Query 009871
Match_columns 523
No_of_seqs 592 out of 5099
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 18:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2361 Predicted methyltransf 100.0 6E-35 1.3E-39 262.7 15.4 216 9-225 3-263 (264)
2 PF10294 Methyltransf_16: Puta 99.9 2.8E-26 6.1E-31 207.4 12.3 154 309-476 13-173 (173)
3 PLN02336 phosphoethanolamine N 99.9 5.2E-23 1.1E-27 217.1 34.6 336 71-484 33-413 (475)
4 KOG3201 Uncharacterized conser 99.7 6E-18 1.3E-22 142.9 5.9 156 313-483 7-164 (201)
5 PRK11783 rlmL 23S rRNA m(2)G24 99.7 4.4E-15 9.5E-20 162.5 26.6 171 286-486 500-681 (702)
6 COG2264 PrmA Ribosomal protein 99.7 6.8E-16 1.5E-20 147.7 15.8 160 294-485 129-288 (300)
7 PRK01544 bifunctional N5-gluta 99.7 4.4E-15 9.5E-20 156.1 22.2 297 76-481 139-484 (506)
8 PF06325 PrmA: Ribosomal prote 99.7 6.9E-16 1.5E-20 149.6 13.6 157 293-485 127-283 (295)
9 PLN02396 hexaprenyldihydroxybe 99.6 2.1E-15 4.5E-20 148.8 14.4 168 25-198 72-288 (322)
10 COG2226 UbiE Methylase involve 99.6 6.1E-15 1.3E-19 137.8 15.2 124 69-196 45-221 (238)
11 PF05175 MTS: Methyltransferas 99.6 7.1E-15 1.5E-19 132.9 15.1 142 296-469 2-149 (170)
12 COG4123 Predicted O-methyltran 99.6 1E-14 2.2E-19 136.1 16.2 160 292-483 14-192 (248)
13 COG3897 Predicted methyltransf 99.6 2.2E-15 4.7E-20 132.2 9.2 130 310-463 54-183 (218)
14 PF01209 Ubie_methyltran: ubiE 99.6 1.9E-15 4E-20 142.9 7.0 80 69-152 41-122 (233)
15 COG2813 RsmC 16S RNA G1207 met 99.6 7.7E-14 1.7E-18 132.8 16.8 146 292-470 125-276 (300)
16 PLN02233 ubiquinone biosynthes 99.6 4E-14 8.7E-19 137.0 15.1 125 70-198 68-247 (261)
17 COG2227 UbiG 2-polyprenyl-3-me 99.6 5E-15 1.1E-19 135.6 6.5 119 27-152 10-130 (243)
18 PRK15001 SAM-dependent 23S rib 99.5 3.2E-13 7E-18 135.6 18.5 149 285-461 188-342 (378)
19 KOG2793 Putative N2,N2-dimethy 99.5 5.7E-14 1.2E-18 131.1 12.1 164 308-484 48-227 (248)
20 TIGR00537 hemK_rel_arch HemK-r 99.5 3.9E-13 8.4E-18 122.9 16.5 138 320-486 8-166 (179)
21 PLN02244 tocopherol O-methyltr 99.5 6E-13 1.3E-17 133.8 18.4 133 334-485 117-278 (340)
22 KOG1271 Methyltransferases [Ge 99.5 1.5E-13 3.2E-18 119.0 11.8 119 75-197 67-203 (227)
23 PRK15068 tRNA mo(5)U34 methylt 99.5 9.8E-13 2.1E-17 130.8 19.4 173 316-510 104-298 (322)
24 PRK00517 prmA ribosomal protei 99.5 6.7E-13 1.5E-17 127.8 17.3 142 311-485 97-238 (250)
25 PLN02396 hexaprenyldihydroxybe 99.5 5E-13 1.1E-17 132.0 16.0 132 334-485 130-289 (322)
26 TIGR00452 methyltransferase, p 99.5 1.2E-12 2.6E-17 128.7 18.4 173 316-510 103-297 (314)
27 PLN02244 tocopherol O-methyltr 99.5 2.4E-13 5.2E-18 136.7 13.2 121 74-199 117-278 (340)
28 TIGR00406 prmA ribosomal prote 99.5 1E-12 2.2E-17 129.1 17.2 147 311-485 137-283 (288)
29 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.4E-13 3.1E-18 126.1 8.5 108 334-463 58-165 (243)
30 COG2230 Cfa Cyclopropane fatty 99.5 1.8E-12 3.8E-17 123.4 15.8 144 318-483 55-221 (283)
31 PRK00107 gidB 16S rRNA methylt 99.5 4.7E-13 1E-17 122.1 11.4 113 75-197 45-167 (187)
32 TIGR02752 MenG_heptapren 2-hep 99.5 1E-12 2.2E-17 125.4 14.1 80 69-152 39-120 (231)
33 PTZ00098 phosphoethanolamine N 99.5 6.6E-13 1.4E-17 128.6 12.8 124 69-198 46-201 (263)
34 PF02353 CMAS: Mycolic acid cy 99.4 2.1E-12 4.5E-17 124.9 15.5 146 318-485 45-217 (273)
35 PF12847 Methyltransf_18: Meth 99.4 6.2E-13 1.3E-17 111.6 10.4 106 335-459 1-111 (112)
36 KOG1270 Methyltransferases [Co 99.4 1.3E-13 2.9E-18 127.0 6.7 166 22-196 27-246 (282)
37 PRK11036 putative S-adenosyl-L 99.4 2.5E-12 5.5E-17 124.4 16.1 130 335-483 44-205 (255)
38 PTZ00098 phosphoethanolamine N 99.4 2.7E-12 5.9E-17 124.3 15.6 140 324-485 41-202 (263)
39 PLN02233 ubiquinone biosynthes 99.4 8.7E-12 1.9E-16 120.7 17.5 112 333-461 71-184 (261)
40 KOG1540 Ubiquinone biosynthesi 99.4 4.2E-12 9.1E-17 116.2 14.2 80 69-152 94-183 (296)
41 PRK00107 gidB 16S rRNA methylt 99.4 7.5E-12 1.6E-16 114.2 15.6 124 335-485 45-169 (187)
42 PRK14967 putative methyltransf 99.4 1.8E-11 3.8E-16 116.0 18.4 149 319-491 21-190 (223)
43 PRK11207 tellurite resistance 99.4 8.3E-12 1.8E-16 115.7 15.6 102 334-457 29-132 (197)
44 PRK14103 trans-aconitate 2-met 99.4 1.9E-12 4.2E-17 125.3 11.7 72 70-152 24-95 (255)
45 COG4123 Predicted O-methyltran 99.4 1.5E-12 3.3E-17 121.6 10.4 149 71-226 40-216 (248)
46 COG2890 HemK Methylase of poly 99.4 2.2E-11 4.8E-16 118.4 18.6 171 278-484 65-262 (280)
47 PRK08287 cobalt-precorrin-6Y C 99.4 3E-11 6.4E-16 111.2 18.4 127 332-484 28-155 (187)
48 TIGR02021 BchM-ChlM magnesium 99.4 2.2E-12 4.7E-17 122.0 11.1 158 34-200 6-207 (219)
49 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.6E-12 7.8E-17 126.2 12.9 121 74-200 112-257 (340)
50 PRK14968 putative methyltransf 99.4 1.6E-11 3.6E-16 113.0 16.6 145 316-485 8-173 (188)
51 TIGR02752 MenG_heptapren 2-hep 99.4 1.9E-11 4.1E-16 116.6 17.3 109 332-460 42-152 (231)
52 TIGR00138 gidB 16S rRNA methyl 99.4 1.1E-11 2.4E-16 112.8 14.8 124 335-485 42-169 (181)
53 PF13847 Methyltransf_31: Meth 99.4 4.3E-12 9.3E-17 112.7 11.7 108 335-461 3-112 (152)
54 TIGR00138 gidB 16S rRNA methyl 99.4 4.1E-12 8.9E-17 115.7 11.2 116 75-200 42-170 (181)
55 PLN02585 magnesium protoporphy 99.4 4.1E-12 8.9E-17 125.1 11.9 116 75-199 144-299 (315)
56 PRK11036 putative S-adenosyl-L 99.4 3.1E-12 6.6E-17 123.8 10.8 119 74-197 43-205 (255)
57 PF08241 Methyltransf_11: Meth 99.4 2.4E-12 5.3E-17 104.2 8.5 95 340-457 1-95 (95)
58 PF12847 Methyltransf_18: Meth 99.4 2.4E-12 5.3E-17 107.9 8.3 75 75-154 1-78 (112)
59 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.8E-11 4E-16 114.2 15.0 150 44-199 2-187 (213)
60 smart00828 PKS_MT Methyltransf 99.4 2.1E-11 4.5E-16 115.7 15.6 129 337-485 1-144 (224)
61 TIGR00477 tehB tellurite resis 99.3 2.1E-11 4.6E-16 112.8 15.0 102 334-458 29-132 (195)
62 PRK15128 23S rRNA m(5)C1962 me 99.3 1.3E-10 2.9E-15 118.2 22.0 172 287-485 183-369 (396)
63 TIGR03533 L3_gln_methyl protei 99.3 6.5E-11 1.4E-15 115.9 19.0 167 284-483 80-272 (284)
64 PRK11207 tellurite resistance 99.3 8.5E-12 1.8E-16 115.6 12.0 121 69-198 24-169 (197)
65 KOG1270 Methyltransferases [Co 99.3 2.7E-12 5.8E-17 118.4 8.3 110 334-463 88-199 (282)
66 PRK15068 tRNA mo(5)U34 methylt 99.3 1.5E-11 3.1E-16 122.4 13.5 127 70-202 117-277 (322)
67 PRK12335 tellurite resistance 99.3 2.9E-12 6.3E-17 126.0 8.4 116 74-198 119-258 (287)
68 PRK11873 arsM arsenite S-adeno 99.3 3.3E-11 7.2E-16 117.9 15.7 133 333-485 75-230 (272)
69 PF08241 Methyltransf_11: Meth 99.3 2.6E-12 5.7E-17 104.0 6.5 66 80-152 1-66 (95)
70 PF13489 Methyltransf_23: Meth 99.3 9.5E-12 2.1E-16 111.4 10.7 119 333-482 20-160 (161)
71 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.2E-16 130.0 13.9 123 71-198 262-413 (475)
72 COG2226 UbiE Methylase involve 99.3 2.5E-11 5.4E-16 113.6 13.7 109 335-463 51-160 (238)
73 PRK13255 thiopurine S-methyltr 99.3 5.4E-11 1.2E-15 111.5 16.0 151 43-200 4-191 (218)
74 PF08003 Methyltransf_9: Prote 99.3 7.4E-11 1.6E-15 112.3 16.9 167 317-507 98-288 (315)
75 PF07021 MetW: Methionine bios 99.3 1.3E-11 2.8E-16 110.1 11.0 70 74-152 12-81 (193)
76 TIGR00452 methyltransferase, p 99.3 6.6E-12 1.4E-16 123.5 10.1 129 72-206 118-280 (314)
77 PF05401 NodS: Nodulation prot 99.3 1.6E-11 3.4E-16 109.7 11.3 125 335-483 43-178 (201)
78 PLN02490 MPBQ/MSBQ methyltrans 99.3 6.5E-11 1.4E-15 117.4 16.9 128 335-485 113-256 (340)
79 TIGR03704 PrmC_rel_meth putati 99.3 1.3E-10 2.9E-15 111.6 18.5 127 336-485 87-240 (251)
80 TIGR00477 tehB tellurite resis 99.3 9.6E-12 2.1E-16 115.1 10.2 120 70-198 25-168 (195)
81 PRK05134 bifunctional 3-demeth 99.3 9E-11 2E-15 112.1 17.2 162 324-511 37-226 (233)
82 PRK09489 rsmC 16S ribosomal RN 99.3 4.7E-11 1E-15 119.4 15.7 134 295-461 166-305 (342)
83 PRK00216 ubiE ubiquinone/menaq 99.3 7.6E-11 1.7E-15 112.9 16.7 108 334-460 50-159 (239)
84 PRK08287 cobalt-precorrin-6Y C 99.3 2.5E-11 5.5E-16 111.7 12.3 125 70-200 26-157 (187)
85 PF13847 Methyltransf_31: Meth 99.3 1.1E-11 2.5E-16 110.0 9.1 76 74-152 2-79 (152)
86 PRK11873 arsM arsenite S-adeno 99.3 1.9E-11 4.1E-16 119.6 11.4 123 73-199 75-230 (272)
87 PRK00121 trmB tRNA (guanine-N( 99.3 6.1E-12 1.3E-16 117.0 7.4 124 68-194 34-176 (202)
88 PRK11805 N5-glutamine S-adenos 99.3 2.4E-10 5.2E-15 112.9 18.9 167 284-483 92-284 (307)
89 PRK07580 Mg-protoporphyrin IX 99.3 2E-11 4.3E-16 116.3 10.9 111 33-152 13-133 (230)
90 PRK10258 biotin biosynthesis p 99.3 1.2E-10 2.5E-15 112.6 16.1 74 69-152 36-109 (251)
91 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.4E-11 3E-16 118.5 9.5 73 74-152 55-131 (247)
92 TIGR02021 BchM-ChlM magnesium 99.3 1.2E-10 2.5E-15 110.2 15.3 138 323-485 45-206 (219)
93 PF03848 TehB: Tellurite resis 99.3 7.5E-11 1.6E-15 106.8 13.2 122 71-201 26-171 (192)
94 PRK10258 biotin biosynthesis p 99.3 9.4E-11 2E-15 113.2 14.7 101 334-460 41-141 (251)
95 TIGR00536 hemK_fam HemK family 99.3 2E-10 4.3E-15 112.7 17.2 125 337-483 116-267 (284)
96 PF13649 Methyltransf_25: Meth 99.3 5.8E-12 1.3E-16 103.6 5.3 70 79-152 1-73 (101)
97 PRK00377 cbiT cobalt-precorrin 99.3 2E-10 4.3E-15 106.7 16.2 130 331-482 36-167 (198)
98 KOG1271 Methyltransferases [Ge 99.3 9.6E-11 2.1E-15 101.8 12.8 148 318-486 46-206 (227)
99 PF01209 Ubie_methyltran: ubiE 99.3 4.1E-11 8.9E-16 113.4 11.7 112 334-465 46-159 (233)
100 COG2263 Predicted RNA methylas 99.3 2.3E-10 5.1E-15 100.9 15.5 125 332-486 42-169 (198)
101 PRK14966 unknown domain/N5-glu 99.3 5.7E-10 1.2E-14 112.3 20.4 173 278-485 207-405 (423)
102 PLN02585 magnesium protoporphy 99.2 1.7E-10 3.8E-15 113.6 16.0 139 324-485 134-299 (315)
103 PRK00121 trmB tRNA (guanine-N( 99.2 6.2E-11 1.3E-15 110.3 12.1 128 335-481 40-177 (202)
104 PRK06202 hypothetical protein; 99.2 3.8E-11 8.2E-16 114.5 10.8 73 74-152 59-135 (232)
105 PRK01683 trans-aconitate 2-met 99.2 9.1E-11 2E-15 113.9 13.7 75 69-152 25-99 (258)
106 PRK11088 rrmA 23S rRNA methylt 99.2 1.5E-10 3.4E-15 113.0 15.3 91 74-177 84-180 (272)
107 PRK14966 unknown domain/N5-glu 99.2 5.8E-11 1.3E-15 119.4 12.3 120 75-197 251-403 (423)
108 smart00828 PKS_MT Methyltransf 99.2 3.4E-11 7.4E-16 114.3 10.1 119 77-200 1-145 (224)
109 PRK00216 ubiE ubiquinone/menaq 99.2 1.7E-10 3.7E-15 110.5 15.0 76 73-152 49-127 (239)
110 PRK14103 trans-aconitate 2-met 99.2 2.4E-10 5.2E-15 110.6 15.5 99 332-458 26-125 (255)
111 PRK01544 bifunctional N5-gluta 99.2 2.8E-10 6E-15 120.0 16.9 174 279-484 69-292 (506)
112 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.4E-10 3E-15 111.6 13.5 106 335-461 56-166 (247)
113 PF13489 Methyltransf_23: Meth 99.2 3.8E-11 8.2E-16 107.5 9.0 109 73-196 20-160 (161)
114 PRK05134 bifunctional 3-demeth 99.2 8.7E-11 1.9E-15 112.2 11.9 161 29-198 4-204 (233)
115 PRK05785 hypothetical protein; 99.2 9.5E-11 2.1E-15 110.9 11.9 66 75-152 51-116 (226)
116 PRK08317 hypothetical protein; 99.2 1.3E-10 2.8E-15 111.3 12.8 79 70-152 14-93 (241)
117 PRK08317 hypothetical protein; 99.2 5.4E-10 1.2E-14 107.0 16.8 117 322-459 6-124 (241)
118 PRK04266 fibrillarin; Provisio 99.2 9.1E-11 2E-15 110.4 10.7 128 70-199 67-210 (226)
119 PRK04266 fibrillarin; Provisio 99.2 8.8E-10 1.9E-14 103.8 17.3 144 320-486 59-211 (226)
120 PRK11705 cyclopropane fatty ac 99.2 3.9E-10 8.5E-15 114.8 16.0 112 323-460 155-268 (383)
121 PRK06922 hypothetical protein; 99.2 7E-11 1.5E-15 124.1 10.5 116 35-152 370-493 (677)
122 TIGR00537 hemK_rel_arch HemK-r 99.2 1.2E-10 2.5E-15 106.5 10.8 116 74-197 18-163 (179)
123 TIGR01983 UbiG ubiquinone bios 99.2 6.4E-10 1.4E-14 105.5 16.3 131 334-484 44-202 (224)
