BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009868
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/517 (47%), Positives = 335/517 (64%), Gaps = 24/517 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTS+R I++DH + Q+E Q +P AGWVEH P +I +VR + AL
Sbjct: 3 YVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLAL 62
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+ G+ + A+G+TNQRET V+W K+TG P+YNAIVW D RT +K+ EL
Sbjct: 63 TR----GNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRT----QKIVDELG 114
Query: 128 G--GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
G G + VGLP++TYFS K+ W+++NV+ +E +KGD LFG DTW++WN+TGG
Sbjct: 115 GDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGG 174
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
GG+HVTDV+NASRTMLM+L TL W + +GIP +LP I S+SE+ G +
Sbjct: 175 TEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLV 234
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
G+PI+G LGDQ AA GQAC + G+AK+TYGTG F+L+NTG E V SK+GLL+T+ +K+
Sbjct: 235 PGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKI 294
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
G AP YALEGSIA+ G+ VQWLRD+LG+ A ++E LA +V GG YFVPAF+GLF
Sbjct: 295 G-DAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLF 353
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP+WR DARG +G+TR+ ++ HIARA LE+ FQ ++V+D+M D+ GV D
Sbjct: 354 APYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNADS---GV--DLTE-- 406
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFK-EEEIFDSG 483
LRVDGG N LLMQ QAD LG V+RP ETT +G +K E+++ D+
Sbjct: 407 -LRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVIDNW 465
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
K + P + R++ +W +AV +T D
Sbjct: 466 AEDK---RWSPSMESGERERLYRNWKKAVTKTMEWVD 499
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 322/511 (63%), Gaps = 27/511 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I A+DQGTTS+R ++ DH A I Q EF Q YP+ GWVEH+PMEI + + + L
Sbjct: 5 YIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + AIG+TNQRETT++W K TG P+YNAIVW RT+ +C L+++
Sbjct: 65 AKADISSDQI----AAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRD-- 118
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + + GL I YFS K+ W++++V+ +E ++G+ LFGT+DTWLIW +T
Sbjct: 119 GLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---Q 175
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI---GKGWP 244
G +HVTD +NASRTML N+ TLDWD LE L IP E+LP++ +SE+ G+ GKG
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGG- 234
Query: 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
T IPISG GDQ AA+ GQ C K+G AK+TYGTG F+LMNTGE+ VKS++GLL+T+A
Sbjct: 235 -TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
GP NYALEG++ +AGA++QWLRD + +I+ A + E A +V +T GVY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
AP+W ARG G+TR + HI RA LES+ +Q +DVL++MQ D+ G+ A
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA--- 405
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSG 483
LRVDGGA NN LMQ Q+D+LG+ V RP E T +G + + + +
Sbjct: 406 --LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFW--QNLDELQ 461
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVER 514
E+ F+P + R + W +AV+R
Sbjct: 462 EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 322/511 (63%), Gaps = 27/511 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I A+DQGTTS+R ++ DH A I Q EF Q YP+ GWVEH+PMEI + + + L
Sbjct: 5 YIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + AIG+TNQRETT++W K TG P+YNAIVW RT+ +C L+++
Sbjct: 65 TKADISSDQI----AAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRD-- 118
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + + GL I YFS K+ W++++V+ +E ++G+ LFGT+DTWLIW +T
Sbjct: 119 GLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---Q 175
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI---GKGWP 244
G +HVTD +NASRTML N+ TLDWD LE L IP E+LP++ +SE+ G+ GKG
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGG- 234
Query: 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
T IPISG GDQ AA+ GQ C K+G AK+TYGTG F+LMNTGE+ VKS++GLL+T+A
Sbjct: 235 -TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
GP NYALEG++ +AGA++QWLRD + +I+ A + E A +V +T GVY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
AP+W ARG G+TR + HI RA LES+ +Q +DVL++MQ D+ G+ A
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA--- 405
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSG 483
LRVDGGA NN LMQ Q+D+LG+ V RP E T +G + + + +
Sbjct: 406 --LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFW--QNLDELQ 461
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVER 514
E+ F+P + R + W +AV+R
Sbjct: 462 EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 322/511 (63%), Gaps = 27/511 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I A+DQGTTS+R ++ DH A I Q EF Q YP+ GWVEH+PMEI + + + L
Sbjct: 5 YIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + AIG+TNQRETT++W K TG P+YNAIVW RT+ +C L+++
Sbjct: 65 AKADISSDQI----AAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRD-- 118
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + + GL I YFS K+ W++++V+ +E ++G+ LFGT+DTWLIW +T
Sbjct: 119 GLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---Q 175
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI---GKGWP 244
G +HVTD +NASRTML N+ TLDWD LE L IP E+LP++ +SE+ G+ GKG
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGG- 234
Query: 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
T IPISG GDQ AA+ GQ C K+G AK+TYGTG F+LMNTGE+ VKS++GLL+T+A
Sbjct: 235 -TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
GP NYALEG++ +AGA++QWLRD + +I+ A + E A +V +T GVY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
AP+W ARG G+TR + HI RA LES+ +Q +DVL++MQ D+ G+ A
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA--- 405
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSG 483
LRVDGGA NN LMQ Q+D+LG+ V RP E T +G + + + +
Sbjct: 406 --LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFW--QNLDELQ 461
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVER 514
E+ F+P + R + W +AV+R
Sbjct: 462 EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 322/511 (63%), Gaps = 27/511 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I A+DQGTTS+R ++ DH A I Q EF Q YP+ GWVEH+PMEI + + + L
