Query 009868
Match_columns 523
No_of_seqs 257 out of 1700
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 18:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 100.0 3E-105 7E-110 797.6 44.3 493 6-519 4-497 (499)
2 PLN02295 glycerol kinase 100.0 4E-98 9E-103 802.4 53.7 503 8-523 1-512 (512)
3 PRK00047 glpK glycerol kinase; 100.0 1.4E-97 3E-102 796.7 53.0 492 5-518 3-497 (498)
4 PTZ00294 glycerol kinase-like 100.0 2.4E-97 5E-102 795.5 53.8 496 7-520 2-503 (504)
5 TIGR01311 glycerol_kin glycero 100.0 4.6E-95 1E-99 776.4 53.3 492 7-518 1-493 (493)
6 TIGR01314 gntK_FGGY gluconate 100.0 3.7E-94 8.1E-99 771.5 48.5 477 8-518 1-496 (505)
7 PRK15027 xylulokinase; Provisi 100.0 9.8E-94 2.1E-98 764.4 47.3 472 8-518 1-482 (484)
8 PRK10939 autoinducer-2 (AI-2) 100.0 1.1E-90 2.4E-95 746.6 46.2 481 6-519 2-506 (520)
9 TIGR01315 5C_CHO_kinase FGGY-f 100.0 6.4E-91 1.4E-95 750.3 44.2 475 8-518 1-540 (541)
10 PRK04123 ribulokinase; Provisi 100.0 1.2E-89 2.5E-94 743.7 47.7 485 6-515 2-533 (548)
11 TIGR01234 L-ribulokinase L-rib 100.0 2.8E-89 6.1E-94 737.9 47.8 481 8-518 2-533 (536)
12 TIGR01312 XylB D-xylulose kina 100.0 1.2E-88 2.7E-93 727.1 48.3 471 10-512 1-480 (481)
13 PRK10331 L-fuculokinase; Provi 100.0 3.2E-88 7E-93 719.4 43.5 453 7-503 2-468 (470)
14 COG1070 XylB Sugar (pentulose 100.0 1.1E-86 2.4E-91 710.6 45.7 483 4-518 1-497 (502)
15 TIGR02628 fuculo_kin_coli L-fu 100.0 1.2E-85 2.5E-90 698.5 43.2 449 8-495 2-465 (465)
16 PLN02669 xylulokinase 100.0 2.7E-80 5.9E-85 666.0 45.9 436 4-471 5-494 (556)
17 KOG2517 Ribulose kinase and re 100.0 5.1E-80 1.1E-84 631.6 38.9 501 6-521 5-512 (516)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 1.3E-77 2.9E-82 635.3 34.5 428 10-480 1-444 (454)
19 PRK10640 rhaB rhamnulokinase; 100.0 6.3E-77 1.4E-81 630.7 35.2 447 22-514 3-466 (471)
20 COG1069 AraB Ribulose kinase [ 100.0 8.3E-73 1.8E-77 572.7 36.3 477 5-516 1-526 (544)
21 PF00370 FGGY_N: FGGY family o 100.0 7.6E-52 1.6E-56 404.0 22.6 239 8-263 1-245 (245)
22 KOG2531 Sugar (pentulose and h 100.0 1.1E-46 2.5E-51 370.8 34.8 479 5-514 7-543 (545)
23 PF02782 FGGY_C: FGGY family o 100.0 6.1E-34 1.3E-38 268.8 19.4 189 271-471 1-198 (198)
24 TIGR00241 CoA_E_activ CoA-subs 99.4 3.9E-12 8.4E-17 124.2 17.9 121 321-466 126-248 (248)
25 TIGR02259 benz_CoA_red_A benzo 98.8 2.5E-07 5.4E-12 93.1 15.8 132 313-467 295-432 (432)
26 PRK13317 pantothenate kinase; 98.2 3.5E-05 7.6E-10 76.1 15.9 138 321-468 126-273 (277)
27 COG1940 NagC Transcriptional r 97.9 6.1E-05 1.3E-09 76.2 11.2 92 3-112 2-94 (314)
28 PRK13311 N-acetyl-D-glucosamin 97.9 6.3E-05 1.4E-09 73.8 10.4 84 8-112 1-85 (256)
29 PRK09698 D-allose kinase; Prov 97.9 8.6E-05 1.9E-09 74.7 11.1 85 5-109 2-87 (302)
30 TIGR03192 benz_CoA_bzdQ benzoy 97.9 0.00018 3.9E-09 70.8 12.2 128 319-469 159-288 (293)
31 PRK09557 fructokinase; Reviewe 97.8 8.9E-05 1.9E-09 74.6 10.1 83 8-111 1-83 (301)
32 PRK13310 N-acetyl-D-glucosamin 97.8 0.0001 2.2E-09 74.3 9.9 85 8-113 1-86 (303)
33 TIGR00744 ROK_glcA_fam ROK fam 97.7 0.00016 3.4E-09 73.4 10.1 86 10-113 1-87 (318)
34 COG1924 Activator of 2-hydroxy 97.7 0.00012 2.7E-09 73.1 8.8 126 314-469 257-390 (396)
35 PRK09472 ftsA cell division pr 97.7 0.024 5.2E-07 59.8 26.1 64 385-453 293-359 (420)
36 TIGR03286 methan_mark_15 putat 97.7 0.00036 7.8E-09 71.4 11.1 129 317-467 272-401 (404)
37 PF00480 ROK: ROK family; Int 97.6 0.00025 5.4E-09 65.4 8.8 82 11-115 1-83 (179)
38 TIGR00555 panK_eukar pantothen 97.5 0.0051 1.1E-07 60.5 17.0 135 321-465 131-278 (279)
39 TIGR02261 benz_CoA_red_D benzo 97.5 0.0012 2.6E-08 64.1 11.8 126 319-467 131-262 (262)
40 PRK05082 N-acetylmannosamine k 97.3 0.0011 2.4E-08 66.3 9.3 67 9-98 3-69 (291)
41 TIGR03286 methan_mark_15 putat 97.1 0.0015 3.2E-08 67.0 8.4 71 5-94 142-212 (404)
42 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0016 3.5E-08 64.1 8.4 66 7-90 32-97 (293)
43 smart00732 YqgFc Likely ribonu 97.1 0.0016 3.5E-08 53.6 7.2 31 8-38 2-32 (99)
44 PF05378 Hydant_A_N: Hydantoin 97.1 0.00064 1.4E-08 62.5 4.4 78 10-104 2-79 (176)
45 COG2971 Predicted N-acetylgluc 97.1 0.0018 4E-08 63.4 7.7 69 5-84 3-72 (301)
46 CHL00094 dnaK heat shock prote 97.0 0.0013 2.7E-08 73.0 7.3 54 423-476 329-383 (621)
47 TIGR02261 benz_CoA_red_D benzo 97.0 0.0026 5.6E-08 61.8 8.0 71 8-92 2-73 (262)
48 PRK00292 glk glucokinase; Prov 96.8 0.0028 6.1E-08 64.2 7.0 79 7-112 2-81 (316)
49 PRK13410 molecular chaperone D 96.8 0.0044 9.5E-08 69.0 9.0 53 423-475 329-382 (668)
50 PRK13321 pantothenate kinase; 96.7 0.0038 8.3E-08 61.2 7.3 70 382-468 183-252 (256)
51 PLN02920 pantothenate kinase 1 96.7 0.084 1.8E-06 54.0 16.9 140 317-466 192-349 (398)
52 PF01869 BcrAD_BadFG: BadF/Bad 96.7 0.0025 5.3E-08 63.1 5.9 69 10-88 1-69 (271)
53 PRK12408 glucokinase; Provisio 96.7 0.0024 5.3E-08 65.2 6.0 77 7-111 16-98 (336)
54 PRK13318 pantothenate kinase; 96.7 0.0053 1.2E-07 60.3 7.9 70 382-468 183-252 (258)
55 PRK03011 butyrate kinase; Prov 96.7 0.4 8.6E-06 49.3 21.6 70 388-465 269-343 (358)
56 COG1924 Activator of 2-hydroxy 96.6 0.0077 1.7E-07 60.5 7.9 71 5-94 133-203 (396)
57 TIGR02529 EutJ ethanolamine ut 96.5 0.0039 8.4E-08 60.5 5.4 65 387-465 173-238 (239)
58 PF14574 DUF4445: Domain of un 96.5 0.0059 1.3E-07 63.4 6.9 80 8-88 2-91 (412)
59 PTZ00186 heat shock 70 kDa pre 96.4 0.0087 1.9E-07 66.5 8.1 51 423-473 354-405 (657)
60 PRK15080 ethanolamine utilizat 96.4 0.0077 1.7E-07 59.4 6.7 67 386-466 199-266 (267)
61 PRK14101 bifunctional glucokin 96.3 0.0063 1.4E-07 67.7 6.6 78 7-111 18-95 (638)
62 PRK00290 dnaK molecular chaper 96.2 0.016 3.5E-07 64.4 8.8 51 423-473 327-378 (627)
63 TIGR02350 prok_dnaK chaperone 96.1 0.017 3.7E-07 63.8 8.5 51 423-473 325-376 (595)
64 PF00012 HSP70: Hsp70 protein; 96.1 0.014 3.1E-07 64.5 7.7 51 423-473 329-380 (602)
65 COG0443 DnaK Molecular chapero 96.1 0.2 4.3E-06 54.9 16.3 88 383-475 271-363 (579)
66 PRK13928 rod shape-determining 96.0 0.013 2.8E-07 59.9 6.2 76 387-469 246-323 (336)
67 PRK01433 hscA chaperone protei 95.9 0.02 4.3E-07 63.0 7.8 50 423-472 309-359 (595)
68 PRK05183 hscA chaperone protei 95.9 0.026 5.6E-07 62.5 8.6 51 423-473 329-380 (616)
69 COG0533 QRI7 Metal-dependent p 95.9 0.13 2.9E-06 51.5 12.6 133 320-471 159-312 (342)
70 TIGR01991 HscA Fe-S protein as 95.8 0.034 7.3E-07 61.4 8.9 50 423-472 313-363 (599)
71 PRK11678 putative chaperone; P 95.7 0.054 1.2E-06 57.5 9.5 81 380-469 366-447 (450)
72 PLN03184 chloroplast Hsp70; Pr 95.7 0.038 8.2E-07 61.8 8.7 51 423-473 366-417 (673)
73 PTZ00400 DnaK-type molecular c 95.5 0.029 6.2E-07 62.7 7.1 51 423-473 368-419 (663)
74 PRK13411 molecular chaperone D 95.3 0.054 1.2E-06 60.4 8.2 51 423-473 328-380 (653)
75 PRK13927 rod shape-determining 95.2 0.033 7.1E-07 56.9 5.9 45 425-469 279-324 (334)
76 PF03630 Fumble: Fumble ; Int 95.2 0.13 2.9E-06 52.2 10.1 140 317-466 183-339 (341)
77 PF03702 UPF0075: Uncharacteri 95.1 0.19 4.2E-06 51.5 11.0 84 384-479 258-348 (364)
78 PTZ00009 heat shock 70 kDa pro 95.0 0.051 1.1E-06 60.7 7.0 50 423-472 333-384 (653)
79 TIGR00904 mreB cell shape dete 94.9 0.046 1E-06 55.8 6.0 45 425-469 282-327 (333)
80 PRK13930 rod shape-determining 94.9 0.04 8.7E-07 56.2 5.5 46 424-469 281-328 (335)
81 PF00349 Hexokinase_1: Hexokin 94.7 0.1 2.2E-06 49.3 7.2 80 8-98 64-145 (206)
82 PRK09585 anmK anhydro-N-acetyl 94.7 0.12 2.6E-06 53.0 8.2 77 383-471 259-340 (365)
83 PLN02902 pantothenate kinase 94.6 1.3 2.7E-05 50.0 16.3 141 317-467 241-399 (876)
84 TIGR02707 butyr_kinase butyrat 94.6 0.093 2E-06 53.8 7.1 60 388-455 267-328 (351)
85 smart00842 FtsA Cell division 94.5 0.29 6.4E-06 45.4 9.7 72 9-88 1-76 (187)
86 KOG0103 Molecular chaperones H 94.2 0.097 2.1E-06 56.5 6.5 77 386-471 306-383 (727)
87 TIGR00143 hypF [NiFe] hydrogen 94.2 0.074 1.6E-06 59.5 5.9 77 382-468 628-711 (711)
88 PRK09604 UGMP family protein; 93.8 0.25 5.3E-06 50.4 8.5 81 384-474 226-313 (332)
89 PRK14878 UGMP family protein; 93.8 0.28 6.1E-06 49.8 8.7 73 383-465 212-287 (323)
90 PF02543 CmcH_NodU: Carbamoylt 93.7 0.33 7.2E-06 50.0 9.2 82 383-473 133-217 (360)
91 PRK13929 rod-share determining 93.4 0.17 3.8E-06 51.6 6.6 44 423-466 278-323 (335)
92 PRK15080 ethanolamine utilizat 93.2 0.59 1.3E-05 46.1 9.7 58 5-65 22-79 (267)
93 TIGR00749 glk glucokinase, pro 93.1 0.13 2.9E-06 52.0 5.0 24 10-33 1-24 (316)
94 PF11104 PilM_2: Type IV pilus 93.0 0.23 4.9E-06 50.8 6.7 62 385-454 244-306 (340)
95 PF01869 BcrAD_BadFG: BadF/Bad 92.8 0.42 9.2E-06 47.1 8.1 74 386-467 192-271 (271)
96 KOG0100 Molecular chaperones G 92.6 0.29 6.4E-06 49.6 6.5 51 423-473 363-415 (663)
97 TIGR01174 ftsA cell division p 92.6 0.79 1.7E-05 47.5 10.1 33 423-455 314-347 (371)
98 KOG1794 N-Acetylglucosamine ki 92.4 0.72 1.6E-05 45.0 8.6 73 6-87 2-74 (336)
99 PTZ00288 glucokinase 1; Provis 91.9 0.99 2.1E-05 47.2 9.8 57 6-69 25-84 (405)
100 PF13941 MutL: MutL protein 91.7 0.61 1.3E-05 49.2 8.0 51 9-69 2-55 (457)
101 PRK13331 pantothenate kinase; 91.3 0.69 1.5E-05 45.0 7.3 68 382-467 173-247 (251)
102 PTZ00297 pantothenate kinase; 91.1 7.4 0.00016 47.4 17.1 74 383-466 1362-1443(1452)
103 TIGR01175 pilM type IV pilus a 91.1 0.43 9.3E-06 48.9 6.1 62 386-455 253-315 (348)
104 PLN02914 hexokinase 91.0 0.83 1.8E-05 48.8 8.2 95 8-111 96-194 (490)
105 TIGR03723 bact_gcp putative gl 91.0 1.1 2.4E-05 45.3 8.8 62 384-455 231-295 (314)
106 PRK13324 pantothenate kinase; 90.7 0.89 1.9E-05 44.5 7.6 70 382-469 183-252 (258)
107 PF06723 MreB_Mbl: MreB/Mbl pr 90.7 0.28 6.2E-06 49.6 4.2 43 424-466 275-318 (326)
108 PTZ00340 O-sialoglycoprotein e 90.6 1.4 3E-05 44.9 9.1 75 385-470 236-313 (345)
109 PRK13317 pantothenate kinase; 90.6 0.28 6.1E-06 48.5 4.0 27 7-33 2-28 (277)
110 TIGR03722 arch_KAE1 universal 90.4 1.1 2.5E-05 45.4 8.3 62 384-455 214-278 (322)
111 PRK09605 bifunctional UGMP fam 90.0 1.2 2.7E-05 48.5 8.8 76 384-469 217-299 (535)
112 COG2377 Predicted molecular ch 89.6 1.4 3.1E-05 44.6 8.0 57 383-451 263-320 (371)
113 COG2192 Predicted carbamoyl tr 89.4 0.88 1.9E-05 48.4 6.7 77 384-473 260-339 (555)
114 COG0849 ftsA Cell division ATP 89.2 2.7 6E-05 43.9 10.1 61 386-455 293-353 (418)
115 PLN02405 hexokinase 89.1 1.4 3.1E-05 47.1 8.1 59 8-69 96-157 (497)
116 TIGR02529 EutJ ethanolamine ut 88.8 1.7 3.7E-05 42.0 7.9 52 11-65 1-52 (239)
117 PLN02666 5-oxoprolinase 88.7 0.75 1.6E-05 54.7 6.2 76 383-466 454-531 (1275)
118 PLN02362 hexokinase 88.1 1.7 3.6E-05 46.8 7.9 59 8-69 96-157 (509)
119 TIGR00329 gcp_kae1 metallohydr 88.0 1.3 2.7E-05 44.7 6.6 61 384-454 230-293 (305)
120 PLN02596 hexokinase-like 87.8 1.8 3.8E-05 46.3 7.8 59 8-69 97-158 (490)
121 COG3426 Butyrate kinase [Energ 87.7 1.9 4E-05 42.1 7.0 63 387-457 269-334 (358)
122 KOG0101 Molecular chaperones H 87.6 1.1 2.4E-05 48.7 6.2 53 423-475 335-389 (620)
123 PRK13326 pantothenate kinase; 87.4 2 4.3E-05 42.2 7.4 69 382-467 185-253 (262)
124 PTZ00107 hexokinase; Provision 87.3 2.6 5.6E-05 44.9 8.6 62 8-69 75-143 (464)
125 TIGR03123 one_C_unchar_1 proba 87.2 0.74 1.6E-05 46.3 4.3 31 10-40 1-31 (318)
126 TIGR00555 panK_eukar pantothen 86.1 2.5 5.5E-05 41.7 7.3 25 9-33 2-26 (279)
127 TIGR01174 ftsA cell division p 85.8 1.2 2.6E-05 46.2 5.2 72 9-88 2-77 (371)
128 PRK13320 pantothenate kinase; 85.6 2.9 6.2E-05 40.6 7.4 68 382-467 173-240 (244)
129 PTZ00340 O-sialoglycoprotein e 85.1 4.2 9.2E-05 41.5 8.6 75 8-88 2-78 (345)
130 COG0145 HyuA N-methylhydantoin 84.7 1.6 3.5E-05 48.6 5.8 77 7-102 2-78 (674)
131 TIGR00671 baf pantothenate kin 84.4 3.2 6.9E-05 40.3 7.1 45 382-435 175-219 (243)
132 KOG1794 N-Acetylglucosamine ki 84.3 11 0.00023 37.2 10.3 80 386-472 234-319 (336)
133 KOG2201 Pantothenate kinase Pa 84.0 9.4 0.0002 38.1 9.9 56 382-447 274-330 (371)
134 COG4972 PilM Tfp pilus assembl 83.8 2.8 6.2E-05 41.8 6.4 64 385-455 257-320 (354)
135 PRK00976 hypothetical protein; 83.6 5.4 0.00012 40.2 8.4 71 386-471 241-313 (326)
136 PF07318 DUF1464: Protein of u 83.6 2.1 4.6E-05 43.2 5.6 80 388-480 239-327 (343)
137 PF11104 PilM_2: Type IV pilus 83.5 3.4 7.4E-05 42.2 7.3 54 11-65 1-57 (340)
138 COG0068 HypF Hydrogenase matur 83.3 4.5 9.7E-05 44.5 8.1 77 382-468 663-746 (750)
139 KOG0102 Molecular chaperones m 83.2 1.2 2.5E-05 47.2 3.6 54 423-476 354-408 (640)
140 PRK09604 UGMP family protein; 83.2 5.8 0.00013 40.4 8.7 77 8-88 2-80 (332)
141 COG4820 EutJ Ethanolamine util 83.1 3.4 7.5E-05 38.3 6.2 63 390-466 208-271 (277)
142 COG3734 DgoK 2-keto-3-deoxy-ga 82.7 1.8 3.9E-05 42.2 4.5 32 5-36 3-34 (306)
143 COG5026 Hexokinase [Carbohydra 82.5 2 4.3E-05 44.4 4.9 60 7-69 75-136 (466)
144 PRK10854 exopolyphosphatase; P 82.0 6.1 0.00013 42.9 8.8 80 5-90 9-93 (513)
145 PRK11031 guanosine pentaphosph 81.6 6.6 0.00014 42.4 8.9 83 1-90 1-88 (496)
146 TIGR03706 exo_poly_only exopol 81.5 4.8 0.0001 40.3 7.4 76 9-90 2-82 (300)
147 TIGR03281 methan_mark_12 putat 80.4 4.3 9.4E-05 40.2 6.2 69 387-469 240-311 (326)
148 TIGR01175 pilM type IV pilus a 80.3 4.9 0.00011 41.1 7.1 73 7-89 3-78 (348)
149 PRK13310 N-acetyl-D-glucosamin 79.9 67 0.0015 31.9 16.7 46 423-468 246-301 (303)
150 PRK09605 bifunctional UGMP fam 78.4 7.3 0.00016 42.5 8.1 75 8-88 2-77 (535)
151 KOG1369 Hexokinase [Carbohydra 78.4 12 0.00026 39.7 9.1 96 8-115 87-184 (474)
152 PF07318 DUF1464: Protein of u 78.2 2 4.4E-05 43.4 3.3 42 11-59 1-42 (343)
153 COG4020 Uncharacterized protei 77.3 11 0.00024 36.2 7.6 66 6-91 2-68 (332)
154 TIGR00329 gcp_kae1 metallohydr 76.5 9.7 0.00021 38.3 7.8 75 10-88 1-77 (305)
155 KOG2708 Predicted metalloprote 76.4 18 0.00039 34.3 8.6 109 320-447 156-279 (336)
156 COG5146 PanK Pantothenate kina 74.7 27 0.00058 33.4 9.4 138 318-466 173-329 (342)
157 PRK00039 ruvC Holliday junctio 73.5 21 0.00045 32.4 8.3 55 7-69 2-59 (164)
158 TIGR03723 bact_gcp putative gl 71.8 17 0.00037 36.7 8.2 76 9-88 1-78 (314)
159 KOG0104 Molecular chaperones G 71.7 6.5 0.00014 43.4 5.2 50 423-472 365-416 (902)
160 PF03727 Hexokinase_2: Hexokin 71.1 7.5 0.00016 37.7 5.3 46 426-471 189-242 (243)
161 COG4972 PilM Tfp pilus assembl 70.8 13 0.00028 37.3 6.7 64 8-79 11-77 (354)
162 TIGR03722 arch_KAE1 universal 70.7 15 0.00031 37.3 7.5 73 10-88 1-74 (322)
163 COG1548 Predicted transcriptio 70.3 8.1 0.00018 37.3 5.0 63 393-468 259-328 (330)
164 PF14450 FtsA: Cell division p 70.0 6.4 0.00014 33.5 4.0 56 9-66 1-59 (120)
165 COG1521 Pantothenate kinase ty 69.1 10 0.00022 36.9 5.6 69 382-468 181-249 (251)
166 PF02075 RuvC: Crossover junct 67.6 20 0.00043 31.9 6.8 53 9-69 1-56 (149)
167 COG0837 Glk Glucokinase [Carbo 67.2 15 0.00032 36.5 6.2 85 382-468 216-318 (320)
168 PRK09557 fructokinase; Reviewe 66.0 25 0.00055 35.0 8.1 69 389-467 221-299 (301)
169 TIGR03725 bact_YeaZ universal 65.9 22 0.00047 33.3 7.1 62 9-88 1-62 (202)
170 COG0443 DnaK Molecular chapero 65.8 6.4 0.00014 43.3 3.9 22 7-28 5-26 (579)
171 KOG1369 Hexokinase [Carbohydra 65.5 17 0.00036 38.6 6.7 47 426-472 416-469 (474)
172 PRK00180 acetate kinase A/prop 65.4 21 0.00046 37.2 7.4 50 390-447 299-349 (402)
173 PF02685 Glucokinase: Glucokin 64.9 12 0.00026 37.8 5.4 45 424-468 256-314 (316)
174 COG0248 GppA Exopolyphosphatas 64.6 9.2 0.0002 41.0 4.7 78 7-90 3-85 (492)
175 PTZ00107 hexokinase; Provision 64.5 26 0.00057 37.4 8.1 48 424-471 406-461 (464)
176 PF01968 Hydantoinase_A: Hydan 64.1 11 0.00023 37.7 4.9 72 384-465 208-283 (290)
177 TIGR00016 ackA acetate kinase. 63.5 24 0.00052 36.7 7.3 50 390-447 303-353 (404)
178 PRK00290 dnaK molecular chaper 62.3 6.1 0.00013 44.0 3.0 19 8-26 3-21 (627)
179 TIGR01319 glmL_fam conserved h 61.4 23 0.00051 37.4 6.8 48 12-69 1-50 (463)
180 PF01548 DEDD_Tnp_IS110: Trans 61.4 17 0.00037 31.6 5.2 30 9-38 1-30 (144)
181 COG1077 MreB Actin-like ATPase 61.3 9.1 0.0002 38.3 3.6 34 423-456 283-317 (342)
182 COG3894 Uncharacterized metal- 61.1 11 0.00024 39.8 4.3 32 5-36 162-194 (614)
183 PF14639 YqgF: Holliday-juncti 60.7 22 0.00048 31.7 5.7 30 7-36 5-38 (150)
184 PF04312 DUF460: Protein of un 60.6 29 0.00063 30.2 6.1 32 5-37 30-61 (138)
185 COG1214 Inactive homolog of me 60.1 23 0.0005 33.7 6.1 64 8-88 2-66 (220)
186 PF00871 Acetate_kinase: Aceto 59.2 27 0.00058 36.4 6.8 56 389-452 295-352 (388)
187 PRK14878 UGMP family protein; 58.3 35 0.00076 34.6 7.5 72 10-88 1-73 (323)
188 PRK05082 N-acetylmannosamine k 57.5 46 0.00099 32.9 8.1 69 389-467 210-286 (291)
189 cd00529 RuvC_resolvase Hollida 57.4 57 0.0012 29.1 7.9 53 9-69 2-57 (154)
190 PRK07058 acetate kinase; Provi 56.8 31 0.00068 35.8 6.7 50 389-447 294-344 (396)
191 KOG3530 FERM domain protein EH 56.7 22 0.00047 38.4 5.6 79 428-511 98-176 (616)
192 CHL00094 dnaK heat shock prote 56.5 8.8 0.00019 42.7 3.0 22 8-30 3-24 (621)
193 PRK13410 molecular chaperone D 56.4 9.7 0.00021 42.8 3.3 22 8-30 3-24 (668)
194 PF05035 DGOK: 2-keto-3-deoxy- 55.7 11 0.00025 37.4 3.3 44 423-467 243-286 (287)
195 PRK11678 putative chaperone; P 55.0 8.9 0.00019 40.8 2.6 20 9-29 2-21 (450)
196 PF07736 CM_1: Chorismate muta 54.8 21 0.00046 30.2 4.3 36 50-89 13-48 (118)
197 COG4820 EutJ Ethanolamine util 54.3 26 0.00057 32.7 5.1 19 94-113 44-62 (277)
198 KOG1386 Nucleoside phosphatase 53.9 43 0.00093 35.5 7.2 67 4-70 6-78 (501)
199 PRK13411 molecular chaperone D 53.8 11 0.00023 42.3 3.2 21 8-29 3-23 (653)
200 PRK13328 pantothenate kinase; 52.9 74 0.0016 31.0 8.5 71 382-469 183-253 (255)
201 PRK12440 acetate kinase; Revie 52.8 43 0.00092 34.9 7.0 50 389-447 296-346 (397)
202 PRK07157 acetate kinase; Provi 52.5 43 0.00093 34.9 6.9 51 389-447 295-346 (400)
203 TIGR02707 butyr_kinase butyrat 52.4 89 0.0019 32.1 9.3 76 9-98 2-80 (351)
204 PRK12440 acetate kinase; Revie 52.4 21 0.00046 37.1 4.7 32 4-35 1-33 (397)
205 PRK12379 propionate/acetate ki 52.0 48 0.001 34.5 7.2 48 390-446 294-342 (396)
206 COG4012 Uncharacterized protei 51.9 40 0.00086 32.8 6.0 44 8-61 228-271 (342)
207 PRK13329 pantothenate kinase; 51.7 82 0.0018 30.6 8.5 71 382-469 176-246 (249)
208 PTZ00009 heat shock 70 kDa pro 51.6 14 0.0003 41.4 3.6 19 8-26 5-23 (653)
209 PF00814 Peptidase_M22: Glycop 51.5 67 0.0015 31.6 8.0 113 320-454 136-255 (268)
210 TIGR00744 ROK_glcA_fam ROK fam 51.5 52 0.0011 32.9 7.5 70 389-468 228-309 (318)
211 PTZ00186 heat shock 70 kDa pre 51.2 14 0.0003 41.4 3.5 20 7-26 27-46 (657)
212 PRK12408 glucokinase; Provisio 50.5 50 0.0011 33.7 7.2 46 423-468 272-332 (336)
213 PF03309 Pan_kinase: Type III 49.5 31 0.00068 32.3 5.1 20 9-28 1-20 (206)
214 PLN02405 hexokinase 48.9 62 0.0013 34.9 7.7 47 425-471 435-490 (497)
215 TIGR02350 prok_dnaK chaperone 48.8 13 0.00028 41.1 2.8 20 9-29 2-21 (595)
216 PRK07058 acetate kinase; Provi 48.7 25 0.00054 36.5 4.6 31 5-35 2-35 (396)
217 COG0533 QRI7 Metal-dependent p 48.6 60 0.0013 33.0 7.1 76 8-88 2-79 (342)
218 cd02185 AroH Chorismate mutase 48.2 28 0.0006 29.5 3.9 37 49-89 12-48 (117)
219 COG2183 Tex Transcriptional ac 48.1 43 0.00093 37.6 6.4 65 6-88 329-394 (780)
220 TIGR01796 CM_mono_aroH monofun 47.8 28 0.00062 29.4 3.9 37 49-89 12-48 (117)
221 PF00012 HSP70: Hsp70 protein; 47.5 12 0.00025 41.4 2.1 18 9-26 1-18 (602)
222 PRK13322 pantothenate kinase; 46.9 14 0.00031 35.8 2.4 69 382-468 175-243 (246)
223 TIGR03281 methan_mark_12 putat 46.8 13 0.00028 37.0 2.0 23 9-31 1-23 (326)
224 PLN02914 hexokinase 45.6 78 0.0017 34.1 7.8 48 424-471 432-488 (490)
225 PRK05183 hscA chaperone protei 45.2 17 0.00037 40.4 3.0 20 7-26 19-38 (616)
226 PRK13327 pantothenate kinase; 44.9 1.4E+02 0.003 29.0 8.8 72 382-471 169-240 (242)
227 PRK00976 hypothetical protein; 44.3 24 0.00052 35.6 3.6 20 8-27 2-21 (326)
228 PRK09698 D-allose kinase; Prov 43.8 1.1E+02 0.0025 30.2 8.5 68 387-468 215-295 (302)
229 PRK00109 Holliday junction res 43.8 69 0.0015 28.0 6.0 23 8-30 5-27 (138)
230 PF03652 UPF0081: Uncharacteri 42.8 38 0.00083 29.5 4.3 23 8-30 2-24 (135)
231 PTZ00400 DnaK-type molecular c 42.6 20 0.00044 40.2 3.1 19 8-26 42-60 (663)
232 PRK13326 pantothenate kinase; 41.9 1.3E+02 0.0029 29.4 8.3 31 7-38 6-36 (262)
233 COG0849 ftsA Cell division ATP 41.7 78 0.0017 33.3 7.0 65 8-78 7-75 (418)
234 PRK14101 bifunctional glucokin 41.5 76 0.0016 35.5 7.4 50 423-472 270-333 (638)
235 TIGR00904 mreB cell shape dete 41.1 19 0.00042 36.5 2.5 21 10-31 5-25 (333)
236 PLN03184 chloroplast Hsp70; Pr 41.0 22 0.00048 40.0 3.1 19 8-26 40-58 (673)
237 PRK00292 glk glucokinase; Prov 40.4 71 0.0015 32.1 6.4 46 423-468 254-314 (316)
238 PRK01433 hscA chaperone protei 39.1 28 0.00061 38.5 3.4 22 7-29 19-40 (595)
239 PRK13917 plasmid segregation p 38.6 1E+02 0.0022 31.6 7.2 43 423-468 292-335 (344)
240 TIGR00016 ackA acetate kinase. 37.8 47 0.001 34.7 4.6 27 8-34 5-33 (404)
241 TIGR01865 cas_Csn1 CRISPR-asso 37.6 51 0.0011 37.9 5.3 23 7-29 1-23 (805)
242 PF04848 Pox_A22: Poxvirus A22 37.1 63 0.0014 28.5 4.7 25 8-32 2-26 (143)
243 TIGR01991 HscA Fe-S protein as 37.1 22 0.00048 39.4 2.3 18 9-26 1-18 (599)
244 PRK13328 pantothenate kinase; 37.1 34 0.00073 33.4 3.3 24 9-32 3-26 (255)
245 COG0282 ackA Acetate kinase [E 37.0 90 0.0019 32.2 6.3 26 8-33 2-28 (396)
246 PRK12397 propionate kinase; Re 36.4 1.1E+02 0.0025 31.9 7.1 48 390-446 298-346 (404)
247 PRK13321 pantothenate kinase; 36.2 1.9E+02 0.0041 28.1 8.5 63 9-88 2-64 (256)
248 PRK09585 anmK anhydro-N-acetyl 36.1 40 0.00088 34.7 3.8 78 7-89 2-99 (365)
249 PRK13331 pantothenate kinase; 36.0 1.7E+02 0.0037 28.5 7.9 58 7-88 7-64 (251)
250 PRK13928 rod shape-determining 35.5 23 0.0005 36.0 2.0 22 10-32 6-27 (336)
251 COG2441 Predicted butyrate kin 33.8 50 0.0011 32.4 3.8 45 10-61 1-46 (374)
252 PTZ00288 glucokinase 1; Provis 33.6 2.1E+02 0.0046 30.0 8.7 49 423-471 324-392 (405)
253 PLN02596 hexokinase-like 33.3 1.8E+02 0.004 31.3 8.3 48 425-472 430-486 (490)
254 PRK13322 pantothenate kinase; 32.7 2.3E+02 0.005 27.4 8.3 23 9-31 2-24 (246)
255 PF06406 StbA: StbA protein; 32.5 1.8E+02 0.0038 29.4 7.8 38 423-462 273-314 (318)
256 cd00012 ACTIN Actin; An ubiqui 32.5 18 0.0004 37.2 0.7 47 423-469 290-347 (371)
257 COG2971 Predicted N-acetylgluc 32.1 1.8E+02 0.0039 29.0 7.4 69 389-472 225-294 (301)
258 PLN02666 5-oxoprolinase 32.1 1.7E+02 0.0037 35.6 8.5 89 5-103 7-98 (1275)
259 TIGR00228 ruvC crossover junct 31.9 2.2E+02 0.0048 25.5 7.4 55 9-69 1-55 (156)
260 KOG2707 Predicted metalloprote 31.7 86 0.0019 31.9 5.1 76 9-88 34-111 (405)
261 PF02685 Glucokinase: Glucokin 31.6 2.4E+02 0.0052 28.5 8.5 21 10-30 1-21 (316)
262 COG0816 Predicted endonuclease 31.3 82 0.0018 27.8 4.4 22 7-28 2-23 (141)
263 COG1940 NagC Transcriptional r 31.0 1.8E+02 0.0039 29.0 7.6 72 388-469 223-307 (314)
264 PRK07157 acetate kinase; Provi 31.0 67 0.0015 33.5 4.4 27 9-35 5-32 (400)
265 KOG2707 Predicted metalloprote 30.5 1.3E+02 0.0029 30.6 6.1 81 384-474 272-359 (405)
266 PRK13320 pantothenate kinase; 30.4 2.6E+02 0.0057 27.0 8.3 25 8-33 3-27 (244)
267 KOG0101 Molecular chaperones H 30.1 53 0.0011 36.2 3.6 32 1-32 1-33 (620)
268 TIGR03739 PRTRC_D PRTRC system 29.9 1.8E+02 0.004 29.2 7.5 42 423-466 274-317 (320)
269 PF08735 DUF1786: Putative pyr 29.5 1.3E+02 0.0027 29.4 5.7 43 9-61 169-211 (254)
270 PRK11031 guanosine pentaphosph 29.1 1.5E+02 0.0033 32.0 7.0 32 9-41 134-165 (496)
271 PF00871 Acetate_kinase: Aceto 29.1 74 0.0016 33.2 4.4 28 9-36 2-30 (388)
272 PF03702 UPF0075: Uncharacteri 28.9 1.7E+02 0.0037 30.2 7.0 81 7-95 1-100 (364)
273 TIGR00671 baf pantothenate kin 28.4 1.1E+02 0.0024 29.6 5.3 29 10-39 2-30 (243)
274 PF07592 DDE_Tnp_ISAZ013: Rhod 28.3 1.2E+02 0.0026 30.5 5.4 75 368-457 142-224 (311)
275 PRK13929 rod-share determining 28.2 44 0.00096 33.9 2.6 19 9-29 6-25 (335)
276 COG5012 Predicted cobalamin bi 27.8 96 0.0021 29.5 4.5 47 392-447 164-211 (227)
277 PRK12397 propionate kinase; Re 27.5 84 0.0018 32.8 4.4 27 9-35 5-32 (404)
278 PRK13318 pantothenate kinase; 26.9 3E+02 0.0066 26.6 8.2 63 9-88 2-64 (258)
279 PF06723 MreB_Mbl: MreB/Mbl pr 26.9 32 0.00069 34.9 1.3 24 9-33 3-26 (326)
280 PF13756 Stimulus_sens_1: Stim 26.5 1.4E+02 0.003 25.0 4.9 24 15-38 15-38 (112)
281 COG2012 RPB5 DNA-directed RNA 25.7 36 0.00078 26.5 1.0 20 213-232 27-46 (80)
282 PRK13930 rod shape-determining 25.5 46 0.00099 33.6 2.2 15 10-24 11-25 (335)
283 PRK13927 rod shape-determining 25.0 56 0.0012 33.0 2.7 15 9-23 7-21 (334)
284 PLN02362 hexokinase 25.0 3.5E+02 0.0077 29.3 8.8 48 425-472 444-500 (509)
285 PRK12379 propionate/acetate ki 24.7 1E+02 0.0023 32.1 4.5 30 6-35 4-34 (396)
286 cd07207 Pat_ExoU_VipD_like Exo 24.3 60 0.0013 29.7 2.6 47 426-473 2-48 (194)
287 TIGR00749 glk glucokinase, pro 23.8 1E+02 0.0022 31.0 4.3 40 425-464 263-316 (316)
288 KOG0680 Actin-related protein 23.1 88 0.0019 31.5 3.4 45 392-447 298-342 (400)
289 PRK13329 pantothenate kinase; 22.4 69 0.0015 31.2 2.6 18 9-26 3-20 (249)
290 PF07066 DUF3882: Lactococcus 22.4 4.2E+02 0.0092 23.4 7.0 53 8-69 3-60 (159)
291 TIGR00250 RNAse_H_YqgF RNAse H 22.2 2E+02 0.0043 24.9 5.2 21 10-30 1-21 (130)
292 COG1521 Pantothenate kinase ty 21.3 2E+02 0.0044 28.0 5.5 30 9-39 2-31 (251)
293 cd06559 Endonuclease_V Endonuc 20.7 5.2E+02 0.011 24.4 8.0 37 7-43 26-69 (208)
294 COG0248 GppA Exopolyphosphatas 20.4 2E+02 0.0043 31.1 5.7 31 8-39 130-160 (492)
295 PRK13324 pantothenate kinase; 20.2 2E+02 0.0043 28.1 5.3 64 9-88 2-65 (258)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=3.2e-105 Score=797.57 Aligned_cols=493 Identities=54% Similarity=0.900 Sum_probs=468.1
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++|+++||.||||+|+++||.+|++++.++.+++.++|+|||+||||.++|.++..++++++.+ .++.+.+ |.+||
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~-iaaIG 79 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGE-IAAIG 79 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccc-eEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999988 6888999 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|+.|++|.++||+++|+|++|+|.|+|.|+.+.++++++. +..+.+.++||.+++|+|+..|+.|+.+|.|...+|+.