124 COG4106 Tam Trans-aconitate me 99.2 4.3E-11 9.4E-16 107.0 7.5 79 65-152 20-98 (257)
125 PRK01683 trans-aconitate 2-met 99.2 2.9E-10 6.3E-15 110.3 14.1 110 324-459 20-130 (258)
126 PF13659 Methyltransf_26: Meth 99.2 6.4E-11 1.4E-15 100.1 8.1 108 336-460 1-116 (117)
127 TIGR00740 methyltransferase, p 99.2 6.8E-11 1.5E-15 113.3 9.3 73 74-152 52-128 (239)
128 PRK07580 Mg-protoporphyrin IX 99.2 3.5E-10 7.6E-15 107.8 14.1 127 334-485 62-214 (230)
129 PRK13256 thiopurine S-methyltr 99.2 3.2E-10 6.9E-15 105.8 13.3 153 41-198 8-196 (226)
130 PHA03411 putative methyltransf 99.2 1.1E-10 2.4E-15 110.8 10.3 112 74-194 63-209 (279)
131 TIGR02469 CbiT precorrin-6Y C5 99.2 7.5E-10 1.6E-14 94.4 14.7 107 331-459 15-122 (124)
132 COG2230 Cfa Cyclopropane fatty 99.2 4.6E-11 1E-15 113.8 7.7 148 42-197 39-221 (283)
133 TIGR03587 Pse_Me-ase pseudamin 99.2 9.3E-11 2E-15 109.0 9.6 70 74-152 42-111 (204)
134 COG1092 Predicted SAM-dependen 99.2 1.3E-09 2.9E-14 109.4 18.5 172 285-483 178-364 (393)
135 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.6E-10 5.7E-15 108.0 12.9 77 71-152 35-112 (223)
136 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 9.2E-10 2E-14 104.2 16.5 105 334-460 38-144 (223)
137 PF10672 Methyltrans_SAM: S-ad 99.2 1.9E-10 4.2E-15 111.0 11.8 166 286-477 85-256 (286)
138 PF07021 MetW: Methionine bios 99.2 4E-10 8.7E-15 100.6 12.8 124 335-486 13-168 (193)
139 TIGR03534 RF_mod_PrmC protein- 99.2 5.6E-10 1.2E-14 107.8 15.1 145 317-485 70-241 (251)
140 PF05175 MTS: Methyltransferas 99.2 4.9E-11 1.1E-15 107.8 7.1 73 75-152 31-104 (170)
141 PF05401 NodS: Nodulation prot 99.2 3.9E-10 8.4E-15 100.9 12.6 140 71-227 39-199 (201)
142 TIGR02081 metW methionine bios 99.2 2.9E-10 6.3E-15 105.3 12.4 126 75-209 13-177 (194)
143 TIGR00740 methyltransferase, p 99.2 5.8E-10 1.2E-14 106.9 14.9 108 335-463 53-165 (239)
144 TIGR03533 L3_gln_methyl protei 99.2 2E-10 4.3E-15 112.5 11.5 119 74-197 120-272 (284)
145 PRK12335 tellurite resistance 99.2 3.4E-10 7.4E-15 111.3 13.3 101 335-458 120-222 (287)
146 TIGR00091 tRNA (guanine-N(7)-) 99.2 5.5E-11 1.2E-15 110.0 7.2 121 74-195 15-154 (194)
147 PRK10909 rsmD 16S rRNA m(2)G96 99.2 5.2E-10 1.1E-14 103.0 13.1 108 334-461 52-161 (199)
148 KOG1500 Protein arginine N-met 99.2 2.7E-10 5.9E-15 107.8 11.4 164 325-519 167-342 (517)
149 PF08242 Methyltransf_12: Meth 99.2 1.1E-11 2.3E-16 101.6 1.7 98 340-455 1-99 (99)
150 COG2242 CobL Precorrin-6B meth 99.1 2.1E-09 4.6E-14 95.4 16.0 129 331-484 30-160 (187)
151 PRK13944 protein-L-isoaspartat 99.1 9E-10 2E-14 102.8 14.1 112 324-460 61-174 (205)
152 KOG3191 Predicted N6-DNA-methy 99.1 1.1E-09 2.4E-14 95.3 13.4 127 336-485 44-193 (209)
153 PRK06202 hypothetical protein; 99.1 6.5E-10 1.4E-14 106.0 13.4 93 334-440 59-158 (232)
154 TIGR03534 RF_mod_PrmC protein- 99.1 3.3E-10 7.2E-15 109.4 11.5 119 74-197 86-239 (251)
155 PF03848 TehB: Tellurite resis 99.1 3.1E-10 6.7E-15 102.9 10.5 103 333-458 28-132 (192)
156 KOG1541 Predicted protein carb 99.1 1.7E-10 3.6E-15 103.4 8.2 69 75-152 50-118 (270)
157 TIGR00080 pimt protein-L-isoas 99.1 9.5E-10 2.1E-14 103.5 13.8 113 322-460 64-178 (215)
158 TIGR02072 BioC biotin biosynth 99.1 2.7E-10 5.9E-15 109.1 10.3 71 75-152 34-104 (240)
159 PF08003 Methyltransf_9: Prote 99.1 6.5E-10 1.4E-14 105.9 12.4 134 70-209 110-277 (315)
160 COG2263 Predicted RNA methylas 99.1 8.8E-10 1.9E-14 97.3 12.3 117 74-199 44-168 (198)
161 TIGR02469 CbiT precorrin-6Y C5 99.1 2.2E-10 4.8E-15 97.7 8.5 79 71-152 15-94 (124)
162 PRK15001 SAM-dependent 23S rib 99.1 1.9E-10 4.2E-15 115.7 9.2 79 69-152 222-304 (378)
163 PF02353 CMAS: Mycolic acid cy 99.1 2.7E-10 5.8E-15 110.3 9.2 75 70-152 57-133 (273)
164 PLN02672 methionine S-methyltr 99.1 1.4E-09 3E-14 121.6 16.0 152 318-486 100-304 (1082)
165 PRK09328 N5-glutamine S-adenos 99.1 1.6E-09 3.5E-14 106.2 14.7 144 318-484 91-261 (275)
166 COG2890 HemK Methylase of poly 99.1 4E-10 8.6E-15 109.6 10.2 69 78-152 113-182 (280)
167 TIGR01177 conserved hypothetic 99.1 1.2E-09 2.6E-14 109.7 13.8 137 322-485 169-315 (329)
168 TIGR01983 UbiG ubiquinone bios 99.1 5.2E-10 1.1E-14 106.1 10.4 119 74-198 44-202 (224)
169 PRK09328 N5-glutamine S-adenos 99.1 8E-10 1.7E-14 108.3 12.1 119 74-197 107-260 (275)
170 PRK13942 protein-L-isoaspartat 99.1 1.4E-09 3E-14 102.0 13.0 114 320-459 61-176 (212)
171 KOG4300 Predicted methyltransf 99.1 3.2E-10 6.9E-15 100.7 8.0 97 71-176 72-180 (252)
172 COG4976 Predicted methyltransf 99.1 1.6E-10 3.5E-15 104.1 6.2 140 322-486 113-266 (287)
173 PRK00377 cbiT cobalt-precorrin 99.1 5.6E-10 1.2E-14 103.7 10.1 115 72-194 37-165 (198)
174 TIGR03587 Pse_Me-ase pseudamin 99.1 8.1E-10 1.8E-14 102.7 11.0 98 335-460 43-143 (204)
175 TIGR02072 BioC biotin biosynth 99.1 1E-09 2.2E-14 105.1 12.0 103 334-460 33-136 (240)
176 PRK11805 N5-glutamine S-adenos 99.1 7.2E-10 1.6E-14 109.5 11.1 71 77-152 135-207 (307)
177 PRK13168 rumA 23S rRNA m(5)U19 99.1 2.4E-09 5.3E-14 111.8 15.6 143 320-485 282-424 (443)
178 PF05724 TPMT: Thiopurine S-me 99.1 8.8E-10 1.9E-14 103.1 10.8 151 42-199 3-190 (218)
179 TIGR00095 RNA methyltransferas 99.1 8.9E-10 1.9E-14 101.0 10.7 110 334-460 48-160 (189)
180 TIGR02716 C20_methyl_CrtF C-20 99.1 4.6E-09 9.9E-14 104.5 16.6 116 324-461 138-256 (306)
181 TIGR00536 hemK_fam HemK family 99.1 7.8E-10 1.7E-14 108.6 10.9 71 77-152 116-188 (284)
182 TIGR02081 metW methionine bios 99.1 3.8E-09 8.3E-14 97.8 14.6 142 335-506 13-186 (194)
183 PRK11188 rrmJ 23S rRNA methylt 99.1 7.1E-09 1.5E-13 96.8 16.3 137 324-486 40-190 (209)
184 PHA03411 putative methyltransf 99.0 4.2E-09 9.2E-14 100.1 14.3 121 335-481 64-210 (279)
185 PTZ00146 fibrillarin; Provisio 99.0 9.6E-09 2.1E-13 98.9 16.5 151 314-485 107-271 (293)
186 TIGR01177 conserved hypothetic 99.0 7.2E-10 1.6E-14 111.2 9.0 120 72-198 179-314 (329)
187 PF08242 Methyltransf_12: Meth 99.0 9.5E-11 2.1E-15 95.9 2.2 71 80-152 1-72 (99)
188 KOG1499 Protein arginine N-met 99.0 8.5E-10 1.8E-14 106.7 9.0 105 325-440 50-157 (346)
189 PRK13944 protein-L-isoaspartat 99.0 1.2E-09 2.6E-14 101.9 9.8 80 69-152 66-148 (205)
190 PRK14967 putative methyltransf 99.0 2.3E-09 5E-14 101.5 11.5 118 74-197 35-182 (223)
191 KOG2904 Predicted methyltransf 99.0 1.1E-08 2.3E-13 95.0 15.2 136 311-464 122-290 (328)
192 PRK13942 protein-L-isoaspartat 99.0 1.6E-09 3.5E-14 101.5 9.7 80 69-152 70-151 (212)
193 PRK07402 precorrin-6B methylas 99.0 1.1E-08 2.4E-13 94.9 15.2 128 332-483 37-168 (196)
194 PF13649 Methyltransf_25: Meth 99.0 5.5E-10 1.2E-14 91.7 5.8 90 339-440 1-97 (101)
195 PRK14968 putative methyltransf 99.0 3.1E-09 6.8E-14 97.8 11.3 117 74-197 22-171 (188)
196 PRK05785 hypothetical protein; 99.0 4E-09 8.8E-14 99.8 12.1 87 335-440 51-137 (226)
197 TIGR00080 pimt protein-L-isoas 99.0 1.9E-09 4E-14 101.5 9.8 81 68-152 70-152 (215)
198 TIGR03704 PrmC_rel_meth putati 99.0 1.9E-09 4.2E-14 103.5 9.9 116 76-195 87-236 (251)
199 PLN03075 nicotianamine synthas 99.0 1.3E-09 2.7E-14 105.3 8.6 75 74-152 122-201 (296)
200 PRK00517 prmA ribosomal protei 99.0 3.8E-09 8.1E-14 101.8 11.8 109 74-198 118-237 (250)
201 COG2242 CobL Precorrin-6B meth 99.0 9.4E-09 2E-13 91.3 13.2 118 71-198 30-160 (187)
202 PF06325 PrmA: Ribosomal prote 99.0 1.8E-09 3.9E-14 105.0 9.3 112 74-198 160-282 (295)
203 PTZ00146 fibrillarin; Provisio 99.0 4.7E-09 1E-13 100.9 11.9 125 71-198 128-270 (293)
204 TIGR03438 probable methyltrans 99.0 5.1E-09 1.1E-13 103.6 12.6 62 74-135 62-126 (301)
205 PRK00312 pcm protein-L-isoaspa 99.0 1.2E-08 2.7E-13 95.8 14.6 113 321-460 64-176 (212)
206 PLN03075 nicotianamine synthas 99.0 1.1E-08 2.3E-13 98.9 14.3 132 335-486 123-261 (296)
207 TIGR00091 tRNA (guanine-N(7)-) 99.0 5.5E-09 1.2E-13 96.6 11.8 129 335-482 16-155 (194)
208 COG2264 PrmA Ribosomal protein 99.0 2.2E-09 4.8E-14 103.2 9.3 115 74-199 161-288 (300)
209 TIGR02716 C20_methyl_CrtF C-20 99.0 6.6E-09 1.4E-13 103.4 13.1 75 71-152 145-221 (306)
210 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.7E-09 3.7E-14 108.3 8.6 81 70-152 117-198 (390)
211 KOG3010 Methyltransferase [Gen 99.0 7.6E-10 1.6E-14 101.0 5.4 122 29-178 4-137 (261)
212 PF03602 Cons_hypoth95: Conser 99.0 3E-09 6.4E-14 96.8 9.2 120 323-462 32-156 (183)
213 KOG1540 Ubiquinone biosynthesi 98.9 2.2E-08 4.7E-13 92.2 14.5 135 331-483 96-237 (296)
214 smart00138 MeTrc Methyltransfe 98.9 2.4E-09 5.1E-14 103.7 8.7 111 335-461 99-244 (264)
215 PRK09489 rsmC 16S ribosomal RN 98.9 1.8E-09 3.9E-14 108.1 8.0 76 71-152 192-267 (342)
216 smart00138 MeTrc Methyltransfe 98.9 2.5E-09 5.5E-14 103.5 8.2 75 74-152 98-209 (264)
217 KOG4300 Predicted methyltransf 98.9 5E-09 1.1E-13 93.2 9.2 107 338-462 79-185 (252)
218 smart00650 rADc Ribosomal RNA 98.9 4.6E-09 1E-13 94.9 9.3 75 71-152 9-83 (169)
219 TIGR00478 tly hemolysin TlyA f 98.9 1.4E-08 3.1E-13 95.2 12.3 143 315-486 55-218 (228)
220 PRK04457 spermidine synthase; 98.9 5.3E-08 1.1E-12 94.2 16.6 122 335-476 66-194 (262)
221 PRK11705 cyclopropane fatty ac 98.9 7.5E-09 1.6E-13 105.4 11.2 72 71-152 163-234 (383)
222 PRK06922 hypothetical protein; 98.9 9.2E-09 2E-13 108.3 11.9 109 333-460 416-538 (677)
223 TIGR00406 prmA ribosomal prote 98.9 5.3E-09 1.2E-13 102.8 9.6 111 74-197 158-281 (288)
224 PRK11188 rrmJ 23S rRNA methylt 98.9 4.3E-09 9.4E-14 98.2 8.5 114 74-197 50-187 (209)
225 TIGR02085 meth_trns_rumB 23S r 98.9 3.8E-08 8.2E-13 100.3 15.6 124 335-485 233-356 (374)
226 PRK07402 precorrin-6B methylas 98.9 1E-08 2.2E-13 95.1 10.5 121 69-197 34-168 (196)
227 PLN02781 Probable caffeoyl-CoA 98.9 1.1E-08 2.3E-13 97.3 10.8 109 334-459 67-178 (234)
228 COG4106 Tam Trans-aconitate me 98.9 8.7E-09 1.9E-13 92.4 9.4 103 333-461 28-131 (257)
229 COG4976 Predicted methyltransf 98.9 3E-09 6.5E-14 96.0 6.3 116 75-200 125-266 (287)
230 COG2518 Pcm Protein-L-isoaspar 98.9 1.7E-08 3.7E-13 91.7 11.3 117 316-460 53-170 (209)
231 TIGR00438 rrmJ cell division p 98.9 9.7E-08 2.1E-12 87.9 16.5 138 322-485 19-170 (188)
232 TIGR00479 rumA 23S rRNA (uraci 98.9 9E-08 2E-12 99.9 18.0 145 319-485 276-420 (431)
233 PRK03522 rumB 23S rRNA methylu 98.9 4.6E-08 9.9E-13 97.5 14.7 124 335-485 173-296 (315)
234 cd02440 AdoMet_MTases S-adenos 98.8 3.2E-08 7E-13 80.6 11.1 102 338-458 1-103 (107)
235 PRK11727 23S rRNA mA1618 methy 98.8 8.5E-08 1.8E-12 94.4 15.5 87 335-427 114-203 (321)
236 PF13659 Methyltransf_26: Meth 98.8 4.8E-09 1E-13 88.6 5.9 74 76-152 1-76 (117)
237 PRK13943 protein-L-isoaspartat 98.8 4.4E-08 9.6E-13 96.9 13.5 109 326-460 71-181 (322)
238 PRK14902 16S rRNA methyltransf 98.8 6.7E-08 1.4E-12 101.1 15.6 144 319-485 238-408 (444)
239 PRK10901 16S rRNA methyltransf 98.8 6.3E-08 1.4E-12 100.6 15.2 141 319-482 232-398 (427)
240 TIGR03840 TMPT_Se_Te thiopurin 98.8 4.5E-08 9.8E-13 91.4 12.7 146 319-485 19-187 (213)
241 PRK13168 rumA 23S rRNA m(5)U19 98.8 1.8E-08 4E-13 105.2 11.2 82 69-152 291-373 (443)
242 COG2813 RsmC 16S RNA G1207 met 98.8 1.1E-08 2.3E-13 97.9 8.3 93 54-152 136-230 (300)
243 KOG1541 Predicted protein carb 98.8 2.9E-08 6.2E-13 89.3 10.3 121 335-480 50-182 (270)
244 PRK10901 16S rRNA methyltransf 98.8 2.1E-08 4.6E-13 104.2 10.6 80 71-152 240-319 (427)
245 COG2519 GCD14 tRNA(1-methylade 98.8 1E-07 2.2E-12 88.6 13.3 136 324-485 83-220 (256)
246 PRK14121 tRNA (guanine-N(7)-)- 98.8 1E-07 2.2E-12 95.7 14.3 109 335-461 122-237 (390)
247 PRK14903 16S rRNA methyltransf 98.8 2E-07 4.3E-12 96.7 16.8 130 334-482 236-392 (431)
