Query 009870
Match_columns 523
No_of_seqs 370 out of 1601
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.4 5.8E-13 2E-17 104.5 8.9 67 1-68 1-67 (68)
2 3dxs_X Copper-transporting ATP 99.4 2.7E-12 9.1E-17 101.2 9.6 67 1-67 1-71 (74)
3 1cc8_A Protein (metallochapero 99.4 3.5E-12 1.2E-16 100.6 9.9 67 1-67 4-71 (73)
4 4a4j_A Pacszia, cation-transpo 99.3 8.2E-12 2.8E-16 96.9 10.1 65 2-66 2-69 (69)
5 3fry_A Probable copper-exporti 99.3 7.2E-12 2.5E-16 99.4 8.4 66 1-68 4-70 (73)
6 2crl_A Copper chaperone for su 99.2 2.2E-11 7.4E-16 103.3 8.9 68 2-69 19-86 (98)
7 2xmw_A PACS-N, cation-transpor 99.2 2.2E-10 7.7E-15 87.4 10.4 65 2-66 3-70 (71)
8 1mwy_A ZNTA; open-faced beta-s 99.1 2.3E-10 8E-15 89.0 10.3 66 1-66 2-69 (73)
9 2xmm_A SSR2857 protein, ATX1; 99.1 6.9E-11 2.3E-15 88.5 6.6 61 3-63 2-63 (64)
10 2l3m_A Copper-ION-binding prot 99.1 2.2E-10 7.6E-15 87.8 9.4 63 1-63 4-70 (71)
11 2qif_A Copper chaperone COPZ; 99.1 3.5E-10 1.2E-14 84.7 9.9 63 1-63 1-67 (69)
12 1y3j_A Copper-transporting ATP 99.1 1.2E-10 4E-15 91.6 7.6 67 1-67 2-72 (77)
13 2roe_A Heavy metal binding pro 99.1 9.2E-11 3.1E-15 89.7 6.7 63 4-66 2-65 (66)
14 1osd_A MERP, hypothetical prot 99.1 2.3E-10 7.9E-15 87.7 8.7 65 2-66 3-71 (72)
15 1aw0_A Menkes copper-transport 99.1 3E-10 1E-14 87.1 8.9 65 2-66 3-71 (72)
16 3cjk_B Copper-transporting ATP 99.1 5.4E-10 1.8E-14 86.9 10.0 66 2-67 2-71 (75)
17 2k2p_A Uncharacterized protein 99.1 1.3E-10 4.4E-15 95.9 6.4 62 2-63 22-84 (85)
18 1kvi_A Copper-transporting ATP 99.1 2.9E-10 9.8E-15 89.6 8.0 66 2-67 8-77 (79)
19 1opz_A Potential copper-transp 99.1 4.8E-10 1.6E-14 86.4 9.1 66 1-66 5-74 (76)
20 1jww_A Potential copper-transp 99.1 5.2E-10 1.8E-14 87.7 9.1 68 1-68 2-73 (80)
21 2g9o_A Copper-transporting ATP 99.1 4.7E-10 1.6E-14 92.6 8.8 69 2-70 3-78 (90)
22 2kt2_A Mercuric reductase; nme 99.0 4.4E-10 1.5E-14 85.8 7.8 63 4-66 2-67 (69)
23 1fvq_A Copper-transporting ATP 99.0 6.6E-10 2.3E-14 85.1 8.5 65 3-67 3-70 (72)
24 1q8l_A Copper-transporting ATP 99.0 4.6E-10 1.6E-14 90.5 7.9 67 2-68 9-79 (84)
25 1cpz_A Protein (COPZ); copper 99.0 7.3E-10 2.5E-14 83.8 8.4 62 4-65 2-67 (68)
26 1yjr_A Copper-transporting ATP 99.0 8.1E-10 2.8E-14 85.3 8.2 65 2-66 4-72 (75)
27 1yg0_A COP associated protein; 99.0 7.7E-10 2.6E-14 83.2 7.4 61 3-63 2-65 (66)
28 2ldi_A Zinc-transporting ATPas 99.0 7E-10 2.4E-14 83.9 7.2 64 1-64 2-69 (71)
29 2kyz_A Heavy metal binding pro 99.0 6.2E-10 2.1E-14 85.5 6.2 61 3-65 2-63 (67)
30 2kkh_A Putative heavy metal tr 99.0 2.1E-09 7.3E-14 88.9 9.8 69 1-69 15-87 (95)
31 2ofg_X Zinc-transporting ATPas 99.0 1.5E-09 5.3E-14 93.3 9.3 65 1-65 7-75 (111)
32 1qup_A Superoxide dismutase 1 99.0 1E-09 3.6E-14 106.9 9.0 70 2-71 6-75 (222)
33 2ew9_A Copper-transporting ATP 98.9 2.7E-09 9.3E-14 93.6 8.9 64 3-66 81-148 (149)
34 1p6t_A Potential copper-transp 98.9 2.5E-09 8.6E-14 94.4 8.5 68 2-69 74-145 (151)
35 1jk9_B CCS, copper chaperone f 98.9 3.4E-09 1.2E-13 105.0 7.8 68 3-70 8-75 (249)
36 2aj0_A Probable cadmium-transp 98.8 5.8E-09 2E-13 80.7 6.6 60 2-65 3-63 (71)
37 2rop_A Copper-transporting ATP 98.8 1.3E-08 4.5E-13 95.4 9.5 66 3-68 123-192 (202)
38 2ew9_A Copper-transporting ATP 98.7 2.4E-08 8E-13 87.6 8.8 66 1-66 3-72 (149)
39 3j09_A COPA, copper-exporting 98.5 3.4E-07 1.2E-11 102.7 9.8 64 3-66 3-70 (723)
40 2rop_A Copper-transporting ATP 98.5 2.8E-07 9.6E-12 86.3 7.7 63 2-64 20-89 (202)
41 1p6t_A Potential copper-transp 98.4 7.2E-07 2.5E-11 78.5 8.9 62 2-63 6-71 (151)
42 2x3d_A SSO6206; unknown functi 88.5 1.7 5.7E-05 37.1 7.9 64 2-66 5-78 (96)
43 3bpd_A Uncharacterized protein 88.3 1.5 5E-05 37.7 7.4 64 2-66 7-79 (100)
44 2raq_A Conserved protein MTH88 86.9 2.1 7E-05 36.6 7.5 65 2-67 7-80 (97)
45 3iot_A Maltose-binding protein 82.3 0.23 7.7E-06 51.3 -0.5 8 22-29 26-33 (449)
46 3cq1_A Putative uncharacterize 78.6 1.9 6.4E-05 36.4 4.1 35 4-38 43-83 (103)
47 1ff3_A Peptide methionine sulf 77.5 4.1 0.00014 39.4 6.6 26 13-38 49-74 (211)
48 1fvg_A Peptide methionine sulf 76.9 4.8 0.00016 38.6 6.8 28 13-40 50-77 (199)
49 1uwd_A Hypothetical protein TM 75.7 2.5 8.4E-05 35.6 4.0 36 3-38 43-84 (103)
50 2jsx_A Protein NAPD; TAT, proo 73.2 8.8 0.0003 32.3 6.8 47 13-59 16-63 (95)
51 1nwa_A Peptide methionine sulf 72.9 6.5 0.00022 37.8 6.6 46 13-58 32-95 (203)
52 4gwb_A Peptide methionine sulf 71.4 6.3 0.00022 36.8 6.0 47 13-59 9-73 (168)
53 3bqh_A PILB, peptide methionin 71.3 6 0.00021 37.7 5.9 27 13-39 9-35 (193)
54 3lvj_C Sulfurtransferase TUSA; 70.7 9.9 0.00034 30.7 6.4 54 4-66 11-67 (82)
55 1jdq_A TM006 protein, hypothet 69.7 11 0.00036 31.9 6.6 54 4-66 27-83 (98)
56 2j89_A Methionine sulfoxide re 68.8 8.6 0.0003 38.2 6.6 27 13-39 101-127 (261)
57 3lno_A Putative uncharacterize 67.9 3.3 0.00011 35.3 3.1 36 4-39 46-88 (108)
58 3e0m_A Peptide methionine sulf 66.5 9.3 0.00032 39.0 6.5 46 13-58 9-74 (313)
59 3hz7_A Uncharacterized protein 61.4 11 0.00039 30.9 5.1 52 5-66 3-59 (87)
60 2byk_A Chrac-16; nucleosome sl 61.4 2.1 7E-05 38.8 0.5 9 17-25 23-31 (140)
61 1ayz_A UBC2, ubiquitin-conjuga 57.4 2.4 8.2E-05 39.2 0.3 13 14-26 4-16 (169)
62 2nyt_A Probable C->U-editing e 57.3 15 0.00052 34.6 5.8 63 3-68 84-147 (190)
63 1d7q_A Translation initiation 56.3 10 0.00035 34.5 4.2 9 36-44 41-49 (143)
64 1je3_A EC005, hypothetical 8.6 53.4 11 0.00038 31.8 3.7 54 4-66 28-84 (97)
65 3v4k_A DNA DC->DU-editing enzy 51.7 31 0.0011 33.0 7.0 61 4-68 102-163 (203)
66 1owx_A Lupus LA protein, SS-B, 51.2 39 0.0013 29.5 7.0 56 4-59 19-76 (121)
67 1d7q_A Translation initiation 47.2 13 0.00045 33.8 3.4 7 137-143 99-105 (143)
68 3pim_A Peptide methionine sulf 45.5 14 0.00049 34.9 3.5 27 13-39 26-54 (187)
69 1lu4_A Soluble secreted antige 45.2 67 0.0023 25.9 7.4 54 5-67 28-85 (136)
70 2cvi_A 75AA long hypothetical 43.8 1E+02 0.0036 23.9 8.0 56 1-57 1-57 (83)
71 2kmw_A Uncharacterized protein 42.6 24 0.00081 31.9 4.4 20 27-46 23-43 (150)
72 1zzo_A RV1677; thioredoxin fol 42.2 88 0.003 25.0 7.6 52 5-65 29-85 (136)
73 3erw_A Sporulation thiol-disul 41.9 74 0.0025 25.9 7.2 57 4-66 37-99 (145)
74 1rm1_C Transcription initiatio 41.8 8.3 0.00028 38.7 1.3 6 56-61 46-51 (286)
75 3kcm_A Thioredoxin family prot 41.3 62 0.0021 27.0 6.7 53 5-66 32-91 (154)
76 3hou_D DNA-directed RNA polyme 40.0 3.8 0.00013 39.7 -1.4 9 80-88 31-39 (221)
77 3ha9_A Uncharacterized thiored 39.6 1E+02 0.0034 26.2 7.9 61 5-65 41-115 (165)
78 3ewl_A Uncharacterized conserv 37.5 1.4E+02 0.0047 24.5 8.2 51 6-66 32-92 (142)
79 3iab_B Ribonucleases P/MRP pro 36.7 6.6 0.00023 35.6 -0.3 17 40-56 32-48 (140)
80 3us3_A Calsequestrin-1; calciu 36.2 7.5 0.00026 39.3 0.0 12 47-58 110-121 (367)
81 1x4c_A Splicing factor, argini 35.7 95 0.0032 25.1 6.8 54 4-59 16-70 (108)
82 3us3_A Calsequestrin-1; calciu 35.1 8.8 0.0003 38.7 0.3 16 47-62 213-228 (367)
83 1pav_A Hypothetical protein TA 35.1 11 0.00038 29.8 0.9 52 5-65 8-62 (78)
84 2fwh_A Thiol:disulfide interch 35.1 67 0.0023 26.8 5.9 34 4-37 34-74 (134)
85 2zbc_A 83AA long hypothetical 34.9 1.5E+02 0.0051 22.6 7.9 55 2-57 2-57 (83)
86 3gl3_A Putative thiol:disulfid 33.5 59 0.002 27.1 5.3 54 5-67 32-91 (152)
87 3vow_A Probable DNA DC->DU-edi 33.4 64 0.0022 30.6 5.9 55 4-68 88-150 (190)
88 3eur_A Uncharacterized protein 32.3 2.1E+02 0.0071 23.5 8.6 45 10-63 41-93 (142)
89 3kz5_E Protein SOPB; partition 32.2 36 0.0012 25.8 3.1 25 3-27 22-48 (52)
90 4fo5_A Thioredoxin-like protei 31.9 1.8E+02 0.0061 24.0 8.1 49 6-63 37-91 (143)
91 3ia1_A THIO-disulfide isomeras 31.5 1.1E+02 0.0037 25.5 6.7 55 5-67 34-92 (154)
92 2ytc_A PRE-mRNA-splicing facto 31.2 1.2E+02 0.004 23.0 6.3 55 4-59 13-68 (85)
93 3lwa_A Secreted thiol-disulfid 31.2 64 0.0022 28.1 5.3 19 48-66 110-128 (183)
94 1kng_A Thiol:disulfide interch 30.1 1.4E+02 0.0048 24.7 7.1 50 5-64 46-99 (156)
95 3or5_A Thiol:disulfide interch 29.9 1.3E+02 0.0045 25.1 7.0 52 5-65 38-95 (165)
96 2cpq_A FragIle X mental retard 29.1 1.4E+02 0.0049 24.8 6.8 43 17-61 35-77 (91)
97 2b5x_A YKUV protein, TRXY; thi 28.5 1.2E+02 0.0042 24.6 6.4 57 5-65 33-94 (148)
98 3eyt_A Uncharacterized protein 28.3 64 0.0022 27.1 4.7 57 5-64 32-95 (158)
99 2dgo_A Cytotoxic granule-assoc 28.3 1.5E+02 0.005 24.0 6.8 55 4-59 16-77 (115)
100 2cq3_A RNA-binding protein 9; 28.2 1.7E+02 0.0059 23.0 7.1 54 4-58 16-74 (103)
101 3lor_A Thiol-disulfide isomera 28.1 2.1E+02 0.0072 23.7 8.0 58 5-65 34-98 (160)
102 2la4_A Nuclear and cytoplasmic 28.0 1.6E+02 0.0056 23.1 6.9 54 4-58 28-82 (101)
103 1whw_A Hypothetical protein ri 27.9 2E+02 0.0069 22.4 7.4 56 3-59 8-70 (99)
104 2f06_A Conserved hypothetical 27.8 2.8E+02 0.0096 23.5 9.2 63 1-64 4-70 (144)
105 2dnq_A RNA-binding protein 4B; 27.7 2.1E+02 0.0071 22.0 7.4 52 4-58 9-61 (90)
106 3md1_A Nuclear and cytoplasmic 27.6 1.7E+02 0.0057 21.9 6.6 55 4-59 2-63 (83)
107 3oiz_A Antisigma-factor antago 27.6 63 0.0021 26.3 4.3 65 4-70 18-86 (99)
108 1why_A Hypothetical protein ri 27.2 1.4E+02 0.0046 23.5 6.2 53 5-58 19-72 (97)
109 1t1v_A SH3BGRL3, SH3 domain-bi 27.2 47 0.0016 26.4 3.4 29 1-30 1-34 (93)
110 3ex7_B RNA-binding protein 8A; 27.1 1.6E+02 0.0054 24.2 6.9 54 4-58 23-83 (126)
111 1x4g_A Nucleolysin TIAR; struc 27.1 1.4E+02 0.0049 23.9 6.5 54 4-58 26-80 (109)
112 1x4a_A Splicing factor, argini 26.9 1.7E+02 0.0057 23.5 6.8 55 4-59 23-81 (109)
113 2w7v_A General secretion pathw 25.9 81 0.0028 26.5 4.7 51 17-68 15-71 (95)
114 3fkf_A Thiol-disulfide oxidore 25.5 2.5E+02 0.0087 22.6 7.9 54 5-67 37-97 (148)
115 2g2q_A Glutaredoxin-2; thiored 25.5 3E+02 0.01 24.3 8.3 29 1-30 1-30 (124)
116 2f1f_A Acetolactate synthase i 25.4 2.1E+02 0.0073 26.0 7.9 35 3-38 46-80 (164)
117 2dnz_A Probable RNA-binding pr 25.3 2.3E+02 0.0079 21.7 7.4 54 4-58 6-66 (95)
118 1whx_A Hypothetical protein ri 25.3 2E+02 0.0068 23.5 7.1 54 4-58 11-65 (111)
119 2cpj_A Non-POU domain-containi 25.2 1.3E+02 0.0044 23.7 5.7 53 5-58 17-70 (99)
120 2lxf_A Uncharacterized protein 25.1 1.2E+02 0.004 26.6 5.7 56 2-58 34-94 (121)
121 2cvb_A Probable thiol-disulfid 24.8 1.8E+02 0.0063 25.2 7.2 60 5-66 37-101 (188)
122 2cph_A RNA binding motif prote 24.8 1.6E+02 0.0054 23.3 6.3 55 4-59 16-78 (107)
123 2ko1_A CTR148A, GTP pyrophosph 24.7 1.3E+02 0.0046 22.9 5.6 11 49-59 59-69 (88)
124 2qn6_B Translation initiation 24.3 93 0.0032 26.0 4.7 24 3-26 5-30 (93)
125 3ulh_A THO complex subunit 4; 24.0 2E+02 0.0068 22.8 6.8 55 4-59 30-90 (107)
126 3kh7_A Thiol:disulfide interch 23.9 1.3E+02 0.0044 26.3 6.0 50 5-64 62-114 (176)
127 4euy_A Uncharacterized protein 23.9 2.2E+02 0.0076 22.1 6.9 34 4-37 21-58 (105)
128 2vh7_A Acylphosphatase-1; hydr 23.8 1.7E+02 0.0057 24.3 6.3 58 2-60 8-70 (99)
129 3hdc_A Thioredoxin family prot 23.6 71 0.0024 27.1 4.1 34 4-37 44-83 (158)
130 3beg_B Splicing factor, argini 23.5 1E+02 0.0034 25.4 4.9 54 4-59 17-71 (115)
131 3fze_A Protein STE5; alpha/bet 23.1 23 0.0008 33.6 0.9 56 4-59 22-88 (196)
132 3k8g_A 30KLP; outmer membrane 22.3 42 0.0014 33.0 2.4 53 4-59 202-255 (262)
133 2f06_A Conserved hypothetical 22.0 3.5E+02 0.012 22.9 8.3 58 6-63 75-135 (144)
134 2kt5_A RNA and export factor-b 22.0 2.4E+02 0.0083 23.1 7.1 54 4-58 36-95 (124)
135 2f9s_A Thiol-disulfide oxidore 21.8 95 0.0032 25.8 4.5 52 5-65 30-87 (151)
136 2fy1_A RNA-binding motif prote 21.7 2.6E+02 0.0088 23.0 7.1 55 4-59 8-68 (116)
137 4a8x_A RNA-binding protein wit 21.6 2.1E+02 0.0071 21.6 6.1 56 2-58 3-66 (88)
138 2pc6_A Probable acetolactate s 21.5 2.5E+02 0.0085 25.6 7.5 34 3-37 47-80 (165)
139 2yzh_A Probable thiol peroxida 21.5 3.8E+02 0.013 22.8 9.1 47 10-66 58-108 (171)
