Query 009869
Match_columns 523
No_of_seqs 198 out of 1190
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 18:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 2.7E-34 5.9E-39 310.5 25.4 393 72-506 43-453 (472)
2 KOG1338 Uncharacterized conser 100.0 5.8E-31 1.3E-35 264.4 23.2 281 76-386 7-313 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 7.6E-18 1.6E-22 150.2 14.1 122 368-492 1-128 (128)
4 PF00856 SET: SET domain; Int 99.5 1.2E-13 2.7E-18 125.4 8.2 47 280-326 111-160 (162)
5 smart00317 SET SET (Su(var)3-9 97.2 0.00033 7.2E-09 60.1 4.2 44 283-326 69-115 (116)
6 KOG1085 Predicted methyltransf 89.6 0.29 6.3E-06 49.0 3.1 48 290-348 336-386 (392)
7 KOG4442 Clathrin coat binding 82.3 1.7 3.6E-05 48.7 4.6 42 290-331 196-240 (729)
8 KOG2589 Histone tail methylase 78.5 2.4 5.2E-05 44.2 4.0 42 282-326 192-235 (453)
9 KOG1079 Transcriptional repres 75.7 2.8 6.1E-05 46.8 3.8 39 290-328 668-709 (739)
10 smart00317 SET SET (Su(var)3-9 73.5 4 8.7E-05 34.4 3.6 27 111-137 12-38 (116)
11 KOG1080 Histone H3 (Lys4) meth 62.7 8 0.00017 46.0 4.1 40 289-328 941-983 (1005)
12 KOG1083 Putative transcription 44.5 28 0.0006 41.2 4.5 22 308-329 1274-1295(1306)
13 COG2940 Proteins containing SE 39.3 16 0.00034 40.2 1.5 37 290-326 408-447 (480)
14 KOG2461 Transcription factor B 33.3 40 0.00087 36.1 3.4 35 306-351 121-155 (396)
15 KOG3429 Predicted peptidyl-tRN 29.8 1.8E+02 0.0038 27.3 6.4 52 439-495 111-163 (172)
16 PF08666 SAF: SAF domain; Int 21.4 53 0.0011 24.7 1.3 14 112-125 3-16 (63)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=310.45 Aligned_cols=393 Identities=33% Similarity=0.412 Sum_probs=300.2
Q ss_pred ccchhcHHHHHHHHHHCCCCCCCcEEeecCCCCCCCCceeeEEEecCCCCCCeEEEcCccCccCcccccCCchHHHhhcc
Q 009869 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT 151 (523)
Q Consensus 72 ~~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~l~~~l~~ 151 (523)
....+....+..|.+.+|....+..+ .... ..+ +++.+..++..++.+..+|....++.......
T Consensus 43 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (472)
T KOG1337|consen 43 IASSENIKSLKFWLTGNGLSSSKSSL-PGND--IDE---WPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYN--------- 107 (472)
T ss_pred CCCccccccceeccccCCcchhhhcc-cccc--ccc---cchhhhhhhhhhhhhccCCchhhhccccccCc---------
Confidence 34557778888999999987654332 1111 112 35666777777777776666665555544321
Q ss_pred CCCChh-HHHHHHHHHHHhcCCCCCcHHHHHhcccccCCCccccCCccccCHhHHhhccCCchHHHHHHHHHHHHHHHHH
Q 009869 152 NKLSEL-ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE 230 (523)
Q Consensus 152 ~~~~~~-~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~~ 230 (523)
+.. ..++++|+.|...+..|.|++|+..||. .+++|++|..+++..|++++....+..+...++..+.+
T Consensus 108 ---~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (472)
T KOG1337|consen 108 ---DLLPIALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAE 177 (472)
T ss_pred ---cccHHHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHH
Confidence 111 6889999999998888999999999999 57999999999999999999999999999888887777
Q ss_pred HHHHHHhhhhhhhcCCCCCCCCCcChhHHHHHHhhhhcceeeeccc------cccccccccccCCCccCCCCCCceeEee
Q 009869 231 LDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKCKAMLAA 304 (523)
Q Consensus 231 l~~~~~~~~~l~~~~~~~~~~~~~t~~~f~wA~~~V~SRa~~~~~~------~~~~~~~LVPl~Dmlnhh~~~~~a~~~~ 304 (523)
+.+++......+.... .+.+++++|+||+++|.||+|+.... +-....+|+|++||+||....+.+.+..