248 PLN02672 methionine S-methyltr 98.8 1.9E-08 4.2E-13 112.6 9.8 72 76-152 119-209 (1082)
249 COG0742 N6-adenine-specific me 98.8 6.7E-08 1.4E-12 86.5 11.3 111 333-461 41-156 (187)
250 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.7E-07 3.7E-12 90.9 15.2 127 334-480 70-223 (264)
251 PF03141 Methyltransf_29: Puta 98.8 1.2E-08 2.5E-13 103.3 7.1 120 337-485 367-491 (506)
252 PRK14901 16S rRNA methyltransf 98.8 1.5E-07 3.2E-12 98.1 15.5 143 319-481 240-409 (434)
253 PRK11088 rrmA 23S rRNA methylt 98.8 8.2E-08 1.8E-12 93.8 12.8 106 323-461 74-183 (272)
254 PF01135 PCMT: Protein-L-isoas 98.8 2.4E-08 5.2E-13 92.7 8.1 111 324-460 61-173 (209)
255 PRK14904 16S rRNA methyltransf 98.7 3.2E-07 6.9E-12 95.9 17.2 143 315-482 233-403 (445)
256 TIGR00563 rsmB ribosomal RNA s 98.7 1.8E-07 3.8E-12 97.3 14.8 142 318-480 225-392 (426)
257 PHA03412 putative methyltransf 98.7 7.5E-08 1.6E-12 89.5 10.6 89 335-440 49-153 (241)
258 PRK05031 tRNA (uracil-5-)-meth 98.7 3.8E-07 8.2E-12 92.5 16.7 143 318-485 190-343 (362)
259 TIGR00438 rrmJ cell division p 98.7 3.5E-08 7.7E-13 90.8 8.3 70 73-152 30-104 (188)
260 KOG3191 Predicted N6-DNA-methy 98.7 1.1E-07 2.4E-12 83.0 10.6 117 74-195 42-189 (209)
261 PRK00312 pcm protein-L-isoaspa 98.7 5.5E-08 1.2E-12 91.4 9.4 78 69-152 72-150 (212)
262 PRK00811 spermidine synthase; 98.7 3.4E-07 7.4E-12 89.7 14.8 135 335-486 76-220 (283)
263 smart00650 rADc Ribosomal RNA 98.7 1.7E-07 3.7E-12 84.7 11.8 86 326-426 4-89 (169)
264 PRK04457 spermidine synthase; 98.7 5.2E-08 1.1E-12 94.2 8.6 76 74-152 65-142 (262)
265 PRK01581 speE spermidine synth 98.7 6E-07 1.3E-11 88.9 16.1 147 335-498 150-310 (374)
266 PF05219 DREV: DREV methyltran 98.7 2.6E-07 5.6E-12 86.4 12.8 122 335-486 94-241 (265)
267 PRK13943 protein-L-isoaspartat 98.7 6.9E-08 1.5E-12 95.5 9.3 80 69-152 74-155 (322)
268 PHA03412 putative methyltransf 98.7 4.2E-08 9.1E-13 91.2 7.1 69 75-152 49-120 (241)
269 PRK00274 ksgA 16S ribosomal RN 98.7 7.2E-08 1.6E-12 94.0 8.8 76 69-152 36-111 (272)
270 TIGR03438 probable methyltrans 98.7 1.5E-07 3.3E-12 93.1 11.3 113 335-461 63-179 (301)
271 PRK14896 ksgA 16S ribosomal RN 98.7 1E-07 2.3E-12 92.1 9.9 88 55-152 10-97 (258)
272 COG4122 Predicted O-methyltran 98.7 2.8E-07 6.1E-12 85.2 12.1 108 335-462 59-169 (219)
273 PRK13255 thiopurine S-methyltr 98.7 3.4E-07 7.4E-12 85.9 12.9 145 320-485 23-190 (218)
274 COG1041 Predicted DNA modifica 98.6 3E-07 6.5E-12 89.8 12.2 139 321-486 183-331 (347)
275 PF02390 Methyltransf_4: Putat 98.6 5.3E-08 1.1E-12 89.7 6.7 120 75-195 17-156 (195)
276 PRK03522 rumB 23S rRNA methylu 98.6 5.5E-08 1.2E-12 97.0 7.3 74 74-152 172-246 (315)
277 KOG3010 Methyltransferase [Gen 98.6 5.8E-08 1.3E-12 88.9 6.7 122 337-478 35-157 (261)
278 PRK01581 speE spermidine synth 98.6 1.2E-07 2.6E-12 93.8 9.3 124 71-197 146-295 (374)
279 PRK14904 16S rRNA methyltransf 98.6 1.2E-07 2.6E-12 99.1 9.9 76 72-152 247-324 (445)
280 PRK14901 16S rRNA methyltransf 98.6 1.2E-07 2.7E-12 98.6 9.8 82 71-152 248-331 (434)
281 KOG3420 Predicted RNA methylas 98.6 4.3E-08 9.3E-13 82.1 4.9 74 74-152 47-120 (185)
282 PRK03612 spermidine synthase; 98.6 8.8E-07 1.9E-11 94.1 16.2 132 335-482 297-441 (521)
283 TIGR00417 speE spermidine synt 98.6 9.6E-07 2.1E-11 86.1 15.2 139 335-489 72-218 (270)
284 PRK00050 16S rRNA m(4)C1402 me 98.6 1.2E-07 2.6E-12 92.2 8.7 87 63-152 7-96 (296)
285 TIGR00563 rsmB ribosomal RNA s 98.6 1.5E-07 3.4E-12 97.8 10.0 80 71-152 234-315 (426)
286 KOG2904 Predicted methyltransf 98.6 7.4E-08 1.6E-12 89.5 6.7 78 75-152 148-228 (328)
287 PLN02476 O-methyltransferase 98.6 4.7E-07 1E-11 87.2 12.2 108 334-461 117-230 (278)
288 TIGR00446 nop2p NOL1/NOP2/sun 98.6 6.8E-08 1.5E-12 93.7 6.4 78 71-152 67-146 (264)
289 PRK04148 hypothetical protein; 98.6 2.2E-07 4.7E-12 78.8 8.6 94 323-440 4-98 (134)
290 PRK14902 16S rRNA methyltransf 98.6 1.9E-07 4.2E-12 97.6 9.9 78 72-152 247-326 (444)
291 PF01596 Methyltransf_3: O-met 98.6 2.1E-07 4.6E-12 86.1 8.9 111 334-461 44-157 (205)
292 PRK00811 spermidine synthase; 98.6 1.3E-07 2.7E-12 92.7 7.8 77 73-152 74-156 (283)
293 TIGR00479 rumA 23S rRNA (uraci 98.6 1.9E-07 4.2E-12 97.4 9.6 80 70-152 287-368 (431)
294 PRK04148 hypothetical protein; 98.6 2.1E-07 4.5E-12 79.0 7.9 71 71-152 12-83 (134)
295 PRK11727 23S rRNA mA1618 methy 98.6 1.4E-07 3.1E-12 92.8 8.0 78 75-152 114-195 (321)
296 KOG3420 Predicted RNA methylas 98.6 1.4E-07 3E-12 79.1 6.6 82 331-424 44-125 (185)
297 PF08704 GCD14: tRNA methyltra 98.6 1E-06 2.3E-11 83.5 13.1 140 325-485 30-171 (247)
298 PRK14903 16S rRNA methyltransf 98.6 1.1E-07 2.5E-12 98.5 7.0 79 71-152 233-313 (431)
299 KOG2899 Predicted methyltransf 98.6 2.6E-07 5.7E-12 84.4 8.4 121 332-461 55-211 (288)
300 COG0220 Predicted S-adenosylme 98.5 1.4E-07 3.1E-12 88.2 6.7 118 68-186 41-172 (227)
301 PF01135 PCMT: Protein-L-isoas 98.5 2.9E-07 6.3E-12 85.4 8.3 81 68-152 65-147 (209)
302 PF06080 DUF938: Protein of un 98.5 1.1E-06 2.4E-11 80.0 11.6 136 338-485 28-192 (204)
303 KOG2920 Predicted methyltransf 98.5 6.3E-08 1.4E-12 91.4 3.6 135 311-461 89-236 (282)
304 PF08704 GCD14: tRNA methyltra 98.5 8.3E-07 1.8E-11 84.2 11.1 126 71-198 36-170 (247)
305 PLN02366 spermidine synthase 98.5 3E-06 6.4E-11 83.5 14.9 132 335-481 91-231 (308)
306 PRK03612 spermidine synthase; 98.5 4.7E-07 1E-11 96.2 9.9 117 73-192 295-437 (521)
307 TIGR02143 trmA_only tRNA (urac 98.5 3E-06 6.4E-11 85.7 15.2 141 320-485 183-334 (353)
308 PTZ00338 dimethyladenosine tra 98.5 4E-07 8.7E-12 89.2 8.5 88 56-152 18-107 (294)
309 TIGR00755 ksgA dimethyladenosi 98.5 5E-07 1.1E-11 87.2 9.1 67 67-136 21-87 (253)
310 PRK04338 N(2),N(2)-dimethylgua 98.5 8.7E-07 1.9E-11 90.0 10.9 100 336-459 58-158 (382)
311 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.5E-07 5.5E-12 101.8 7.5 139 75-219 538-699 (702)
312 COG2519 GCD14 tRNA(1-methylade 98.5 7.2E-07 1.6E-11 83.0 9.2 121 71-197 90-218 (256)
313 PRK00274 ksgA 16S ribosomal RN 98.5 5.5E-07 1.2E-11 87.8 8.9 87 324-426 31-117 (272)
314 PLN02366 spermidine synthase 98.5 4.4E-07 9.5E-12 89.4 8.1 78 73-152 89-171 (308)
315 COG2518 Pcm Protein-L-isoaspar 98.4 8.9E-07 1.9E-11 80.7 9.1 84 63-152 60-144 (209)
316 TIGR00308 TRM1 tRNA(guanine-26 98.4 2.2E-06 4.8E-11 86.6 12.5 101 336-459 45-147 (374)
317 PF02475 Met_10: Met-10+ like- 98.4 1E-06 2.2E-11 81.0 9.0 93 333-440 99-192 (200)
318 PRK15128 23S rRNA m(5)C1962 me 98.4 2.7E-07 5.8E-12 94.2 5.7 115 74-190 219-356 (396)
319 PF05185 PRMT5: PRMT5 arginine 98.4 1.5E-06 3.4E-11 89.8 11.1 107 323-440 174-287 (448)
320 PLN02781 Probable caffeoyl-CoA 98.4 3.1E-07 6.7E-12 87.3 5.5 80 73-152 66-150 (234)
321 PRK10909 rsmD 16S rRNA m(2)G96 98.4 4.9E-07 1.1E-11 83.3 6.7 75 74-152 52-127 (199)
322 PF01170 UPF0020: Putative RNA 98.4 2.6E-06 5.5E-11 77.5 11.2 137 323-485 16-171 (179)
323 cd02440 AdoMet_MTases S-adenos 98.4 9.5E-07 2.1E-11 71.7 7.7 71 78-152 1-72 (107)
324 PF03291 Pox_MCEL: mRNA cappin 98.4 1.3E-06 2.8E-11 86.9 9.5 138 314-461 41-188 (331)
325 COG2520 Predicted methyltransf 98.4 3.9E-06 8.4E-11 82.8 12.7 126 335-483 188-318 (341)
326 PRK14896 ksgA 16S ribosomal RN 98.4 1.7E-06 3.7E-11 83.7 10.1 86 323-424 17-102 (258)
327 KOG2361 Predicted methyltransf 98.4 1.3E-06 2.8E-11 80.1 8.5 107 338-461 74-185 (264)
328 PTZ00338 dimethyladenosine tra 98.4 1.7E-06 3.7E-11 84.8 9.8 88 324-425 25-112 (294)
329 PF06080 DUF938: Protein of un 98.4 1.5E-06 3.4E-11 79.0 8.4 92 60-152 11-108 (204)
330 COG2265 TrmA SAM-dependent met 98.3 6E-06 1.3E-10 84.9 13.5 143 320-485 278-420 (432)
331 TIGR02085 meth_trns_rumB 23S r 98.3 7.6E-07 1.6E-11 90.8 6.9 74 74-152 232-306 (374)
332 PLN02232 ubiquinone biosynthes 98.3 1.1E-06 2.3E-11 78.6 6.7 46 103-152 1-50 (160)
333 PF00891 Methyltransf_2: O-met 98.3 2.8E-06 6.2E-11 81.4 10.0 108 325-462 90-202 (241)
334 PF03291 Pox_MCEL: mRNA cappin 98.3 8E-07 1.7E-11 88.4 6.0 109 75-189 62-198 (331)
335 PLN02589 caffeoyl-CoA O-methyl 98.3 3.8E-06 8.3E-11 79.9 9.9 108 335-459 79-190 (247)
336 PF05891 Methyltransf_PK: AdoM 98.3 7.9E-06 1.7E-10 74.8 11.0 118 75-199 55-201 (218)
337 KOG2497 Predicted methyltransf 98.3 4E-07 8.7E-12 86.4 2.3 141 297-442 52-192 (262)
338 PF05724 TPMT: Thiopurine S-me 98.3 2.8E-06 6E-11 79.6 8.0 148 320-485 23-190 (218)
339 KOG1499 Protein arginine N-met 98.3 2.2E-06 4.7E-11 83.4 7.2 73 74-152 59-133 (346)
340 COG2521 Predicted archaeal met 98.2 8.8E-07 1.9E-11 80.6 4.1 123 72-197 131-275 (287)
341 KOG2352 Predicted spermine/spe 98.2 2.3E-05 5E-10 79.6 14.3 70 77-152 50-120 (482)
342 PRK13256 thiopurine S-methyltr 98.2 1.9E-05 4.1E-10 73.9 12.6 124 319-460 28-164 (226)
343 PF01170 UPF0020: Putative RNA 98.2 1.7E-06 3.7E-11 78.6 5.4 77 72-152 25-112 (179)
344 PF09445 Methyltransf_15: RNA 98.2 1.3E-05 2.7E-10 70.8 9.8 115 337-473 1-132 (163)
345 COG0030 KsgA Dimethyladenosine 98.2 8.2E-06 1.8E-10 77.4 9.2 91 55-152 11-101 (259)
346 TIGR00417 speE spermidine synt 98.2 4.2E-06 9.2E-11 81.5 7.5 76 74-152 71-151 (270)
347 KOG1975 mRNA cap methyltransfe 98.2 9.4E-06 2E-10 77.5 9.4 111 74-190 116-250 (389)
348 KOG0820 Ribosomal RNA adenine 98.2 8.4E-06 1.8E-10 76.1 8.8 73 72-152 55-129 (315)
349 PF05148 Methyltransf_8: Hypot 98.1 2E-05 4.3E-10 71.5 9.8 116 74-228 71-201 (219)
350 PF05148 Methyltransf_8: Hypot 98.1 3.6E-05 7.9E-10 69.8 11.4 132 314-486 52-186 (219)
351 PF05891 Methyltransf_PK: AdoM 98.1 1.3E-05 2.7E-10 73.5 8.4 131 335-485 55-201 (218)
352 COG2521 Predicted archaeal met 98.1 1.2E-05 2.6E-10 73.4 8.0 134 334-483 133-275 (287)
353 PF05219 DREV: DREV methyltran 98.1 1.2E-05 2.7E-10 75.3 8.4 64 75-152 94-157 (265)
354 PLN02823 spermine synthase 98.1 3.6E-05 7.8E-10 76.7 12.1 134 335-486 103-251 (336)
355 PF02527 GidB: rRNA small subu 98.1 2.6E-05 5.7E-10 70.8 10.2 116 78-199 51-175 (184)
356 KOG2899 Predicted methyltransf 98.1 1.8E-05 3.9E-10 72.6 9.0 47 74-120 57-103 (288)
357 PF01596 Methyltransf_3: O-met 98.1 5.6E-06 1.2E-10 76.7 5.7 79 74-152 44-127 (205)
358 COG3963 Phospholipid N-methylt 98.1 3.8E-05 8.2E-10 66.5 10.0 113 316-440 29-146 (194)
359 PLN02476 O-methyltransferase 98.0 5.2E-06 1.1E-10 80.0 5.2 79 73-152 116-200 (278)
360 PF09445 Methyltransf_15: RNA 98.0 3.2E-06 6.9E-11 74.6 3.3 71 78-152 2-75 (163)
361 PF02475 Met_10: Met-10+ like- 98.0 9.5E-06 2.1E-10 74.6 6.5 74 74-152 100-175 (200)
362 TIGR02143 trmA_only tRNA (urac 98.0 6.5E-06 1.4E-10 83.2 5.9 57 77-135 199-256 (353)
363 TIGR00095 RNA methyltransferas 98.0 8E-06 1.7E-10 74.9 5.8 76 75-152 49-127 (189)
364 TIGR00478 tly hemolysin TlyA f 98.0 1.6E-05 3.5E-10 74.7 7.9 74 74-152 74-149 (228)
365 PRK00536 speE spermidine synth 98.0 0.00013 2.7E-09 70.0 14.0 126 335-486 72-200 (262)
366 PF01861 DUF43: Protein of unk 98.0 0.00017 3.8E-09 67.0 14.4 154 311-485 21-178 (243)
367 PF10294 Methyltransf_16: Puta 98.0 6.2E-06 1.3E-10 74.6 4.9 78 74-152 44-125 (173)
368 PF05971 Methyltransf_10: Prot 98.0 3E-05 6.4E-10 75.2 9.7 87 336-427 103-191 (299)
369 PRK05031 tRNA (uracil-5-)-meth 98.0 8.1E-06 1.8E-10 82.9 6.2 58 76-135 207-265 (362)
370 TIGR00755 ksgA dimethyladenosi 98.0 2.2E-05 4.9E-10 75.7 8.9 69 324-399 18-86 (253)
371 COG1041 Predicted DNA modifica 98.0 2.1E-05 4.6E-10 77.0 8.7 124 71-201 193-332 (347)
372 PF01728 FtsJ: FtsJ-like methy 98.0 7.4E-06 1.6E-10 74.8 5.2 141 319-486 5-164 (181)
373 COG4122 Predicted O-methyltran 98.0 1E-05 2.2E-10 74.9 6.0 80 71-152 55-138 (219)
374 KOG1500 Protein arginine N-met 97.9 3.6E-05 7.8E-10 73.7 8.2 72 74-152 176-249 (517)