140 2dnh_A Bruno-like 5, RNA bindi 21.5 2.1E+02 0.0073 22.5 6.4 54 4-58 16-75 (105)
141 2gjh_A Designed protein; oblig 21.5 1.4E+02 0.0048 22.6 4.6 44 1-45 1-48 (62)
142 2k1h_A Uncharacterized protein 21.4 1.2E+02 0.0042 25.3 4.9 43 14-59 37-81 (94)
143 3nzj_F Proteasome component C1 21.4 21 0.00071 35.5 0.2 8 49-56 85-92 (288)
144 3rdw_A Putative arsenate reduc 21.3 83 0.0028 26.9 4.0 46 10-63 13-59 (121)
145 2l5o_A Putative thioredoxin; s 21.2 2.1E+02 0.007 23.6 6.5 54 5-66 32-91 (153)
146 1rk8_A CG8781-PA, CG8781-PA pr 21.0 20 0.0007 31.7 0.0 24 185-208 3-26 (165)
147 2lrn_A Thiol:disulfide interch 20.9 2.6E+02 0.0089 23.2 7.2 53 5-66 33-91 (152)
148 1yz7_A Probable translation in 20.9 2.7E+02 0.0091 26.1 7.7 23 3-25 90-114 (188)
149 1sig_A Sigma70, RNA polymerase 20.9 33 0.0011 34.3 1.5 31 176-206 71-101 (339)
150 1wex_A Hypothetical protein (r 20.9 2.9E+02 0.0098 22.6 7.2 54 4-58 16-70 (104)
151 2lja_A Putative thiol-disulfid 20.6 3.4E+02 0.012 22.1 7.8 50 5-63 34-89 (152)
152 2dgv_A HnRNP M, heterogeneous 20.6 2E+02 0.0068 22.0 5.9 54 4-58 9-67 (92)
153 2fhm_A Probable acylphosphatas 20.6 2.8E+02 0.0095 22.5 6.9 64 1-65 1-69 (91)
154 2x1f_A MRNA 3'-END-processing 20.2 3E+02 0.01 21.3 7.0 53 5-58 4-63 (96)
155 3bs9_A Nucleolysin TIA-1 isofo 20.2 2.6E+02 0.009 21.0 6.5 55 4-59 7-68 (87)
156 2do0_A HnRNP M, heterogeneous 20.2 1.8E+02 0.0063 23.3 5.8 54 5-59 17-76 (114)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.41 E-value=5.8e-13 Score=104.52 Aligned_cols=67 Identities=30% Similarity=0.550 Sum_probs=62.8
Q ss_pred CeEEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCc
Q 009870 1 MQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 1 Mqkv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~ 68 (523)
|.+++|+|.|+|.+|+.+|+++|++++|| +++||+.+++++|+..+++++|+++|+++||++++|+.
T Consensus 1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 57888999999999999999999999999 99999999999999989999999999999999998764
No 2
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.36 E-value=2.7e-12 Score=101.20 Aligned_cols=67 Identities=24% Similarity=0.455 Sum_probs=62.5
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEcC
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~~ 67 (523)
|++++|+|+ |+|.+|+.+|+++|++++||.+++|++.+.+++|+.+ +++++|+++|+++||+++++.
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 788999999 9999999999999999999999999999999999843 689999999999999998764
No 3
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.35 E-value=3.5e-12 Score=100.62 Aligned_cols=67 Identities=27% Similarity=0.480 Sum_probs=62.6
Q ss_pred CeEEEEEEeecCHHHHHHHHHHHhcCC-CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009870 1 MQTYVLKVNIHCDGCKHKVKKILQKID-GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 1 Mqkv~LkVeM~C~~Ca~kIEKaL~kl~-GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~ 67 (523)
|.+++|+|+|+|.+|+.+|+++|++++ ||.+++||+.+++++|+..+++++|+++|+++||++++|.
T Consensus 4 m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 4 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 467889999999999999999999999 9999999999999999988899999999999999988764
No 4
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.32 E-value=8.2e-12 Score=96.89 Aligned_cols=65 Identities=25% Similarity=0.557 Sum_probs=60.6
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ecCCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~vd~~eIikaI~kaGy~a~l~ 66 (523)
++++|.|+ |+|.+|+.+|+++|++++||.+++|++.+.+++|+ ..+++++|+++|+++||+++++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 69 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 69 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence 57899999 99999999999999999999999999999999998 4589999999999999998763
No 5
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.29 E-value=7.2e-12 Score=99.35 Aligned_cols=66 Identities=26% Similarity=0.458 Sum_probs=61.9
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCc
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~ 68 (523)
|++++|+|+ |+|.+|+.+|+++|++ +||..++|++.+.+++|+.+ ++++|+++|+++||.++++..
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~ 70 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSS 70 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCS
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCc
Confidence 578899999 9999999999999999 99999999999999999987 999999999999999987753
No 6
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-11 Score=103.28 Aligned_cols=68 Identities=26% Similarity=0.386 Sum_probs=62.9
Q ss_pred eEEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCcc
Q 009870 2 QTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQ 69 (523)
Q Consensus 2 qkv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~~ 69 (523)
.+++|+|+|+|.+|+++|+++|++++||.+|+|++.+.+++|+..+++++|+++|+++||+++++...
T Consensus 19 ~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~ 86 (98)
T 2crl_A 19 CTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG 86 (98)
T ss_dssp EEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESC
T ss_pred eEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCC
Confidence 46788888999999999999999999999999999999999998889999999999999999887654
No 7
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.15 E-value=2.2e-10 Score=87.35 Aligned_cols=65 Identities=23% Similarity=0.504 Sum_probs=58.4
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~--vd~~eIikaI~kaGy~a~l~ 66 (523)
++++|+|. |+|..|+.+|+++|.+++||.+++|++.+.+++|+.+ ++.++|+++|+++||.++++
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~ 70 (71)
T 2xmw_A 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 70 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCceeC
Confidence 56889999 9999999999999999999999999999999999843 67889999999999987653
No 8
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.15 E-value=2.3e-10 Score=88.96 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=59.2
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecC-CHHHHHHHHHHcCCceEEc
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNV-DPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~v-d~~eIikaI~kaGy~a~l~ 66 (523)
|.+++|+|. |+|.+|+.+|+++|.+++||.+++|++.+.+++|+.+. ..++|+++|+++||.+...
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~~ 69 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDE 69 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEEC
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccccc
Confidence 578899999 99999999999999999999999999999999998542 4678999999999987654
No 9
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.14 E-value=6.9e-11 Score=88.47 Aligned_cols=61 Identities=30% Similarity=0.437 Sum_probs=57.2
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCce
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a 63 (523)
+++|+|. |+|.+|+++|+++|++++||.+++|++.+.+++|+..++.++|+++|+++||.+
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 4679999 999999999999999999999999999999999997788999999999999975
No 10
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.13 E-value=2.2e-10 Score=87.82 Aligned_cols=63 Identities=19% Similarity=0.422 Sum_probs=57.4
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCce
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a 63 (523)
|.+++|+|. |+|..|+.+|+++|.+++||.+++|++.+.+++|+. .+++++|+++|+++||.+
T Consensus 4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 457889999 999999999999999999999999999999999974 367899999999999975
No 11
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.12 E-value=3.5e-10 Score=84.72 Aligned_cols=63 Identities=27% Similarity=0.466 Sum_probs=57.8
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCce
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a 63 (523)
|.+++|+|. |+|..|+.+|+++|.++++|.+++|++.+.+++|+. .+++++|+++|+++||.+
T Consensus 1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 567899999 999999999999999999999999999999999984 367889999999999965
No 12
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.12 E-value=1.2e-10 Score=91.57 Aligned_cols=67 Identities=18% Similarity=0.422 Sum_probs=61.2
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEcC
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~~ 67 (523)
|++++|+|. |+|.+|+.+|+++|.+++||.+++|++.+.+++|+.+ +++++|+++|+++||.+.++.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 72 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE 72 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence 678999999 9999999999999999999999999999999999843 678899999999999987654
No 13
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.12 E-value=9.2e-11 Score=89.74 Aligned_cols=63 Identities=33% Similarity=0.614 Sum_probs=57.7
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~ 66 (523)
++|+|+ |+|.+|+.+|+++|++++||.+++|++.+.+++|...+++++|+++|+++||.++.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 65 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEEC
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEec
Confidence 468999 999999999999999999999999999999999965678999999999999987653
No 14
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.11 E-value=2.3e-10 Score=87.74 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=58.8
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~ 66 (523)
++++|+|. |+|.+|+.+|+++|.+++||.+++|++.+.+++|+.+ ++.++|+++|+++||.+++.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1osd_A 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71 (72)
T ss_dssp EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred eEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEec
Confidence 56789999 9999999999999999999999999999999999743 67899999999999987653
No 15
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.10 E-value=3e-10 Score=87.06 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=58.7
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~ 66 (523)
++++|+|. |+|.+|+.+|+++|++++||.+++|++.+.+++|+.+ ++.++|+++|+++||.+.+.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS 71 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence 46789999 9999999999999999999999999999999999853 67899999999999987653
No 16
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.09 E-value=5.4e-10 Score=86.93 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=59.6
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEcC
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~~ 67 (523)
.+++|+|. |+|.+|+.+|+++|.+++||.+++|++.+.+++|+.+ ++.++|+++|+++||.++++.
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 46789999 9999999999999999999999999999999999843 578999999999999887654
No 17
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.08 E-value=1.3e-10 Score=95.88 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=58.5
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCce
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a 63 (523)
.+++|.|+ |+|..|+++|+++|++++||.+++|++.+.+++|+..+++++|+++|+++||.+
T Consensus 22 ~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 56789999 999999999999999999999999999999999998889999999999999975
No 18
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.08 E-value=2.9e-10 Score=89.57 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=59.7
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEcC
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~~ 67 (523)
.+++|+|. |+|.+|+++|+++|++++||.+++|++.+.+++|+.+ ++.++|+++|+++||.+++..