Sbjct: 5 YIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTLVEVL 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + AIG+TNQRETT++W K TG P+YNAIVW RT+ +C L+++
Sbjct: 65 AKADISSDQI----AAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRD-- 118
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + + GL I YFS K+ W++++V+ +E ++G+ LFGT+DTWLIW +T
Sbjct: 119 GLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---Q 175
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI---GKGWP 244
G +HVTD +NASRTML N+ TLDWD LE L IP E+LP++ +SE+ G+ GKG
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGG- 234
Query: 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
T IPISG GDQ AA+ GQ C K+G AK+TYGTG F+LMNTGE+ VKS++GLL+T+A
Sbjct: 235 -TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
GP NYALEG++ +AGA++QWLRD + +I+ A + E A +V +T GVY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
AP+W ARG G+TR + HI RA LES+ +Q +DVL++MQ D+ G+ A
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA--- 405
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSG 483
LRVDGGA NN LMQ Q+D+LG+ V RP E T +G + + + +
Sbjct: 406 --LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFW--QNLDELQ 461
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVER 514
E+ F+P + R + W +AV+R
Sbjct: 462 EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/511 (46%), Positives = 317/511 (62%), Gaps = 30/511 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
F+ A+DQGTTS+R I++ + RP+ + EF Q YP+ GWVEH+P+EI E+ + L
Sbjct: 3 FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVL 62
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+A A+ V A+G+TNQRETT+LW + TG PL+NAIVW D RT+ +C L +
Sbjct: 63 RRAGAEAGEV----LALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAK-- 116
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + F E GL YFS KL+W++ENV +K + G FGT+DTWLIWNLTGG
Sbjct: 117 GLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGK- 175
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWP-IT 246
+H TD +NASRT+L NL TL WD LE LGIPA +LP++ + G G+ P +
Sbjct: 176 --VHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSD---GDFGETLPELL 230
Query: 247 G--IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
G +PI G LGDQ AA+ GQA GE K TYGTGAF+L+NTG+ V S+ GLL+T+A+
Sbjct: 231 GAPVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWS 290
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
LG +A YALEGS+ +AGAAV WL++ +G+I ++E+E LA V TG VYFVPAF GL
Sbjct: 291 LGGRA--TYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGL 347
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
AP+W ARG +G+TR TS+AH+ARA LE + FQV+DV+ +M+++A GV
Sbjct: 348 GAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEA---GVRLK---- 400
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSG 483
+L+ DGG N L ++IQADLLG PV P ETT G E D
Sbjct: 401 -VLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGALSPE---DVA 456
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVER 514
R + + F P + E R+ W AVER
Sbjct: 457 GRFREAERFLPTMPEGRREALYRRWREAVER 487
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/516 (43%), Positives = 320/516 (62%), Gaps = 23/516 (4%)
Query: 2 AKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRV 61
+ A E +I +IDQGTTS+R I+++ + G Q EF Q++P++GWVEH+ EI SV
Sbjct: 1 SNAXEKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLA 60
Query: 62 CMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRK 121
+ +++ + IG+TNQRETTV+W K TG P+Y+AIVW +T S+C +
Sbjct: 61 VXTEVINENDVRADQI----AGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSE 116
Query: 122 LEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWN 181
L+++ G + F + GL + YF+ K+ W+++NV+ +E + GD LFGTIDTWL+W
Sbjct: 117 LKQQ--GYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWK 174
Query: 182 LTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK-IG 240
L+G H+TD SNASRT+ N+ L+WD LE L +P LP++ ++SE+ GK I
Sbjct: 175 LSGKA---AHITDYSNASRTLXFNIHDLEWDDELLELLTVPKNXLPEVKASSEVYGKTID 231
Query: 241 KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
+ +PI+G GDQ AA+ GQAC ++G+ K+TYGTG F L NTG++ VKS+ GLL+T
Sbjct: 232 YHFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFXLXNTGDKAVKSESGLLTT 291
Query: 300 LAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPA 359
+A+ G NYALEGSI ++G+A+QWLRD L I+SA + E A +V+ST GVY VPA
Sbjct: 292 IAY--GIDGKVNYALEGSIFVSGSAIQWLRDGLRXINSAPQSESYATRVDSTEGVYVVPA 349
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
F GL P+W +ARG G+TR T K H RA LES+C+Q +DV ++ KD+ G+ D
Sbjct: 350 FVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVXEAXSKDS---GI--D 404
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEI 479
+S LRVDGGA NN + Q QAD++ + V RP ETT +G ++ ++
Sbjct: 405 VQS---LRVDGGAVKNNFIXQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKD- 460
Query: 480 FDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
D + K F P +E R+K W +AVE T
Sbjct: 461 -DIAKNWKLEEKFDPKXDEGEREKLYRGWKKAVEAT 495
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/521 (44%), Positives = 325/521 (62%), Gaps = 37/521 (7%)
Query: 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
A++ ++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +
Sbjct: 1 AEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVI 60
Query: 64 AKALDKATADGHNVDSGLK-----AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSV 118
A A ++SG++ IG+TNQRETTV+W K+TG P+ NAIVW ++S +
Sbjct: 61 AGAF---------IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPI 111
Query: 119 CRKLEKELPGGKTHFL-EAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTW 177
+L+ + G T + E GL I YFSA K+ W+++N++ +E G+ LFGTID+W
Sbjct: 112 ADQLKVD---GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSW 168
Query: 178 LIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
L+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G
Sbjct: 169 LVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYG 225
Query: 238 KIGKGWPITG--IPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKH 294
+ + G +PI+G GDQ AA+ GQ A +KG K+TYGTGAFI+MNTGEE S +
Sbjct: 226 HT-RSYAFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDN 284
Query: 295 GLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGV 354
LL+T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + V
Sbjct: 285 DLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEV 342
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