375 COG3963 Phospholipid N-methylt 97.9 3.3E-05 7.2E-10 66.9 7.0 89 59-152 32-123 (194)
376 PF00891 Methyltransf_2: O-met 97.9 3.8E-05 8.3E-10 73.6 8.5 71 72-155 97-167 (241)
377 KOG3045 Predicted RNA methylas 97.9 4.2E-05 9.1E-10 70.9 7.7 113 74-227 179-306 (325)
378 PF05185 PRMT5: PRMT5 arginine 97.9 4.8E-05 1E-09 78.9 9.1 72 76-152 187-264 (448)
379 KOG2940 Predicted methyltransf 97.9 2.1E-05 4.6E-10 71.4 5.2 127 75-207 72-235 (325)
380 KOG1975 mRNA cap methyltransfe 97.9 7.9E-05 1.7E-09 71.3 9.3 142 314-475 102-249 (389)
381 PF12147 Methyltransf_20: Puta 97.8 8.2E-05 1.8E-09 70.7 9.2 126 73-199 133-298 (311)
382 KOG3045 Predicted RNA methylas 97.8 0.00018 4E-09 66.7 11.1 129 315-486 161-292 (325)
383 PF01739 CheR: CheR methyltran 97.8 1.2E-05 2.7E-10 73.7 3.5 111 335-461 31-177 (196)
384 COG1189 Predicted rRNA methyla 97.8 0.00055 1.2E-08 63.3 13.7 143 318-486 62-225 (245)
385 KOG1661 Protein-L-isoaspartate 97.8 7.3E-05 1.6E-09 67.3 7.7 106 333-460 80-194 (237)
386 PRK10611 chemotaxis methyltran 97.8 3.8E-05 8.2E-10 74.7 6.5 110 337-461 117-264 (287)
387 COG1352 CheR Methylase of chem 97.8 6.9E-05 1.5E-09 71.9 8.0 111 336-462 97-244 (268)
388 PLN02589 caffeoyl-CoA O-methyl 97.8 1.9E-05 4.2E-10 75.1 4.2 78 74-152 78-162 (247)
389 KOG2940 Predicted methyltransf 97.8 4E-05 8.7E-10 69.6 5.9 101 336-458 73-173 (325)
390 PF05958 tRNA_U5-meth_tr: tRNA 97.8 0.00012 2.7E-09 74.0 10.2 75 315-395 177-251 (352)
391 PF04816 DUF633: Family of unk 97.8 0.00011 2.3E-09 68.0 8.5 112 79-201 1-126 (205)
392 PF02390 Methyltransf_4: Putat 97.8 0.00028 6E-09 65.1 11.0 127 338-482 20-157 (195)
393 PF05958 tRNA_U5-meth_tr: tRNA 97.7 7.9E-05 1.7E-09 75.3 8.0 65 68-135 190-255 (352)
394 PRK04338 N(2),N(2)-dimethylgua 97.7 3.5E-05 7.6E-10 78.4 5.5 72 76-152 58-131 (382)
395 TIGR01444 fkbM_fam methyltrans 97.7 6.3E-05 1.4E-09 65.7 6.5 58 78-135 1-59 (143)
396 PLN02823 spermine synthase 97.7 7.8E-05 1.7E-09 74.4 7.8 76 74-152 102-182 (336)
397 PRK11933 yebU rRNA (cytosine-C 97.7 0.00051 1.1E-08 71.7 14.0 123 318-461 98-244 (470)
398 TIGR00006 S-adenosyl-methyltra 97.7 0.00015 3.2E-09 70.9 9.3 91 62-152 7-98 (305)
399 COG2265 TrmA SAM-dependent met 97.7 0.00011 2.3E-09 75.8 8.8 82 68-152 286-368 (432)
400 KOG2187 tRNA uracil-5-methyltr 97.7 0.00019 4.2E-09 73.1 9.8 125 319-461 367-492 (534)
401 PF12147 Methyltransf_20: Puta 97.7 0.00068 1.5E-08 64.6 12.7 116 335-466 135-256 (311)
402 PLN02232 ubiquinone biosynthes 97.7 0.0002 4.4E-09 63.9 8.9 83 362-461 1-83 (160)
403 COG4076 Predicted RNA methylas 97.7 6.9E-05 1.5E-09 66.0 5.5 90 337-440 34-125 (252)
404 COG1092 Predicted SAM-dependen 97.7 4.6E-05 1E-09 76.9 5.0 77 75-152 217-296 (393)
405 COG0357 GidB Predicted S-adeno 97.7 0.00018 3.9E-09 66.5 8.5 120 76-201 68-197 (215)
406 PF01269 Fibrillarin: Fibrilla 97.7 0.00046 1E-08 63.4 10.9 122 71-198 69-211 (229)
407 KOG2187 tRNA uracil-5-methyltr 97.7 5.9E-05 1.3E-09 76.8 5.4 71 63-135 371-442 (534)
408 KOG2915 tRNA(1-methyladenosine 97.6 0.00076 1.6E-08 63.3 12.1 125 71-198 101-234 (314)
409 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 8.9E-05 1.9E-09 70.6 6.1 142 333-484 54-238 (256)
410 PF08123 DOT1: Histone methyla 97.6 0.0002 4.4E-09 66.2 8.2 115 310-432 21-141 (205)
411 COG0116 Predicted N6-adenine-s 97.6 0.0015 3.2E-08 65.2 14.3 107 323-440 179-334 (381)
412 KOG3987 Uncharacterized conser 97.6 4.1E-05 8.8E-10 68.5 2.9 135 322-485 97-260 (288)
413 TIGR01444 fkbM_fam methyltrans 97.6 0.00027 5.8E-09 61.7 8.1 59 338-400 1-60 (143)
414 COG0293 FtsJ 23S rRNA methylas 97.6 0.0014 3.1E-08 59.8 12.7 141 319-486 29-184 (205)
415 PF04816 DUF633: Family of unk 97.5 0.00081 1.8E-08 62.3 11.0 120 339-483 1-122 (205)
416 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00039 8.4E-09 67.9 8.9 63 329-397 13-77 (296)
417 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00051 1.1E-08 66.6 9.8 72 65-139 20-91 (262)
418 PF01564 Spermine_synth: Sperm 97.5 0.0011 2.3E-08 63.6 11.8 132 335-482 76-217 (246)
419 KOG1661 Protein-L-isoaspartate 97.5 0.00021 4.5E-09 64.5 6.3 76 73-152 80-168 (237)
420 PHA01634 hypothetical protein 97.5 0.00048 1E-08 56.8 7.8 72 334-419 27-98 (156)
421 PF01269 Fibrillarin: Fibrilla 97.5 0.0022 4.8E-08 59.0 12.7 152 313-485 47-212 (229)
422 KOG0820 Ribosomal RNA adenine 97.5 0.00069 1.5E-08 63.6 9.4 96 311-420 35-130 (315)
423 PF02527 GidB: rRNA small subu 97.5 0.0012 2.5E-08 60.1 10.6 123 338-485 51-175 (184)
424 PRK11933 yebU rRNA (cytosine-C 97.5 0.00025 5.5E-09 73.9 7.0 78 72-152 110-189 (470)
425 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.0014 3.1E-08 62.4 11.4 155 42-198 19-238 (256)
426 KOG1331 Predicted methyltransf 97.4 0.00021 4.6E-09 67.7 5.5 98 42-152 11-109 (293)
427 KOG1663 O-methyltransferase [S 97.4 0.00096 2.1E-08 61.3 9.5 110 333-459 71-183 (237)
428 KOG2915 tRNA(1-methyladenosine 97.4 0.0022 4.7E-08 60.3 11.8 136 326-483 96-233 (314)
429 KOG1709 Guanidinoacetate methy 97.4 0.0011 2.3E-08 60.1 9.2 123 314-461 83-208 (271)
430 PF13679 Methyltransf_32: Meth 97.4 0.00031 6.7E-09 61.3 5.8 73 74-152 24-105 (141)
431 KOG2730 Methylase [General fun 97.4 0.00011 2.5E-09 66.5 3.1 60 75-136 94-155 (263)
432 PRK10611 chemotaxis methyltran 97.4 0.00032 6.8E-09 68.3 6.4 75 75-152 115-229 (287)
433 COG0421 SpeE Spermidine syntha 97.4 0.0029 6.3E-08 61.5 13.0 106 337-458 78-189 (282)
434 PF09243 Rsm22: Mitochondrial 97.4 0.00041 9E-09 67.6 6.9 127 64-195 22-164 (274)
435 PF07942 N2227: N2227-like pro 97.4 0.0023 5.1E-08 61.4 11.7 50 63-114 40-93 (270)
436 COG0220 Predicted S-adenosylme 97.3 0.0029 6.2E-08 59.5 12.1 107 337-461 50-166 (227)
437 PF09243 Rsm22: Mitochondrial 97.3 0.0022 4.8E-08 62.5 11.8 126 333-481 31-164 (274)
438 TIGR02987 met_A_Alw26 type II 97.3 0.0014 3E-08 70.3 11.3 48 335-382 31-87 (524)
439 PF07091 FmrO: Ribosomal RNA m 97.3 0.00078 1.7E-08 63.2 8.1 74 74-152 104-177 (251)
440 COG0030 KsgA Dimethyladenosine 97.3 0.00097 2.1E-08 63.4 8.8 89 324-426 19-107 (259)
441 COG0421 SpeE Spermidine syntha 97.3 0.00044 9.5E-09 67.1 6.5 76 74-152 75-155 (282)
442 PRK00536 speE spermidine synth 97.3 0.0012 2.5E-08 63.4 9.0 111 70-195 67-195 (262)
443 PF03059 NAS: Nicotianamine sy 97.3 0.00055 1.2E-08 65.9 6.6 74 75-152 120-198 (276)
444 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00039 8.4E-09 69.4 5.7 89 61-152 32-131 (311)
445 PF01739 CheR: CheR methyltran 97.2 0.00092 2E-08 61.5 7.3 74 75-152 31-142 (196)
446 KOG3115 Methyltransferase-like 97.2 0.00079 1.7E-08 60.3 6.4 61 75-135 60-128 (249)
447 PRK11760 putative 23S rRNA C24 97.2 0.00089 1.9E-08 65.8 7.4 67 74-152 210-276 (357)
448 PF10672 Methyltrans_SAM: S-ad 97.2 0.0004 8.7E-09 67.4 4.9 117 74-192 122-257 (286)
449 PRK10742 putative methyltransf 97.2 0.0019 4E-08 60.9 8.9 90 334-431 85-181 (250)
450 PF07942 N2227: N2227-like pro 97.2 0.0094 2E-07 57.3 13.8 134 334-483 55-240 (270)
451 PRK11760 putative 23S rRNA C24 97.2 0.0015 3.4E-08 64.1 8.5 85 333-440 209-293 (357)
452 COG2384 Predicted SAM-dependen 97.1 0.0033 7.2E-08 57.6 9.6 115 75-200 16-144 (226)
453 PF11968 DUF3321: Putative met 97.1 0.0048 1E-07 56.6 10.4 134 318-485 30-181 (219)
454 PF03602 Cons_hypoth95: Conser 97.1 0.00032 7E-09 63.8 2.9 76 75-152 42-120 (183)
455 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.00072 1.6E-08 67.5 5.3 91 322-423 37-135 (311)
456 PF00398 RrnaAD: Ribosomal RNA 97.0 0.0016 3.6E-08 63.1 7.4 103 322-438 17-119 (262)
457 PF13679 Methyltransf_32: Meth 97.0 0.0026 5.7E-08 55.4 8.0 49 334-382 24-77 (141)
458 PF03141 Methyltransf_29: Puta 97.0 0.0017 3.7E-08 66.5 7.5 128 311-463 89-223 (506)
459 KOG1501 Arginine N-methyltrans 97.0 0.0017 3.8E-08 64.6 6.7 48 338-385 69-116 (636)
460 COG0144 Sun tRNA and rRNA cyto 96.9 0.012 2.6E-07 59.5 12.8 144 319-483 144-315 (355)
461 COG2520 Predicted methyltransf 96.9 0.0055 1.2E-07 60.8 9.7 74 74-152 187-262 (341)
462 COG0357 GidB Predicted S-adeno 96.9 0.015 3.3E-07 53.9 11.9 129 336-489 68-199 (215)
463 PF01795 Methyltransf_5: MraW 96.9 0.002 4.3E-08 63.0 6.4 91 62-152 7-99 (310)
464 COG0144 Sun tRNA and rRNA cyto 96.9 0.0068 1.5E-07 61.3 10.4 81 70-152 151-235 (355)
465 COG4076 Predicted RNA methylas 96.9 0.0019 4.2E-08 57.1 5.5 70 75-152 32-102 (252)
466 COG0293 FtsJ 23S rRNA methylas 96.8 0.014 3.1E-07 53.4 11.1 113 74-198 44-182 (205)
467 cd00315 Cyt_C5_DNA_methylase C 96.8 0.015 3.2E-07 56.8 11.9 135 338-495 2-153 (275)
468 COG0742 N6-adenine-specific me 96.8 0.0032 7E-08 56.7 6.5 77 74-152 42-120 (187)
469 COG0500 SmtA SAM-dependent met 96.8 0.016 3.4E-07 50.7 11.1 67 79-150 52-123 (257)
470 COG3897 Predicted methyltransf 96.8 0.0019 4.2E-08 57.8 4.8 70 75-152 79-148 (218)
471 PF01728 FtsJ: FtsJ-like methy 96.8 0.00047 1E-08 62.9 1.0 69 74-152 22-97 (181)
472 PF01564 Spermine_synth: Sperm 96.8 0.0026 5.7E-08 60.9 6.0 77 74-152 75-156 (246)
473 COG1889 NOP1 Fibrillarin-like 96.8 0.077 1.7E-06 48.0 14.7 150 314-485 51-214 (231)
474 PF05971 Methyltransf_10: Prot 96.8 0.0058 1.3E-07 59.5 8.4 77 76-152 103-183 (299)
475 COG0500 SmtA SAM-dependent met 96.8 0.026 5.7E-07 49.3 12.3 104 339-462 52-158 (257)
476 COG2384 Predicted SAM-dependen 96.7 0.031 6.6E-07 51.4 12.1 123 335-482 16-140 (226)
477 TIGR02987 met_A_Alw26 type II 96.7 0.0023 4.9E-08 68.7 5.8 78 75-152 31-118 (524)
478 PF11968 DUF3321: Putative met 96.7 0.0043 9.2E-08 56.9 6.4 100 76-198 52-180 (219)
479 COG0275 Predicted S-adenosylme 96.7 0.007 1.5E-07 58.2 8.1 92 61-152 9-102 (314)
480 TIGR00308 TRM1 tRNA(guanine-26 96.6 0.0031 6.7E-08 64.0 5.9 74 76-152 45-120 (374)
481 KOG3987 Uncharacterized conser 96.6 0.00014 3E-09 65.1 -3.2 42 75-118 112-153 (288)
482 KOG2730 Methylase [General fun 96.5 0.0034 7.5E-08 57.1 4.5 91 321-421 83-173 (263)
483 COG4262 Predicted spermidine s 96.5 0.058 1.2E-06 53.0 13.0 133 335-483 289-434 (508)
484 COG0116 Predicted N6-adenine-s 96.5 0.0088 1.9E-07 59.8 7.7 75 74-152 190-305 (381)
485 PF08123 DOT1: Histone methyla 96.4 0.0072 1.6E-07 56.0 6.3 81 71-152 38-128 (205)
486 COG5459 Predicted rRNA methyla 96.4 0.012 2.5E-07 57.4 7.6 111 332-461 110-227 (484)
487 COG1352 CheR Methylase of chem 96.3 0.017 3.7E-07 55.6 8.3 98 52-153 67-209 (268)
488 TIGR03439 methyl_EasF probable 96.3 0.0095 2.1E-07 59.0 6.7 62 74-135 75-143 (319)
489 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.2 0.0063 1.4E-07 59.6 5.2 80 71-152 81-162 (283)
490 KOG1709 Guanidinoacetate methy 96.2 0.014 3.1E-07 53.0 6.7 97 74-178 100-206 (271)
491 KOG1663 O-methyltransferase [S 96.1 0.015 3.2E-07 53.7 6.7 79 74-152 72-155 (237)
492 KOG1269 SAM-dependent methyltr 96.1 0.013 2.8E-07 59.0 6.7 106 333-457 108-213 (364)
493 COG1889 NOP1 Fibrillarin-like 96.1 0.098 2.1E-06 47.3 11.3 80 71-152 72-151 (231)
494 TIGR03439 methyl_EasF probable 95.9 0.056 1.2E-06 53.6 9.9 113 335-461 76-199 (319)
495 COG4262 Predicted spermidine s 95.7 0.029 6.4E-07 55.0 7.0 75 74-152 288-371 (508)
496 PRK10742 putative methyltransf 95.7 0.028 6.2E-07 53.0 6.7 74 74-152 85-170 (250)
497 COG3129 Predicted SAM-dependen 95.5 0.044 9.6E-07 50.4 6.8 99 323-426 64-166 (292)
498 PF01861 DUF43: Protein of unk 95.4 0.069 1.5E-06 50.0 8.1 118 74-199 43-178 (243)
499 KOG3178 Hydroxyindole-O-methyl 95.4 0.04 8.6E-07 54.3 6.6 65 76-152 178-242 (342)
500 KOG3178 Hydroxyindole-O-methyl 95.3 0.11 2.3E-06 51.3 9.4 96 337-460 179-276 (342)
No 1
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=6e-35 Score=262.67 Aligned_cols=216 Identities=45% Similarity=0.782 Sum_probs=199.0