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 77 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 77 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence 56889999 9999999999999999999999999999999999843 578899999999999887654
No 19
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.07 E-value=4.8e-10 Score=86.40 Aligned_cols=66 Identities=20% Similarity=0.407 Sum_probs=59.4
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceEEc
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~l~ 66 (523)
|.+++|+|. |+|..|+.+|+++|.++++|.+++|++.+.+++|+. .+++++|+++|+++||.+.++
T Consensus 5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 74 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE 74 (76)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence 457889999 999999999999999999999999999999999974 367899999999999987654
No 20
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=99.07 E-value=5.2e-10 Score=87.65 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=61.3
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceEEcCc
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~l~~~ 68 (523)
|.+++|+|. |+|.+|+.+|+++|.++++|.+++|++.+.+++|.. .++.++|+++|+++||.+.++..
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 73 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 73 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECCS
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecCc
Confidence 577899999 999999999999999999999999999999999974 36788999999999999877653
No 21
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=99.06 E-value=4.7e-10 Score=92.63 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=60.8
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHc---CCceEEcCccc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKS---GKHAELWGAQK 70 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~ka---Gy~a~l~~~~~ 70 (523)
.+++|+|. |+|..|+++|+++|.+++||.+++|++.+.+++|+. .+++++|+++|+++ ||++.++....
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~~ 78 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEVE 78 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC-
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 35789999 999999999999999999999999999999999984 36789999999999 59888776543
No 22
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=99.05 E-value=4.4e-10 Score=85.85 Aligned_cols=63 Identities=29% Similarity=0.467 Sum_probs=56.7
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHHcCCceEEc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~--vd~~eIikaI~kaGy~a~l~ 66 (523)
++|+|. |+|.+|+.+|+++|++++||.+++|++.+.+++|+.+ ++.++|+++|+++||.+++.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 67 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA 67 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence 358899 9999999999999999999999999999999999743 67899999999999987653
No 23
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.04 E-value=6.6e-10 Score=85.14 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=59.2
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe--cCCHHHHHHHHHHcCCceEEcC
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g--~vd~~eIikaI~kaGy~a~l~~ 67 (523)
+++|+|+ |+|.+|+.+|+++|.+++||.+++|++.+.+++|+. .++.++|+++|+++||.++++.
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 5789999 999999999999999999999999999999999984 3678899999999999987763
No 24
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=99.04 E-value=4.6e-10 Score=90.53 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=60.2
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEcCc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~~~ 68 (523)
.+++|+|+ |+|.+|+.+|+++|.+++||.+++|++.+.+++|+.+ ++.++|+++|+++||.++++..
T Consensus 9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 79 (84)
T 1q8l_A 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ 79 (84)
T ss_dssp EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence 46789999 9999999999999999999999999999999999853 6789999999999999876553
No 25
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.03 E-value=7.3e-10 Score=83.77 Aligned_cols=62 Identities=19% Similarity=0.422 Sum_probs=56.6
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEE
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l 65 (523)
++|+|. |+|..|+.+|+++|.+++||.++++++.+++++|+.+ ++.++|+++|+++||++++
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 468999 9999999999999999999999999999999999843 6789999999999998765
No 26
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.02 E-value=8.1e-10 Score=85.32 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=58.2
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~ 66 (523)
.+++|+|. |+|.+|+.+|+++|.+++||.++++++.+.+++|+.+ +++++|+++|+++||.+.+.
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 72 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLV 72 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEES
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceee
Confidence 45789999 9999999999999999999999999999999999853 56788999999999987654
No 27
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.00 E-value=7.7e-10 Score=83.17 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=55.6
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHHcCCce
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~--vd~~eIikaI~kaGy~a 63 (523)
+++|+|. |+|.+|+++|+++|++++||.++++++.+.+++|+.+ ++.++|+++|+++||.+
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~ 65 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 4678999 9999999999999999999999999999999999843 57889999999999974
No 28
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=99.00 E-value=7e-10 Score=83.92 Aligned_cols=64 Identities=22% Similarity=0.497 Sum_probs=57.7
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceE
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAE 64 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~ 64 (523)
+.+++|+|. |+|.+|+.+|+++|+++++|.+++|++.+.+++|+. .++.++|+++|+++||.+.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 69 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA 69 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence 457889999 999999999999999999999999999999999974 3577899999999999764
No 29
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=98.98 E-value=6.2e-10 Score=85.50 Aligned_cols=61 Identities=33% Similarity=0.500 Sum_probs=55.2
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEE
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l 65 (523)
+++|.|. |+|.+|+.+|+++|+++ ||.+++|++.+.+++|+.+.+ ++|+++|+++||.+.+
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~ 63 (67)
T 2kyz_A 2 RYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVES 63 (67)
T ss_dssp EEEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCB
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceee
Confidence 3679999 99999999999999999 999999999999999986655 8899999999998654
No 30
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=98.98 E-value=2.1e-09 Score=88.86 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=61.5
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEcCcc
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGAQ 69 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~~~~ 69 (523)
|.+++|.|. |+|.+|+.+|+++|.++++|..++|++.+.+++|+.+ ++.+.|+++|+++||.+.++...
T Consensus 15 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 87 (95)
T 2kkh_A 15 LQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNG 87 (95)
T ss_dssp SEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCCC
T ss_pred eEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecCC
Confidence 456889999 9999999999999999999999999999999999843 57889999999999998776543
No 31
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=98.98 E-value=1.5e-09 Score=93.30 Aligned_cols=65 Identities=25% Similarity=0.483 Sum_probs=59.1
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEE
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l 65 (523)
|.+++|+|. |+|..|+++|+++|+++++|.+|+|++.+.+++|+.+ +++++|+++|+++||.+.+
T Consensus 7 ~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (111)
T 2ofg_X 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAE 75 (111)
T ss_dssp CEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEEC
T ss_pred ceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeee
Confidence 467889999 9999999999999999999999999999999999843 6789999999999998754
No 32
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.97 E-value=1e-09 Score=106.90 Aligned_cols=70 Identities=30% Similarity=0.554 Sum_probs=63.5
Q ss_pred eEEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCcccc
Q 009870 2 QTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQKA 71 (523)
Q Consensus 2 qkv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~~~~ 71 (523)
.+++|+|+|+|.+|+++||++|+++++|.+++|++.+.+++|+..+++++|+++|+++||+++++.....
T Consensus 6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~~ 75 (222)
T 1qup_A 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 75 (222)
T ss_dssp EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSCT
T ss_pred eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCCc
Confidence 3567888899999999999999999999999999999999999888999999999999999988765444
No 33
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.92 E-value=2.7e-09 Score=93.62 Aligned_cols=64 Identities=25% Similarity=0.463 Sum_probs=58.5
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEEc
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l~ 66 (523)
+++|+|+ |+|.+|+++|+++|++++||.+++|++.+.+++|+.+ +++++|+++|+++||.++++
T Consensus 81 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 148 (149)
T 2ew9_A 81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA 148 (149)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred eeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence 5789999 9999999999999999999999999999999999843 68899999999999987653
No 34
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.92 E-value=2.5e-09 Score=94.42 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=61.3
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceEEcCcc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWGAQ 69 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~l~~~~ 69 (523)
.+++|+|. |+|.+|+++|+++|++++||.+++|++.+.+++|+. .+++++|+++|+++||.+.++...
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 145 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQ 145 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCSS
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCcc
Confidence 35789999 999999999999999999999999999999999984 368999999999999998876543
No 35
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.85 E-value=3.4e-09 Score=105.03 Aligned_cols=68 Identities=31% Similarity=0.577 Sum_probs=61.8
Q ss_pred EEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCccc
Q 009870 3 TYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQK 70 (523)
Q Consensus 3 kv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~~~ 70 (523)
+++|+|+|+|.+|+.+||++|++++||.+|+|++.+.+++|+..+++++|+++|+++||+++++....
T Consensus 8 ~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~ 75 (249)
T 1jk9_B 8 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK 75 (249)
T ss_dssp EEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESS
T ss_pred eEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCc
Confidence 46788889999999999999999999999999999999999988899999999999999988765443
No 36
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.82 E-value=5.8e-09 Score=80.69 Aligned_cols=60 Identities=25% Similarity=0.579 Sum_probs=52.4
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEE
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l 65 (523)
.+++|.|. |+|.+|+.+|+++|++++||.+++|++.+.+++|+...+ +++|+++||.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~ 63 (71)
T 2aj0_A 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63 (71)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence 46789999 999999999999999999999999999999999986653 5578889987543
No 37
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=95.44 Aligned_cols=66 Identities=21% Similarity=0.444 Sum_probs=59.2
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceEEcCc
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~l~~~ 68 (523)
+++|+|. |+|.+|+++|+++|.+++||.+++|++.+.+++|+. .+++++|+++|+++||.+.++..
T Consensus 123 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 192 (202)
T 2rop_A 123 TTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSE 192 (202)
T ss_dssp EEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCC
Confidence 5789999 999999999999999999999999999999999984 36889999999999999887654
No 38
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.75 E-value=2.4e-08 Score=87.57 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=59.9
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceEEc
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~l~ 66 (523)
|++++|+|. |+|.+|+++|+++|+++++|.+++|++.+.+++|+. .+++++|+++|+++||.+.++
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 72 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM 72 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEee
Confidence 578899999 999999999999999999999999999999999874 367889999999999987654
No 39
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.45 E-value=3.4e-07 Score=102.70 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCceEEc
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a~l~ 66 (523)
+++|+|+ |+|.+|+++||++|++++||.+++|++.+++++|+. .+++++|+++|+++||+++..
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~ 70 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDE 70 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSC
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccccc
Confidence 4789999 999999999999999999999999999999999984 368999999999999987644
No 40
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.45 E-value=2.8e-07 Score=86.33 Aligned_cols=63 Identities=17% Similarity=0.376 Sum_probs=55.8
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHc---CCceE
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKS---GKHAE 64 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~ka---Gy~a~ 64 (523)
.+++|+|. |+|.+|+++|+++|.+++||.+++|++.+.+++|+.+ +++++|+++|+++ +|.+.
T Consensus 20 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~ 89 (202)
T 2rop_A 20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS 89 (202)
T ss_dssp CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred EEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence 56789999 9999999999999999999999999999999999743 6788999999998 36554
No 41
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.41 E-value=7.2e-07 Score=78.53 Aligned_cols=62 Identities=21% Similarity=0.456 Sum_probs=55.6
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe---cCCHHHHHHHHHHcCCce
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g---~vd~~eIikaI~kaGy~a 63 (523)
.+++|.|. |+|.+|+.+|+++|.++++|.+++|++.+.+++|+. .+++++|.++|+++||.+
T Consensus 6 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (151)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred eEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence 46789999 999999999999999999999999999999998873 257888999999999964
No 42
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=88.54 E-value=1.7 Score=37.11 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=45.0
Q ss_pred eEEEEEEe--ecCHHHHHHHHHHHhcCCCeeEEEE-----ecCCCEEEE--Ee-cCCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSI-----DSEQGKVTV--SG-NVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe--M~C~~Ca~kIEKaL~kl~GV~sV~V-----Dl~sgkVtV--~g-~vd~~eIikaI~kaGy~a~l~ 66 (523)
++++|.|. +|-.+-. .+.+.|++++||..|++ |.++..+.| ++ .++.++|.++|++.|-.++.+
T Consensus 5 rRlVLDVlKP~h~P~iv-d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSI 78 (96)
T 2x3d_A 5 RRLVLDVLKPIRGTSIV-DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSI 78 (96)
T ss_dssp EEEEEEEEEESSSSCHH-HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcccCCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 56777777 4655543 56677899999876654 344444444 44 499999999999999876644
No 43
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=88.27 E-value=1.5 Score=37.68 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=44.2
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEE-----ecCCCEEEE--Ee-cCCHHHHHHHHHHcCCceEEc
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSI-----DSEQGKVTV--SG-NVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~V-----Dl~sgkVtV--~g-~vd~~eIikaI~kaGy~a~l~ 66 (523)
++++|.|. -+-.+ .-.+.+.|.+++||..|++ |.++..+.| ++ +++.++|.++|++.|-.++.+
T Consensus 7 RRlVLDVlKPh~P~-ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSI 79 (100)
T 3bpd_A 7 RRLVLDVLKPHEPK-TIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSV 79 (100)
T ss_dssp EEEEEEEEEESCSC-HHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEE
T ss_pred eEEEEEecCCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 56777776 54444 3456677899999876654 344444444 44 599999999999999876544
No 44
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=86.94 E-value=2.1 Score=36.65 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=44.0
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEE-----ecCCCEEEEE--e-cCCHHHHHHHHHHcCCceEEcC
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSI-----DSEQGKVTVS--G-NVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~V-----Dl~sgkVtV~--g-~vd~~eIikaI~kaGy~a~l~~ 67 (523)
++++|.|. -|-.+ .-.+.+.|.+++||..|++ |.++..+.|+ + .++.++|.++|++.|-.++.+.
T Consensus 7 rRlVLDVlKPh~p~-i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSID 80 (97)
T 2raq_A 7 IRIVLDILKPHEPI-IPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVD 80 (97)
T ss_dssp EEEEEEEECCSCSC-HHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEecCCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 56677776 54443 3355666888888865544 4555555544 4 5999999999999998766443
No 45
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=82.33 E-value=0.23 Score=51.30 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.3
Q ss_pred HHhcCCCe
Q 009870 22 ILQKIDGV 29 (523)
Q Consensus 22 aL~kl~GV 29 (523)
.+++..+|
T Consensus 26 ~F~~~~gi 33 (449)
T 3iot_A 26 KFEKDTGI 33 (449)
T ss_dssp HHHHHHSC
T ss_pred HHhhccCC
Confidence 33333454
No 46
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=78.59 E-value=1.9 Score=36.37 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=26.3
Q ss_pred EEEEEeecCHHH------HHHHHHHHhcCCCeeEEEEecCC
Q 009870 4 YVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDSEQ 38 (523)
Q Consensus 4 v~LkVeM~C~~C------a~kIEKaL~kl~GV~sV~VDl~s 38 (523)
++|.|.++|..| ...|+++|++++||.+|+|++..