Y VPAF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+
Sbjct: 343 YVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS--- 399
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVF 474
G+ LL+VDGGA N+LLMQ QAD+L V R A++ETT +G +
Sbjct: 400 GI-----DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFW 454
Query: 475 KEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
K+ + S + F P + E R E W +AV T
Sbjct: 455 KDLDELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAVAAT 493
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/521 (44%), Positives = 325/521 (62%), Gaps = 37/521 (7%)
Query: 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
A++ ++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +
Sbjct: 2 AEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVI 61
Query: 64 AKALDKATADGHNVDSGLK-----AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSV 118
A A ++SG++ IG+TNQRETTV+W K+TG P+ NAIVW ++S +
Sbjct: 62 AGAF---------IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPI 112
Query: 119 CRKLEKELPGGKTHFL-EAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTW 177
+L+ + G T + E GL I YFSA K+ W+++N++ +E G+ LFGTID+W
Sbjct: 113 ADQLKVD---GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSW 169
Query: 178 LIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
L+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G
Sbjct: 170 LVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYG 226
Query: 238 KIGKGWPITG--IPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKH 294
+ + G +PI+G GDQ AA+ GQ A +KG K+TYGTGAFI+MNTGEE S +
Sbjct: 227 HT-RSYEFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDN 285
Query: 295 GLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGV 354
LL+T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + V
Sbjct: 286 DLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEV 343
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
Y VPAF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+
Sbjct: 344 YVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS--- 400
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVF 474
G+ LL+VDGGA N+LLMQ QAD+L V R A++ETT +G +
Sbjct: 401 GI-----DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFW 455
Query: 475 KEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
K+ + S + F P + E R E W +AV T
Sbjct: 456 KDLDELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAVAAT 494
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/521 (44%), Positives = 325/521 (62%), Gaps = 37/521 (7%)
Query: 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
A++ ++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +
Sbjct: 2 AEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVI 61
Query: 64 AKALDKATADGHNVDSGLK-----AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSV 118
A A ++SG++ IG+TNQRETTV+W K+TG P+ NAIVW ++S +
Sbjct: 62 AGAF---------IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPI 112
Query: 119 CRKLEKELPGGKTHFL-EAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTW 177
+L+ + G T + E GL I YFSA K+ W+++N++ +E G+ LFGTID+W
Sbjct: 113 ADQLKVD---GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSW 169
Query: 178 LIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
L+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G
Sbjct: 170 LVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYG 226
Query: 238 KIGKGWPITG--IPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKH 294
+ + G +PI+G GDQ AA+ GQ A +KG K+TYGTGAFI+MNTGEE S +
Sbjct: 227 HT-RSYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDN 285
Query: 295 GLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGV 354
LL+T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + V
Sbjct: 286 DLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEV 343
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
Y VPAF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+
Sbjct: 344 YVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS--- 400
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVF 474
G+ LL+VDGGA N+LLMQ QAD+L V R A++ETT +G +
Sbjct: 401 GI-----DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFW 455
Query: 475 KEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
K+ + S + F P + E R E W +AV T
Sbjct: 456 KDLDELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAVAAT 494
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/521 (44%), Positives = 325/521 (62%), Gaps = 37/521 (7%)
Query: 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
A++ ++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +
Sbjct: 14 AEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVI 73
Query: 64 AKALDKATADGHNVDSGLK-----AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSV 118
A A ++SG++ IG+TNQRETTV+W K+TG P+ NAIVW ++S +
Sbjct: 74 AGAF---------IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPI 124
Query: 119 CRKLEKELPGGKTHFL-EAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTW 177
+L+ + G T + E GL I YFSA K+ W+++N++ +E G+ LFGTID+W
Sbjct: 125 ADQLKVD---GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSW 181
Query: 178 LIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
L+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G
Sbjct: 182 LVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYG 238
Query: 238 KIGKGWPITG--IPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKH 294
+ + G +PI+G GDQ AA+ GQ A +KG K+TYGTGAFI+MNTGEE S +
Sbjct: 239 HT-RSYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDN 297
Query: 295 GLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGV 354
LL+T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + V
Sbjct: 298 DLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEV 355
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
Y VPAF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+
Sbjct: 356 YVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS--- 412
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVF 474
G+ LL+VDGGA N+LLMQ QAD+L V R A++ETT +G +
Sbjct: 413 GI-----DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFW 467
Query: 475 KEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
K+ + S + F P + E R E W +AV T
Sbjct: 468 KDLDELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAVAAT 506
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/521 (44%), Positives = 325/521 (62%), Gaps = 37/521 (7%)
