Identities=17% Similarity=0.240 Sum_probs=311.2
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCc---------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGK---------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF 72 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~---------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 72 (523)
+.+|+.++|.++|+++|+++|+++.++ +++||+||.++++++|+.|.+.|+ +||+|+++++|++++++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~ 96 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII 96 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence 568999999999999999999986431 689999999999999999999999 7999999999999999999
Q ss_pred HHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccc
Q 009867 73 LAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNA 152 (523)
Q Consensus 73 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (523)
|||+++|++++|+++.++.+++.+++++++++++|+++...... ............. ...... .......
T Consensus 97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~--~~~~~~~ 166 (562)
T 3ite_A 97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-------ELPPETKVLDTKN-QSFIEN--LSTQDTS 166 (562)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-------CCCTTCEEEETTC-HHHHHH--HHHSCCS
T ss_pred HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-------ccCccceeecccc-hhhhhh--ccccccc
Confidence 99999999999999999999999999999999999986643211 0000000000000 000000 0000111
Q ss_pred cccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH--------hccCCCceEEEEcChhhHHHHHHHHHHh
Q 009867 153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--------YKLTESDSTVIVLPLFHVHGMLAGLLSS 224 (523)
Q Consensus 153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 224 (523)
.......++++++++|||||||.||+|.++|+++.+....+... +.+...+++++..|+.|..++.. ++.+
T Consensus 167 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (562)
T 3ite_A 167 DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLA 245 (562)
T ss_dssp CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHH
T ss_pred ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHH
Confidence 11223456889999999999999999999999998877665443 34778889999999888777654 7788
Q ss_pred hhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhC
Q 009867 225 FAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304 (523)
Q Consensus 225 l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~ 304 (523)
+..|+++++... ...+..+++.++++++|+++++|++++.+.... ..++++|.+++||+++++++.+.+.+.++
T Consensus 246 l~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~~~~ 319 (562)
T 3ite_A 246 WRFGLCAVTGER-LSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP-----EDAPHLVYLGVGGEKMTPRTQQIWSSSDR 319 (562)
T ss_dssp HHTTCEEEECCH-HHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG-----GGSTTCCEEEEESSCCCHHHHHHHTTCSS
T ss_pred HhcccEEEecch-hhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc-----cccCceEEEEEecCCCCHHHHHHHhhCCC
Confidence 999999988662 123567889999999999999999988774332 24689999999999999999999998889
Q ss_pred CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 305 ~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
+++++.||+||++..++...... .....++|+| ++.+++++| +.+.+++.|+.|||+|+|++++.||+++++.+..
T Consensus 320 ~~~~~~YG~TE~~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~ 397 (562)
T 3ite_A 320 VALVNVYGPTEVTIGCSAGRILP--DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGF 397 (562)
T ss_dssp CEEEEEECCGGGCSCSEEEECCT--TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSE
T ss_pred cEEEEeeccchheeeeeeeeecC--CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccc
Confidence 99999999999987766554322 2345678999 789999999 5688899999999999999999999999998887
Q ss_pred hccCC--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcC-CCceeeEEEeecCCCCCceeEEEEEeC
Q 009867 383 AFLFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH-PDIAQAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 383 ~~~~~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
.+.+| ||+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..+++++..
T Consensus 398 ~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 477 (562)
T 3ite_A 398 CDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVAS 477 (562)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------
T ss_pred ccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEec
Confidence 77777 999999999999999999999999999999999999999999998 778888888888887777666666654
Q ss_pred CCCCCC-------------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCC-CCccccHHHHHHHHHHhhh
Q 009867 460 EGSNID-------------EEEVLRFCKKNVAAFKVPKRVFITNELPKT-ASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 460 ~~~~~~-------------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t-~~GK~~r~~l~~~~~~~~~ 514 (523)
.+.... .++|+++++++|+.|++|+.++++++||+| ++||++|++|++++.+...
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~~ 546 (562)
T 3ite_A 478 SGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLSL 546 (562)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccCH
Confidence 443222 248999999999999999999999999998 8999999999999986543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-72 Score=627.85 Aligned_cols=486 Identities=24% Similarity=0.352 Sum_probs=412.1
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..++.++|.++++++|+++|+++.+ +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~ 541 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYSG-QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY 541 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECC-eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++........ ......... ..+.. . . . ......+.....+++
T Consensus 542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~-~~~~~-~-~--~----~~~~~~~~~~~~~~~ 608 (1304)
T 2vsq_A 542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTL-FIDDQ-T-R--F----EEQASDPATAIDPND 608 (1304)
T ss_dssp EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEE-ESSCG-G-G--G----GSCSSCCCCCCCTTS
T ss_pred EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEE-Eeccc-c-c--c----ccccCCCCCCCCCCC
Confidence 99999999999999999999999999876442211 011011111 11100 0 0 0 001111223456789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-CCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-~~~~ 241 (523)
+++++|||||||.||||+++|+++.+. ......+++.++++++...|+.+..+.. .++.++..|+++++.+.. ..++
T Consensus 609 ~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~~~~~~~~~~ 686 (1304)
T 2vsq_A 609 PAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLIIADEHTLLDT 686 (1304)
T ss_dssp EEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCGGGTTCH
T ss_pred eEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEECChhhcCCH
Confidence 999999999999999999999999865 4445566788999999999988776654 488999999999997743 3588
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+.+.+.++++|+++++|++++.+.+... ..++++|.+++|||.++++..+.+.+.+ +++++|.||+||++.++
T Consensus 687 ~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 687 ERLTDLILQENVNVMFATTALFNLLTDAGE----DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762 (1304)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHHHHHHHCS----HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred HHHHHHHHHcCCcEEEccHHHHHHHHhhch----hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence 999999999999999999999999976521 2357899999999999999999998888 47899999999999877
Q ss_pred ccCCCCCC-CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-------CCeeee
Q 009867 321 SSNPLPED-GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHT 391 (523)
Q Consensus 321 ~~~~~~~~-~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~~~~~T 391 (523)
+....... ......++|+| ++++++|+|+++++++.|+.|||+|+|+++++||+++|+.|++.|. ++||+|
T Consensus 763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrT 842 (1304)
T 2vsq_A 763 TAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT 842 (1304)
T ss_dssp EEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEE
T ss_pred eeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEec
Confidence 65433221 22344679999 7899999999999999999999999999999999999999999983 249999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+|++++||.++++||+|++||++|++|.|.|||.+|.++|+|.+++|++.++...+..++++++... ..+.+++++
T Consensus 843 GDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~ 920 (1304)
T 2vsq_A 843 GDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKA 920 (1304)
T ss_dssp EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHH
T ss_pred CCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888877888888888754 467899999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++++||.|++|..++++++||+|++||++|++|.+...
T Consensus 921 ~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 921 HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp HHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred HHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 999999999999999999999999999999998865443
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.4e-60 Score=476.55 Aligned_cols=396 Identities=22% Similarity=0.319 Sum_probs=316.0
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECC------c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSG------K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF 72 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~------~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 72 (523)
|+.+|+.++|.++|+++|+++|+++.+ + +++||+||.++++++|++|+++|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 577899999999999999999998754 1 689999999999999999999995 9999999999999999999
Q ss_pred HHHHHhcCEEeeCCC---CCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhccccc-ceeeeecCCcccccccccccc
Q 009867 73 LAVIRARATAAPLNA---AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH-ATATLLDADSELTLSLAHSES 148 (523)
Q Consensus 73 la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (523)
|||+++|++++|+++ .++.+++.+++++++++++|++......+........... ......+. .. ..
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~ 170 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL--------LD-LD 170 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG--------SC-TT
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc--------cc-cc
Confidence 999999999999999 7889999999999999999999887665544322211100 00000000 00 01
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCC------CceEEEEcChhhHHHHHHHHH
Q 009867 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE------SDSTVIVLPLFHVHGMLAGLL 222 (523)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~~~~~~ 222 (523)
...........++++++++|||||||.||+|+++|+++.+.+......+.+.+ ++++++.+|++|.+|+...++
T Consensus 171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 250 (480)
T 3t5a_A 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGIC 250 (480)
T ss_dssp CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTH
T ss_pred cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHH
Confidence 11112223456789999999999999999999999999999988888888877 999999999999999888899
Q ss_pred HhhhcCcEEEeCCCCC--CChhHHHHHHHhcCccEEeechHHHHHHHhccc---CCCCCCCCCcceEEeccCCCCHHHHH
Q 009867 223 SSFAAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV---AKPEPVYPKLRFIRSCSASLAPVILS 297 (523)
Q Consensus 223 ~~l~~g~~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~---~~~~~~~~~l~~i~~~g~~~~~~~~~ 297 (523)
.++..|+++++.+... .++..+++.++++++| +..+|+++..++.... .....+++++|.+++||+++++++.+
T Consensus 251 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~ 329 (480)
T 3t5a_A 251 APILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIK 329 (480)
T ss_dssp HHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHH
T ss_pred HHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHH
Confidence 9999999999976322 2789999999999999 8899999888876421 12234578999999999999999999
Q ss_pred HHHHHhC------CceeccccccccccccccCCCCCCC----------------------CCCCCCccccCCcEEEEECC
Q 009867 298 RLEEAFG------APVLEAYAMTEATHLMSSNPLPEDG----------------------PHKPGSVGRPVGQEIAILDE 349 (523)
Q Consensus 298 ~~~~~~~------~~v~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~g~~~~~~~~i~d~ 349 (523)
++.+.|+ +.+++.||+||++.+++........ .....++|+|...+++|+|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd~ 409 (480)
T 3t5a_A 330 RFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDS 409 (480)
T ss_dssp HHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEET
T ss_pred HHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEcC
Confidence 9999984 4699999999999877765432110 12334789994499999995
Q ss_pred C-CCccCCCceeEEEEeCCCcccccCCChhhhhhhc------------cCCeeeeCceeeEcCCCcEEEecc
Q 009867 350 I-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF------------LFGWFHTGDIGYFDSDGYLHLVGR 408 (523)
Q Consensus 350 ~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~~~~~TGD~~~~~~~g~~~~~GR 408 (523)
+ |++++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|+++ ||.++|.||
T Consensus 410 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 410 DTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 5 7999999999999999999999999999999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.1e-53 Score=410.95 Aligned_cols=317 Identities=20% Similarity=0.283 Sum_probs=264.8
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 239 (523)
.+++++|+|||||||.||+|+++|+++.+.+......++++++|++++.+|++|.+|+.. ++.++..|+++++... ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~-~~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEP-TA 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECC-CS
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCc-cc
Confidence 378899999999999999999999999999999999999999999999999999999876 7778888888887653 22
Q ss_pred ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 240 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
..++.++++++|++.++|+++..+++..... ..++++|.+++||+++++++.+++.+ +++++++.||+||++..