Q ss_pred CCcccccchhhhccCCCCCCCChHHHHHHHHHhhHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCC--eEEEECCCc
Q 009871 9 AGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK--DVLEVGCGA 86 (523)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~--~iLDiGcG~ 86 (523)
+..++.+.+...+..+....+..++..+|...+.+|||.||..|.++||++|+||.++|+++++..+.. +||+||||.
T Consensus 3 wske~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGv 82 (264)
T KOG2361|consen 3 WSKEEEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGV 82 (264)
T ss_pred cCHHHHHHHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCC
Confidence 445556666777778888889999999999999999999999999999999999999999998865555 899999999
Q ss_pred cccHHHHHhhCCC--CEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE------------
Q 009871 87 GNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM------------ 152 (523)
Q Consensus 87 G~~~~~l~~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~------------ 152 (523)
|.+..++++..++ ..|+++|+||.+|+..+++..+...++...+.|+...++..+...+++|+|++
T Consensus 83 GNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~ 162 (264)
T KOG2361|consen 83 GNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKM 162 (264)
T ss_pred CcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHH
Confidence 9999999999776 99999999999999999998888888999999999887777888999999998
Q ss_pred -----------------------------ccccccceeeecceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeEeee
Q 009871 153 -----------------------------ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQ 203 (523)
Q Consensus 153 -----------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~ 203 (523)
.|| .+.+++.+++|+++||++.|||+.+++.+++.++||..++..+.++.
T Consensus 163 ~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl 241 (264)
T KOG2361|consen 163 QSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF-KKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRL 241 (264)
T ss_pred HHHHHHHHHHhCCCcEEEEeecccchHHHHhc-cCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeee
Confidence 677 68889999999999999999999999999999999999999999999
Q ss_pred eeecccCccceeEEEEEEEEec
Q 009871 204 VENRARELVMNRRWVQAVFCSS 225 (523)
Q Consensus 204 ~~~~~~~~~~~r~~~~~~~~~~ 225 (523)
.+||++++.|.|+|+|++|+++
T Consensus 242 ~vNr~k~lkm~Rvwvq~~f~k~ 263 (264)
T KOG2361|consen 242 LVNRKKQLKMYRVWVQAKFQKP 263 (264)
T ss_pred eeehhccCccceEEEEEEeecC
Confidence 9999999999999999999987
No 2
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.94 E-value=2.8e-26 Score=207.40 Aligned_cols=154 Identities=30% Similarity=0.409 Sum_probs=102.8
Q ss_pred CCCcccccchhHHHHHHHHhcC------CCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhc
Q 009871 309 CRSTGLMLWESAHLMAAVLARN------PTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN 381 (523)
Q Consensus 309 ~~~~G~~~W~~a~~la~~l~~~------~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n 381 (523)
..++|..+|+++.+|++||..+ ...+++++|||||||+|..++.+++. ++.+|++||+++ ++++++.|++.|
T Consensus 13 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N 91 (173)
T PF10294_consen 13 GDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELN 91 (173)
T ss_dssp ----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT
T ss_pred ccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhc
Confidence 4689999999999999999984 56789999999999999666666666 678999999988 999999999999
Q ss_pred CCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 382 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 382 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+. .....+.+..++|++..... .+.+.+||+|+++||+|+.+.+++|++++.+++ ++++.+++++..
T Consensus 92 ~~-~~~~~v~v~~L~Wg~~~~~~---~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll---------~~~~~vl~~~~~ 158 (173)
T PF10294_consen 92 GS-LLDGRVSVRPLDWGDELDSD---LLEPHSFDVILASDVLYDEELFEPLVRTLKRLL---------KPNGKVLLAYKR 158 (173)
T ss_dssp ---------EEEE--TTS-HHHH---HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHB---------TT-TTEEEEEE-
T ss_pred cc-cccccccCcEEEecCccccc---ccccccCCEEEEecccchHHHHHHHHHHHHHHh---------CCCCEEEEEeCE
Confidence 84 22368899999999852211 234568999999999999999999999999999 456669999999
Q ss_pred cCCChhHHHHHHHHc
Q 009871 462 RQVDEPSMLSAATQC 476 (523)
Q Consensus 462 r~~~~~~~~~~~~~~ 476 (523)
|+.....|++.++++
T Consensus 159 R~~~~~~F~~~~~k~ 173 (173)
T PF10294_consen 159 RRKSEQEFFDRLKKH 173 (173)
T ss_dssp S-TGGCHHHHHH---
T ss_pred ecHHHHHHHHHhhhC
Confidence 887778899998763
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.93 E-value=5.2e-23 Score=217.08 Aligned_cols=336 Identities=17% Similarity=0.131 Sum_probs=200.9
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
++..++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++... ...++.++++|+...++ ++++++||+|
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~--~~~~~~fD~I 107 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDL--NISDGSVDLI 107 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc-cCCceEEEEeccccccc--CCCCCCEEEE
Confidence 333456799999999999999999884 469999999999998876432 23578999999974332 4677899999
Q ss_pred EE-------------------ccccccceeeec--ceEEec-C----CeEEEeeCHHHHHHHHHhCCCcEEEEEeEeeee
Q 009871 151 TM-------------------ERLTGKDQKISE--NFYVRG-D----GTRAFYFSNDFLTSLFKENGFDVEELGLCCKQV 204 (523)
Q Consensus 151 ~~-------------------~~~~~~~~~~~~--~~~~~~-~----g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~~ 204 (523)
++ .+.+++++.+.- +.+... + ....++.+..++.+++.++||.........-..
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 187 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSL 187 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEE
Confidence 99 222233333210 000000 0 011223467899999999998864433221110
Q ss_pred eecccCccceeEEEEEEEEecCCCCCCccccchhhhhccccccchhHhhhhhccCCCCcccccchhHHHhhcCCCCCCCc
Q 009871 205 ENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDN 284 (523)
Q Consensus 205 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 284 (523)
. -.++...|.++........+.. ..++..+. .-...+++++ ......+ --+..+|+..
T Consensus 188 ~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~-~y~~~~i--~~~~~f~g~~----- 245 (475)
T PLN02336 188 V---------GCKCIGAYVKNKKNQNQICWLW--QKVSSTND---KGFQRFLDNV-QYKSSGI--LRYERVFGEG----- 245 (475)
T ss_pred E---------EeechhhhhhccCCcceEEEEE--EeecCCcc---hhHHHHhhhh-ccccccH--HHHHHHhCCC-----
Confidence 0 1122333444444333331111 11111110 0011111110 0000000 0011111110
Q ss_pred eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEE
Q 009871 285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVAT 364 (523)
Q Consensus 285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~ 364 (523)
..++.+..-.+.+.+.....++.+|||+|||+|.++..++.....+|+++
T Consensus 246 ------------------------------~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv 295 (475)
T PLN02336 246 ------------------------------FVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGI 295 (475)
T ss_pred ------------------------------CCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEE
Confidence 01111122223333333345678999999999988888887655689999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccC
Q 009871 365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSN 444 (523)
Q Consensus 365 D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~ 444 (523)
|+|+.+++.+++|.... ..++.+...|+... ++++++||+|++.+++++......+++.+.++|
T Consensus 296 DiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~-------~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~L---- 359 (475)
T PLN02336 296 DLSVNMISFALERAIGR-----KCSVEFEVADCTKK-------TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWL---- 359 (475)
T ss_pred ECCHHHHHHHHHHhhcC-----CCceEEEEcCcccC-------CCCCCCEEEEEECCcccccCCHHHHHHHHHHHc----
Confidence 99999999999887521 13567766666543 233568999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEeecC-------------------CChhHHHHHHHHcCCEEEEEc
Q 009871 445 KSLREDQQPAFILCHIFRQ-------------------VDEPSMLSAATQCGFRLVDKW 484 (523)
Q Consensus 445 ~~~~~~~~g~~~l~~~~r~-------------------~~~~~~~~~~~~~gf~~~~~~ 484 (523)
+|||.+++....+. .+...+.+.++++||++..+.
T Consensus 360 -----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 360 -----KPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred -----CCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 77999998764321 123456677888999987654
No 4
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6e-18 Score=142.90 Aligned_cols=156 Identities=22% Similarity=0.355 Sum_probs=126.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871 313 GLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 390 (523)
Q Consensus 313 G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v 390 (523)
...+||+..+|+.++++++..++|++|||||.|--++++++.+.. ...|..||.+++.++..++-+..|..+.. .
T Consensus 7 nvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-t-- 83 (201)
T KOG3201|consen 7 NVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL-T-- 83 (201)
T ss_pred cEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc-c--
Confidence 357999999999999999999999999999999766777776653 45899999999999999998888855421 2
Q ss_pred EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871 391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 470 (523)
Q Consensus 391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~ 470 (523)
.+..+.|-...... ......||+|+++||++..+.+..|+++++.+| +|.|..++..++|..+...|.
T Consensus 84 sc~vlrw~~~~aqs---q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL---------~p~g~Al~fsPRRg~sL~kF~ 151 (201)
T KOG3201|consen 84 SCCVLRWLIWGAQS---QQEQHTFDIILAADCLFFDEHHESLVDTIKSLL---------RPSGRALLFSPRRGQSLQKFL 151 (201)
T ss_pred eehhhHHHHhhhHH---HHhhCcccEEEeccchhHHHHHHHHHHHHHHHh---------CcccceeEecCcccchHHHHH
Confidence 33334443221111 122458999999999999999999999999999 678888888888888899999
Q ss_pred HHHHHcCCEEEEE
Q 009871 471 SAATQCGFRLVDK 483 (523)
Q Consensus 471 ~~~~~~gf~~~~~ 483 (523)
+.+...||.+...
T Consensus 152 de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 152 DEVGTVGFTVCLE 164 (201)
T ss_pred HHHHhceeEEEec
Confidence 9999999998653
No 5
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.70 E-value=4.4e-15 Score=162.46 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=117.5
Q ss_pred EEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEc
Q 009871 286 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 365 (523)
Q Consensus 286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D 365 (523)
.+.+..+|..+.|..... ..||.. ++- ...-.++... .++++|||||||||+++..+++.|+.+|+++|
T Consensus 500 ~~~v~e~g~~f~v~~~~~------~~tG~f-lDq-r~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD 568 (702)
T PRK11783 500 FLEVTEYGAKLLVNLTDY------LDTGLF-LDH-RPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALGGAKSTTTVD 568 (702)
T ss_pred eEEEEECCEEEEEEcCCC------CcceEC-HHH-HHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEe
Confidence 344666777776664322 345632 211 1122333322 36789999999999999998888888999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC-----------CChHHHHH
Q 009871 366 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----------EAILPLFA 434 (523)
Q Consensus 366 ~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----------~~~~~l~~ 434 (523)
+|+.+++.+++|+..|++.. .++.+...|..+. +..+ ..+||+|++....+.. ..+..++.