T Consensus 178 ~~~~~~~~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~ 253 (472)
T KOG1337|consen 178 LLEVLQSHPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQ 253 (472)
T ss_pred HHHHHHhccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccC
Confidence 7765433322222222 23389999999999999999987432 2235679999999987644444677777
Q ss_pred eCCeEEEEEeccCCCCCeEEEecccccCCCccccCCCChHHHHHhcCcccCCCCCCeEEEEEecCCCCcChHHHHHHHHH
Q 009869 305 VDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQR 384 (523)
Q Consensus 305 ~~~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~~sN~eLLl~YGFv~~~Np~D~v~l~l~l~~~d~~~~~K~~lL~~ 384 (523)
.++.+.+++.++|++||||||+ ||+++|++||++||||.++||+|.|.+.+.+...|+.+..|.+.+..
T Consensus 254 ~d~~~~l~~~~~v~~geevfi~-----------YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~ 322 (472)
T KOG1337|consen 254 EDEAVELVAERDVSAGEEVFIN-----------YGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKK 322 (472)
T ss_pred CCCcEEEEEeeeecCCCeEEEe-----------cCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhh
Confidence 7789999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEcCCccchHhhhhHHHHhhc---CCChHHHHHHHHh-------cCCCCCCChhhHHHHHHHHHHH-HHH
Q 009869 385 NGKLSVQVFHVHAGREKEAISDMLPYLRLGY---VSDTSEMQSVISS-------LGPICPVSPCMERAVLDQLADY-FKA 453 (523)
Q Consensus 385 ~g~~~~~~f~l~~~~~~~~~~~Ll~~LRl~~---~s~~~el~~~~~~-------~~~~~~~s~~nE~~vl~~L~~~-l~~ 453 (523)
++......|.+...+++. .+++...++.. +..+.++...... ....++++..+|...+..+... +..
T Consensus 323 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 400 (472)
T KOG1337|consen 323 NGLPSSGEFSILLTGEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSL 400 (472)
T ss_pred cCCCCCceEEEeecCCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccc
Confidence 998888888887766542 33333333222 2112122222211 1134677888999999988888 778
Q ss_pred HHhcCCCChHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009869 454 RLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL 506 (523)
Q Consensus 454 ~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~eK~IL~~~l~~l~~~~~~l 506 (523)
.+..+.+++++|+..+.+..++.+..++..++..+|+||.+.+..+..+...+
T Consensus 401 ~~~~~~~~~~~~~~vl~~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l 453 (472)
T KOG1337|consen 401 TLRVFKALIDEDESVLKDNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLL 453 (472)
T ss_pred hhcccchhhhhhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence 88889999999999998888889999999999999999999999998444433
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=5.8e-31 Score=264.43 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=218.3
Q ss_pred hcHHHHHHHHHHCC-CCCC-CcEEeecCCCCC-CCCceeeEEEecCCCCCCeEEEcCccCccCcccccC-C--chHHHhh
Q 009869 76 EDLGDLKSWMHKNG-LPPC-KVILKEKPSHNE-KHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLG-N--ETIAELL 149 (523)
Q Consensus 76 ~~~~~l~~Wl~~~G-~~~~-~v~i~~~~~~~g-~Grg~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~-~--~~l~~~l 149 (523)
+..+.|+.|++..+ .+.+ +|.+.+.+..++ .| +|++|+++|++|+.+|.+|++.+++..+..- . |...+.+
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G---~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~ 83 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAG---AGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVL 83 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcc---cceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHH
Confidence 45789999999987 6665 888887765432 24 4899999999999999999999999876431 1 2222222
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCCCCcHHHHHhcccccCCCccccCCccccCHhHHhhccCCchHHHHHHHHHHHHHHHH
Q 009869 150 TTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYN 229 (523)
Q Consensus 150 ~~~~~~~~~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~ 229 (523)
- ++.+.|..|++.|++|...+.+|+|+||+..+|.+. .+++|+||+++|++.|..+.+.++..++...+.++|.