T Consensus 114 ---~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~--~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~ 187 (358)
T 4gs5_A 114 ---NPLAGLDHADFDFVAMVPMQLQSILENSATS--GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSH 187 (358)
T ss_dssp ---CTTTTCSSCCCSEEEECHHHHHHHHHCTTTG--GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSE
T ss_pred ---cHHHHHHHhCCeEEEcChHHHHHhhcccccc--ccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccce
Confidence 2356788999999999999999998875433 35789999999999999999999875 58999999999999887
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
++..... ....+.+|.+ +++.+.+.+ .||++++|+.. .+|||+|||++++|
T Consensus 188 ~~~~~~~---~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~~---------------~~g~~~TGDlg~~d 239 (358)
T 4gs5_A 188 VALKALN---GPEASELYVFLPGIQYGVDE----------RGCLHISGAVT---------------NGQTVQTNDLVEIH 239 (358)
T ss_dssp EEEEECS---STTCCSCEEECTTCEEEECT----------TSEEEEESGGG---------------TTCCEEEEEEEEEC
T ss_pred eeccccc---ccccceeeccCCCeEEEecC----------cCceEEecccc---------------cCcceecCCccccc
Confidence 7765432 2344567777 677666543 48999988532 35799999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHh---cCCCceeeEEE-eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLL---SHPDIAQAVAF-GVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 474 (523)
++| ++++||.||+||++|++|+|.+||++|. ++|+|.+++|+ +.+++..++.++++++...+ ....++|+++++
T Consensus 240 ~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~ 317 (358)
T 4gs5_A 240 GNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIR 317 (358)
T ss_dssp SSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHH
T ss_pred cCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHH
Confidence 988 6778999999999999999999998774 57999988776 56777777888777775443 345678999999
Q ss_pred hcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 475 KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 475 ~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++|+.|++|+.++++++||+|++||++|++|++++.+..+
T Consensus 318 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~ 357 (358)
T 4gs5_A 318 SRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSN 357 (358)
T ss_dssp HHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC----
T ss_pred hhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcC
Confidence 9999999999999999999999999999999999877544
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.2e-50 Score=398.85 Aligned_cols=325 Identities=16% Similarity=0.164 Sum_probs=270.8
Q ss_pred CCC-CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDP-SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..+ +++++++|||||||.||+|.++|+++......+. ..+++.++|+++..+|+.|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 8899999999999999999999999987766553 345889999999999988777777778889999999998
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCC-CCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
.+ ..++..+++.++++++|+++++|+++..|++....... ..++++|.+++||+++++++.+.+.+.||+++++.||
T Consensus 162 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG 239 (436)
T 3qov_A 162 AA--AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFG 239 (436)
T ss_dssp CC--SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCc
Confidence 76 55889999999999999999999999999887544332 2368999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeee
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFH 390 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 390 (523)
+||+++.+...... .....+.| ++..++++| ++|++++.|+.|||+|+|. +...+.++||+
T Consensus 240 ~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~ 302 (436)
T 3qov_A 240 MTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMMPLIRYR 302 (436)
T ss_dssp EGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSSCCCSEE
T ss_pred chhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCceEEEEE
Confidence 99995442222111 11224555 588999999 8999999999999999983 33445678999
Q ss_pred eCceeeEcCCC------c---EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 391 TGDIGYFDSDG------Y---LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 391 TGD~~~~~~~g------~---~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
|||+++++++| . +++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++. +
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~ 381 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-D 381 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-T
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-C
Confidence 99999999998 5 699999999999999999999999999999999999999988877788899999988 5
Q ss_pred CCCC----HHHHHHHHHhcCcCC-CCCcEEEEeC--CcCCCCCccccHH
Q 009867 462 SNID----EEEVLRFCKKNVAAF-KVPKRVFITN--ELPKTASGKIQRR 503 (523)
Q Consensus 462 ~~~~----~~~l~~~~~~~l~~~-~~p~~i~~~~--~lp~t~~GK~~r~ 503 (523)
...+ .++++++++++|+.+ ++|..+.+++ +||+|+ ||++|.
T Consensus 382 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 382 LSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 5444 578999999999998 8999999998 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.2e-48 Score=389.21 Aligned_cols=326 Identities=15% Similarity=0.158 Sum_probs=269.0
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcChh-hHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLF-HVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~-~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..++++++++|||||||.||+|.++|+++........ ..+++.++|+++..+|+. |..++. ..+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEEE
Confidence 4568899999999999999999999999877655433 367889999999999984 554444 47888999999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCC-CCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
.+ ..++..+++.++++++|+++++|+++..|++........ .++++|.+++||+++++++.+.+.+.||+++++.||
T Consensus 168 ~~--~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG 245 (443)
T 2y4o_A 168 MS--GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYG 245 (443)
T ss_dssp CC--SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccC
Confidence 76 458999999999999999999999999998765433211 247899999999999999999999999999999999
Q ss_pred cccccc--ccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCe
Q 009867 313 MTEATH--LMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388 (523)
Q Consensus 313 ~tE~~~--~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 388 (523)
+||+++ ++..+.. .....+.+ ++..++++| ++|++++.|+.|||+++|. +++.+.++|
T Consensus 246 ~TE~~g~~~~~~~~~------~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~p~~~ 307 (443)
T 2y4o_A 246 LSEVMGPGVACECVE------TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAMPVIR 307 (443)
T ss_dssp ETTTTEEEEEEECTT------TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSSCCSS
T ss_pred chhhcCCeEEeccCC------CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccChhhe
Confidence 999743 3332221 11123444 578999999 6799999999999999982 334456789
Q ss_pred eeeCceeeEcCC-CcE-----EEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCC--
Q 009867 389 FHTGDIGYFDSD-GYL-----HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE-- 460 (523)
Q Consensus 389 ~~TGD~~~~~~~-g~~-----~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-- 460 (523)
|+|||+++++++ |.+ ++.||.+|+||++|++|+|.+||++|.++|+|.++++++++++..++.+.++|+..+
T Consensus 308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~ 387 (443)
T 2y4o_A 308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387 (443)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcc
Confidence 999999999999 986 899999999999999999999999999999999999888877666777888888865
Q ss_pred C---CCCCHHHHHHHHHhcCcCC-CCCcEEEEe--CCcCCCCCccccHHH
Q 009867 461 G---SNIDEEEVLRFCKKNVAAF-KVPKRVFIT--NELPKTASGKIQRRI 504 (523)
Q Consensus 461 ~---~~~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lp~t~~GK~~r~~ 504 (523)
+ ...+.++++++++++|+.+ .+|..+.++ ++||+|++||++|..
T Consensus 388 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 388 AASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 2 2234578999999999887 489888888 599999999999964
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.9e-48 Score=385.72 Aligned_cols=325 Identities=15% Similarity=0.153 Sum_probs=268.9
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcCh-hhHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..++++++++|||||||.||+|.++|+++......+. ..+++.++|+++..+|+ +|..++.. .+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEe
Confidence 3568899999999999999999999999877665433 35788999999999998 56655544 7888999999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCC-CCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
.+ ..++..+++.++++++|+++++|+++..|++........ ..+++|.+++||+++++++.+.+.+.||+++++.||
T Consensus 166 ~~--~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG 243 (437)
T 2y27_A 166 FG--GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYG 243 (437)
T ss_dssp CC--SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCC
Confidence 76 458999999999999999999999999998765432211 247899999999999999999999999999999999
Q ss_pred ccccccc-cccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCee
Q 009867 313 MTEATHL-MSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389 (523)
Q Consensus 313 ~tE~~~~-~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (523)
+||+++. +.... .. .....+.+ ++..++++| ++|++++.|+.|||+++| .+.+.+.++||
T Consensus 244 ~TE~~g~~~~~~~-~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~------------~t~~~~~~~~y 306 (437)
T 2y27_A 244 LSEVMGPGVASEC-VE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS------------LTKEALPIIRY 306 (437)
T ss_dssp ETTTTEEEEEECC-TT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCSSSCCCSE
T ss_pred chhhcCCeeEEec-CC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec------------CCcCCchhhee
Confidence 9998432 33221 11 11124444 578999999 569999999999999998 23344567899
Q ss_pred eeCceeeEcC-CCcE-----EEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC
Q 009867 390 HTGDIGYFDS-DGYL-----HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463 (523)
Q Consensus 390 ~TGD~~~~~~-~g~~-----~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 463 (523)
+|||++++++ +|.+ ++.||.+|+||.+|++|+|.+||++|.++|+|.++++++++++..++.+.++|++.++..