T Consensus 569 ~s~~al~~a~~N~~~ng~~~--~~v~~i~~D~~~~-----l~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~ 640 (702)
T PRK11783 569 MSNTYLEWAERNFALNGLSG--RQHRLIQADCLAW-----LKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIK 640 (702)
T ss_pred CCHHHHHHHHHHHHHhCCCc--cceEEEEccHHHH-----HHHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHH
Confidence 99999999999999998742 2456655554321 1112 4589999996443321 23567888
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871 435 TAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 435 ~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
.+.++| +|||.++++...+.... ..+.+.+.|+.+..+...
T Consensus 641 ~a~~lL---------~~gG~l~~~~~~~~~~~--~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 641 DAKRLL---------RPGGTLYFSNNKRGFKM--DEEGLAKLGLKAEEITAK 681 (702)
T ss_pred HHHHHc---------CCCCEEEEEeCCccCCh--hHHHHHhCCCeEEEEecC
Confidence 888888 67999999887766554 377778899999988763
No 6
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=6.8e-16 Score=147.74 Aligned_cols=160 Identities=25% Similarity=0.263 Sum_probs=123.9
Q ss_pred ceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHH
Q 009871 294 RSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDL 373 (523)
Q Consensus 294 ~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~ 373 (523)
..+.|++.++. ..|.-..|++.+..++|.+.. .++++|||+|||||.+++.+++.|+.+|+++|+||.+++.
T Consensus 129 ~~~~i~lDPGl------AFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a 200 (300)
T COG2264 129 DELNIELDPGL------AFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA 200 (300)
T ss_pred CceEEEEcccc------ccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH
Confidence 35566655543 445557788888889998765 3899999999999999998889999999999999999999
Q ss_pred HHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCc
Q 009871 374 LAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQP 453 (523)
Q Consensus 374 ~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g 453 (523)
++.|+..|++.. .+... +..... ....++||+|+++ --.+.+..|...+..++ +|+|
T Consensus 201 a~eNa~~N~v~~---~~~~~---~~~~~~-----~~~~~~~DvIVAN---ILA~vl~~La~~~~~~l---------kpgg 257 (300)
T COG2264 201 ARENARLNGVEL---LVQAK---GFLLLE-----VPENGPFDVIVAN---ILAEVLVELAPDIKRLL---------KPGG 257 (300)
T ss_pred HHHHHHHcCCch---hhhcc---cccchh-----hcccCcccEEEeh---hhHHHHHHHHHHHHHHc---------CCCc
Confidence 999999999863 11111 111111 1223599999998 35566778888888899 7899
Q ss_pred EEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 454 AFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 454 ~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
.++++...... .+.+.+.+.+.||.+..++.
T Consensus 258 ~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 258 RLILSGILEDQ-AESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred eEEEEeehHhH-HHHHHHHHHhCCCeEeEEEe
Confidence 99999987544 56788889999999998876
No 7
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.68 E-value=4.4e-15 Score=156.13 Aligned_cols=297 Identities=14% Similarity=0.155 Sum_probs=175.4
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
+.+|||+|||+|.++..++...|+++|+|+|+|+.|++.|+++.... ..+++++++|+.. .+++++||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-----hCcCCCccEEEEC
Confidence 46899999999999999998888899999999999999999986533 2478999999863 234568999999
Q ss_pred c---------ccccccee------ee-------------c--ceEEecCCeEEEe---eCHHHHHHHHHhCCCcEEEEEe
Q 009871 153 E---------RLTGKDQK------IS-------------E--NFYVRGDGTRAFY---FSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 153 ~---------~~~~~~~~------~~-------------~--~~~~~~~g~~~~~---~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
. .+...... +. . ..+++++|.+++- ...+.+.+++.+.||..+.+..
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEe
Confidence 0 00000000 00 0 1256778877652 2566788889989987655421
Q ss_pred EeeeeeecccCccceeEEE---EEEEEecCCCCCCccccchhhhhccccccchhHhhhhhccCCCCcccccchhHHHhhc
Q 009871 200 CCKQVENRARELVMNRRWV---QAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMF 276 (523)
Q Consensus 200 ~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~f 276 (523)
+...+-+.+ +..+.+......+. .++.++. .+. +..+..|
T Consensus 294 ----------D~~g~~R~v~~~~~~~~rs~~rr~g~-------~~~~~q~---~~~----------------e~~~p~~- 336 (506)
T PRK01544 294 ----------DLQGHSRVILISPINLNRSYARRIGK-------SLSGVQQ---NLL----------------DNELPKY- 336 (506)
T ss_pred ----------cCCCCceEEEeccccCCcceeccCCC-------CCCHHHH---HHH----------------Hhhhhhh-
Confidence 111111222 22222211111110 0111110 000 1111000
Q ss_pred CCCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc
Q 009871 277 GLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG 356 (523)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~ 356 (523)
+. .|+. +. ...+..+||||||.|.....+|..
T Consensus 337 ------------------------------------~i-~~ek------lf-----~~~~p~~lEIG~G~G~~~~~~A~~ 368 (506)
T PRK01544 337 ------------------------------------LF-SKEK------LV-----NEKRKVFLEIGFGMGEHFINQAKM 368 (506)
T ss_pred ------------------------------------CC-CHHH------hC-----CCCCceEEEECCCchHHHHHHHHh
Confidence 00 0000 00 013568999999999988888888
Q ss_pred CCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEc--cccCCCC------
Q 009871 357 SAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT--DVSYIPE------ 427 (523)
Q Consensus 357 ~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~--d~~y~~~------ 427 (523)
.+. .++|+|+....+..+.+.+...++ .++.+...+.. .+. ..++++++|-|... |.-.-..
T Consensus 369 ~p~~~~iGiE~~~~~~~~~~~~~~~~~l----~N~~~~~~~~~---~~~--~~~~~~sv~~i~i~FPDPWpKkrh~krRl 439 (506)
T PRK01544 369 NPDALFIGVEVYLNGVANVLKLAGEQNI----TNFLLFPNNLD---LIL--NDLPNNSLDGIYILFPDPWIKNKQKKKRI 439 (506)
T ss_pred CCCCCEEEEEeeHHHHHHHHHHHHHcCC----CeEEEEcCCHH---HHH--HhcCcccccEEEEECCCCCCCCCCccccc
Confidence 654 899999999888877777666554 34444332221 111 13456789988865 3332211
Q ss_pred ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEE
Q 009871 428 AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLV 481 (523)
Q Consensus 428 ~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~ 481 (523)
.-+.+++.+.++| +|||.+.+..-....-. ..++.+.+.+ |+..
T Consensus 440 ~~~~fl~~~~~~L---------k~gG~i~~~TD~~~y~~-~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 440 FNKERLKILQDKL---------KDNGNLVFASDIENYFY-EAIELIQQNGNFEII 484 (506)
T ss_pred cCHHHHHHHHHhc---------CCCCEEEEEcCCHHHHH-HHHHHHHhCCCeEec
Confidence 5678999999999 77999998764322111 2244445554 6654
No 8
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.67 E-value=6.9e-16 Score=149.56 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=118.1
Q ss_pred CceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHH
Q 009871 293 DRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALD 372 (523)
Q Consensus 293 ~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~ 372 (523)
+..+.|...++. ..|.-..+++.+..++|.... .++++|||+|||||.+++.+++.|+++|+++|++|.+++
T Consensus 127 ~~~~~I~idPg~------AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~ 198 (295)
T PF06325_consen 127 PDEIVIEIDPGM------AFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVE 198 (295)
T ss_dssp TTSEEEEESTTS------SS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHH
T ss_pred CCcEEEEECCCC------cccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHH
Confidence 344555554443 566668899999999998874 578899999999999988888899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCC
Q 009871 373 LLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQ 452 (523)
Q Consensus 373 ~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 452 (523)
.+++|+..|++. .++.+. ... +....+||+|+++ -..+.+..++..+.++| +|+
T Consensus 199 ~a~~N~~~N~~~---~~~~v~----~~~-------~~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l---------~~~ 252 (295)
T PF06325_consen 199 AARENAELNGVE---DRIEVS----LSE-------DLVEGKFDLVVAN---ILADVLLELAPDIASLL---------KPG 252 (295)
T ss_dssp HHHHHHHHTT-T---TCEEES----CTS-------CTCCS-EEEEEEE---S-HHHHHHHHHHCHHHE---------EEE
T ss_pred HHHHHHHHcCCC---eeEEEE----Eec-------ccccccCCEEEEC---CCHHHHHHHHHHHHHhh---------CCC
Confidence 999999999997 344432 111 1124799999998 44555677888888888 679
Q ss_pred cEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 453 PAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 453 g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
|.++++.... ...+.+.+.+++ ||++.+...
T Consensus 253 G~lIlSGIl~-~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 253 GYLILSGILE-EQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp EEEEEEEEEG-GGHHHHHHHHHT-TEEEEEEEE
T ss_pred CEEEEccccH-HHHHHHHHHHHC-CCEEEEEEE
Confidence 9999998874 345678888866 999987654
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=2.1e-15 Score=148.77 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=112.2
Q ss_pred CCCCCChHHHHHHHHHhhHHHHH------HHHhcccccccchhhhHHHHhhh---hcCCCCCeEEEECCCccccHHHHHh
Q 009871 25 PNTGVSPFWRDKYEREAKKYWDL------FYKRHQDRFFKDRHYLDKEWGRY---FSGAGRKDVLEVGCGAGNTIFPLIA 95 (523)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~Wd~------~y~~~~~~f~~~~~~l~~~~~~~---~~~~~~~~iLDiGcG~G~~~~~l~~ 95 (523)
....+++.+-.+|++.+..||+. ++.-+..+...-+..+.+.+... ....++.+|||||||+|.++..|++
T Consensus 72 ~~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~ 151 (322)
T PLN02396 72 TTTSLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR 151 (322)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHH
Confidence 33467888889999999999983 22222221111111122222111 1123567999999999999999987
Q ss_pred hCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE-----------------cccc
Q 009871 96 AYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-----------------ERLT 156 (523)
Q Consensus 96 ~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-----------------~~~~ 156 (523)
. +++|+|||+|++|++.|+++.... ..+++++++|+.++ ++++++||+|++ .+++
T Consensus 152 ~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l----~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 152 M--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL----ADEGRKFDAVLSLEVIEHVANPAEFCKSLSALT 225 (322)
T ss_pred c--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh----hhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHc
Confidence 5 678999999999999999875432 24799999999876 566789999999 3444
Q ss_pred ccceeeecceE-------------------EecCCeE--EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 157 GKDQKISENFY-------------------VRGDGTR--AFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 157 ~~~~~~~~~~~-------------------~~~~g~~--~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
++++.+.-... ..+.|+. ..+++++++..+++++||+++++.
T Consensus 226 kPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 226 IPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred CCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 55554431100 0122332 235799999999999999987663
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=6.1e-15 Score=137.76 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=95.7
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+.....++.+|||||||||..+..+++..+.++|+|+|+|+.|++.|+++.... ..+++|+++|++++ ||++++|
T Consensus 45 ~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L----Pf~D~sF 120 (238)
T COG2226 45 SLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL----PFPDNSF 120 (238)
T ss_pred HhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC----CCCCCcc
Confidence 333334789999999999999999999977899999999999999999987542 23499999999999 8999999
Q ss_pred eEEEE-----------------ccccccceeeecceEEecCC--------------------eEE---------------
Q 009871 148 DIVTM-----------------ERLTGKDQKISENFYVRGDG--------------------TRA--------------- 175 (523)
Q Consensus 148 D~V~~-----------------~~~~~~~~~~~~~~~~~~~g--------------------~~~--------------- 175 (523)
|+|++ .|++++++++....+.++.. .+.
T Consensus 121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 99999 56666666544322222221 110
Q ss_pred EeeCHHHHHHHHHhCCCcEEE
Q 009871 176 FYFSNDFLTSLFKENGFDVEE 196 (523)
Q Consensus 176 ~~~~~~~l~~ll~~~Gf~~~~ 196 (523)
.+.+.+++.+.++++||..+.
T Consensus 201 ~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 201 RFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hCCCHHHHHHHHHhcCceEEe
Confidence 024678899999999999766
No 11
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.63 E-value=7.1e-15 Score=132.95 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=106.2
Q ss_pred EEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHH
Q 009871 296 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLL 374 (523)
Q Consensus 296 ~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~ 374 (523)
+++.+.+++++.. .+=.++.+|++++..+ ++.+|||||||+|.++..+++.++. +|+++|+++.+++.+
T Consensus 2 ~~~~~~~gvFs~~------~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a 71 (170)
T PF05175_consen 2 LEFITHPGVFSPP------RLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA 71 (170)
T ss_dssp EEEEEETTSTTTT------SHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred EEEEECCCeeCCC------CCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 5667667666422 1224677888888765 5679999999999999999988766 899999999999999
Q ss_pred HHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCC
Q 009871 375 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLRE 449 (523)
Q Consensus 375 ~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~ 449 (523)
++|+..|+.. . +.+...|+.+. ..+.+||+|+++..++... ....+++...++|
T Consensus 72 ~~n~~~n~~~---~-v~~~~~d~~~~--------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~L--------- 130 (170)
T PF05175_consen 72 KRNAERNGLE---N-VEVVQSDLFEA--------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYL--------- 130 (170)
T ss_dssp HHHHHHTTCT---T-EEEEESSTTTT--------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHE---------
T ss_pred HHHHHhcCcc---c-ccccccccccc--------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhc---------
Confidence 9999999885 2 77776666543 2357999999998876654 3788899999999
Q ss_pred CCCcEEEEEEeecCCChhHH
Q 009871 450 DQQPAFILCHIFRQVDEPSM 469 (523)
Q Consensus 450 ~~~g~~~l~~~~r~~~~~~~ 469 (523)
+|+|.++++... .......
T Consensus 131 k~~G~l~lv~~~-~~~~~~~ 149 (170)
T PF05175_consen 131 KPGGRLFLVINS-HLGYERL 149 (170)
T ss_dssp EEEEEEEEEEET-TSCHHHH
T ss_pred cCCCEEEEEeec-CCChHHH
Confidence 679999887764 3343333
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=1e-14 Score=136.08 Aligned_cols=160 Identities=15% Similarity=0.134 Sum_probs=124.2
Q ss_pred cCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHH
Q 009871 292 RDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIA 370 (523)
Q Consensus 292 ~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~ 370 (523)
.+..+.|.+... |...=-.+++|++|..- ...++|||||||+|.+++++|++. ..+|+++|+++++
T Consensus 14 ~~~~~~I~q~~~---------~~~~~~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~ 80 (248)
T COG4123 14 TFKQFFIIQDRC---------GFRYGTDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEA 80 (248)
T ss_pred cccceEEEeCCC---------ccccccHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHH
Confidence 345566665433 34444567889988732 247899999999999999999884 4799999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC------------------ChHHH
Q 009871 371 LDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPL 432 (523)
Q Consensus 371 l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l 432 (523)
.+.|++|++.|... .++++...|..+... .....+||+|+++...|... .++.+
T Consensus 81 a~~A~~nv~ln~l~---~ri~v~~~Di~~~~~-----~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~ 152 (248)
T COG4123 81 AEMAQRNVALNPLE---ERIQVIEADIKEFLK-----ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDL 152 (248)
T ss_pred HHHHHHHHHhCcch---hceeEehhhHHHhhh-----cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHH
Confidence 99999999999887 677777666544311 12234799999998887622 58999
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871 433 FATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 433 ~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~ 483 (523)
++...++| +++|.+.++++. ....++++.+++++|.+.++
T Consensus 153 i~~a~~~l---------k~~G~l~~V~r~--erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 153 IRAAAKLL---------KPGGRLAFVHRP--ERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred HHHHHHHc---------cCCCEEEEEecH--HHHHHHHHHHHhcCCCceEE
Confidence 99999999 779999998744 45567999999999999887
No 13
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=132.23 Aligned_cols=130 Identities=23% Similarity=0.306 Sum_probs=104.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc
Q 009871 310 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAK 389 (523)
Q Consensus 310 ~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 389 (523)
+.+++..|.+++.+|+|+..+|+..+|++|||+|+|+|..++..+..|++.|+++|++|..+..++.|+..|++.