Query: 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
A++ ++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +
Sbjct: 1 AEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVI 60
Query: 64 AKALDKATADGHNVDSGLK-----AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSV 118
A A ++SG++ IG+TNQRETTV+W K+TG P+ NAIVW ++S +
Sbjct: 61 AGAF---------IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPI 111
Query: 119 CRKLEKELPGGKTHFL-EAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTW 177
+L+ + G T + E GL I YFSA K+ W+++N++ +E G+ LFGTID+W
Sbjct: 112 ADQLKVD---GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSW 168
Query: 178 LIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
L+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G
Sbjct: 169 LVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYG 225
Query: 238 KIGKGWPITG--IPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKH 294
+ + G +PI+G GDQ AA+ GQ A +KG K+TYGTGAFI+MNTGEE S +
Sbjct: 226 HT-RSYHFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDN 284
Query: 295 GLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGV 354
LL+T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + V
Sbjct: 285 DLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEV 342
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
Y VPAF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+
Sbjct: 343 YVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS--- 399
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVF 474
G+ LL+VDGGA N+LLMQ QAD+L V R A++ETT +G +
Sbjct: 400 GI-----DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFW 454
Query: 475 KEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
K+ + S + F P + E R E W +AV T
Sbjct: 455 KDLDELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAVAAT 493
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/514 (44%), Positives = 321/514 (62%), Gaps = 37/514 (7%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +A A
Sbjct: 1 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 60
Query: 68 DKATADGHNVDSGLK-----AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKL 122
++SG++ IG+TNQRETTV+W K+TG P+ NAIVW ++S + +L
Sbjct: 61 ---------IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQL 111
Query: 123 EKELPGGKTHFL-EAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWN 181
+ + G T + E GL I YFSA K+ W+++N++ +E G+ LFGTID+WL+W
Sbjct: 112 KVD---GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWK 168
Query: 182 LTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK 241
LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G +
Sbjct: 169 LT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-R 224
Query: 242 GWPITG--IPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLS 298
+ G +PI+G GDQ AA+ GQ A +KG K+TYGTGAFI+MNTGEE S + LL+
Sbjct: 225 SYHFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLT 284
Query: 299 TLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVP 358
T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + VY VP
Sbjct: 285 TIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVP 342
Query: 359 AFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIK 418
AF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+ G+
Sbjct: 343 AFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI-- 397
Query: 419 DAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEE 478
LL+VDGGA N+LLMQ QAD+L V R A++ETT +G +K+ +
Sbjct: 398 ---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLD 454
Query: 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAV 512
S + F P + E R E W +AV
Sbjct: 455 ELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAV 486
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/515 (45%), Positives = 315/515 (61%), Gaps = 29/515 (5%)
Query: 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65
E F+ ++D+GTTS R II+D ++ G Q EF Q YP GWVEH P EI ++ +
Sbjct: 2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKD 61
Query: 66 ALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKE 125
A+ A + + + AIG+TNQRETT++W K G PLYNAIVW RT+ + ++++E
Sbjct: 62 AIQSARIEPNQI----AAIGVTNQRETTLVWDKD-GKPLYNAIVWQCRRTAEMVEEIKRE 116
Query: 126 LPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
T E GL YFSA KL W+++NV ++E +KG+ +FGT+DT+LI+ LTG
Sbjct: 117 Y---GTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGE 173
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
HVTD SNASRTML N+K LDWD LE IP +LP++ +SE+ G K
Sbjct: 174 -----HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLG 228
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
IP+SG GDQ AA+ GQA + G K+TYGTG+FIL+NT + V+ S + LL+T+A+ L
Sbjct: 229 AEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDN-LLTTIAWGL 287
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
+ +YALEGSI + GAAVQWLRD + II ASE EELA ++ S GVYFVPAF GL
Sbjct: 288 NGR--VSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLG 345
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP+W ARG+ IGITR T + H+ARA LE++ + +DV+D M+K IK+
Sbjct: 346 APYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKLV----QIKE----- 396
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSGE 484
LRVDGGAT N+ LMQ QAD+L VIRP ETT + + + + E
Sbjct: 397 -LRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTR--EIAE 453
Query: 485 RTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLA 519
K F+P ++E+ R++ + W AV+R A
Sbjct: 454 LWKAERIFEPKMDEKTRERLYKGWKEAVKRAMGWA 488
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/510 (43%), Positives = 304/510 (59%), Gaps = 20/510 (3%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQGTTSTR I++D + G Q EF Q +P++GWVEH+P EI ++V + +A+
Sbjct: 27 YILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAI 86
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+K+ +++ AIG+TNQRET V+W + TG P++NAIVW D RT++ C KL+K+
Sbjct: 87 EKSGITANDI----AAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKK-- 140
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + F++ GL + YFS KL W++ NV + KG+ FGTIDT+LIW LTGG
Sbjct: 141 GLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGE- 199
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
TD +NASRT+L N+ WD E L +P E LP++ + G
Sbjct: 200 --CFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEXLPEVKDCAADFGVTDPSLFGAA 257