T Consensus 307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~ 386 (437)
T 2y27_A 307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA 386 (437)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT
T ss_pred ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc
Confidence 9999999999 6985 899999999999999999999999999999999998888877766788888888876543
Q ss_pred ---CCHHHHHHHHHhcCcCC-CCCcEEEEe--CCcCCCCCccccHH
Q 009867 464 ---IDEEEVLRFCKKNVAAF-KVPKRVFIT--NELPKTASGKIQRR 503 (523)
Q Consensus 464 ---~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lp~t~~GK~~r~ 503 (523)
.+.++++++++++|+.+ .+|..+.++ ++||+|+ ||++|.
T Consensus 387 ~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~ 431 (437)
T 2y27_A 387 PDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRV 431 (437)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCE
T ss_pred chhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEE
Confidence 23477999999999988 599888888 5999999 999986
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.6e-30 Score=252.04 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=175.9
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHH---HHHhccCCCceEEEEcCh-hhHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI---KSVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..++++++++|||||||.||+|.++|+++.....++ ....++.++|++++.+|+ +|..++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 467899999999999999999999999999888754 355577899999999999 89888877 555588888 555
Q ss_pred CCCCCCChh-----------------------HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCC
Q 009867 234 PAAGRFSAS-----------------------TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290 (523)
Q Consensus 234 ~~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~ 290 (523)
+. .+++. .+++.++++++|++.++|+++..|++..... ...++++|.+++||++
T Consensus 166 ~~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 166 SI--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-LQMKQSLAQITLGGTE 242 (369)
T ss_dssp CC--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-HHHHHHCSEEEEESSC
T ss_pred Cc--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-ccccCCeeEEEECCcc
Confidence 44 34555 7777999999999999999999998764321 1235789999999999
Q ss_pred CCHHHHHHHH-HHh-CCceeccccccccccccccCCCCCCCCCCCCCcccc-------CCcEEEEECC-CCCccCCCcee
Q 009867 291 LAPVILSRLE-EAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-------VGQEIAILDE-IGVPQEGGAKG 360 (523)
Q Consensus 291 ~~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~i~d~-~~~~~~~g~~G 360 (523)
+++++++++. +.| ++++++.||+||+++++..+... ++|+| ++++++++|+ +|++++.|+.|
T Consensus 243 l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~--------~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G 314 (369)
T 3hgu_A 243 LNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT--------SESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314 (369)
T ss_dssp CCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC--------TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred CCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc--------cCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence 9999999999 899 89999999999998776544311 35655 4789999996 99999999999
Q ss_pred EEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCC--C-------cEEEecccccceecCCc
Q 009867 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSD--G-------YLHLVGRIKELINRGGE 418 (523)
Q Consensus 361 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~~~i~~~G~ 418 (523)
||+|++. +...+ ..+|+|||+++..+. | .+..++|.++..++.|.
T Consensus 315 El~vt~l------------~~~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHL------------SPWAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEE------------ETTEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEc------------Ccccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999973 22222 235999999988643 2 24567777777777664
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.51 E-value=2.2e-14 Score=111.21 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=73.2
Q ss_pred cccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC----CHHHHHHHHHhcCc-CCC
Q 009867 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI----DEEEVLRFCKKNVA-AFK 481 (523)
Q Consensus 407 GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~l~-~~~ 481 (523)
||.+|+|+++|.+++|.+||++|.++|+|.++++++.+++..++.+.+++++ ++... +.+++.+.+++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888777777777888888888 55322 23556666666654 345
Q ss_pred CCcEEEEeC--CcCCCCCccccHH
Q 009867 482 VPKRVFITN--ELPKTASGKIQRR 503 (523)
Q Consensus 482 ~p~~i~~~~--~lp~t~~GK~~r~ 503 (523)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 555788887 89999 9999883
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.50 E-value=4.6e-14 Score=109.65 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=73.9
Q ss_pred cccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcC-CCC
Q 009867 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAA-FKV 482 (523)
Q Consensus 407 GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~-~~~ 482 (523)
.|.||+|+++|.+++|.+||++|.++|+|.++++++.+++..++.+.++++..++...+. +++.+.+++++.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888888999998887765553 3455555555543 235
Q ss_pred CcEEEEe--CCcCCCCCccccH
Q 009867 483 PKRVFIT--NELPKTASGKIQR 502 (523)
Q Consensus 483 p~~i~~~--~~lp~t~~GK~~r 502 (523)
|..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 5566666 489998 799987
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.09 E-value=1e-09 Score=109.06 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=98.9
Q ss_pred chHHHHHHHhcccCCC-----CCCCCCcc---eEEeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCC
Q 009867 259 VPTIHQIVLDRHVAKP-----EPVYPKLR---FIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPED 328 (523)
Q Consensus 259 ~P~~~~~l~~~~~~~~-----~~~~~~l~---~i~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~ 328 (523)
.|..++.+.+...... ...+++++ .+..||- .+ -.+.++..+ +.+++ ..|++||+....-..+.
T Consensus 277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~--~~-Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~--- 350 (609)
T 4b2g_A 277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM--AQ-YIPTLDYYSGGLPLACTMYASSECYFGLNLNPM--- 350 (609)
T ss_dssp CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGG--GG-GHHHHHHHHTSCCEECCEEECSSCEEEECSCTT---
T ss_pred CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCCh--HH-HHHHHHHHcCCCccccCcccccceeeeeecCCC---
Confidence 4556666655433221 13478855 4444552 22 224444444 67766 89999996422222111
Q ss_pred CCCCCCCcccc--C-CcEEEEEC--CC--------------CCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCee
Q 009867 329 GPHKPGSVGRP--V-GQEIAILD--EI--------------GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389 (523)
Q Consensus 329 ~~~~~~~~g~~--~-~~~~~i~d--~~--------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (523)
..++..+.. + ....+.++ +. ...+..|+.+||+++.. .|.|+ |
T Consensus 351 --~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Y 412 (609)
T 4b2g_A 351 --SKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------Y 412 (609)
T ss_dssp --SCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------E
T ss_pred --CCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------e
Confidence 011112221 2 23445553 21 12467899999999874 35555 9
Q ss_pred eeCceeeEcC----CCcEEEecccccceecCCcccChHHHHHHHhc------CCC--ceeeEEEee
Q 009867 390 HTGDIGYFDS----DGYLHLVGRIKELINRGGEKISPIEVDAVLLS------HPD--IAQAVAFGV 443 (523)
Q Consensus 390 ~TGD~~~~~~----~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~------~~~--v~~~~v~~~ 443 (523)
++||++++.. ...+.|.||.++++++.|+++.+.+||+++.+ ..+ |.++.+...
T Consensus 413 r~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d 478 (609)
T 4b2g_A 413 RVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD 478 (609)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred ecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence 9999999873 46799999999999999999999999998863 233 567777643
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.06 E-value=1.6e-09 Score=107.58 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCCC---cceEEeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCCCCCCCCCcccc---CCcEEEEEC
Q 009867 277 VYPK---LRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRP---VGQEIAILD 348 (523)
Q Consensus 277 ~~~~---l~~i~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~i~d 348 (523)
.+++ +..+..||- ..-.+.++..+ +.+++ ..|++||+....-..+. ..++..+.. .....+.++
T Consensus 295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~-----~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPL-----CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTT-----SCGGGCCEEECTTSSEEEEEE
T ss_pred hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCC-----CCcccCceeecCCcEEEEEEe
Confidence 4788 544555663 22223344444 67777 89999996322212111 011112221 123455554
Q ss_pred --CC--C-----CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC----CCcEEEecccccceec
Q 009867 349 --EI--G-----VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS----DGYLHLVGRIKELINR 415 (523)
Q Consensus 349 --~~--~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~~~i~~ 415 (523)
+. . ..+..|+.+||++|+. .|.|+ |++||++++.. ...+.|.||.++++.+
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~ 430 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI 430 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe
Confidence 21 1 2356899999999984 24444 99999999875 4579999999999999
Q ss_pred CCcccChHHHHHHHhcCC--------CceeeEEEee
Q 009867 416 GGEKISPIEVDAVLLSHP--------DIAQAVAFGV 443 (523)
Q Consensus 416 ~G~~v~~~~ie~~l~~~~--------~v~~~~v~~~ 443 (523)
.|+++...+||+++.+.. .|.++.+...
T Consensus 431 ~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~ 466 (581)
T 4eql_A 431 DSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYAD 466 (581)
T ss_dssp SSCCEEHHHHHHHHHHC--------------CEEEE
T ss_pred eeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecC
Confidence 999999999999997542 2566666543
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=99.04 E-value=2.8e-09 Score=105.46 Aligned_cols=177 Identities=14% Similarity=0.173 Sum_probs=103.7
Q ss_pred chHHHHHHHhcccCC------CCCCCCCcceE--EeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCC
Q 009867 259 VPTIHQIVLDRHVAK------PEPVYPKLRFI--RSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPED 328 (523)
Q Consensus 259 ~P~~~~~l~~~~~~~------~~~~~~~l~~i--~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~ 328 (523)
.|..++.+.+..... ....|++++.+ +.+| .+.+. .+.++..+ +.+++ ..|++||+....-..+.
T Consensus 276 ~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G-~~~~Y-~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~--- 350 (581)
T 4epl_A 276 NPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTG-SMEPY-VPKLRHYAGDLPLVSHDYGSSEGWIAANVTPR--- 350 (581)
T ss_dssp CHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSG-GGGGG-HHHHHHHHTTSCEEECCEEETTEEEEECCCTT---
T ss_pred CHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCC-ChHHH-HHHHHHHcCCCccccCceeccceeeeeecCCC---
Confidence 345555555443222 12347888643 3344 22222 24444444 67777 89999996422222211
Q ss_pred CCCCCCCcccc--C-CcEEEEEC--CCC---------CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCce
Q 009867 329 GPHKPGSVGRP--V-GQEIAILD--EIG---------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDI 394 (523)
Q Consensus 329 ~~~~~~~~g~~--~-~~~~~i~d--~~~---------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~ 394 (523)
..++..+.. + ....+.+. +.+ ..+..|+.+||++++.. |.|+ |++||+
T Consensus 351 --~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~ 412 (581)
T 4epl_A 351 --LSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDV 412 (581)
T ss_dssp --SCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEE
T ss_pred --CCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCE
Confidence 111112221 2 22344442 211 24678999999999742 4444 999999
Q ss_pred eeEcCC----CcEEEecccccceecCCcccChHHHHHHHhcC--------CCceeeEEEeecCCCCCceeEEEEEeC
Q 009867 395 GYFDSD----GYLHLVGRIKELINRGGEKISPIEVDAVLLSH--------PDIAQAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 395 ~~~~~~----g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
+++... ..+.|.||.++++.+.|++++..+||+++.+. -.|.++.+........+ .-++++.+.