T Consensus 43 V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 43 AYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp EEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 445555777777 56789999999999988887543
No 47
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=77.49 E-value=4.1 Score=39.36 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCC
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQ 38 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~s 38 (523)
..|-|-+|+.+.+|+||.++.+-+..
T Consensus 49 gGCFWg~E~~F~~l~GV~~t~vGYaG 74 (211)
T 1ff3_A 49 MGXFWGVERLFWQLPGVYSTAAGYTG 74 (211)
T ss_dssp CSSHHHHHHHHHTSTTEEEEEEEEES
T ss_pred cCCeEEehhhHhcCCCeEEEEeeecC
Confidence 57888899999999999999987663
No 48
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=76.88 E-value=4.8 Score=38.56 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCE
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQGK 40 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sgk 40 (523)
..|-|-+|+.+.+|+||.++.|-+..+.
T Consensus 50 gGCFWg~E~~F~~l~GV~~t~vGYagG~ 77 (199)
T 1fvg_A 50 MGCFWGAERKFWTLKGVYSTQVGFAGGY 77 (199)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSS
T ss_pred cCCeeeeHHHHhhCCCeEEEEeeccCCC
Confidence 5788889999999999999998766543
No 49
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=75.70 E-value=2.5 Score=35.58 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.9
Q ss_pred EEEEEEeecCHHH------HHHHHHHHhcCCCeeEEEEecCC
Q 009870 3 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDSEQ 38 (523)
Q Consensus 3 kv~LkVeM~C~~C------a~kIEKaL~kl~GV~sV~VDl~s 38 (523)
+++|.|.+++..| ...|+++|++++||.+|+|++..
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~ 84 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTF 84 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEec
Confidence 3455566666666 45688899999999988887543
No 50
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=73.17 E-value=8.8 Score=32.32 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE-ecCCHHHHHHHHHHc
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKS 59 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~-g~vd~~eIikaI~ka 59 (523)
..-...|.++|.++++|+-..++..+.+++|+ ...+.++|.+.|+++
T Consensus 16 p~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I 63 (95)
T 2jsx_A 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESV 63 (95)
T ss_dssp TTSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHH
Confidence 34478899999999999544556667788776 345677777776654
No 51
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=72.86 E-value=6.5 Score=37.77 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC---------------EEEEEe---cCCHHHHHHHHHH
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQG---------------KVTVSG---NVDPSVLIKKLAK 58 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sg---------------kVtV~g---~vd~~eIikaI~k 58 (523)
..|-|.+|+.+.+|+||.++.|-+..+ .|.|+. .|+.++|++..-+
T Consensus 32 gGCFWg~E~~F~~l~GV~~t~vGYaGG~~~nPtYe~~G~HaEaV~V~yDp~~iSy~~LL~~Ff~ 95 (203)
T 1nwa_A 32 GGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQ 95 (203)
T ss_dssp ESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHH
T ss_pred cCCeeeeHHHHhcCCCeEEEEeeecCCCCCCCChhhcCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 578888999999999999999876543 344553 3788888887654
No 52
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=71.38 E-value=6.3 Score=36.76 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC---------------EEEEEe---cCCHHHHHHHHHHc
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQG---------------KVTVSG---NVDPSVLIKKLAKS 59 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sg---------------kVtV~g---~vd~~eIikaI~ka 59 (523)
..|-|-+|..+.+|+||.++++-+..+ .|.|+. .|+.++|++..-++
T Consensus 9 gGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~ 73 (168)
T 4gwb_A 9 GGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQI 73 (168)
T ss_dssp ESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred ccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhh
Confidence 578888999999999999999876643 445553 37888888876544
No 53
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=71.27 E-value=6 Score=37.69 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQG 39 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sg 39 (523)
..|-|.+|..+.+|+||.++.|-++.+
T Consensus 9 gGCFWg~E~~F~~~~GV~~t~vGYagG 35 (193)
T 3bqh_A 9 GGCFWGLEAYFQRIDGVVDAVSGYANG 35 (193)
T ss_dssp ESCHHHHHHHHHTSTTEEEEEEEEESC
T ss_pred cCCeeehHHHHhcCCCEEEEEEeccCC
Confidence 578888899999999999999876544
No 54
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=70.67 E-value=9.9 Score=30.70 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=39.3
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ecCCHHHHHHHHHHcCCceEEc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~vd~~eIikaI~kaGy~a~l~ 66 (523)
++|.+. +.|..-+-+++++|.+++- ...++|. .....+.|.+.+++.||.+...
T Consensus 11 ~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 11 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 456666 9999999999999998731 1233333 3356778999999999987654
No 55
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=69.67 E-value=11 Score=31.87 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=39.9
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ecCCHHHHHHHHHHcCCceEEc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~vd~~eIikaI~kaGy~a~l~ 66 (523)
++|.+. +.|..-+-+++++|.+++- ...++|. .....+.|.+.+++.||.+...
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEI 83 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 456666 9999999999999998732 1234443 2356788999999999987654
No 56
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=68.77 E-value=8.6 Score=38.20 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQG 39 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sg 39 (523)
..|-|-+|+.+.+++||.++.|-+..+
T Consensus 101 gGCFWgvE~~F~~l~GV~~t~vGYaGG 127 (261)
T 2j89_A 101 AGCFWGVELAFQRVPGVTKTEVGYTQG 127 (261)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESS
T ss_pred cCCeeeeHHHHhhCCCeEEEEeeecCC
Confidence 578888999999999999999876554
No 57
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=67.87 E-value=3.3 Score=35.26 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=26.3
Q ss_pred EEEEEeecCHHH------HHHHHHHH-hcCCCeeEEEEecCCC
Q 009870 4 YVLKVNIHCDGC------KHKVKKIL-QKIDGVFTTSIDSEQG 39 (523)
Q Consensus 4 v~LkVeM~C~~C------a~kIEKaL-~kl~GV~sV~VDl~sg 39 (523)
++|.|.+++..| ...|+++| ++++||.+|+|++...
T Consensus 46 V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~ 88 (108)
T 3lno_A 46 AVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWN 88 (108)
T ss_dssp EEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCS
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEec
Confidence 455566666666 56788888 8999998888876543
No 58
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=66.45 E-value=9.3 Score=38.95 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCE-----------------EEEEe---cCCHHHHHHHHHH
Q 009870 13 DGCKHKVKKILQKIDGVFTTSIDSEQGK-----------------VTVSG---NVDPSVLIKKLAK 58 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl~GV~sV~VDl~sgk-----------------VtV~g---~vd~~eIikaI~k 58 (523)
..|-|-+|..+.+|+||.+|.+-++.+. |.|+. .|+.++|++..-+
T Consensus 9 gGCFWg~E~~F~~l~GV~~t~~GYagG~~~nPtY~~Vc~TGHaEaV~V~yDp~~isy~~LL~~f~~ 74 (313)
T 3e0m_A 9 GGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFR 74 (313)
T ss_dssp CSCHHHHHHHHTTSTTEEEEEEEEESCSSSCCCTTTHHHHTCEEEEEEEECTTTSCHHHHHHHHHH
T ss_pred cCCchhhHHHHhhCCCeEEeecccCCCCCCCCChhhhccCCCeEEEEEEECCCcCCHHHHHHHHHh
Confidence 6788999999999999999998766443 44553 3788888876544
No 59
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=61.45 E-value=11 Score=30.90 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=38.9
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCC--CeeEEEEecCCCEEEEE--ecCCHHHHHHHHHHcCCceEEc
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKID--GVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~--GV~sV~VDl~sgkVtV~--g~vd~~eIikaI~kaGy~a~l~ 66 (523)
+|.+. +.|+.-+-+++++|.+++ | .+++|. ...+.+.|.+.+++.||.+...
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~~G----------~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~ 59 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGEAG----------GVVTVLVDNDISRQNLQKMAEGMGYQSEYL 59 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGGGC----------CEEEEEESSHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccCCC----------CEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 36666 899999999999999873 3 233443 2356788999999999987654
No 60
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=61.43 E-value=2.1 Score=38.84 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=1.2
Q ss_pred HHHHHHHhc
Q 009870 17 HKVKKILQK 25 (523)
Q Consensus 17 ~kIEKaL~k 25 (523)
.+|+++++.
T Consensus 23 aRIKrIMK~ 31 (140)
T 2byk_A 23 SRVRTIMKS 31 (140)
T ss_dssp ------CCS
T ss_pred HHHHHHHhc
Confidence 344444443
No 61
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=57.38 E-value=2.4 Score=39.15 Aligned_cols=13 Identities=0% Similarity=0.332 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhcC
Q 009870 14 GCKHKVKKILQKI 26 (523)
Q Consensus 14 ~Ca~kIEKaL~kl 26 (523)
.+..+|.+.|+.+
T Consensus 4 ~a~~RL~kEl~~l 16 (169)
T 1ayz_A 4 PARRRLMRDFKRM 16 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566777666654
No 62
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=57.26 E-value=15 Score=34.62 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=42.2
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCc
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~ 68 (523)
.+||-|. --|..|+..|-.+|.+.++|..|.+-...- .. .+-...+.++.|+++|.++++...
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~--~~-~~p~~~~g~~~L~~aGI~V~~~~~ 147 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLF--MW-EEPEIQAALKKLKEAGCKLRIMKP 147 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecC--Cc-CChHHHHHHHHHHHCCCEEEEecH
Confidence 4677788 569999999999999999987655421100 00 011124667788999998876543
No 63
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=56.34 E-value=10 Score=34.52 Aligned_cols=9 Identities=11% Similarity=0.280 Sum_probs=3.6
Q ss_pred cCCCEEEEE
Q 009870 36 SEQGKVTVS 44 (523)
Q Consensus 36 l~sgkVtV~ 44 (523)
+.+..+.|.
T Consensus 41 lgn~~f~V~ 49 (143)
T 1d7q_A 41 LGNGRLEAM 49 (143)
T ss_dssp CSSSEEEEE
T ss_pred cCCCEEEEE
Confidence 334444443
No 64
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=53.41 E-value=11 Score=31.76 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=38.3
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ecCCHHHHHHHHHHcCCceEEc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~vd~~eIikaI~kaGy~a~l~ 66 (523)
++|.+. +.|..-+-+++++|.+++- ...++|. .....+.|.+.+++.||.+...
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~~---------Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI 84 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCcchHHHHHHHHHHCCCEEEEE
Confidence 345555 8999999999999998732 1223333 2356778899999999987653
No 65
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=51.72 E-value=31 Score=33.04 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=38.0
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcCc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~~ 68 (523)
||.-|. --|..|+.+|.+-|.+.+.|. ++|-.+ ++--. +-...+-++.|.++|..+.+...
T Consensus 102 vTwy~SWSPC~~CA~~v~~FL~~~~~v~-L~If~a--RLY~~-~~~~~~gLr~L~~aG~~v~iM~~ 163 (203)
T 3v4k_A 102 VTCFTSWSPCFSCAQEMAKFISKNKHVS-LCIKTA--RIYDD-QGRCQEGLRTLAEAGAKISIMTY 163 (203)
T ss_pred EEEEEeCCChHHHHHHHHHHHhhCCCeE-EEEEEE--eeccc-CchHHHHHHHHHHCCCeEEecCH
Confidence 444555 459999999999999988772 222211 22111 23345566677788887776543
No 66
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.16 E-value=39 Score=29.54 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=43.2
Q ss_pred EEEEEe-ecCH-HHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCD-GCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~-~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~ka 59 (523)
++|.|. +... .+...|+.+++...-|..|++.....+..|+-....++..++|+++
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 467788 7666 7899999999999899999998888888888653255666666664
No 67
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=47.24 E-value=13 Score=33.79 Aligned_cols=7 Identities=14% Similarity=0.225 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 009870 137 LQHLQQI 143 (523)
Q Consensus 137 ~qq~qq~ 143 (523)
...|...
T Consensus 99 vk~L~k~ 105 (143)
T 1d7q_A 99 ARSLKAY 105 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444433
No 68
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=45.54 E-value=14 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcC--CCeeEEEEecCCC
Q 009870 13 DGCKHKVKKILQKI--DGVFTTSIDSEQG 39 (523)
Q Consensus 13 ~~Ca~kIEKaL~kl--~GV~sV~VDl~sg 39 (523)
..|-|-+|..+.+| +||.++.+-++.+
T Consensus 26 gGCFWg~E~~F~~l~g~GV~~t~~GYagG 54 (187)
T 3pim_A 26 CGCFWGTEHMYRKYLNDRIVDCKVGYANG 54 (187)
T ss_dssp SSCHHHHHHHHHHHHGGGSSEEEEEEEEE
T ss_pred cCCchhhHHHHHHhcCCCeEEEEeeecCC
Confidence 67888888889999 8999888876554
No 69
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=45.24 E-value=67 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=31.0
Q ss_pred EEEEe-ecCHHHHHHHH---HHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009870 5 VLKVN-IHCDGCKHKVK---KILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIE---KaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~ 67 (523)
.|.+- -.|..|...+. +...+++.|.-+.|+ .+.+.+++.+.+++.++...++.
T Consensus 28 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~~~~~~~~~~~~ 85 (136)
T 1lu4_A 28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIA---------TRADVGAMQSFVSKYNLNFTNLN 85 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEE---------CSSCHHHHHHHHHHHTCCSEEEE
T ss_pred EEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEE---------cCCCHHHHHHHHHHcCCCceEEE
Confidence 34444 78999976443 333333444333333 33457888888888777655443
No 70
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=43.84 E-value=1e+02 Score=23.93 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=34.0
Q ss_pred CeEEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE-ecCCHHHHHHHHH
Q 009870 1 MQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLA 57 (523)
Q Consensus 1 Mqkv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~-g~vd~~eIikaI~ 57 (523)
|.++.+.|.+....| ..+.++|++++.|.++-.-.-.--+.+. ...+.++|.+.|.
T Consensus 1 mv~A~v~v~~~~~~~-~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 1 MVTAFILMVTAAGKE-REVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CEEEEEEEEECTTCH-HHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHH
T ss_pred CEEEEEEEEEcCCCH-HHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHH
Confidence 344445555444444 6788999999999877554443334433 3346777766664
No 71
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=42.64 E-value=24 Score=31.87 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=14.1
Q ss_pred CCeeEEEEecC-CCEEEEEec
Q 009870 27 DGVFTTSIDSE-QGKVTVSGN 46 (523)
Q Consensus 27 ~GV~sV~VDl~-sgkVtV~g~ 46 (523)
++|..+.|++. ..+|+|...