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
IPI G GDQ AA +GQAC K G KSTYGTG F L+NTG++ V+SK+ LL+T+A++L
Sbjct: 258 IPILGVAGDQQAATIGQACFKPGXLKSTYGTGCFALLNTGKDXVRSKNRLLTTIAYRL-- 315
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
T YALEGSI +AGAAVQWLRD L +I +A + LA + + VY VPAF GL AP
Sbjct: 316 DGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAP 375
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
W DARG G TR T A ARA LE++C+Q +D+L++ KD G ++ +L
Sbjct: 376 HWDPDARGAIFGXTRNTGPAEFARAALEAVCYQTRDLLEAXHKDWRRNG------NDTVL 429
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSGERT 486
RVDGG ++ Q +DLL +PV RP +ETT GV+ +E F +
Sbjct: 430 RVDGGXVASDWTXQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAF--AKSW 487
Query: 487 KTSTTFKPVLNEEFRKKKAESWCRAVERTF 516
F+P +E RK K + W AV+RT
Sbjct: 488 ARDRRFEPHXDEATRKVKLKGWRSAVKRTL 517
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 198/517 (38%), Positives = 292/517 (56%), Gaps = 31/517 (5%)
Query: 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALD 68
I +IDQ T ST+ YD + + S+ + Q + GW EH+P+EI+ ++ M + +
Sbjct: 10 ILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI- 68
Query: 69 KATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPG 128
K D + +K IG+TNQRET ++W + TG PLYNAIVW+D R + + +
Sbjct: 69 KVLKDKY-TSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNN 127
Query: 129 GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNG 188
+ G +TYFSA K+LW+++N +K+ I G A+ G I+TWLI+NLT G
Sbjct: 128 NDIQ--KKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN-- 183
Query: 189 GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEILPKIVSNSEIIGKI-GKGWP-I 245
TDV+NASRT+LM++ TL WD+ + I +LP+I SN G + + P
Sbjct: 184 --CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDY 241
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
IPI+GC+GDQ +A +GQA +GEAK TYGTG F+L+NTGE+VV S GL++T+ +K
Sbjct: 242 LNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKF 301
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
YALEGSI AG+ V WL + +I SE ++ + +T GV FVPAF+GL+
Sbjct: 302 NDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLY 360
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP WR DAR G+T T ++HI RA+LE + FQ+ +++DS+ D G+ +
Sbjct: 361 APRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDM---GI----EMLH 413
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSGE 484
+LR DGG T N MQ +D++ + IE + + E +I+DS +
Sbjct: 414 VLRCDGGMTKNKPFMQFNSDIINTK------IEVSKYKEVTSLGAAVLAGLEVKIWDSLD 467
Query: 485 RTK-----TSTTFKPVLNEEFRKKKAESWCRAVERTF 516
K + F ++++ RKKK W +AVERT
Sbjct: 468 SVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTL 504
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 198/517 (38%), Positives = 292/517 (56%), Gaps = 31/517 (5%)
Query: 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALD 68
I +IDQ T ST+ YD + + S+ + Q + GW EH+P+EI+ ++ M + +
Sbjct: 6 ILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI- 64
Query: 69 KATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPG 128
K D + +K IG+TNQRET ++W + TG PLYNAIVW+D R + + +
Sbjct: 65 KVLKDKY-TSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNN 123
Query: 129 GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNG 188
+ G +TYFSA K+LW+++N +K+ I G A+ G I+TWLI+NLT G
Sbjct: 124 NDIQ--KKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN-- 179
Query: 189 GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEILPKIVSNSEIIGKI-GKGWP-I 245
TDV+NASRT+LM++ TL WD+ + I +LP+I SN G + + P
Sbjct: 180 --CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDY 237
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
IPI+GC+GDQ +A +GQA +GEAK TYGTG F+L+NTGE+VV S GL++T+ +K
Sbjct: 238 LNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKF 297
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
YALEGSI AG+ V WL + +I SE ++ + +T GV FVPAF+GL+
Sbjct: 298 NDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLY 356
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP WR DAR G+T T ++HI RA+LE + FQ+ +++DS+ D G+ +
Sbjct: 357 APRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDM---GI----EMLH 409
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSGE 484
+LR DGG T N MQ +D++ + IE + + E +I+DS +
Sbjct: 410 VLRCDGGMTKNKPFMQFNSDIINTK------IEVSKYKEVTSLGAAVLAGLEVKIWDSLD 463
Query: 485 RTK-----TSTTFKPVLNEEFRKKKAESWCRAVERTF 516
K + F ++++ RKKK W +AVERT
Sbjct: 464 SVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTL 500
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 186/467 (39%), Gaps = 72/467 (15%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I D GTT+T+ ++YD + + S + + G E +P I ++V+ +
Sbjct: 5 YIIGXDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLT 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
K +D + AI ++Q + + L N+I W D S+ + +
Sbjct: 65 QK-------IDGKIAAISWSSQXHSLIGLGSDDEL-LTNSITWADNCAKSIVQDAKNR-- 114
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G G P KLLW+ + E + G I ++I+ LTG +
Sbjct: 115 GFAQQIYRKTGXPXHPXAPIYKLLWLK---NKKTEVFSQAQKWIG-IKEYIIFRLTGKL- 169
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
VTD + A+ T ++NLKTL WD+ L+ L I E LPKI +++I +PI
Sbjct: 170 ----VTDTTXAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVI------FPIK- 218
Query: 248 IPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLS--------- 298
++ LG + K G L G + S H L+
Sbjct: 219 --------TEYVKKLG---IDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRT 267
Query: 299 ---------TLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN 349
+ ++ P T+Y L G + G W R +L A E + L V
Sbjct: 268 IVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTL---FDADETPQDFLDVA 324
Query: 350 STG-----GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVL 404
T + F+P G AP W +ARG +G+TR K ARAV+E + F + D
Sbjct: 325 QTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRXHQKPEXARAVIEGIIFNLYDAA 384
Query: 405 DSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVI 451
++ IK+ K + GG ++ + Q+ A++ P++
Sbjct: 385 SNL---------IKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIV 422
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 173/410 (42%), Gaps = 43/410 (10%)
Query: 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
++IG ID GT+ + I+ + Q + + + T P W E +P + ++ M
Sbjct: 1 MYIG-IDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAM--- 56