T Consensus 80 ITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~--g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae 157 (499)
T COG0554 80 ITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD--GYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAE 157 (499)
T ss_pred eeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc--chhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhh
Confidence 9999999999999999999999999999999999999987 45678899999999999999999999999999999999
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCC
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~ 245 (523)
++.++|++++.||.|+|||+. .++||+||||+|+|||+++.+||+++|+.||||.+.||+++++.++.|.+..+++.
T Consensus 158 ~Gel~fGTiDtWLiw~LTgg~---~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g 234 (499)
T COG0554 158 KGELLFGTIDTWLIWKLTGGK---VHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLG 234 (499)
T ss_pred cCCeEEecchhhheeeccCCc---eeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccC
Confidence 999999999999999999973 89999999999999999999999999999999999999999999999998765456
Q ss_pred CCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHH
Q 009868 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAA 324 (523)
Q Consensus 246 ~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 324 (523)
..+||....||||||++|.|| +||++..+.||+++++++++++++.++++++++++|.+++ .-.|.+||++..+|.+
T Consensus 235 ~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~g--k~~YALEGsif~aGaa 312 (499)
T COG0554 235 AEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDG--KVTYALEGSIFVAGAA 312 (499)
T ss_pred CceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCC--eEEEEEecceeehhhH
Confidence 779999999999999999999 9999999999999999999988898889999999998743 4589999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHH
Q 009868 325 VQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVL 404 (523)
Q Consensus 325 l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l 404 (523)
++|++|.++..++..+.+.+|.+++.++|++|+|.|.|.++||||+++||.|+||+..++++||+||++|+|||+.|+++
T Consensus 313 vqWLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~ 392 (499)
T COG0554 313 VQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVL 392 (499)
T ss_pred HHHHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888889999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhccc
Q 009868 405 DSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484 (523)
Q Consensus 405 ~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~ 484 (523)
+.|++..+.+ ++++++.||+++|+++||++||+||.||+++...|.||+|||++|+.++|.|+|.+|.++.+
T Consensus 393 ~aM~~d~~~~--------~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~~~~ 464 (499)
T COG0554 393 EAMEKDSGIK--------LTRLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELAELW 464 (499)
T ss_pred HHHHHhcCCC--------ceeEEEcCccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHHhhh
Confidence 9999988877 89999999999999999999999999999999999999999999999999999999985443
Q ss_pred CCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchh
Q 009868 485 RTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLA 519 (523)
Q Consensus 485 ~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~ 519 (523)
+..++|+|..+..++.++|..|++++++.+.|.
T Consensus 465 --~~~~~f~p~m~~~~r~~~y~~W~~AV~rs~~~~ 497 (499)
T COG0554 465 --PLDKEFEPGMDEEEREELYAGWKKAVKRSLGWR 497 (499)
T ss_pred --cccceeCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 478999999998888999999999999999884
No 2
>PLN02295 glycerol kinase
Probab=100.00 E-value=4e-98 Score=802.40 Aligned_cols=503 Identities=80% Similarity=1.271 Sum_probs=441.0
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc---CceEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS---GLKAI 84 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~I~aI 84 (523)
|+||||+|||++|++|||.+|+++++.+.+++..+|.+||+||||++||++++++++++++++ +.++++ .|.+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~---~~~~~~i~~~i~aI 77 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKA---AAKGHNVDSGLKAI 77 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHc---CCCccccccceEEE
Confidence 589999999999999999999999999999998899999999999999999999999999873 344433 06999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|+|+|++++++||+++|+||+|+|+|+|.|+.++++++.+.+++..+.++++||+++++.++++||+||++|+||+|+++
T Consensus 78 g~s~q~~~~v~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~ 157 (512)
T PLN02295 78 GITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAV 157 (512)
T ss_pred EEecCcceEEEEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHHHhh
Confidence 99999999999964489999999999999999999999986411234567999999999999999999999999999988
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCC
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWP 244 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l 244 (523)
+++..+|++++|||.|+|||+....++++|+|+||+|++||+++++|++++++.+||+.++||+++++++++|+|+.+ .
T Consensus 158 ~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~-~ 236 (512)
T PLN02295 158 KSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKG-W 236 (512)
T ss_pred hcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceeccccc-c
Confidence 655667999999999999993000037999999999999999999999999999999999999999999999999887 4
Q ss_pred C-CCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhH
Q 009868 245 I-TGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGA 323 (523)
Q Consensus 245 ~-~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (523)
. .|+||++|++|++|+++|+|+++|++.+++|||+++.+.+...+..++.+....++|..+...|+.|.++++++++|.
T Consensus 237 a~~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~ 316 (512)
T PLN02295 237 PLAGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGA 316 (512)
T ss_pred ccCCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHH
Confidence 4 499999999999999999999889999999999886655543334444555555666543333789999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHH
Q 009868 324 AVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDV 403 (523)
Q Consensus 324 ~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~ 403 (523)
+++|+++.++...++++++++++++++++|++|+|||.|+|+|+||+++||+|+||+..|+++||+||++|||||.+|++
T Consensus 317 ~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~ 396 (512)
T PLN02295 317 AVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDV 396 (512)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998875445778888887778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh-----ccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChh
Q 009868 404 LDSMQKDA-----VEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEE 478 (523)
Q Consensus 404 l~~l~~~~-----g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~ 478 (523)
++.|++.. +.+ +++|+++||+++|++|+||+||+||+||+++...|++++|||++|++++|.|++++
T Consensus 397 l~~l~~~~~~~~~~~~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~ 468 (512)
T PLN02295 397 LDAMRKDAGEEKSHKG--------LFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEE 468 (512)
T ss_pred HHHHHhhhcccccCCC--------cceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHH
Confidence 99998641 335 78999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchhcccC
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 523 (523)
++.++++ +..++|+|+++++++.++|++|+++|++++.|.++|+
T Consensus 469 ~~~~~~~-~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~~~~ 512 (512)
T PLN02295 469 IFASEKW-KNTTTFRPKLDEEERAKRYASWCKAVERSFDLADLSI 512 (512)
T ss_pred HHHHhcc-CCCeEECCCCCHHHHHHHHHHHHHHHHHHhcchhcCC
Confidence 7644665 5778999999998944679999999999999877763
No 3
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=1.4e-97 Score=796.73 Aligned_cols=492 Identities=53% Similarity=0.865 Sum_probs=441.3
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
|+.|+||||+|||++|++|||.+|++++..+.+++..+|.+||+||||++||+++++++++++++ .+.++++ |.+|
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~-I~~I 78 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQ-IAAI 78 (498)
T ss_pred ccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhH-eeEE
Confidence 34689999999999999999999999999999999889999999999999999999999999977 4666778 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|+|+|+++++++|+++|+|++|+|+|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+||+|+++
T Consensus 79 gis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~ 156 (498)
T PRK00047 79 GITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRD--GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERA 156 (498)
T ss_pred EEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhc--cchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHHHH
Confidence 99999999999996369999999999999999999999876 2345699999999999999999999999999999999
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCce-eEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW 243 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~ 243 (523)
.+...+|++++|||.|+|||+ + +++|+|+||+|++||+++++|++++|+.+||+.++||+|+++++++|+|+...
T Consensus 157 ~~~~~~~~~~~dyl~~~LTG~----~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~ 232 (498)
T PRK00047 157 EKGELLFGTIDTWLVWKLTGG----KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYG 232 (498)
T ss_pred hcCCeEEeChHHhHhhhhcCC----CeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccc
Confidence 875667889999999999973 4 89999999999999999999999999999999999999999999999997532
Q ss_pred -CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhch
Q 009868 244 -PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIA 321 (523)
Q Consensus 244 -l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
+.+||||++|++|++|+++|+|+ ++|++.+++|||+++.+.+.+.|..++.+....+++.+. ....|.+++++.++
T Consensus 233 ~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~ 310 (498)
T PRK00047 233 FFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGID--GKVVYALEGSIFVA 310 (498)
T ss_pred cCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcC--CCcEEEEEeeHhhH
Confidence 66899999999999999999999 999999999999886665544566655555555555431 12279999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 322 GAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 322 G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
|.+++|+++.++....+++++++++..|++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|
T Consensus 311 g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r 390 (498)
T PRK00047 311 GSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTR 390 (498)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999988654456778888877888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||++||++|+||+|||||+||++++..|++++|||++|++++|.|++++++
T Consensus 391 ~~~e~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~- 461 (498)
T PRK00047 391 DVLDAMQADSGIR--------LKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL- 461 (498)
T ss_pred HHHHHHHHhcCCC--------CceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-
Confidence 9999998645777 8999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhch
Q 009868 482 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNL 518 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 518 (523)
.++. +..++|+|++++++|.+.|++|+++|+++++|
T Consensus 462 ~~~~-~~~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~ 497 (498)
T PRK00047 462 KEQW-KIDRRFEPQMDEEEREKLYAGWKKAVKRTLAW 497 (498)
T ss_pred Hhhc-CCCeEECCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5665 57889999999988336799999999998887
No 4
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=2.4e-97 Score=795.55 Aligned_cols=496 Identities=57% Similarity=0.950 Sum_probs=442.9
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcc--cCceEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVD--SGLKAI 84 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~I~aI 84 (523)
.|+||||+|||++|++|||.+|++++..+.+++...|.+||.||||++||++++++++++++++ +..+. + |.+|
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~---~~~~~~~~-I~aI 77 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL---REKGPSFK-IKAI 77 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc---CCCCccCc-eEEE
Confidence 3899999999999999999999999999999998889999999999999999999999999874 33444 7 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|+|+||++++++|+++|+||+|+|+|+|.|+.++++++.+.+ +..+.++++||+++++.++++||+|+++|+|++|+++
T Consensus 78 gis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~-~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~ 156 (504)
T PTZ00294 78 GITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKY-GGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAV 156 (504)
T ss_pred EeecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhc-CcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhh
Confidence 999999999999874699999999999999999999999875 2225677999999999999999999999999999988
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC-
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW- 243 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~- 243 (523)
+++..+|++++|||.|+|||+ +++++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|+...
T Consensus 157 ~~~~~~~~~~~dyl~~~LTG~---~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~ 233 (504)
T PTZ00294 157 KEGTLLFGTIDTWLIWNLTGG---KSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAV 233 (504)
T ss_pred hcCCeEEEcHHHHHHHHhcCC---ceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhc
Confidence 754567889999999999983 2689999999999999999999999999999999999999999999999997422
Q ss_pred -CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhch
Q 009868 244 -PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIA 321 (523)
Q Consensus 244 -l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
+++|+||++|++|++|+++|+|+ ++|++.+++|||+++.+.+.+.+..++.+.+..++|..+...|+.|.+++++.++
T Consensus 234 ~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (504)
T PTZ00294 234 PLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVA 313 (504)
T ss_pred CCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhh
Confidence 67899999999999999999999 9999999999998865555444555555555555665422235689999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 322 GAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 322 G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
|.+++|+++.++...+++++++++++++++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|
T Consensus 314 g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r 393 (504)
T PTZ00294 314 GAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTN 393 (504)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998765568888888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||+++|++|+||+||++|+||++++..|++++|||++|++++|.|+|++++.
T Consensus 394 ~~~~~l~~~~g~~--------~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~ 465 (504)
T PTZ00294 394 DVIESMEKDAGIE--------LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVK 465 (504)
T ss_pred HHHHHHHHhhCCC--------cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHH
Confidence 9999998745777 89999999999999999999999999999999999999999999999999999999874
Q ss_pred cccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhchhc
Q 009868 482 SGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNLAD 520 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~~ 520 (523)
+++.+..++|+|++++++ | ++|++|+++|+.+.+|.+
T Consensus 466 -~~~~~~~~~~~P~~~~~~-y~~~~~~~~~~~~~~~~~~~ 503 (504)
T PTZ00294 466 -KLIRRSNSTFSPQMSAEE-RKAIYKEWNKAVERSLKWAK 503 (504)
T ss_pred -HhccCCCcEECCCCCHHH-HHHHHHHHHHHHHHHhcccc
Confidence 444235689999999999 7 569999999999998864
No 5
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=4.6e-95 Score=776.35 Aligned_cols=492 Identities=58% Similarity=0.939 Sum_probs=442.8
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|+||||+|||++|++|||.+|++++..+.+++..+|.+||.|||+++||+++++++++++++ .++.+++ |.+||+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~-i~aIgi 76 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDD-IAAIGI 76 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhh-eeEEEE
Confidence 479999999999999999999999999999999888999999999999999999999999987 4666778 999999
Q ss_pred ccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK 166 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~ 166 (523)
++|+++++++|+++|+||+|+++|+|.|+.++++++.+.+ +.++++++||+++++.++++||+|+++|+||+|+++++
T Consensus 77 s~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~ 154 (493)
T TIGR01311 77 TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEG--YGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAER 154 (493)
T ss_pred ecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhc--chHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhc
Confidence 9999999999973599999999999999999999999875 44689999999999999999999999999999999975
Q ss_pred CCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCCC
Q 009868 167 GDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPIT 246 (523)
Q Consensus 167 ~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~~ 246 (523)
...+|++++|||.|+|||.. +.++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|+++...+.+
T Consensus 155 ~~~~~~~~~dyl~~~LtG~~---~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~ 231 (493)
T TIGR01311 155 GELLFGTIDTWLIWNLTGGK---VHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGA 231 (493)
T ss_pred CCeEEECHhHhhhhhccCCc---eEEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCC
Confidence 55678899999999999921 689999999999999999999999999999999999999999999999997643678
Q ss_pred CCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHH
Q 009868 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAV 325 (523)
Q Consensus 247 g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 325 (523)
|+||++|++|++|+++|+|+ ++|++++++|||+++.+.+.+.+..++.+....++|.++. .+..|.+++++.++|.++
T Consensus 232 g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~g~~~ 310 (493)
T TIGR01311 232 EIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGG-KKPVYALEGSVFVAGAAV 310 (493)
T ss_pred CceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCC-CCceEEEEeehhhhHHHH
Confidence 99999999999999999999 9999999999998865555444555555555555554321 011489999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHH
Q 009868 326 QWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLD 405 (523)
Q Consensus 326 ~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~ 405 (523)
+|+++.++....++++++++++++++++++|+|||.|+|+|+||+++||+|+|++.+|+++||+||++|||||.+|++++
T Consensus 311 ~W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~ 390 (493)
T TIGR01311 311 QWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLE 390 (493)
T ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987555678888888877888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccC
Q 009868 406 SMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485 (523)
Q Consensus 406 ~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~ 485 (523)
.|++..|.+ +++|+++||++||++|+||+||++|+||++++..|++++|||++|++++|.|+|++++ ++++
T Consensus 391 ~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~ 461 (493)
T TIGR01311 391 AMEKDAGVE--------ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALW 461 (493)
T ss_pred HHHHhcCCC--------CceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhc
Confidence 998644777 8999999999999999999999999999999999999999999999999999999987 7775
Q ss_pred CCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhch
Q 009868 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERTFNL 518 (523)
Q Consensus 486 ~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 518 (523)
+..++|+|+++++++.++|++|+++++++++|
T Consensus 462 -~~~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 462 -RVEKTFEPEMDEEEREARYAGWKEAVKRSLGW 493 (493)
T ss_pred -CCCcEECCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 57789999999988446799999999999887
No 6
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=3.7e-94 Score=771.49 Aligned_cols=477 Identities=24% Similarity=0.395 Sum_probs=431.7
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|+||||+|||++|++++|.+|++++..+.+++...+.+|+.|||+++||+++++++++++++ .+.. ++ |.+|||+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~-I~~Igis 75 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DE-ILFVSFS 75 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-Cc-eEEEEEe
Confidence 58999999999999999999999999999998778899999999999999999999999886 3333 67 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+||+++++||+ +|+||+|+|+|+|.|+.++++++.+.+ +.++++++||+++++.++++||+|+++|+|++|+++++
T Consensus 76 ~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~- 151 (505)
T TIGR01314 76 TQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKESK--NGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAK- 151 (505)
T ss_pred cccceeEEECC-CcCCcccceeccccchHHHHHHHHhhc--CHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhcE-
Confidence 99999999998 899999999999999999999999875 45789999999999999999999999999999999986
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|++++|||.|+||| ++++|+|+||+|++||+++++|++++++.+||++++||+++++++++|+|+.
T Consensus 152 ---~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~ 223 (505)
T TIGR01314 152 ---YLEIKGYIFQRLFG-----TYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKM 223 (505)
T ss_pred ---EECHHHHHHHHHcC-----CceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
| |++||||++|++|++|+++|+|+ +||++++++|||+++...+ ++|..++.+.. ++|.+ .++.|.+++++++
T Consensus 224 G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~ 296 (505)
T TIGR01314 224 G-IQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVI-DKPKTDEKGRI--FCYAL---TKEHWVIGGPVNN 296 (505)
T ss_pred C-CCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeecc-CcCccCCCCce--EEEEe---cCCcEEEEeeecc
Confidence 5 88999999999999999999999 9999999999999876554 34555444432 33332 2467999999999
Q ss_pred hhHHHHHHHHHcCC----------CCCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHH
Q 009868 321 AGAAVQWLRDSLGI----------ISSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIA 389 (523)
Q Consensus 321 ~G~~l~w~~~~~~~----------~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~ 389 (523)
+|.+++|+++.+.. .+.|+.|+++++++| ++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+
T Consensus 297 ~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~ 376 (505)
T TIGR01314 297 GGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMI 376 (505)
T ss_pred hHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHH
Confidence 99999999987642 135788999888775 7889999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHH
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGL 469 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~ 469 (523)
||++|||||.+|++++.+++..|.+ +++|+++||++||++|+||+||+||+||++++..|++++|||++|++
T Consensus 377 rAvlEgia~~~~~~~~~~~~~~g~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~ 448 (505)
T TIGR01314 377 RAALEGVIYNLYTVALALVEVMGDP--------LNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLK 448 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--------CcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCCcchHHHHHHHHH
Confidence 9999999999999999997755766 89999999999999999999999999999999999999999999999
Q ss_pred hccccCChhHHhcccCCCCCcEEeCCCCHHHHHH-HHHHHHHHHHHHhch
Q 009868 470 AIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKK-KAESWCRAVERTFNL 518 (523)
Q Consensus 470 ~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~-~y~~~~~~~~~~~~~ 518 (523)
++|.+++++++ ..+. +..++|+|++++++.|+ .|++|+++++++...
T Consensus 449 ~~G~~~~~~~~-~~~~-~~~~~~~P~~~~~~~Y~~~y~~y~~~~~~~~~~ 496 (505)
T TIGR01314 449 ALGLIEDFSEV-STMV-GTTETHTPIEKNFEIYREISPIFINLSRSLLAE 496 (505)
T ss_pred hcCccCCHHHH-HHhc-CCCceECcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 6665 57889999999998874 699999999988753
No 7
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=9.8e-94 Score=764.40 Aligned_cols=472 Identities=23% Similarity=0.334 Sum_probs=422.3
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
++||||+|||++|++|||.+|++++..+.+++..+|.+||.||||++||+++++++++++++. ..++ |.+||||
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~-----~~~~-I~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQD-VKALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC-----Cccc-eeEEEEe
Confidence 479999999999999999999999999999998889999999999999999999999998762 3467 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+|+|+++++|+ +|+|++|+++|+|.|+.++++++.+.. + .++++||+++++.++++||+|+++|+||+|+|+++
T Consensus 75 ~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~--~--~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~- 148 (484)
T PRK15027 75 GQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARV--P--QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK- 148 (484)
T ss_pred cCCCceEEECC-CcCCccccccccCccHHHHHHHHHHhc--c--hhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhh-
Confidence 99999999999 999999999999999999999999874 2 46789999999999999999999999999999986
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|++++|||.|+||| ++++|+|+|++|++||+++++|++++++.+||+.++||+++++++++|+|+.
T Consensus 149 ---~~~~~dyl~~~LTG-----~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~ 220 (484)
T PRK15027 149 ---VLLPKDYLRLRMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAW 220 (484)
T ss_pred ---hcChHHHHHhhhcC-----CccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHh
Confidence 89999999999999 8899999999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
| |+ +|||++|++|++|+++|+|+ ++|++.+++|||+++...+ +++..++.+....+++ ..|+.|.+++.+.+
T Consensus 221 G-L~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 293 (484)
T PRK15027 221 G-MA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVS-EGFLSKPESAVHSFCH----ALPQRWHLMSVMLS 293 (484)
T ss_pred C-CC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEec-CCcccCchhceeecce----ecCCceEEEEEehh
Confidence 4 65 69999999999999999999 9999999999998766544 3444443333223333 24778999999999
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQ 399 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~ 399 (523)
+|.+++|+++.++. ..++++.+.++++ |++++++|+|||.|+|+|+|||++||+|+||+.+|+++||+||++|||||.
T Consensus 294 ~g~~~~W~~~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~ 372 (484)
T PRK15027 294 AASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYA 372 (484)
T ss_pred hHHHHHHHHHHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998864 3477777777776 588899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHHhccccCChh
Q 009868 400 VKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGLAIGVFKEEE 478 (523)
Q Consensus 400 ~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~~~G~~~~~~ 478 (523)
+|++++.+++ .|.+ +++|+++||++||++|+||+||++|+||++.. ..+++++|||++|++++|.++|++
T Consensus 373 ~~~~~~~l~~-~g~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~ 443 (484)
T PRK15027 373 LADGMDVVHA-CGIK--------PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLI 443 (484)
T ss_pred HHHHHHHHHH-cCCC--------ccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHH
Confidence 9999999986 4777 89999999999999999999999999997765 445889999999999999999999
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
++. ++. +..++|+|++++++.| +.|++|+++|.+++.+
T Consensus 444 ~~~-~~~-~~~~~~~P~~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 444 ELL-PQL-PLEQSHLPDAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHH-hhc-CCCceECCCHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 874 433 5678999999999887 5699999999987653
No 8
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=1.1e-90 Score=746.64 Aligned_cols=481 Identities=25% Similarity=0.338 Sum_probs=421.3
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeec--cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQF--YPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
|+|+||||+|||++|+++||.+|++++..+.+++.. .+.+||+||||++||+++++++++++++ .+..+++ |.+
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~-I~a 77 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASD-IAA 77 (520)
T ss_pred CcEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccc-eEE
Confidence 359999999999999999999999999998887644 4678999999999999999999999977 4556678 999
Q ss_pred EEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHH
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEA 163 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~ 163 (523)
||+|+|++++++||+ +|+|+.+ +.|.|.|+.++++++++.++...++++++||.++ +.++++||+|+++|+||+|+|
T Consensus 78 I~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~ 154 (520)
T PRK10939 78 VSATSMREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQ 154 (520)
T ss_pred EEEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHH
Confidence 999999999999999 8999965 6799999999999999874111367899999875 678999999999999999999
Q ss_pred HhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc--
Q 009868 164 IKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK-- 241 (523)
Q Consensus 164 ~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-- 241 (523)
+++ |++++|||.|+||| ++++|+|+||+|+|||+++++|++++++.+||+.++||+|+++++++|+|+.
T Consensus 155 ~~~----~~~~~dyl~~~LTG-----~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~ 225 (520)
T PRK10939 155 AHT----ITMISDWIAYMLSG-----ELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKA 225 (520)
T ss_pred hhe----EechhHhhhheeeC-----ceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHH
Confidence 986 99999999999999 8999999999999999999999999999999999999999999999999963
Q ss_pred ----CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEecc
Q 009868 242 ----GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEG 316 (523)
Q Consensus 242 ----~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (523)
| |++|+||++|++|++|+++|+|+ ++|++++++|||+++...+.. +..++.+.....++ ..++.|.+++
T Consensus 226 A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~ 299 (520)
T PRK10939 226 AAETG-LRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPA-PVTDPNMNIRINPH----VIPGMVQAES 299 (520)
T ss_pred HHhhC-CCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccc-cccCccccceecee----eeCCcceEee
Confidence 5 78899999999999999999999 999999999999886655543 44443322212222 2467899999
Q ss_pred chhchhHHHHHHHHHcCCC----------CCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCC--
Q 009868 317 SIAIAGAAVQWLRDSLGII----------SSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFT-- 383 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~----------~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~-- 383 (523)
.+.++|.+++||+++|+.. +.|++|++++++.| +++++ +|||.|++.|.+++++||+|+||+.+|
T Consensus 300 ~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~ 377 (520)
T PRK10939 300 ISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEK 377 (520)
T ss_pred eeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCccc
Confidence 9999999999999987531 34788999888875 77777 599999987555568999999999987
Q ss_pred -CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHH
Q 009868 384 -SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALG 462 (523)
Q Consensus 384 -~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alG 462 (523)
+++||+||++|||||.+|++++.+++..|.+ +++|+++||+++|++|+||+|||+|+||++++..|++++|
T Consensus 378 ~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alG 449 (520)
T PRK10939 378 CNKATLFRALEENAAIVSACNLQQIAAFSGVF--------PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALG 449 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHH
Confidence 9999999999999999999999998744777 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhchh
Q 009868 463 AAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNLA 519 (523)
Q Consensus 463 aA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~ 519 (523)
||++|++++|+|+|++++.+.+. +..++|+|++++++.| +.|++|+++|++++.+.
T Consensus 450 aA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~~ 506 (520)
T PRK10939 450 CAIAAGVGAGIYSSLAETGERLV-RWERTFEPNPENHELYQEAKEKWQAVYADQLGLV 506 (520)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHc-ccCceECcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998866665 4688999999998877 56999999998877653
No 9
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=6.4e-91 Score=750.30 Aligned_cols=475 Identities=23% Similarity=0.304 Sum_probs=415.4
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
++||||+|||++|++|||.+|+++++.+.+++..+|.+||.||||++||+++++++++++++ .+.+.++ |.+|||+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~-I~~Igis 76 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNS-VKGIGFD 76 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhh-eEEEEec
Confidence 37899999999999999999999999999999889999999999999999999999999987 4556678 9999999
Q ss_pred cccceeEEeeCCCCccc---------cccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcCh
Q 009868 88 NQRETTVLWSKSTGCPL---------YNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVD 158 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l---------~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p 158 (523)
+| ++++++|+ +|+|| +|+|+|+|.|+.++++++++. . ++++++||+++++.++++||+|+++|+|
T Consensus 77 ~~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~---~-~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 150 (541)
T TIGR01315 77 AT-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINAT---N-HNLLRYVGGKMSVEMEIPKVLWLKNNMP 150 (541)
T ss_pred cc-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHH---H-HHHHHHhCCeeCcchhHHHHHHHHHhCh
Confidence 99 89999998 89999 899999999999999999865 2 4788999999999999999999999999
Q ss_pred HHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhccccccc---CCCCCCCHHHHhhcCCCC---CCC----CC
Q 009868 159 AVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMN---LKTLDWDKPTLETLGIPA---EIL----PK 228 (523)
Q Consensus 159 e~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~gi~~---~~L----P~ 228 (523)
|+|+++++ |++++|||.|+||| +.++|+++++.+++|| +++++||+++++.+||+. ++| |+
T Consensus 151 e~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~ 221 (541)
T TIGR01315 151 PELFARCK----FFDLTDFLTWRATG-----KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGS 221 (541)
T ss_pred HHHHHhhh----hcchhhhheeeeec-----chhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCc
Confidence 99999986 99999999999999 8899999999989998 699999999999999984 234 99
Q ss_pred cccCCccccc-ccc------CCCCCCCcEEEeccchhhhhhcCC---C-CCC-------CeEEEecCceeeeeecCcccc
Q 009868 229 IVSNSEIIGK-IGK------GWPITGIPISGCLGDQHAAMLGQA---C-KKG-------EAKSTYGTGAFILMNTGEEVV 290 (523)
Q Consensus 229 i~~~~~~~G~-v~~------~~l~~g~pV~~g~gD~~aa~~g~g---~-~~g-------~~~~~~GTs~~~~~~~~~~~~ 290 (523)
++++++++|+ |+. | |++||||++|++|++|+++|+| + ++| ++.+++|||+++.... +.|.
T Consensus 222 i~~~~~~~G~~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~-~~~~ 299 (541)
T TIGR01315 222 WMSPGELVGGGLTAEAAQELG-LPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMT-KGPV 299 (541)
T ss_pred ccCCCcccccccCHHHHHHhC-CCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEec-CCCc
Confidence 9999999999 863 5 8899999999999999999995 4 666 8889999998765444 3444
Q ss_pred ccCCCceeee-eeecCCCCCceeEeccchhchhHHHHHHHHHcCCC------------CCHHHHHH----HHHhcC-C--
Q 009868 291 KSKHGLLSTL-AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII------------SSASEIEE----LALQVN-S-- 350 (523)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~------------~~~~~l~~----~a~~~~-~-- 350 (523)
.++ +.+..+ ++ ..++.|.++++++++|.+++|+++.+... +.|+.|++ ++++.+ +
T Consensus 300 ~~~-~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (541)
T TIGR01315 300 FVP-GVWGPYRDA----LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSI 374 (541)
T ss_pred cCC-ceeecccCc----cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCcc
Confidence 433 322111 11 24678999999999999999999876411 23544444 344443 3
Q ss_pred ---CCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCH---HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCcc
Q 009868 351 ---TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSK---AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424 (523)
Q Consensus 351 ---~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~---~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~ 424 (523)
++|++|+|||.|+|+|+|||++||+|+||+.+|++ +||+||++|||||.+|++++.|++ .|.+ ++
T Consensus 375 ~~~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~--------~~ 445 (541)
T TIGR01315 375 SYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHT--------IK 445 (541)
T ss_pred ccCCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------cc
Confidence 37999999999999999999999999999999999 999999999999999999999987 4777 89
Q ss_pred EEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHH-HHH-
Q 009868 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEE-FRK- 502 (523)
Q Consensus 425 ~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~-~~~- 502 (523)
+|+++||++||++|+||+|||||+||+++...|++++|||++|++++|.|+|++++.+.|+ +..++|+|+++++ +.|
T Consensus 446 ~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~Y~ 524 (541)
T TIGR01315 446 SIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMS-KPGKTVWPRGDPAKKLHD 524 (541)
T ss_pred EEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhc-cCCcEEcCCcchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988866765 5678999999998 877
Q ss_pred HHHHHHHHHHHHHhch
Q 009868 503 KKAESWCRAVERTFNL 518 (523)
Q Consensus 503 ~~y~~~~~~~~~~~~~ 518 (523)
++|++|+++|++.+.+
T Consensus 525 ~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 525 RKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5699999999886654
No 10
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1.2e-89 Score=743.72 Aligned_cols=485 Identities=20% Similarity=0.252 Sum_probs=422.6
Q ss_pred CceEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeec------cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 009868 6 EVFIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQF------YPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVD 78 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~------~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 78 (523)
+.|+||||+|||++|++|||. +|+++++.+.+++.. +|.+||+||||++||+++++++++++++ .+..+.
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~ 78 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDPA 78 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCChh
Confidence 458999999999999999995 999999999988843 5899999999999999999999999987 455667
Q ss_pred cCceEEEEccccceeEEeeCCCCcccc-----------ccccccccCCHHHHHHHHHhCCCChHHHHHHh-CCCCCccCh
Q 009868 79 SGLKAIGLTNQRETTVLWSKSTGCPLY-----------NAIVWMDARTSSVCRKLEKELPGGKTHFLEAV-GLPISTYFS 146 (523)
Q Consensus 79 ~~I~aIgis~~~~~~v~~d~~~g~~l~-----------~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~t-G~~~~~~~~ 146 (523)
+ |.+||||+|+++++++|+ +|+||+ |+|+|+|.|+.++++++.+......+++++++ |.++++.++
T Consensus 79 ~-I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (548)
T PRK04123 79 A-VVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWF 156 (548)
T ss_pred h-EEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchH
Confidence 8 999999999999999999 899998 89999999999999999876410125677655 999999999
Q ss_pred HHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCC-CCCCCHHHHhhcC-----
Q 009868 147 AVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLK-TLDWDKPTLETLG----- 220 (523)
Q Consensus 147 ~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~-~~~W~~~ll~~~g----- 220 (523)
++||+||++|+||+|+++++ |++++|||.|+|||+......++|+++++.+++||++ +..||+++|+.+|
T Consensus 157 ~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~ 232 (548)
T PRK04123 157 WAKILHVLREDPAVYEAAAS----WVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLAR 232 (548)
T ss_pred HHHHHHHHhhCHHHHHHHhH----hccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhh
Confidence 99999999999999999986 8999999999999942212456899999999999999 5666999999996
Q ss_pred -CCCCCCCCcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccC
Q 009868 221 -IPAEILPKIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSK 293 (523)
Q Consensus 221 -i~~~~LP~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~ 293 (523)
|+.++||+|+++++++|+|+. | |++|+||++|++|++|+++|+|+++|++++++||++++....+ ++.. .
T Consensus 233 ~i~~~llP~l~~~g~~~G~v~~~~a~~~G-L~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~-~~~~-~ 309 (548)
T PRK04123 233 GLRDKLFTETWTAGEPAGTLTAEWAQRLG-LPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLAD-KQRA-V 309 (548)
T ss_pred hhHhhcCCccccCCCcccccCHHHHHHhC-CCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecC-Cccc-c
Confidence 888999999999999999964 5 8899999999999999999999988999999999988765443 3322 1
Q ss_pred CCceeeeeeec-CCCCCceeEeccchhchhHHHHHHHHHcCC-----------CCCHHHHHHHHHhcC-CCCceEEEcCC
Q 009868 294 HGLLSTLAFKL-GPKAPTNYALEGSIAIAGAAVQWLRDSLGI-----------ISSASEIEELALQVN-STGGVYFVPAF 360 (523)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~-----------~~~~~~l~~~a~~~~-~~~gl~~~P~l 360 (523)
.+. ++.. ++..++.|.++++++++|.+++||++.++. ...|+++++++++.| ++++++|+|||
T Consensus 310 ~~~----~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l 385 (548)
T PRK04123 310 PGI----CGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWF 385 (548)
T ss_pred Cce----eecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccc
Confidence 222 2211 123467899999999999999999998742 134788888888774 88999999999
Q ss_pred CCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHHHH
Q 009868 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNLLM 439 (523)
Q Consensus 361 ~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~ 439 (523)
.|+|+|+|||++||+|+||+.+|+++||+||++|||+|.+|++++.|++ .|.+ +++|+++||+ +||++|+
T Consensus 386 ~Ger~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~--------~~~i~~~GGg~s~s~~w~ 456 (548)
T PRK04123 386 NGRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVP--------VEEVIAAGGIARKNPVLM 456 (548)
T ss_pred cCCCCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------cceEEEeCCCcccCHHHH
Confidence 9999999999999999999999999999999999999999999999987 5767 8999999999 9999999
Q ss_pred HHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHH
Q 009868 440 QIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERT 515 (523)
Q Consensus 440 qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~ 515 (523)
||+||+||+||++++..|++++|||++|++++|.|++++++.+.+.....++|+|+++.++.| ++|++|+++++..
T Consensus 457 Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 457 QIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999886666434567899999998877 5699999998876
No 11
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=2.8e-89 Score=737.88 Aligned_cols=481 Identities=19% Similarity=0.229 Sum_probs=422.4
Q ss_pred eEEEEecCCCCceEEEEc-CCCCEEEEEEeeeee-----ccCC------CCeEEeCHHHHHHHHHHHHHHHHHHHhhCCC
Q 009868 8 FIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQ-----FYPE------AGWVEHEPMEILESVRVCMAKALDKATADGH 75 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d-~~g~i~~~~~~~~~~-----~~~~------~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~ 75 (523)
|+||||+|||++|++||| .+|++++..+.+++. .+|. +||+||||++||+++++++++++++ .+.
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~~ 78 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LGV 78 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cCC
Confidence 789999999999999999 899999999999873 4664 8999999999999999999999987 455
Q ss_pred CcccCceEEEEccccceeEEeeCCCCccccc-----------cccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCcc
Q 009868 76 NVDSGLKAIGLTNQRETTVLWSKSTGCPLYN-----------AIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTY 144 (523)
Q Consensus 76 ~~~~~I~aIgis~~~~~~v~~d~~~g~~l~~-----------~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~ 144 (523)
++++ |++||+|+|++|++++|+ +|+||+| +|+|+|.|+.++++++++......+.++++||+++++.
T Consensus 79 ~~~~-I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~ 156 (536)
T TIGR01234 79 DPAD-VVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSE 156 (536)
T ss_pred CHHH-EEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCch
Confidence 6678 999999999999999998 8999983 99999999999999998763102367889999999999
Q ss_pred ChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCC---
Q 009868 145 FSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI--- 221 (523)
Q Consensus 145 ~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi--- 221 (523)
++++||+|+++|+||+|+++++ |++++|||.|+||| +.++|+|+++.++++|...+.|++++++.+|+
T Consensus 157 ~~~~kl~Wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~ 227 (536)
T TIGR01234 157 WFWAKILQITEEDPAIYQAADR----WIELADWIVAQLSG-----DIRRGRCTAGYKALWHESWGYPSASFFDELNPILN 227 (536)
T ss_pred hHHHHHHHHHhhChHHHHHHhh----hcCHHHHHHHHHhC-----CccccchhcccceeccccccCCCHHHHHHhcchhh
Confidence 9999999999999999999986 89999999999999 88999999999998877666669999999985
Q ss_pred ---CCCCCCCcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccc
Q 009868 222 ---PAEILPKIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVK 291 (523)
Q Consensus 222 ---~~~~LP~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~ 291 (523)
++++||+|+++++++|+|+. | |++|+||++|++|++|+++|+|+ ++|++++++|||.++.... +++..