T Consensus 413 v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 413 VKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp EEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred EEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 998642 56899999999999999999999999988642 24678877664332222 233445553
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.07 E-value=0.77 Score=44.46 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|.+.+...+..++..+...|+.++|++...++- ....+...++++..|+.+++++.. +.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEE
Confidence 467999998888888888878899999999999885 355556678889999999977664 78899999999999999
Q ss_pred EecccchhHHHH
Q 009867 107 LTPAEGNAAAQA 118 (523)
Q Consensus 107 i~~~~~~~~~~~ 118 (523)
+..+.....+..
T Consensus 187 ~~~Ps~~~~l~~ 198 (437)
T 2y27_A 187 MVTPSYMLSIAD 198 (437)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988776654443
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.14 E-value=1 Score=43.65 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|.+.+...+..++..+...|+.++|++...++- ....+...++++..|+.+++++.. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 467999998888888888888899999999999885 355566778889999999887765 78889999999999999
Q ss_pred EecccchhHHHH
Q 009867 107 LTPAEGNAAAQA 118 (523)
Q Consensus 107 i~~~~~~~~~~~ 118 (523)
...+.....+..
T Consensus 189 ~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 189 LVTPSYMLNLID 200 (443)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 987776554433
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.07 E-value=1.1 Score=43.34 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=73.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|.+.+...+..++..+...++.++|++....+- ....+...++++..|+.+++.++. +.+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 567999999888888888888899999999999874 455566778899999999887654 77889999999999999
Q ss_pred EecccchhHHHH
Q 009867 107 LTPAEGNAAAQA 118 (523)
Q Consensus 107 i~~~~~~~~~~~ 118 (523)
+..+.....+..
T Consensus 183 ~~~P~~~~~l~~ 194 (436)
T 3qov_A 183 HAIPSYAIRLAE 194 (436)
T ss_dssp ECCHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988776655443
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=84.35 E-value=8.9 Score=37.61 Aligned_cols=96 Identities=6% Similarity=-0.014 Sum_probs=71.0
Q ss_pred cCCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-HHHHHHHHHHHHhcCEEeeCCC
Q 009867 17 FSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNA 87 (523)
Q Consensus 17 ~p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~-~~~~~~~la~~~~G~~~v~l~~ 87 (523)
.|+.+|++... +..+|.+.+...+..+.. ..++.++|++...+|-. .-.+..+++++..|+.++..+.
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 45777776422 156788888776655443 35889999999988854 4444557888899999888764
Q ss_pred CCCHHHHHHHHhhCCceEEEecccchhHH
Q 009867 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAA 116 (523)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 116 (523)
.+.+.+...+++.++.++...+.....+
T Consensus 238 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l 265 (501)
T 3ipl_A 238 -FNAEQILTMIKNERITHISLVPQTLNWL 265 (501)
T ss_dssp -CCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCcEEEchHHHHHHH
Confidence 6899999999999999999876655433
No 46
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=80.32 E-value=7.6 Score=38.70 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=72.5
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
+.++++.+..+.++ ..+|.+.+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+.
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~- 107 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND- 107 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEECCT-
T ss_pred CCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc--cHHHHHHHHHHcCCEEeecCC-
Confidence 34454444444333 36888888766655543 447899999999988543 345558899999998887664
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHh
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 268 (523)
....+.+...++..++..++..+..+..+..
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 6688899999999999999998876665543
No 47
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=80.31 E-value=22 Score=35.31 Aligned_cols=104 Identities=7% Similarity=-0.002 Sum_probs=72.6
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
++.++++....+..+ -..-.+|...+...+..+.. ..++.++|++...++-.. .++..+++.+..|+..+..+.
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI--DYVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCCEEEccCC
Confidence 566676544221111 11246788888766665543 447889999999988543 345558899999998887765
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHH
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 267 (523)
....+.+...+++.+++.++..+.....+.
T Consensus 110 -~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 110 -MYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp -TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred -CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 668888999999999999998877665543
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.52 E-value=5.1 Score=37.51 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=61.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHH--------------
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPD-------------- 92 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~-------------- 92 (523)
..+|.+.+...+..++..+...|+.++|++...+|- ..-.+...++++..|+.+++.+ .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 566888888887777667777799999999999885 3344455566688999655543 3444
Q ss_pred ---------HHHHHHhhCCceEEEecccchh
Q 009867 93 ---------EFEFYLSDSESKLLLTPAEGNA 114 (523)
Q Consensus 93 ---------~l~~~l~~~~~~~ii~~~~~~~ 114 (523)
.+...+++.++.+++..+....
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~ 217 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLR 217 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHH
Confidence 6666888999999988765443
No 49
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.81 E-value=18 Score=35.52 Aligned_cols=85 Identities=18% Similarity=0.073 Sum_probs=66.1
Q ss_pred eeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccE
Q 009867 179 VPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW 255 (523)
Q Consensus 179 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~ 255 (523)
..+|.+++...+..+... .++.++|++...++-.. .++..+++.+..|+..+..+. ....+.+...+++.++..
T Consensus 30 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~-~~~~~~l~~~l~~~~~~~ 106 (509)
T 3ivr_A 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS--EMIELIGAVALIGAILLPVNY-RLNADEIAFVLGDGAPSV 106 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHCEEE
T ss_pred cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEEecCC-CCCHHHHHHHHHhcCceE
Confidence 468998887776655444 47889999999988543 345568899999998888765 668888999999999999
Q ss_pred EeechHHHHHH
Q 009867 256 YTAVPTIHQIV 266 (523)
Q Consensus 256 l~~~P~~~~~l 266 (523)
++..+.....+
T Consensus 107 vi~~~~~~~~~ 117 (509)
T 3ivr_A 107 VVAGTDYRDIV 117 (509)
T ss_dssp EEECSTTHHHH
T ss_pred EEECcchhhhH
Confidence 99988766553
No 50
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=76.96 E-value=15 Score=36.37 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.++.++++. +.+| -.+|...+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP--EFVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCEEeccC
Confidence 456666543 2223 35788888766665543 347899999999988543 34556889999999888766
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHH
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 266 (523)
. ....+.+...++..++..++..+.....+
T Consensus 106 ~-~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 106 P-FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp T-TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred C-CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 5 66888899999999999999887655444
No 51
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=74.79 E-value=22 Score=35.14 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=69.5
Q ss_pred cCCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHH-HHHHHHHhcCEEeeC
Q 009867 17 FSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE--FVI-MFLAVIRARATAAPL 85 (523)
Q Consensus 17 ~p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~--~~~-~~la~~~~G~~~v~l 85 (523)
.|+.+|++... +..+|.+.+...+..... ..++.++|++...+|-+.. +.. .+++++..|+.++..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 35666766321 156788888776655443 3478999999998885533 333 478889999998876
Q ss_pred CCCCCHHHHHHHHhhCCceEEEecccchhHHH
Q 009867 86 NAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ 117 (523)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 117 (523)
+ ..+.+.+...+++.++.++...+.....+.
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 287 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWM 287 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHH
Confidence 5 468889999999999999998776554443
No 52
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.44 E-value=19 Score=35.66 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=69.7
Q ss_pred cCCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HH-HHHHHHHhcCEEeeC
Q 009867 17 FSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF--VI-MFLAVIRARATAAPL 85 (523)
Q Consensus 17 ~p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~--~~-~~la~~~~G~~~v~l 85 (523)
.|+.+|++... +..+|.+.+...+...+.. .++.++|++...+|-+..+ .. .+++.+..|+.++..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 35667776422 1567998888776655443 4889999999998754333 32 478888899998876
Q ss_pred CCCCCHHHHHHHHhhCCceEEEecccchhHHH
Q 009867 86 NAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ 117 (523)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 117 (523)
+. .+...+...+++.+++++...+.....+.
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 54 57888889999999999998776554443
No 53
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=74.14 E-value=11 Score=37.66 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=67.5
Q ss_pred CceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhcCEEeeCCCC
Q 009867 19 SKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF--VIMFLAVIRARATAAPLNAA 88 (523)
Q Consensus 19 ~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~--~~~~la~~~~G~~~v~l~~~ 88 (523)
+.+|++... +..+|.+.+...+......+...++.++|++...+|-...+ ...+++++ .|+.++..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 677776432 15689998877665554433335788999999888754332 33456777 999988775 4
Q ss_pred CCHHHHHHHHhhCCceEEEecccchh
Q 009867 89 YTPDEFEFYLSDSESKLLLTPAEGNA 114 (523)
Q Consensus 89 ~~~~~l~~~l~~~~~~~ii~~~~~~~ 114 (523)
.+.+.+...+++.++.+++..+....
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~ 295 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFA 295 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHH
Confidence 68899999999999999998766543
No 54
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=73.42 E-value=20 Score=35.56 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=65.7
Q ss_pred eeechHHHHHHHHHHH---HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccE
Q 009867 179 VPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW 255 (523)
Q Consensus 179 v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~ 255 (523)
..+|...+...+..+. ...++.++|++...++-.. .++..+++++..|+..+..+. ....+.+...+++.++..