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~----- 128 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS----- 128 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-----
Confidence 347789999999999999999999999999999999996666666669999999999999999999999999864
Q ss_pred eEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 390 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 390 v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
+.+...|... .+..||+|+++|++|+......++....++. ..|-.+++..+.|.
T Consensus 129 i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~---------~~g~~vlvgdp~R~ 183 (218)
T COG3897 129 ILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLA---------EAGAAVLVGDPGRA 183 (218)
T ss_pred eEEeeccccC----------CCcceeEEEeeceecCchHHHHHHHHHHHHH---------hCCCEEEEeCCCCC
Confidence 3333322221 3568999999999999999999999666665 23555555555554
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=1.9e-15 Score=142.91 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=57.0
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCc
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
+.+...++.+|||+|||||..+..++++ .++++|+|+|+|+.|++.|+++.... ..+++++++|++++ |+++++
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l----p~~d~s 116 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL----PFPDNS 116 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB------S-TT-
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh----cCCCCc
Confidence 3444567889999999999999999987 56789999999999999999976532 34899999999998 889999
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+|++
T Consensus 117 fD~v~~ 122 (233)
T PF01209_consen 117 FDAVTC 122 (233)
T ss_dssp EEEEEE
T ss_pred eeEEEH
Confidence 999999
No 15
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.7e-14 Score=132.79 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=112.9
Q ss_pred cCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHH
Q 009871 292 RDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIA 370 (523)
Q Consensus 292 ~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~ 370 (523)
.+.++++...+++|++..-+.| ++.|+++.....+.+|||||||.|.+++.+++..+ .+|+++|.|..+
T Consensus 125 ~~~~~~~~t~pGVFS~~~lD~G----------S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A 194 (300)
T COG2813 125 LGHELTFKTLPGVFSRDKLDKG----------SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA 194 (300)
T ss_pred ccCceEEEeCCCCCcCCCcChH----------HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence 4889999999999999988998 77777766555556999999999999999999864 689999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCC-h----HHHHHHHHHHhhccCC
Q 009871 371 LDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEA-I----LPLFATAKELTASSNK 445 (523)
Q Consensus 371 l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-~----~~l~~~l~~ll~~~~~ 445 (523)
++.+++|+..|++... .+..-+..+ +. .++||+||++..++.-.. . ..++....+.|
T Consensus 195 v~~ar~Nl~~N~~~~~----~v~~s~~~~--------~v-~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L----- 256 (300)
T COG2813 195 VESARKNLAANGVENT----EVWASNLYE--------PV-EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL----- 256 (300)
T ss_pred HHHHHHhHHHcCCCcc----EEEEecccc--------cc-cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh-----
Confidence 9999999999988631 222111111 12 238999999999987432 3 37999999999
Q ss_pred CCCCCCCcEEEEEEeecCCChhHHH
Q 009871 446 SLREDQQPAFILCHIFRQVDEPSML 470 (523)
Q Consensus 446 ~~~~~~~g~~~l~~~~r~~~~~~~~ 470 (523)
++||.+++... |...-+..+
T Consensus 257 ----~~gGeL~iVan-~~l~y~~~L 276 (300)
T COG2813 257 ----KPGGELWIVAN-RHLPYEKKL 276 (300)
T ss_pred ----ccCCEEEEEEc-CCCChHHHH
Confidence 67999988876 444443333
No 16
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=4e-14 Score=136.96 Aligned_cols=125 Identities=20% Similarity=0.255 Sum_probs=91.3
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccc----cCCCcEEEEEeeccCCccCCCCCC
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKD----FTETRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~ 144 (523)
.+...++.+|||+|||+|.++..++++ .+..+|+|+|+|++|++.|+++.. ....+++++++|+.++ |+++
T Consensus 68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p~~~ 143 (261)
T PLN02233 68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----PFDD 143 (261)
T ss_pred HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----CCCC
Confidence 344457889999999999999999887 456789999999999999987642 1235799999999987 7888
Q ss_pred CceeEEEE-----------------ccccccceeeecceEEecCC-------------------e-----E---------
Q 009871 145 SSIDIVTM-----------------ERLTGKDQKISENFYVRGDG-------------------T-----R--------- 174 (523)
Q Consensus 145 ~~fD~V~~-----------------~~~~~~~~~~~~~~~~~~~g-------------------~-----~--------- 174 (523)
++||+|++ .+.+++++++.-..+.++.. . .
T Consensus 144 ~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 144 CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999998 34445555542111111110 0 0
Q ss_pred EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 175 AFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 175 ~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
..+++.+++.++++++||+.++..
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEE
Confidence 124588999999999999987543
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.55 E-value=5e-15 Score=135.60 Aligned_cols=119 Identities=22% Similarity=0.230 Sum_probs=86.4
Q ss_pred CCCChHHHHHHHHHhhHHHHHHHHhcc-cccccch-hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEE
Q 009871 27 TGVSPFWRDKYEREAKKYWDLFYKRHQ-DRFFKDR-HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYA 104 (523)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Wd~~y~~~~-~~f~~~~-~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~g 104 (523)
..++..+.++|++.+..|||...+-.. ..+..-| .|+......... ..+.+|||||||-|.++..|++. ++.|+|
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~--Ga~Vtg 86 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARL--GASVTG 86 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHC--CCeeEE
Confidence 357788999999999999984211100 1111111 122222221111 47899999999999999999999 577999
Q ss_pred EeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 105 CDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 105 vD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+|+|+++|+.|+.++...+..+++.+..++++ ....++||+|+|
T Consensus 87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl----~~~~~~FDvV~c 130 (243)
T COG2227 87 IDASEKPIEVAKLHALESGVNIDYRQATVEDL----ASAGGQFDVVTC 130 (243)
T ss_pred ecCChHHHHHHHHhhhhccccccchhhhHHHH----HhcCCCccEEEE
Confidence 99999999999999877777788999888866 233489999999
No 18
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.54 E-value=3.2e-13 Score=135.59 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=110.0
Q ss_pred eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEE
Q 009871 285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVA 363 (523)
Q Consensus 285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~ 363 (523)
....+.+.+..++|...+++|+...-+.| +++|.++.....+.+|||||||+|.++..+++++ ..+|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~~~LD~G----------trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~ 257 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSRTGLDIG----------ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVF 257 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCCCCcChH----------HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEE
Confidence 45677788999999999999987766766 4445444333345699999999999998888875 459999
Q ss_pred EcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC-----ChHHHHHHHHH
Q 009871 364 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAKE 438 (523)
Q Consensus 364 ~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~l~~ 438 (523)
+|.|+.|++.+++|++.|+... ..++.+..-|... .+.+.+||+|+++..++... ....+++.+.+
T Consensus 258 vD~S~~Av~~A~~N~~~n~~~~-~~~v~~~~~D~l~--------~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~ 328 (378)
T PRK15001 258 VDESPMAVASSRLNVETNMPEA-LDRCEFMINNALS--------GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARR 328 (378)
T ss_pred EECCHHHHHHHHHHHHHcCccc-CceEEEEEccccc--------cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHH
Confidence 9999999999999999987531 1244443322211 12245899999987765432 34678888999
Q ss_pred HhhccCCCCCCCCCcEEEEEEee
Q 009871 439 LTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 439 ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
.| +|||.+++....
T Consensus 329 ~L---------kpGG~L~iV~nr 342 (378)
T PRK15001 329 CL---------KINGELYIVANR 342 (378)
T ss_pred hc---------ccCCEEEEEEec
Confidence 99 779999998643
No 19
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.54 E-value=5.7e-14 Score=131.11 Aligned_cols=164 Identities=24% Similarity=0.213 Sum_probs=119.0
Q ss_pred cCCCcccccchhHHHHHHHHhcCCC------CCC-----CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHH
Q 009871 308 TCRSTGLMLWESAHLMAAVLARNPT------IVA-----GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQ 376 (523)
Q Consensus 308 ~~~~~G~~~W~~a~~la~~l~~~~~------~~~-----~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~ 376 (523)
........+|+++-.++.++..+.. -.. ..+|||||+|||..++.+|..+...|+.+|. +..+..++.
T Consensus 48 ~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~ 126 (248)
T KOG2793|consen 48 LEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKF 126 (248)
T ss_pred cccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHH
Confidence 3457778999999999998876543 122 3469999999995455555557789999999 678888888
Q ss_pred HHHhcCCCCC--CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871 377 NVTANLKPPF--LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPA 454 (523)
Q Consensus 377 n~~~n~~~~~--~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~ 454 (523)
|...|+.... ...+.+..++|+........ .+..||+|+++||+|.++....|+.++..+| ..++.
T Consensus 127 ~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll---------~~~~~ 194 (248)
T KOG2793|consen 127 NRDKNNIALNQLGGSVIVAILVWGNALDVSFR---LPNPFDLILASDVVYEEESFEGLVKTLAFLL---------AKDGT 194 (248)
T ss_pred hhhhhhhhhhhcCCceeEEEEecCCcccHhhc---cCCcccEEEEeeeeecCCcchhHHHHHHHHH---------hcCCe
Confidence 8777766432 13789999999998654332 1212999999999999999999999999999 33668
Q ss_pred EEEEEeecCCChhH---HHHHHHHcCCEEEEEc
Q 009871 455 FILCHIFRQVDEPS---MLSAATQCGFRLVDKW 484 (523)
Q Consensus 455 ~~l~~~~r~~~~~~---~~~~~~~~gf~~~~~~ 484 (523)
+++.+..|+....+ ++.......|.+....
T Consensus 195 i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (248)
T KOG2793|consen 195 IFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQES 227 (248)
T ss_pred EEEEEecccchHHHHHHHHhhhhhccceeeeEe
Confidence 88888888753322 2333333455555443
No 20
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.52 E-value=3.9e-13 Score=122.88 Aligned_cols=138 Identities=21% Similarity=0.183 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
+.+|.+++.. .++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+..|+. .+.+...|+.+
T Consensus 8 ~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~ 77 (179)
T TIGR00537 8 SLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-----GLDVVMTDLFK 77 (179)
T ss_pred HHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEccccc
Confidence 3555565532 3567899999999988888888776 899999999999999999998764 24555555543
Q ss_pred CCcchhhhhhcCCCccEEEEccccCCCCC---------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 400 RDHIEAIKEENNEGFEVILGTDVSYIPEA---------------------ILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
. ..++||+|+++...+.... +..+++.+.++| +|+|.++++
T Consensus 78 ~---------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------k~gG~~~~~ 139 (179)
T TIGR00537 78 G---------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEIL---------KEGGRVQLI 139 (179)
T ss_pred c---------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhh---------CCCCEEEEE
Confidence 2 1348999999876553221 467788899999 679999887
Q ss_pred EeecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871 459 HIFRQVDEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 459 ~~~r~~~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
... ......+++.+++.||.++.+...
T Consensus 140 ~~~-~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 140 QSS-LNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred Eec-cCChHHHHHHHHhCCCeEEEEEEe
Confidence 754 233567899999999999988663
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=6e-13 Score=133.79 Aligned_cols=133 Identities=11% Similarity=0.119 Sum_probs=104.9
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||||||+|.++..++.....+|+++|+++.+++.+++++..++.. .++.+...|..+. ++++++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~---~~v~~~~~D~~~~-------~~~~~~ 186 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS---DKVSFQVADALNQ-------PFEDGQ 186 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEcCcccC-------CCCCCC
Confidence 467899999999998888888876668999999999999999999887664 4566666555432 234679
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------------C
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------------V 464 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------------~ 464 (523)
||+|++..++++..+...+++.+.++| +|||.++++...+. .
T Consensus 187 FD~V~s~~~~~h~~d~~~~l~e~~rvL---------kpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~ 257 (340)
T PLN02244 187 FDLVWSMESGEHMPDKRKFVQELARVA---------APGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWC 257 (340)
T ss_pred ccEEEECCchhccCCHHHHHHHHHHHc---------CCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCC
Confidence 999999999999888999999999999 77999988653211 0
Q ss_pred ChhHHHHHHHHcCCEEEEEcC
Q 009871 465 DEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 465 ~~~~~~~~~~~~gf~~~~~~~ 485 (523)
+...+.+.+++.||...++..
T Consensus 258 s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 258 STSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred CHHHHHHHHHHCCCCeeEeee
Confidence 234566778899999877643
No 22
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=119.03 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=87.2
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+..+|||+|||+|.++..|++..-...++|+|+|++++++|+..+.... ..++|.+.|+.+. .+..++||+|+-
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEee
Confidence 4449999999999999999999545569999999999999987665432 4499999999976 456788998876
Q ss_pred ------cccc--ccceeeec-----ceEEecCCeEEEe---eCHHHHHHHHHhCCCcEEEE
Q 009871 153 ------ERLT--GKDQKISE-----NFYVRGDGTRAFY---FSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 153 ------~~~~--~~~~~~~~-----~~~~~~~g~~~~~---~~~~~l~~ll~~~Gf~~~~~ 197 (523)
..+. ....++.- .-.++++|.+... ||.+|+.+.+...||.....
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEe
Confidence 1110 11111100 0146788888764 69999999999888876443
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=9.8e-13 Score=130.82 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=118.5
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
-|.+.......+ .+....++++|||||||+|.++..++..++..|+++|.|+.++..++......+. ..++.+...
T Consensus 104 ew~s~~k~~~l~-~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~---~~~i~~~~~ 179 (322)
T PRK15068 104 EWRSDWKWDRVL-PHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN---DQRAHLLPL 179 (322)
T ss_pred eehHHhHHHHHH-HhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEeC
Confidence 455544433322 2333457899999999999988888888888899999999888655433222111 135666655
Q ss_pred ecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------
Q 009871 396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------- 462 (523)
Q Consensus 396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------- 462 (523)
+..+. +. +.+||+|++..++|+..+...+++.+.+.| +|||.+++.....
T Consensus 180 d~e~l-------p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~L---------kpGG~lvl~~~~i~~~~~~~l~p~~~ 242 (322)
T PRK15068 180 GIEQL-------PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQL---------VPGGELVLETLVIDGDENTVLVPGDR 242 (322)
T ss_pred CHHHC-------CC-cCCcCEEEECChhhccCCHHHHHHHHHHhc---------CCCcEEEEEEEEecCCCccccCchhH
Confidence 44332 12 468999999999999999999999999999 6799998753210
Q ss_pred -----C----CChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCcccc
Q 009871 463 -----Q----VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYL 510 (523)
Q Consensus 463 -----~----~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (523)
+ .+...+...++++||+..++...+... ...+....|+..+++....
T Consensus 243 y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t~-~~eqr~t~w~~~~sl~~fl 298 (322)
T PRK15068 243 YAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVTT-TEEQRKTEWMTTESLADFL 298 (322)
T ss_pred HhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCCC-ccccccccCcccCcHhhcC
Confidence 0 134567888999999999886654433 3345555677655544433
No 24
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.51 E-value=6.7e-13 Score=127.80 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=108.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871 311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 390 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v 390 (523)
..|.-..+.+..+.+++.... .++.+|||+|||+|.++..+++.++.+|+++|+|+.+++.+++|+..|++. ..+
T Consensus 97 afgtg~h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~ 171 (250)
T PRK00517 97 AFGTGTHPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNV 171 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceE
Confidence 344555788888888887543 478899999999998887777777778999999999999999999998763 222
Q ss_pred EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871 391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 470 (523)
Q Consensus 391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~ 470 (523)
.+. .. ..+||+|+++ ...+.+..+++.+.++| +|||.++++.... ...+.+.
T Consensus 172 ~~~-----~~----------~~~fD~Vvan---i~~~~~~~l~~~~~~~L---------kpgG~lilsgi~~-~~~~~v~ 223 (250)
T PRK00517 172 YLP-----QG----------DLKADVIVAN---ILANPLLELAPDLARLL---------KPGGRLILSGILE-EQADEVL 223 (250)
T ss_pred EEc-----cC----------CCCcCEEEEc---CcHHHHHHHHHHHHHhc---------CCCcEEEEEECcH-hhHHHHH
Confidence 221 10 1279999986 23345677888999999 7799999986653 3456788
Q ss_pred HHHHHcCCEEEEEcC
Q 009871 471 SAATQCGFRLVDKWP 485 (523)
Q Consensus 471 ~~~~~~gf~~~~~~~ 485 (523)
+.+++.||++.+...