T Consensus 228 ~~lp~~~~p~i~~~g~~~G~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~ 305 (536)
T TIGR01234 228 RHLPDKLFTDIWTAGEPAGTLTPEWAQRTG-LPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIG-DKQRA 305 (536)
T ss_pred hhhhhhcCCceecCCCcccccCHHHHHHhC-CCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEec-Ccccc
Confidence 78899999999999999963 5 88999999999999999999999 9999999999998865443 33332
Q ss_pred cCCCceeeeeeec-CCCCCceeEeccchhchhHHHHHHHHHcCCC-----------CCHHHHHHHHHhcC-CCCceEEEc
Q 009868 292 SKHGLLSTLAFKL-GPKAPTNYALEGSIAIAGAAVQWLRDSLGII-----------SSASEIEELALQVN-STGGVYFVP 358 (523)
Q Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~-----------~~~~~l~~~a~~~~-~~~gl~~~P 358 (523)
..+ +++.+ ++..++.|.++++++++|.+++|+++.+... +.|+.|++.+++.| ++++|+|+|
T Consensus 306 -~~~----~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP 380 (536)
T TIGR01234 306 -VPG----MCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALD 380 (536)
T ss_pred -CCc----eeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecc
Confidence 122 22221 1124678999999999999999999987421 23788888877764 889999999
Q ss_pred CCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHH
Q 009868 359 AFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNL 437 (523)
Q Consensus 359 ~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~ 437 (523)
||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|++++.|++ .|.+ +++|+++||+ ++|++
T Consensus 381 ~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~--------~~~i~~~GGg~a~s~~ 451 (536)
T TIGR01234 381 WFNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVP--------VEELMAAGGIARKNPV 451 (536)
T ss_pred hhccCCCCCCCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--------cceEEEeCCccccCHH
Confidence 999999999999999999999999999999999999999999999999987 5777 8999999999 99999
Q ss_pred HHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHh
Q 009868 438 LMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTF 516 (523)
Q Consensus 438 ~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~ 516 (523)
|+||+||+||+||++++..|++++|||++|++++|.|++++++.+.+.....++|+|++++++.| ++|++|+++|++.-
T Consensus 452 w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~ 531 (536)
T TIGR01234 452 IMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCSENAQRYEQLYARYQELAMSFG 531 (536)
T ss_pred HHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECCChhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998886666424578999999998877 57999999998866
Q ss_pred ch
Q 009868 517 NL 518 (523)
Q Consensus 517 ~~ 518 (523)
++
T Consensus 532 ~~ 533 (536)
T TIGR01234 532 QY 533 (536)
T ss_pred hc
Confidence 55
No 12
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=1.2e-88 Score=727.13 Aligned_cols=471 Identities=29% Similarity=0.452 Sum_probs=429.0
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
||||+|||++|++|+|.+|+++++.+.+++..++.+||.+||+++||+.+++++++++++ .+.++.+ |.+||+++|
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~-I~gIgvs~~ 76 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQD-IKGIGISGQ 76 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCccc-EEEEEEecC
Confidence 589999999999999999999999999999888999999999999999999999999987 4566678 999999999
Q ss_pred cceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCc
Q 009868 90 RETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDA 169 (523)
Q Consensus 90 ~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~ 169 (523)
++|+++||+ +|++++|++.|+|.|..++++++.+.+ +.+.+++.+|+...+.++++||+|+++|+|++|+++++
T Consensus 77 ~~g~v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~--- 150 (481)
T TIGR01312 77 MHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAEL--GDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAK--- 150 (481)
T ss_pred CceeEEECC-CcCCCccchhhhccchHHHHHHHHHhc--CHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhe---
Confidence 999999997 899999999999999999999998875 45678899999999999999999999999999999986
Q ss_pred eeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------CC
Q 009868 170 LFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------GW 243 (523)
Q Consensus 170 ~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------~~ 243 (523)
|++++|||.|+||| +.++|+|+||+||+||+++++|++++|+.+||++++||+|+++++++|+++. |
T Consensus 151 -~~~~~~yi~~~LtG-----~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~G- 223 (481)
T TIGR01312 151 -VMLPKDYLRYRLTG-----EYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLG- 223 (481)
T ss_pred -eeCchHHHhhhhcC-----CeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhC-
Confidence 89999999999999 8899999999999999999999999999999999999999999999999973 5
Q ss_pred CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchh
Q 009868 244 PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAG 322 (523)
Q Consensus 244 l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 322 (523)
|++|+||++|++|++|+++|+|+ ++|++++++|||+++...+ +++..++.+....+++. .|+.|.+++++.++|
T Consensus 224 l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g 298 (481)
T TIGR01312 224 LSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVT-DKPLPDPAGAVHGFCHA----LPGGWLPMGVTLSAT 298 (481)
T ss_pred CCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEec-CCcccCcccceeeeeee----cCCceEEEeEehhhH
Confidence 78999999999999999999999 9999999999999876554 34555544444444443 367899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 323 AAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 323 ~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
.+++|+++.++. .+|++|++++++.| ++++++|+|||.|+|.|+||+.+||+|+|++.+|+++|++||++|||||.+|
T Consensus 299 ~~~~w~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~ 377 (481)
T TIGR01312 299 SSLEWFRELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALR 377 (481)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998853 46888999888875 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||++||++|+|++||++|+||++++..|++++|||++|++++|.|++++++.
T Consensus 378 ~~~~~l~~~~~~~--------~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~ 449 (481)
T TIGR01312 378 DSLDILREAGGIP--------IQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCS 449 (481)
T ss_pred HHHHHHHHhcCCC--------cceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999998744566 89999999999999999999999999999999999999999999999999999999886
Q ss_pred cccCCCCCcEEeCCCCHHHHH-HHHHHHHHHH
Q 009868 482 SGERTKTSTTFKPVLNEEFRK-KKAESWCRAV 512 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~ 512 (523)
+.+. +..++|+|++++++.| ++|++|+++|
T Consensus 450 ~~~~-~~~~~~~P~~~~~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 450 EAVV-KQTESVLPIAENVEAYEELYERYKKLY 480 (481)
T ss_pred hhcc-CCCceECCCHHHHHHHHHHHHHHHHHh
Confidence 6765 5778999999998877 5699999875
No 13
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=3.2e-88 Score=719.43 Aligned_cols=453 Identities=23% Similarity=0.302 Sum_probs=396.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeee--eccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT--QFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
+|+||||+|||++|++|||.+|++++..+.+++ ...|.+||+||||++||+++++++++++++. ...+ |.+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~-----~~~~-I~~I 75 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL-----TECH-IRGI 75 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC-----Cccc-eEEE
Confidence 489999999999999999999999999999876 3467899999999999999999999998762 2357 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|||+|+++++++|+ +|+||+|+|+|+|.|+.++++++.+.+ +.++++++||+++.+.++++||+|+++|+||+|+++
T Consensus 76 ~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~ 152 (470)
T PRK10331 76 TVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYI--SAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQA 152 (470)
T ss_pred EEeccccceEEECC-CcCCccCceeecCCCcHHHHHHHHHhc--CHHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHh
Confidence 99999999999999 999999999999999999999999875 567899999999999999999999999999999999
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc---
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK--- 241 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~--- 241 (523)
++ |++++|||.||||| ++++|+|+||+|++||+++++|++++++.+||++++||+++++++++|+|+.
T Consensus 153 ~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a 223 (470)
T PRK10331 153 HA----WLFISSLINHRLTG-----EFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAA 223 (470)
T ss_pred hh----hcCHHHHHHHhhcC-----ccccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHH
Confidence 86 99999999999999 8999999999999999999999999999999999999999999999999963
Q ss_pred ---CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccCC----CceeeeeeecCCCCCceeEe
Q 009868 242 ---GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKH----GLLSTLAFKLGPKAPTNYAL 314 (523)
Q Consensus 242 ---~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 314 (523)
| |++|+||++|++|++|+++|+|+.+|++++++|||+++.... ++|..+.. +.... + +..++.|..
T Consensus 224 ~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~-~~~~~~~~~~~~~~~~~--~---~~~~~~~~~ 296 (470)
T PRK10331 224 ALLG-LPVGIPVISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRS-AQVDTSLLSQYAGSTCE--L---DSQSGLYNP 296 (470)
T ss_pred HHhC-CCCCCeEEEccccHHHHHhCCCCCCCCEEEecchhhhheeec-CCCccccccccccccee--c---cccCceeee
Confidence 4 789999999999999999999997799999999998865444 33433321 21111 1 112456655
Q ss_pred ccchhchhHHHHHHHHHcCC-CCCHHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHH
Q 009868 315 EGSIAIAGAAVQWLRDSLGI-ISSASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAV 392 (523)
Q Consensus 315 ~~~~~~~G~~l~w~~~~~~~-~~~~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv 392 (523)
++... .|.+++|++++|+. ...|++|++++++. |++++++|+|+|.|+| ||+|+||+.+|+++||+||+
T Consensus 297 ~~~~~-~g~~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAv 367 (470)
T PRK10331 297 GMQWL-ASGVLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAA 367 (470)
T ss_pred chhhH-HHHHHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHH
Confidence 54344 44599999998853 24588999988877 4889999999999887 89999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhcc
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
+|||||++|++++.|++..+.+ +++|+++||++||++|+||+|||||+||++++..|++++|||++|++++|
T Consensus 368 lEgia~~~~~~~~~l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 368 LEGLTAQLKRNLQVLEKIGHFK--------ASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--------CceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcC
Confidence 9999999999999998743556 89999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHhcccCCCCCcEEeCCCCHHHHHH
Q 009868 473 VFKEEEIFDSGERTKTSTTFKPVLNEEFRKK 503 (523)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~ 503 (523)
.|+|++++.+.|. +..++|+|++ +++.|+
T Consensus 440 ~~~~~~~a~~~~~-~~~~~~~P~~-~~~~y~ 468 (470)
T PRK10331 440 EFSSPEQARAQMK-YQYRYFYPQT-EPEFIE 468 (470)
T ss_pred CCCCHHHHHHHHh-hcceeECCCc-cHhhhh
Confidence 9999998866765 4568999994 455553
No 14
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-86 Score=710.61 Aligned_cols=483 Identities=30% Similarity=0.464 Sum_probs=427.3
Q ss_pred cCCceEEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCce
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLK 82 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~ 82 (523)
|+++|+||||+|||++|+++||.+ |++++..+.+++..+|.+||.||||++||+++++++++++++ ..+++.+ |.
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~-I~ 76 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDA-IA 76 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhh-ce
Confidence 456799999999999999999999 899999999999888999999999999999999999999987 4466778 99
Q ss_pred EEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHH
Q 009868 83 AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKE 162 (523)
Q Consensus 83 aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~ 162 (523)
|||||+|||+++++|+ +|+||+|+|+|+|.|+.++++++.+.+ +.++.+..||+++.+.++++||+|+++|+||+|+
T Consensus 77 aI~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~--~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~ 153 (502)
T COG1070 77 AIGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERL--GGEALYARTGLQAMPGFTAPKLLWLKENEPDLFA 153 (502)
T ss_pred EEEEeccccceEEECC-CCCCccccceecchhhHHHHHHHHhhc--cchhhhhhcCCCcCccccHHHHHHHHhcCcHHHH
Confidence 9999999999999999 999999999999999999999999986 4467778899999999999999999999999999
Q ss_pred HHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCC-CCCCCcccCCcccccccc
Q 009868 163 AIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA-EILPKIVSNSEIIGKIGK 241 (523)
Q Consensus 163 ~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~-~~LP~i~~~~~~~G~v~~ 241 (523)
|+++ |++++|||.|+||| ++++|+|+||+|+|||+++++|+.++|+.+|+++ ++||+++++++++|+|+.
T Consensus 154 k~~~----il~~~dyl~~rLTG-----~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~ 224 (502)
T COG1070 154 KAAK----ILLIKDYLRYRLTG-----EFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTP 224 (502)
T ss_pred hhhh----eechHHHHHHHHhC-----CcccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccH
Confidence 9986 99999999999999 9999999999999999999999999999999995 999999999999999974
Q ss_pred ------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEe
Q 009868 242 ------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYAL 314 (523)
Q Consensus 242 ------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (523)
| |++++||++|++|++++++|+|+ ++|++..++||+.++...+. .+..++.+....+++ ..++.|..
T Consensus 225 e~A~~~G-l~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 298 (502)
T COG1070 225 EAAEELG-LPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATD-KPLDDPRGSIYTFCL----GLPGWFIV 298 (502)
T ss_pred HHHHHhC-CCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeecc-ccccCCccceeeecc----cCCCeEEE
Confidence 4 88999999999999999999999 99999999999988765554 355554444333322 24677888
Q ss_pred ccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhc---CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHH
Q 009868 315 EGSIAIAGAAVQWLRDSLGIISSASEIEELALQV---NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARA 391 (523)
Q Consensus 315 ~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~---~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rA 391 (523)
.+...++|.+++|+++.++...++.++...+... +++.+++|+|||+|||.|.++|.+||.|.|++..|+++|++||
T Consensus 299 ~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ra 378 (502)
T COG1070 299 MGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARA 378 (502)
T ss_pred EEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHH
Confidence 8889999999999999988653454444433332 3678999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhc
Q 009868 392 VLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 392 v~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
++||++|.++..++.|++..|.+ +++|+++||+|||++|+||+||++|+||.++...|++++|+|++++.+.
T Consensus 379 vlEgva~~l~~~~~~l~~~~g~~--------~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 379 VLEGVAFALADGLEALEELGGKP--------PSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--------ccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHh
Confidence 99999999999999999877888 8899999999999999999999999999999989999999988888888
Q ss_pred cccC-ChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 472 GVFK-EEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 472 G~~~-~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
+.+. +.+++.+.+. ..+++.|++++.+.| +.|++|++.|+++...
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~y~~~~~~~~~~y~~~~~~ 497 (502)
T COG1070 451 GGIYDSAEGALKAVV--DARRIIPDPERAAAYQELYERYRALYQALLAL 497 (502)
T ss_pred CCCCccHHHHhhccc--cccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554 4455534432 378999999988777 5678999999998764
No 15
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.2e-85 Score=698.49 Aligned_cols=449 Identities=24% Similarity=0.337 Sum_probs=390.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeee--eccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT--QFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++||||+|||++|++|||.+|++++..+.+++ ...|.+||.||||++||+++++++++++.+ ..+++ |.+||
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~-I~aI~ 75 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKH-IRGIA 75 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhc-eEEEE
Confidence 68999999999999999999999999998866 456889999999999999999999999864 23567 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
+++|+++++++|+ +|+||+|+|+|+|+|+.++++++.+.+ +.++++++||+++.+.++++||+|+++|+||+|++++
T Consensus 76 ~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 152 (465)
T TIGR02628 76 VTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLL--DAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERMH 152 (465)
T ss_pred EeccccceEEECC-CCCCccccccccCcccHHHHHHHHHhh--CHHHHHHHhCCCccccchHHHHHHHHHhChHHHHHHH
Confidence 9999999999999 899999999999999999999999875 5678999999999999999999999999999999998
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc----
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK---- 241 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~---- 241 (523)
+ |++++|||.|+||| ++++|+|+||+|+|||+++++|++++|+.+||++++||+++++++++|+|+.
T Consensus 153 ~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~ 223 (465)
T TIGR02628 153 K----FVFISSMITHRLTG-----EFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAA 223 (465)
T ss_pred H----hhCcHHHHHHHHhC-----CcccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHH
Confidence 6 88999999999999 8999999999999999999999999999999999999999999999999973
Q ss_pred --CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchh
Q 009868 242 --GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIA 319 (523)
Q Consensus 242 --~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (523)
| |++|+||++|++|++|+++|+|+.+|++++++|||+++.... +.|..+..+....+.+.. ...++.|.......
T Consensus 224 ~~G-l~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ 300 (465)
T TIGR02628 224 MLG-LPVGVPVISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARS-QQVDTSLLSQYAGSTCEL-DSQAGLYNPAMQWL 300 (465)
T ss_pred HhC-CCCCCCEEecCccHHHHHhccCCCCCcEEEeccchhhheecc-CcCCCCcccccccccccc-ccCCceeeehhhhh
Confidence 4 788999999999999999999997799999999998765433 345544443322222211 12255666554444
Q ss_pred chhHHHHHHHHHcCCC----C-CHHHHHHHHHhc-CCCCceE-EEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHH
Q 009868 320 IAGAAVQWLRDSLGII----S-SASEIEELALQV-NSTGGVY-FVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAV 392 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~----~-~~~~l~~~a~~~-~~~~gl~-~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv 392 (523)
++| +++|+++.+... . .|++|++.++++ |++++++ |+|++. |.+||+|+||+.+|+++||+||+
T Consensus 301 ~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l~rAv 371 (465)
T TIGR02628 301 ASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHIYRAA 371 (465)
T ss_pred hhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCCCCCCHHHHHHHH
Confidence 444 899999977421 1 268889888877 5788998 888763 57899999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhcc
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
+|||||.+|++++.+++..+.+ +++|+++||+++|++|+||+||++|+||++++..|++++|||++|++++|
T Consensus 372 lEgia~~~r~~~e~l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 372 LEGLTAQLKRNLQMLEQIGQFK--------ASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--------cceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcC
Confidence 9999999999999998743456 89999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHhcccCCCCCcEEeCC
Q 009868 473 VFKEEEIFDSGERTKTSTTFKPV 495 (523)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~P~ 495 (523)
.|+|++++.+.+. +..++|+|+
T Consensus 444 ~~~~~~~a~~~~~-~~~~~~~P~ 465 (465)
T TIGR02628 444 EYNSPEEAQAQMH-PQYRYFYPQ 465 (465)
T ss_pred ccCCHHHHHHHhh-ccceeeCCC
Confidence 9999999866765 457789996
No 16
>PLN02669 xylulokinase
Probab=100.00 E-value=2.7e-80 Score=665.95 Aligned_cols=436 Identities=19% Similarity=0.251 Sum_probs=384.3
Q ss_pred cCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeec---cCCCCeEEeCHH----------HHHHHHHHHHHHHHHHH
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQF---YPEAGWVEHEPM----------EILESVRVCMAKALDKA 70 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~---~~~~g~~e~d~~----------~~~~~~~~~l~~~~~~~ 70 (523)
+.+.|+||||+|||++|++|||.+|+++++++++++.. ++.+|++||||+ .||+++..+++++.+
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~-- 82 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK-- 82 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH--
Confidence 34679999999999999999999999999999999844 345678999998 678999999999873
Q ss_pred hhCCCCcccCceEEEEccccceeEEeeCCCCccc-------------------cccccccccCCHHHHHHHHHhCCCChH
Q 009868 71 TADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPL-------------------YNAIVWMDARTSSVCRKLEKELPGGKT 131 (523)
Q Consensus 71 ~~~~~~~~~~I~aIgis~~~~~~v~~d~~~g~~l-------------------~~~i~w~D~R~~~~~~~~~~~~~~~~~ 131 (523)
++.++++ |.||++|+|+|+.|+||++.|+|| +|+++|+|.|+.++++++++.+ ++.+
T Consensus 83 --~~~~~~~-I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~-gg~~ 158 (556)
T PLN02669 83 --EKFPFHK-VVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAV-GGAA 158 (556)
T ss_pred --cCCChhh-EEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHc-CcHH
Confidence 3567788 999999999999999987568776 6899999999999999999886 4457
Q ss_pred HHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCce-eEeecchhcccccccCCCCC
Q 009868 132 HFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLD 210 (523)
Q Consensus 132 ~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~ 210 (523)
+++++||++.++.|+.+||+|+++|+||+|+++.+ |+.++|||.|+||| + ..+|+|+||+|+|||+++++
T Consensus 159 ~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~----i~~~~dyl~~~LtG-----~~~~~D~sdasg~~l~Di~~~~ 229 (556)
T PLN02669 159 ELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTER----ISLVSSFMASLLVG-----DYASIDETDGAGMNLMDIEKRC 229 (556)
T ss_pred HHHHHHCCcccccccHHHHHHHHHhChHHHHHHHh----hccHHHHHHHhhcC-----CCccccchhhhhhhhhccccCC
Confidence 89999999999999999999999999999999986 88999999999999 6 46999999999999999999
Q ss_pred CCHHHHhhcCCC-CCCCCCcccCCccccccccCC-----CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeee
Q 009868 211 WDKPTLETLGIP-AEILPKIVSNSEIIGKIGKGW-----PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILM 283 (523)
Q Consensus 211 W~~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~~~-----l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~ 283 (523)
|++++|+.+++. +++||+++++++++|+|+..+ |++||||++|+||++|+++|+|+ +||++.+++|||+++.+
T Consensus 230 Ws~~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~ 309 (556)
T PLN02669 230 WSKAALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFG 309 (556)
T ss_pred cCHHHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEE
Confidence 999999999544 378999999999999997422 88999999999999999999999 99999999999998766
Q ss_pred ecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCC
Q 009868 284 NTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNG 362 (523)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G 362 (523)
.++ .+.+++.+.+ +++. ..|+.|+.+++..++|.+++|+++.++ ..+|+.+++++++.| +++|++++||+.|
T Consensus 310 ~~~-~~~~~~~~~~--~~~~---~~~~~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~ 382 (556)
T PLN02669 310 ITR-EPQPSLEGHV--FPNP---VDPESYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEH 382 (556)
T ss_pred ecC-CCCCCCCcce--eeCc---cCCCCeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCc
Confidence 553 4555544432 3322 237889999999999999999999885 246888999887774 7889998999999
Q ss_pred CCCCC----CCCCCceeEEcCCCC---------CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEe
Q 009868 363 LFAPW----WRDDARGVCIGITRF---------TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVD 429 (523)
Q Consensus 363 ~r~P~----~~~~arg~~~gl~~~---------~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~ 429 (523)
|+.|+ +++.++|.|+|++.. |+++|++||++||++|++|.+++.|+ .+.+ +++|+++
T Consensus 383 e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~--~~~~--------~~~i~~~ 452 (556)
T PLN02669 383 EILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG--MPVP--------PKRIIAT 452 (556)
T ss_pred ccCCCCCCccchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCC--------CcEEEEE
Confidence 99996 567788999999887 79999999999999999999999995 2455 7999999
Q ss_pred cCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhc
Q 009868 430 GGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 430 GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
||+++|+.|+||+|||||+||++++..|++++|||++|+++.
T Consensus 453 GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~~ 494 (556)
T PLN02669 453 GGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHGW 494 (556)
T ss_pred cChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999954
No 17
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-80 Score=631.56 Aligned_cols=501 Identities=45% Similarity=0.694 Sum_probs=443.0
Q ss_pred CceEEEEecCCCCceEEEEc-CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d-~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.++++|||+||||+|++||| .+|+++..+..+++...|.+||+||||.++|+++++||+++.+.+...+..... |.+|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~-~~~i 83 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVG-ATCI 83 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccc-cEEE
Confidence 67999999999999999999 699999999999999999999999999999999999999999887655555566 8889
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|++.|+++.++|++.+|+|++++|.|+|.|+..++++++...+.........+|.++++.|+++||+||++|.|++....
T Consensus 84 gv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~ 163 (516)
T KOG2517|consen 84 GVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAK 163 (516)
T ss_pred EEEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHHHHHH
Confidence 99999999999999999999999999999999999999987521111123679999999999999999999999994444
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCce-eEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccC-
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG- 242 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~- 242 (523)
..+...|.++..|+.++||+.. . +.+|.+|+|++++||..+..||..+++.+||+.+.||++..+++++|.+..+
T Consensus 164 ~~~~~~~~~~~twl~~~~t~~~---~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~~ 240 (516)
T KOG2517|consen 164 EEGGFDLGTFDTWLATGLTGRS---SCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAGD 240 (516)
T ss_pred HhcccchhhhhhheeecCCccc---eeccccccccccccccchhhhhhhhhhhhhhCCCcccCCcccccccccccccccc
Confidence 4445556677777777777732 2 6899999999999999999999999999999999999999999999999755
Q ss_pred C-CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 243 W-PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 243 ~-l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
+ +++|+||.++.||++|+++|..+ ++|+.+.++||++++..+++..+....+|+++...|..+...+-.|.+++....
T Consensus 241 ~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~ 320 (516)
T KOG2517|consen 241 LGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAF 320 (516)
T ss_pred cccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccch
Confidence 2 77899999999999999999999 999999999999999988887777777899988888875433335899999999
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQV 400 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~ 400 (523)
+|..++|+++.++......++++++..+..+.+++|.|.|+|.|+|+|||++||+|.|++.+++..||.||++|+|+|++
T Consensus 321 ~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fqt 400 (516)
T KOG2517|consen 321 AGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQT 400 (516)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998876555667777787777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccc--cCChh
Q 009868 401 KDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV--FKEEE 478 (523)
Q Consensus 401 r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~--~~~~~ 478 (523)
|++|+.|++..+.+ +++++++||.++|++++|++||++|+||.++...|++++|||++|+.+.|. |.+.+
T Consensus 401 r~Il~am~~~~~~~--------i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~ 472 (516)
T KOG2517|consen 401 REILEAMERDGGHP--------ISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEE 472 (516)
T ss_pred HHHHHHHHHhcCCC--------cceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHH
Confidence 99999999865456 999999999999999999999999999999999999999999999999999 66666
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchhcc
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADL 521 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~~ 521 (523)
++. + ....++|+|+.+...+..+|+.|++++++.++|...
T Consensus 473 ~~~--~-~~~~~~~~P~~~~~~~~~ky~~w~~ave~~~~~~~~ 512 (516)
T KOG2517|consen 473 KAS--L-TGVGKVFRPNIDDKLLDKKYQIWLKAVERQLGYRRI 512 (516)
T ss_pred HHh--c-CCCcceecCCCCcHHHHHHHHHHHHHHHHHhhHHhh
Confidence 662 2 357899999998745557899999999999999653
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.3e-77 Score=635.28 Aligned_cols=428 Identities=21% Similarity=0.268 Sum_probs=362.2
Q ss_pred EEEecCCCCceEEEEcCC---CCEE-EEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 10 GAIDQGTTSTRFIIYDHQ---ARPI-GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~---g~i~-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++||+|||++|++|+|.+ |+++ .....+++...+++++.|||++.||+++.++++++... ..+ |.+||
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~-i~~Ig 72 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIA-PDSIG 72 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCC-ceEEE
Confidence 589999999999999987 5676 66777777788999999999999999999999998653 246 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
||+|+++++++|+ +|+||+|+|+|+|.|+.++++++.+.+ +.+++|++||+++.+.++++||+|+++|+|++|+|++
T Consensus 73 is~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~ 149 (454)
T TIGR02627 73 IDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSEL--GKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVA 149 (454)
T ss_pred EeccceeEEEEcC-CCCCccCceecCCCCCHHHHHHHHhhc--CHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHH
Confidence 9999999999999 999999999999999999999999875 5678999999999999999999999999999999998
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCC
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~ 245 (523)
+ |+.++|||.||||| +.++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|.+....+
T Consensus 150 ~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~gl- 219 (454)
T TIGR02627 150 H----FLLIPDYLNYRLTG-----KKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQG- 219 (454)
T ss_pred H----hCCHHHHHHHheeC-----CceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeecccC-
Confidence 6 89999999999999 8899999999999999999999999999999999999999999999999864215
Q ss_pred CCCcEEE-eccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhH
Q 009868 246 TGIPISG-CLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGA 323 (523)
Q Consensus 246 ~g~pV~~-g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (523)
.|+||++ |++|++|+++|+|+ ++|++++++|||+++...+ +.|..++.+....+.+ ....++.|.+.+... ++
T Consensus 220 ~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~- 294 (454)
T TIGR02627 220 NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFES-QTPITNEQALAANITN--EGGADGRYRVLKNIM-GL- 294 (454)
T ss_pred CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccC-CCCCCCHHHHHhcccc--ccccccEEEeecchh-hh-
Confidence 7999998 88999999999999 9999999999998765443 3444443221111111 012355666654443 33
Q ss_pred HHHHHHHHcCC---CCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCC-Cce------eEEcCCCCCCHHHHHHHHH
Q 009868 324 AVQWLRDSLGI---ISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDD-ARG------VCIGITRFTSKAHIARAVL 393 (523)
Q Consensus 324 ~l~w~~~~~~~---~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~-arg------~~~gl~~~~~~~~l~rAv~ 393 (523)
|+++.+.. ...|+++.+.+...|- |.|++.|++.|+|||. +++ .|+||+..|+++||+||++
T Consensus 295 ---W~~~~~~~~~~~~~~~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~ 366 (454)
T TIGR02627 295 ---WLLQRVCRERDINDLPALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIF 366 (454)
T ss_pred ---HHHHHHHhhhccccHHHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 66654431 2346666666654432 2356678899999995 444 4599999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccc
Q 009868 394 ESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 394 Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
|||||.+|++++.|++..+.+ +++|+++||+++|++|+||+||+||+||.+.. .|++++|||++|++++|.
T Consensus 367 Egva~~~r~~~e~l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 367 DSLALLYRQVLLELAELRGKP--------ISQLHIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDE 437 (454)
T ss_pred HHHHHHHHHHHHHHHHhhCCC--------cCEEEEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCC
Confidence 999999999999998754666 89999999999999999999999999998765 779999999999999999
Q ss_pred cCChhHH
Q 009868 474 FKEEEIF 480 (523)
Q Consensus 474 ~~~~~~a 480 (523)
|++++++
T Consensus 438 ~~~~~~~ 444 (454)
T TIGR02627 438 INDMAAF 444 (454)
T ss_pred cCCHHHH
Confidence 9999888
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=6.3e-77 Score=630.72 Aligned_cols=447 Identities=20% Similarity=0.252 Sum_probs=375.1
Q ss_pred EEEcCCCCEEE---EEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccccceeEEeeC
Q 009868 22 IIYDHQARPIG---SHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSK 98 (523)
Q Consensus 22 ~l~d~~g~i~~---~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~~~~~v~~d~ 98 (523)
+-+|.+|+-+. .+++++. .++.+++.+|||+.||+++.++++++... .++ |.+||||+|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~-~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~-I~~Igis~q~~~~v~lD~ 73 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNG-LHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIR-IDSIGIDTWGVDYVLLDK 73 (471)
T ss_pred eEEcCCCceEEEEEEEecCCC-CeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCC-ccEEEEcCCcccEEEECC
Confidence 34555554443 2445444 45789999999999999999999887542 357 999999999999999999
Q ss_pred CCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHH
Q 009868 99 STGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWL 178 (523)
Q Consensus 99 ~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l 178 (523)
+|+||+|+|+|+|.|+.++++++.+.+ +.+++|++||+++.+.++++||+|+++|+|++|+++++ |++++|||
T Consensus 74 -~G~pL~pai~w~D~Ra~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl 146 (471)
T PRK10640 74 -QGQRVGLPVSYRDSRTDGVMAQAQQQL--GKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAH----ALLIPDYF 146 (471)
T ss_pred -CCCCcCCceeccCCCCHHHHHHHHHhc--CHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhH----eecHHHHH
Confidence 899999999999999999999999885 56789999999999999999999999999999999986 89999999
Q ss_pred HHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCCCCCcEEE-eccch
Q 009868 179 IWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITGIPISG-CLGDQ 257 (523)
Q Consensus 179 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~~g~pV~~-g~gD~ 257 (523)
.|+||| ++++|+|+||+|+|||+++++||+++++.+||+.++||+++++++++|+++.. +..|+||++ |++|+
T Consensus 147 ~~~LTG-----~~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~-~g~g~pVv~~g~~D~ 220 (471)
T PRK10640 147 SYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICP-QGNEIPVVAVASHDT 220 (471)
T ss_pred HHHHhC-----CcceeecHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecc-cCCCCCEEEeCCCcH
Confidence 999999 89999999999999999999999999999999999999999999999998765 447899998 58999
Q ss_pred hhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCC--
Q 009868 258 HAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI-- 334 (523)
Q Consensus 258 ~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~-- 334 (523)
+|+++|+|+ ++|++++++|||+++...+ +.|..++.+......+. + ..++.|.+...+. | +|+++.++.
T Consensus 221 ~aa~~g~g~~~~g~~~~s~GT~~~~~~~~-~~p~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~--g---~W~~~~~~~~~ 292 (471)
T PRK10640 221 ASAVIASPLNDSDAAYLSSGTWSLMGFES-QTPFTNDTALAANITNE-G-GAEGRYRVLKNIM--G---LWLLQRVLQER 292 (471)
T ss_pred HHHhhccCCCCCCeEEEEeccHhhhheec-CCCcCCHHHHHhccCcc-C-CCCceEEEecchh--H---HHHHHHHHHHh
Confidence 999999999 9999999999998765444 34554433221111111 1 2356676665332 3 899997642
Q ss_pred -CCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCC-CCceeEEcCCCCC------CHHHHHHHHHhhhhhHHHHHHHH
Q 009868 335 -ISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRD-DARGVCIGITRFT------SKAHIARAVLESMCFQVKDVLDS 406 (523)
Q Consensus 335 -~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~-~arg~~~gl~~~~------~~~~l~rAv~Egia~~~r~~l~~ 406 (523)
..+|+++.+++++.|++++++ +| .|+|. ||| ++||+|+|++..| +++||+||++||+||.+|++++.
T Consensus 293 ~~~~~~~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~ 367 (471)
T PRK10640 293 QITDLPALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHE 367 (471)
T ss_pred ccCCHHHHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 245888888888888888887 58 79994 686 8999998777766 99999999999999999999999
Q ss_pred HHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCC
Q 009868 407 MQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486 (523)
Q Consensus 407 l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~ 486 (523)
|++..+.+ +++|+++||+++|++|+||+||++|+||.+.+. |++++|||++|++++|.|++++++ ++++.
T Consensus 368 l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~ 437 (471)
T PRK10640 368 LAQLRGEP--------FSQLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVS 437 (471)
T ss_pred HHHHhCCC--------cceEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHH
Confidence 98754666 899999999999999999999999999988764 899999999999999999999888 56553
Q ss_pred C--CCcEEeCCCCHHHHHHHHHHHHHHHHH
Q 009868 487 K--TSTTFKPVLNEEFRKKKAESWCRAVER 514 (523)
Q Consensus 487 ~--~~~~~~P~~~~~~~~~~y~~~~~~~~~ 514 (523)
. ..++|+|+++ .++.++|.+|+++++.
T Consensus 438 ~~~~~~~~~P~~~-~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 438 TNFPLTTFTPNPD-SEIARHVAQFQSLRQT 466 (471)
T ss_pred hcCCceEEcCCCh-HHHHHHHHHHHHHhcc
Confidence 2 4689999997 4667789999988765
No 20
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=8.3e-73 Score=572.69 Aligned_cols=477 Identities=23% Similarity=0.320 Sum_probs=409.5
Q ss_pred CCceEEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++.|++|||+||.|.|+++||.. |++++.+.+||+...+.++..||++.++|++++.++++++++ .++++.+ |++
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~-V~g 76 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPAD-VVG 76 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhH-eeE
Confidence 35799999999999999999985 999999999999999999999999999999999999999998 7899999 999
Q ss_pred EEEccccceeEEeeCCCCcccc---------ccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHh
Q 009868 84 IGLTNQRETTVLWSKSTGCPLY---------NAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMM 154 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~---------~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~ 154 (523)
|||+++ +|++++|+ +|+|+. ++|.|+|+|+.+++++++.. ..+++...|..+++.+-.+||+|++
T Consensus 77 IGvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~----~~~~L~~~GG~~SpEm~~PKlmwl~ 150 (544)
T COG1069 77 IGVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINAT----CHPVLDYYGGKISPEMMIPKLMWLK 150 (544)
T ss_pred EEEcce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhh----chHHHHhhCCccChhhhHHHHHHHH
Confidence 999999 99999999 899984 47899999999999999986 2458899999999999999999999
Q ss_pred hcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccC-CCCCCCHHHHhhcCCCC-----CCCC-
Q 009868 155 ENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNL-KTLDWDKPTLETLGIPA-----EILP- 227 (523)
Q Consensus 155 ~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~gi~~-----~~LP- 227 (523)
+|.|++|+++.+ |+.+.|||.|+||| ...-...++..-..|.. +++-|++++++.+|++. ++||
T Consensus 151 ~~~p~~~~~a~~----~fdl~D~l~~~ltG-----~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~ 221 (544)
T COG1069 151 REAPAVWERAAH----IFDLADWLTWKLTG-----SIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPE 221 (544)
T ss_pred hhChHHHHHhhh----hhhHHHHHHHHhhc-----chhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCc
Confidence 999999999985 99999999999999 33333334444456777 55569999999999862 3465
Q ss_pred CcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeee
Q 009868 228 KIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300 (523)
Q Consensus 228 ~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~ 300 (523)
++++.|+.+|.+++ | |++|+.|.+|..|.+|+++|++. +|+.+...+|||++.+..++ ++.+ .+|.|..+
T Consensus 222 ~i~~~g~~vg~Lt~e~A~~lG-L~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~-~~~~-v~GvwGpy 298 (544)
T COG1069 222 DIVPAGEPVGGLTPEAAQELG-LPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSE-KPRF-VPGVWGPY 298 (544)
T ss_pred ccccCCccccccCHHHHHHhC-CCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecC-Ccee-cCcccccc
Confidence 77889999999974 4 89999999999999999999998 99999999999988765543 4433 35776543
Q ss_pred eeecCCCCCceeEeccchhchhHHHHHHHHHcCC--------CC----C-------HHHHHHHHHhc-CCCCceEEEcCC
Q 009868 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI--------IS----S-------ASEIEELALQV-NSTGGVYFVPAF 360 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~--------~~----~-------~~~l~~~a~~~-~~~~gl~~~P~l 360 (523)
. +...|+.|.+||+++.+|..++||.+...- .. - ...|.+.+.+. |..++++++|+|
T Consensus 299 ~---~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f 375 (544)
T COG1069 299 D---GAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWF 375 (544)
T ss_pred c---cccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccc
Confidence 2 234699999999999999999999987421 11 1 12333334444 588999999999
Q ss_pred CCCCCCCCCCCCceeEEcCCCCCCHH---HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHH
Q 009868 361 NGLFAPWWRDDARGVCIGITRFTSKA---HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNL 437 (523)
Q Consensus 361 ~G~r~P~~~~~arg~~~gl~~~~~~~---~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~ 437 (523)
+|.|+|+-||+++|+|+|++++|+++ .+|||.+|+++|..|.++|.+++ .|.. |++|+++||..||++
T Consensus 376 ~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~--------Id~l~~sGG~~KN~l 446 (544)
T COG1069 376 NGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED-QGIA--------IDTLFASGGIRKNPL 446 (544)
T ss_pred cCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCCe--------eeEEEecCCcccCHH
Confidence 99999999999999999999999999 99999999999999999999987 6999 999999999999999
Q ss_pred HHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCC-CHHHHH-HHHHHHHHHHHHH
Q 009868 438 LMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVL-NEEFRK-KKAESWCRAVERT 515 (523)
Q Consensus 438 ~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~-~~~~~~-~~y~~~~~~~~~~ 515 (523)
|+|++||++|+||+++...++.++|+||++++|.|.|.|+.+|+++|.. ...+..|++ +...+| +.|++|++++...
T Consensus 447 lmql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~-~~~~~~~~~~~~~~~y~~lyr~y~~l~~~~ 525 (544)
T COG1069 447 LMQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSS-AVEKTLPPPPERAARYERLYRRYLQLHDDA 525 (544)
T ss_pred HHHHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhc-ccceecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888874 444555555 766777 4688888877654
Q ss_pred h
Q 009868 516 F 516 (523)
Q Consensus 516 ~ 516 (523)
.
T Consensus 526 ~ 526 (544)
T COG1069 526 E 526 (544)
T ss_pred h
Confidence 4
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=7.6e-52 Score=404.04 Aligned_cols=239 Identities=40% Similarity=0.671 Sum_probs=220.8
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|+||||+|||++|++|+|.+|+++...+.+++...+.+|+.||||++||+.+++++++++++ .+.++++ |.+|+||
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~-I~aI~is 76 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQ-IKAIGIS 76 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGG-EEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccce-eEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999998 4567788 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+|+++++++|+ +|+|++|+++|+|+|+.++++++.+. ...+++++.+|.++++.++++|++||++|+||+|+++++
T Consensus 77 ~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~- 152 (245)
T PF00370_consen 77 GQGHGLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEE--GSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAAK- 152 (245)
T ss_dssp E-SSEEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHH--THHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHHE-
T ss_pred cccCCcceecc-ccccccccccccccchhhHHHHHHhh--cCcceeeeeccccccccchHHHHHHHHHhCchhhhhhhh-
Confidence 99999999999 89999999999999999999999987 367899999999999999999999999999999999986
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|++++|||.|+||| +.++|+|+||+||+||+++++|++++++.+||+.++||+|+++++++|+++.
