BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009871
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD-GDSIALDLL 374
+W A +A L P ++AGK V ELG G G + + AD VVATD D L+ L
Sbjct: 60 VWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSL 119
Query: 375 AQNV---TANLKPPFLAKLITKRL---EWGNRDHIEAIKEENN-EGFEVILGTDVSYIPE 427
N+ TAN K + ++ WG D ++++ + F+V+L D+ +
Sbjct: 120 ESNIREHTANSCSSETVKRASPKVVPYRWG--DSPDSLQRCTGLQRFQVVLLADLLSFHQ 177
Query: 428 AILPLFATAKELTA 441
A L + K L A
Sbjct: 178 AHDALLRSVKXLLA 191
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSI---ALDLLAQN 377
+ +NP I K VL++GCG G + A A V+A D I A+D++ N
Sbjct: 37 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDIIRLN 90
>pdb|3Q1Q|A Chain A, Structure Of A Bacterial Ribonuclease P Holoenzyme In
Complex With Trna
pdb|3Q1R|A Chain A, Crystal Structure Of A Bacterial Rnase P Holoenzyme In
Complex With Trna And In The Presence Of 5' Leader
Length = 118
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 178 FSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 222
N++ LF++NG D LG+ K+ +A +RWV+ +F
Sbjct: 28 LQNEYFVVLFRKNGLDYSRLGIVVKRKFGKATRRNKLKRWVREIF 72
>pdb|1NZ0|A Chain A, Rnase P Protein From Thermotoga Maritima
pdb|1NZ0|C Chain C, Rnase P Protein From Thermotoga Maritima
pdb|1NZ0|B Chain B, Rnase P Protein From Thermotoga Maritima
pdb|1NZ0|D Chain D, Rnase P Protein From Thermotoga Maritima
Length = 118
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 178 FSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 222
N++ LF++NG D LG+ K+ +A +RWV+ +F
Sbjct: 28 LQNEYFVVLFRKNGXDYSRLGIVVKRKFGKATRRNKLKRWVREIF 72
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSI---ALDLLAQN 377
+ +NP I K VL++GCG G + A A V+ D I A+D++ N
Sbjct: 56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 109
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 304 EYQHT-CRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-V 361
EY H L L E A + +L + G KVLE GCG G ++A + D +
Sbjct: 5 EYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEI 64
Query: 362 VATDGDSIALDLLAQNVTAN 381
+ D +L+ +N N
Sbjct: 65 TSIDISPESLEKARENTEKN 84
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134
G +V +G +G TI PL++ P V F+ + V + T V
Sbjct: 167 GEVEVPVIGGHSGVTILPLLSQVPGV-----SFTEQEVADLTKRIQNAGTEVVEAKAGGG 221
Query: 135 SDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 193
S LS + + + + L G +Q + E YV GDG A +FS L +NG +
Sbjct: 222 SATLSMGQAAARFGLSLVRALQG-EQGVVECAYVEGDGQYARFFSQPL---LLGKNGVE 276
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134
G +V +G +G TI PL++ P V F+ + V + T V
Sbjct: 167 GEVEVPVIGGHSGVTILPLLSQVPGV-----SFTEQEVADLTKRIQNAGTEVVEAKAGGG 221
Query: 135 SDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 193
S LS + + + + L G +Q + E YV GDG A +FS L +NG +
Sbjct: 222 SATLSMGQAAARFGLSLVRALQG-EQGVVECAYVEGDGQYARFFSQPL---LLGKNGVE 276
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134
G +V +G +G TI PL++ P V F+ + V + T V
Sbjct: 167 GEVEVPVIGGHSGVTILPLLSQVPGV-----SFTEQEVADLTKRIQNAGTEVVEAKAGGG 221
Query: 135 SDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 193
S LS + + + + L G +Q + E YV GDG A +FS L +NG +
Sbjct: 222 SATLSMGQAAARFGLSLVRALQG-EQGVVECAYVEGDGQYARFFSQPL---LLGKNGVE 276
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLL 374
+W+ + +L P G+ +L+LGCG G + +A A+ V+ TD + ++
Sbjct: 41 FVWQYGEDLLQLLNPQP----GEFILDLGCGTGQLTEKIAQSGAE-VLGTDNAATXIEKA 95
Query: 375 AQN 377
QN
Sbjct: 96 RQN 98
>pdb|4HS7|A Chain A, 2.6 Angstrom Structure Of The Extracellular Solute-Binding
Protein From Staphylococcus Aureus In Complex With Peg.