T Consensus 84 L-ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i 157 (466)
T KOG1338|consen 84 L-NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFI 157 (466)
T ss_pred h-hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHH
Confidence 2 578899999999999997666799999999999986 7999999999999976666666768889999999998
Q ss_pred HHHHHHHhhhhhhhcCCCCCCCCCcChhHHHHHHhhhhcceeeeccc-----------cccccccccccCCCccCCCCCC
Q 009869 230 ELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----------SLARRFALVPLGPPLLAYSSKC 298 (523)
Q Consensus 230 ~l~~~~~~~~~l~~~~~~~~~~~~~t~~~f~wA~~~V~SRa~~~~~~-----------~~~~~~~LVPl~Dmlnhh~~~~ 298 (523)
.+.. ++.+.||..+ ..+++|+|.++++++.+.+|.+.-. .-....+|+|.+||+||.+..|
T Consensus 158 ~~i~------pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~ 229 (466)
T KOG1338|consen 158 FVIQ------PFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKA 229 (466)
T ss_pred HHHH------HHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhc
Confidence 8765 3456677543 3489999999999999999976311 1123469999999999888889
Q ss_pred ceeEeeeCCeEEEEEeccCCCCCeEEEecccccCCCccccCCCChHHHHHhcCcccCCCCC-C--------eEEEEEecC
Q 009869 299 KAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPY-D--------RLVVEAALN 369 (523)
Q Consensus 299 ~a~~~~~~~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~~sN~eLLl~YGFv~~~Np~-D--------~v~l~l~l~ 369 (523)
++.+.++++++.|+|+|+|.+|+||+++ ||.++|+ |++||.+.-.-.| + -+.+-.+++
T Consensus 230 nanl~y~~NcL~mva~r~iekgdev~n~-----------dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~ 296 (466)
T KOG1338|consen 230 NANLRYEDNCLEMVADRNIEKGDEVDNS-----------DGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVP 296 (466)
T ss_pred ccceeccCcceeeeecCCCCCccccccc-----------cccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCC
Confidence 9999999999999999999999999999 9999999 8899988765332 1 122222445
Q ss_pred CCCcChHHHHHHHHHCC
Q 009869 370 TEDPQYQDKRMVAQRNG 386 (523)
Q Consensus 370 ~~d~~~~~K~~lL~~~g 386 (523)
.+++.+..|..+++.++
T Consensus 297 ~d~tm~~~R~il~ql~n 313 (466)
T KOG1338|consen 297 NDDTMRNMRLILLQLHN 313 (466)
T ss_pred CcchHHHHHHHHHHhcc
Confidence 55665666655444443
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.76 E-value=7.6e-18 Score=150.22 Aligned_cols=122 Identities=32% Similarity=0.483 Sum_probs=104.8
Q ss_pred cCCCCcChHHHHHHHHHCCCCceeEEEEEcCCccchHhhhhHHHHhhcCCChHHHHHHHHhcC------CCCCCChhhHH
Q 009869 368 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 441 (523)
Q Consensus 368 l~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~LRl~~~s~~~el~~~~~~~~------~~~~~s~~nE~ 441 (523)
++++||+++.|.++|+.+|+.....|.++.++. ++.+|++++||++|+ ++|+..+..... ...++|..||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 367899999999999999999888999998875 578999999999996 678777655432 23578999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 009869 442 AVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 492 (523)
Q Consensus 442 ~vl~~L~~~l~~~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~eK~IL 492 (523)
+++++|...|..+|+.|+||++||+++|++.....++++|++||++||+||
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999999887788999999999999997
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.46 E-value=1.2e-13 Score=125.42 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=37.3
Q ss_pred ccccccccCCCccCCC-CCCceeEe--eeCCeEEEEEeccCCCCCeEEEe
Q 009869 280 RRFALVPLGPPLLAYS-SKCKAMLA--AVDDAVQLVVDRPYKAGESIVVW 326 (523)