T Consensus 153 ---~~~~~dyl~~~LtG-----~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~~~a~~~ 224 (245)
T PF00370_consen 153 ---FLTLSDYLAYKLTG-----RAATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTPEAAKEL 224 (245)
T ss_dssp ---EEEHHHHHHHHHHS-----C-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEHHHHHHH
T ss_pred ---cccHHHHHHhhccc-----cccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCcEEEeccchhhhhhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLG 263 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g 263 (523)
| |++|+||++|++|++|+++|
T Consensus 225 G-l~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 225 G-LPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp T-STTTEEEEEEEEHHHHHHHH
T ss_pred C-CCCCCEEEEEchHHHHhhcC
Confidence 5 89999999999999999987
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=370.78 Aligned_cols=479 Identities=21% Similarity=0.263 Sum_probs=365.4
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCC----CC-------eEEeCHH-HHHHHHHHHHHHHHHHHhh
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPE----AG-------WVEHEPM-EILESVRVCMAKALDKATA 72 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~----~g-------~~e~d~~-~~~~~~~~~l~~~~~~~~~ 72 (523)
....+||+|++|+.+|++++|.+.+|+.+..+.+....|+ +| ..-..|- .|++++-- +++++++
T Consensus 7 ~~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDl----ll~kl~~ 82 (545)
T KOG2531|consen 7 PDRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDL----LLDKLRE 82 (545)
T ss_pred CCceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHH----HHHHHHH
Confidence 4456899999999999999999999999998888765552 22 2333454 56555543 4444444
Q ss_pred CCCCcccCceEEEEccccceeEEeeCCCCc-cc-------------------cccccccccCCHHHHHHHHHhCCCChHH
Q 009868 73 DGHNVDSGLKAIGLTNQRETTVLWSKSTGC-PL-------------------YNAIVWMDARTSSVCRKLEKELPGGKTH 132 (523)
Q Consensus 73 ~~~~~~~~I~aIgis~~~~~~v~~d~~~g~-~l-------------------~~~i~w~D~R~~~~~~~~~~~~~~~~~~ 132 (523)
++.+..+ |.||+-++|.|+.|.|.+ .++ .| .....|+|..+..++++++..+ |+.++
T Consensus 83 ~~~d~~k-V~aiSGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~V-GG~~~ 159 (545)
T KOG2531|consen 83 AGFDLSK-VMAISGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAV-GGAQE 159 (545)
T ss_pred cCCCHHH-hhhhcccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHh-ccHHH
Confidence 6888888 999999999999999976 332 22 2346899999999999999998 79999
Q ss_pred HHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCC
Q 009868 133 FLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWD 212 (523)
Q Consensus 133 ~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~ 212 (523)
+.+.||.+.+..|+.++|+.+.+.+||.|+++.+ +-.+++|++..|-|+ ...+|+|++|++.|+|+++++|+
T Consensus 160 la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~Ter----ISLVSsFlaSlllG~----~a~id~sDgsGMNL~dIr~k~ws 231 (545)
T KOG2531|consen 160 LAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTER----ISLVSSFLASLLLGS----YAPIDESDGSGMNLLDIRKKKWS 231 (545)
T ss_pred HHHhhcchhhhhcccHHHHHHHHhChHhhhccce----eehHHHHHHHHHhcc----ccceecccccCchHHHHhhhhhh
Confidence 9999999999999999999999999999999986 888999999999995 67799999999999999999999
Q ss_pred HHHHhhcCCC-CCCCCCcccCCccccccccCC-----CCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecC
Q 009868 213 KPTLETLGIP-AEILPKIVSNSEIIGKIGKGW-----PITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTG 286 (523)
Q Consensus 213 ~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~~~-----l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~ 286 (523)
+++|+.+--+ +++|...+++..+.|+|...+ +++++.|++-.||+.+++.|.-..++++.+|+|||..+.+.+.
T Consensus 232 ~~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~ 311 (545)
T KOG2531|consen 232 KALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTK 311 (545)
T ss_pred HHHHhhhChhHHHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcC
Confidence 9999988533 346778888999999998653 7899999999999999999998877999999999998887775
Q ss_pred ccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCCCCC
Q 009868 287 EEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNGLFA 365 (523)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~ 365 (523)
++.+.+.|- .+|+. ..++.|+..-+..||+.+-+-+|+... ..+|+.+++...+.| |.+|.+=+=|=.+|-.
T Consensus 312 -~~~p~~egH--vf~hP---~~~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIv 384 (545)
T KOG2531|consen 312 -EYHPSPEGH--VFCHP---TDPNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIV 384 (545)
T ss_pred -CCCCCCCcc--eeccC---CCccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEeccccccc
Confidence 455555543 34432 347789999999999999888887543 468999999777665 6555422211134555
Q ss_pred CC-------CCCCC-ceeE--EcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc
Q 009868 366 PW-------WRDDA-RGVC--IGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN 435 (523)
Q Consensus 366 P~-------~~~~a-rg~~--~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s 435 (523)
|. |+-.- .+.. .++-...+|.+-+||++||-+...|...+.|-- ...+ ..+|+++||.|+|
T Consensus 385 P~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~--~~~~-------~~rilvtGGAS~N 455 (545)
T KOG2531|consen 385 PSVPKGTLRFIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPLGF--KSNP-------PTRILVTGGASRN 455 (545)
T ss_pred CCCCccceEEEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccccC--CCCC-------CceEEEecCcccc
Confidence 51 11110 0000 133445579999999999999999998887732 2221 7999999999999
Q ss_pred HHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccC-Chh-HHhcc-----cC-CCCCcEEeCCCCHHHHH-HHHH
Q 009868 436 NLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK-EEE-IFDSG-----ER-TKTSTTFKPVLNEEFRK-KKAE 506 (523)
Q Consensus 436 ~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~-~~~-~a~~~-----~~-~~~~~~~~P~~~~~~~~-~~y~ 506 (523)
+...|++|||||.||++.+..+++++|+|+-|++|.-... ... ..... .. .+..-..+|.+++.+.| .+.+
T Consensus 456 ~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~~e~Y~~ll~ 535 (545)
T KOG2531|consen 456 EAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSANWEIYGPLLK 535 (545)
T ss_pred HHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999863211 000 00000 00 01223456777766666 3566
Q ss_pred HHHHHHHH
Q 009868 507 SWCRAVER 514 (523)
Q Consensus 507 ~~~~~~~~ 514 (523)
+++++.+.
T Consensus 536 ~~~e~e~~ 543 (545)
T KOG2531|consen 536 RLSELEDT 543 (545)
T ss_pred HHHHHHHh
Confidence 77766554
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=100.00 E-value=6.1e-34 Score=268.77 Aligned_cols=189 Identities=39% Similarity=0.663 Sum_probs=160.4
Q ss_pred eEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCC---CCC----HHHHHH
Q 009868 271 AKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI---ISS----ASEIEE 343 (523)
Q Consensus 271 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~---~~~----~~~l~~ 343 (523)
+++++|||+++.+.. ++|+.+.++++..+... ..++.|.++++.+++|.+++|+++.++. ..+ ++.+..
T Consensus 1 a~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVS-SEPVISPPGFWNPFADH---VIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAE 76 (198)
T ss_dssp EEEEESSSEEEEEEE-TSTTTTSSSSEEEEEEE---TSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHH
T ss_pred CEEEehhhhHHhhEe-CccccCCCeeEEeecCc---CCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHH
Confidence 478999999987744 56776667776554411 2467899999999999999999998643 111 133332
Q ss_pred --HHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhcccccccccc
Q 009868 344 --LALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAK 421 (523)
Q Consensus 344 --~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~ 421 (523)
.....+++++++|+|+|.|+|+|+||++++|+|+|++.+|+++|++||++||++|.+|++++.|++..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~------- 149 (198)
T PF02782_consen 77 LEAAASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP------- 149 (198)
T ss_dssp HHHHHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-------
T ss_pred HHhhhccCcccceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc-------
Confidence 22334578899999999999999999999999999999999999999999999999999999999866888
Q ss_pred CccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhc
Q 009868 422 SEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 422 ~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
+++|+++||+++|++|+|++||++|+||++++..|++++|||++|++|+
T Consensus 150 -~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 150 -IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp -ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred -ceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999874
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.45 E-value=3.9e-12 Score=124.19 Aligned_cols=121 Identities=24% Similarity=0.286 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQV 400 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~ 400 (523)
+|..++=+.+.++. +++++++++.+... |.=.+.++..+- ....+..+....+++++++++++++++.+
T Consensus 126 tg~f~e~~a~~l~~--~~~e~~~~~~~~~~-------~~~~~~~c~vf~--~s~vi~~l~~g~~~~di~~~~~~~va~~i 194 (248)
T TIGR00241 126 TGRFLEVTARRLGV--SVEELGSLAEKADR-------KAKISSMCTVFA--ESELISLLAAGVKKEDILAGVYESIAERV 194 (248)
T ss_pred ccHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CCCcCCEeEEEe--chhHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 56777777777775 57788777654311 111112221110 12233345556789999999999999999
Q ss_pred HHHHHHHHhhhccccccccccCcc-EEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHH
Q 009868 401 KDVLDSMQKDAVEKGVIKDAKSEF-LLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 401 r~~l~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~l 466 (523)
+..+..+ . ++ +|+++||+++|+.|.|.+++.++.||.+++.++ .+|+|||++
T Consensus 195 ~~~~~~~------~--------~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 195 AEMLQRL------K--------IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHhhc------C--------CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 9765332 2 34 899999999999999999999999999998874 899999974
No 25
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.75 E-value=2.5e-07 Score=93.05 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=88.3
Q ss_pred EeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHH
Q 009868 313 ALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAV 392 (523)
Q Consensus 313 ~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv 392 (523)
++.-|...+|.-++-..+.++. +.+++.+++.+... |.--+.+|-.+-. .-++.=+....+++|++.++
T Consensus 295 MNDKCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~~-------pv~ISS~CtVFAE--SEVIslla~G~~reDIaAGL 363 (432)
T TIGR02259 295 MNDRCAAGCGRYLGYIADEMNM--GLHELGPLAMKSSK-------PARINSTCTVFAG--AELRDRLALGDKREDILAGL 363 (432)
T ss_pred ecCcccccchHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CCCcCCcceEEeh--HHHHHHHHCCCCHHHHHHHH
Confidence 3344555678899988888876 56777776654311 1111122211100 00111134467999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-----CCceeecCCCC-ccHHHHHHH
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-----GSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-----g~pv~~~~~~e-~~alGaA~l 466 (523)
..+|+-.+...+..+. +. -+.|.++||.++|+.+.+.+.+.+ +.+|.+++.++ .+|+|||+.
T Consensus 364 ~~SIA~Rv~s~l~r~~---~i---------~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~ 431 (432)
T TIGR02259 364 HRAIILRAISIISRSG---GI---------TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEF 431 (432)
T ss_pred HHHHHHHHHHHHhccc---CC---------CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHh
Confidence 9999987766654432 22 357999999999999999999999 57788877554 789999987
Q ss_pred H
Q 009868 467 A 467 (523)
Q Consensus 467 A 467 (523)
|
T Consensus 432 a 432 (432)
T TIGR02259 432 A 432 (432)
T ss_pred C
Confidence 5
No 26
>PRK13317 pantothenate kinase; Provisional
Probab=98.25 E-value=3.5e-05 Score=76.05 Aligned_cols=138 Identities=19% Similarity=0.082 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEc-----CCCCCCHHHHHHHHHhh
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIG-----ITRFTSKAHIARAVLES 395 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~g-----l~~~~~~~~l~rAv~Eg 395 (523)
||..+.=+.+.+....+++++.+++.+-..+.-=+.+-.+.|...+....+.+.+.|+ +.....++|++++++..
T Consensus 126 GGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaasl~~~ 205 (277)
T PRK13317 126 GGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILAGVIGL 205 (277)
T ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHHHHHHH
Confidence 4445544555553336799999998763211111223344443222234566666655 34457899999999999
Q ss_pred hhhHHHHHHHHHHhhhccccccccccCccEEEEec-CccccHHHHHHHHhhc---CCceeecCCC-CccHHHHHHHHH
Q 009868 396 MCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDG-GATVNNLLMQIQADLL---GSPVIRPADI-ETTALGAAFAAG 468 (523)
Q Consensus 396 ia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~G-G~a~s~~~~qi~Advl---g~pv~~~~~~-e~~alGaA~lA~ 468 (523)
++..+-...-.+.+. .. +++|+++| |.++|+.+++.+++.+ +.++.+++.+ -.+|+|||+.|.
T Consensus 206 v~~~I~~lA~~~ar~--~~--------~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 206 VGEVITTLSIQAARE--KN--------IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHh--cC--------CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 988877664433332 23 67899999 6889999999999999 7888888754 488999999864
No 27
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.95 E-value=6.1e-05 Score=76.22 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=65.3
Q ss_pred ccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCce
Q 009868 3 KAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLK 82 (523)
Q Consensus 3 ~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~ 82 (523)
+++..+++|||||.|++|++++|.+|+++...+.+++. ..+.+.+.+.+.+.+++++++ .+ ...+ +.
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~---~~-~~~~-~i 68 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT--------PDPEEAILEAILALVAELLKQ---AQ-GRVA-II 68 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC--------CCchhHHHHHHHHHHHHHHHh---cC-CcCc-eE
Confidence 45567899999999999999999999999988888872 233357888888888888776 22 2234 66
Q ss_pred EEEEccccceeEEeeCCCC-ccccccccccc
Q 009868 83 AIGLTNQRETTVLWSKSTG-CPLYNAIVWMD 112 (523)
Q Consensus 83 aIgis~~~~~~v~~d~~~g-~~l~~~i~w~D 112 (523)
+||+++ ++.+|. .. ....|.+.|.+
T Consensus 69 GIgi~~----pg~~~~-~~~~~~~~~~~~~~ 94 (314)
T COG1940 69 GIGIPG----PGDVDN-GTVIVPAPNLGWWN 94 (314)
T ss_pred EEEecc----ceeccC-CcEEeecCCCCccc
Confidence 677766 566665 22 23345556654
No 28
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.92 E-value=6.3e-05 Score=73.82 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=58.1
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.+++.... ... +.+|||+
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~-~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGV-QGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCC-CceEEEE
Confidence 36999999999999999999999987776654 236777777777766665332 123 5678888
Q ss_pred cccceeEEeeCCCCccccccc-cccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAI-VWMD 112 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i-~w~D 112 (523)
. +.++|.++|....+.+ .|.+
T Consensus 64 ~----pG~vd~~~g~i~~~~~~~w~~ 85 (256)
T PRK13311 64 I----PGLPNADDGTVFTANVPSAMG 85 (256)
T ss_pred e----cCcEECCCCEEEccCCCcccC
Confidence 7 3466864565443333 3654
No 29
>PRK09698 D-allose kinase; Provisional
Probab=97.89 E-value=8.6e-05 Score=74.71 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=60.9
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
+..+++|||+|.|++|++++|.+|+++.+.+.+++. ..+++. .+.+.+.+++++++ .+ .+ |.+|
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~---~~---~~-i~gi 65 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRR---FN---AR-CHGI 65 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHH---cC---CC-eeEE
Confidence 456899999999999999999999999877666541 123444 77778888888765 22 46 9999
Q ss_pred EEccccceeEEeeCCCCcccc-cccc
Q 009868 85 GLTNQRETTVLWSKSTGCPLY-NAIV 109 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~-~~i~ 109 (523)
||+. +.++|.++|..+. +.+.
T Consensus 66 gia~----pG~vd~~~g~i~~~~~~~ 87 (302)
T PRK09698 66 VMGF----PALVSKDRRTVISTPNLP 87 (302)
T ss_pred EEeC----CcceeCCCCEEEecCCCC
Confidence 9998 4467874555443 3344
No 30
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.86 E-value=0.00018 Score=70.79 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=83.7
Q ss_pred hchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhh
Q 009868 319 AIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCF 398 (523)
Q Consensus 319 ~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~ 398 (523)
..+|.-|+=..+.++. +.++|.+++..... + |+--+.+|-.+-. .-++.=+.....++|+++++.++++-
T Consensus 159 AGTGrFLE~~A~~Lgi--~leel~~~a~~~~~-~-----p~~Iss~CtVFAe--Sevi~l~~~G~~~edI~aGl~~sia~ 228 (293)
T TIGR03192 159 AGTGRGMEVISDLMQI--PIADLGPRSFDVET-E-----PEAVSSICVVFAK--SEALGLLKAGYTKNMVIAAYCQAMAE 228 (293)
T ss_pred ccccHHHHHHHHHcCC--CHHHHHHHHHhcCC-C-----CCCcCCcceEecc--HhHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3468888888888876 46777776522110 0 1111123221110 00111134467999999999999997
Q ss_pred HHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCcee-ecC-CCCccHHHHHHHHHH
Q 009868 399 QVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVI-RPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 399 ~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~-~~~-~~e~~alGaA~lA~~ 469 (523)
.+...+. + .+.. +.|+++||.++|+.+.+.+.+.|+++|. .+. ..-.+|+|||++|..
T Consensus 229 rv~~~~~---~-~~i~---------~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 229 RVVSLLE---R-IGVE---------EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHhc---c-cCCC---------CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 6544333 2 2333 5699999999999999999999999998 444 345889999999854
No 31
>PRK09557 fructokinase; Reviewed
Probab=97.84 E-value=8.9e-05 Score=74.56 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=60.7
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+.||||+|.|++|++++|.+|+++.+.+.+++ .++++++.+.+.+.++++... . .. +.+|||+
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~-~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA---T----GQ-RGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh---c----CC-ceEEEec
Confidence 46899999999999999999999987766554 236777888887777776543 1 24 7789998
Q ss_pred cccceeEEeeCCCCcccccccccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
. +.++|+++|..+.+...|.
T Consensus 64 ~----pG~vd~~~g~i~~~~~~~~ 83 (301)
T PRK09557 64 I----PGSISPYTGLVKNANSTWL 83 (301)
T ss_pred C----cccCcCCCCeEEecCCccc
Confidence 8 3467865676655444563
No 32
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.81 E-value=0.0001 Score=74.27 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=60.2
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++... . .. +.+|||+
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~-~~~igia 63 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR---F----GC-KGSVGIG 63 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh---c----CC-cceEEEe
Confidence 36899999999999999999999987766543 235788888888888776543 1 23 5578888
Q ss_pred cccceeEEeeCCCCcccccccc-cccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAIV-WMDA 113 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~-w~D~ 113 (523)
. +.++|.++|....+.+. |.+.
T Consensus 64 ~----pG~vd~~~g~~~~~~~~~w~~~ 86 (303)
T PRK13310 64 I----PGMPETEDGTLYAANVPAASGK 86 (303)
T ss_pred C----CCcccCCCCEEeccCcccccCC
Confidence 8 34678656665444343 6543
No 33
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.74 E-value=0.00016 Score=73.37 Aligned_cols=86 Identities=14% Similarity=0.260 Sum_probs=64.3
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+|||+|.|+++++++|.+|+++.+.+.+++ .+++++.+.+.+.+++++++ .+....+ |.+|||+.
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~-i~gIgva~- 65 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHE-IVAIGIGA- 65 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccc-eEEEEEec-
Confidence 589999999999999999999987655432 36788889999999888876 3445567 99999988
Q ss_pred cceeEEeeCCCCcccc-cccccccc
Q 009868 90 RETTVLWSKSTGCPLY-NAIVWMDA 113 (523)
Q Consensus 90 ~~~~v~~d~~~g~~l~-~~i~w~D~ 113 (523)
..++|.++|.... +.+.|.+.
T Consensus 66 ---pG~vd~~~g~~~~~~~~~w~~~ 87 (318)
T TIGR00744 66 ---PGPVNRQRGTVYFAVNLDWKQE 87 (318)
T ss_pred ---cccccCCCCEEEecCCCCCCCC
Confidence 3466864565433 33457654
No 34
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.73 E-value=0.00012 Score=73.06 Aligned_cols=126 Identities=23% Similarity=0.270 Sum_probs=88.3
Q ss_pred eccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEc------CCCCCCHHH
Q 009868 314 LEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIG------ITRFTSKAH 387 (523)
Q Consensus 314 ~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~g------l~~~~~~~~ 387 (523)
++.|...+|.-++-+.+.++. +.+++.+++.....+ +-| +.+| .+|.. +....+++|
T Consensus 257 N~~CAAGtGrFLE~~A~~Lgv--~v~E~~~~A~~~~~~------v~i-~S~C--------aVF~eSevi~~~~~G~~~Ed 319 (396)
T COG1924 257 NDKCAAGTGRFLEVIARRLGV--DVEELGKLALKATPP------VKI-NSRC--------AVFAESEVISALAEGASPED 319 (396)
T ss_pred ccccccccchHHHHHHHHhCC--CHHHHHHHHhcCCCC------ccc-CCee--------EEEehHHHHHHHHcCCCHHH
Confidence 344555679999999998876 678888887654110 111 1121 12211 344578999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccE-EEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHH
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL-LRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAF 465 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~ 465 (523)
+..++.++++-++.. .+.+ ..+ ++. |++.||.+.|..+...+.+.+|++|.+++..+ .+|+|||+
T Consensus 320 I~AGl~~Sv~~~v~~---~~~~--~~~--------i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL 386 (396)
T COG1924 320 ILAGLAYSVAENVAE---KVIK--RVD--------IEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAAL 386 (396)
T ss_pred HHHHHHHHHHHHHHH---HHhh--ccC--------CCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHH
Confidence 999999888876544 2222 122 333 99999999999999999999999999988544 78999999
Q ss_pred HHHH
Q 009868 466 AAGL 469 (523)
Q Consensus 466 lA~~ 469 (523)
+|..
T Consensus 387 ~a~~ 390 (396)
T COG1924 387 IAKE 390 (396)
T ss_pred HHhh
Confidence 8753
No 35
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.70 E-value=0.024 Score=59.82 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhh---hccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeec
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKD---AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP 453 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~---~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~ 453 (523)
-.+++++-+|.+.-.+++.++.+.+. .+... ..+..|+++||+|+-+.+.++++++|+.||.+.
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~-----~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~ 359 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKH-----HLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-----cCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence 45677777778877777777554332 13221 116789999999999999999999999999874
No 36
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.65 E-value=0.00036 Score=71.39 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=86.5
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhh
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESM 396 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egi 396 (523)
|...+|..|+-..+.++. +.++|.+++.+... +.+ -+ +.++-.+-. ...+.=+....+++|++.++..+|
T Consensus 272 CAAGTGrFLE~~A~~Lgi--~ieEl~~lA~~~~~-~pv----~I-sS~CtVFae--SevIsll~~G~~~eDIaAGl~~SI 341 (404)
T TIGR03286 272 CAGASGRFLEMTAKRLGV--DITELGKLALKGMP-EKV----RM-NSYCIVFGI--QDLVTALAEGASPEDVAAAACHSV 341 (404)
T ss_pred ccccCcHHHHHHHHHhCC--CHHHHHHHHHhCCC-CCC----Cc-cCccccccc--HhHHHHHHCCCCHHHHHHHHHHHH
Confidence 344578889888888865 67888887754310 000 01 112211100 011111233578999999999999
Q ss_pred hhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHHH
Q 009868 397 CFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFAA 467 (523)
Q Consensus 397 a~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~lA 467 (523)
+-++... .+++ .+.. +.|+++||.++|+.+...+.+.+|.++.+++.++ .+|+|||++|
T Consensus 342 a~rv~~~--l~~~-~~i~---------~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 342 AEQVYEQ--QLQE-IDVR---------EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred HHHHHHH--Hhhc-CCCC---------CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 9887642 1222 2332 5699999999999999999999999999988665 7899999987
No 37
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.62 E-value=0.00025 Score=65.38 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=63.8
Q ss_pred EEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcccc
Q 009868 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQR 90 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~~ 90 (523)
|||+|+++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++..+. .. . +|||+.
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~-------~~-~-gIgi~~-- 59 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP----------TSPEELLDALAELIERLLADY-------GR-S-GIGISV-- 59 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHH-------TC-E-EEEEEE--
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhc-------cc-c-cEEEec--
Confidence 79999999999999999999998777664 578899999999999988773 12 3 888887
Q ss_pred ceeEEeeCCCCcccc-ccccccccCC
Q 009868 91 ETTVLWSKSTGCPLY-NAIVWMDART 115 (523)
Q Consensus 91 ~~~v~~d~~~g~~l~-~~i~w~D~R~ 115 (523)
+.++|.++|..+. |...|.+...
T Consensus 60 --pG~v~~~~g~i~~~~~~~~~~~~l 83 (179)
T PF00480_consen 60 --PGIVDSEKGRIISSPNPGWENIPL 83 (179)
T ss_dssp --SSEEETTTTEEEECSSGTGTTCEH
T ss_pred --cccCcCCCCeEEecCCCCcccCCH
Confidence 4578875555553 4466887543
No 38
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.54 E-value=0.0051 Score=60.51 Aligned_cols=135 Identities=17% Similarity=0.084 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC--CCCCCCCCceeEEc-C-----CCCCCHHHHHHHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF--APWWRDDARGVCIG-I-----TRFTSKAHIARAV 392 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r--~P~~~~~arg~~~g-l-----~~~~~~~~l~rAv 392 (523)
||.++-=+...+....+++++.++|++-...+-=+.+-.+.|.. .+--..+..++-+| + .....++|+++++
T Consensus 131 GGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiAaSL 210 (279)
T TIGR00555 131 GGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIAASL 210 (279)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHHHHH
Confidence 44444345555544568999999987532111112233444421 11123455666667 3 3456799999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecC-ccccHHHHHHHHhhcC---CceeecCC-CCccHHHHHH
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGG-ATVNNLLMQIQADLLG---SPVIRPAD-IETTALGAAF 465 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG-~a~s~~~~qi~Advlg---~pv~~~~~-~e~~alGaA~ 465 (523)
+..|+.++-.+--..... .. +++|++.|| ...++..++.++..+. .....+++ .-.+|+|||+
T Consensus 211 l~mV~~nIg~lA~~~a~~--~~--------~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 211 LGLIGNNIGQIAYLCALR--YN--------IDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHH--cC--------CCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 999999876654332221 22 689999999 5578999999999886 44555664 4478899986
No 39
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.50 E-value=0.0012 Score=64.14 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=79.7
Q ss_pred hchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhh
Q 009868 319 AIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCF 398 (523)
Q Consensus 319 ~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~ 398 (523)
..+|.-|+-..+.++. +.++|.+++.+...+ +.+ +.+|..+-. .-++.=+.....++|++.++.++++-
T Consensus 131 AGTG~FLe~~A~~L~i--~leel~~~a~~~~~~------~~i-ss~CtVFae--Sevi~~~~~G~~~edI~aGl~~sia~ 199 (262)
T TIGR02261 131 SGSGQFLENIARYLGI--AQDEIGSLSQQADNP------EKV-SGICAVLAE--TDVINMVSRGISAPNILKGIHESMAD 199 (262)
T ss_pred ccccHHHHHHHHHhCC--CHHHHHHHHhcCCCC------CCc-CCCceEEch--hhHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3468888888888876 567787776543111 011 122211110 00111133457999999999999998
Q ss_pred HHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-Cc----eeecC-CCCccHHHHHHHH
Q 009868 399 QVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SP----VIRPA-DIETTALGAAFAA 467 (523)
Q Consensus 399 ~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~p----v~~~~-~~e~~alGaA~lA 467 (523)
.+...+..+ +.. -++|+++||.++|+.+.+.+.+.|+ .+ |.+++ ..-.+|+|||++|
T Consensus 200 r~~~~~~~~----~~~--------~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 200 RLAKLLKSL----GAL--------DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHhcc----CCC--------CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 765554433 222 2469999999999999999999984 23 33333 3347899999864
No 40
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.29 E-value=0.0011 Score=66.30 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=49.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
++|||+|.|+++++++|.+|+++.+.+.+++ ...+++++.+.+.+.++++.. + +.+|||+.
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~----------~-~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP--------ASQTPEALRQALSALVSPLQA----------Q-ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCC--------CCCCHHHHHHHHHHHHHHhhh----------c-CcEEEEeC
Confidence 6899999999999999999999987766654 123567777777766665432 4 67788888
Q ss_pred ccceeEEeeC
Q 009868 89 QRETTVLWSK 98 (523)
Q Consensus 89 ~~~~~v~~d~ 98 (523)
. .++|.
T Consensus 64 p----G~vd~ 69 (291)
T PRK05082 64 T----GIIND 69 (291)
T ss_pred c----ccccC
Confidence 3 35564
No 41
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.15 E-value=0.0015 Score=67.04 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=50.1
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.+.+++|||+|+|++|++++| +++++.....++. ++ .+.+.+++++++++ .|+..++ |..|
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~d-i~~i 202 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME-DNEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLED-VEAI 202 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc-CCeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccc-eeEE
Confidence 355899999999999999998 5688776544321 22 33456666677665 5666678 9999
Q ss_pred EEccccceeE
Q 009868 85 GLTNQRETTV 94 (523)
Q Consensus 85 gis~~~~~~v 94 (523)
++++.+...+
T Consensus 203 ~~TGyGR~~i 212 (404)
T TIGR03286 203 GTTGYGRFTI 212 (404)
T ss_pred EeeeecHHHH
Confidence 9988655443
No 42
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.14 E-value=0.0016 Score=64.12 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=45.3
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
++++|||+|+|++|++|+|. ++++.....++. .+|.+ .+.+++++++++ .|...++ |..+++
T Consensus 32 m~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg----------~~~~~---~a~~~l~~~l~~---~g~~~~~-v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG----------NNSPD---SAKNALQGIMDK---IGMKLED-INYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC-CEEEEEEeecCC----------CCHHH---HHHHHHHHHHHH---cCCcccc-eEEEEE
Confidence 48899999999999999994 566654443332 23333 455666677666 4555567 888888
Q ss_pred cccc
Q 009868 87 TNQR 90 (523)
Q Consensus 87 s~~~ 90 (523)
++.+
T Consensus 94 TGyG 97 (293)
T TIGR03192 94 TGYG 97 (293)
T ss_pred ECcc
Confidence 7754
No 43
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.14 E-value=0.0016 Score=53.61 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeee
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEF 38 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~ 38 (523)
.+||||+|+|.+|++++|.+|+++...+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~ 32 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIP 32 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEecCEEEEE
Confidence 3789999999999999999999987665543
No 44
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=97.06 E-value=0.00064 Score=62.53 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=60.7
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+|||+|+|++-++++|.+..++...+.++. |++....+.+++++++.+ .+.++.+ |..|.++++
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~-i~~v~~gTT 65 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSD-IDRVRHGTT 65 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhh-CcEEEeccH
Confidence 799999999999999998778887777654 345666788888888776 4566778 999999998
Q ss_pred cceeEEeeCCCCccc
Q 009868 90 RETTVLWSKSTGCPL 104 (523)
Q Consensus 90 ~~~~v~~d~~~g~~l 104 (523)
..+-.++.. +|.++
T Consensus 66 ~~tNAl~e~-~g~~v 79 (176)
T PF05378_consen 66 VATNALLER-KGARV 79 (176)
T ss_pred HHHHHHHhc-cCCCc
Confidence 777666665 56443
No 45
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0018 Score=63.37 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCH-HHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEP-MEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++.|+||||-|+|+++++|.|.+|+++......-. ....++ +.-++.+.+++++++.+ .|.++++ |.+
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpA-------N~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~-i~~ 71 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPA-------NIQLVGKEEAVRNIKDAIREALDE---AGLKPDE-IAA 71 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCCcEEEEeccCCc-------eecccchHHHHHHHHHHHHHHHHh---cCCCHHH-hCc
Confidence 46799999999999999999999999987543211 123345 78888999999999877 6777777 554
Q ss_pred E
Q 009868 84 I 84 (523)
Q Consensus 84 I 84 (523)
+
T Consensus 72 ~ 72 (301)
T COG2971 72 I 72 (301)
T ss_pred e
Confidence 4
No 46
>CHL00094 dnaK heat shock protein 70
Probab=97.04 E-value=0.0013 Score=72.96 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=46.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccccCC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGVFKE 476 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~~~~ 476 (523)
++.|+++||.+|.|.+.++++++||.++.. .+..|+.|+|||+.|+...|.+++
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~ 383 (621)
T CHL00094 329 IDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKD 383 (621)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccc
Confidence 889999999999999999999999987655 346679999999999988775443
No 47
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.98 E-value=0.0026 Score=61.81 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=45.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEE-EEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPI-GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+++|||+|+|++|++|+|.+++.+ ......++. . ..+| .+...+++++++++ .++...+ |..|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~----~---~~~~---~~~~~~~l~~~~~~---~g~~~~~-i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI----R---QRDP---FKLAEDAYDDLLEE---AGLAAAD-VAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC----C---CCCH---HHHHHHHHHHHHHH---cCCChhh-eEEEEE
Confidence 689999999999999999655422 222222221 0 1234 23455666677666 5665568 999999
Q ss_pred ccccce
Q 009868 87 TNQRET 92 (523)
Q Consensus 87 s~~~~~ 92 (523)
++.+..
T Consensus 68 TGYGR~ 73 (262)
T TIGR02261 68 TGEGES 73 (262)
T ss_pred ECCchh
Confidence 886553
No 48
>PRK00292 glk glucokinase; Provisional
Probab=96.80 E-value=0.0028 Score=64.17 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=48.4
Q ss_pred ceEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+++||||||+|++|++++|. +++++...+.+++ + ++.+.+.+.+++++. .+ .+ +.+||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~----~~~~~~~l~~~l~~~--~~---~~-~~gig 60 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------D----YPSLEDAIRAYLADE--HG---VQ-VRSAC 60 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------C----CCCHHHHHHHHHHhc--cC---CC-CceEE
Confidence 47899999999999999995 5666665555433 1 112444444554420 11 25 88888
Q ss_pred EccccceeEEeeCCCCccccccccccc
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMD 112 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D 112 (523)
|+. +.++|. + +...+.+.|.+
T Consensus 61 Ig~----pG~vd~-~-~i~~~n~~w~~ 81 (316)
T PRK00292 61 FAI----AGPVDG-D-EVRMTNHHWAF 81 (316)
T ss_pred EEE----eCcccC-C-EEEecCCCccc
Confidence 888 457776 3 33333345754
No 49
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.80 E-value=0.0044 Score=69.03 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=45.8
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccccC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~~~ 475 (523)
++.|+++||++|.|.+.+++.++||.++.. .+..|+.|+|||+.|+.-.+..+
T Consensus 329 Id~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~ 382 (668)
T PRK13410 329 IDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELK 382 (668)
T ss_pred CcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccccc
Confidence 889999999999999999999999986544 45778999999999998776443
No 50
>PRK13321 pantothenate kinase; Reviewed
Probab=96.75 E-value=0.0038 Score=61.19 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-+-..++-|.+..+...++.+++..+.+ -.|+++||-+ ++++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~---------~~vi~TGG~a------~~l~~~~~~~~~~--~~~Lvl~ 245 (256)
T PRK13321 183 KSTVSSIQSGLYYGYAGLVEGIVARIKAELGGP---------PRVIATGGFA------SLIAKESRCFDHV--DPDLLLE 245 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCcH------HHHhhcCCCccEE--CCCcHHH
Confidence 467888888999999999999999988765543 4699999965 3344444544443 3556677
Q ss_pred HHHHHHH
Q 009868 462 GAAFAAG 468 (523)
Q Consensus 462 GaA~lA~ 468 (523)
|-..++.
T Consensus 246 GL~~~~~ 252 (256)
T PRK13321 246 GLRILYQ 252 (256)
T ss_pred HHHHHHH
Confidence 7777654
No 51
>PLN02920 pantothenate kinase 1
Probab=96.74 E-value=0.084 Score=53.97 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=87.0
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC---CCCCCCCCceeEEc--CCC-----CCCHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF---APWWRDDARGVCIG--ITR-----FTSKA 386 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r---~P~~~~~arg~~~g--l~~-----~~~~~ 386 (523)
++.-||..+-=+..++....+|+++-++|.+=.-.+-=+.+-.+.|.. .|--..++.++-|| ... +.+++
T Consensus 192 GTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~e 271 (398)
T PLN02920 192 GTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPE 271 (398)
T ss_pred ccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHH
Confidence 344456665555555555678999999887421111112344455421 12234556666666 321 35699
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccH-HHHHHHHhhc------CCceeecC-CCCc
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNN-LLMQIQADLL------GSPVIRPA-DIET 458 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~-~~~qi~Advl------g~pv~~~~-~~e~ 458 (523)
|++|+++--|++++-++--...+.. . +++|+++|...+++ ..++.++-.. ++....++ ..-.
T Consensus 272 Dia~SLL~mVs~nIgqiA~L~A~~~--~--------ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYl 341 (398)
T PLN02920 272 DVARSLLRMISNNIGQISYLNALRF--G--------LKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFL 341 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--C--------CCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchh
Confidence 9999999999999887654443332 3 78999999999887 6666565554 23333444 4558
Q ss_pred cHHHHHHH
Q 009868 459 TALGAAFA 466 (523)
Q Consensus 459 ~alGaA~l 466 (523)
+|+||++.
T Consensus 342 GAlGAfl~ 349 (398)
T PLN02920 342 GALGAFMS 349 (398)
T ss_pred HHHHHHHh
Confidence 89999764
No 52
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.74 E-value=0.0025 Score=63.07 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=49.9
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
||||.|+|++|++|+|.+|+++.+....-. .....+.++..+.+.+++++++++. +..+.+ |..+.++.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~------n~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~-i~~~~~g~ 69 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGA------NYNSVGFEEAMENIKEAIEEALSQA---GLSPDD-IAAICIGA 69 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-T------THHHHHHHHHHHHHHHHHHHHHHHH---TTSTTC-CCEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCC------CCCCCCcchhhhHHHHHHHHHHHHc---CCCccc-cceeeeeE
Confidence 699999999999999999998876543221 1112456778888889999998874 555566 76665444
No 53
>PRK12408 glucokinase; Provisional
Probab=96.73 E-value=0.0024 Score=65.18 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCceEEEEcCCCCE------EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARP------IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSG 80 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i------~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (523)
.++|++|||+|++|.+++|.+|++ +...+.+++ +. +.+.+.+++++++ ..+
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~-----------~~----~~~~~~i~~~~~~-------~~~- 72 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCA-----------DY----PSLAAILADFLAE-------CAP- 72 (336)
T ss_pred ccEEEEEcChhhhheeEEeccCCccccccccceeEecCC-----------Cc----cCHHHHHHHHHhc-------CCC-
Confidence 347999999999999999988873 333222221 11 1233444455432 125
Q ss_pred ceEEEEccccceeEEeeCCCCcccccccccc
Q 009868 81 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 81 I~aIgis~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+.+|||+.-+. .++ +|....+.+.|.
T Consensus 73 ~~~igIg~pG~---~~~--~g~v~~~nl~w~ 98 (336)
T PRK12408 73 VRRGVIASAGY---ALD--DGRVITANLPWT 98 (336)
T ss_pred cCEEEEEecCC---ceE--CCEEEecCCCCc
Confidence 77888888432 244 576665555684
No 54
>PRK13318 pantothenate kinase; Reviewed
Probab=96.70 E-value=0.0053 Score=60.25 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-+...++-|.+..+...++++++..+.+ -+|+++||.++ +++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~---------~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~ 245 (258)
T PRK13318 183 KNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKD---------PKVIATGGLAP------LFAEESDTIDIV--DPDLTLK 245 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCchH------HHHhccCCCcEE--CcccHHH
Confidence 467888999999999999999999988765433 46999999863 344455555544 3455666
Q ss_pred HHHHHHH
Q 009868 462 GAAFAAG 468 (523)
Q Consensus 462 GaA~lA~ 468 (523)
|-..++.
T Consensus 246 Gl~~~~~ 252 (258)
T PRK13318 246 GLRLIYE 252 (258)
T ss_pred HHHHHHH
Confidence 7665544
No 55
>PRK03011 butyrate kinase; Provisional
Probab=96.68 E-value=0.4 Score=49.32 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=47.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC--CceeecC-CC--CccHHH
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG--SPVIRPA-DI--ETTALG 462 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg--~pv~~~~-~~--e~~alG 462 (523)
.++.++|-.++.+...+-.+....+.+ ++.|+++||.+.++.+.+.+.+.+. .||.+.. .. ++.++|
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~G 340 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEG 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHH
Confidence 456678888888887777765443224 7899999999998888777666654 3666643 22 355666
Q ss_pred HHH
Q 009868 463 AAF 465 (523)
Q Consensus 463 aA~ 465 (523)
|+.