T Consensus 46 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~-~~~~~~l~~~l~~~~~~~ 122 (541)
T 1v25_A 46 HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF--RHLEAYFAVPGMGAVLHTANP-RLSPKEIAYILNHAEDKV 122 (541)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHTCSE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEEecCc-ccCHHHHHHHHHhCCCcE
Confidence 4678888876665544 3447889999999988543 345558899999998887765 667888999999999999
Q ss_pred EeechHHHHHHH
Q 009867 256 YTAVPTIHQIVL 267 (523)
Q Consensus 256 l~~~P~~~~~l~ 267 (523)
++..+.....+.
T Consensus 123 vi~~~~~~~~~~ 134 (541)
T 1v25_A 123 LLFDPNLLPLVE 134 (541)
T ss_dssp EEECGGGHHHHH
T ss_pred EEEChhHHHHHH
Confidence 999887665543
No 55
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=72.39 E-value=28 Score=34.82 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.++.++++.... .| ....+|...+......+. ...++.++|++...++-.. .++..+++++..|+..+..+
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~--e~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY--DFWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT--HHHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCEEEEeCC
Confidence 467777765432 12 234678888876665544 3447899999999988543 34556889999999888766
Q ss_pred CCCCChhHHHHHHHhcCccEEeechH
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPT 261 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~ 261 (523)
. .+....+...+++.++..+++.+.
T Consensus 143 ~-~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 143 H-MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp T-TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred c-cCCHHHHHHHHHhcCCCEEEEecc
Confidence 4 668889999999999999887553
No 56
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=72.09 E-value=38 Score=33.73 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=64.2
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|.+.+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+. ....+.+...+++.++..+
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~-~~~~~~l~~il~~~~~~~l 140 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI--DLFIGILAVLKAGGAYVPIDI-EYPKERIQYILDDSQARML 140 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHTCSEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEEeCC-CCcHHHHHHHHHhcCCCEE
Confidence 5788888766655543 347889999999988543 445558899999998887765 5678888999999999999
Q ss_pred eechHHHHHH
Q 009867 257 TAVPTIHQIV 266 (523)
Q Consensus 257 ~~~P~~~~~l 266 (523)
+..+.....+
T Consensus 141 i~~~~~~~~~ 150 (563)
T 1amu_A 141 LTQKHLVHLI 150 (563)
T ss_dssp EECGGGHHHH
T ss_pred EEcCchhhhh
Confidence 9888665543
No 57
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=72.05 E-value=39 Score=32.64 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=74.2
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh---ccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.++.++++.........-....+|..++...+..+...+ +. ++|++...++-.. .++..+++++..|+..+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~ 113 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL--EYVVAFLGALQAGRIAVPLS 113 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH--HHHHHHHHHHHhCcEEEeeC
Confidence 356677665442111111235789999887777665555 44 7899998887543 44556889999999888765
Q ss_pred CC--CCChhHHHHHHHhcCccEEeechHHHHHHHhc
Q 009867 236 AG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269 (523)
Q Consensus 236 ~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 269 (523)
.. ....+.+...+++.++..++..+.....+...
T Consensus 114 ~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 114 VPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp SCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 31 23567888889999999999998887776554
No 58
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=70.59 E-value=25 Score=32.62 Aligned_cols=79 Identities=6% Similarity=0.010 Sum_probs=55.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-HHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL 107 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~-~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 107 (523)
..+|.+.+...+..++. ..+++++|++...+|-+ .-.+..++..+..|+..+..++... ....+++.++..+.
T Consensus 55 V~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEE
Confidence 57899988876655443 35899999999988854 4445556677788888877766433 24467788888887
Q ss_pred ecccch
Q 009867 108 TPAEGN 113 (523)
Q Consensus 108 ~~~~~~ 113 (523)
..+...
T Consensus 129 ~~P~~l 134 (358)
T 4gs5_A 129 MVPMQL 134 (358)
T ss_dssp ECHHHH
T ss_pred cChHHH
Confidence 765543
No 59
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=70.48 E-value=21 Score=35.26 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=63.4
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|..++...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+. ....+.+...+++.++..+
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTV--ALPVAFLGALYAGVVPVVANT-LLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSST--HHHHHHHHHHHHTCEEEECCT-TCCHHHHHHHHHHHTCSEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHcCceEEecCc-ccCHHHHHHHHhccCCeEE
Confidence 5788888776665543 447889999999988543 345558889999998887664 5678888899999999999
Q ss_pred eechHHHHHH
Q 009867 257 TAVPTIHQIV 266 (523)
Q Consensus 257 ~~~P~~~~~l 266 (523)
+..+.....+
T Consensus 125 i~~~~~~~~~ 134 (529)
T 2v7b_A 125 IASGALVQNV 134 (529)
T ss_dssp EEEGGGHHHH
T ss_pred EechhhhhHH
Confidence 8877665443
No 60
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.20 E-value=30 Score=33.84 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=62.6
Q ss_pred eeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccE
Q 009867 179 VPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW 255 (523)
Q Consensus 179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~ 255 (523)
..+|...+...+..+.. ..++.++|++...++-.. .++..+++.+..|+..+..+. ....+.+...+++.+++.
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~ 104 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA--DVVIAILALHRLGAVPALLNP-RLKSAELAELIKRGEMTA 104 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEECT-TSCHHHHHHHHHHTTCSE
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEecCC-ccChHHHHHHHhhcCCcE
Confidence 46888888776665544 347889999999988543 345558899999998887654 567888889999999999
Q ss_pred Eee--chHHHHHH
Q 009867 256 YTA--VPTIHQIV 266 (523)
Q Consensus 256 l~~--~P~~~~~l 266 (523)
++. .+.....+
T Consensus 105 ~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 105 AVIAVGRQVADAI 117 (504)
T ss_dssp EEECC--CHHHHH
T ss_pred EEEecchhhhhhh
Confidence 888 66555544
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=69.66 E-value=21 Score=35.72 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=72.1
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh----ccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY----KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 234 (523)
.++.++++.... .| ....+|...+...+..+...+ ++.++|++...++-.. .++..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP--EWWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEec
Confidence 456677654321 12 134688888877666554433 7889999999988543 3455588999999988876
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHH
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 267 (523)
+. ....+.+...+++.++..++..+.....+.
T Consensus 130 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 130 TI-QMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CT-TCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CC-CCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 64 567888889999999999998777655543
No 62
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=68.29 E-value=31 Score=33.91 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=69.6
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.++.++++.. + ....+|...+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~ 99 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV--EFCCLFYGAAKLGAVAVPIN 99 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEECC
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCH--HHHHHHHHHHHhCcEEEecC
Confidence 3566665542 1 1246888888776665544 347889999999988543 34555889999999888776
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHH
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQI 265 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 265 (523)
. ....+.+...+++.++..++..+.....
T Consensus 100 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (517)
T 3r44_A 100 T-RLAAPEVSFILSDSGSKVVIYGAPSAPV 128 (517)
T ss_dssp T-TSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred c-ccCHHHHHHHHHhcCceEEEECCchHHH
Confidence 5 5678888889999999999887655443
No 63
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=68.18 E-value=39 Score=34.10 Aligned_cols=96 Identities=9% Similarity=-0.076 Sum_probs=69.0
Q ss_pred CCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHH-HHHHHHHhcCEEeeCC
Q 009867 18 SSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT--VEFVI-MFLAVIRARATAAPLN 86 (523)
Q Consensus 18 p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~--~~~~~-~~la~~~~G~~~v~l~ 86 (523)
|+.+|++... +..+|.+.+...+...... .++.++|++...+|-+ ..... .+++++..|+.++..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 4667776321 2567888887766555443 4789999999998844 44333 4788889999988765
Q ss_pred CCCCHHHHHHHHhhCCceEEEecccchhHHH
Q 009867 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ 117 (523)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 117 (523)
. .+...+...+++.+++++...+.....+.
T Consensus 260 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 289 (617)
T 3rg2_A 260 D-PSATLCFPLIEKHQVNVTALVPPAVSLWL 289 (617)
T ss_dssp S-CCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEcchHHHHHHH
Confidence 4 57888888999999999998776554443
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=65.55 E-value=30 Score=33.79 Aligned_cols=80 Identities=11% Similarity=0.053 Sum_probs=61.9
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|..++...+..+.. ..++.++|++...++-.. .++..+++.+..|+..+..+. ....+.+...+++.++..+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~-~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV--EALVLYLATVRAGGVYLPLNT-AYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEECCT-TCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEecCC-CCCHHHHHHHHHhcCCcEE
Confidence 5788888776665543 347889999999988543 345558899999998887765 6678888899999999999
Q ss_pred eechHH
Q 009867 257 TAVPTI 262 (523)
Q Consensus 257 ~~~P~~ 262 (523)
+..+..
T Consensus 105 i~~~~~ 110 (503)
T 4fuq_A 105 VCDPSK 110 (503)
T ss_dssp EECGGG
T ss_pred EECchh
Confidence 887654
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=64.99 E-value=54 Score=32.59 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=61.5
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|.+.+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+. ....+.+...+++.++..+
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~~ 176 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGF--DMVVALLAVLKAGGGYTMLDP-QFPVERLALSLEDTGAPLL 176 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHTCSEE
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHHCCEEEEcCC-CChHHHHHHHHHhcCCCEE
Confidence 5888888776665543 447889999999988543 345568899999998887765 6678889999999999998
Q ss_pred eechHH
Q 009867 257 TAVPTI 262 (523)
Q Consensus 257 ~~~P~~ 262 (523)
+.....