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
KA D H++ +KA+G+ Q L L AI+W D R + C LE +
Sbjct: 57 --KALGDQHSLQD-VKALGIAGQMHGATLLDAQQRV-LRPAILWNDGRCAQECTLLEARV 112
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
P + G + F+A KLLW+ + E ++ D + D +L +TG
Sbjct: 113 PQSRV----ITGNLMMPGFTAPKLLWVQRHE---PEIFRQIDKVLLPKD-YLRLRMTGEF 164
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG----KIGKG 242
+D+S+A+ TM +++ DW L+ + + +P + SEI G ++ K
Sbjct: 165 -----ASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKA 219
Query: 243 WPITGIPISGCLGDQHAAMLGQA-CKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLA 301
W + +P+ GD A +G +A + GT + E + + +
Sbjct: 220 WGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSG-VYFAVSEGFLSKPESAVHSFC 278
Query: 302 FKLGPKAPTNYALEGSIAIAGAAVQW------LRDSLGIISSASEIEELALQVNSTGGVY 355
L P + L + A + + W L + +I++A + +E S V+
Sbjct: 279 HAL----PQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADE------SAEPVW 328
Query: 356 FVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLD 405
F+P +G P A+GV G+T +ARAVLE + + + D +D
Sbjct: 329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMD 378
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 116/472 (24%), Positives = 181/472 (38%), Gaps = 68/472 (14%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
+A+ ++V +D GTTST I+ + T P GW E +P + ++ R
Sbjct: 3 LAQGRQVI--GLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNAR 60
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
+A+ K TA + G I +T VL G L +I D R
Sbjct: 61 AVLAEL--KTTAGESDWRPG--GICVTGXLPAVVLLDDR-GAVLRPSIQQSDGRCGDEVA 115
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLI- 179
+L E+ FL G ++ KL W+ + AV AI + I+ L
Sbjct: 116 ELRAEV--DSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSYDYINXLLTG 173
Query: 180 -------WNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSN 232
W L GG + AS T+ +L L IP +P
Sbjct: 174 ERVVDRNWALEGGF--------IDLASGTVEADLVAL---------AHIPPSAVPPAHPT 216
Query: 233 SEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQA-CKKGEAKSTYGTGAFILMNT 285
++G + G P TG+P+ G D A+ L + G+ +G I++ +
Sbjct: 217 HRVLGAVTAEAAALTGLP-TGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVAS 275
Query: 286 GEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI---ISSASEIE 342
KS L L + L P YA G A G+A+ WL L ++ ++++
Sbjct: 276 A--TAKSDPRLY--LDYHL---VPGLYAPNGCXAATGSALNWLAKLLAPEAGEAAHAQLD 328
Query: 343 ELALQVNS-TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401
LA +V + G+ +P F G P A G G++ ++ H+ RA+LE++ +
Sbjct: 329 ALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFR 388
Query: 402 D---VLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPV 450
VLD I A F DGG T + + I AD+L PV
Sbjct: 389 HHVAVLDD----------IGHAPQRFFAS-DGG-TRSRVWXGIXADVLQRPV 428
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FIG +D GT S R ++D Q R +G E T F P+A +VE I ++V + A+
Sbjct: 7 FIG-VDVGTGSARAGVFDLQGRXVGQASREITXFKPKADFVEQSSENIWQAVCNAVRDAV 65
Query: 68 DKATAD-----GHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKL 122
++A + G D+ + L +E L +G N IVW D R + ++
Sbjct: 66 NQADINPIQVKGLGFDATCSLVVL--DKEGNPLTVSPSGRNEQNVIVWXDHRAITQAERI 123
Query: 123 EKELPGGKTHFLEAVGLPISTYFSAVKLLWMMEN 156
K LE VG IS KLLW+ ++
Sbjct: 124 NAT----KHPVLEFVGGVISPEXQTPKLLWLKQH 153
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 106/462 (22%), Positives = 180/462 (38%), Gaps = 53/462 (11%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I D GTT + + D + + G VE + + ++V+ +A +
Sbjct: 6 YIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQR-IASSW 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
++ D V AI L+ Q + + + PL+ A+++ D R ++
Sbjct: 65 WQSGVDARRV----SAIVLSGQXQNFLPLDQDHE-PLHRAVLYSDKRPLKEAEEINAR-- 117
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + A+ P + KL++ + ++ + G D +++ LTG
Sbjct: 118 HGADNLWSALENPXTAASILPKLVFWRASFPQAFGRLRH--VVLGAKD-YVVLRLTG--- 171
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241
H TD +NAS T L K W L G ++ P+++ E +G +
Sbjct: 172 --RHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLXPRLLEPGEQVGGVSALAARQT 229
Query: 242 GWPITGIPISGCLGDQHAAMLGQACKKGE-AKSTYGTGAFILMNT-----GEEVVKSKHG 295
G+ ++G P+ LGD AA LG E A GT ++ T G+ V +
Sbjct: 230 GF-VSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDXPVGTIFR 288
Query: 296 LLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLG----------IISSASEIEELA 345
L +A K AP + AG +QW +G +A+E++
Sbjct: 289 LAGIIAGKTLQVAP--------VLNAGNILQWALTLVGHRPGEDCAEYFHXAAAEVQ--- 337
Query: 346 LQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK--DV 403
V G+ FVP + P RG +G+T T++A I AVLE ++
Sbjct: 338 -GVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAE 396
Query: 404 LDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADL 445
L +K + K V A+SE LR +LL++ A L
Sbjct: 397 LLGXEKVGLLKVVGGGARSEAWLRXIADNLNVSLLVKPDAHL 438
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 154/391 (39%), Gaps = 51/391 (13%)
Query: 95 LWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMM 154
LW+ ++ P A++ + + E + GK +++AVG ++ K+ W+
Sbjct: 92 LWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVA 151
Query: 155 ENVDAVKEAIKKGDALFGTIDTWLIWNLTG------GVNGGLHV--TDVSNASRTMLMNL 206
EN E +KK A+ D WL W + G G + L TD S+AS T+ +
Sbjct: 152 EN---EPENVKKIAAICLPHD-WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDA 207
Query: 207 KTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITGIPI------------SGCL 254
+ ++ + + + AE S++E I P P+ GCL
Sbjct: 208 ASNEYRRDLIAXVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCL 267
Query: 255 -----GDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAP 309
GD A LG G+ + GT + E G +S A G P
Sbjct: 268 LAPGGGDNAXASLGLGXAVGDVSISLGTSG-VAAAISENPTYDLTGAVSGFADCTGHYLP 326
Query: 310 TNYALEGS-IAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNGLFAPW 367
+ GS I AG R +LG+ E+ +LA G+ VP F+G P
Sbjct: 327 LACTINGSRILDAG------RAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTP- 377
Query: 368 WRDDARGVCIGIT-RFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
R +A G T T++ ++ARA +E + +D L+ ++ A +L
Sbjct: 378 NRPNATATFSGXTLANTTRENLARAFVEGLLCSQRDCLELIRS--------LGASITRIL 429
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIE 457
+ GGA + + + +LG V RPA E
Sbjct: 430 LIGGGAK-SEAIRTLAPSILGXDVTRPATDE 459
>pdb|2CGJ|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose And Adp.