T Consensus 341 A~r 343 (358)
T PRK03011 341 ALR 343 (358)
T ss_pred HHH
Confidence 543
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.56 E-value=0.0077 Score=60.51 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=48.2
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
...++||||.|+|.+|++|.++++.++......++ -.|. ..++++++++++ +....+ |.++
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~----------g~p~-----~~~~l~~~le~l---~~~~~~-I~~~ 193 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK----------GRPI-----AEKALKEALEEL---GEKLEE-ILGL 193 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC----------CChh-----HHHHHHHHHHHc---ccChhe-eeee
Confidence 45689999999999999999987766654443332 1222 245566666663 444467 9999
Q ss_pred EEccccceeE
Q 009868 85 GLTNQRETTV 94 (523)
Q Consensus 85 gis~~~~~~v 94 (523)
++++.+...+
T Consensus 194 ~~TGYGR~~v 203 (396)
T COG1924 194 GVTGYGRNLV 203 (396)
T ss_pred eeecccHHHh
Confidence 9999765433
No 57
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.51 E-value=0.0039 Score=60.46 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAF 465 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~ 465 (523)
++++..++.+.-.++..++ + .+ ++.|+++||+|+.+.+.+.+.+.||.||.++. +.+++|+|||+
T Consensus 173 ~~i~~~~~~i~~~i~~~l~---~---~~--------~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIE---G---QG--------VKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CC--------CCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 4555555555555554443 1 23 78999999999999999999999999998866 45688999986
No 58
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.49 E-value=0.0059 Score=63.41 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=49.3
Q ss_pred eEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCC------eEE-eC-HHHHHHHHHHHHHHHHHHHh-hCCCCc
Q 009868 8 FIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAG------WVE-HE-PMEILESVRVCMAKALDKAT-ADGHNV 77 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g------~~e-~d-~~~~~~~~~~~l~~~~~~~~-~~~~~~ 77 (523)
|-++||||||.+.+.++|. +|++++..+..+|+...... ++. .+ .+++-+.+.+.+.++++++. +.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 6789999999999999996 89999999998886532211 111 11 34455555555555555432 257888
Q ss_pred ccCceEEEEcc
Q 009868 78 DSGLKAIGLTN 88 (523)
Q Consensus 78 ~~~I~aIgis~ 88 (523)
++ |..|.|++
T Consensus 82 ~~-I~~i~i~G 91 (412)
T PF14574_consen 82 ED-IYEIVIVG 91 (412)
T ss_dssp GG-EEEEEEEE
T ss_pred HH-eEEEEEEe
Confidence 88 88887766
No 59
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.41 E-value=0.0087 Score=66.46 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=44.9
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC-ceeecCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS-PVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|-|.+.+++.+.|++ |+...+..|+.|+|||+.|+.-.+.
T Consensus 354 Id~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 354 INDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred CCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc
Confidence 89999999999999999999999997 4555667899999999999976654
No 60
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.37 E-value=0.0077 Score=59.42 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCC-CccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADI-ETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~-e~~alGaA 464 (523)
.++++..+|-+.-.++..++ + .. ++.|+++||+|+-+-+.+++++.||.||.++..+ .++|+|+|
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~---~---~~--------~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa 264 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIE---G---QD--------VEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIA 264 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHh---c---CC--------CCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHH
Confidence 45556666555555544433 1 24 7899999999999999999999999999997755 58999999
Q ss_pred HH
Q 009868 465 FA 466 (523)
Q Consensus 465 ~l 466 (523)
+.
T Consensus 265 ~~ 266 (267)
T PRK15080 265 LS 266 (267)
T ss_pred hh
Confidence 74
No 61
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.34 E-value=0.0063 Score=67.73 Aligned_cols=78 Identities=10% Similarity=-0.021 Sum_probs=52.0
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
..+||||||+|++|++++|.+|+++...+.+++. ++.+.+.+++++++ .+. .+ +.+|||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~---------------~~~~~~~i~~~l~~---~~~--~~-~~~igi 76 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGEITQIRVYPGAD---------------YPTLTDAIRKYLKD---VKI--GR-VNHAAI 76 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCcccceeEEecCC---------------CCCHHHHHHHHHHh---cCC--CC-cceEEE
Confidence 3589999999999999999999987776655531 12345555666554 221 35 888888
Q ss_pred ccccceeEEeeCCCCcccccccccc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+. +.++|. +. ...+.+.|.
T Consensus 77 g~----pGpVd~-~~-~~~~nl~w~ 95 (638)
T PRK14101 77 AI----ANPVDG-DQ-VRMTNHDWS 95 (638)
T ss_pred EE----ecCccC-Ce-eeecCCCcE
Confidence 88 567775 32 223344686
No 62
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.21 E-value=0.016 Score=64.40 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=44.8
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.||.++.. .+..++.|+|||+.|+.-.|.
T Consensus 327 id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~ 378 (627)
T PRK00290 327 IDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD 378 (627)
T ss_pred CcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC
Confidence 899999999999999999999999987654 457789999999999876653
No 63
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.12 E-value=0.017 Score=63.81 Aligned_cols=51 Identities=24% Similarity=0.252 Sum_probs=44.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 325 i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 325 IDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred CcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999977665 456789999999999876554
No 64
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.08 E-value=0.014 Score=64.46 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=43.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|.++||++|.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+.
T Consensus 329 i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 380 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGS 380 (602)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTS
T ss_pred cceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccc
Confidence 889999999999999999999999987765 446788999999999876653
No 65
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.2 Score=54.95 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHhhhhhHHH----HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceee-cCCCC
Q 009868 383 TSKAHIARAVLESMCFQVK----DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIE 457 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r----~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e 457 (523)
|-..+|.|+-+|.+...+- ...+...+..+.++ -+++.|.++||.+|-|...+.+++.++++... ++..|
T Consensus 271 ~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~-----~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpde 345 (579)
T COG0443 271 DLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEK-----SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDE 345 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-----hhCceEEEccceeccHHHHHHHHHHhCccccccCCccH
Confidence 3455666666666554432 11222212234431 23899999999999999999999999966655 56788
Q ss_pred ccHHHHHHHHHHhccccC
Q 009868 458 TTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 458 ~~alGaA~lA~~~~G~~~ 475 (523)
+.|+|||+.|+.-.|..+
T Consensus 346 ava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 346 AVALGAAIQAAVLSGEVP 363 (579)
T ss_pred HHHHHHHHHHHhhcCccc
Confidence 999999999999877644
No 66
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=95.97 E-value=0.013 Score=59.94 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCcc-EEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF-LLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAA 464 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA 464 (523)
+++...++.+.-.++..++......... .++ .|+++||+|+-+.+.+++++.|+.||.+.. ..++.|+|||
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~~~~-------~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa 318 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPELSAD-------IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTG 318 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccHh-------hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHH
Confidence 4444555555555555554332100011 144 699999999999999999999999998876 6678899999
Q ss_pred HHHHH
Q 009868 465 FAAGL 469 (523)
Q Consensus 465 ~lA~~ 469 (523)
+.+..
T Consensus 319 ~~~~~ 323 (336)
T PRK13928 319 KMLEN 323 (336)
T ss_pred HHHhc
Confidence 98765
No 67
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=95.94 E-value=0.02 Score=63.01 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=44.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G 472 (523)
++.|+++||.+|.|.+.+++.+.|++++.. .+..++.|+|||+.|+.-.+
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999987765 45678999999999987543
No 68
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=95.91 E-value=0.026 Score=62.51 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=44.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++++.||.++.. .+..++.|+|||+.|+.-.+.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~ 380 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGN 380 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccc
Confidence 889999999999999999999999976543 457789999999999876553
No 69
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.13 Score=51.48 Aligned_cols=133 Identities=21% Similarity=0.197 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCCceEEEcC-CCCCCCCCCCCCCceeEEcCCC----------------
Q 009868 320 IAGAAVQWLRDSLGIIS-SASEIEELALQVNSTGGVYFVPA-FNGLFAPWWRDDARGVCIGITR---------------- 381 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~-~~~~l~~~a~~~~~~~gl~~~P~-l~G~r~P~~~~~arg~~~gl~~---------------- 381 (523)
..|.+++-+.+.+++.. --..++++|++- ...-+.+|+ .. +.+...=+|.||..
T Consensus 159 A~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G--~~~~~~fP~~~~------~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~ 230 (342)
T COG0533 159 AAGEAFDKVARLLGLGYPGGPAIEKLAKKG--DPDAFEFPRPMV------KGKNLDFSFSGLKTAVLRLLKKLKQKEELN 230 (342)
T ss_pred hhhHHHHHHHHHhCCCCCCcHHHHHHHhcC--CCCceeCCcccc------CCCCcceehHhHHHHHHHHHHhcccccccc
Confidence 46899999999888632 224788888753 222266665 21 11222346666533
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCCCc
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADIET 458 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~e~ 458 (523)
..+++++..+..|.+.-.+.+..++.-+..+ .+++.++||.+.|..+++++..+. |..++.++. +-
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~----------~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~-~l 299 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG----------KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL-EL 299 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh-Hh
Confidence 1247779999888887777776665444333 678999999999999999999977 344666542 22
Q ss_pred cHHHHHHHHHHhc
Q 009868 459 TALGAAFAAGLAI 471 (523)
Q Consensus 459 ~alGaA~lA~~~~ 471 (523)
+.==+||+|..|.
T Consensus 300 CtDNaaMIA~ag~ 312 (342)
T COG0533 300 CTDNAAMIAYAGL 312 (342)
T ss_pred ccchHHHHHHHHH
Confidence 2223456665554
No 70
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=95.79 E-value=0.034 Score=61.43 Aligned_cols=50 Identities=30% Similarity=0.305 Sum_probs=43.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G 472 (523)
++.|+++||+++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+
T Consensus 313 id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~ 363 (599)
T TIGR01991 313 IKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAG 363 (599)
T ss_pred CCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999976554 45778999999999987654
No 71
>PRK11678 putative chaperone; Provisional
Probab=95.67 E-value=0.054 Score=57.50 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-CceeecCCCCc
Q 009868 380 TRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SPVIRPADIET 458 (523)
Q Consensus 380 ~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~~~~~e~ 458 (523)
...-++.++-.. ++.+.-.+..+++..-+..+.. ++.|+++||.++.|.+.+++...|+ .|+...+..++
T Consensus 366 ~~~ItR~efe~i-i~~~l~ri~~~i~~~L~~a~~~--------~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~s 436 (450)
T PRK11678 366 ATEISQQGLEEA-ISQPLARILELVQLALDQAQVK--------PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGS 436 (450)
T ss_pred ceeeCHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC--------CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcch
Confidence 344566665433 3445555555555433335666 7899999999999999999999996 68888888889
Q ss_pred cHHHHHHHHHH
Q 009868 459 TALGAAFAAGL 469 (523)
Q Consensus 459 ~alGaA~lA~~ 469 (523)
.|.|+|+.|..
T Consensus 437 Va~Gla~~a~~ 447 (450)
T PRK11678 437 VTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 72
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.66 E-value=0.038 Score=61.80 Aligned_cols=51 Identities=27% Similarity=0.214 Sum_probs=45.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC
Confidence 899999999999999999999999987654 567889999999999976654
No 73
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.52 E-value=0.029 Score=62.69 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=44.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+.
T Consensus 368 i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 368 LNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC
Confidence 899999999999999999999999987654 457789999999999876553
No 74
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.26 E-value=0.054 Score=60.41 Aligned_cols=51 Identities=27% Similarity=0.227 Sum_probs=43.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcC-Cceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLG-SPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.|+ .++.. .+..++.|+|||+.|+.-.+.
T Consensus 328 id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 328 IDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred CcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC
Confidence 7899999999999999999999997 55544 467789999999999876553
No 75
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=95.22 E-value=0.033 Score=56.85 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=40.3
Q ss_pred EEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 425 ~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
.|+++||+++.+.+.+.+.+.++.||.+.. ..++.|+|||+.+..
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999876 566789999998765
No 76
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=95.21 E-value=0.13 Score=52.23 Aligned_cols=140 Identities=19% Similarity=0.076 Sum_probs=78.4
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC--CCCCCCCCceeEEcC-C------CCCCHHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF--APWWRDDARGVCIGI-T------RFTSKAH 387 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r--~P~~~~~arg~~~gl-~------~~~~~~~ 387 (523)
++..||..+-=+..++....+|+++.++|++=.-.+-=+.+-.+.|.. .+.-.++..++-+|- . ...+++|
T Consensus 183 Gs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~D 262 (341)
T PF03630_consen 183 GSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKED 262 (341)
T ss_dssp EES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHH
T ss_pred ccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHH
Confidence 344455555545555433468999999886421111112233333332 111234455554442 1 1347899
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHH---hhc---CCceeecC-CCCcc
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQA---DLL---GSPVIRPA-DIETT 459 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~A---dvl---g~pv~~~~-~~e~~ 459 (523)
++|+++.-|++++-++.-...+..+ +++|+++|...+ ++..++.++ +-. +.....+. ..-.+
T Consensus 263 ia~sll~mv~~nIg~la~l~A~~~~----------~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~g 332 (341)
T PF03630_consen 263 IAKSLLNMVSNNIGQLAYLHAKIHG----------VKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLG 332 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhH
Confidence 9999999999999887655544333 789999999986 567788888 433 23334444 55588
Q ss_pred HHHHHHH
Q 009868 460 ALGAAFA 466 (523)
Q Consensus 460 alGaA~l 466 (523)
|+||.+.
T Consensus 333 alGa~l~ 339 (341)
T PF03630_consen 333 ALGAFLK 339 (341)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999764
No 77
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=95.10 E-value=0.19 Score=51.53 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC-ceeecCC-----CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS-PVIRPAD-----IE 457 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~-----~e 457 (523)
+++|+++-+.|=.|.++.+.++.+. .+ +++|+++|||++|+.+++.+...+.. +|...+. .-
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~----~~--------~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~ 325 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFP----PQ--------PDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDA 325 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-----TT---------EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC----CC--------CceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHH
Confidence 5899999999988888877776653 23 68999999999999999999999875 8876531 11
Q ss_pred ccHHHHHHHHHHhc-cccCChhH
Q 009868 458 TTALGAAFAAGLAI-GVFKEEEI 479 (523)
Q Consensus 458 ~~alGaA~lA~~~~-G~~~~~~~ 479 (523)
--|+.=|++|...+ |...++..
T Consensus 326 ~EA~aFA~La~~~~~g~~~~lp~ 348 (364)
T PF03702_consen 326 KEAMAFAWLAYRRLNGLPNNLPS 348 (364)
T ss_dssp HHHHHHHHHHHHHHCT---S-HH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCc
Confidence 23666777777665 33334433
No 78
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.00 E-value=0.051 Score=60.67 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=43.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcC-Cce-eecCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLG-SPV-IRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg-~pv-~~~~~~e~~alGaA~lA~~~~G 472 (523)
++.|.++||.+|.|.+.+++.+.|+ .++ ...+..|+.|+|||+.|+.-.+
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 8999999999999999999999996 455 4456788999999999987654
No 79
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.93 E-value=0.046 Score=55.77 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=40.1
Q ss_pred EEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 425 ~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
.|+++||+|+-|.+.+.+++.++.||.+.. +.++.|+|||+++..
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 699999999999999999999999999876 566889999998654
No 80
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=94.89 E-value=0.04 Score=56.18 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=40.2
Q ss_pred cE-EEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 424 FL-LRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 424 ~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
+. |+++||+++-+.+.+.+++.++.|+.+.. ..++.++|||+++..
T Consensus 281 ~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 281 DRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred hCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 44 99999999999999999999999998875 456788999998754
No 81
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=94.69 E-value=0.1 Score=49.28 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=50.6
Q ss_pred eEEEEecCCCCceEEEEcCCCC-EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCC-CcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR-PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGH-NVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~-i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~I~aIg 85 (523)
.+|+||+|+|++|++++...|. .....+..++ .|.. ......+++++.+.+++.+.++. .+. +..+ ..-+|
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~--ip~~-~~~~~~~~lFd~ia~~i~~f~~~---~~~~~~~~-~l~lG 136 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYK--IPEE-LMNGSGEELFDFIADCIAEFLKE---HNLESRDE-KLPLG 136 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HH-HHTSBHHHHHHHHHHHHHHHHHH---TTTTSTTS-EEEEE
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeecccc--CChH-HhcCCcccHHHHHHHHHHHHHHH---hccccccc-ccceE
Confidence 5789999999999999997554 3333333333 2210 11223488999999999999887 332 2334 55566
Q ss_pred EccccceeEEeeC
Q 009868 86 LTNQRETTVLWSK 98 (523)
Q Consensus 86 is~~~~~~v~~d~ 98 (523)
++- -.+++.
T Consensus 137 fTF----SFP~~q 145 (206)
T PF00349_consen 137 FTF----SFPVEQ 145 (206)
T ss_dssp EEE----ESSEEE
T ss_pred EEE----EEEEEe
Confidence 665 346654
No 82
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=94.69 E-value=0.12 Score=52.95 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC--CCcc-
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD--IETT- 459 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~--~e~~- 459 (523)
.+++|+++-+.|=.|.++.+.+..+. .. .++|+++|||++|+.+++.+...+..+|...+. -..-
T Consensus 259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~--------~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da 326 (365)
T PRK09585 259 LSPEDVQATLTELTAASIARAVRRLP----PG--------PDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDA 326 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc----CC--------CCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhH
Confidence 47899999998877777776664432 23 578999999999999999999999756665443 1222
Q ss_pred --HHHHHHHHHHhc
Q 009868 460 --ALGAAFAAGLAI 471 (523)
Q Consensus 460 --alGaA~lA~~~~ 471 (523)
|+.-|++|...+
T Consensus 327 ~EA~aFA~La~~~l 340 (365)
T PRK09585 327 KEALAFAWLAVRTL 340 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 455556655443
No 83
>PLN02902 pantothenate kinase
Probab=94.62 E-value=1.3 Score=49.96 Aligned_cols=141 Identities=13% Similarity=0.012 Sum_probs=86.8
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCC-C--CCCCCCCCceeEEc--CC-----CCCCHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL-F--APWWRDDARGVCIG--IT-----RFTSKA 386 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~-r--~P~~~~~arg~~~g--l~-----~~~~~~ 386 (523)
++.-||..+-=+..++-...+|+++-++|.+=..++-=+.+-.+.|. . .+--..++-++-|| .. .+.+++
T Consensus 241 GTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~e 320 (876)
T PLN02902 241 GTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPE 320 (876)
T ss_pred ccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHH
Confidence 34445666555555554457899999988652111111334455542 1 11123455555566 21 135799
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcC------CceeecC-CCCc
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLG------SPVIRPA-DIET 458 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg------~pv~~~~-~~e~ 458 (523)
|++|+++--|++++-++--...+.. . +++|+++|...+ ++.-++.++-.+. +....+. ..-.
T Consensus 321 DiarSLL~mIs~NIGqiA~L~A~~~--~--------ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGyl 390 (876)
T PLN02902 321 DISLSLLRMISYNIGQISYLNALRF--G--------LKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFL 390 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--C--------CCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchh
Confidence 9999999999999988755444433 3 789999999986 5666787776652 3444444 4457
Q ss_pred cHHHHHHHH
Q 009868 459 TALGAAFAA 467 (523)
Q Consensus 459 ~alGaA~lA 467 (523)
+|+||.+..
T Consensus 391 GAlGafl~~ 399 (876)
T PLN02902 391 GALGAFMSY 399 (876)
T ss_pred HHHHHHhcC
Confidence 889997643
No 84
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=94.56 E-value=0.093 Score=53.78 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC--CceeecCC
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG--SPVIRPAD 455 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg--~pv~~~~~ 455 (523)
.++.++|-.++.+...+-.+....+-. ++.|+++||.+.|+.+++.+.+-+. .||.+.+.
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~--------pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGK--------VDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 455677777777777666665433224 6899999999988877766666654 78888653
No 85
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.46 E-value=0.29 Score=45.37 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=44.5
Q ss_pred EEEEecCCCCceEEEEcC--CC--CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 9 IGAIDQGTTSTRFIIYDH--QA--RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~--~g--~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
++||||||+++|+++... +| ++++....|. .-=..| .-.|.+..-+++.++++++-++ .+...++ ..+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s--~gi~~G-~I~d~~~~~~~I~~ai~~ae~~---~~~~i~~--V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPS--RGIRKG-VIVDIEAAARAIREAVEEAERM---AGVKIDS--VYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecC--CCccCc-EEECHHHHHHHHHHHHHHHHHH---hCCcccE--EEE
Confidence 368999999999999863 45 4444443321 111234 4568888888888888777655 3444333 235
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
++++
T Consensus 73 ~i~g 76 (187)
T smart00842 73 GISG 76 (187)
T ss_pred EEcC
Confidence 5555
No 86
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.097 Score=56.52 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA 464 (523)
+++..-+++=+-.-+...+... .+.... +..|=++||.+|.|..-+++++.||++..+ ++..|+.|+|||
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~-~l~~ed--------i~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~A 376 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADA-KLKVED--------IHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAA 376 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh-cCcccc--------ceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHH
Confidence 4455556665555555544432 122223 778899999999999999999999999976 557889999999
Q ss_pred HHHHHhc
Q 009868 465 FAAGLAI 471 (523)
Q Consensus 465 ~lA~~~~ 471 (523)
+..|.-.
T Consensus 377 LqcAIlS 383 (727)
T KOG0103|consen 377 LQCAILS 383 (727)
T ss_pred HHHHhcC
Confidence 9988643
No 87
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=94.20 E-value=0.074 Score=59.52 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC---CceeecC----
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG---SPVIRPA---- 454 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg---~pv~~~~---- 454 (523)
..+++++.+++.+.++-.+...++.+.+..+ ++.|+++||.++|..+++.+.+.++ ..|..+.
T Consensus 628 g~~~~~IAa~fh~tla~~L~~~a~~~~~~~g----------~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~ 697 (711)
T TIGR00143 628 GEDRSKIAHIAHKFVASGLVEIATAIAVPFG----------IHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPP 697 (711)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCC
Confidence 3578899999999998888877777654333 6789999999999999999998875 6676543
Q ss_pred CCCccHHHHHHHHH
Q 009868 455 DIETTALGAAFAAG 468 (523)
Q Consensus 455 ~~e~~alGaA~lA~ 468 (523)
...+.++|.|++|+
T Consensus 698 nDgGislGQa~~a~ 711 (711)
T TIGR00143 698 GDGGISLGQAVAAA 711 (711)
T ss_pred CHHHHHHHHHHHhC
Confidence 34566788877663
No 88
>PRK09604 UGMP family protein; Validated
Probab=93.83 E-value=0.25 Score=50.41 Aligned_cols=81 Identities=26% Similarity=0.188 Sum_probs=61.7
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCC----C
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPAD----I 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~----~ 456 (523)
++.++.+++.+.++-.+.+.++...+..+ +++|.++||.+.|..+++.+.+.+ |.++.++.. .
T Consensus 226 ~~~~iA~s~q~~l~~~l~~~~~~~~~~~~----------~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D 295 (332)
T PRK09604 226 TKADIAASFQAAVVDVLVIKTKRALKQTG----------VKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTD 295 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcH
Confidence 47899999999998888888777655333 678999999999999999999998 788887553 3
Q ss_pred CccHHHHHHHHHHhcccc
Q 009868 457 ETTALGAAFAAGLAIGVF 474 (523)
Q Consensus 457 e~~alGaA~lA~~~~G~~ 474 (523)
.+.++|+|-+-..-.|..
T Consensus 296 ~gisIg~ag~~~~~~g~~ 313 (332)
T PRK09604 296 NAAMIAAAGYERLKAGEF 313 (332)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 455666665555555543
No 89
>PRK14878 UGMP family protein; Provisional
Probab=93.77 E-value=0.28 Score=49.76 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCCCcc
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADIETT 459 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~e~~ 459 (523)
.++.++.+++.+.++-.+-...+...+..+ +++|.++||.+.|..+++.+.+.+ |.+|.+++..-++
T Consensus 212 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~ 281 (323)
T PRK14878 212 ERLEDVCYSLRETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAG 281 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCc
Confidence 346899999999998888887777655433 678999999999999999999987 8888886643334
Q ss_pred HHHHHH
Q 009868 460 ALGAAF 465 (523)
Q Consensus 460 alGaA~ 465 (523)
--|+++
T Consensus 282 D~GimI 287 (323)
T PRK14878 282 DNGAMI 287 (323)
T ss_pred hHHHHH
Confidence 444433
No 90
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=93.72 E-value=0.33 Score=49.97 Aligned_cols=82 Identities=20% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC-ceeecC--CCCcc
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS-PVIRPA--DIETT 459 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~--~~e~~ 459 (523)
....|++.++..-+--.+...++.+.+.+|.+ +.|.++||.+-|-.+++.+++..+. .|.++. ..++.
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~---------~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ 203 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVLHLVRHLLERTGID---------NNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGL 203 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcch
Confidence 45677775555444444444555554445532 3499999999999999999999765 477755 46688
Q ss_pred HHHHHHHHHHhccc
Q 009868 460 ALGAAFAAGLAIGV 473 (523)
Q Consensus 460 alGaA~lA~~~~G~ 473 (523)
|+|||+.+....+.
T Consensus 204 aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 204 AIGAALYAWHELGG 217 (360)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999977654
No 91
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.44 E-value=0.17 Score=51.58 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=38.5
Q ss_pred cc-EEEEecCccccHHHHHHHHhhcCCceeec-CCCCccHHHHHHH
Q 009868 423 EF-LLRVDGGATVNNLLMQIQADLLGSPVIRP-ADIETTALGAAFA 466 (523)
Q Consensus 423 ~~-~i~~~GG~a~s~~~~qi~Advlg~pv~~~-~~~e~~alGaA~l 466 (523)
++ .|+++||+|+-+.+.+.+++.++.||.+. ++.++.++||+..
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 55 59999999999999999999999999986 4566788899886
No 92
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=93.17 E-value=0.59 Score=46.08 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
+..++++|||||+++|+++.+.+++++.....+-.. -..|. -.|.+...+.+.+.++.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~--vr~G~-i~di~~a~~~i~~~~~~ 79 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADV--VRDGI-VVDFIGAVTIVRRLKAT 79 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccc--cCCCE-EeeHHHHHHHHHHHHHH
Confidence 356899999999999999998887766554443321 13454 55655555544444433
No 93
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=93.06 E-value=0.13 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEecCCCCceEEEEcCCCCEEEE
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
|.+|||+|++|++++|.+|+++..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 469999999999999998776644
No 94
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=92.99 E-value=0.23 Score=50.84 Aligned_cols=62 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhh-ccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDA-VEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA 454 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~-g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~ 454 (523)
..+.++..++-++-+++..++-..... +.+ +++|+++||+++.+-+.+.+++.||.||++.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~--------i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGES--------IERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------CCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 467888999999999999999765432 445 99999999999999999999999999999865
No 95
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.77 E-value=0.42 Score=47.10 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHH-----HhhcCCceeecC-CCCcc
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQ-----ADLLGSPVIRPA-DIETT 459 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~-----Advlg~pv~~~~-~~e~~ 459 (523)
....+.++++.+..+...+..+.+..+.. -..|++.||.++|+.+.+-+ ..+...|+.++. ....+
T Consensus 192 d~~a~~Il~~a~~~la~~i~~~~~~~~~~--------~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 263 (271)
T PF01869_consen 192 DEVARDILAEAADELAELIKAVLKRLGPE--------KEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDP 263 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCTCC--------CCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccH
Confidence 33455666777777766666554433322 22399999999997776655 444455666654 45578
Q ss_pred HHHHHHHH
Q 009868 460 ALGAAFAA 467 (523)
Q Consensus 460 alGaA~lA 467 (523)
++|||++|
T Consensus 264 a~GAallA 271 (271)
T PF01869_consen 264 AYGAALLA 271 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999987
No 96
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.29 Score=49.62 Aligned_cols=51 Identities=29% Similarity=0.295 Sum_probs=44.4
Q ss_pred ccEEEEecCccccHHHHHHHHhhc-CC-ceeecCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLL-GS-PVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advl-g~-pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
+++|+++||.+|-|-..|++-|.| |+ |-.-....|+.|.|||..|++-.|.
T Consensus 363 ideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 363 IDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred CceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 899999999999999999999999 44 4444567899999999999988775
No 97
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.57 E-value=0.79 Score=47.47 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=29.7
Q ss_pred ccE-EEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 423 EFL-LRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 423 ~~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
+.+ |+++||+|+.+.+.+++.+.|+.||.+..+
T Consensus 314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred CCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 555 999999999999999999999999988653
No 98
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.72 Score=45.03 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=52.4
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+.++.||+=|.|+.|.+++|++++++.+++.....+. ..+.+..-+.+.+.++++..+ .+++++.-+.++|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHW------LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccc------cCCchHHHHHHHHHHHHHHhh---cCCCccCccceee
Confidence 4689999999999999999999999988766544322 223456777888888888776 5665443245555
Q ss_pred Ec
Q 009868 86 LT 87 (523)
Q Consensus 86 is 87 (523)
++
T Consensus 73 L~ 74 (336)
T KOG1794|consen 73 LG 74 (336)
T ss_pred ee
Confidence 43
No 99
>PTZ00288 glucokinase 1; Provisional
Probab=91.93 E-value=0.99 Score=47.16 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=37.9
Q ss_pred CceEEEEecCCCCceEEEEcC---CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 6 EVFIGAIDQGTTSTRFIIYDH---QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~---~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
-.|++++|||+|++|.++++. ++..+...++.+++ .-+|..+..+.+.+.+.++.+.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ 84 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV-------TKTDIRELLEFFDEVLQKLKKN 84 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc-------ccccHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999986 22233333343331 1246777777777777776654
No 100
>PF13941 MutL: MutL protein
Probab=91.73 E-value=0.61 Score=49.24 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=40.3
Q ss_pred EEEEecCCCCceEEEEc---CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYD---HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d---~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
+|.+|+|+|.+|+.+|| .+.+++++++.++. ++ ++++...+.++++++.++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT--------v~--~~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT--------VE--PGDVTIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC--------cC--cccHHHHHHHHHHHHHHh
Confidence 57799999999999999 47889998888876 22 245677777787777766
No 101
>PRK13331 pantothenate kinase; Reviewed
Probab=91.27 E-value=0.69 Score=44.97 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCc-------eeecC
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSP-------VIRPA 454 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~p-------v~~~~ 454 (523)
..|...|-..++-|.+..+..+++.+++..+ + -+|+++||.+ +++++.+..+ ..+
T Consensus 173 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~-~---------~~vi~TGG~a------~~l~~~~~~~~~~~~~~~~~-- 234 (251)
T PRK13331 173 TNTQEAIQSGVIYTILAGLRDFIEDWLSLFP-D---------GKIVLTGGDG------ELLHNYLQDLDPELAQRLRV-- 234 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------CEEEEECCCH------HHHHHHhhccccccccccEE--
Confidence 4688889999999999999999998887554 4 3699999965 3444444442 333
Q ss_pred CCCccHHHHHHHH
Q 009868 455 DIETTALGAAFAA 467 (523)
Q Consensus 455 ~~e~~alGaA~lA 467 (523)
.++-...|-.+++
T Consensus 235 ~~~LvL~GL~~i~ 247 (251)
T PRK13331 235 DPNLIFWGIAAIR 247 (251)
T ss_pred CcchHHHHHHHHH
Confidence 3556677776654
No 102
>PTZ00297 pantothenate kinase; Provisional
Probab=91.14 E-value=7.4 Score=47.43 Aligned_cols=74 Identities=18% Similarity=0.095 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHHHHHHHHhhc------CCceeecC-
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNLLMQIQADLL------GSPVIRPA- 454 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~qi~Advl------g~pv~~~~- 454 (523)
.+++|++|+++--|.+++-++--...+. .. +++|+.+|+. ..++..++.++..+ ++.-..++
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~--~~--------~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~h 1431 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRV--QG--------VPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEH 1431 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecC
Confidence 3589999999999999998875444332 23 7899999995 46899999999887 44455555
Q ss_pred CCCccHHHHHHH
Q 009868 455 DIETTALGAAFA 466 (523)
Q Consensus 455 ~~e~~alGaA~l 466 (523)
..-.+|+||++.
T Consensus 1432 egy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1432 DGYLGALGCATL 1443 (1452)
T ss_pred ccccHHhhhhhc
Confidence 445889999884
No 103
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.07 E-value=0.43 Score=48.88 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhc-cccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAV-EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g-~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
.+.++..++-++-+++..++......+ .+ +++|+++||+++-+-+...++..||.||++.+.
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~--------i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNS--------LDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcc--------cceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 457889999999888888877654332 33 899999999999999999999999999998653
No 104
>PLN02914 hexokinase
Probab=91.00 E-value=0.83 Score=48.77 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=56.4
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhC-CCCcccCceE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATAD-GHNVDSGLKA 83 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~I~a 83 (523)
.+++||+|+||.|+++++..|+ ++...+..++ .|.. ...-..+++++-+.++|.+.+++-... .....+ ..-
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--ip~~-l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~-~l~ 171 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVS--IPQE-LMFGTSEELFDFIASGLANFVAKEGGKFHLPEGR-KRE 171 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEec--CChh-hccCCHHHHHHHHHHHHHHHHHhccccccCCccc-ccc
Confidence 5788999999999999997652 4444343333 1221 123457899999999999999761100 011112 334
Q ss_pred EEEccccceeEEeeCCCCcccccccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+|++- -.+++. .+.--.-.+.|.
T Consensus 172 LGfTF----SFP~~Q-~si~~g~Li~WT 194 (490)
T PLN02914 172 IGFTF----SFPVKQ-TSIDSGILMKWT 194 (490)
T ss_pred ceeeE----eeeeec-CCCCceEEEEec
Confidence 66665 457764 332223345674
No 105
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=90.96 E-value=1.1 Score=45.31 Aligned_cols=62 Identities=24% Similarity=0.201 Sum_probs=51.6
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPAD 455 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~ 455 (523)
++.++.+++.+.++-.+.+.++...+.++ +++|.++||.+.|..+++.+.+.+ +.++.++..
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~----------~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTG----------LKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 36899999999999988888777655333 678999999999999999999998 888887553
No 106
>PRK13324 pantothenate kinase; Reviewed
Probab=90.71 E-value=0.89 Score=44.47 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|...++-|.+..+...++.+++..+.+ -+++++||.++ .+.+ ...+..+ .++-...
T Consensus 183 ~nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~---------~~vi~TGG~a~--~~~~-----~~~~~~~--~~~LvL~ 244 (258)
T PRK13324 183 YDTKTNIRSGLYYGHLGALKELKRRSVEEFGSP---------VYTIATGGFAG--LFKE-----EDIFNEI--SPDLILR 244 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCChH--Hhcc-----cCCcceE--CcChHHH
Confidence 356777777788888888888888877655433 36899999863 2311 2333333 3556777
Q ss_pred HHHHHHHH
Q 009868 462 GAAFAAGL 469 (523)
Q Consensus 462 GaA~lA~~ 469 (523)
|-.+++..
T Consensus 245 GL~~i~~~ 252 (258)
T PRK13324 245 GIRIAFLE 252 (258)
T ss_pred HHHHHHHH
Confidence 87776553
No 107
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=90.66 E-value=0.28 Score=49.62 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=34.5
Q ss_pred cEEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHH
Q 009868 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 424 ~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~l 466 (523)
+-|+++||+|+-+-+-+.+++-++.||.+.+.++ +.+.|+..+
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence 3499999999999999999999999999988554 667788653
No 108
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=90.60 E-value=1.4 Score=44.91 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCCCccHH
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADIETTAL 461 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~e~~al 461 (523)
+.++.+++.|.++-.+...++...+.. . +++|+++||.+.|..+++.+.+.+ +.+++.++.. -+.=
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~--~--------~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~-~ctD 304 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHC--G--------SNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDER-YCID 304 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--C--------CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChH-hhhh
Confidence 679999999998888766665543322 3 678999999999999999999886 7788876532 2222
Q ss_pred HHHHHHHHh
Q 009868 462 GAAFAAGLA 470 (523)
Q Consensus 462 GaA~lA~~~ 470 (523)
=|||+|..|
T Consensus 305 NaaMIa~~g 313 (345)
T PTZ00340 305 NGAMIAYAG 313 (345)
T ss_pred hHHHHHHHH
Confidence 344555444
No 109
>PRK13317 pantothenate kinase; Provisional
Probab=90.58 E-value=0.28 Score=48.52 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.3
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
.+.+|||+|+|.+|++++|++++++..
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEE
Confidence 478999999999999999998877643
No 110
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=90.35 E-value=1.1 Score=45.36 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhh---cCCceeecCC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADL---LGSPVIRPAD 455 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Adv---lg~pv~~~~~ 455 (523)
++.++.+++.+.++-.+.+..+...+..| +++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 214 ~~~diAasfq~~l~~~l~~~a~~~~~~~g----------~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 214 RLEDVCYSLQETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 46899999999998888888777765443 57899999999999999999995 4677876543
No 111
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=89.95 E-value=1.2 Score=48.46 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC----CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA----DI 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~----~~ 456 (523)
+..++.+++.+.++-.+...+....+..| +++|.++||.+.|..+++.+.+.+ +.+|.+++ ..
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g----------~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D 286 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTG----------KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGD 286 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccc
Confidence 34789999999998888887777655444 578999999999999999999776 77888764 34
Q ss_pred CccHHHHHHHHHH
Q 009868 457 ETTALGAAFAAGL 469 (523)
Q Consensus 457 e~~alGaA~lA~~ 469 (523)
.+.++|+|.....
T Consensus 287 ~g~~ia~a~~~~~ 299 (535)
T PRK09605 287 NGAMIAWLGLLMY 299 (535)
T ss_pred hHHHHHHHHHHHH
Confidence 5667777765443
No 112
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=1.4 Score=44.58 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-CCcee
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-GSPVI 451 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-g~pv~ 451 (523)
-+++|..+.+.|-.+-.+-..+..+ ... .++++++|||.+|+++|+.+|..+ |.+|.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~~~----~~~--------p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVATL----QGD--------PRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhc----cCC--------CceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 4788999998886666554444322 223 689999999999999999999999 54554
No 113
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=0.88 Score=48.38 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=59.8
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHH-HHHHhhcCCceeecC--CCCccH
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLM-QIQADLLGSPVIRPA--DIETTA 460 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~-qi~Advlg~pv~~~~--~~e~~a 460 (523)
+-+.-+++.+|.+...+...+. +..| ..+|.++||.+.|-.|+ +++...+...|.+.+ .....|
T Consensus 260 diAasaQ~~lE~l~l~~~~~~~---~~~g----------~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~A 326 (555)
T COG2192 260 DIAASAQAYLEELVLEMLRYLR---EETG----------EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLA 326 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhC----------ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchH
Confidence 3455566888888887655543 3233 46899999999999999 999999999999865 456789
Q ss_pred HHHHHHHHHhccc
Q 009868 461 LGAAFAAGLAIGV 473 (523)
Q Consensus 461 lGaA~lA~~~~G~ 473 (523)
+|||+.+..-.+.