Q Consensus 280 ~~~~LVPl~Dmlnhh~-~~~~a~~~--~~~~~~~l~a~r~i~~GeEv~is 326 (523)
...+|+|++||+||++ ++|...+. ..++.+.++|.|+|++|||||++
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred cccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 4689999999998764 35555555 35899999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.24 E-value=0.00033 Score=60.10 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=33.9
Q ss_pred cccccCCCccCCC-CCCceeEeeeCC--eEEEEEeccCCCCCeEEEe
Q 009869 283 ALVPLGPPLLAYS-SKCKAMLAAVDD--AVQLVVDRPYKAGESIVVW 326 (523)
Q Consensus 283 ~LVPl~Dmlnhh~-~~~~a~~~~~~~--~~~l~a~r~i~~GeEv~is 326 (523)
.+.|+++++||.. ++|...+...++ .+.++|.|+|++||||+++
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~ 115 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTID 115 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeec
Confidence 4889999998753 444444444444 5999999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=89.61 E-value=0.29 Score=49.05 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=35.5
Q ss_pred CccCC-CCCCceeEeeeC--CeEEEEEeccCCCCCeEEEecccccCCCccccCCCChHHHHH
Q 009869 290 PLLAY-SSKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLI 348 (523)
Q Consensus 290 mlnhh-~~~~~a~~~~~~--~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~~sN~eLLl 348 (523)
++||. ..+|.+.+...+ ..+.+.|.|+|.+|||+... ||.++-+-++.
T Consensus 336 LINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYD-----------YGDRSkesi~~ 386 (392)
T KOG1085|consen 336 LINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYD-----------YGDRSKESIAK 386 (392)
T ss_pred hhcccccCcceeeEEEecCCceEEEEeccccccchhhhhh-----------ccccchhHHhh
Confidence 45553 356666555443 56899999999999999977 99988776654
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=1.7 Score=48.73 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=30.2
Q ss_pred CccCC-CCCCcee-Eee-eCCeEEEEEeccCCCCCeEEEeccccc
Q 009869 290 PLLAY-SSKCKAM-LAA-VDDAVQLVVDRPYKAGESIVVWYNISF 331 (523)
Q Consensus 290 mlnhh-~~~~~a~-~~~-~~~~~~l~a~r~i~~GeEv~isY~~~~ 331 (523)
++||. +++|.+. |.. +.-.+-+-+.+.|++||||+..||..+
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~r 240 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDR 240 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccc
Confidence 46765 4677654 432 234566779999999999999988765
No 8
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=78.52 E-value=2.4 Score=44.15 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=29.9
Q ss_pred ccccccCCCccCC-CCCCceeEeee-CCeEEEEEeccCCCCCeEEEe
Q 009869 282 FALVPLGPPLLAY-SSKCKAMLAAV-DDAVQLVVDRPYKAGESIVVW 326 (523)
Q Consensus 282 ~~LVPl~Dmlnhh-~~~~~a~~~~~-~~~~~l~a~r~i~~GeEv~is 326 (523)
..|=|-+ ++||. .++|+ |... .+...+++.|||++||||+--
T Consensus 192 LwLGPaa-fINHDCrpnCk--Fvs~g~~tacvkvlRDIePGeEITcF 235 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRPNCK--FVSTGRDTACVKVLRDIEPGEEITCF 235 (453)
T ss_pred heeccHH-hhcCCCCCCce--eecCCCceeeeehhhcCCCCceeEEe
Confidence 3455655 46654 24444 3333 478999999999999999999
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=75.71 E-value=2.8 Score=46.83 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=29.9
Q ss_pred CccCC-CCCCc--eeEeeeCCeEEEEEeccCCCCCeEEEecc
Q 009869 290 PLLAY-SSKCK--AMLAAVDDAVQLVVDRPYKAGESIVVWYN 328 (523)
Q Consensus 290 mlnhh-~~~~~--a~~~~~~~~~~l~a~r~i~~GeEv~isY~ 328 (523)
++||. .++|- ++....++.+-+.|.|.|.+|||+|..|.