pdb|2CGK|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2CGK|B Chain B, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2UYT|A Chain A, Structure Of L-Rhamnulose Kinase In Complex With Adp And
Beta-L-Rhamnulose
Length = 489
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 100/468 (21%), Positives = 182/468 (38%), Gaps = 80/468 (17%)
Query: 11 AIDQGTTSTRFII--YDHQARPIGSHQVE-FTQ-FYPEAGWVEHEPMEILESVRVCMAKA 66
A+D G +S R ++ Y+ + R + ++ F + + G+V + + ++R+
Sbjct: 8 AVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRL----G 63
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKS---TGCPLYNAIVWMDARTSSVCRKLE 123
L+K A G +DS IG+ VL + G P + + D+RT+ + + +
Sbjct: 64 LNKVCAAGIAIDS----IGIDTWGVDFVLLDQQGQRVGLP----VAYRDSRTNGLMAQAQ 115
Query: 124 KELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLT 183
++L GK + G+ + + +L + E + I AL + + + LT
Sbjct: 116 QQL--GKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAH--ALL--MPDYFSYRLT 169
Query: 184 GGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK--IGK 241
G +N + +NA+ T L+N+ + DWD+ L G + +IG +
Sbjct: 170 GKMNW-----EYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQ 224
Query: 242 GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLA 301
G IP+ A+ + + G + +G + LM G S
Sbjct: 225 G---NEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLM-----------GFESQTP 270
Query: 302 FKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI-----ISSASEIEELALQVNSTGGVYF 356
F N EG A + L++ +G+ + +I +L + +T
Sbjct: 271 FTNDTALAANITNEGG---AEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQA--- 324
Query: 357 VPAFNGLFAPWWRDDA-----------RGVCIGITRFT--SKAHIARAVLESMCFQVKDV 403
+PA + P DD + C + + S A +AR + +S+ DV
Sbjct: 325 LPACRFIINP--NDDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADV 382
Query: 404 LDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVI 451
L + A +G +D L + GG N LL Q+ AD G VI
Sbjct: 383 LHEL---AQLRG--EDFSQ---LHIVGGGCQNTLLNQLCADACGIRVI 422
>pdb|2CGL|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose, Adp And A Modeled Atp
Gamma Phosphate
Length = 489
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 11 AIDQGTTSTRFII--YDHQARPIGSHQVE-FTQ-FYPEAGWVEHEPMEILESVRVCMAKA 66
A+D G +S R + Y+ + R + ++ F + + G+V + + ++R+
Sbjct: 8 AVDLGASSGRVXLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRL----G 63
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKS---TGCPLYNAIVWMDARTSSVCRKLE 123
L+K A G +DS IG+ VL + G P + + D+RT+ + + +
Sbjct: 64 LNKVCAAGIAIDS----IGIDTWGVDFVLLDQQGQRVGLP----VAYRDSRTNGLXAQAQ 115
Query: 124 KELPGGKTHFLEAVG---LPISTYFSAVKLLWMM-ENVDAVKEAIKKGDALFGTIDTWLI 179
++L GK + G LP +T + L E + + A+ D +
Sbjct: 116 QQL--GKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLXPD--------YFS 165
Query: 180 WNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTL 216
+ LTG N + +NA+ T L+N+ + DWD+ L
Sbjct: 166 YRLTGKXNW-----EYTNATTTQLVNINSDDWDESLL 197
>pdb|2RF8|A Chain A, Crystal Structure Of The Mutant C2a Conjugated Bile Acid
Hydrolase From Clostridium Perfringens
pdb|2RF8|B Chain B, Crystal Structure Of The Mutant C2a Conjugated Bile Acid
Hydrolase From Clostridium Perfringens
Length = 329
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 37/184 (20%)
Query: 72 ADGHNVDSGLKAIGLTNQRETTVLWSKS-----TGCPLYNAIVWMDARTSSVCRKLEKEL 126
ADG N + GL GL V +SK T P+YN ++W+ A SSV ++++ L
Sbjct: 68 ADGMN-EKGLGCAGL--NFPVYVSYSKEDIEGKTNIPVYNFLLWVLANFSSV-EEVKEAL 123
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
V +PIS L WM+ ++ +++ D + GV
Sbjct: 124 KNANI-----VDIPISENIPNTTLHWMISDITGKSIVVEQTKEKLNVFDNNI------GV 172
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTL-ETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
L N T DW L + +G+ +P+ + + +G+G +
Sbjct: 173 ----------------LTNSPTFDWHVANLNQYVGLRYNQVPEFKLGDQSLTALGQGTGL 216
Query: 246 TGIP 249
G+P
Sbjct: 217 VGLP 220
>pdb|2BJF|A Chain A, Crystal Structure Of Conjugated Bile Acid Hydrolase From
Clostridium Perfringens In Complex With Reaction
Products Taurine And Deoxycholate
pdb|2BJG|A Chain A, Crystal Structure Of Conjugated Bile Acid Hydrolase From
Clostridium Perfringens In Complex With Reaction
Products Taurine And Deoxycholate
pdb|2BJG|B Chain B, Crystal Structure Of Conjugated Bile Acid Hydrolase From
Clostridium Perfringens In Complex With Reaction
Products Taurine And Deoxycholate
Length = 329
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 37/184 (20%)
Query: 72 ADGHNVDSGLKAIGLTNQRETTVLWSKS-----TGCPLYNAIVWMDARTSSVCRKLEKEL 126
ADG N + GL GL V +SK T P+YN ++W+ A SSV ++++ L
Sbjct: 68 ADGMN-EKGLGCAGL--NFPVYVSYSKEDIEGKTNIPVYNFLLWVLANFSSV-EEVKEAL 123