T Consensus 327 vGAAl~~~~~~~~ 339 (555)
T COG2192 327 VGAALAVKRELGG 339 (555)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999877654
No 114
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=89.19 E-value=2.7 Score=43.94 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
.++++|=+|-+..-++.-++.. |.+... ...|+++||+++-+-...+-..+|++||.+..+
T Consensus 293 s~II~aR~~Ei~~lV~~~l~~~----g~~~~~-----~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 293 SEIIEARVEEILELVKAELRKS----GLPNHL-----PGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHc----CccccC-----CCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 5566666666655555444433 332111 688999999999999999999999999998554
No 115
>PLN02405 hexokinase
Probab=89.09 E-value=1.4 Score=47.13 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=42.3
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|++++...|+ ++...+..++ .|.. ...-..+++++-+.++|.+.+++
T Consensus 96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--ip~~-~~~gt~~~LFdfIA~~i~~fl~~ 157 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVS--IPPH-LMTGSSDALFDFIAAALAKFVAT 157 (497)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEee--cChh-hccCCHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999997652 4444444433 2221 12346788999999999999876
No 116
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=88.83 E-value=1.7 Score=42.00 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=32.8
Q ss_pred EEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
||||||+++|+++.+.+++.++....+-. --.+| .-.|.+.....+....+.
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~--~~~~g-~I~d~~~~~~~l~~l~~~ 52 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFAD--VVRDG-IVVDFLGAVEIVRRLKDT 52 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEecccc--cccCC-eEEEhHHHHHHHHHHHHH
Confidence 69999999999999987765544333221 11233 556877766555554433
No 117
>PLN02666 5-oxoprolinase
Probab=88.71 E-value=0.75 Score=54.71 Aligned_cols=76 Identities=17% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCc-eeecC-CCCccH
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSP-VIRPA-DIETTA 460 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~p-v~~~~-~~e~~a 460 (523)
.+.++...++++-..-.+...+..+....|.+|. ...++..||+. ++..-.+|+.||+| |.++. ..-.+|
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr------~~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA 525 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETA------NHALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSA 525 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------CceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHH
Confidence 3567777777777666666666666544577621 24456666654 78889999999999 87775 445678
Q ss_pred HHHHHH
Q 009868 461 LGAAFA 466 (523)
Q Consensus 461 lGaA~l 466 (523)
+|+++.
T Consensus 526 ~G~~~a 531 (1275)
T PLN02666 526 YGMGLA 531 (1275)
T ss_pred HHHHhh
Confidence 898764
No 118
>PLN02362 hexokinase
Probab=88.13 E-value=1.7 Score=46.78 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=40.3
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|+++++..|+ .+...+..++ .|.. -..-..+++++-+.++|.+.+++
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--Ip~~-l~~~~~~eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHP--IPQH-LMNSTSEVLFDFIASSLKQFVEK 157 (509)
T ss_pred eEEEEecCCceEEEEEEEecCCCcceeeceeEEEe--cChh-hccCCHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999997663 2222112222 1221 11235789999999999999876
No 119
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=87.97 E-value=1.3 Score=44.68 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA 454 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~ 454 (523)
++.++.+++.+.++-.+-+.++...+..+ +++|.++||.+.|..+++.+.+.+ +.++.+++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTG----------PKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46899999999999888887777655333 678999999999999999999987 66777754
No 120
>PLN02596 hexokinase-like
Probab=87.82 E-value=1.8 Score=46.34 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=40.8
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|+++++..|+ +....+..++ .|.. ...-..+++++-+.++|.+.+++
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--Ip~~-l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEIS--IPSN-VLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEec--CChH-hhcCCHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999998764 2333333332 1211 12235788999999999999876
No 121
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=87.67 E-value=1.9 Score=42.07 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC--CceeecC-CCC
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG--SPVIRPA-DIE 457 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg--~pv~~~~-~~e 457 (523)
.-++-++++++|++..-+-.+.....-+ ++-|+++||.+++..++..+.+-+. .||.+.. ..|
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~--------vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~E 334 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGK--------VDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDE 334 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCC--------CCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchH
Confidence 4555677888898877776665433334 8999999999999999999999876 6777744 444
No 122
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=1.1 Score=48.66 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=44.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCc-eee-cCCCCccHHHHHHHHHHhccccC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSP-VIR-PADIETTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~p-v~~-~~~~e~~alGaA~lA~~~~G~~~ 475 (523)
+..|+++||.++-|.+.+++.|.|+-. +.. ....|+.|+|||+.|+.-.|...
T Consensus 335 i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~ 389 (620)
T KOG0101|consen 335 IDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKS 389 (620)
T ss_pred CceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcc
Confidence 899999999999999999999999853 222 34678999999999998877543
No 123
>PRK13326 pantothenate kinase; Reviewed
Probab=87.39 E-value=2 Score=42.18 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|-..++-|.+..+..+++.+++..+.+ -.|+++||.+ ++++..+..+..+ .++-+..
T Consensus 185 ~nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~---------~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~ 247 (262)
T PRK13326 185 LSTSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE---------FNLIITGGNS------NLILPLISVDFIF--NLYLTLE 247 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCH------HHHHhhCCCCcEE--CcccHHH
Confidence 468888999999999999999999998765533 3699999965 4566667777665 3556777
Q ss_pred HHHHHH
Q 009868 462 GAAFAA 467 (523)
Q Consensus 462 GaA~lA 467 (523)
|-+++.
T Consensus 248 GL~~i~ 253 (262)
T PRK13326 248 GIRILG 253 (262)
T ss_pred HHHHHH
Confidence 776654
No 124
>PTZ00107 hexokinase; Provisional
Probab=87.29 E-value=2.6 Score=44.91 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=40.6
Q ss_pred eEEEEecCCCCceEEEEcCCCC-EEEEEEeeeee--cc---CCCCe-EEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR-PIGSHQVEFTQ--FY---PEAGW-VEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~-i~~~~~~~~~~--~~---~~~g~-~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|+++++..|. .....+..+.. .. +.+.. .+...+++++.+.++|.+.+++
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999998664 22222222221 11 11111 1125789999999999999876
No 125
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=87.18 E-value=0.74 Score=46.32 Aligned_cols=31 Identities=26% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeee
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQ 40 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~ 40 (523)
+|+|||+-|+|++++|.+|++....+.+.|+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc
Confidence 5899999999999999999888777666664
No 126
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=86.08 E-value=2.5 Score=41.75 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.2
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
.+|||+|+|-+|.+.+|++++++..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEE
Confidence 5899999999999999999988743
No 127
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=85.79 E-value=1.2 Score=46.17 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred EEEEecCCCCceEEEEcC--CC--CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 9 IGAIDQGTTSTRFIIYDH--QA--RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~--~g--~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
++||||||+++|+++... ++ ++++....|.. --..| .-.|++.+-+++.++++++-++ .+...++ ..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G-~I~d~~~~~~~i~~al~~~e~~---~~~~i~~--v~~ 73 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKG-VINDIEAAVGSIQRAIEAAELM---AGCEIRS--VIV 73 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEEcHHHHHHHHHHHHHHHHHH---hCCcccE--EEE
Confidence 679999999999999763 34 34444444322 11234 4568888888888887777555 3444333 235
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
++++
T Consensus 74 ~v~g 77 (371)
T TIGR01174 74 SISG 77 (371)
T ss_pred EEcc
Confidence 5555
No 128
>PRK13320 pantothenate kinase; Reviewed
Probab=85.62 E-value=2.9 Score=40.62 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
.+|...+...++-|.+..+...++.+++..+ + -.|+++||.+ +++++.+..++.+ .++-...
T Consensus 173 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~-~---------~~vi~TGG~a------~~l~~~l~~~~~~--~p~Lvl~ 234 (244)
T PRK13320 173 RSTEECIRSGVVWGCVAEIEGLIEAYKSKLP-E---------LLVILTGGDA------PFLASRLKNTIFA--DEHAVLK 234 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------CEEEEECCCH------HHHHHhcCCccEE--CcchHHH
Confidence 4688888888888888888888888876544 3 3699999976 4466666777665 3455666
Q ss_pred HHHHHH
Q 009868 462 GAAFAA 467 (523)
Q Consensus 462 GaA~lA 467 (523)
|-..+.
T Consensus 235 GL~~~~ 240 (244)
T PRK13320 235 GLNRIL 240 (244)
T ss_pred HHHHHH
Confidence 665543
No 129
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=85.13 E-value=4.2 Score=41.46 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=52.5
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCC-CeEE-eCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEA-GWVE-HEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~-g~~e-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
.+||||-.+..+-++|+|.+|+++........ .+.. |-+. .....-.+.+...+++++++ +++.+++ |.+|+
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~d-id~Ia 75 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEE---AKITPSD-ISLIC 75 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEE
Confidence 58999999999999999987888876544332 2222 3222 22333456677777777776 6788889 99999
Q ss_pred Ecc
Q 009868 86 LTN 88 (523)
Q Consensus 86 is~ 88 (523)
++.
T Consensus 76 vt~ 78 (345)
T PTZ00340 76 YTK 78 (345)
T ss_pred Eec
Confidence 876
No 130
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.74 E-value=1.6 Score=48.55 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=48.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
++.+|||+|+|.+-++++|.++.++...+..+. |+.....+...++.+.... ...+ |..|.+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt------------P~~~~~~~~~~~~~~~~~~-----~~~~-i~~v~~ 63 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT------------PDLPSGIVNAGIRLALELL-----EGSE-VDLVVH 63 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC------------CCchhhHHHHHHHHHhhcc-----cccc-ccEEEE
Confidence 578999999999999999997766666655543 2333333444444443321 0135 777888
Q ss_pred ccccceeEEeeCCCCc
Q 009868 87 TNQRETTVLWSKSTGC 102 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~ 102 (523)
+++-.+--++-+ +|.
T Consensus 64 gTT~aTNaller-kG~ 78 (674)
T COG0145 64 GTTLATNALLER-KGL 78 (674)
T ss_pred eccHHHHHHHhc-cCc
Confidence 777666555555 454
No 131
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=84.41 E-value=3.2 Score=40.27 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN 435 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s 435 (523)
..|..-|...++.|.+..+..+++.+++..+.+ -+|+++||-++.
T Consensus 175 ~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~---------~~vi~TGG~a~~ 219 (243)
T TIGR00671 175 KSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRK---------FAVVITGGDGKY 219 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCchHh
Confidence 468899999999999999999999887755433 469999997753
No 132
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=84.28 E-value=11 Score=37.22 Aligned_cols=80 Identities=26% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcCC-----ceeecCCCCcc
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLGS-----PVIRPADIETT 459 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg~-----pv~~~~~~e~~ 459 (523)
+.++|=.=|-++-.++.++..+-.. .++ +..=.|+.+||..+ ++.|++=+-+-+-. .++....++.+
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~-~k~------g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ss 306 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPT-LKK------GKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESS 306 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hcc------cCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccc
Confidence 4455555555666666655554321 111 01345889999986 55665543333222 25556678899
Q ss_pred HHHHHHHHHHhcc
Q 009868 460 ALGAAFAAGLAIG 472 (523)
Q Consensus 460 alGaA~lA~~~~G 472 (523)
|+|||++|+.-.+
T Consensus 307 AvgAA~laa~~~~ 319 (336)
T KOG1794|consen 307 AVGAAILAASLDN 319 (336)
T ss_pred hHHHHHHhhhhcc
Confidence 9999999997655
No 133
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=83.96 E-value=9.4 Score=38.14 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcC
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLG 447 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg 447 (523)
...++|++||++--|.+++-++...... ... +++|+..|-..| ++.-|..+|=.++
T Consensus 274 ~~s~eDia~SlL~mIsnNIGqiAyl~A~--~~n--------i~rV~FgG~fiR~~~itM~tLsyAi~ 330 (371)
T KOG2201|consen 274 SVSKEDIARSLLRMISNNIGQIAYLCAL--NEN--------IKRVYFGGFFIRGHPITMKTLSYAIN 330 (371)
T ss_pred ccChHHHHHHHHHHHHhhHHHHHHHHHH--HhC--------ccEEEEeeeEEecCceehHHHHHHHH
Confidence 4789999999999999999887654432 334 899999998887 5666888776653
No 134
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.77 E-value=2.8 Score=41.82 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
..+.++-+++.+.-++++.++-+-..++.. +++.|+++||+++-.-+-+.+.+.++.|+++.++
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~-------~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMV-------DIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccc-------eeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 356788889999999999998776544432 2899999999999999999999999999999654
No 135
>PRK00976 hypothetical protein; Provisional
Probab=83.62 E-value=5.4 Score=40.19 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccH--HHHHHHHhhcCCceeecCCCCccHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNN--LLMQIQADLLGSPVIRPADIETTALGA 463 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~--~~~qi~Advlg~pv~~~~~~e~~alGa 463 (523)
...++...+.++..+..++-. .+ ++.|++.||.++.+ .+.+.+.+.+..++... ..+++++||
T Consensus 241 ~~aid~~~~~LA~~IAnLi~l------lD--------Pe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGA 305 (326)
T PRK00976 241 KLAIDTLALFVAMEIASLLLL------NP--------EDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGL 305 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cC--------CCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHH
Confidence 344555555555554444322 24 68899999999876 45666666665443322 468899999
Q ss_pred HHHHHHhc
Q 009868 464 AFAAGLAI 471 (523)
Q Consensus 464 A~lA~~~~ 471 (523)
|++|..-.
T Consensus 306 A~iA~~i~ 313 (326)
T PRK00976 306 ALIARDIF 313 (326)
T ss_pred HHHHHHHh
Confidence 99987643
No 136
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=83.56 E-value=2.1 Score=43.19 Aligned_cols=80 Identities=24% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc----CCceeecCC----CCcc
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL----GSPVIRPAD----IETT 459 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl----g~pv~~~~~----~e~~ 459 (523)
-+.|.+|+++-.+...+- .. .+ ++.|+++|-.++++.+..-+.+.| +.++..... ...+
T Consensus 239 a~ea~~E~i~k~V~~l~~----~~-~~--------~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKea 305 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLA----SV-PD--------PDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEA 305 (343)
T ss_pred HHHHHHHHHHHHHHHHhc----cc-CC--------CCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhh
Confidence 566777877766553321 11 13 688999999999988776665555 445654433 2348
Q ss_pred HHHHHHHHH-HhccccCChhHH
Q 009868 460 ALGAAFAAG-LAIGVFKEEEIF 480 (523)
Q Consensus 460 alGaA~lA~-~~~G~~~~~~~a 480 (523)
|.|+|++|- .+-|.|+.+-+.
T Consensus 306 A~GaAiIA~glaGG~~~~lv~~ 327 (343)
T PF07318_consen 306 AQGAAIIANGLAGGRYKELVDH 327 (343)
T ss_pred hhhHHHHhhhhhcccHHHHHHH
Confidence 999999984 555677665443
No 137
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=83.53 E-value=3.4 Score=42.17 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=30.5
Q ss_pred EEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 11 AIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
|||||+.++|++-++..++ +......++|...-.+| ...|++.+-+++.+++++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~~ 57 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLKE 57 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHHH
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHHH
Confidence 8999999999999997543 33445666653222233 335777655555444433
No 138
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.30 E-value=4.5 Score=44.47 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC---cee----ecC
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS---PVI----RPA 454 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~---pv~----~~~ 454 (523)
..+++.++.+...+++-.+.+++..+.+..| +++|.++||..+|+.+++-+++.+.. .+. ++.
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~g----------i~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~ 732 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYG----------INKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPA 732 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCC
Confidence 4678888888888888888888777766444 67999999999999999999999974 333 334
Q ss_pred CCCccHHHHHHHHH
Q 009868 455 DIETTALGAAFAAG 468 (523)
Q Consensus 455 ~~e~~alGaA~lA~ 468 (523)
..-+-++|=|+.|+
T Consensus 733 ~DggIslGQ~v~~~ 746 (750)
T COG0068 733 GDGGISLGQAVAAA 746 (750)
T ss_pred CCCceeHHHHHHHH
Confidence 44556889888773
No 139
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=1.2 Score=47.25 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=47.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC-ceeecCCCCccHHHHHHHHHHhccccCC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS-PVIRPADIETTALGAAFAAGLAIGVFKE 476 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~~e~~alGaA~lA~~~~G~~~~ 476 (523)
+++|.+.||++|-|-..+.+.++||+ |-.-+.+.|+.|+|||+.+++-.|..++
T Consensus 354 i~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 354 INEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKD 408 (640)
T ss_pred hhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccc
Confidence 89999999999999999999999985 4455678899999999999887776654
No 140
>PRK09604 UGMP family protein; Validated
Probab=83.18 E-value=5.8 Score=40.42 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=50.1
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeee-eccCCCCeE-EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT-QFYPEAGWV-EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~-~~~~~~g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++||||-.+-.+-++|+|.+++++........ ...+..|.. +.....--+.+...+++++++ .++++.+ |.+|+
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~d-id~ia 77 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLED-IDAIA 77 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEE
Confidence 58999997778889999877688876543221 111122321 222233455666677777776 6788889 99998
Q ss_pred Ecc
Q 009868 86 LTN 88 (523)
Q Consensus 86 is~ 88 (523)
++.
T Consensus 78 vt~ 80 (332)
T PRK09604 78 VTA 80 (332)
T ss_pred Eec
Confidence 876
No 141
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=83.09 E-value=3.4 Score=38.26 Aligned_cols=63 Identities=24% Similarity=0.182 Sum_probs=48.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCC-CccHHHHHHH
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADI-ETTALGAAFA 466 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~-e~~alGaA~l 466 (523)
+-|+|-+|-..+..++ +.. ++.+++.||.+.-+-.-.++-.-|+++|+.+..+ --+.||-|+-
T Consensus 208 ~PV~eKMAeIv~~hie------~~~--------i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 208 KPVYEKMAEIVARHIE------GQG--------ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred hHHHHHHHHHHHHHhc------cCC--------CcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhc
Confidence 3477777766666543 334 7889999999988888889999999999998854 4678887763
No 142
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=82.74 E-value=1.8 Score=42.24 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEe
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQV 36 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~ 36 (523)
...+++.||=||||.|+-|++.+|+++.+.+-
T Consensus 3 ~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~ 34 (306)
T COG3734 3 SEPAYIAIDWGTTNLRAWLVRGDGAVLAERRS 34 (306)
T ss_pred CCceEEEEecCCccEEEEEEcCCcceeeeecc
Confidence 34678999999999999999999998876543
No 143
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=82.52 E-value=2 Score=44.44 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=40.6
Q ss_pred ceEEEEecCCCCceEEEEcCC--CCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ--ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~--g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.-+|+||+|+||.|++++... |+..-+.+. +. .|..=...+.++++|.-+++.++..+++
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sk-s~--lp~e~~~~~~~~~l~~~iadrl~~fi~~ 136 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSK-SF--LPVECRDSESRDELFGFIADRLAAFIKE 136 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCcccccCc-cc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence 457899999999999999864 544322211 11 2222122337899999999999988776
No 144
>PRK10854 exopolyphosphatase; Provisional
Probab=82.01 E-value=6.1 Score=42.87 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCceEEEEecCCCCceEEEEcCC-C--CEEEEEEeeeeecc--CCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQ-A--RPIGSHQVEFTQFY--PEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS 79 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~-g--~i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (523)
....+.+|||||.|+|..+++.+ | +++...+..+..-. ...| .-++ +-.+..++++++..+.++..+ .++
T Consensus 9 ~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~-e~~~r~~~~L~~F~~~~~~~~--v~~ 83 (513)
T PRK10854 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSE-EAMERGLNCLSLFAERLQGFS--PAN 83 (513)
T ss_pred CCCEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCH-HHHHHHHHHHHHHHHHHHhCC--CCe
Confidence 35578899999999999999853 4 33433433333211 1122 2233 345556677777666554333 346
Q ss_pred CceEEEEcccc
Q 009868 80 GLKAIGLTNQR 90 (523)
Q Consensus 80 ~I~aIgis~~~ 90 (523)
+.+++.++.+
T Consensus 84 -v~~vATsAlR 93 (513)
T PRK10854 84 -VCIVGTHTLR 93 (513)
T ss_pred -EEEEehHHHH
Confidence 7888777743
No 145
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=81.58 E-value=6.6 Score=42.39 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=49.0
Q ss_pred CcccCCceEEEEecCCCCceEEEEcC-CCCE--EEEEEeeeeec--cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCC
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDH-QARP--IGSHQVEFTQF--YPEAGWVEHEPMEILESVRVCMAKALDKATADGH 75 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~-~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~ 75 (523)
|.+. ..++.+|||||.|+|..+++. +|.+ +...+..+..- ....| .-+++ -.+..++++++..+.++..+
T Consensus 1 ~~~~-~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~~~~- 75 (496)
T PRK11031 1 MLSS-SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQDIP- 75 (496)
T ss_pred CCCC-CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHHhCC-
Confidence 4444 557888999999999999995 3533 33333333321 11223 22333 34556677777666554333
Q ss_pred CcccCceEEEEcccc
Q 009868 76 NVDSGLKAIGLTNQR 90 (523)
Q Consensus 76 ~~~~~I~aIgis~~~ 90 (523)
..+ |.+++.++.+
T Consensus 76 -v~~-i~~vATsAvR 88 (496)
T PRK11031 76 -PSQ-IRVVATATLR 88 (496)
T ss_pred -CCe-EEEEEeHHHH
Confidence 346 8888877744
No 146
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=81.52 E-value=4.8 Score=40.34 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=43.6
Q ss_pred EEEEecCCCCceEEEEcCC-C--CEEEEEEeeeeeccC--CCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 9 IGAIDQGTTSTRFIIYDHQ-A--RPIGSHQVEFTQFYP--EAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~-g--~i~~~~~~~~~~~~~--~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
+.+||+||.++|..+++.+ + +++...+.++..-.. ..| ..+++ -.+.+++++++..+.+++.++ ++ |.+
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~~f~~~~~~~~v--~~-i~~ 75 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALKRFAELLRGFPV--DE-VRA 75 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCCC--Ce-EEE
Confidence 4679999999999999963 3 333334333332111 122 22333 344556777777665543333 46 777
Q ss_pred EEEcccc
Q 009868 84 IGLTNQR 90 (523)
Q Consensus 84 Igis~~~ 90 (523)
++-++.+
T Consensus 76 vaTsa~R 82 (300)
T TIGR03706 76 VATAALR 82 (300)
T ss_pred EEcHHHH
Confidence 7766644
No 147
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=80.39 E-value=4.3 Score=40.17 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecC--ccccH-HHHHHHHhhcCCceeecCCCCccHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGG--ATVNN-LLMQIQADLLGSPVIRPADIETTALGA 463 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG--~a~s~-~~~qi~Advlg~pv~~~~~~e~~alGa 463 (523)
.-++++.|+++.++...+-. ..+ ...|+++|- .++.+ .+...+.+.|+.+|.+... +.+|.|+
T Consensus 240 lA~dal~~~vameIasLl~l-----~~~--------~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~ 305 (326)
T TIGR03281 240 LALDSLAMSVAMEIASLGLL-----DCK--------EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGL 305 (326)
T ss_pred HHHHHHHHHHHHHHHhheec-----cCC--------CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhH
Confidence 34577888877776654321 123 458999987 67888 9999999999999999876 6799999
Q ss_pred HHHHHH
Q 009868 464 AFAAGL 469 (523)
Q Consensus 464 A~lA~~ 469 (523)
|++|--
T Consensus 306 AiIA~d 311 (326)
T TIGR03281 306 ALIAED 311 (326)
T ss_pred HHHHHH
Confidence 999864
No 148
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=80.26 E-value=4.9 Score=41.05 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=41.2
Q ss_pred ceEEEEecCCCCceEEEEcCCC---CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA---RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
..++|||||++++|++.+...+ ++......+.|...-.+|. -.|++.+ .+++++++++ .+....+ ..
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~----~~~l~~~~~~---~~~~~k~--v~ 72 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAV----AEALKELLSE---LGINTKK--AA 72 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHH----HHHHHHHHHH---cCCCcce--EE
Confidence 3689999999999999998533 3334444454422222332 3466554 4555555555 3433223 34
Q ss_pred EEEccc
Q 009868 84 IGLTNQ 89 (523)
Q Consensus 84 Igis~~ 89 (523)
+++.+.
T Consensus 73 ~alp~~ 78 (348)
T TIGR01175 73 TAVPGS 78 (348)
T ss_pred EEecCC
Confidence 666553
No 149
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=79.86 E-value=67 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=27.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcC---------CceeecC-CCCccHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLG---------SPVIRPA-DIETTALGAAFAAG 468 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg---------~pv~~~~-~~e~~alGaA~lA~ 468 (523)
++.|++.|+.++.+.+.+.+...+. .+|.... ..+++++|||.++.
T Consensus 246 P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 246 PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred CCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 6889888887765544443333321 2344444 34567889998763
No 150
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=78.43 E-value=7.3 Score=42.49 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=52.0
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEE-eCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVE-HEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
++||||-.+..+-++|++.+|++++..... ...+..|-.. .....-.+.+...+++++++ .++++.+ |.+|++
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~--~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~-id~iav 75 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDP--YKPPSGGIHPREAAEHHAEAIPKVIKEALEE---AGLKPED-IDLVAF 75 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEee--ccCCcCCCChHHHHHHHHHHHHHHHHHHHHH---cCCCHhh-CCEEEE
Confidence 689999999999999999667888766543 2233334221 11233455666777788776 6788889 999999
Q ss_pred cc
Q 009868 87 TN 88 (523)
Q Consensus 87 s~ 88 (523)
+.
T Consensus 76 ~~ 77 (535)
T PRK09605 76 SQ 77 (535)
T ss_pred CC
Confidence 85
No 151
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=78.36 E-value=12 Score=39.73 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=55.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCE--EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARP--IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i--~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
-+++||+|+||.|++++...|.- .......+. .|.. ...-..+++|+.+.+++...+++-... ...+ .=+|
T Consensus 87 ~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~--ip~~-~m~gt~~~Lfd~Ia~~l~~F~~~~~~~--~~~~--l~lg 159 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYA--IPEE-IMQGTGEELFDFIARCLADFLDKMGLK--GASK--LPLG 159 (474)
T ss_pred CEEEEecCCCceEEEEEEecCCcccceeeeeeEe--cCHH-HHcCchHHHHHHHHHHHHHHHHHhccc--cccc--cccc
Confidence 46789999999999999976642 222222222 1210 001156889999999999988763211 1111 2255
Q ss_pred EccccceeEEeeCCCCccccccccccccCC
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDART 115 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~ 115 (523)
++- ..+++. .+.--.-.+.|.....
T Consensus 160 FTF----SfP~~Q-~si~~g~L~~wTkGf~ 184 (474)
T KOG1369|consen 160 FTF----SFPCRQ-TSIDKGTLIRWTKGFK 184 (474)
T ss_pred eEE----eeeeee-cccccceEEEeccccc
Confidence 555 457766 4433334567875543
No 152
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=78.20 E-value=2 Score=43.37 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=33.6
Q ss_pred EEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHH
Q 009868 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESV 59 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~ 59 (523)
|||=||++...+.+|++|+++...+.|+.. +..+|..+.+.+
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~-------v~~~p~~iv~~l 42 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE-------VAKNPSIIVEEL 42 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHHH-------hhhCHHHHHHHH
Confidence 699999999999999999999888887763 456777655443
No 153
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.27 E-value=11 Score=36.19 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=41.2
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEE-EeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSH-QVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~-~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.+.++|||-|||.+|.+++|.++.+..+- +.+.. .. +=...++++-+. .++..++ |..|
T Consensus 2 ~m~fVGiDHGTsgi~~ai~d~e~~~~Fklgrae~~--------------~~--~ek~~L~~l~de---~~i~l~e-idli 61 (332)
T COG4020 2 TMMFVGIDHGTSGIKFAIYDGEKDPEFKLGRAELR--------------KV--AEKSLLRELEDE---ARIALEE-IDLI 61 (332)
T ss_pred ceEEEeecCCCcceEEEEEcCCCCceEEechhhhh--------------hh--hHHHHHHHhhHh---hCCcccc-ceEE
Confidence 34689999999999999999887665421 21111 11 012334444443 3566778 9999
Q ss_pred EEccccc
Q 009868 85 GLTNQRE 91 (523)
Q Consensus 85 gis~~~~ 91 (523)
+++--|.
T Consensus 62 altYsMG 68 (332)
T COG4020 62 ALTYSMG 68 (332)
T ss_pred EEeeccc
Confidence 8876544
No 154
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=76.51 E-value=9.7 Score=38.28 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=50.4
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeecc-CCCCeE-EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFY-PEAGWV-EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~-~~~g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|+||-.+..+-++|+|.+++++..........+ +..|-. +.....--+.+...+++++++ .++++++ |.+|+++
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~d-id~iav~ 76 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIE---SNVDKSE-IDLIAYT 76 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEEEe
Confidence 589988888999999865788877655443222 222321 223344455666677777766 6788889 9999987
Q ss_pred c
Q 009868 88 N 88 (523)
Q Consensus 88 ~ 88 (523)
.
T Consensus 77 ~ 77 (305)
T TIGR00329 77 Q 77 (305)
T ss_pred c
Confidence 6
No 155
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=18 Score=34.33 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHcCCCCC----HHHHHHHHHhcCCCCceEEEcCCC-CCCCCCCCCCCceeEEc----------CCCCCC
Q 009868 320 IAGAAVQWLRDSLGIISS----ASEIEELALQVNSTGGVYFVPAFN-GLFAPWWRDDARGVCIG----------ITRFTS 384 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~~----~~~l~~~a~~~~~~~gl~~~P~l~-G~r~P~~~~~arg~~~g----------l~~~~~ 384 (523)
.-|++++.|.+.+.+.++ | .++++|++- ...+=+||-- |.-..+ .|.+.+ .+...+
T Consensus 156 AvGNClDRFAR~lklsN~PsPGy-nieq~AK~g---k~~ieLPY~VKGMDvSf-----SGiLs~ie~~a~~~~~~~~~~t 226 (336)
T KOG2708|consen 156 AVGNCLDRFARVLKLSNDPSPGY-NIEQLAKKG---KNYIELPYTVKGMDVSF-----SGILSYIEDLAEELLKPSSEVT 226 (336)
T ss_pred hhhhhHHHHHHHhcCCCCCCCCc-CHHHHHHhc---cceeecceeeeccccch-----HHHHHHHHHHHhhhhccccccc
Confidence 358999999988765322 3 356666542 3466678752 222111 121111 122358
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG 447 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg 447 (523)
++|+..++.|-+.--+-++-|+.-...+ -+++.++||.--|..+.+|.+.+..
T Consensus 227 ~~DLCySLQEtvFamLVEiTERAMAh~~----------s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 227 KEDLCYSLQETVFAMLVEITERAMAHCG----------SKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CCcEEEEecccccHHHHHHHHHHHH
Confidence 9999999999876666666664322222 4689999999999999999998863
No 156
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=74.70 E-value=27 Score=33.39 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=75.1
Q ss_pred hhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC---CCCCCCCCceeEEc-----CC--C-CCCHH
Q 009868 318 IAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF---APWWRDDARGVCIG-----IT--R-FTSKA 386 (523)
Q Consensus 318 ~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r---~P~~~~~arg~~~g-----l~--~-~~~~~ 386 (523)
++.||..+.=+..++-...+|++|-+++..-..+.--+.+-.+.|.- .|. ..++.++-+| .. + ..++.
T Consensus 173 sslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~gl-ks~~iAssFGkVf~~r~k~le~F~p~ 251 (342)
T COG5146 173 SSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGL-KSDLIASSFGKVFHHRDKPLEEFTPS 251 (342)
T ss_pred cccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCC-CchhhHHHHHHHHHhhcCchhhcCcH
Confidence 44455555555555555678999999887532121112333344432 111 1122222222 21 1 26889
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhh---c-CCc----eeecCCCCc
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADL---L-GSP----VIRPADIET 458 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Adv---l-g~p----v~~~~~~e~ 458 (523)
|+.++++-.|.-.+-++.-...+. .. ++.|+..|...||.+..-..-|- . -.| ..+-...-.
T Consensus 252 di~~sll~aisnnigqiAyl~A~~--~n--------~qNIyfgGSf~rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegyl 321 (342)
T COG5146 252 DILASLLGAISNNIGQIAYLVARE--FN--------TQNIYFGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYL 321 (342)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHh--hc--------cceEEEeeeeccchhhhhhhhHHHHHhhcCcccceeeeeccchh
Confidence 999999988888776654333332 34 78999999888887765443332 1 233 222223445
Q ss_pred cHHHHHHH
Q 009868 459 TALGAAFA 466 (523)
Q Consensus 459 ~alGaA~l 466 (523)
+|+||-++
T Consensus 322 Ga~GAf~~ 329 (342)
T COG5146 322 GAIGAFYL 329 (342)
T ss_pred hHHHHHhh
Confidence 67777664
No 157
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=73.47 E-value=21 Score=32.36 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=34.0
Q ss_pred ceEEEEecCCCCceEEEEcCCCCE---EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARP---IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i---~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
+.+||||-|++++=.++++.+|+. +....+.++ . ..+..+=+..+.+.+.+++++
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~----~----~~~~~~Rl~~I~~~l~~~i~~ 59 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTP----S----DLDLPERLKQIYDGLSELIDE 59 (164)
T ss_pred CEEEEEccccCceeEEEEEecCCeEEEEEeeEEECC----C----CCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999987763 232333322 1 112222244566667777765
No 158
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=71.85 E-value=17 Score=36.70 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=49.0
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeee-eeccCCCCeE-EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEF-TQFYPEAGWV-EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~-~~~~~~~g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|+||--+..+-++|+|.+++++....... ....+..|-. +.....--+.+...+++++++ .+++..+ |.+|++
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~-id~iav 76 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAE---AGLTLSD-IDAIAV 76 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEEE
Confidence 479999999999999986555776654422 1112233322 222334455666677777766 6778889 999998
Q ss_pred cc
Q 009868 87 TN 88 (523)
Q Consensus 87 s~ 88 (523)
+.
T Consensus 77 ~~ 78 (314)
T TIGR03723 77 TA 78 (314)
T ss_pred ec
Confidence 76
No 159
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.67 E-value=6.5 Score=43.44 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=41.8
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCc-ee-ecCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSP-VI-RPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~p-v~-~~~~~e~~alGaA~lA~~~~G 472 (523)
|+.|++.||++|-|....++.+..+.. +- -.+..|++++||++-|+.-..
T Consensus 365 In~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk 416 (902)
T KOG0104|consen 365 INQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK 416 (902)
T ss_pred hheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc
Confidence 889999999999999999999998744 32 356789999999999886543
No 160
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=71.08 E-value=7.5 Score=37.66 Aligned_cols=46 Identities=24% Similarity=0.199 Sum_probs=32.7
Q ss_pred EEEecCcc-ccHHHHHHHHhhc----C---CceeecCCCCccHHHHHHHHHHhc
Q 009868 426 LRVDGGAT-VNNLLMQIQADLL----G---SPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 426 i~~~GG~a-~s~~~~qi~Advl----g---~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
|-+.|+.- +.|.+.+.+.+.+ + .+|......+++.+|||++|+++.
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SSTHHHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEecCchHHHHHHHHHHhc
Confidence 45566664 5777766666554 3 477777788999999999999873
No 161
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.84 E-value=13 Score=37.33 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=38.7
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEE---EEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGS---HQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS 79 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~---~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (523)
..+|||||++++|++-....|+-..- ...+.|...-.+| .-.|++. +.+.|++++.+ +++..++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg-~ivd~~a----v~~~Lk~ala~---~gi~~k~ 77 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADG-KIVDYDA----VASALKRALAK---LGIKSKN 77 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccC-CcccHHH----HHHHHHHHHHh---cCcchhh
Confidence 58999999999999999976654332 3334432222233 2346655 55666666665 4554444
No 162
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=70.70 E-value=15 Score=37.32 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=48.5
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEE-eCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVE-HEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
||||-.+..+-++|++.+++++...+... ..+..|... .....--+.+...+++++++ .++++++ |.+|+++.
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~d-id~Iavt~ 74 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTY--VPEKGGIHPREAAEHHAEVAPKLIKEALEE---AGVSLED-IDAVAFSQ 74 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeec--ccCcCCcChhHHHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEEEec
Confidence 58888777888999987787877554433 223334331 22233344566667777776 6788889 99999876
No 163
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=70.33 E-value=8.1 Score=37.27 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=41.4
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC---C----CccHHHHHH
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD---I----ETTALGAAF 465 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~---~----e~~alGaA~ 465 (523)
++.+.-.++..++...+..| .++|+.+|=| +++.|.-++.+|..+...+. . -+.|.|+|.
T Consensus 259 ~~~~l~~l~e~I~~~a~r~g----------L~~Vv~~GlG---efLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a~ 325 (330)
T COG1548 259 YNALLELLAENIEEKAKRYG----------LNTVVATGLG---EFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAAK 325 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcC----------hhhhhhccch---HHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHHH
Confidence 33333444555555444344 5688888866 89999999999988876542 2 256778877
Q ss_pred HHH
Q 009868 466 AAG 468 (523)
Q Consensus 466 lA~ 468 (523)
+..
T Consensus 326 L~~ 328 (330)
T COG1548 326 LLE 328 (330)
T ss_pred HHh
Confidence 653
No 164
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=70.04 E-value=6.4 Score=33.49 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=24.8
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCe---EEeCHHHHHHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGW---VEHEPMEILESVRVCMAKA 66 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~---~e~d~~~~~~~~~~~l~~~ 66 (523)
+++||+|++.++++++.. ++.......++. ..|..|. .-.|.+++-+++...+.++
T Consensus 1 i~~iDiGs~~~~~~i~~~-~~~~~~~vl~~g-~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED-GSDGYIRVLGVG-EVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET-TEEEEEEEES-----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe-CCCCcEEEEEEe-cccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 468999999999999975 333333333332 2233332 1234455545555444443
No 165
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=69.09 E-value=10 Score=36.85 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|.+.+...++-|.++.++..++.+++..+. -..++++||.++ ++.+.+. .+.. + ..-+..
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~---------~~~~vltGg~~~------~~~~~~~-~~~~-d-~~Ltl~ 242 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKG---------GDAVVLTGGLAK------LLLDELD-IDIF-D-PNLTLL 242 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCC---------CCeEEEeCCchH------hhhhhcc-ccee-C-cchhHH
Confidence 46889999999999999999999999875443 367999999764 3444444 2222 2 345777
Q ss_pred HHHHHHH
Q 009868 462 GAAFAAG 468 (523)
Q Consensus 462 GaA~lA~ 468 (523)
|-+.++.
T Consensus 243 Gl~~i~~ 249 (251)
T COG1521 243 GLALLLA 249 (251)
T ss_pred HHHHHhh
Confidence 7776654
No 166
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=67.61 E-value=20 Score=31.91 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=32.0
Q ss_pred EEEEecCCCCceEEEEcCCCCE---EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYDHQARP---IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i---~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
+||||-|++++-.++++.+++- +......++ ...+..+=+..+.+.+.+++++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~--------~~~~~~~Rl~~I~~~l~~li~~ 56 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS--------SKDSLPERLKEIYEELEELIEE 56 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE-----------S--HHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC--------CCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999986643 333444433 1223334455677777788776
No 167
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=67.22 E-value=15 Score=36.50 Aligned_cols=85 Identities=19% Similarity=0.042 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhcccccccc----ccCccEEEEecCccc-------cHHHHHHHHh------
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD----AKSEFLLRVDGGATV-------NNLLMQIQAD------ 444 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~----~~~~~~i~~~GG~a~-------s~~~~qi~Ad------ 444 (523)
..+++++-.+.++|-.-.-++.++.+....|.. .++ .+--.-|+++||... +.-|++-+.|
T Consensus 216 ~~~p~~It~~al~g~d~~a~~tl~lF~~~lG~~--AGdlAL~lgarGGVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa 293 (320)
T COG0837 216 DLTPAAITERALAGGDALARETLSLFCAILGRV--AGDLALTLGARGGVYIAGGIVPRILEALKASGFRARFEDKGRMSA 293 (320)
T ss_pred cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--HHhHHHHhhccCcEEEcCCchHhHHHHHhcchHHHHhhhcCchHH
Confidence 356788888888876666666666665432210 000 000356999999862 2334443333
Q ss_pred -hcCCceeecCCCCccHHHHHHHHH
Q 009868 445 -LLGSPVIRPADIETTALGAAFAAG 468 (523)
Q Consensus 445 -vlg~pv~~~~~~e~~alGaA~lA~ 468 (523)
+=..||++.-.+..+.+|+|..+.