T Consensus 23 ~~~~~v~V~~~~~~~l~~~~~ 43 (150)
T 2kmw_A 23 PDAKDISVKCEPQGLFSFSAL 43 (150)
T ss_dssp SSEEEEEECCCTTEEEEEEEE
T ss_pred CCCCceEEEEecCCEEEEEEE
Confidence 44667888888 677777643
No 72
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=42.20 E-value=88 Score=25.00 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=29.6
Q ss_pred EEEEe-ecCHHHHHHHH---HHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCC-ceEE
Q 009870 5 VLKVN-IHCDGCKHKVK---KILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK-HAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIE---KaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy-~a~l 65 (523)
.|.+- -.|..|...+. +...++..|.-+.| ..+.+.+++.+.+++.++ ...+
T Consensus 29 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~~~~~~~~~~~ 85 (136)
T 1zzo_A 29 VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGV---------AGLDQVPAMQEFVNKYPVKTFTQ 85 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEE---------ECSSCHHHHHHHHHHTTCTTSEE
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEE---------eCCCCHHHHHHHHHHcCCCceEE
Confidence 34444 78999976543 33333333433333 333457788888888877 4443
No 73
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=41.94 E-value=74 Score=25.89 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=31.0
Q ss_pred EEEEEe-ecCHHHHHHHH---HHHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEc
Q 009870 4 YVLKVN-IHCDGCKHKVK---KILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIE---KaL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~ 66 (523)
+.|.+- -.|..|...+. +..+++. +|.-+.|+... ...+.+++.+.+++.++...++
T Consensus 37 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------~~~~~~~~~~~~~~~~~~~~~~ 99 (145)
T 3erw_A 37 TILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN------SEQNQQVVEDFIKANKLTFPIV 99 (145)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG------GSSCHHHHHHHHHHTTCCSCEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC------CcCCHHHHHHHHHHcCCceeEE
Confidence 344444 78999977543 3333332 33333332211 1137888888888887765443
No 74
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=41.75 E-value=8.3 Score=38.69 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.8
Q ss_pred HHHcCC
Q 009870 56 LAKSGK 61 (523)
Q Consensus 56 I~kaGy 61 (523)
|..++.
T Consensus 46 L~qsgv 51 (286)
T 1rm1_C 46 LTETKV 51 (286)
T ss_dssp HHHHTS
T ss_pred HHhcCc
Confidence 444444
No 75
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=41.29 E-value=62 Score=26.96 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=28.2
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcCCC--eeEEEEecCCCEEEEEecCC-HHHHHHHHHHcCCceEEc
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKIDG--VFTTSIDSEQGKVTVSGNVD-PSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl~G--V~sV~VDl~sgkVtV~g~vd-~~eIikaI~kaGy~a~l~ 66 (523)
.|.+- -.|..|...+.. ...++.. |.-+. |..+.+ .+++.+.+++.++...++
T Consensus 32 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~---------v~~d~~~~~~~~~~~~~~~~~~~~~ 91 (154)
T 3kcm_A 32 IVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLC---------VSIDEGGKVAVEEFFRKTGFTLPVL 91 (154)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEE---------EECCTTHHHHHHHHHHHHCCCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEE---------EEcCCcchHHHHHHHHHcCCCeeEE
Confidence 34444 789999875433 3333322 22222 222223 667777777777665443
No 76
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=39.98 E-value=3.8 Score=39.71 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=4.0
Q ss_pred ccccceeec
Q 009870 80 NQFKNMQLD 88 (523)
Q Consensus 80 ~~~k~l~Id 88 (523)
..|+...|.
T Consensus 31 ~efql~q~~ 39 (221)
T 3hou_D 31 QEFQLKQIN 39 (221)
T ss_dssp GGGCSEEEC
T ss_pred cccceeecc
Confidence 344444453
No 77
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=39.58 E-value=1e+02 Score=26.19 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=31.5
Q ss_pred EEEEe-ecCHHHHHHHH---HHHhcCCCeeEEEEecCCCE----EEE-----EecCCHHHHHHHHHHcCC-ceEE
Q 009870 5 VLKVN-IHCDGCKHKVK---KILQKIDGVFTTSIDSEQGK----VTV-----SGNVDPSVLIKKLAKSGK-HAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIE---KaL~kl~GV~sV~VDl~sgk----VtV-----~g~vd~~eIikaI~kaGy-~a~l 65 (523)
.|.+- ..|..|...+. +...+..+|.-+.|+....+ +.+ ....+.+++.+.+++.++ ...+
T Consensus 41 lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T 3ha9_A 41 ILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM 115 (165)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred EEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence 33444 78999976553 33333344544444332100 000 001577888888888877 4443
No 78
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=37.52 E-value=1.4e+02 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=28.7
Q ss_pred EEEe-ecCHHHHHHHH---------HHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEc
Q 009870 6 LKVN-IHCDGCKHKVK---------KILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 6 LkVe-M~C~~Ca~kIE---------KaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~ 66 (523)
|.+- -.|..|...+. +.+.. .+|.-+.|+ .+.+.+.+.+.+++.++...++
T Consensus 32 l~F~a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~---------~d~~~~~~~~~~~~~~~~~~~~ 92 (142)
T 3ewl_A 32 LFFYDPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIY---------PDENREEWATKAVYMPQGWIVG 92 (142)
T ss_dssp EEECCSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEE---------CSSCHHHHHHHHTTSCTTCEEE
T ss_pred EEEECCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEE---------ecCCHHHHHHHHHHcCCCccee
Confidence 3344 68999988732 22221 234333332 2346777788888877765443
No 79
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=36.67 E-value=6.6 Score=35.63 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=7.1
Q ss_pred EEEEEecCCHHHHHHHH
Q 009870 40 KVTVSGNVDPSVLIKKL 56 (523)
Q Consensus 40 kVtV~g~vd~~eIikaI 56 (523)
.+-|.........++.|
T Consensus 32 ~iYV~skTpf~S~vkRi 48 (140)
T 3iab_B 32 TIFVKSTTPYVSALKRI 48 (140)
T ss_dssp EEECCSSCCHHHHHHHH
T ss_pred eEEEecCCchHHHHHHH
Confidence 44454444443333333
No 80
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=36.21 E-value=7.5 Score=39.25 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHH
Q 009870 47 VDPSVLIKKLAK 58 (523)
Q Consensus 47 vd~~eIikaI~k 58 (523)
.+.+.|++.|++
T Consensus 110 ~~~~~i~~~i~~ 121 (367)
T 3us3_A 110 FSADTLVEFLLD 121 (367)
T ss_dssp CSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 566777776653
No 81
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.66 E-value=95 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=40.6
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~ka 59 (523)
++|.|. |.-......|++.+++.--|..|.|... ..+.|+.. +.++..++|+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~-~~~~a~~Ai~~l 70 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFV-RKEDMTYAVRKL 70 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEES-SHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEEC-CHHHHHHHHHHH
Confidence 466777 7766678889999998888988888665 66666653 677777888764
No 82
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=35.13 E-value=8.8 Score=38.75 Aligned_cols=16 Identities=0% Similarity=0.081 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHcCCc
Q 009870 47 VDPSVLIKKLAKSGKH 62 (523)
Q Consensus 47 vd~~eIikaI~kaGy~ 62 (523)
.+.++|.+.|+..-+.
T Consensus 213 ~~~~~l~~fi~~~~~p 228 (367)
T 3us3_A 213 NSEEEIVNFVEEHRRS 228 (367)
T ss_dssp CCHHHHHHHHHHTCSC
T ss_pred CCHHHHHHHHHHcCcc
Confidence 4556666666655443
No 83
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=35.13 E-value=11 Score=29.83 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=36.9
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEe--cCCHHHHHHHHHHcCCceEE
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g--~vd~~eIikaI~kaGy~a~l 65 (523)
+|.+. +.|..-+-+++++|.+++- ...++|.. ..+.+.|.+.+++.||.+..
T Consensus 8 ~lD~rGl~CP~Pvl~~k~al~~l~~---------G~~L~V~~dd~~a~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 8 VIDARGSYCPGPLMELIKAYKQAKV---------GEVISVYSTDAGTKKDAPAWIQKSGQELVG 62 (78)
T ss_dssp CCCBSSCSSCTTHHHHHHHHTTSCT---------TCCEECCBSSSCHHHHHHHHHHHHTEEECC
T ss_pred EEECCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEE
Confidence 35555 8999999999999998732 12234432 24578899999999997643
No 84
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=35.09 E-value=67 Score=26.78 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=19.2
Q ss_pred EEEEEe-ecCHHHHHHH------HHHHhcCCCeeEEEEecC
Q 009870 4 YVLKVN-IHCDGCKHKV------KKILQKIDGVFTTSIDSE 37 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kI------EKaL~kl~GV~sV~VDl~ 37 (523)
+.|.+. -.|..|.... +++...+.+|.-+.|+..
T Consensus 34 vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~ 74 (134)
T 2fwh_A 34 VMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVT 74 (134)
T ss_dssp EEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECT
T ss_pred EEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCC
Confidence 344455 6899998744 333334455655555543
No 85
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=34.91 E-value=1.5e+02 Score=22.58 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=32.9
Q ss_pred eEEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE-ecCCHHHHHHHHH
Q 009870 2 QTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLA 57 (523)
Q Consensus 2 qkv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~-g~vd~~eIikaI~ 57 (523)
.++.+.|.+.-..+ ..+.++|.+++.|.++..-.-.--+.+. ...+.++|.+.|.
T Consensus 2 v~a~v~v~~~~~~~-~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 2 ASAIVLINTDAGGE-DEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CEEEEEEEESTTCH-HHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHH
T ss_pred eEEEEEEEEcCCCH-HHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHH
Confidence 34444444333333 6888999999999877654443344443 3346677766664
No 86
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=33.53 E-value=59 Score=27.07 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=29.4
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~ 67 (523)
.|.+- -.|..|...+.. ...++. +|.-+ .|..+.+.+++.+.+++.++...++.
T Consensus 32 ll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v---------~v~~d~~~~~~~~~~~~~~~~~~~~~ 91 (152)
T 3gl3_A 32 YLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVV---------AVNLDAKTGDAMKFLAQVPAEFTVAF 91 (152)
T ss_dssp EEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEE---------EEECCSSHHHHHHHHHHSCCCSEEEE
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEE---------EEECCCCHHHHHHHHHHcCCCCceeE
Confidence 33444 789999765533 222221 23222 22333457778888888877655443
No 87
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=33.43 E-value=64 Score=30.55 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE----ecC---CHHHHHHHHHHcCCceEEcCc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS----GNV---DPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~----g~v---d~~eIikaI~kaGy~a~l~~~ 68 (523)
||.-|. --|..|+.+|.+-|.+.+.|. ++|- ... ...+=++.|.++|..+.+...
T Consensus 88 VTwy~SwSPC~~CA~~va~FL~~~~~v~----------L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~iM~~ 150 (190)
T 3vow_A 88 VTWYTSWSPCPDCAGEVAEFLARHSNVN----------LTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDY 150 (190)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHCTTEE----------EEEEEEECTTTTSHHHHHHHHHHHHHTCEEEECCH
T ss_pred EEEEEeCCchHHHHHHHHHHHHhCCCeE----------EEEEEEecccccCchHHHHHHHHHHCCCcEEEeCh
Confidence 455566 569999999999999888772 2332 111 223445567788988777654
No 88
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=32.31 E-value=2.1e+02 Score=23.48 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=25.0
Q ss_pred ecCHHHHHHHHHHHh------cC--CCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCce
Q 009870 10 IHCDGCKHKVKKILQ------KI--DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 10 M~C~~Ca~kIEKaL~------kl--~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a 63 (523)
-.|..|...+....+ +. .+|.-+.|+ .+.+.+.+.+.|++..+..
T Consensus 41 ~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~---------~d~~~~~~~~~~~~~~~~~ 93 (142)
T 3eur_A 41 PGCHACAEMIEGLKASPVINGFTAAKKLKVLSIY---------PDEELDEWKKHRNDFAKEW 93 (142)
T ss_dssp SSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEE---------CSSCHHHHHHHGGGSCTTS
T ss_pred CCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEE---------cCCCHHHHHHHHHhccccc
Confidence 689999766433221 11 344333332 3345667777787777654
No 89
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=32.24 E-value=36 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEEEEe--ecCHHHHHHHHHHHhcCC
Q 009870 3 TYVLKVN--IHCDGCKHKVKKILQKID 27 (523)
Q Consensus 3 kv~LkVe--M~C~~Ca~kIEKaL~kl~ 27 (523)
.|+|.++ -.-..|+.+||.+|+.+.
T Consensus 22 ~Vsf~Ld~~~iP~~~IeKIE~lL~e~~ 48 (52)
T 3kz5_E 22 KMVLNLDRSRVPTECIEKIEAILKELE 48 (52)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHC
T ss_pred eEEEEeccccCCHHHHHHHHHHHHHHh
Confidence 3667776 467999999999998763
No 90
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=31.93 E-value=1.8e+02 Score=23.97 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=27.8
Q ss_pred EEEe-ecCHHHHHHHH---HHHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCce
Q 009870 6 LKVN-IHCDGCKHKVK---KILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 6 LkVe-M~C~~Ca~kIE---KaL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a 63 (523)
|.+- -.|..|...+. +..++.. +|.-+. |..+.+.+++.+.+++.++..
T Consensus 37 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~---------vs~d~~~~~~~~~~~~~~~~~ 91 (143)
T 4fo5_A 37 LNFWAAYDAESRARNVQLANEVNKFGPDKIAMCS---------ISMDEKESIFTETVKIDKLDL 91 (143)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEE---------EECCSCHHHHHHHHHHHTCCG
T ss_pred EEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEE---------EEccCCHHHHHHHHHHhCCCC
Confidence 3344 68999987753 3333332 232222 223345778888888877654
No 91
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=31.49 E-value=1.1e+02 Score=25.49 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=30.9
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~ 67 (523)
.|.+- -.|..|...+.. ..+++ +|.-+.|+.. ...+.+++.+.+++.++...++.