T Consensus 177 i~~~~~ 182 (570)
T 4gr5_A 177 VTSRPL 182 (570)
T ss_dssp EECTTT
T ss_pred Eecchh
Confidence 877644
No 66
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=62.92 E-value=15 Score=36.11 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=67.3
Q ss_pred cCCceeEEEC-C-------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhcCEEeeCCC
Q 009867 17 FSSKRALSVS-G-------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV-EFVIMFLAVIRARATAAPLNA 87 (523)
Q Consensus 17 ~p~~~a~~~~-~-------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~-~~~~~~la~~~~G~~~v~l~~ 87 (523)
.|+.+|++.. . +..+|.+.+...+.... ...++.++|++...+|-+. -.+..+++++..|+.++.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 3566666532 1 15678888876655443 3358899999999988543 234557888999999988876
Q ss_pred C--CCHHHHHHHHhhCCceEEEecccch
Q 009867 88 A--YTPDEFEFYLSDSESKLLLTPAEGN 113 (523)
Q Consensus 88 ~--~~~~~l~~~l~~~~~~~ii~~~~~~ 113 (523)
. .+.+.+...+++.+++++...+...
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 246 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFA 246 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHH
Confidence 3 4678888999999999988776543
No 67
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=61.92 E-value=75 Score=31.62 Aligned_cols=102 Identities=8% Similarity=0.012 Sum_probs=70.3
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.++.++++... +. ..-.+|.+.+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+
T Consensus 24 ~p~~~a~~~~~-~~----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 24 SPNKKSCTFLN-KE----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGL--PLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp CTTSEEEEEEE-TT----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEEEc-CC----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHHhCcEEEEec
Confidence 35666765543 11 2346888888776665543 447889999999988543 34555889999999888765
Q ss_pred CCCC--ChhHHHHHHHhcCccEEeechHHHHHHH
Q 009867 236 AGRF--SASTFWQDMIKYNATWYTAVPTIHQIVL 267 (523)
Q Consensus 236 ~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 267 (523)
.... ....+...+...++..++..+.....+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 4221 3456777888889999999888776653
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=61.45 E-value=30 Score=31.75 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=50.6
Q ss_pred HHHHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 45 SRLVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 45 ~~L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
....+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3344555 488998655556678888888999999998887766655566677889999999999764
No 69
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=60.04 E-value=27 Score=34.22 Aligned_cols=94 Identities=7% Similarity=0.056 Sum_probs=67.3
Q ss_pred cCCceeEEEC-C-------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhcCEEeeCCC
Q 009867 17 FSSKRALSVS-G-------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV-EFVIMFLAVIRARATAAPLNA 87 (523)
Q Consensus 17 ~p~~~a~~~~-~-------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~-~~~~~~la~~~~G~~~v~l~~ 87 (523)
.++.+|++.. . +..+|.+.+...+..++ ...++.++|++...+|-+. -.+..+++++..|+.++.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 3556666532 1 15678888877655443 3358899999999988543 334557888999999888765
Q ss_pred C--CCHHHHHHHHhhCCceEEEecccch
Q 009867 88 A--YTPDEFEFYLSDSESKLLLTPAEGN 113 (523)
Q Consensus 88 ~--~~~~~l~~~l~~~~~~~ii~~~~~~ 113 (523)
. .+.+.+...+++.++.++...+...
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 245 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFV 245 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHH
Confidence 3 4678888999999999998776544
No 70
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=59.93 E-value=47 Score=33.90 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH----HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 234 (523)
.++.++++.. +..+|. ...+|...+...+..+.. ..++.++|++...+|... .++..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~-~~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~--e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP--EAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEE-CSSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEE-cCCCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCEEEee
Confidence 4667776643 222222 346888888766655433 457889999999998543 3455588999999988876
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechH
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPT 261 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~ 261 (523)
.. .+..+.+...+++.++..++..+.
T Consensus 170 ~~-~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FA-GFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CT-TSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CC-CCCHHHHHHHHHhcCCeEEEEccc
Confidence 65 678889999999999999887654
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=57.54 E-value=40 Score=34.29 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
++.++++.. +..+|. ...+|...+...+..+. ...++.++|++...+|... .++..+++++..|+..+....
T Consensus 90 pd~~Al~~~-~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~--e~vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 90 GDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP--EAAVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp TTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEEE-cCCCCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHcCcEEEecCC
Confidence 566676543 222222 34688888876665544 3457899999999998643 335558899999998877665
Q ss_pred CCCChhHHHHHHHhcCccEEeech
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVP 260 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P 260 (523)
.+..+.+...+++.++..++...
T Consensus 165 -~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 -GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp -TSCHHHHHHHHHHHTCSEEEEES
T ss_pred -CCCHHHHHHHHHhcCCCEEEEcC
Confidence 67888999999999998888754
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=57.01 E-value=25 Score=37.88 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=70.2
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.++.++++. +.+| ..+|...+......+.. ..++.++|++...++-. ..++..+++.+..|+..+..+
T Consensus 74 ~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns--~e~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 74 FATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATAAN 144 (979)
T ss_dssp TTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSC--HHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCC--HHHHHHHHHHHHcCCEEEeeC
Confidence 467777653 2223 36788888766655543 44788999999998854 344556889999999888766
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHH
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQ 264 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~ 264 (523)
. ....+.+...+++.++..++..+.+..
T Consensus 145 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~ 172 (979)
T 3tsy_A 145 P-FFTPAEIAKQAKASNTKLIITEARYVD 172 (979)
T ss_dssp T-TSCHHHHHHHHHHHTEEEEEECSTTTT
T ss_pred C-CCCHHHHHHHHHHcCCeEEEEChHHHH
Confidence 4 668888999999999999998776543
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=53.13 E-value=68 Score=31.77 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=62.9
Q ss_pred eeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC-------hhHHHHHH
Q 009867 179 VPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS-------ASTFWQDM 248 (523)
Q Consensus 179 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~-------~~~~~~~i 248 (523)
-.+|.+.+...+..+... .++.++|++...++-.. .++..+++++..|+..+..+. .+. ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~-~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS--EFVEAFFACQYAGLVAVPLAI-PMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEECC-CSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCeEeecCC-CCcccchhhHHHHHHHHH
Confidence 467888887776655443 47889999999988543 445568899999998887653 233 56777888
Q ss_pred HhcCccEEeechHHHHHHH
Q 009867 249 IKYNATWYTAVPTIHQIVL 267 (523)
Q Consensus 249 ~~~~~t~l~~~P~~~~~l~ 267 (523)
+..++..++........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 8899999998877655543
No 74
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=52.59 E-value=73 Score=31.04 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=66.2
Q ss_pred cCCceeEEEC-C-------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-HH-HHHHHHHHHHhcCEEeeCC
Q 009867 17 FSSKRALSVS-G-------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VE-FVIMFLAVIRARATAAPLN 86 (523)
Q Consensus 17 ~p~~~a~~~~-~-------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~-~~-~~~~~la~~~~G~~~v~l~ 86 (523)
.|+.+|++.. . +..+|.+.+...+..++..+ ++.++|++...+|-. .. ++..+++.+..|+.++..+
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 3566676532 1 15679998888776655544 788999998888753 32 3345788999999988775
Q ss_pred CCCCHHHHHHHHhhCCceEEEecccchhHH
Q 009867 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAA 116 (523)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 116 (523)
..+.+.+...+ +.++.+++..+.....+
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l 257 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRI 257 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence 46777777777 67888888776655443
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=50.36 E-value=45 Score=32.69 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=58.6
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|...+...+..+.. ..++.+++++...++-.. .++..+++++..|+..+..+. ....+.+...++..++..+
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~vpl~~-~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY--DMLATFVALTKSGHAYIPVDV-HSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSH--HHHHHHHHHHHTTCCEEEEET-TSCHHHHHHHHHHSCCSEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEecCc-cccHHHHHHHHHhCCCCEE
Confidence 4788888776665544 447889999988887543 445558889999988776554 5678889999999999988
Q ss_pred eech
Q 009867 257 TAVP 260 (523)
Q Consensus 257 ~~~P 260 (523)
+...
T Consensus 106 i~~~ 109 (521)
T 3l8c_A 106 IAIE 109 (521)
T ss_dssp EESS
T ss_pred EecC
Confidence 8754
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=48.96 E-value=58 Score=29.95 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=52.9
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.| +++|.+..+....+-.-..+.++|.+.|..+..+-|...+......++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 34444 688876667777788889999999999999988878777777788899999999998754
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=46.64 E-value=1.6e+02 Score=28.89 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=64.8
Q ss_pred CCCCeEEEEEeeCCCCCCc--ceeechHHHHHHHHHHHHHh---ccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 159 DPSDVALFLHTSGTTSRPK--GVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK--~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
.++.++++.. .+..+..+ .-.+|.+.+...+..+...+ +. ++|++...++-.. .++..+++++..|+..+.
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~--~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL--IAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH--HHHHHHHHHHHTTCEEEE
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEe
Confidence 3566665543 33333322 24678888877666554433 56 6999999888543 345558899999998887
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeech
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVP 260 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P 260 (523)
.+. ....+.+...+++.++..++...
T Consensus 109 l~~-~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 109 IEA-GLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CCT-TSCHHHHHHHHHHHTCSEEEECT
T ss_pred cCC-cCHHHHHHHHHHhcCCCEEEEcc
Confidence 664 66788888889998988877653
No 78
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=43.43 E-value=98 Score=31.15 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=58.3
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|...+...+..+.. ..++.+++++...++-.. .++..+++.+..|+..+..+. ....+.+...+++.++..+
T Consensus 52 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~--~~vva~lailkaGa~~vpld~-~~p~~~l~~il~~~~~~~v 128 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSR--ESITCLLAILLSGHHYLYIDL-KQPAAWNAELCRQVDCRLI 128 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHTEEEE
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEeeCc-cChHHHHHHHHHhCCCcEE
Confidence 5788888766665543 347889999999988543 345568899999998888764 5577788888888898888
Q ss_pred eech
Q 009867 257 TAVP 260 (523)
Q Consensus 257 ~~~P 260 (523)
+...