T Consensus 294 ~l~~IPV~vi~~~~~gL~Gaa~~~~ 318 (320)
T COG0837 294 YLADIPVYVILHPQPGLLGAAAALR 318 (320)
T ss_pred HHhhCCEEEEecCCchHHHHHHHhc
Confidence 235899999888889999988653
No 168
>PRK09557 fructokinase; Reviewed
Probab=66.00 E-value=25 Score=34.99 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---------CCceeecC-CCCc
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---------GSPVIRPA-DIET 458 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---------g~pv~~~~-~~e~ 458 (523)
++.+++-.+..+...+-.+... .. ++.|++.||.++.+.+...+-..+ ..+|..+. ..++
T Consensus 221 a~~~l~~~~~~La~~l~~l~~~--ld--------P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a 290 (301)
T PRK09557 221 AELAFRRYEDRLAKSLAHVINI--LD--------PDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSS 290 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCch
Confidence 3444554444444444444322 34 688999888887554433222222 23344444 4567
Q ss_pred cHHHHHHHH
Q 009868 459 TALGAAFAA 467 (523)
Q Consensus 459 ~alGaA~lA 467 (523)
+++|||.++
T Consensus 291 ~~~GAa~~~ 299 (301)
T PRK09557 291 GVRGAAWLW 299 (301)
T ss_pred hhhhhhHhh
Confidence 788999865
No 169
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=65.94 E-value=22 Score=33.33 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=42.4
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
+|+||-.|..+-+++++ +++++....... ...--+.+...+++++++ .++..++ |.+|+++.
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~-------------~~~h~~~l~~~i~~~l~~---~~~~~~~-i~~iav~~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEA-------------GRNHSEILLPMIEELLAE---AGLSLQD-LDAIAVGV 62 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehh-------------hHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEEEec
Confidence 47899999999999998 677776443221 222333455566667666 6778888 99998865
No 170
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=6.4 Score=43.31 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.4
Q ss_pred ceEEEEecCCCCceEEEEcCCC
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA 28 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g 28 (523)
..++|||+||||+.+++++..+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4689999999999999998664
No 171
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=65.54 E-value=17 Score=38.63 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=33.3
Q ss_pred EEEecCcc-ccHHHHHHHHhhcC------CceeecCCCCccHHHHHHHHHHhcc
Q 009868 426 LRVDGGAT-VNNLLMQIQADLLG------SPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 426 i~~~GG~a-~s~~~~qi~Advlg------~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
|-+.|+.- ..|.+.+.+...+. ..|.+....+.+.+|||++|+++..
T Consensus 416 VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 416 VGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred EEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCCCccccHHHHHHHHhh
Confidence 33444444 36777666665554 5677778889999999999999853
No 172
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=65.41 E-value=21 Score=37.25 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcc-ccHHHHHHHHhhcC
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGAT-VNNLLMQIQADLLG 447 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~qi~Advlg 447 (523)
+-++|..+|+++..+-.|.....-. ++-|+++||.. +|+.+++.+.+-+.
T Consensus 299 ~lA~d~f~yri~k~Iga~~a~L~g~--------vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 299 KLALDVFVYRLAKYIGSYAAALNGR--------LDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--------CCEEEEcCccccCCHHHHHHHHhhhh
Confidence 4478888999988887775433113 89999999999 89999888887765
No 173
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=64.87 E-value=12 Score=37.79 Aligned_cols=45 Identities=31% Similarity=0.252 Sum_probs=26.7
Q ss_pred cEEEEecCcc-ccHHHHH------HH------Hhhc-CCceeecCCCCccHHHHHHHHH
Q 009868 424 FLLRVDGGAT-VNNLLMQ------IQ------ADLL-GSPVIRPADIETTALGAAFAAG 468 (523)
Q Consensus 424 ~~i~~~GG~a-~s~~~~q------i~------Advl-g~pv~~~~~~e~~alGaA~lA~ 468 (523)
.-|++.||.+ |+..+.+ -+ .+++ ..||.+....+.+.+|||..|.
T Consensus 256 gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 256 GGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp CEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred eeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 5699999998 4433332 11 1233 5799999989999999998875
No 174
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=64.57 E-value=9.2 Score=41.03 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=44.9
Q ss_pred ceEEEEecCCCCceEEEEcCC-CC--EEEEEEeeeee--ccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCc
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ-AR--PIGSHQVEFTQ--FYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGL 81 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~-g~--i~~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I 81 (523)
+.+.+||+||-|++.++++.. |. ++...+..... -....| .-+++. .+...++++.+.+.+. +..+++ |
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g--~L~~ea-i~R~~~aL~~f~e~~~--~~~~~~-v 76 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATG--NLSEEA-IERALSALKRFAELLD--GFGAEE-V 76 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccC--CcCHHH-HHHHHHHHHHHHHHHh--hCCCCE-E
Confidence 457889999999999999965 43 23222222111 111222 223333 4445566766665543 334567 8
Q ss_pred eEEEEcccc
Q 009868 82 KAIGLTNQR 90 (523)
Q Consensus 82 ~aIgis~~~ 90 (523)
.+|+.++.+
T Consensus 77 ~~vATsA~R 85 (492)
T COG0248 77 RVVATSALR 85 (492)
T ss_pred EEehhHHHH
Confidence 888887755
No 175
>PTZ00107 hexokinase; Provisional
Probab=64.52 E-value=26 Score=37.36 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=34.2
Q ss_pred cEEEEecCccc-cHHHHHH----HHhhcC---CceeecCCCCccHHHHHHHHHHhc
Q 009868 424 FLLRVDGGATV-NNLLMQI----QADLLG---SPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 424 ~~i~~~GG~a~-s~~~~qi----~Advlg---~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
-.|-+.|+.-+ .|.+.+. +.++++ .+|......+++.+|||++||.+.
T Consensus 406 ~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 406 ATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDGSGKGAAIIAAMVA 461 (464)
T ss_pred eEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccCchHHHHHHHHHHhc
Confidence 45677888873 5555444 444443 467777788899999999999874
No 176
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=64.11 E-value=11 Score=37.67 Aligned_cols=72 Identities=24% Similarity=0.193 Sum_probs=21.9
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccE--EEEecCccccHHHHHHHHhhcCCceeecC-C-CCcc
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL--LRVDGGATVNNLLMQIQADLLGSPVIRPA-D-IETT 459 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~--i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~-~e~~ 459 (523)
+..++.+++++-+...+.+.++.+....+.. ... +++.||++ +++..-+|+.+|.+..+++ . .-.+
T Consensus 208 ~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~--------~~~~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~ 277 (290)
T PF01968_consen 208 SVEEAAEGIVRIANENMADAIREVSVERGYD--------PRDFPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVAN 277 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEE-------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------ccccccccccccc--cccccccccccccccccccccccccc
Confidence 4788888888888888887777764333444 333 45555554 7899999999998865544 3 4567
Q ss_pred HHHHHH
Q 009868 460 ALGAAF 465 (523)
Q Consensus 460 alGaA~ 465 (523)
|+|+|+
T Consensus 278 A~Ga~~ 283 (290)
T PF01968_consen 278 AIGAAV 283 (290)
T ss_dssp ------
T ss_pred cccccc
Confidence 888865
No 177
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=63.49 E-value=24 Score=36.74 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcc-ccHHHHHHHHhhcC
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGAT-VNNLLMQIQADLLG 447 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~qi~Advlg 447 (523)
+-++|..+|.++..+-.+....+-. ++-|+++||.. .|+.+++.+.+-++
T Consensus 303 ~lA~~~f~yri~k~Iga~~a~L~G~--------vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 303 QLAIKMYVHRIAKYIGSYIASLEGN--------LDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3478888999988887775444433 79999999999 78888887777654
No 178
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=62.25 E-value=6.1 Score=44.04 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=17.3
Q ss_pred eEEEEecCCCCceEEEEcC
Q 009868 8 FIGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~ 26 (523)
.++|||+|||++++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999973
No 179
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=61.44 E-value=23 Score=37.39 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.8
Q ss_pred EecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHH-HHHHHHHHHHH
Q 009868 12 IDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAGWVEHEPMEILES-VRVCMAKALDK 69 (523)
Q Consensus 12 IDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~-~~~~l~~~~~~ 69 (523)
+|+|+|.+|+.+||. +++++...+..+|+. + +++..- +.++++++.++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt-------~---~dv~~G~~~~a~~~l~~~ 50 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIE-------S---DHLAGGFFNKANEKLNED 50 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccc-------h---hhhhcchHHHHHHHHHHh
Confidence 699999999999995 577777777766531 2 244444 55566666555
No 180
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=61.36 E-value=17 Score=31.64 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=25.1
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeee
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEF 38 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~ 38 (523)
++|||+|-...-++++|.+|.++....+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEec
Confidence 589999999999999999997776655544
No 181
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=61.28 E-value=9.1 Score=38.30 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=29.6
Q ss_pred ccE-EEEecCccccHHHHHHHHhhcCCceeecCCC
Q 009868 423 EFL-LRVDGGATVNNLLMQIQADLLGSPVIRPADI 456 (523)
Q Consensus 423 ~~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~ 456 (523)
+++ ++++||+|.-.-+-+.+++-++.||.+.+.+
T Consensus 283 ~ergivltGGGalLrglD~~i~~et~~pv~ia~~p 317 (342)
T COG1077 283 VERGIVLTGGGALLRGLDRLLSEETGVPVIIADDP 317 (342)
T ss_pred hhCceEEecchHHhcCchHhHHhccCCeEEECCCh
Confidence 566 9999999987788999999999999997643
No 182
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=61.10 E-value=11 Score=39.84 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCceEEEEecCCCCceEEEEcC-CCCEEEEEEe
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDH-QARPIGSHQV 36 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~ 36 (523)
.+.|=+++|+|||.+++-++|. +|+++++..-
T Consensus 162 ~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T 194 (614)
T COG3894 162 NEAYGVAVDLGTSGIRAQLVDLKSGEVVATVIT 194 (614)
T ss_pred ceeeeeEEecccceeeeEEEeccCCcEEEeeec
Confidence 4568899999999999999996 7999887543
No 183
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=60.70 E-value=22 Score=31.67 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=19.7
Q ss_pred ceEEEEecCCC----CceEEEEcCCCCEEEEEEe
Q 009868 7 VFIGAIDQGTT----STRFIIYDHQARPIGSHQV 36 (523)
Q Consensus 7 ~~~lgIDiGtt----~~K~~l~d~~g~i~~~~~~ 36 (523)
..+++|-.|.. .+.++++|++|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 45788888744 5899999999999987776
No 184
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=60.63 E-value=29 Score=30.24 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEee
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVE 37 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~ 37 (523)
...+++|||=|||.- ++++|.+|+++...+..
T Consensus 30 ~~~lIVGiDPG~ttg-iAildL~G~~l~l~S~R 61 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTG-IAILDLDGELLDLKSSR 61 (138)
T ss_pred CCCEEEEECCCceeE-EEEEecCCcEEEEEeec
Confidence 345789999999866 55679999999876654
No 185
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=23 Score=33.73 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=44.6
Q ss_pred eEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
.+|+||..|..+-+++++. +++++.+...+.+ ++ .-+.+...+++++.+ .+....+ +.+|.+
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~----------r~---hse~l~~~i~~ll~~---~~~~~~d-ld~iav 64 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK----------RN---HAERLMPMIDELLKE---AGLSLQD-LDAIAV 64 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEecc----------cc---HHHHHHHHHHHHHHH---cCCCHHH-CCEEEE
Confidence 4789999999999888886 6788877666554 22 122344555566655 5677778 999988
Q ss_pred cc
Q 009868 87 TN 88 (523)
Q Consensus 87 s~ 88 (523)
+.
T Consensus 65 ~~ 66 (220)
T COG1214 65 AK 66 (220)
T ss_pred cc
Confidence 65
No 186
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=59.16 E-value=27 Score=36.43 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcC-Cceee
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLG-SPVIR 452 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg-~pv~~ 452 (523)
++-++|..+|+++..+-.+.....-. ++.|+++||... ++..++++.+.+. .+|.+
T Consensus 295 A~la~d~~~y~i~k~Ig~~~a~l~G~--------vDaivfTGGige~~~~vr~~~~~~l~~~gv~l 352 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAYAAVLEGG--------VDAIVFTGGIGENSALVRERICRKLWFLGVKL 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS---------SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC--------CCEEEEccccccchHHHHHHHHhhcCcCCeEe
Confidence 44568888899888887775433113 899999999996 5667788888765 56665
No 187
>PRK14878 UGMP family protein; Provisional
Probab=58.29 E-value=35 Score=34.57 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=47.3
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEe-CHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEH-EPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~-d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
||||--+.-+-++|+| ++++++...... ..+..|.... -...-.+.+...+++++++ .++++++ |.+|+++.
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~---a~~~~~d-id~Iavt~ 73 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEK---AGISIED-IDAVAVSQ 73 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEEEec
Confidence 5788878788889997 455776554433 2333444322 2233345566777777776 6788889 99999976
No 188
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=57.51 E-value=46 Score=32.92 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=38.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHH-HHHHHhhc------CCceeecC-CCCccH
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLL-MQIQADLL------GSPVIRPA-DIETTA 460 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~-~qi~Advl------g~pv~~~~-~~e~~a 460 (523)
++.+++-.+..+...+..+... .. ++.|++.|+.+..+.+ .++...+- ..++.... ..++++
T Consensus 210 a~~~~~~~~~~la~~l~~l~~~--~d--------pe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~ 279 (291)
T PRK05082 210 AQALINRSAQAIARLIADLKAT--LD--------CQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGL 279 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhh
Confidence 3444555555555555444332 34 6889998887755443 33333222 12344444 356778
Q ss_pred HHHHHHH
Q 009868 461 LGAAFAA 467 (523)
Q Consensus 461 lGaA~lA 467 (523)
+|||.++
T Consensus 280 ~GAa~~~ 286 (291)
T PRK05082 280 LGAALWA 286 (291)
T ss_pred hhHHHHh
Confidence 8999875
No 189
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=57.39 E-value=57 Score=29.07 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=33.0
Q ss_pred EEEEecCCCCceEEEEcCCCCEE---EEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPI---GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
+||||-|++++=.++++.+++.+ ....+.++ + ..+..+=+..+.+.+.+++..
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~-----~---~~~~~~rl~~I~~~l~~~i~~ 57 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTS-----S---DAPLPSRLKTIYDGLNEVIDQ 57 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECC-----C---CCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998654332 23333332 1 122333355566777777765
No 190
>PRK07058 acetate kinase; Provisional
Probab=56.76 E-value=31 Score=35.78 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcc-ccHHHHHHHHhhcC
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGAT-VNNLLMQIQADLLG 447 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~qi~Advlg 447 (523)
.+-++|..+|+++..+-.+....| . ++.|+++||.. +|+.+++.+.+-+.
T Consensus 294 A~lA~d~f~yri~k~IGa~~a~Lg-~--------vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARLAATLG-G--------LDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCccccCcHHHHHHHHhhhh
Confidence 455789999999998887765444 3 89999999999 88888887777665
No 191
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=56.72 E-value=22 Score=38.35 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=51.3
Q ss_pred EecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHHHHHHH
Q 009868 428 VDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAES 507 (523)
Q Consensus 428 ~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~~ 507 (523)
+--+.+|-.++.|++-|++.=.+.++ ...|+.|||-++.+. +|.|...+-. ...+ .+-+|.|+....=-.+-.+.
T Consensus 98 Lree~tRYqfflQlKqDll~GRL~Cp-~~~AaeLaAl~lQsE-LGDYn~~~Ht-~~yV--SefRf~p~Qte~LE~~I~e~ 172 (616)
T KOG3530|consen 98 LREENTRYQFFLQLKQDLLSGRLYCP-FETAAELAALILQSE-LGDYNEEEHT-GGYV--SEFRFLPNQTEELEERIFEL 172 (616)
T ss_pred hhchhhHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHH-hcCCChhhcc-ccce--eeeEecccccHHHHHHHHHH
Confidence 34566888999999999998778774 456788998877765 7877543222 2332 34578888764211234555
Q ss_pred HHHH
Q 009868 508 WCRA 511 (523)
Q Consensus 508 ~~~~ 511 (523)
|+++
T Consensus 173 hK~~ 176 (616)
T KOG3530|consen 173 HKEL 176 (616)
T ss_pred HHHh
Confidence 5543
No 192
>CHL00094 dnaK heat shock protein 70
Probab=56.50 E-value=8.8 Score=42.71 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARP 30 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i 30 (523)
+++|||+|||++++++++ +|++
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~~ 24 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME-GGKP 24 (621)
T ss_pred ceEEEEeCcccEEEEEEE-CCEE
Confidence 689999999999999996 4543
No 193
>PRK13410 molecular chaperone DnaK; Provisional
Probab=56.39 E-value=9.7 Score=42.76 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.5
Q ss_pred eEEEEecCCCCceEEEEcCCCCE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARP 30 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i 30 (523)
+++|||+|||+.++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC-CeE
Confidence 5899999999999999874 543
No 194
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=55.70 E-value=11 Score=37.39 Aligned_cols=44 Identities=23% Similarity=0.145 Sum_probs=32.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAA 467 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA 467 (523)
.+.|.+.|.....+++.+.++- +|.++...+..+++.-|-..+|
T Consensus 243 ~~~v~LiG~~~L~~~Y~~AL~~-~G~~~~~~d~~~~~~~Gl~~ia 286 (287)
T PF05035_consen 243 GQPVALIGSGPLCALYARALAA-QGLPVRRVDADEAALAGLWAIA 286 (287)
T ss_dssp SSEEEEEE-HHHHHHHHHHHHH-TT-EEEEEEHHHHHHHHHHHHH
T ss_pred CCeEEEEeCHHHHHHHHHHHHH-CCCCceeeCHHHHHHHHHHHHh
Confidence 5889999998888888777664 4889988777777777766554
No 195
>PRK11678 putative chaperone; Provisional
Probab=55.04 E-value=8.9 Score=40.81 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.5
Q ss_pred EEEEecCCCCceEEEEcCCCC
Q 009868 9 IGAIDQGTTSTRFIIYDHQAR 29 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~ 29 (523)
++|||+||||.-+++++ +|+
T Consensus 2 ~iGID~GTtNs~va~~~-~~~ 21 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGK 21 (450)
T ss_pred eEEEecCccceeeEEee-CCc
Confidence 58999999999999998 454
No 196
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=54.76 E-value=21 Score=30.22 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.7
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 50 HEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 50 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
.+++++++++.+.+.+++++ +++++++ |.+|=||.+
T Consensus 13 n~~e~I~~at~eLl~~i~~~---N~l~~~d-IvSi~FT~T 48 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILER---NELSPED-IVSIIFTVT 48 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH---TT--GGG-EEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHH-EEEEEEEeC
Confidence 56899999999999999988 7899999 999988774
No 197
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=54.27 E-value=26 Score=32.66 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=14.9
Q ss_pred EEeeCCCCcccccccccccc
Q 009868 94 VLWSKSTGCPLYNAIVWMDA 113 (523)
Q Consensus 94 v~~d~~~g~~l~~~i~w~D~ 113 (523)
+.+|+ +|+|+.-+.-|.|.
T Consensus 44 ~vlD~-d~~Pvag~~~~adv 62 (277)
T COG4820 44 MVLDR-DGQPVAGCLDWADV 62 (277)
T ss_pred EEEcC-CCCeEEEEehhhhh
Confidence 45787 89999888888764
No 198
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=53.92 E-value=43 Score=35.52 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=46.7
Q ss_pred cCCceEEEEecCCCCceEEEEc---CCCC-EEEEEEeeeeeccCCCCe--EEeCHHHHHHHHHHHHHHHHHHH
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYD---HQAR-PIGSHQVEFTQFYPEAGW--VEHEPMEILESVRVCMAKALDKA 70 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d---~~g~-i~~~~~~~~~~~~~~~g~--~e~d~~~~~~~~~~~l~~~~~~~ 70 (523)
+.-+|-+.||.|++.+|.-|+. ++|+ ++......+.-....||. ...+|+..-+.+..+++-+.+++
T Consensus 6 ~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~I 78 (501)
T KOG1386|consen 6 PNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHI 78 (501)
T ss_pred CcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhC
Confidence 3557889999999999999997 4677 344433333334455663 45789998888887777766553
No 199
>PRK13411 molecular chaperone DnaK; Provisional
Probab=53.83 E-value=11 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.1
Q ss_pred eEEEEecCCCCceEEEEcCCCC
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR 29 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~ 29 (523)
.++|||+|||+.++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG-GK 23 (653)
T ss_pred cEEEEEeCcccEEEEEEEC-CE
Confidence 5899999999999999864 54
No 200
>PRK13328 pantothenate kinase; Reviewed
Probab=52.94 E-value=74 Score=31.03 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
.+|..-|...++-|.+..+..+++.+++..+.+ -.|+++||.+ ++++..+..+... .++-...
T Consensus 183 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~---------~~vi~TGGda------~~l~~~l~~~~~~--~p~LvL~ 245 (255)
T PRK13328 183 DDTPDAISAGCLAAQAGLIERAWRDLAARWQAP---------VRLVLSGGAA------DAVAPALTVPHTR--HDNLVLL 245 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCH------HHHHhhCCCCCEE--CCCcHHH
Confidence 568888999999999999999998887755433 4699999976 4566666776665 3557788
Q ss_pred HHHHHHHH
Q 009868 462 GAAFAAGL 469 (523)
Q Consensus 462 GaA~lA~~ 469 (523)
|-+.++..
T Consensus 246 GL~~i~~~ 253 (255)
T PRK13328 246 GLALIAAA 253 (255)
T ss_pred HHHHHHhh
Confidence 88777653
No 201
>PRK12440 acetate kinase; Reviewed
Probab=52.80 E-value=43 Score=34.86 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHH-HHHHHHhhcC
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNL-LMQIQADLLG 447 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~-~~qi~Advlg 447 (523)
++-++|..+|.++..+-.+.-..+ . ++.|+++||...|.. +++.+.+-++
T Consensus 296 A~lA~d~f~yri~k~Ig~~~a~l~-g--------vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 296 ATLAFEVFTYRVAKYIASYLAALD-S--------LDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCccccCcHHHHHHHHhhhh
Confidence 344788888988888877755444 4 899999999997655 6666666554
No 202
>PRK07157 acetate kinase; Provisional
Probab=52.48 E-value=43 Score=34.87 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=37.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHH-HHHHHHhhcC
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNL-LMQIQADLLG 447 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~-~~qi~Advlg 447 (523)
.+-++|..+|.++..+-.+....+-. ++.|+++||...|.. +++.+.+-++
T Consensus 295 A~lA~d~f~yri~k~Ig~~~a~L~G~--------vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 295 AKFALDLYAQKIVDYLANYINKIGKK--------IDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEECCccccCcHHHHHHHHhhcc
Confidence 33478888899888887775444433 899999999997665 6766666554
No 203
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=52.38 E-value=89 Score=32.08 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=45.9
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHH---HHHHHHHHHHhhCCCCcccCceEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR---VCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+|.|..|+||+|++||+.+++++.+....... ..+ +.+.+.+++. +.+.+++++ +++...+ |.+|
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~---~~~----~~~~~~~q~~~r~~~i~~~l~~---~~~~~~~-i~av- 69 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVE---ELG----RFKNVIDQFEFRKQVILQFLEE---HGISISK-LDAV- 69 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHH---Hhc----ccccHHHHHHHHHHHHHHHHHH---cCCCccc-ccEE-
Confidence 68899999999999999999887654443311 111 2223344444 444444443 5665667 8877
Q ss_pred EccccceeEEeeC
Q 009868 86 LTNQRETTVLWSK 98 (523)
Q Consensus 86 is~~~~~~v~~d~ 98 (523)
+++.+++.+-.
T Consensus 70 --~~RgG~~~~v~ 80 (351)
T TIGR02707 70 --VGRGGLLKPIP 80 (351)
T ss_pred --EECCCCCceec
Confidence 44444554433
No 204
>PRK12440 acetate kinase; Reviewed
Probab=52.37 E-value=21 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=24.9
Q ss_pred cCCceEEEEecCCCCceEEEEcC-CCCEEEEEE
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDH-QARPIGSHQ 35 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~ 35 (523)
|+++++|.|..|+||+|..|||. +.+++.+..
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~ 33 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGL 33 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEE
Confidence 34568999999999999999995 445565543
No 205
>PRK12379 propionate/acetate kinase; Provisional
Probab=52.01 E-value=48 Score=34.52 Aligned_cols=48 Identities=8% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhc
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLL 446 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advl 446 (523)
+=++|..+|+++..+-.+.-..+ . ++.|+++||... ++..++.+.+-|
T Consensus 294 ~lA~d~f~yri~k~IGa~~a~L~-~--------vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 294 QLAIKTFVHRIARHIAGHAASLH-R--------LDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCccccCcHHHHHHHHhhh
Confidence 34788889999888877765445 4 899999999995 455555555544
No 206
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.85 E-value=40 Score=32.80 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.4
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRV 61 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~ 61 (523)
-.+.||+|+..+-++++|++ +|.+.....+. ..+|+++-+.+.+
T Consensus 228 palvVd~GngHttaalvded-RI~gv~EHHT~---------~Lspekled~I~r 271 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RIVGVYEHHTI---------RLSPEKLEDQIIR 271 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eEEEEeecccc---------cCCHHHHHHHHHH
Confidence 36779999999999999987 88876544443 3467665554443
No 207
>PRK13329 pantothenate kinase; Reviewed
Probab=51.68 E-value=82 Score=30.62 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|...++-|++..+..+++.+++..+.+ -.|+++||.+ ++++..+..++.+ .++-...
T Consensus 176 ~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~---------~~vilTGGda------~~l~~~l~~~~~~--~~~LvL~ 238 (249)
T PRK13329 176 TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAE---------PECLLTGGAA------WKLAPSLTVPFEL--VDNLVLD 238 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCH------HHHHhhcCCCCEE--CCCcHHH
Confidence 478899999999999999999999987654332 3699999976 4567777777766 3556777
Q ss_pred HHHHHHHH
Q 009868 462 GAAFAAGL 469 (523)
Q Consensus 462 GaA~lA~~ 469 (523)
|-..++..
T Consensus 239 GL~~i~~~ 246 (249)
T PRK13329 239 GLLVIAAR 246 (249)
T ss_pred HHHHHHhh
Confidence 87776643
No 208
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=51.62 E-value=14 Score=41.40 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=17.1
Q ss_pred eEEEEecCCCCceEEEEcC
Q 009868 8 FIGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~ 26 (523)
.++|||+|||++++++++.
T Consensus 5 ~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 5 PAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred cEEEEEeCcccEEEEEEeC
Confidence 4899999999999999864
No 209
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=51.49 E-value=67 Score=31.55 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=59.6
Q ss_pred chhHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCH----HHHHHHHHh
Q 009868 320 IAGAAVQWLRDSLGIISS-ASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSK----AHIARAVLE 394 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~~-~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~----~~l~rAv~E 394 (523)
..|..++-..+.++.... -..+++++.+. +.+- +|.- ..+..=+|.|+.....+ +++.+++.+
T Consensus 136 ~~ge~~dk~~~~l~l~~~~g~~le~la~~~---~~~~-~p~~--------~~~~~~sFsG~~t~~~~~i~~~~iA~s~q~ 203 (268)
T PF00814_consen 136 AIGEAFDKVARLLGLPYPGGPALEKLASEG---EAFK-FPRP--------LKNCDFSFSGLKTAVYRLIEKADIAASFQE 203 (268)
T ss_dssp CHHHHHHHHHHHTT--SSHHHHHHHHHCT----S-------S--------EETTEEEEHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccHHHHhhHHHHhccccccCcHHHHHHHhC---Ccce-eccc--------eeeeeEEEEcccHHHHHHhhhhHHHHHHHH
Confidence 357788877777765322 23456666432 2111 2211 01123355665432211 556677777
Q ss_pred hhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc--CCceeecC
Q 009868 395 SMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL--GSPVIRPA 454 (523)
Q Consensus 395 gia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl--g~pv~~~~ 454 (523)
.++-.+...+....+. .. ++.|.++||.+.|..+++.+.+.. +.++..+.
T Consensus 204 ~~~~~l~~~~~~a~~~--~~--------~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 204 AIADHLAKKAPRALEK--PR--------AKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHH--HT--------CSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred HHHHHHHHHHHHHHHh--hc--------ccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 6665554444433221 23 789999999999999998876554 66666654
No 210
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=51.48 E-value=52 Score=32.90 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc-HHHHHHHHhhcC----------CceeecC-CC
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN-NLLMQIQADLLG----------SPVIRPA-DI 456 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~qi~Advlg----------~pv~~~~-~~ 456 (523)
++.+++-.+..+-..+..+.. -.. ++.|++.|+.++. +.+.+.+-..+. .+|..+. ..
T Consensus 228 a~~i~~~~~~~L~~~i~~~~~--~~d--------P~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~ 297 (318)
T TIGR00744 228 AVDSYREVARWAGAGLADLAS--LFN--------PSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGN 297 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhC--------CCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCC
Confidence 344555555555555544433 234 6889888888763 444443332221 2345544 35
Q ss_pred CccHHHHHHHHH
Q 009868 457 ETTALGAAFAAG 468 (523)
Q Consensus 457 e~~alGaA~lA~ 468 (523)
+++++|||.++.
T Consensus 298 ~~~~~Gaa~~~~ 309 (318)
T TIGR00744 298 DAGLVGAADLAR 309 (318)
T ss_pred chhhHHHHHHHH
Confidence 577899998765
No 211
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=51.20 E-value=14 Score=41.36 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=17.9
Q ss_pred ceEEEEecCCCCceEEEEcC
Q 009868 7 VFIGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~ 26 (523)
..++|||+|||+..+++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~ 46 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDG 46 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeC
Confidence 46899999999999999975
No 212
>PRK12408 glucokinase; Provisional
Probab=50.51 E-value=50 Score=33.65 Aligned_cols=46 Identities=22% Similarity=0.091 Sum_probs=30.3
Q ss_pred ccE-EEEecCcccc--HHHHHH--HH---------hhc-CCceeecCCCCccHHHHHHHHH
Q 009868 423 EFL-LRVDGGATVN--NLLMQI--QA---------DLL-GSPVIRPADIETTALGAAFAAG 468 (523)
Q Consensus 423 ~~~-i~~~GG~a~s--~~~~qi--~A---------dvl-g~pv~~~~~~e~~alGaA~lA~ 468 (523)
++. |++.||.+.+ +.+..- +. ..+ ..||......+++.+|||.++.
T Consensus 272 Pe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~~ 332 (336)
T PRK12408 272 ARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWYL 332 (336)
T ss_pred CCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHHH
Confidence 577 9999999853 444331 11 122 5678887766889999986554
No 213
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=49.48 E-value=31 Score=32.33 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.4
Q ss_pred EEEEecCCCCceEEEEcCCC
Q 009868 9 IGAIDQGTTSTRFIIYDHQA 28 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g 28 (523)
+|.||+|-|++|.+++|.+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 46799999999999998664
No 214
>PLN02405 hexokinase
Probab=48.92 E-value=62 Score=34.89 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=33.3
Q ss_pred EEEEecCcc-ccHHHHHH----HHhhcC----CceeecCCCCccHHHHHHHHHHhc
Q 009868 425 LLRVDGGAT-VNNLLMQI----QADLLG----SPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 425 ~i~~~GG~a-~s~~~~qi----~Advlg----~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
.|-+.|+.- +.|.+.+. +-++++ .+|......+++.+|||++|+.+.
T Consensus 435 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 435 VIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGIGAALLAASHS 490 (497)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecCchHHHHHHHHHHHh
Confidence 466778876 45555444 444554 347776678899999999999874
No 215
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=48.84 E-value=13 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.4
Q ss_pred EEEEecCCCCceEEEEcCCCC
Q 009868 9 IGAIDQGTTSTRFIIYDHQAR 29 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~ 29 (523)
++|||+|||++++++++. |+
T Consensus 2 viGIDlGtt~s~va~~~~-g~ 21 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG-GE 21 (595)
T ss_pred EEEEEeCcccEEEEEEEC-CE
Confidence 789999999999999974 43
No 216
>PRK07058 acetate kinase; Provisional
Probab=48.74 E-value=25 Score=36.49 Aligned_cols=31 Identities=13% Similarity=0.408 Sum_probs=24.6
Q ss_pred CCceEEEEecCCCCceEEEEcCCC---CEEEEEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQA---RPIGSHQ 35 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g---~i~~~~~ 35 (523)
+++++|.|..|+||+|..|||.+. +++....
T Consensus 2 ~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~ 35 (396)
T PRK07058 2 SKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGD 35 (396)
T ss_pred CCCEEEEEECChHhheeEEEecCCCCceEEEEEE
Confidence 567999999999999999999643 4555543
No 217
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=48.55 E-value=60 Score=32.95 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=49.4
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccC-CCCeE-EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYP-EAGWV-EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~-~~g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
.+|||.-.--.+-+++++.++ +++.....+-..++ ..|.+ |.-...-.+.+..++++++++ ++++.++ |.+|+
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~e---A~~~~~d-ID~IA 76 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAE---AGVSLED-IDAIA 76 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCccc-CCEEE
Confidence 478888666667778888766 66543332221122 23433 333445567778888888877 7888889 99999
Q ss_pred Ecc
Q 009868 86 LTN 88 (523)
Q Consensus 86 is~ 88 (523)
++.
T Consensus 77 ~T~ 79 (342)
T COG0533 77 VTA 79 (342)
T ss_pred Eec
Confidence 976
No 218
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=48.22 E-value=28 Score=29.45 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=32.1
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 49 EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 49 e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+.+++++++++.+.+.+++++ +++++++ |.+|-||.+
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~---N~l~~ed-ivSv~FT~T 48 (117)
T cd02185 12 ENTAEEILEATRELLEEIIER---NNIKPED-IISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHH-EEEEEEEeC
Confidence 346899999999999999987 7899999 999988874
No 219
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=48.10 E-value=43 Score=37.65 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=42.2
Q ss_pred CceEEEEecCCC-CceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 6 EVFIGAIDQGTT-STRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 6 ~~~~lgIDiGtt-~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.+.++|+|-|.- ++|.+++|.+|+.+....+ +|.+ |..-++.....++.++.+ .++ + +.+|
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I-----yp~~------p~~~~~~~~~~l~~l~~~---~~V---e-~iaI 390 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDDTGKLLDTATI-----YPHP------PVNQSDKAEATLKDLIRK---YKV---E-LIAI 390 (780)
T ss_pred CcceeecCCccccccEEEEEcCCCceeceeEE-----EcCC------CccchHHHHHHHHHHHHH---hCc---e-EEEE
Confidence 447899999974 4999999999999875433 3322 212244555566666654 343 3 6678
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
|.++
T Consensus 391 GngT 394 (780)
T COG2183 391 GNGT 394 (780)
T ss_pred ecCC
Confidence 7766
No 220
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=47.75 E-value=28 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=32.1
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 49 EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 49 e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+.+.+++++++.+.+.+++++ +++++++ |.+|-||.+
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~---N~l~~ed-ivSv~FT~T 48 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMER---NELTPED-LISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHH-EEEEEEEec
Confidence 346899999999999999987 7899999 999988874
No 221
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=47.46 E-value=12 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.3
Q ss_pred EEEEecCCCCceEEEEcC
Q 009868 9 IGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~ 26 (523)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999874
No 222
>PRK13322 pantothenate kinase; Reviewed
Probab=46.85 E-value=14 Score=35.81 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|...++-|.+..+...++.+++..+.+ -.|+++||.++ +++..+.. +.+ .++-...
T Consensus 175 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~---------~~vilTGG~a~------~l~~~l~~-~~~--~~~LvL~ 236 (246)
T PRK13322 175 RNTVDAVERGCLLMLRGFIESQLEQARELWGPD---------FEIFLTGGDAP------LLADHLPQ-ARV--VPDLVFV 236 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCHH------HHHhhCCC-CEE--CCCcHHH
Confidence 468888999999999999999999887754433 46999999763 34445555 333 3556777
Q ss_pred HHHHHHH
Q 009868 462 GAAFAAG 468 (523)
Q Consensus 462 GaA~lA~ 468 (523)
|-..++.
T Consensus 237 GL~~~~~ 243 (246)
T PRK13322 237 GLAQYCP 243 (246)
T ss_pred HHHHHHh
Confidence 7766553
No 223
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=46.75 E-value=13 Score=36.97 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.2
Q ss_pred EEEEecCCCCceEEEEcCCCCEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPI 31 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~ 31 (523)
++|||=|||.+|.++.+.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 47999999999999999888654
No 224
>PLN02914 hexokinase
Probab=45.64 E-value=78 Score=34.08 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.4
Q ss_pred cEEEEecCcc-ccHHHHHHHH----hhcC----CceeecCCCCccHHHHHHHHHHhc
Q 009868 424 FLLRVDGGAT-VNNLLMQIQA----DLLG----SPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 424 ~~i~~~GG~a-~s~~~~qi~A----dvlg----~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
-.|-+.|+.- +.|.+.+.+. .++| .+|.+....+++.+|||++||.+.
T Consensus 432 ~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 432 TVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred EEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhh
Confidence 3566778876 4555555544 4443 356776778899999999999864
No 225
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=45.18 E-value=17 Score=40.38 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=17.6
Q ss_pred ceEEEEecCCCCceEEEEcC
Q 009868 7 VFIGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~ 26 (523)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 47899999999999999853
No 226
>PRK13327 pantothenate kinase; Reviewed
Probab=44.94 E-value=1.4e+02 Score=28.97 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
.+|..-|...++-+.+..+...++.+++..+.+ -+|+++||.++ .+++.+.. ... .++-...
T Consensus 169 ~~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~---------~~vilTGG~A~------~l~~~l~~-~~~--~p~LvL~ 230 (242)
T PRK13327 169 NDTDDALTSGCDGAAVALIERSLQHAHRSLGQP---------VRLLVHGGGAP------PLLPLLPD-AEF--RPALVLD 230 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCHH------HHHHhCCC-CEE--ccCcHHH
Confidence 468888999999999999888888887654433 36999999863 34444432 333 4567788
Q ss_pred HHHHHHHHhc
Q 009868 462 GAAFAAGLAI 471 (523)
Q Consensus 462 GaA~lA~~~~ 471 (523)
|-+.+|..+.
T Consensus 231 GL~~~a~~~~ 240 (242)
T PRK13327 231 GLATWATAAA 240 (242)
T ss_pred HHHHHHHhcc
Confidence 9888887654
No 227
>PRK00976 hypothetical protein; Provisional
Probab=44.29 E-value=24 Score=35.62 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=17.3
Q ss_pred eEEEEecCCCCceEEEEcCC
Q 009868 8 FIGAIDQGTTSTRFIIYDHQ 27 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~ 27 (523)
+++|||=|||.+|.++.+.+
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~ 21 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGG 21 (326)
T ss_pred eEEeecCCCccEEEEEEcCC
Confidence 58999999999999999433
No 228
>PRK09698 D-allose kinase; Provisional
Probab=43.76 E-value=1.1e+02 Score=30.19 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccH-H----HHHHHHhhcC-------CceeecC
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNN-L----LMQIQADLLG-------SPVIRPA 454 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~-~----~~qi~Advlg-------~pv~~~~ 454 (523)
++++...+.++..+..++..+ . ++.|++.|+.++.. . +.+.+.+.+- .++.+..