T Consensus 34 ll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d-------~~~~~~~~~~~~~~~~~~~~~~~ 92 (154)
T 3ia1_A 34 VIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISRE-------PRDTREVVLEYMKTYPRFIPLLA 92 (154)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECC-------TTCCHHHHHHHHTTCTTEEECBC
T ss_pred EEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCC-------CcccHHHHHHHHHHcCCCccccc
Confidence 34444 789999765433 22233 3333333221 13577888888888887655443
No 92
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.23 E-value=1.2e+02 Score=23.00 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=41.4
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. +........|++.+++.--|.+|.+....+.+.|+.. +.++..++|+.+
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~-~~~~A~~a~~~l 68 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA-TRQAAEVAAEKS 68 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEES-SHHHHHHHHHTT
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEEC-CHHHHHHHHHHh
Confidence 356677 7777778889999998888988888876666677654 667777777754
No 93
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=31.23 E-value=64 Score=28.12 Aligned_cols=19 Identities=5% Similarity=-0.008 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHcCCceEEc
Q 009870 48 DPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 48 d~~eIikaI~kaGy~a~l~ 66 (523)
+.+.+.+.+++.++...++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~ 128 (183)
T 3lwa_A 110 SRDIAQDFVTDNGLDYPSI 128 (183)
T ss_dssp CHHHHHHHHHHTTCCSCEE
T ss_pred CHHHHHHHHHHcCCCccEE
Confidence 5777888888887764443
No 94
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=30.07 E-value=1.4e+02 Score=24.70 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=27.9
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCC---CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceE
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKID---GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAE 64 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~---GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~ 64 (523)
.|.+- ..|..|...+. .|+++. .|.-+ .|..+.+.+.+.+.+++.++...
T Consensus 46 ll~f~~~~C~~C~~~~~-~l~~l~~~~~v~~v---------~v~~~~~~~~~~~~~~~~~~~~~ 99 (156)
T 1kng_A 46 LVNVWASWCVPCHDEAP-LLTELGKDKRFQLV---------GINYKDAADNARRFLGRYGNPFG 99 (156)
T ss_dssp EEEEECTTCHHHHHHHH-HHHHHTTCTTSEEE---------EEEESCCHHHHHHHHHHHCCCCS
T ss_pred EEEEEcccCHhHHHHHH-HHHHHHhcCCeEEE---------EEECCCCHHHHHHHHHHcCCCCc
Confidence 34444 78999976543 334331 13222 23333467777777887776543
No 95
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=29.87 E-value=1.3e+02 Score=25.15 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=27.5
Q ss_pred EEEEe-ecCHHHHHHHHHH---HhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEE
Q 009870 5 VLKVN-IHCDGCKHKVKKI---LQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKa---L~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l 65 (523)
.|.+- -.|..|...+... ..++. +|.-+.| ..+.+.+.+.+.+++.++...+
T Consensus 38 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v---------~~d~~~~~~~~~~~~~~~~~~~ 95 (165)
T 3or5_A 38 IVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGI---------AVNEQLPNVKNYMKTQGIIYPV 95 (165)
T ss_dssp EEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEE---------ECSCCHHHHHHHHHHHTCCSCE
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEE---------ECCCCHHHHHHHHHHcCCCCce
Confidence 34444 7899998655432 22222 2332222 2234567777777777765443
No 96
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.07 E-value=1.4e+02 Score=24.77 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCC
Q 009870 17 HKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK 61 (523)
Q Consensus 17 ~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy 61 (523)
..|+ .|.+..||.+++++..+++|+|.+ .+.+.+.++++.+-+
T Consensus 35 k~Ik-~I~e~tGv~~IdI~eddG~V~I~g-~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 35 SNIQ-QARKVPGVTAIELDEDTGTFRIYG-ESADAVKKARGFLEF 77 (91)
T ss_dssp HHHH-HHHTSTTEEEEEEETTTTEEEEEE-SSHHHHHHHHHHHSC
T ss_pred HHHH-HHHHHhCCeEEEEEcCCCEEEEEE-CCHHHHHHHHHHHHh
Confidence 3444 456667987688887678999887 367777777766544
No 97
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=28.54 E-value=1.2e+02 Score=24.56 Aligned_cols=57 Identities=14% Similarity=0.335 Sum_probs=29.4
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcCCC-eeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEE
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKIDG-VFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl~G-V~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l 65 (523)
.|.+- -.|..|...+.. ...++.. |.-+.|+..... ...+.+++.+.+++.++...+
T Consensus 33 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 94 (148)
T 2b5x_A 33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSE----DDLDPGKIKETAAEHDITQPI 94 (148)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCST----TTSSHHHHHHHHHHTTCCSCE
T ss_pred EEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCc----cccCHHHHHHHHHHcCCCcce
Confidence 34444 789999764432 2222222 333333222100 113678888888888775443
No 98
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=28.34 E-value=64 Score=27.09 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=30.1
Q ss_pred EEEEe-ecCHHHHHH-H---HHHHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceE
Q 009870 5 VLKVN-IHCDGCKHK-V---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAE 64 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~k-I---EKaL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~ 64 (523)
.|.+- -.|..|... + ++..+++. +|.-+.|+..... ....+.+++.+.+++.++...
T Consensus 32 lv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 95 (158)
T 3eyt_A 32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEH---HEAMTPISLKAFLHEYRIKFP 95 (158)
T ss_dssp EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC---GGGSCHHHHHHHHHHTTCCSC
T ss_pred EEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccc---cccCCHHHHHHHHHHcCCCce
Confidence 34444 789999874 3 22233332 4443333321000 002477888888888877644
No 99
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=28.27 E-value=1.5e+02 Score=23.98 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=39.5
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC--CC----EEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE--QG----KVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~--sg----kVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. |........|++.++..--|.+|.|-.. +. .+.|+. .+.++..++|+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 77 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF-FNKWDAENAIQQM 77 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE-SSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEE-CCHHHHHHHHHHh
Confidence 567788 8888888899999999888988888644 22 233443 4677777778754
No 100
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.24 E-value=1.7e+02 Score=23.04 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=39.1
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC----CCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE----QGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~----sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.++..--|.+|.|... ...+.|+. .+.++..++|+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f-~~~~~a~~A~~~ 74 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF-ENSADADRAREK 74 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEE-SCHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEE-CCHHHHHHHHHH
Confidence 467777 8777778889999999988988888654 33455554 366667777765
No 101
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=28.06 E-value=2.1e+02 Score=23.74 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=29.8
Q ss_pred EEEEe-ecCHHHHHH-H---HHHHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEE
Q 009870 5 VLKVN-IHCDGCKHK-V---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~k-I---EKaL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l 65 (523)
.|.+- -.|..|... + ++...++. +|.-+.|+..... ....+.+++.+.+++.++...+
T Consensus 34 lv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T 3lor_A 34 VVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEH---HDVMTPEALKVFIDEFGIKFPV 98 (160)
T ss_dssp EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC---GGGSCHHHHHHHHHHTTCCSCE
T ss_pred EEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccc---cccCCHHHHHHHHHHcCCCCcE
Confidence 34444 689999873 3 33333332 2433333221000 0124778888888888766443
No 102
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=27.97 E-value=1.6e+02 Score=23.09 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=38.2
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.+++.--|.+|++....+-+.|+.. +.++..++|+.
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~-~~~~A~~Ai~~ 82 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYD-THEQAAVCIVA 82 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECS-SHHHHHHHHHH
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEEC-CHHHHHHHHHH
Confidence 356677 7666667888888888878888888766666666643 55566666654
No 103
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.92 E-value=2e+02 Score=22.38 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=38.9
Q ss_pred EEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCC------CEEEEEecCCHHHHHHHHHHc
Q 009870 3 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ------GKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 3 kv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~s------gkVtV~g~vd~~eIikaI~ka 59 (523)
..+|.|. |........|++.++..--|.+|.|-... ..+.|+. .+.++..++|+.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 70 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF-MFPEHAVKAYAEV 70 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEE-SSHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEE-CCHHHHHHHHHHh
Confidence 3567777 87777788899999998888888875432 3455554 3566677777553
No 104
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=27.79 E-value=2.8e+02 Score=23.54 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=40.0
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCC-CeeEEEEecCCC--EEEEEecCCHHHHHHHHHHcCCceE
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKID-GVFTTSIDSEQG--KVTVSGNVDPSVLIKKLAKSGKHAE 64 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~-GV~sV~VDl~sg--kVtV~g~vd~~eIikaI~kaGy~a~ 64 (523)
|.+++|.|. -.-.....+|-++|.+.. -|..+.++.... .++++ ..+++.+.+.|++.||.+.
T Consensus 4 m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~-~~d~~~a~~~L~~~G~~v~ 70 (144)
T 2f06_A 4 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI-VSDPDKAYKALKDNHFAVN 70 (144)
T ss_dssp SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHTTCCEE
T ss_pred cEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE-eCCHHHHHHHHHHcCCeEe
Confidence 345666666 455677788888876542 344555543322 23344 4578888999999998764
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.67 E-value=2.1e+02 Score=21.98 Aligned_cols=52 Identities=10% Similarity=0.154 Sum_probs=38.3
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. +........|++.++..--|.+|.+. ...+.|+.. +.++..++|+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~-~~~~A~~A~~~ 61 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIE-DKTAAEDAIRN 61 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEES-SHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEEC-CHHHHHHHHHH
Confidence 467777 87777788899999999888888876 455666643 56666666654
No 106
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=27.62 E-value=1.7e+02 Score=21.92 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=37.6
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC--CC----EEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE--QG----KVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~--sg----kVtV~g~vd~~eIikaI~ka 59 (523)
++|.|. +........|++.++..--|.++.+-.. +. -+.|+. .+.++..++|+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f-~~~~~a~~a~~~l 63 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF-TSQDDAQNAMDSM 63 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEE-SCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEE-CCHHHHHHHHHHh
Confidence 567777 7776678889999999888888877544 22 233443 4677777777753
No 107
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=27.58 E-value=63 Score=26.27 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=41.1
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE---ecCCHHHHHHHHHHcCCceEEcCccc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS---GNVDPSVLIKKLAKSGKHAELWGAQK 70 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~---g~vd~~eIikaI~kaGy~a~l~~~~~ 70 (523)
++|+|+ --.-..+..+++.|...+....|.+|+.. |... +...+.++++.+++.|.++.++...+
T Consensus 18 ~v~~l~G~L~f~~a~~~~~~l~~~~~~~~vvlDls~--v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 86 (99)
T 3oiz_A 18 RIYRVEGQLFYASVEDFMAAFDFREALDRVVIDVSR--AHIWDISSVQALDMAVLKFRREGAEVRIVGMNE 86 (99)
T ss_dssp EEEEEEEEECGGGHHHHHHTCCTTSCCSEEEEEEEE--EEECSHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEehhhHHHHHHHHhhcCCCCEEEEECCC--CCccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 567777 44555677787777655566666666652 3332 11345667777788898888876543
No 108
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.23 E-value=1.4e+02 Score=23.47 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=37.3
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
+|.|. |....-...|++.+++.--|.+|++......+.|+.. +.++..++|+.
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~-~~~~A~~A~~~ 72 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYE-SLDAAQAACAK 72 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEES-SHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEEC-CHHHHHHHHHH
Confidence 45566 6666667888999999888888888765555666643 56666667764
No 109
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=27.19 E-value=47 Score=26.38 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=20.1
Q ss_pred CeEEEEEEeecCHHHH-----HHHHHHHhcCCCee
Q 009870 1 MQTYVLKVNIHCDGCK-----HKVKKILQKIDGVF 30 (523)
Q Consensus 1 Mqkv~LkVeM~C~~Ca-----~kIEKaL~kl~GV~ 30 (523)
|.+++|-..-.|..|. .++++.|.+. +|.
T Consensus 1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~-~i~ 34 (93)
T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGK-RIQ 34 (93)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCCEEEEEcCCCCCchhhHHHHHHHHHHHHC-CCc
Confidence 4555555557899997 7888888764 453
No 110
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=27.11 E-value=1.6e+02 Score=24.23 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=38.4
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC------CCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE------QGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~------sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.++..--|.+|.|-.. ...+.|+. .+.++..++|+.
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~ 83 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY-ETYKEAQAAMEG 83 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEE-SSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEE-CCHHHHHHHHHH
Confidence 467788 8777778889999999888888887544 33445554 366666777764
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.10 E-value=1.4e+02 Score=23.93 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=39.9
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.++..--|.+|++.....-+.|+.. +.++..++|+.
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~-~~~~a~~A~~~ 80 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFS-THESAAHAIVS 80 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEES-SHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEC-CHHHHHHHHHH
Confidence 456677 7766677888999998888999988877676677653 56666667754
No 112
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.89 E-value=1.7e+02 Score=23.46 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=38.1
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCC---EEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQG---KVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sg---kVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. |........|++.++..--|.+|.|..... .+.|+. .+.++..++|+.+
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f-~~~~~A~~A~~~l 81 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEF-EDPRDAEDAVYGR 81 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEE-SCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEE-CCHHHHHHHHHHc
Confidence 356677 777667888999999988898888854432 444554 3666777777543
No 113
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=25.91 E-value=81 Score=26.54 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCee--EEEEecCCCEEEEEe---c-CCHHHHHHHHHHcCCceEEcCc
Q 009870 17 HKVKKILQKIDGVF--TTSIDSEQGKVTVSG---N-VDPSVLIKKLAKSGKHAELWGA 68 (523)
Q Consensus 17 ~kIEKaL~kl~GV~--sV~VDl~sgkVtV~g---~-vd~~eIikaI~kaGy~a~l~~~ 68 (523)
..+..+|..+++|. +++.|....++.|.. + ...+.+...|++ +|.+++-..
T Consensus 15 ~~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~~-gf~Ve~Gs~ 71 (95)
T 2w7v_A 15 AALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAE-KFNVEQGQL 71 (95)
T ss_dssp GGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHT-TEEEEECCC
T ss_pred HHHHHHhccCCCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhhc-CcEEehhhh
Confidence 34567788888875 566666788888762 2 346777777865 998887554
No 114
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=25.53 E-value=2.5e+02 Score=22.64 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=30.2
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcC---CCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKI---DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 67 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl---~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~~ 67 (523)
.|.+- -.|..|...+.. ...++ .+|.-+. |..+.+.+++.+.+++.++...++.
T Consensus 37 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~---------v~~d~~~~~~~~~~~~~~~~~~~~~ 97 (148)
T 3fkf_A 37 LLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLG---------ISLDIDREAWETAIKKDTLSWDQVC 97 (148)
T ss_dssp EEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEE---------EECCSCHHHHHHHHHHTTCCSEEEC
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEE---------EECCCCHHHHHHHHHHcCCCceEEE
Confidence 34444 789999766543 22222 1232222 2233456788888888887655543
No 115
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=25.49 E-value=3e+02 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.452 Sum_probs=19.2
Q ss_pred CeEEEEEEe-ecCHHHHHHHHHHHhcCCCee
Q 009870 1 MQTYVLKVN-IHCDGCKHKVKKILQKIDGVF 30 (523)
Q Consensus 1 Mqkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~ 30 (523)
|+++.+-+- --|.-|+ .+.++|.+|+.-.