T Consensus 129 l~~~ 132 (620)
T 4dg8_A 129 LDCS 132 (620)
T ss_dssp EECC
T ss_pred EecC
Confidence 7443
No 79
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=38.73 E-value=1.2e+02 Score=27.50 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=46.3
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.| ++||....+....+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 567753334455677778888889999998887666544556667888899999998754
No 80
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=38.28 E-value=1.3e+02 Score=26.94 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=46.0
Q ss_pred HHHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 46 RLVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 46 ~L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
.+.+.| +++|+.|+. ...+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 57 ~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 57 AAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344555 467776655 55566677777888899998877666544455666778999999998863
No 81
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=36.58 E-value=1.2e+02 Score=28.79 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=48.2
Q ss_pred HHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 009867 48 VAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA 110 (523)
Q Consensus 48 ~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 110 (523)
.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+......++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4566 47785555555668888888889999999888776665566677788999999999974
No 82
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=36.53 E-value=2e+02 Score=24.86 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=9.7
Q ss_pred EEEEEeeCCCCCCcce
Q 009867 164 ALFLHTSGTTSRPKGV 179 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v 179 (523)
.++.-..|+||..+..
T Consensus 168 iY~Vs~~GvTG~~~~~ 183 (252)
T 3tha_A 168 IYLLASIGITGTKSVE 183 (252)
T ss_dssp EEEECCSCSSSCSHHH
T ss_pred EEEEecCCCCCcccCC
Confidence 3444445999987543
No 83
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.44 E-value=1.9e+02 Score=24.26 Aligned_cols=92 Identities=9% Similarity=-0.032 Sum_probs=53.0
Q ss_pred ceEEEEcCh--hhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEee--c----hHH--HHHHHhcccC
Q 009867 203 DSTVIVLPL--FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA--V----PTI--HQIVLDRHVA 272 (523)
Q Consensus 203 ~~~~~~~p~--~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~--~----P~~--~~~l~~~~~~ 272 (523)
.+++..++. .|..|....-...-..|..++.... ...++.+.+.+.+++++.+.. + +++ +..+.+....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~-~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~ 171 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV-DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS-SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC-CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence 455554443 5666655433333445666555432 668999999999999997766 2 222 3333333332
Q ss_pred CCCCCCCCcceEEeccCCCCHHHHHH
Q 009867 273 KPEPVYPKLRFIRSCSASLAPVILSR 298 (523)
Q Consensus 273 ~~~~~~~~l~~i~~~g~~~~~~~~~~ 298 (523)
... ...+ .+++||..++++..+.
T Consensus 172 ~~~--~~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 172 EKL--RDSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp TTC--GGGS-EEEEESSSCCHHHHHH
T ss_pred cCC--CCCC-EEEEECCCCCHHHHHH
Confidence 220 0123 3788999999765443
No 84
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=36.27 E-value=1.3e+02 Score=27.45 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=45.6
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.| +++|+.|+.... +-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 477776666654 66667777888889998877666544556667788899999998764
No 85
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=34.99 E-value=1.4e+02 Score=26.76 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=44.6
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.| +++|+.|+. ...+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34455 467776655 55556666777888889998877655444455566778999999998864
No 86
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=33.33 E-value=1.7e+02 Score=26.56 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 30 DLTYSRIHELVERA--A-SRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 30 ~~Ty~el~~~~~~~--A-~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
.+++.+........ | ..+...++++|++|+|+..-+.-.++++++....|+.++.++.+ ++. ..+....++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 46776643332222 2 23444589999999999987777777777777777777666443 333 456677788877
Q ss_pred Eecc
Q 009867 107 LTPA 110 (523)
Q Consensus 107 i~~~ 110 (523)
+...
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7543
No 87
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=32.91 E-value=2.1e+02 Score=25.44 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.| +++|+.|+... .+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34455 46777776665 466667777888899998887666555555667888999999998863
No 88
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=32.49 E-value=1.6e+02 Score=26.47 Aligned_cols=64 Identities=11% Similarity=-0.010 Sum_probs=45.7
Q ss_pred HHHcCC-CCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAGI-NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g~-~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.|. ++|+.|+.. ..+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 345554 677665554 4577777788888899998876655544456667788899999998764
No 89
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=32.40 E-value=2.7e+02 Score=24.73 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=45.2
Q ss_pred HHHcC-CCCCC--EEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGD--VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd--~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
+.+.| +++|+ .|+. ...+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34455 56776 5444 45667777778888899998876655444455667788899999998865
No 90
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=31.60 E-value=1.9e+02 Score=26.48 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=47.9
Q ss_pred cccHHHHHHHH--HHHH-HHHHHc-CCCCCCEEEEECC-CCHHHHHHHHHHHHhcCEE-eeCCCCCCHHHHHHHHhhCCc
Q 009867 30 DLTYSRIHELV--ERAA-SRLVAA-GINAGDVVALTFP-NTVEFVIMFLAVIRARATA-APLNAAYTPDEFEFYLSDSES 103 (523)
Q Consensus 30 ~~Ty~el~~~~--~~~A-~~L~~~-g~~~gd~V~i~~~-n~~~~~~~~la~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~ 103 (523)
.+++.+..... -..| ..|.+. ++++|++|+|... -.+=.+++.+|- ..|+.. +..+..-..++....+++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46776643321 1122 234443 8999999999998 456666666655 468744 444444444555566778888
Q ss_pred eEEEe
Q 009867 104 KLLLT 108 (523)
Q Consensus 104 ~~ii~ 108 (523)
..++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 88774
No 91
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=31.39 E-value=34 Score=30.10 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECC
Q 009867 42 RAASRLVAAGINAGDVVALTFP 63 (523)
Q Consensus 42 ~~A~~L~~~g~~~gd~V~i~~~ 63 (523)
.+...|+++|+++||.|.++..
T Consensus 19 ~l~~~L~~LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 19 TITNDLRKLGLKKGMTVIVHSS 40 (268)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 4455688899999999999986
No 92
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=31.20 E-value=1.6e+02 Score=28.81 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=47.1
Q ss_pred HHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 009867 48 VAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA 110 (523)
Q Consensus 48 ~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 110 (523)
.+.| +++|+.|+. ...+-.-..+.++|...|..++.+-|...+......++..+++++++..
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3455 578887765 4556677788889999999888776665556677788999999999875
No 93
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=29.81 E-value=3.6e+02 Score=25.42 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHH-HHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEe
Q 009867 52 INAGDVVALTFPNTVEFVIMFL-AVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT 108 (523)
Q Consensus 52 ~~~gd~V~i~~~n~~~~~~~~l-a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 108 (523)
+++||.|++..+......-.+- .+...|+.++.++.. +.+.+...++. +.++|++
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~ 173 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFL 173 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEE
Confidence 5677777666555444433332 445567776666655 55666666543 4555554
No 94
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=29.49 E-value=1e+02 Score=22.03 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhhcC--------------CceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Q 009867 3 GVTLIGLLNQVIDQFS--------------SKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p--------------~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~ 63 (523)
..|+.+++.+...++| ...++...+ +.+.. +.-++.||.|+++-|
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg-~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNG-RYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETT-BCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECC-EECCC---------------CCCCCCCCEEEEECC
Confidence 5699999999988876 334443343 34431 346899999999865
No 95
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.37 E-value=1.1e+02 Score=28.32 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=40.0
Q ss_pred HHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC-----CCHHHHHHHHhhCC--ceEEEec
Q 009867 46 RLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA-----YTPDEFEFYLSDSE--SKLLLTP 109 (523)
Q Consensus 46 ~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~ii~~ 109 (523)
.|...++++||.|.+-.+....+. -++...|+.++.++.+ .+.+.+...+..-+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 344557899999988877655433 3456788887765532 47788888774334 6666643
No 96
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=29.21 E-value=39 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=22.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~ 63 (523)
+.+|-.+|.+ .|+++|+++||.|.++..
T Consensus 20 ~~~T~~~L~~-------~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 20 ELVTRDRLAS-------DLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp CEECHHHHHH-------HHHHHTCCTTCEEEEEEC
T ss_pred CCcCHHHHHH-------HHHHcCCCCCCEEEEEec
Confidence 5677777665 588889999999999976
No 97
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=29.15 E-value=1.4e+02 Score=26.75 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEECC-CCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceE
Q 009867 30 DLTYSRIHELVER--AA-SRLVAAGINAGDVVALTFP-NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKL 105 (523)
Q Consensus 30 ~~Ty~el~~~~~~--~A-~~L~~~g~~~gd~V~i~~~-n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 105 (523)
.+++.+....... .| ..|...++++|++|+|... -.+=..++.+| ...|+.++.+. +.+. ..++++.++..
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677665433222 12 2334458999999999974 45556666655 45688766553 4444 55667777777
Q ss_pred EEec
Q 009867 106 LLTP 109 (523)
Q Consensus 106 ii~~ 109 (523)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6643
No 98
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=29.08 E-value=39 Score=29.87 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Q 009867 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63 (523)
Q Consensus 30 ~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~ 63 (523)
.+|..+| ...|+++|+++||.|.++..
T Consensus 12 ~~T~~~L-------~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 12 PRTKQSI-------TEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp CBCHHHH-------HHHHHHHTCCTTCEEEEEEC
T ss_pred CcCHHHH-------HHHHHHcCCCCCCEEEEEec
Confidence 4565555 45688899999999999986
No 99
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=28.95 E-value=2e+02 Score=26.25 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC-------CCHHHHHHHHhhCCceEEEec
Q 009867 52 INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA-------YTPDEFEFYLSDSESKLLLTP 109 (523)
Q Consensus 52 ~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~ 109 (523)
.++||.|++..+....+ ..++...|+.++.++.. .+.+.+...++..++++|++.