pdb|4HS7|B Chain B, 2.6 Angstrom Structure Of The Extracellular Solute-Binding
Protein From Staphylococcus Aureus In Complex With Peg.
pdb|4HW8|A Chain A, 2.25 Angstrom Structure Of The Extracellular
Solute-Binding Protein From Staphylococcus Aureus In
Complex With Maltose.
pdb|4HW8|B Chain B, 2.25 Angstrom Structure Of The Extracellular
Solute-Binding Protein From Staphylococcus Aureus In
Complex With Maltose
Length = 420
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 174 RAFYFSNDFLTS----LFKENG--FDVEELGLCCKQVENRARELVMNRRW 217
+ FYF+ FL +FK+NG +D+ +LGL K V A L ++W
Sbjct: 192 KNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERL---QKW 238
>pdb|1M06|G Chain G, Structural Studies Of Bacteriophage Alpha3 Assembly, X-Ray
Crystallography
pdb|1M0F|G Chain G, Structural Studies Of Bacteriophage Alpha3 Assembly, Cryo-
Electron Microscopy
pdb|1RB8|G Chain G, The Phix174 Dna Binding Protein J In Two Different Capsid
Environments
Length = 187
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 313 GLMLWESAHLMAAVLARNPTIVAGKKV----LELGCGCGGICSMVAAGSADLVVATDGDS 368
G++ +ESA + PT +AG +V +E+ G GG+CS + D+ T G++
Sbjct: 98 GIVRFESA-------SEQPTSIAGSEVEHYPIEMSVGSGGVCSARDCATVDIHPRTSGNN 150
Query: 369 IALDLL 374
+ + ++
Sbjct: 151 VFVGVI 156
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDG 366
+ AG K+LELGCG G A D V ATDG
Sbjct: 41 LPAGAKILELGCGAGYQAEAXLAAGFD-VDATDG 73
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVA--AGSADLVVATD 365
++AH +A +A + G+K+LE+GCG G + +++A GS+ V D
Sbjct: 28 QTAHRLA--IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|1Q2B|A Chain A, Cellobiohydrolase Cel7a With Disulphide Bridge Added
Across Exo-Loop By Mutations D241c And D249c
Length = 434
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGI 349
+WE A+ ++ L +P G+++ E GCGCGG
Sbjct: 215 IWE-ANSISEALTPHPCTTVGQEICE-GCGCGGT 246
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 167 YVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 200
+ G +AF+ +ND L + ++N FD + +C
Sbjct: 32 FAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMC 65
>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
Length = 302
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAG-NTIFPLIAAYP 98
EAKKY DL + R+ RF + + ++ G + GA +D EV G T P+ A
Sbjct: 220 EAKKYMDLGFHRNLYRFSPEDY---RDLGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGH 276
Query: 99 DVFVYACDFSP 109
D +A +F P
Sbjct: 277 DAAEFAPEFHP 287
>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
Length = 302
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAG-NTIFPLIAAYP 98
EAKKY DL + R+ RF + + ++ G + GA +D EV G T P+ A
Sbjct: 220 EAKKYMDLGFHRNLYRFSPEDY---RDLGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGH 276
Query: 99 DVFVYACDFSP 109
D +A +F P
Sbjct: 277 DAAEFAPEFHP 287
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1) From
Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALD 372
++ A+L R P ++VL+LGCG G + +A + V DGD +D
Sbjct: 44 ILLAILGRQP-----ERVLDLGCGEGWLLRALADRGIE-AVGVDGDRTLVD 88
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 302 SKEYQHTCR---STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA 358
S+ Y R + G ++ A L+ A R G K+L+ GCG G I ++
Sbjct: 16 SENYAQRWRNLAAAGNDIYGEARLIDAXAPR------GAKILDAGCGQGRIGGYLSKQGH 69
Query: 359 DLVVATDGDSIALDLLAQN 377
D V+ TD D I +D Q+
Sbjct: 70 D-VLGTDLDPILIDYAKQD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,529,814
Number of Sequences: 62578
Number of extensions: 589162
Number of successful extensions: 1757
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 29
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)