T Consensus 1 mK~tLILfGKP~C~vCe-~~s~~l~~ledeY 30 (124)
T 2g2q_A 1 MKNVLIIFGKPYCSICE-NVSDAVEELKSEY 30 (124)
T ss_dssp CCEEEEEEECTTCHHHH-HHHHHHHTTTTTE
T ss_pred CCceEEEeCCCccHHHH-HHHHHHHHhhccc
Confidence 344445555 7899997 5667778887643
No 116
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=25.37 E-value=2.1e+02 Score=26.00 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=25.9
Q ss_pred EEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCC
Q 009870 3 TYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQ 38 (523)
Q Consensus 3 kv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~s 38 (523)
+++|.|+ .+..-...|.+.|.++..|.+|.-....
T Consensus 46 riti~V~-~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 46 RMTIQTV-GDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred EEEEEEe-ccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 3455555 5677888999999999999988654433
No 117
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.34 E-value=2.3e+02 Score=21.75 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=38.2
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCC------CEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ------GKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~s------gkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.+++.--|.+|.+-... ..+.|+. .+.++..++|+.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~ 66 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRALEQ 66 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEE-SCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEE-CCHHHHHHHHHH
Confidence 356677 77777788899999999889888886542 2445554 356667777764
No 118
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.28 E-value=2e+02 Score=23.46 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=39.9
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. +....-...|++.+++.--|.+|.+......+.|+.. +.++..++|+.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~-~~~~A~~Ai~~ 65 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFL-EPLEARKAFRH 65 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEES-CHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeC-CHHHHHHHHHH
Confidence 467787 8777777889999999888988888766666667753 55666666664
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.18 E-value=1.3e+02 Score=23.71 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=38.9
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
+|.|. +.-......|++.+++.-.|.+|.+.....-+.|+.. +.++..++|+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~-~~~~a~~a~~~ 70 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE-TRTLAEIAKVE 70 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECS-SSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEEC-CHHHHHHHHHH
Confidence 56677 7666667889999998888999998877777777753 45555666654
No 120
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=25.10 E-value=1.2e+02 Score=26.62 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=32.3
Q ss_pred eEEEEEEe--ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ec-CCHHHHHHHHHH
Q 009870 2 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GN-VDPSVLIKKLAK 58 (523)
Q Consensus 2 qkv~LkVe--M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~-vd~~eIikaI~k 58 (523)
.++.|+|. .---.....+.+...++ +|.=..-|+..++|+|+ ++ ..++++++.|++
T Consensus 34 ~t~~frV~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 34 TTLCYRVTGKVQGVFFRKYTKKEADAL-SLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEEEEEeeCCcCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 45677887 33333333333333332 46666677888877766 32 456777777764
No 121
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=24.78 E-value=1.8e+02 Score=25.19 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=29.2
Q ss_pred EEEEe-ecCHHHHHH---HHHHHhcCCC-eeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEc
Q 009870 5 VLKVN-IHCDGCKHK---VKKILQKIDG-VFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~k---IEKaL~kl~G-V~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~ 66 (523)
.|.+- -.|..|... +++...++.. |.-+.|+...... ....+.+++.+.+++.++...++
T Consensus 37 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~--~~~d~~~~~~~~~~~~~~~~~~~ 101 (188)
T 2cvb_A 37 AVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEK--YPEDAPEKMAAFAEEHGIFFPYL 101 (188)
T ss_dssp EEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTT--CGGGSHHHHHHHHHHHTCCSCEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCcccc--ccccCHHHHHHHHHHhCCCceEE
Confidence 33444 789999753 3444444433 3222222110000 00136778888888877654433
No 122
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.78 E-value=1.6e+02 Score=23.32 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=38.2
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC-------CCEEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-------QGKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~-------sgkVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. |....-...|++.++..--|.+|.|-.. ...+.|+. .+.++..++|+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 78 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF-ITKQDAKKAFNAL 78 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEE-SSHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEE-CCHHHHHHHHHHh
Confidence 356677 7666667889999999888988888544 33455554 3666777777765
No 123
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=24.66 E-value=1.3e+02 Score=22.90 Aligned_cols=11 Identities=36% Similarity=0.455 Sum_probs=4.9
Q ss_pred HHHHHHHHHHc
Q 009870 49 PSVLIKKLAKS 59 (523)
Q Consensus 49 ~~eIikaI~ka 59 (523)
.++|+++|+++
T Consensus 59 l~~l~~~L~~~ 69 (88)
T 2ko1_A 59 LTTLMDKLRKV 69 (88)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 34444444443
No 124
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=24.32 E-value=93 Score=25.98 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=17.4
Q ss_pred EEEEEEeecCHHH--HHHHHHHHhcC
Q 009870 3 TYVLKVNIHCDGC--KHKVKKILQKI 26 (523)
Q Consensus 3 kv~LkVeM~C~~C--a~kIEKaL~kl 26 (523)
+++..|+++|..+ +.+|+++|.+.
T Consensus 5 kIra~iel~c~~~dGIe~IK~AL~~a 30 (93)
T 2qn6_B 5 KMSGLITVRTNEPLGVEKIKEVISKA 30 (93)
T ss_dssp EEEEEEEEEECCTTTHHHHHHHHHHH
T ss_pred EEEEEEEEEeCCCchHHHHHHHHHHH
Confidence 3455566889666 89999999643
No 125
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=24.04 E-value=2e+02 Score=22.75 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC-CC----EEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-QG----KVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~-sg----kVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. |........|++.++..--|.+|.|-.. +. .+.|+. .+.++..++|+.+
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f-~~~~~a~~A~~~l 90 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF-ERKADALKAMKQY 90 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEE-SSHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEE-CCHHHHHHHHHHh
Confidence 467777 8777778889999999888888877643 22 233443 4677777777753
No 126
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=23.92 E-value=1.3e+02 Score=26.30 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=28.8
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcC--CCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceE
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKI--DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAE 64 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl--~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~ 64 (523)
.|.+- -.|..|...+... .++ .+|.-+. |..+.+.+++.+.+++.++...
T Consensus 62 ll~F~a~~C~~C~~~~~~l-~~l~~~~v~vv~---------vs~~d~~~~~~~~~~~~~~~~~ 114 (176)
T 3kh7_A 62 LVNVWGTWCPSCRVEHPEL-TRLAEQGVVIYG---------INYKDDNAAAIKWLNELHNPYL 114 (176)
T ss_dssp EEEEECTTCHHHHHHHHHH-HHHHHTTCEEEE---------EEESCCHHHHHHHHHHTTCCCS
T ss_pred EEEEECCcCHHHHHHHHHH-HHHHHCCCEEEE---------EeCCCCHHHHHHHHHHcCCCCc
Confidence 34444 7899997765432 222 1343322 3334577888888888776543
No 127
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=23.86 E-value=2.2e+02 Score=22.06 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEe-ecCHHHHH---HHHHHHhcCCCeeEEEEecC
Q 009870 4 YVLKVN-IHCDGCKH---KVKKILQKIDGVFTTSIDSE 37 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~---kIEKaL~kl~GV~sV~VDl~ 37 (523)
+.+.+. -.|..|.. .++++..+.+.|.-+.||..
T Consensus 21 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~ 58 (105)
T 4euy_A 21 VLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQ 58 (105)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEEC
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECC
Confidence 344445 67999975 33454455555655555543
No 128
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=23.78 E-value=1.7e+02 Score=24.25 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred eEEEEEEe--ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ec-CCHHHHHHHHHHcC
Q 009870 2 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GN-VDPSVLIKKLAKSG 60 (523)
Q Consensus 2 qkv~LkVe--M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~-vd~~eIikaI~kaG 60 (523)
.+++|.|. ...-.....+.+...++ +|.-..-|+..++|+|. ++ ..++++++.|++.+
T Consensus 8 ~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~ 70 (99)
T 2vh7_A 8 ISVDYEIFGKVQGVFFRKHTQAEGKKL-GLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRG 70 (99)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHT-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEEEEEEEeeCCcChHHHHHHHHHHc-CCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC
Confidence 45666777 45555555555554444 56666667888877765 33 35677888887554
No 129
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=23.64 E-value=71 Score=27.08 Aligned_cols=34 Identities=9% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEEe-ecCHHHHHHH---HHHHhcCC--CeeEEEEecC
Q 009870 4 YVLKVN-IHCDGCKHKV---KKILQKID--GVFTTSIDSE 37 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kI---EKaL~kl~--GV~sV~VDl~ 37 (523)
+.|.+- -.|..|...+ ++...++. +|.-+.|+..
T Consensus 44 vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d 83 (158)
T 3hdc_A 44 VLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVE 83 (158)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECS
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCC
Confidence 334444 7899997644 33333443 4554445443
No 130
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=23.46 E-value=1e+02 Score=25.44 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=37.7
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~ka 59 (523)
++|.|. |.-......|++.++..--|..|.|... ..+.|+.. +.++..++|+.+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~-~~~~a~~Ai~~l 71 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFV-RKEDMTYAVRKL 71 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEES-SHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEEC-CHHHHHHHHHHh
Confidence 345666 6666667888899998878888888654 56666653 567777777743
No 131
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=23.07 E-value=23 Score=33.56 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=33.0
Q ss_pred EEEEEe---ecCHHHHHHHHHHHh----cCCCeeEEEEecCCCEEEEEe---cC-CHHHHHHHHHHc
Q 009870 4 YVLKVN---IHCDGCKHKVKKILQ----KIDGVFTTSIDSEQGKVTVSG---NV-DPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe---M~C~~Ca~kIEKaL~----kl~GV~sV~VDl~sgkVtV~g---~v-d~~eIikaI~ka 59 (523)
++|.|+ +.-..+...|...|. +.+...-+-||.....++... .+ +.+.|...+.+.
T Consensus 22 ivlQiD~~Kl~~~~~~~~i~NslkAL~~Kf~~~k~C~VD~~g~V~~~~~~~~~i~~~~~l~~~~~~~ 88 (196)
T 3fze_A 22 IILQIDFTKLKEEDSLIVVYNSLKALTIKFARLQFCFVDRNNYVLDYGSVLHKIDSLDSISNLKSKS 88 (196)
T ss_dssp EEEEECGGGCCSTHHHHHHHHHHHHHHHHCTTCEEEEEETTSBEEEEEEHHHHCCSHHHHHGGGGCC
T ss_pred EEEEecHHHhccCCcEEeehHHHHHHHhccCcceEEEEeCCCCEEEeehHHhhhhhhhhhhhhhccc
Confidence 456666 444666655555444 457777788888877666542 12 555555555443
No 132
>3k8g_A 30KLP; outmer membrane protein, membrane protei; 1.95A {Treponema pallidum} PDB: 3k8h_A 3k8i_A 3k8j_A
Probab=22.26 E-value=42 Score=33.00 Aligned_cols=53 Identities=13% Similarity=0.339 Sum_probs=33.1
Q ss_pred EEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEE-ecCCHHHHHHHHHHc
Q 009870 4 YVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~-g~vd~~eIikaI~ka 59 (523)
+.|.|+..-...+-.|+-.|.+ |...+|..+..+|+|+ .+++.++|++.|+..
T Consensus 202 yslSie~~n~rsa~~ir~Ll~r---~l~~~i~~~g~~~~iE~~~i~~~~l~~li~~l 255 (262)
T 3k8g_A 202 YTLSLQLGNAKINFPIQFLISR---VLNAHIHVEGDRLIIEDGTISAERLASVISSL 255 (262)
T ss_dssp EEEEEECTTCCCCHHHHHHHHH---HHTCEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred EEEEEEeccchHHHHHHHHHHH---HhcceEeeecceEEEecCCcCHHHHHHHHHHH
Confidence 4566663333333444444443 2334566778899998 678999999888643
No 133
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=22.00 E-value=3.5e+02 Score=22.93 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=32.9
Q ss_pred EEEe-ecCHHHHHHHHHHHhcCC-CeeEEEEecCCCEEEEE-ecCCHHHHHHHHHHcCCce
Q 009870 6 LKVN-IHCDGCKHKVKKILQKID-GVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 6 LkVe-M~C~~Ca~kIEKaL~kl~-GV~sV~VDl~sgkVtV~-g~vd~~eIikaI~kaGy~a 63 (523)
+-|. -+......+|-++|.+.. -|..+.+..+..+++|. ...+.++++++|+++||++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~~g~~v 135 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDL 135 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHHcCCEE
Confidence 3344 466777888888876542 12121111023333332 3347888888888888876
No 134
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=22.00 E-value=2.4e+02 Score=23.09 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=37.8
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC-----CCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-----QGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~-----sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. +........|++.+++.--|.+|.|-.. .+.+.|+. .+.++..++|+.
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f-~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF-ERRADALKAMKQ 95 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEE-SSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEE-CCHHHHHHHHHH
Confidence 567777 7777778889999999878888887653 33455554 356666667764
No 135
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=21.85 E-value=95 Score=25.84 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=27.8
Q ss_pred EEEEe-ecCHHHHHHHHHH---HhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEE
Q 009870 5 VLKVN-IHCDGCKHKVKKI---LQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKa---L~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l 65 (523)
.|.+- -.|..|...+... ..++. +|.-+. |..+.+.+++.+.+++.++...+
T Consensus 30 lv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~---------v~~d~~~~~~~~~~~~~~~~~~~ 87 (151)
T 2f9s_A 30 FLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA---------VNVGESKIAVHNFMKSYGVNFPV 87 (151)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEE---------EEESCCHHHHHHHHHHHTCCSCE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEE---------EECCCCHHHHHHHHHHcCCCceE
Confidence 34444 7899997655432 22221 233222 22334567777778877765443
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=21.66 E-value=2.6e+02 Score=22.95 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=39.4
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCC-----CEEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ-----GKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~s-----gkVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. |........|++.++..--|.+|.|-... .-+.|+. .+.++..++|+.+
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F-~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITF-ENPADAKNAAKDM 68 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEEC-SSHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEE-CCHHHHHHHHHHh
Confidence 456777 77777788899999999889888886543 3445554 3667777777653
No 137
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=21.58 E-value=2.1e+02 Score=21.57 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=38.6
Q ss_pred eEEEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC-------CCEEEEEecCCHHHHHHHHHH
Q 009870 2 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-------QGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 2 qkv~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~-------sgkVtV~g~vd~~eIikaI~k 58 (523)
+..+|.|. +........|++.++..--|.++.+-.. .+.+.|+. .+.++..++|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEF-ENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEE-SSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEE-ecHHHHHHHHHH
Confidence 34567787 8777778889999999888888877432 23344443 366677777775
No 138
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=21.53 E-value=2.5e+02 Score=25.64 Aligned_cols=34 Identities=24% Similarity=0.099 Sum_probs=25.4
Q ss_pred EEEEEEeecCHHHHHHHHHHHhcCCCeeEEEEecC
Q 009870 3 TYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSE 37 (523)
Q Consensus 3 kv~LkVeM~C~~Ca~kIEKaL~kl~GV~sV~VDl~ 37 (523)
+++|.|+ .+......|.+.|.++..|.+|..-..