T Consensus 215 ~~~~~~~~~la~~l~~li~~l------d--------P~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 280 (302)
T PRK09698 215 PFIQSLLENLARAIATSINLF------D--------PDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYAS 280 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------C--------CCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECC
Confidence 355555666666666554333 4 68899988887643 2 2233333221 2344444
Q ss_pred -CCCccHHHHHHHHH
Q 009868 455 -DIETTALGAAFAAG 468 (523)
Q Consensus 455 -~~e~~alGaA~lA~ 468 (523)
..+++++|||.++.
T Consensus 281 ~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 281 SSDFNGAQGAAILAH 295 (302)
T ss_pred cCCcccHHhHHHHHH
Confidence 45677899998865
No 229
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=43.76 E-value=69 Score=28.03 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.3
Q ss_pred eEEEEecCCCCceEEEEcCCCCE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARP 30 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i 30 (523)
.+||||.|+-.+=+++-|..+.+
T Consensus 5 ~iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred cEEEEEeCCCEEEEEEecCCCCE
Confidence 48999999999999999987755
No 230
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=42.82 E-value=38 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.5
Q ss_pred eEEEEecCCCCceEEEEcCCCCE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARP 30 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i 30 (523)
.+||||.|+..+=+++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 57999999999999999988764
No 231
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=42.59 E-value=20 Score=40.22 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.9
Q ss_pred eEEEEecCCCCceEEEEcC
Q 009868 8 FIGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~ 26 (523)
.++|||+|||+.++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 4899999999999999863
No 232
>PRK13326 pantothenate kinase; Reviewed
Probab=41.87 E-value=1.3e+02 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeee
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEF 38 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~ 38 (523)
...|.||+|-|++|.++||. ++++...+.++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~-~~l~~~~r~~t 36 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD-NKMQIFCKLKT 36 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC-CEEEEEEEecc
Confidence 35788999999999999994 56665444444
No 233
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=41.70 E-value=78 Score=33.29 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=41.5
Q ss_pred eEEEEecCCCCceEEEEcC--CCC--EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 009868 8 FIGAIDQGTTSTRFIIYDH--QAR--PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVD 78 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~--~g~--i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 78 (523)
++.|+||||+.+++++--. +|+ ++...+.+.. -=..| .-.|.+...+++.+++.++-.. +|+...
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~Sr--Gik~G-~I~di~~~~~sI~~av~~AE~m---ag~~i~ 75 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSR--GIKKG-VIVDLDAAAQSIKKAVEAAERM---AGCEIK 75 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCc--ccccc-eEEcHHHHHHHHHHHHHHHHHh---cCCCcc
Confidence 8999999999999998774 342 2222121111 11234 4568888888888888777655 566543
No 234
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=41.49 E-value=76 Score=35.48 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=36.0
Q ss_pred ccEEEEecCcccc--HHHH-----H-------HHHhhcCCceeecCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVN--NLLM-----Q-------IQADLLGSPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s--~~~~-----q-------i~Advlg~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
++.|++.||.+.. +.+. + +..-+-+.||.++...+.+.+|||..+...+.
T Consensus 270 p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~ 333 (638)
T PRK14101 270 LGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVSAILAEQLS 333 (638)
T ss_pred CCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHHHHHHHhc
Confidence 4788888998743 3332 2 12223479999999999999999888887764
No 235
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=41.14 E-value=19 Score=36.47 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.7
Q ss_pred EEEecCCCCceEEEEcCCCCEE
Q 009868 10 GAIDQGTTSTRFIIYDHQARPI 31 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~ 31 (523)
+|||+||+++++... .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999998774 456554
No 236
>PLN03184 chloroplast Hsp70; Provisional
Probab=40.99 E-value=22 Score=39.97 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=17.1
Q ss_pred eEEEEecCCCCceEEEEcC
Q 009868 8 FIGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~ 26 (523)
.++|||+|||+.++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 4899999999999999964
No 237
>PRK00292 glk glucokinase; Provisional
Probab=40.40 E-value=71 Score=32.05 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=29.3
Q ss_pred cc-EEEEecCccc-c-HHHHH-----H------HHhh-cCCceeecCCCCccHHHHHHHHH
Q 009868 423 EF-LLRVDGGATV-N-NLLMQ-----I------QADL-LGSPVIRPADIETTALGAAFAAG 468 (523)
Q Consensus 423 ~~-~i~~~GG~a~-s-~~~~q-----i------~Adv-lg~pv~~~~~~e~~alGaA~lA~ 468 (523)
++ .|++.||.+. + +.+.. . ..+. -..|+......++..+|||.++.
T Consensus 254 P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 254 ARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred CCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 56 7899998873 2 32222 1 1223 25677666667899999998764
No 238
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=39.06 E-value=28 Score=38.54 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=18.1
Q ss_pred ceEEEEecCCCCceEEEEcCCCC
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQAR 29 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~ 29 (523)
..++|||+|||+..++++. +|+
T Consensus 19 ~~viGIDlGTT~S~va~~~-~~~ 40 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT-NRK 40 (595)
T ss_pred ceEEEEEcCcccEEEEEEe-CCe
Confidence 3689999999999999885 443
No 239
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=38.61 E-value=1e+02 Score=31.58 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=32.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceeecCC-CCccHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD-IETTALGAAFAAG 468 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~-~e~~alGaA~lA~ 468 (523)
+++|+++||||+ ++.+.+.+.++.- .+++. .-+-|+|...++.
T Consensus 292 ~d~IiL~GGGA~--ll~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGAN--IFFDSLSHWYSDV-EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHH--HHHHHHHHHcCCe-EEcCChHHHHHHHHHHHHH
Confidence 889999999985 4778888888864 45454 4466888877775
No 240
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=37.75 E-value=47 Score=34.69 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEEEEecCCCCceEEEEcCC--CCEEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQ--ARPIGSH 34 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~--g~i~~~~ 34 (523)
.+|.|..|+||+|..|||.+ .+++...
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G 33 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSG 33 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEE
Confidence 48999999999999999963 4565544
No 241
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=37.62 E-value=51 Score=37.92 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceEEEEecCCCCceEEEEcCCCC
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQAR 29 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~ 29 (523)
.|+||+||||+|+=-+|+|.+.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 37899999999999999997653
No 242
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=37.12 E-value=63 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIG 32 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~ 32 (523)
.+++||+|+-|.-.++++.+++.+.
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEE
Confidence 5899999999999999998765543
No 243
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=37.08 E-value=22 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=16.2
Q ss_pred EEEEecCCCCceEEEEcC
Q 009868 9 IGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~ 26 (523)
++|||+|||+..+++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 479999999999999974
No 244
>PRK13328 pantothenate kinase; Reviewed
Probab=37.07 E-value=34 Score=33.45 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEEecCCCCceEEEEcCCCCEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIG 32 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~ 32 (523)
+|-||+|-|.+|..++|.+++++.
T Consensus 3 ~LliDiGNTriKwa~~~~~~~~~~ 26 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRPWVH 26 (255)
T ss_pred EEEEEeCccceeEEEEcCCCceee
Confidence 566999999999999997655553
No 245
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=36.97 E-value=90 Score=32.22 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.5
Q ss_pred eEEEEecCCCCceEEEEcCC-CCEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQ-ARPIGS 33 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~-g~i~~~ 33 (523)
.+|.|..|++|+|..|||.. ++++.+
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~ 28 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLAS 28 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhh
Confidence 47889999999999999964 666654
No 246
>PRK12397 propionate kinase; Reviewed
Probab=36.39 E-value=1.1e+02 Score=31.87 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=33.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhc
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLL 446 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advl 446 (523)
+-++|..+|.++..+-.+....| . ++-|+++||... |+..++.+.+-|
T Consensus 298 ~lA~d~f~yri~k~IGa~~a~lg-g--------vDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 298 KLALTLFAERIRATIGSYIMQMG-G--------LDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCchhhCCHHHHHHHHhhh
Confidence 34788888888888877754333 2 899999999995 555555555443
No 247
>PRK13321 pantothenate kinase; Reviewed
Probab=36.23 E-value=1.9e+02 Score=28.09 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=43.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
+|+||+|.|++|.++||.+ +++...+.+++ ...+++++.+.+.+.+++. +.++++ |.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~--------~~~~~~~~~~~l~~l~~~~-------~~~~~~-i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD--------KSRTSDELGILLLSLFRHA-------GLDPED-IRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC--------CCCCHHHHHHHHHHHHHHc-------CCChhh-CCeEEEEe
Confidence 6889999999999999944 77766666554 2345566665555544332 334457 89999987
No 248
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=36.11 E-value=40 Score=34.72 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=45.1
Q ss_pred ceEEEEecCCC--CceEEEEcCCCC-----EEEEEEeeeeeccC------CCCeEEeCHHHH-------HHHHHHHHHHH
Q 009868 7 VFIGAIDQGTT--STRFIIYDHQAR-----PIGSHQVEFTQFYP------EAGWVEHEPMEI-------LESVRVCMAKA 66 (523)
Q Consensus 7 ~~~lgIDiGtt--~~K~~l~d~~g~-----i~~~~~~~~~~~~~------~~g~~e~d~~~~-------~~~~~~~l~~~ 66 (523)
.++||+=.||| ++-+++++.+|. ++...+.+|+.... .... .-+++++ =+...++++++
T Consensus 2 ~~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~-~~~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 2 MRYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAALLALLQGG-ADELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred CeEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788988888 677888886652 34445666653211 0111 0112222 23334555566
Q ss_pred HHHHhhCCCCcccCceEEEEccc
Q 009868 67 LDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 67 ~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+++ +++++.+ |.+||..+|
T Consensus 81 ~~~---~~l~~~~-id~IgsHGQ 99 (365)
T PRK09585 81 LAE---AGLSPED-IDAIGSHGQ 99 (365)
T ss_pred HHH---cCCCccC-ccEEEeCCc
Confidence 555 6788888 999977665
No 249
>PRK13331 pantothenate kinase; Reviewed
Probab=36.03 E-value=1.7e+02 Score=28.50 Aligned_cols=58 Identities=7% Similarity=-0.001 Sum_probs=36.1
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
..+|.||+|-|++|.++||. .+++...+ +. .....+ ++.++.. .++++++ |..+.+
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~-~~~~~~~r--t~--------~~~t~d---------~~~~l~~---~~~~~~~-i~~~ii 62 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSG-ETLVKTWD--TP--------HLDESI---------IQLLLPG---QTLLIVA-PNPLVI 62 (251)
T ss_pred CcEEEEEeCCCcEEEEEEEC-CEEEEEEE--cC--------CcchHH---------HHHHHHH---cCCCccc-cCEEEE
Confidence 34788999999999999994 35554322 22 011111 4445544 4566667 888877
Q ss_pred cc
Q 009868 87 TN 88 (523)
Q Consensus 87 s~ 88 (523)
|+
T Consensus 63 sS 64 (251)
T PRK13331 63 AS 64 (251)
T ss_pred Ee
Confidence 77
No 250
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=35.47 E-value=23 Score=36.00 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.8
Q ss_pred EEEecCCCCceEEEEcCCCCEEE
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIG 32 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~ 32 (523)
+|||+||+++++... .+|.++.
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~ 27 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLN 27 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEc
Confidence 799999999999775 5666654
No 251
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=33.79 E-value=50 Score=32.39 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=33.1
Q ss_pred EEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHH
Q 009868 10 GAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRV 61 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~ 61 (523)
+|||-||.++-+.-||. .|+++....++... ++.+|.-+.+-+.+
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde-------Vtk~p~iiv~ii~e 46 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE-------VTKSPRIIVDIIEE 46 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH-------hccCchHHHHHHHH
Confidence 48999999999988885 79999877766652 56777765544433
No 252
>PTZ00288 glucokinase 1; Provisional
Probab=33.56 E-value=2.1e+02 Score=30.00 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=32.7
Q ss_pred ccEEEEecCcc-ccHHHHH------HH-----------Hhhc-CCceee-cCCCCccHHHHHHHHHHhc
Q 009868 423 EFLLRVDGGAT-VNNLLMQ------IQ-----------ADLL-GSPVIR-PADIETTALGAAFAAGLAI 471 (523)
Q Consensus 423 ~~~i~~~GG~a-~s~~~~q------i~-----------Advl-g~pv~~-~~~~e~~alGaA~lA~~~~ 471 (523)
++.|++.||++ ++..+.+ .+ .+.+ ..||++ ....+.+.+|||..|...+
T Consensus 324 P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 324 PLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred CCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHhh
Confidence 56688888665 4433322 11 3333 479988 7788899999999887643
No 253
>PLN02596 hexokinase-like
Probab=33.32 E-value=1.8e+02 Score=31.28 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=33.2
Q ss_pred EEEEecCcc-ccHHH----HHHHHhhcC----CceeecCCCCccHHHHHHHHHHhcc
Q 009868 425 LLRVDGGAT-VNNLL----MQIQADLLG----SPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 425 ~i~~~GG~a-~s~~~----~qi~Advlg----~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
.|-+.|+.- +.|.+ .+.+.+++| .+|.+....+++.+|||++|+....
T Consensus 430 ~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 430 VVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHGGSGAGALFLAACQTG 486 (490)
T ss_pred EEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEccCchhHHHHHHHHhhcc
Confidence 566778876 45444 444555564 2566655778999999999998653
No 254
>PRK13322 pantothenate kinase; Reviewed
Probab=32.67 E-value=2.3e+02 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.2
Q ss_pred EEEEecCCCCceEEEEcCCCCEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPI 31 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~ 31 (523)
.|.||+|-|++|..++|.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~~~~~~ 24 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDNGGQII 24 (246)
T ss_pred EEEEEeCCCcEEEEEEcCCCchh
Confidence 57799999999999999645554
No 255
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=32.53 E-value=1.8e+02 Score=29.36 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=26.1
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC---ceeecCCCCc-cHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS---PVIRPADIET-TALG 462 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~---pv~~~~~~e~-~alG 462 (523)
+++|+++|||| .++...+.+.++. .+.+++.++- -+.|
T Consensus 273 ~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 273 IDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRG 314 (318)
T ss_dssp -SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHH
T ss_pred CCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHH
Confidence 78999999998 5788888888874 6777776663 3444
No 256
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=32.51 E-value=18 Score=37.22 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=33.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC--c------eee--cC-CCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS--P------VIR--PA-DIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~--p------v~~--~~-~~e~~alGaA~lA~~ 469 (523)
.++|+++||+|+-+-+.+.+.+-++. | +.+ .. ...++-+|++++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 57899999999988888888887762 1 222 22 344556799998865
No 257
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=32.12 E-value=1.8e+02 Score=29.04 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc-HHHHHHHHhhcCCceeecCCCCccHHHHHHHH
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN-NLLMQIQADLLGSPVIRPADIETTALGAAFAA 467 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA 467 (523)
..-+++-.+..+...++.+... .. ..++.+.||.+++ +.|..+.-.-+..|. ......||.++|
T Consensus 225 A~~Il~~aa~~i~~~~~~l~~~--~g--------~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A 289 (301)
T COG2971 225 AIRILKEAAAYIATLLEALSIF--NG--------SEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLA 289 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--cC--------CceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHH
Confidence 3345666667777777777422 22 5789999999976 788777666665555 234677888888
Q ss_pred HHhcc
Q 009868 468 GLAIG 472 (523)
Q Consensus 468 ~~~~G 472 (523)
....+
T Consensus 290 ~~~~~ 294 (301)
T COG2971 290 LGRFG 294 (301)
T ss_pred HHhhh
Confidence 76554
No 258
>PLN02666 5-oxoprolinase
Probab=32.08 E-value=1.7e+02 Score=35.56 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=52.7
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHH-HHHHHHHHHHHHHHH-H-hhCCCCcccCc
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPME-ILESVRVCMAKALDK-A-TADGHNVDSGL 81 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~-~~~~~~~~l~~~~~~-~-~~~~~~~~~~I 81 (523)
+.+|.+|||+|+|-+-++++|.++.-+...+.++. .| .|+.+ +.+.+.++++.++.. + ...++++++ |
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~-i 77 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV--DP------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTER-I 77 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHHHHhcCCcccccCCChHH-c
Confidence 45789999999999999999986653434444431 11 23432 444444444433210 0 113555667 8
Q ss_pred eEEEEccccceeEEeeCCCCcc
Q 009868 82 KAIGLTNQRETTVLWSKSTGCP 103 (523)
Q Consensus 82 ~aIgis~~~~~~v~~d~~~g~~ 103 (523)
..|..+++..+--++.. +|..
T Consensus 78 ~~v~hGTT~atNAller-kGa~ 98 (1275)
T PLN02666 78 EWIRMGTTVATNALLER-KGER 98 (1275)
T ss_pred cEEEEechHHHHHHHhc-cCCc
Confidence 88888887766666655 4543
No 259
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=31.92 E-value=2.2e+02 Score=25.51 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=33.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
+||||=|+..+=.++++.+++.+. -..+..+.... ++..+=+..+.+.+.+++++
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~--~v~~G~I~t~~----~~~~~RL~~I~~~l~~~i~~ 55 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLS--YLGSGCIRTKV----DDLPSRLKLIYAGVTEIITQ 55 (156)
T ss_pred CEeECcccccccEEEEEecCCeEE--EEEeeEEECCC----CCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999997665332 12222222111 23334455667777777765
No 260
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=31.67 E-value=86 Score=31.90 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=47.7
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEE-eeeeeccCCCCeEEeCHHH-HHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQ-VEFTQFYPEAGWVEHEPME-ILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~-~~~~~~~~~~g~~e~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|||.-.---+-++++|+.++++++.. ..+...+...|-..--.+. --+.+..++++++.. ++..+.+ +.+|+|
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~d-ldaIAV 109 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKD-LDAIAV 109 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCccc-ceeEEE
Confidence 888886666788899999999887632 1111122233432222222 233455666777765 6788899 999999
Q ss_pred cc
Q 009868 87 TN 88 (523)
Q Consensus 87 s~ 88 (523)
+.
T Consensus 110 T~ 111 (405)
T KOG2707|consen 110 TR 111 (405)
T ss_pred ec
Confidence 76
No 261
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=31.65 E-value=2.4e+02 Score=28.50 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEecCCCCceEEEEcCCCCE
Q 009868 10 GAIDQGTTSTRFIIYDHQARP 30 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i 30 (523)
|.-|||+||+|.++++.++..
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~ 21 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGP 21 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG
T ss_pred CeEEeCcccEEEEEEEcCCCC
Confidence 467999999999999986544
No 262
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=31.30 E-value=82 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.6
Q ss_pred ceEEEEecCCCCceEEEEcCCC
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA 28 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g 28 (523)
+.+||+|+||-.|=+++-|..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999999998776
No 263
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=31.01 E-value=1.8e+02 Score=28.96 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEec-Cccc-cHHHHHHHHhhcC---------CceeecC-C
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDG-GATV-NNLLMQIQADLLG---------SPVIRPA-D 455 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~G-G~a~-s~~~~qi~Advlg---------~pv~~~~-~ 455 (523)
.++.+++-.+..+...+-.+... .. ++.|++.| |.+. .+.+.+.+...+. .++.... .
T Consensus 223 ~a~~~~~~~~~~la~~ianl~~~--~~--------P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 292 (314)
T COG1940 223 LAKEVIERAADYLARGLANLINL--LD--------PEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALG 292 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cC--------CCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcc
Confidence 34455666666666665555432 34 67888888 6664 3666666654322 1222222 1
Q ss_pred -CCccHHHHHHHHHH
Q 009868 456 -IETTALGAAFAAGL 469 (523)
Q Consensus 456 -~e~~alGaA~lA~~ 469 (523)
.+++.+|||+++..
T Consensus 293 ~~~a~~~ga~~~~~~ 307 (314)
T COG1940 293 GNDAGLIGAALLALL 307 (314)
T ss_pred cccccchhHHHHHHH
Confidence 45677888887754
No 264
>PRK07157 acetate kinase; Provisional
Probab=31.01 E-value=67 Score=33.48 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.8
Q ss_pred EEEEecCCCCceEEEEcC-CCCEEEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDH-QARPIGSHQ 35 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~-~g~i~~~~~ 35 (523)
+|.|..|+||+|..|||. +.+++....
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGL 32 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEE
Confidence 899999999999999996 345665543
No 265
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=1.3e+02 Score=30.63 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhhhhhHHHH----HHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCC
Q 009868 384 SKAHIARAVLESMCFQVKD----VLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADI 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~----~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~ 456 (523)
..+++...+.+.++..+.. .++.+. +.... ++.++++||.|+|+.+...+.++. |.....+..
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~-l~~~~--------~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~- 341 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLL-LQPKN--------VKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPP- 341 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccC--------CceEEEcCCccchHHHHHHHHHHHHhhCCccccCCh-
Confidence 5677777777776655433 333322 11333 678999999999999988887765 444333322
Q ss_pred CccHHHHHHHHHHhcccc
Q 009868 457 ETTALGAAFAAGLAIGVF 474 (523)
Q Consensus 457 e~~alGaA~lA~~~~G~~ 474 (523)
.-..=-++|+|-.|+-.+
T Consensus 342 ~lCsDNgiMIaw~Gie~l 359 (405)
T KOG2707|consen 342 SLCSDNGIMIAWTGIEML 359 (405)
T ss_pred hhcCCcchhhhhHHHHHH
Confidence 111222346666655433
No 266
>PRK13320 pantothenate kinase; Reviewed
Probab=30.41 E-value=2.6e+02 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
++|.||+|-|++|.++++ +++++..
T Consensus 3 M~L~iDiGNT~ik~~~~~-~~~~~~~ 27 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFE-GDELLEV 27 (244)
T ss_pred eEEEEEeCCCcEEEEEEE-CCEEEEE
Confidence 478899999999999998 4555543
No 267
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=53 Score=36.16 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=23.8
Q ss_pred CcccCCceEEEEecCCCCceEEEEcC-CCCEEE
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDH-QARPIG 32 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~-~g~i~~ 32 (523)
|..++....+|||+|||...+.++.. ...+++
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iia 33 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIA 33 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeee
Confidence 45566667899999999999999862 334443
No 268
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=29.89 E-value=1.8e+02 Score=29.17 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=29.3
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC-ceeecCCCC-ccHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS-PVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~~e-~~alGaA~l 466 (523)
++.|+++||||. ++.+.+.+.+.. .+.+++.++ +-|.|-..+
T Consensus 274 ~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 274 IQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred ccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 889999999985 677778888875 344555544 667765443
No 269
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=29.48 E-value=1.3e+02 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=31.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRV 61 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~ 61 (523)
+++||+|.+.+-++++ .+++|.+.-..-+. ..+++.+++-+.+
T Consensus 169 ~~~vniGN~HTlaa~v-~~~rI~GvfEHHT~---------~l~~~kL~~~l~~ 211 (254)
T PF08735_consen 169 IIVVNIGNGHTLAALV-KDGRIYGVFEHHTG---------MLTPEKLEEYLER 211 (254)
T ss_pred eEEEEeCCccEEEEEE-eCCEEEEEEecccC---------CCCHHHHHHHHHH
Confidence 6779999999999999 68888876544443 4577776655443
No 270
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=29.11 E-value=1.5e+02 Score=31.98 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=25.8
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeec
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQF 41 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~ 41 (523)
.+.||||+.|+-.++++ +++++...+.|....
T Consensus 134 ~lviDIGGGStEl~~~~-~~~~~~~~Sl~lG~v 165 (496)
T PRK11031 134 RLVVDIGGASTELVTGT-GAQATSLFSLSMGCV 165 (496)
T ss_pred EEEEEecCCeeeEEEec-CCceeeeeEEeccch
Confidence 56799999999999996 677887777777543
No 271
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=29.11 E-value=74 Score=33.19 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=22.6
Q ss_pred EEEEecCCCCceEEEEcCC-CCEEEEEEe
Q 009868 9 IGAIDQGTTSTRFIIYDHQ-ARPIGSHQV 36 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~-g~i~~~~~~ 36 (523)
+|.|..|+||+|..||+.+ .+++.+...
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~ 30 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLV 30 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechh
Confidence 6889999999999999974 667665443
No 272
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=28.89 E-value=1.7e+02 Score=30.17 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=43.3
Q ss_pred ceEEEEecCCC--CceEEEEcCCC---CEEEEEEeeeeecc-------CCCCeEEeCHHH-------HHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTT--STRFIIYDHQA---RPIGSHQVEFTQFY-------PEAGWVEHEPME-------ILESVRVCMAKAL 67 (523)
Q Consensus 7 ~~~lgIDiGtt--~~K~~l~d~~g---~i~~~~~~~~~~~~-------~~~g~~e~d~~~-------~~~~~~~~l~~~~ 67 (523)
+++||+=.||+ ++-+++++.++ +++...+.+|+... -.+.. .++++ +=+...+++++++
T Consensus 1 ~~~iGlMSGTSlDGiD~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~--~~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 1 QLVIGLMSGTSLDGIDAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPAA--SSLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp -EEEEEEE-TT-SEEEEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTTC--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccCCHHhhhheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998 78889998765 44555666766321 11111 11222 1223445555666
Q ss_pred HHHhhCCCCcccCceEEEEccccceeEE
Q 009868 68 DKATADGHNVDSGLKAIGLTNQRETTVL 95 (523)
Q Consensus 68 ~~~~~~~~~~~~~I~aIgis~~~~~~v~ 95 (523)
++ +++++++ |.+||..+| |+.-
T Consensus 79 ~~---~~i~~~~-I~~IgsHGQ--Tv~H 100 (364)
T PF03702_consen 79 KK---NGISPSD-IDLIGSHGQ--TVFH 100 (364)
T ss_dssp HH---CT--GGG-EEEEEE--E--EEEE
T ss_pred HH---cCCCccc-ccEEEeCCc--ceec
Confidence 55 7788889 999976654 4444
No 273
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=28.36 E-value=1.1e+02 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=22.0
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeee
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFT 39 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~ 39 (523)
|.||+|-|++|.++|+. ++++...+.++.
T Consensus 2 L~iDiGNT~i~~g~~~~-~~~~~~~r~~t~ 30 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-NKVYQFWRLATN 30 (243)
T ss_pred EEEEECCCcEEEEEEEC-CEEEEEEEecCC
Confidence 57999999999999984 566665555544
No 274
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.29 E-value=1.2e+02 Score=30.48 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=44.9
Q ss_pred CCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEE--EecCcc---ccHHH---H
Q 009868 368 WRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLR--VDGGAT---VNNLL---M 439 (523)
Q Consensus 368 ~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~--~~GG~a---~s~~~---~ 439 (523)
+|+...-.|+.+..+|+-++++-.. ++.-.+.+-+. -.+ ..+++. +.|||+ ++.+| +
T Consensus 142 yd~~~n~g~v~vg~s~dTa~Fav~~-------i~~WW~~~g~~-~yp-------~a~~lli~~D~GgsN~~r~r~wk~~L 206 (311)
T PF07592_consen 142 YDPAANEGWVSVGTSHDTADFAVDS-------IRRWWEEMGKA-RYP-------HAKRLLITADNGGSNGSRRRLWKKRL 206 (311)
T ss_pred EeccCCeEEEEEecCcccHHHHHHH-------HHHHHHHhChh-hcC-------chheEEEeccCCCCccchhHHHHHHH
Confidence 3555556677776677777775433 34444444221 111 145544 557776 46677 5
Q ss_pred HHHHhhcCCceeecCCCC
Q 009868 440 QIQADLLGSPVIRPADIE 457 (523)
Q Consensus 440 qi~Advlg~pv~~~~~~e 457 (523)
|-+||-+|++|.++-.+-
T Consensus 207 ~~la~~~gl~I~v~hyPP 224 (311)
T PF07592_consen 207 QELADETGLSIRVCHYPP 224 (311)
T ss_pred HHHHHHhCCEEEEEEcCC
Confidence 778999999999865443
No 275
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=28.19 E-value=44 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=14.0
Q ss_pred EEEEecCCCCceEEEEc-CCCC
Q 009868 9 IGAIDQGTTSTRFIIYD-HQAR 29 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d-~~g~ 29 (523)
.+|||+||+++++ ++ .+|.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~ 25 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI 25 (335)
T ss_pred eEEEEcccccEEE--EECCCcE
Confidence 4899999999974 44 3453
No 276
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=27.82 E-value=96 Score=29.49 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=27.8
Q ss_pred HHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHHHHHHHHhhcC
Q 009868 392 VLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNLLMQIQADLLG 447 (523)
Q Consensus 392 v~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~qi~Advlg 447 (523)
++--.-.++++++|.|++ -|.+ .+-++.+||. ..++.+-|+=||+..
T Consensus 164 lMTttm~~~~~viE~L~e-eGiR--------d~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 164 LMTTTMIGMKDVIELLKE-EGIR--------DKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCc--------cCeEEeecCccccHHHHHHhCCCccC
Confidence 333445668999999987 4877 3444444555 244555555555443
No 277
>PRK12397 propionate kinase; Reviewed
Probab=27.52 E-value=84 Score=32.83 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.9
Q ss_pred EEEEecCCCCceEEEEcC-CCCEEEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDH-QARPIGSHQ 35 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~-~g~i~~~~~ 35 (523)
+|.|..|+||+|..|||. +.+++....
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (404)
T PRK12397 5 IMAINAGSSSLKFQLLEMPQGDMLCQGL 32 (404)
T ss_pred EEEEECChHhheEEEEECCCCceEEEEE
Confidence 899999999999999995 445665543
No 278
>PRK13318 pantothenate kinase; Reviewed
Probab=26.94 E-value=3e+02 Score=26.61 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=43.1
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
+|+||+|.|++|.+++| +|+++...+.+++. ...++++.+ .++++++. .+.+..+ |.+|++|+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~~--------~~~~~~~~~----~l~~l~~~---~~~~~~~-i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTDS--------RRTADEYGV----WLKQLLGL---SGLDPED-ITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCCC--------CCCHHHHHH----HHHHHHHH---cCCCccc-CceEEEEE
Confidence 68899999999999999 68888776666541 223445443 34444444 3334457 88999987
No 279
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.93 E-value=32 Score=34.92 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=16.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
-+|||+||+++++..- .+|.++.+
T Consensus 3 ~igIDLGT~~t~i~~~-~~Giv~~e 26 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVK-GKGIVLNE 26 (326)
T ss_dssp EEEEEE-SSEEEEEET-TTEEEEEE
T ss_pred ceEEecCcccEEEEEC-CCCEEEec
Confidence 4799999999988543 36666654
No 280
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=26.53 E-value=1.4e+02 Score=25.04 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=19.7
Q ss_pred CCCCceEEEEcCCCCEEEEEEeee
Q 009868 15 GTTSTRFIIYDHQARPIGSHQVEF 38 (523)
Q Consensus 15 Gtt~~K~~l~d~~g~i~~~~~~~~ 38 (523)
..|++|+-|||.+|+++..++.-+
T Consensus 15 ~Pt~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECCCCCEEeeccccc
Confidence 457999999999999998765544
No 281
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=25.70 E-value=36 Score=26.45 Aligned_cols=20 Identities=50% Similarity=0.717 Sum_probs=17.3
Q ss_pred HHHHhhcCCCCCCCCCcccC
Q 009868 213 KPTLETLGIPAEILPKIVSN 232 (523)
Q Consensus 213 ~~ll~~~gi~~~~LP~i~~~ 232 (523)
+++|+.++|.+++||.|..+
T Consensus 27 ~~vLk~l~i~~~qLPkI~~~ 46 (80)
T COG2012 27 KEVLKELGIEPEQLPKIKAS 46 (80)
T ss_pred HHHHHHhCCCHHHCCccccc
Confidence 46999999999999998754
No 282
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=25.47 E-value=46 Score=33.65 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=13.9
Q ss_pred EEEecCCCCceEEEE
Q 009868 10 GAIDQGTTSTRFIIY 24 (523)
Q Consensus 10 lgIDiGtt~~K~~l~ 24 (523)
+|||+||+++|+...
T Consensus 11 vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 11 IGIDLGTANTLVYVK 25 (335)
T ss_pred eEEEcCCCcEEEEEC
Confidence 899999999999875
No 283
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=25.04 E-value=56 Score=33.04 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=12.9
Q ss_pred EEEEecCCCCceEEE
Q 009868 9 IGAIDQGTTSTRFII 23 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l 23 (523)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 479999999999854
No 284
>PLN02362 hexokinase
Probab=24.99 E-value=3.5e+02 Score=29.32 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=32.6
Q ss_pred EEEEecCcc-ccHHHHHHH----HhhcCC----ceeecCCCCccHHHHHHHHHHhcc
Q 009868 425 LLRVDGGAT-VNNLLMQIQ----ADLLGS----PVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 425 ~i~~~GG~a-~s~~~~qi~----Advlg~----pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
.|-+.||.- +.|.+.+.+ ..+++. .|......+++.+|||++|+.+..
T Consensus 444 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~ 500 (509)
T PLN02362 444 VVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSS 500 (509)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHh
Confidence 466778876 455554444 445532 456656788999999999998753
No 285
>PRK12379 propionate/acetate kinase; Provisional
Probab=24.68 E-value=1e+02 Score=32.07 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCceEEEEcCC-CCEEEEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQ-ARPIGSHQ 35 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~-g~i~~~~~ 35 (523)
..++|.|..|+||+|..|||.+ .+++....
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~ 34 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSGI 34 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEEE
Confidence 4689999999999999999963 45665544
No 286
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=24.28 E-value=60 Score=29.74 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=35.0
Q ss_pred EEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccc
Q 009868 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 426 i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
+.+.|||+|--....++.-+...-+.. +.--.++.||.+.|..+.|.
T Consensus 2 Lvl~GGG~rG~~~~Gvl~~L~e~~~~~-d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 2 LVFEGGGAKGIAYIGALKALEEAGILK-KRVAGTSAGAITAALLALGY 48 (194)
T ss_pred eEEcCchHHHHHHHHHHHHHHHcCCCc-ceEEEECHHHHHHHHHHcCC
Confidence 678999999888777777665443332 44457889999999999885
No 287
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=23.80 E-value=1e+02 Score=30.97 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.8
Q ss_pred EEEEecCcc-c-cHHHHH-----H-------HHhhcCCceeecCCCCccHHHHH
Q 009868 425 LLRVDGGAT-V-NNLLMQ-----I-------QADLLGSPVIRPADIETTALGAA 464 (523)
Q Consensus 425 ~i~~~GG~a-~-s~~~~q-----i-------~Advlg~pv~~~~~~e~~alGaA 464 (523)
-+++.||++ + .+.+.+ - ..-+-+.||++....+.+.+|||
T Consensus 263 gv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 263 GVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred cEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccCCC
Confidence 688888886 2 233333 1 22235789999888888888874
No 288
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=23.05 E-value=88 Score=31.47 Aligned_cols=45 Identities=13% Similarity=-0.050 Sum_probs=33.2
Q ss_pred HHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC
Q 009868 392 VLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG 447 (523)
Q Consensus 392 v~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg 447 (523)
+-|+|+.++..+=+.++... .+.|+++||-++-|-+.|.++.-+.
T Consensus 298 IpEAV~esl~~~Pe~~~p~l-----------~~NIv~iGGn~~fPgF~~RL~~Elr 342 (400)
T KOG0680|consen 298 IPEAVLESLSMLPEEVRPLL-----------LENIVCIGGNSNFPGFRQRLARELR 342 (400)
T ss_pred chHHHHHHHHhCHHHHHHHH-----------HhcEEEecCccCCcchHHHHHHHHH
Confidence 45555556666666666532 5789999999999999998887653
No 289
>PRK13329 pantothenate kinase; Reviewed
Probab=22.45 E-value=69 Score=31.15 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=16.0
Q ss_pred EEEEecCCCCceEEEEcC
Q 009868 9 IGAIDQGTTSTRFIIYDH 26 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~ 26 (523)
.|-||+|-|.+|..++|.
T Consensus 3 ~LliD~GNTriKw~~~~~ 20 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYDA 20 (249)
T ss_pred EEEEEcCcchheeeEecc
Confidence 566999999999999993
No 290
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=22.40 E-value=4.2e+02 Score=23.43 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=31.7
Q ss_pred eEEEEecCCCC-----ceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTS-----TRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~-----~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
-+|+||+.||+ +--++++ ++.++-..-...+ ...++-+=-+.+.+.|+.++++
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~~--------k~Ks~~ER~k~ias~Lk~ii~~ 60 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAKH--------KSKSFFERAKSIASELKTIIQK 60 (159)
T ss_pred eeEEEEEecccCCCCCceeEEec-CCeEEEeeeeecC--------cccCHHHHHHHHHHHHHHHHHH
Confidence 37899999998 7778887 4444322221222 1234544455666777777765
No 291
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=22.22 E-value=2e+02 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=18.1
Q ss_pred EEEecCCCCceEEEEcCCCCE
Q 009868 10 GAIDQGTTSTRFIIYDHQARP 30 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i 30 (523)
||||.|+..+=.++-|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 589999999999999887754
No 292
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=21.30 E-value=2e+02 Score=27.98 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.9
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeee
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFT 39 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~ 39 (523)
.|.||+|-|+++.++++ ++++....+.++.
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~~~~~r~~t~ 31 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKVVQTWRLATE 31 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeEEEEEeeccc
Confidence 57799999999999998 7777777776665
No 293
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.70 E-value=5.2e+02 Score=24.35 Aligned_cols=37 Identities=5% Similarity=0.061 Sum_probs=24.6
Q ss_pred ceEEEEecCCC-----CceEEEEcC--CCCEEEEEEeeeeeccC
Q 009868 7 VFIGAIDQGTT-----STRFIIYDH--QARPIGSHQVEFTQFYP 43 (523)
Q Consensus 7 ~~~lgIDiGtt-----~~K~~l~d~--~g~i~~~~~~~~~~~~~ 43 (523)
.++.|+|+.-. .+-++++-. +++++......++...|
T Consensus 26 ~~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~P 69 (208)
T cd06559 26 RLVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAVGEVTFP 69 (208)
T ss_pred cEEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEEEecCCC
Confidence 47899999643 333333333 79999888777776555
No 294
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.43 E-value=2e+02 Score=31.09 Aligned_cols=31 Identities=19% Similarity=-0.030 Sum_probs=23.0
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeee
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT 39 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~ 39 (523)
-.+.||||+.|+-.++.+ +.++....+.+..
T Consensus 130 ~~lv~DIGGGStEl~~g~-~~~~~~~~Sl~~G 160 (492)
T COG0248 130 DGLVIDIGGGSTELVLGD-NFEIGLLISLPLG 160 (492)
T ss_pred CEEEEEecCCeEEEEEec-CCccceeEEeecc
Confidence 357799999999999998 4445555565554
No 295
>PRK13324 pantothenate kinase; Reviewed
Probab=20.16 E-value=2e+02 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.290 Sum_probs=38.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
+|.||+|-|++|.+++| +++++...+.++.. .....+++.. .++.++.+ .+.+..+ |..|.+|+
T Consensus 2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~t~~-------~~~t~de~~~----~l~~~~~~---~~~~~~~-i~~viisS 65 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYATSS-------VDSTSDQMGV----FLRQALRE---NSVDLGK-IDGCGISS 65 (258)
T ss_pred EEEEEeCCCceEEEEEE-CCEEEEEEEEecCc-------cccchHHHHH----HHHHHHHh---cCCCccC-CCeEEEEe
Confidence 67899999999999999 34565544444310 1123344443 34444443 3444556 77787777
Done!