T Consensus 668 FANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 668 FANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 35543 35564 45566778899999999999999999966
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=73.46 E-value=4 Score=34.36 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=22.7
Q ss_pred eeEEEecCCCCCCeEEEcCccCccCcc
Q 009869 111 HYVAASEDLQAGDAAFSVPNSLVVTLE 137 (523)
Q Consensus 111 ~Gl~At~dI~~ge~ll~IP~~~~it~~ 137 (523)
+||+|+++|++|+.|+..+-.++....
T Consensus 12 ~gl~a~~~i~~g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 12 WGVRATEDIPKGEFIGEYVGEIITSEE 38 (116)
T ss_pred EEEEECCccCCCCEEEEEEeEEECHHH
Confidence 489999999999999998887765543
No 11
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=62.70 E-value=8 Score=45.96 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCccCC-CCCCceeEeee--CCeEEEEEeccCCCCCeEEEecc
Q 009869 289 PPLLAY-SSKCKAMLAAV--DDAVQLVVDRPYKAGESIVVWYN 328 (523)
Q Consensus 289 Dmlnhh-~~~~~a~~~~~--~~~~~l~a~r~i~~GeEv~isY~ 328 (523)
-++||. .+||.|.+... ...+++.|.|+|.+||||+..|.
T Consensus 941 r~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 941 RFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred heeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 357765 47898776543 45699999999999999998844
No 12
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=44.50 E-value=28 Score=41.25 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.8
Q ss_pred eEEEEEeccCCCCCeEEEeccc
Q 009869 308 AVQLVVDRPYKAGESIVVWYNI 329 (523)
Q Consensus 308 ~~~l~a~r~i~~GeEv~isY~~ 329 (523)
.+.+.|.|+|.+||||+..||.
T Consensus 1274 Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1274 RVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred eeeeeecCCCCCCceEEEeccc
Confidence 4778899999999999999886
No 13
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=39.32 E-value=16 Score=40.19 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=25.7
Q ss_pred CccCCC-CCCceeEeeeCC--eEEEEEeccCCCCCeEEEe
Q 009869 290 PLLAYS-SKCKAMLAAVDD--AVQLVVDRPYKAGESIVVW 326 (523)
Q Consensus 290 mlnhh~-~~~~a~~~~~~~--~~~l~a~r~i~~GeEv~is 326 (523)
++||.. ++|.+......| .+..++.++|++||||.+.
T Consensus 408 ~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~d 447 (480)
T COG2940 408 FINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYD 447 (480)
T ss_pred eeecCCCCCcceecccccccceeeecccccchhhhhhccc
Confidence 456542 344444334434 6888899999999999999
No 14
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=33.34 E-value=40 Score=36.14 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCeEEEEEeccCCCCCeEEEecccccCCCccccCCCChHHHHHhcC
Q 009869 306 DDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYG 351 (523)
Q Consensus 306 ~~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~~sN~eLLl~YG 351 (523)
++.+-+++.|+|.+|||+.++ ||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVW-----------Y~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVW-----------YGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEE-----------eccchHhHhcccCC
Confidence 467889999999999999999 88766677777766
No 15
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=29.84 E-value=1.8e+02 Score=27.29 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CChHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 009869 439 MERAVLDQLADYFKARLAGYP-ATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNAC 495 (523)
Q Consensus 439 nE~~vl~~L~~~l~~~L~~y~-tt~eeDe~~L~~~~~s~r~~~A~~~R~~eK~IL~~~ 495 (523)
|-..+++-|++++.+.-..-+ .+-+||.+.+ ..+...|.+-|+.||++..+.
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~-----r~~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKI-----RIRKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHhhhHH
Confidence 456678888888888766544 5667887766 468889999999999987653
No 16
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=21.41 E-value=53 Score=24.69 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.7
Q ss_pred eEEEecCCCCCCeE
Q 009869 112 YVAASEDLQAGDAA 125 (523)
Q Consensus 112 Gl~At~dI~~ge~l 125 (523)
-++|++||++|++|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 48999999999987
Done!