T Consensus 47 ritivV~-~d~~~leql~kQL~Kl~dV~~V~~~~~ 80 (165)
T 2pc6_A 47 RMTLVTN-GPDEIVEQITKQLNKLIEVVKLIDLSS 80 (165)
T ss_dssp EEEEEEE-ECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred EEEEEEe-ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 3445555 567888899999999999998875433
No 139
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=21.52 E-value=3.8e+02 Score=22.84 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=25.6
Q ss_pred ecCHHHHHHHHHHHh---cCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCC-ceEEc
Q 009870 10 IHCDGCKHKVKKILQ---KIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK-HAELW 66 (523)
Q Consensus 10 M~C~~Ca~kIEKaL~---kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy-~a~l~ 66 (523)
..|..|...+...-+ ++.+|.-|. |.. -+++.+.+.+++.++ ...++
T Consensus 58 ~~C~~C~~~~~~l~~~~~~~~~v~vv~---------Is~-d~~~~~~~~~~~~~~~~~~~l 108 (171)
T 2yzh_A 58 LDTPVCETETKKFNEIMAGMEGVDVTV---------VSM-DLPFAQKRFCESFNIQNVTVA 108 (171)
T ss_dssp TTSHHHHHHHHHHHHHTTTCTTEEEEE---------EES-SCHHHHHHHHHHTTCCSSEEE
T ss_pred CCCCchHHHHHHHHHHHHHcCCceEEE---------EeC-CCHHHHHHHHHHcCCCCeEEe
Confidence 479999887655322 222332222 222 256667777887776 44443
No 140
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=21.50 E-value=2.1e+02 Score=22.49 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=37.1
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCC-----CEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ-----GKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~s-----gkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.++..--|.+|.|-... .-+.|+. .+.++..++|+.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f-~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKF-SSHTEAQAAIHA 75 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEE-SSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEe-CCHHHHHHHHHH
Confidence 456777 77777788899999998889888876442 2233443 466677777764
No 141
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=21.46 E-value=1.4e+02 Score=22.56 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=18.8
Q ss_pred CeEEEEEEeecCHHHHHH----HHHHHhcCCCeeEEEEecCCCEEEEEe
Q 009870 1 MQTYVLKVNIHCDGCKHK----VKKILQKIDGVFTTSIDSEQGKVTVSG 45 (523)
Q Consensus 1 Mqkv~LkVeM~C~~Ca~k----IEKaL~kl~GV~sV~VDl~sgkVtV~g 45 (523)
|+++++.|.......+.+ +-+++..+ |...+.|.....+|+|++
T Consensus 1 mervrisitartkkeaekfaailikvfael-gyndinvtwdgdtvtveg 48 (62)
T 2gjh_A 1 MERVRISITARTKKEAEKFAAILIKVFAEL-GYNDINVTWDGDTVTVEG 48 (62)
T ss_dssp -CEEEEEEECSSHHHHHHHHHHHHHHHHHT-TCCSCEEEECSSCEEEEE
T ss_pred CceEEEEEEecchhHHHHHHHHHHHHHHHh-CcccceeEEcCCEEEEEe
Confidence 445555555323333333 23333332 333444444555666664
No 142
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=21.39 E-value=1.2e+02 Score=25.33 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCEEEEE--ecCCHHHHHHHHHHc
Q 009870 14 GCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKS 59 (523)
Q Consensus 14 ~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~--g~vd~~eIikaI~ka 59 (523)
.|.-.+++ |-.++||.+|-+. ..-|+|+ ..++.+.|...|..+
T Consensus 37 ~~SPLA~~-LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~I~~~ 81 (94)
T 2k1h_A 37 GQPEFINR-LFEIEGVKSIFYV--LDFISIDKEDNANWNELLPQIENT 81 (94)
T ss_dssp TSCHHHHH-HHTSTTEEEEEEE--TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred cCCHHHHH-hhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHHHH
Confidence 44444444 5589999887775 4467787 347888888777643
No 143
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=21.37 E-value=21 Score=35.54 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 009870 49 PSVLIKKL 56 (523)
Q Consensus 49 ~~eIikaI 56 (523)
...|++.|
T Consensus 85 ~~~l~~~l 92 (288)
T 3nzj_F 85 GRHLVNRG 92 (288)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 144
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=21.26 E-value=83 Score=26.91 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=29.4
Q ss_pred ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCC-ce
Q 009870 10 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK-HA 63 (523)
Q Consensus 10 M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy-~a 63 (523)
-.|..|.... +.|.. .+|.-..+|+.. ...+.++|.+.++++|. .+
T Consensus 13 p~C~~c~ka~-~~L~~-~gi~~~~~di~~------~~~~~~eL~~~l~~~g~~~~ 59 (121)
T 3rdw_A 13 PRCSKSRETL-ALVEQ-QGITPQVVLYLE------TPPSVDKLKELLQQLGFSDA 59 (121)
T ss_dssp TTCHHHHHHH-HHHHT-TTCCCEEECTTT------SCCCHHHHHHHHHHTTCSSG
T ss_pred CCCHHHHHHH-HHHHH-cCCCcEEEeecc------CCCcHHHHHHHHHhcCCcCH
Confidence 6899998554 44443 455332333332 23688999999999987 54
No 145
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=21.25 E-value=2.1e+02 Score=23.59 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=28.9
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEc
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~ 66 (523)
.|.+- -.|..|...+.. ...++. +|.-+.|+.. ..+.+++.+.+++.++...++
T Consensus 32 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~--------~~~~~~~~~~~~~~~~~~~~~ 91 (153)
T 2l5o_A 32 LINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQP--------IDPIESVRQYVKDYGLPFTVM 91 (153)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECT--------TSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecC--------CCCHHHHHHHHHHcCCCceEE
Confidence 33344 789999765433 222222 2332222211 235677788888887765543
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=20.99 E-value=20 Score=31.71 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccCccCCCCCCCCC
Q 009870 185 SDDEFDYDDEYDDEYDDDLDEPLP 208 (523)
Q Consensus 185 dddd~DddddddDd~ddd~dd~~~ 208 (523)
|--|+++|+|||||+|.|+....+
T Consensus 3 d~~d~~~~ee~e~~~d~e~~~~~~ 26 (165)
T 1rk8_A 3 DVLDIDNAEEFEVDEDGDQGIVRL 26 (165)
T ss_dssp ------------------------
T ss_pred cccccccchhhhccccccccchhh
No 147
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=20.93 E-value=2.6e+02 Score=23.17 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=27.8
Q ss_pred EEEEe-ecCHHHHHHHHH---HHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCceEEc
Q 009870 5 VLKVN-IHCDGCKHKVKK---ILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 66 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEK---aL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a~l~ 66 (523)
.|.+- -.|..|...+.. ...++. +|.-+.| ..+.+.+++.+.+++.++...++
T Consensus 33 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v---------~~d~~~~~~~~~~~~~~~~~~~~ 91 (152)
T 2lrn_A 33 LVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGV---------STDRREEDWKKAIEEDKSYWNQV 91 (152)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEE---------ECCSCHHHHHHHHHHHTCCSEEE
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEE---------EccCCHHHHHHHHHHhCCCCeEE
Confidence 33344 689999765432 222222 2332222 22345677777777776654443
No 148
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=20.93 E-value=2.7e+02 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=16.5
Q ss_pred EEEEEEeecCHHH--HHHHHHHHhc
Q 009870 3 TYVLKVNIHCDGC--KHKVKKILQK 25 (523)
Q Consensus 3 kv~LkVeM~C~~C--a~kIEKaL~k 25 (523)
+++-.|+++|..+ +..|+++|.+
T Consensus 90 kIra~ieltc~~~dGIe~IK~AL~~ 114 (188)
T 1yz7_A 90 TIDAEFEITVPKPNGVEIIKEALIR 114 (188)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEEEEEEeCCCchHHHHHHHHHH
Confidence 3455566899776 8888888853
No 149
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=20.91 E-value=33 Score=34.27 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCcccCccCCCCCCC
Q 009870 176 NIPDDDEDFSDDEFDYDDEYDDEYDDDLDEP 206 (523)
Q Consensus 176 ~~~~dddd~dddd~DddddddDd~ddd~dd~ 206 (523)
...++.++++++|+|||||++||++++..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (339)
T 1sig_A 71 HVGSELSQEDLDDDEDEDEEDGDDDSADDDN 101 (339)
T ss_dssp TTTCCSCTTTTC-------------------
T ss_pred ccccccccccccccccccccccccccccccc
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.86 E-value=2.9e+02 Score=22.57 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=39.3
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |.+......|++.++..-.|.+|.+....+-+.|+.. +.++..++|+.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~-~~~~A~~Ai~~ 70 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE-NIDSAKECVTF 70 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEES-SHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEEC-CHHHHHHHHHH
Confidence 357777 8877778889999999888999888766666677753 45555555553
No 151
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=20.61 E-value=3.4e+02 Score=22.13 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=25.8
Q ss_pred EEEEe-ecCHHHHHHH---HHHHhcCC--CeeEEEEecCCCEEEEEecCCHHHHHHHHHHcCCce
Q 009870 5 VLKVN-IHCDGCKHKV---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 63 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kI---EKaL~kl~--GV~sV~VDl~sgkVtV~g~vd~~eIikaI~kaGy~a 63 (523)
.|.+- -.|..|...+ ++...++. +|.-+. |..+.+.+++.+.+++.++..
T Consensus 34 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~---------v~~d~~~~~~~~~~~~~~~~~ 89 (152)
T 2lja_A 34 YIDVWATWCGPCRGELPALKELEEKYAGKDIHFVS---------LSCDKNKKAWENMVTKDQLKG 89 (152)
T ss_dssp EEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEE---------EECCSCHHHHHHHHHHHTCCS
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEE---------EEccCcHHHHHHHHHhcCCCC
Confidence 33444 6899996443 33333332 232222 222334567777777776653
No 152
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=20.56 E-value=2e+02 Score=22.00 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=38.1
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCCCE----EEEEecCCHHHHHHHHHH
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGK----VTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgk----VtV~g~vd~~eIikaI~k 58 (523)
.+|.|. |........|++.+++.--|.+|.|...+.+ +.|+. .+.++..++|+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f-~~~~~a~~a~~~ 67 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKF-ESPEVAERACRM 67 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEE-SSHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEE-CCHHHHHHHHHH
Confidence 456777 7777778889999999888988888764432 23443 366777777765
No 153
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=20.55 E-value=2.8e+02 Score=22.45 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=37.3
Q ss_pred CeEEEEEEe--ecCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHHcCCceEE
Q 009870 1 MQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAEL 65 (523)
Q Consensus 1 Mqkv~LkVe--M~C~~Ca~kIEKaL~kl~GV~sV~VDl~sgkVtV~g~---vd~~eIikaI~kaGy~a~l 65 (523)
|.+++|.|. ...-.-...+.+...++ ++.-..-|+..++|+|... ..++++++.|++--..+++
T Consensus 1 m~~~~~~v~G~VQGVGFR~~v~~~A~~l-gl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~~p~a~V 69 (91)
T 2fhm_A 1 MLQYRIIVDGRVQGVGFRYFVQMEADKR-KLAGWVKNRDDGRVEILAEGPENALQSFVEAVKNGSPFSKV 69 (91)
T ss_dssp CEEEEEEEEEECCSSCHHHHHHHHHHHT-TCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHTTCSSSEE
T ss_pred CEEEEEEEEEeECCcCHHHHHHHHHHHc-CCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHhCCCccEE
Confidence 566777777 45555555555544444 5665666788887877632 3456667777543222444
No 154
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=20.24 E-value=3e+02 Score=21.31 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=37.6
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC------CCEEEEEecCCHHHHHHHHHH
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE------QGKVTVSGNVDPSVLIKKLAK 58 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~------sgkVtV~g~vd~~eIikaI~k 58 (523)
+|.|. +........|++.+++.--|.+|++-.. .+-+.|+.. +.++..++|+.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~ 63 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFR-DLESSASAVRN 63 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEES-SHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEEC-CHHHHHHHHHH
Confidence 46677 7777778889999999988988888544 234555543 66666777764
No 155
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=20.24 E-value=2.6e+02 Score=20.97 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=38.5
Q ss_pred EEEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecC--CC----EEEEEecCCHHHHHHHHHHc
Q 009870 4 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE--QG----KVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 4 v~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~--sg----kVtV~g~vd~~eIikaI~ka 59 (523)
.+|.|. +........|++.++..--|.+|.+-.. +. -+.|+. .+.++..++|+.+
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~A~~A~~~l 68 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSF-FNKWDAENAIQQM 68 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE-SSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEE-CCHHHHHHHHHHc
Confidence 467777 8777778889999999888988887543 22 233443 4677777777753
No 156
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.19 E-value=1.8e+02 Score=23.26 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=36.7
Q ss_pred EEEEe-ecCHHHHHHHHHHHhcCCCeeEEEEecCC-----CEEEEEecCCHHHHHHHHHHc
Q 009870 5 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ-----GKVTVSGNVDPSVLIKKLAKS 59 (523)
Q Consensus 5 ~LkVe-M~C~~Ca~kIEKaL~kl~GV~sV~VDl~s-----gkVtV~g~vd~~eIikaI~ka 59 (523)
+|.|. |........|++.+...--|.+|.|.... ..+.|+. .+.++..++|+.+
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f-~~~~~a~~A~~~l 76 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTF-EQSIEAVQAISMF 76 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEE-SSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEE-CCHHHHHHHHHHh
Confidence 56677 77777788899999988888888776432 2233443 3667777777643
Done!