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 46889888777766553 33556778888777653 678999999986677877654
No 100
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=28.71 E-value=2.3e+02 Score=25.68 Aligned_cols=56 Identities=7% Similarity=-0.030 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC----CCHHHHHHHHhhCCceEEEec
Q 009867 53 NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA----YTPDEFEFYLSDSESKLLLTP 109 (523)
Q Consensus 53 ~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 109 (523)
++||.|++..+....+.-..-++...|+.++.++.. .+.+.+...+.. +++++++.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 467777666555544444443444556666555432 355666666643 45555543
No 101
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.72 E-value=1.4e+02 Score=20.20 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
..+.+.+|.+. +.+.+..+++.|.++|........+...+...|.
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 56777776543 4445677888999999988877777777777775
No 102
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=26.23 E-value=2e+02 Score=26.42 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=38.7
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCC--C---CCHHHHHHHHhhCCceEEEec
Q 009867 47 LVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA--A---YTPDEFEFYLSDSESKLLLTP 109 (523)
Q Consensus 47 L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~--~---~~~~~l~~~l~~~~~~~ii~~ 109 (523)
+...++++||.|++..+...... -++...|+.++.++. . ...+.+...++. +++++++.
T Consensus 71 ~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 33445789999888877765543 344567877665543 2 567888887764 56777654
No 103
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=25.36 E-value=2.2e+02 Score=31.71 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=60.3
Q ss_pred eechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEE
Q 009867 180 PLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256 (523)
Q Consensus 180 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l 256 (523)
.+|...+...+..+.. ..++.+++++...++-+ ..++..+++.+..|+..+..++ ....+.+...+++.++..+
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s--~~~vv~~lailkaG~~~vpldp-~~p~~rl~~il~~~~~~~v 565 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRS--LELVIGILGVLKAGAAYLPVDP-KLPEDRISYMLADSAAACL 565 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSS--HHHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHTCCEE
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCC--HHHHHHHHHHHHHCCEEEEECC-CCHHHHHHHHHHHcCCCEE
Confidence 5788888766655543 34788999999988854 3445568899999998888765 5577788888888899988
Q ss_pred eechHH
Q 009867 257 TAVPTI 262 (523)
Q Consensus 257 ~~~P~~ 262 (523)
+..+..
T Consensus 566 l~~~~~ 571 (1304)
T 2vsq_A 566 LTHQEM 571 (1304)
T ss_dssp EECSTT
T ss_pred EECcch
Confidence 876654
No 104
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=24.87 E-value=2.1e+02 Score=24.62 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc----CEEeeCCCCCC--HHHHHHHHhhCCce
Q 009867 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR----ATAAPLNAAYT--PDEFEFYLSDSESK 104 (523)
Q Consensus 31 ~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G----~~~v~l~~~~~--~~~l~~~l~~~~~~ 104 (523)
+.+.++. +++..+|++. .++.|++.+.-++|+.++..-|.+++ ...+.++...+ .+....+.+..+.+
T Consensus 4 ~~~~~~~---~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~ 77 (257)
T 2e18_A 4 LDYDKVI---ERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIG 77 (257)
T ss_dssp ECHHHHH---HHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCE
T ss_pred CCHHHHH---HHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCC
Confidence 4455544 4455666665 35679999999999988887777765 23444444332 22334444555666
Q ss_pred EEEec
Q 009867 105 LLLTP 109 (523)
Q Consensus 105 ~ii~~ 109 (523)
+.+.+
T Consensus 78 ~~~i~ 82 (257)
T 2e18_A 78 YKVIN 82 (257)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 55544
No 105
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=24.08 E-value=3.6e+02 Score=24.21 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=34.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCC--C----CCCHHHHHHHHhh----CCceEEEec
Q 009867 52 INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN--A----AYTPDEFEFYLSD----SESKLLLTP 109 (523)
Q Consensus 52 ~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~--~----~~~~~~l~~~l~~----~~~~~ii~~ 109 (523)
+++||.|++..+........ +...|+.++.++ . ..+.+.+...+++ -+++++++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46788888777766554433 556677766655 2 2367777777764 355555544
No 106
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.78 E-value=3.2e+02 Score=24.64 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHHH-HHhcCEEeeCCCCC------------CHHHHHHHHhhCCceEEEecc
Q 009867 51 GINAGDVVALTFPNTV------EFVIMFLAV-IRARATAAPLNAAY------------TPDEFEFYLSDSESKLLLTPA 110 (523)
Q Consensus 51 g~~~gd~V~i~~~n~~------~~~~~~la~-~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~ 110 (523)
-+++||+|+|+.|.+. +-+-..... -..|..++.-+... ..+++...+.+-..++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5789999999998641 222222222 23466665433211 244566666667777777653
No 107
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=23.70 E-value=2.6e+02 Score=25.24 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=47.5
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 47 LVAAG-INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 47 L~~~g-~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
..+.| +++++.|+.. ..+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34555 5778876665 4567778888888999998887766555556677889999999999864
No 108
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=23.36 E-value=1.3e+02 Score=27.51 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=43.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch
Q 009867 54 AGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN 113 (523)
Q Consensus 54 ~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 113 (523)
+.+.|+-. ..+-.-..+.++|.+.|..++.+-|...+......++..++++++++....
T Consensus 75 ~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 75 KPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp CCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 33444443 456777788888999999887776665556677888999999999987643
No 109
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=23.03 E-value=1.8e+02 Score=26.84 Aligned_cols=56 Identities=9% Similarity=-0.095 Sum_probs=42.5
Q ss_pred EEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh
Q 009867 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA 114 (523)
Q Consensus 59 ~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 114 (523)
.+....+-.-..+.++|.+.|..++.+-|...+......++..++++++++.....
T Consensus 96 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 96 FVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred EEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 34444477778888889999998887766666667788889999999999865443
No 110
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.75 E-value=2.5e+02 Score=25.66 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHH--cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 46 RLVA--AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 46 ~L~~--~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
.|.+ .++++|++|+|...-.+=..++.+|-...|+.++.++. +++.+ .++++.++..++...+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEeccc
Confidence 3445 68999999999999666666777665443876665543 34444 3456788888775443
No 111
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=22.19 E-value=4.5e+02 Score=23.99 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=38.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhC---CceEEEecc
Q 009867 52 INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDS---ESKLLLTPA 110 (523)
Q Consensus 52 ~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~ 110 (523)
.++||.|++-.+....+.- ++...|+.+++++. .+.+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 5688988888877665533 45567888887765 5678888888765 566776543
No 112
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=21.37 E-value=3.9e+02 Score=24.25 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHHHH-HhcCEEeeCCCC------------CCHHHHHHHHhhCCceEEEecc
Q 009867 51 GINAGDVVALTFPNTV------EFVIMFLAVI-RARATAAPLNAA------------YTPDEFEFYLSDSESKLLLTPA 110 (523)
Q Consensus 51 g~~~gd~V~i~~~n~~------~~~~~~la~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~ 110 (523)
-+++||+|+|+.|.+. +-+-.....+ ..|..++.-+.. ...+++...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5789999999999762 2222223223 347766643221 1234455566666677777653
No 113
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=20.86 E-value=1.6e+02 Score=18.95 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~ 63 (523)
..|+.+++.+.. ..++.+++...+ +-+...+.. +.-++.||+|.++-+
T Consensus 15 ~~tv~~ll~~l~-~~~~~v~vavN~-~~v~~~~~~-----------~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 15 GQTVHELLEQLD-QRQAGAALAINQ-QIVPREQWA-----------QHIVQDGDQILLFQV 62 (66)
T ss_dssp TCCHHHHHHHHT-CCCSSEEEEETT-EEECHHHHT-----------TCCCCTTEEECEEES
T ss_pred CCcHHHHHHHcC-CCCCCEEEEECC-EECCchhcC-----------CcCCCCCCEEEEEee
Confidence 468999998874 345666655444 455554443 235789999998754
No 114
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.59 E-value=2.5e+02 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=38.4
Q ss_pred HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC----CCHHHHHHHHhhC--CceEEEec
Q 009867 48 VAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA----YTPDEFEFYLSDS--ESKLLLTP 109 (523)
Q Consensus 48 ~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 109 (523)
...++++||.|.+..+...... .++...|+.++.++.+ .+.+.+...++.. ++++|++.
T Consensus 65 ~~l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 65 RVAGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp HHTTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred HHcCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 3345789999988887665543 3344578777666542 4678888888764 45666554
No 115
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=20.48 E-value=5e+02 Score=23.85 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=35.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC----CCHHHHHHHHhhCCceEEEec
Q 009867 53 NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA----YTPDEFEFYLSDSESKLLLTP 109 (523)
Q Consensus 53 ~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 109 (523)
++||.|++..+....+......+...|+.++.++.+ ...+.+...+.. +++++++.
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 170 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIM 170 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECC
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEe
Confidence 478998888777766655544445567766655443 357777777764 55666654
No 116
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=20.44 E-value=2.8e+02 Score=26.41 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=37.4
Q ss_pred cCCCCCCEEEEECCCC-HHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEec
Q 009867 50 AGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP 109 (523)
Q Consensus 50 ~g~~~gd~V~i~~~n~-~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 109 (523)
.++++|++|+|....+ +=.+++.+| ...|+.++.+.. +.+.+. .+++.++..++..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~~-~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKAE-ICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHHH-HHHhhCCcEEEec
Confidence 4789999999999854 555555555 456887666542 455544 4567788777643
No 117
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=20.36 E-value=4.9e+02 Score=23.72 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC-EEeeCCCCCCHHHHHHHHhhCCceEEEe
Q 009867 47 LVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA-TAAPLNAAYTPDEFEFYLSDSESKLLLT 108 (523)
Q Consensus 47 L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 108 (523)
+...++++|++|+|...-.+-.+++.+|- ..|+ .++.++. +++. ..++++.++..++.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 44458999999999988555566655554 5687 5655543 2333 34556677777664
Done!