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
V +PIS L WM+ ++ +++ D + GV
Sbjct: 124 KNANI-----VDIPISENIPNTTLHWMISDITGKSIVVEQTKEKLNVFDNNI------GV 172
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTL-ETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
L N T DW L + +G+ +P+ + + +G+G +
Sbjct: 173 ----------------LTNSPTFDWHVANLNQYVGLRYNQVPEFKLGDQSLTALGQGTGL 216
Query: 246 TGIP 249
G+P
Sbjct: 217 VGLP 220
>pdb|2RG2|A Chain A, Crystal Structure Of Variant R18l Of Conjugated Bile Acid
Hydrolase From Clostridium Perfringens
Length = 328
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 37/184 (20%)
Query: 72 ADGHNVDSGLKAIGLTNQRETTVLWSKS-----TGCPLYNAIVWMDARTSSVCRKLEKEL 126
ADG N + GL GL V +SK T P+YN ++W+ A SSV ++++ L
Sbjct: 67 ADGMN-EKGLGCAGL--NFPVYVSYSKEDIEGKTNIPVYNFLLWVLANFSSV-EEVKEAL 122
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
V +PIS L WM+ ++ +++ D + GV
Sbjct: 123 KNANI-----VDIPISENIPNTTLHWMISDITGKSIVVEQTKEKLNVFDNNI------GV 171
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTL-ETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
L N T DW L + +G+ +P+ + + +G+G +
Sbjct: 172 ----------------LTNSPTFDWHVANLNQYVGLRYNQVPEFKLGDQSLTALGQGTGL 215
Query: 246 TGIP 249
G+P
Sbjct: 216 VGLP 219
>pdb|2RLC|A Chain A, Crystal Structure Of The Conjugated Bile Acid Hydrolase
From Clostridium Perfringens In Complex With Reaction
Products Glycine And Cholate
Length = 328
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 37/184 (20%)
Query: 72 ADGHNVDSGLKAIGLTNQRETTVLWSKS-----TGCPLYNAIVWMDARTSSVCRKLEKEL 126
ADG N + GL GL V +SK T P+YN ++W+ A SSV ++++ L
Sbjct: 67 ADGXN-EKGLGCAGL--NFPVYVSYSKEDIEGKTNIPVYNFLLWVLANFSSV-EEVKEAL 122
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
V +PIS L W + ++ +++ D + GV
Sbjct: 123 KNANI-----VDIPISENIPNTTLHWXISDITGKSIVVEQTKEKLNVFDNNI------GV 171
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTL-ETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
L N T DW L + +G+ +P+ + + +G+G +
Sbjct: 172 ----------------LTNSPTFDWHVANLNQYVGLRYNQVPEFKLGDQSLTALGQGTGL 215
Query: 246 TGIP 249
G+P
Sbjct: 216 VGLP 219
>pdb|3CQI|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Sulfate
pdb|3CQI|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Sulfate
pdb|3CQJ|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Zn2+
pdb|3CQJ|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Zn2+
pdb|3CQK|A Chain A, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
Ulae (form B) Complex With Zn2+ And Sulfate
pdb|3CQK|B Chain B, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
Ulae (form B) Complex With Zn2+ And Sulfate
Length = 295
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 87 TNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP-GGKTHFLEAVGLPI 141
T++R + + WS+ L NAIV R S+C + P G + + A GL I
Sbjct: 54 TDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEI 109
>pdb|3UV1|A Chain A, Crystal Structure A Major Allergen From Dust Mite
pdb|3UV1|B Chain B, Crystal Structure A Major Allergen From Dust Mite
Length = 196
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 262 LGQACKKGEAKSTYGTG---AFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSI 318
L Q ++G+A G A +L+ +++V ++ L A+KLG PT + +
Sbjct: 64 LKQXKRQGDANVKGEEGIVKAHLLIGVHDDIVSXEYDL----AYKLGDLHPTTHVISDIQ 119
Query: 319 AIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
A + D I ++ E+ + A VN GG+ + G+ +
Sbjct: 120 DFVVALSLEIPDEGNITXTSFEVRQFANVVNHIGGLSILDPIFGVLS 166
>pdb|3CQH|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae From The Anaerobic L-Ascorbate Utilization Pathway
Of Escherichia Coli
pdb|3CQH|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae From The Anaerobic L-Ascorbate Utilization Pathway
Of Escherichia Coli
Length = 295
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 83 AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP-GGKTHFLEAVGLPI 141
++ T++R + + WS+ L NAIV R S C + P G + + A GL I
Sbjct: 50 SVDETDERLSRLDWSREQRLALVNAIVETGVRVPSXCLSAHRRFPLGSEDDAVRAQGLEI 109
>pdb|3KN1|A Chain A, Crystal Structure Of Golgi Phosphoprotein 3 N-Term
Truncation Variant
Length = 249
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 398 FQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+Q+++V + + K+ VEKGV+ K FLL
Sbjct: 119 YQLRNVRERLAKNLVEKGVLTTEKQNFLL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,960,534
Number of Sequences: 62578
Number of extensions: 611984
Number of successful extensions: 1534
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 35
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)