T Consensus 224 ~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 224 EAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHCCCEEEEEEE
Confidence 889999999988765
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=5e-13 Score=131.97 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=101.7
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||||||+|.++..++..+ .+|+++|.++++++.++.++..+... .++.+...+-. .+ +...++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~---~~i~~~~~dae---~l----~~~~~~ 198 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVT---STIEYLCTTAE---KL----ADEGRK 198 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcc---cceeEEecCHH---Hh----hhccCC
Confidence 467899999999998887777664 58999999999999999887665432 24444433221 11 223568
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------------CC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------VD 465 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------------~~ 465 (523)
||+|++.+++++..+...+++.+.++| +|||.++++...+. .+
T Consensus 199 FD~Vi~~~vLeHv~d~~~~L~~l~r~L---------kPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~t 269 (322)
T PLN02396 199 FDAVLSLEVIEHVANPAEFCKSLSALT---------IPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVT 269 (322)
T ss_pred CCEEEEhhHHHhcCCHHHHHHHHHHHc---------CCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCC
Confidence 999999999999999999999999999 78999998864321 23
Q ss_pred hhHHHHHHHHcCCEEEEEcC
Q 009871 466 EPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 466 ~~~~~~~~~~~gf~~~~~~~ 485 (523)
.+++...++++||++.++.-
T Consensus 270 p~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 270 PEELSMILQRASVDVKEMAG 289 (322)
T ss_pred HHHHHHHHHHcCCeEEEEee
Confidence 46788888999999998833
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=1.2e-12 Score=128.71 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=117.6
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
-|.+......++.. ....++++|||+|||+|.++..++..++..|+++|.|+.|+..++.....-.. ..++.+..+
T Consensus 103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~---~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN---DKRAILEPL 178 (314)
T ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc---CCCeEEEEC
Confidence 46665555555543 34467899999999999888888888888999999999998765432221111 134445444
Q ss_pred ecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------c
Q 009871 396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------R 462 (523)
Q Consensus 396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------r 462 (523)
+..+. + ...+||+|++..++|+..+....++.++++| +|||.+++.... |
T Consensus 179 ~ie~l-------p-~~~~FD~V~s~gvL~H~~dp~~~L~el~r~L---------kpGG~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 179 GIEQL-------H-ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQL---------VIKGELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred CHHHC-------C-CCCCcCEEEEcchhhccCCHHHHHHHHHHhc---------CCCCEEEEEEEEecCccccccCchHH
Confidence 33221 1 1248999999999999999999999999999 779999875321 0
Q ss_pred ---------CCChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCcccc
Q 009871 463 ---------QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYL 510 (523)
Q Consensus 463 ---------~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (523)
..+...+...++++||+..++......... ++....|+..+++....
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~-eqr~t~w~~~~sl~~~l 297 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPE-EQRKTDWILGESLEDFL 297 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHH-HhhhhhhhhccchHhhc
Confidence 013345677889999999987654333322 44555587765554433
No 27
>PLN02244 tocopherol O-methyltransferase
Probab=99.49 E-value=2.4e-13 Score=136.67 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++.+|||||||+|.++..|++.+ +++|+|||+|+.|++.|+++.... ..+++++++|+.++ ++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----CCCCCCccEEE
Confidence 467899999999999999999886 678999999999999999875432 35799999999877 77889999999
Q ss_pred E-----------------ccccccceeeecceEE----ecCC-e-----------------EEEeeCHHHHHHHHHhCCC
Q 009871 152 M-----------------ERLTGKDQKISENFYV----RGDG-T-----------------RAFYFSNDFLTSLFKENGF 192 (523)
Q Consensus 152 ~-----------------~~~~~~~~~~~~~~~~----~~~g-~-----------------~~~~~~~~~l~~ll~~~Gf 192 (523)
+ .+.+++++.+.-..+. .+.. . +..+.+.+++.++++++||
T Consensus 192 s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf 271 (340)
T PLN02244 192 SMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGL 271 (340)
T ss_pred ECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCC
Confidence 9 3444555543321110 0000 0 0012378899999999999
Q ss_pred cEEEEEe
Q 009871 193 DVEELGL 199 (523)
Q Consensus 193 ~~~~~~~ 199 (523)
..+++..
T Consensus 272 ~~v~~~d 278 (340)
T PLN02244 272 QDIKTED 278 (340)
T ss_pred CeeEeee
Confidence 9877643
No 28
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=1e-12 Score=129.11 Aligned_cols=147 Identities=22% Similarity=0.261 Sum_probs=108.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871 311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 390 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v 390 (523)
..|.-.++++.+..+++.... .++++|||+|||+|.++..+++.++.+|+++|+|+.+++.+++|+..|++. ..+
T Consensus 137 aFgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~---~~~ 211 (288)
T TIGR00406 137 AFGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS---DRL 211 (288)
T ss_pred cccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---cce
Confidence 344446677777777776543 367899999999998888877778789999999999999999999998875 233
Q ss_pred EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871 391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 470 (523)
Q Consensus 391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~ 470 (523)
.+...+ .. ....++||+|+++- ....+..++..+.++| +|||.++++.... .....+.
T Consensus 212 ~~~~~~---~~------~~~~~~fDlVvan~---~~~~l~~ll~~~~~~L---------kpgG~li~sgi~~-~~~~~v~ 269 (288)
T TIGR00406 212 QVKLIY---LE------QPIEGKADVIVANI---LAEVIKELYPQFSRLV---------KPGGWLILSGILE-TQAQSVC 269 (288)
T ss_pred EEEecc---cc------cccCCCceEEEEec---CHHHHHHHHHHHHHHc---------CCCcEEEEEeCcH-hHHHHHH
Confidence 333221 10 12246899999973 2345678888999999 7799999987653 3445677
Q ss_pred HHHHHcCCEEEEEcC
Q 009871 471 SAATQCGFRLVDKWP 485 (523)
Q Consensus 471 ~~~~~~gf~~~~~~~ 485 (523)
+.+++. |++..+..
T Consensus 270 ~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 270 DAYEQG-FTVVEIRQ 283 (288)
T ss_pred HHHHcc-CceeeEec
Confidence 777776 98877654
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.46 E-value=1.4e-13 Score=126.14 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=89.7
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.+|.+|||+|||-|.++..+|+.| ++|+++|+++.+|+.|+..+..+++.. +|... ..+++.. ..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i----------~y~~~-~~edl~~-~~~~ 124 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNI----------DYRQA-TVEDLAS-AGGQ 124 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccc----------cchhh-hHHHHHh-cCCC
Confidence 589999999999998888888888 689999999999999999998877742 22221 1222211 2369
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
||+|++.+|+.|..+...+++.+.+++ +|+|.++++...|.
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lv---------kP~G~lf~STinrt 165 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLV---------KPGGILFLSTINRT 165 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHc---------CCCcEEEEeccccC
Confidence 999999999999999999999999999 78999999998865
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=1.8e-12 Score=123.38 Aligned_cols=144 Identities=18% Similarity=0.255 Sum_probs=116.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
++...-.+.+++...+.+|.+|||||||.|+++..+|+....+|+++++|++..+.+++.+..-++. .++++...||
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v~l~d~ 131 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEEEeccc
Confidence 4444556777788888999999999999999999999997789999999999999999999998876 6788888899
Q ss_pred CCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC-----------
Q 009871 398 GNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV----------- 464 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~----------- 464 (523)
.+. .+.||-|++..++-+ .+..+.+++.+.++| +|+|.+++-...+..
T Consensus 132 rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L---------~~~G~~llh~I~~~~~~~~~~~~~i~ 192 (283)
T COG2230 132 RDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALL---------KPGGRMLLHSITGPDQEFRRFPDFID 192 (283)
T ss_pred ccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhc---------CCCceEEEEEecCCCcccccchHHHH
Confidence 875 346999999999877 456999999999999 678888765554322
Q ss_pred ----------ChhHHHHHHHHcCCEEEEE
Q 009871 465 ----------DEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 465 ----------~~~~~~~~~~~~gf~~~~~ 483 (523)
+...+.+.+.+.||.+.+.
T Consensus 193 ~yiFPgG~lPs~~~i~~~~~~~~~~v~~~ 221 (283)
T COG2230 193 KYIFPGGELPSISEILELASEAGFVVLDV 221 (283)
T ss_pred HhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence 1234455567788887765
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.46 E-value=4.7e-13 Score=122.07 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=87.9
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTME 153 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (523)
++.+|||+|||+|..+..+++..++++|+|+|+|+.|++.|+++.+..+ .+++++++|+.+. +. +++||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~----~~-~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF----GQ-EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC----CC-CCCccEEEEc
Confidence 4789999999999999999988888999999999999999998765432 4599999999875 33 6789999992
Q ss_pred cc------cccceeeecceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871 154 RL------TGKDQKISENFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 154 ~~------~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~ 197 (523)
.+ .....+ .++++|.+++.. ...++..+.+..|+.+.++
T Consensus 120 ~~~~~~~~l~~~~~-----~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 120 AVASLSDLVELCLP-----LLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred cccCHHHHHHHHHH-----hcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 22 112222 678888877653 4567788888889986544
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.45 E-value=1e-12 Score=125.43 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=66.6
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
..+...++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.|++.|+++... ...+++++++|+... ++++++
T Consensus 39 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~ 114 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL----PFDDNS 114 (231)
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC----CCCCCC
Confidence 34455678899999999999999999884 677999999999999999987532 235789999999876 566789
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+|++
T Consensus 115 fD~V~~ 120 (231)
T TIGR02752 115 FDYVTI 120 (231)
T ss_pred ccEEEE
Confidence 999998
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=6.6e-13 Score=128.64 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=89.1
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
..+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++... ..++.+.++|+... ++++++||
T Consensus 46 ~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~----~~~~~~FD 119 (263)
T PTZ00098 46 SDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK----DFPENTFD 119 (263)
T ss_pred HhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC----CCCCCCeE
Confidence 33455678899999999999999988765 67899999999999999987643 35799999999876 67789999
Q ss_pred EEEE-------------------ccccccceeeecceEEecCC-------------eEEEeeCHHHHHHHHHhCCCcEEE
Q 009871 149 IVTM-------------------ERLTGKDQKISENFYVRGDG-------------TRAFYFSNDFLTSLFKENGFDVEE 196 (523)
Q Consensus 149 ~V~~-------------------~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~l~~ll~~~Gf~~~~ 196 (523)
+|++ .+.+++++.+.-..+...+. ....+.+.+++.++|+++||+.+.
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeee
Confidence 9999 12234444332111111000 001123778999999999999876
Q ss_pred EE
Q 009871 197 LG 198 (523)
Q Consensus 197 ~~ 198 (523)
..
T Consensus 200 ~~ 201 (263)
T PTZ00098 200 AK 201 (263)
T ss_pred EE
Confidence 64
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=2.1e-12 Score=124.94 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=107.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
+|-....+.+.+...+.+|.+|||||||.|+++..++.+...+|+++.+|++..+.+++.+...++. .++.+...||
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~---~~v~v~~~D~ 121 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE---DRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS---STEEEEES-G
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEeec
Confidence 4555667888888888999999999999999999999985568999999999999999999988775 5777777777
Q ss_pred CCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------
Q 009871 398 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------ 463 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------ 463 (523)
.+. +.+||.|++.+++.+. +.++.+++.+.++| +|||.+++....+.
T Consensus 122 ~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L---------kpgG~~~lq~i~~~~~~~~~~~~~~~ 182 (273)
T PF02353_consen 122 RDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL---------KPGGRLVLQTITHRDPPYHAERRSSS 182 (273)
T ss_dssp GG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS---------ETTEEEEEEEEEE--HHHHHCTTCCC
T ss_pred ccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhc---------CCCcEEEEEecccccccchhhcCCCc
Confidence 543 2399999999998885 67899999999999 77999987544321
Q ss_pred -------------CChhHHHHHHHHcCCEEEEEcC
Q 009871 464 -------------VDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 464 -------------~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
++...+...+++.||++..+..
T Consensus 183 ~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 183 DFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp HHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred eEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 1223455667788999887754
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.44 E-value=6.2e-13 Score=111.56 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=82.2
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
|+.+|||||||+|.++..+++. ...+|+++|+|+.+++.+++|+..+... .++.+...|+ .. .. ....+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~-~~-~~-----~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS---DRITFVQGDA-EF-DP-----DFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT---TTEEEEESCC-HG-GT-----TTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECcc-cc-Cc-----ccCCC
Confidence 5789999999999888888883 5678999999999999999999666554 6788887777 11 11 12357
Q ss_pred ccEEEEcc-ccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 414 FEVILGTD-VSYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 414 fD~Ii~~d-~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
||+|++.. +... .+....+++.+.++| +|||.+++..
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLL---------KPGGRLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHE---------EEEEEEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhc---------CCCcEEEEEE
Confidence 99999988 3321 135677899999999 6799999864
No 36
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.44 E-value=1.3e-13 Score=126.95 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=104.8
Q ss_pred cCCCCCCCChHHHHHHHHHhhHHHHH------HHHhcccccccchhhhHHHHhhhhcC---CCCCeEEEECCCccccHHH
Q 009871 22 YPTPNTGVSPFWRDKYEREAKKYWDL------FYKRHQDRFFKDRHYLDKEWGRYFSG---AGRKDVLEVGCGAGNTIFP 92 (523)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~Wd~------~y~~~~~~f~~~~~~l~~~~~~~~~~---~~~~~iLDiGcG~G~~~~~ 92 (523)
...++..++..+-.+|...+.+|||. +.+.+..+...-++.+....+...+. ..+.+|||+|||+|.++.+
T Consensus 27 s~~s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSep 106 (282)
T KOG1270|consen 27 SQASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEP 106 (282)
T ss_pred cccceecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchh
Confidence 33444456666678899999999995 22223233322222222222111111 1257899999999999999
Q ss_pred HHhhCCCCEEEEEeCCHHHHHHHHhccccCC---C----cEEEEEeeccCCccCCCCCCCceeEEEE-------------
Q 009871 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---T----RVSTFVCDLISDDLSRQISPSSIDIVTM------------- 152 (523)
Q Consensus 93 l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~----~v~~~~~d~~~~~~~~~~~~~~fD~V~~------------- 152 (523)
|++. +++|+|||+|++||+.|+++....+ . ++++.+.|++.. .+.||+|+|
T Consensus 107 LArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDaVvcsevleHV~dp~~~ 177 (282)
T KOG1270|consen 107 LARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDAVVCSEVLEHVKDPQEF 177 (282)
T ss_pred hHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccceeeeHHHHHHHhCHHHH
Confidence 9999 5679999999999999999854332 2 467777787755 345999999
Q ss_pred ----ccccccceeeecc-------------------eEEecCCeEEE--eeCHHHHHHHHHhCCCcEEE
Q 009871 153 ----ERLTGKDQKISEN-------------------FYVRGDGTRAF--YFSNDFLTSLFKENGFDVEE 196 (523)
Q Consensus 153 ----~~~~~~~~~~~~~-------------------~~~~~~g~~~~--~~~~~~l~~ll~~~Gf~~~~ 196 (523)
...+++++++--. .-+-|.|++.+ |.+++++.+++..+++++..
T Consensus 178 l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 178 LNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred HHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence 1222333322110 00123344332 56899999999998887643
No 37
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=2.5e-12 Score=124.39 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=100.3
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++.+|||+|||+|.++..++..+ .+|+++|+|++|++.|++++..+++. .++.+...+..+ +.+..+++|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~---~~v~~~~~d~~~------l~~~~~~~f 113 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVS---DNMQFIHCAAQD------IAQHLETPV 113 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc---cceEEEEcCHHH------HhhhcCCCC
Confidence 56799999999998888888875 57999999999999999999887654 345554443322 112335689
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------------------
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------------------- 462 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-------------------------------- 462 (523)
|+|++..++++......+++.+.++| +|||.++++....
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVL---------RPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHc---------CCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC
Confidence 99999999999888999999999999 7799998764321
Q ss_pred CCChhHHHHHHHHcCCEEEEE
Q 009871 463 QVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 463 ~~~~~~~~~~~~~~gf~~~~~ 483 (523)
..+.+++.+.+++.||++...
T Consensus 185 ~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred CCCHHHHHHHHHHCCCeEeee
Confidence 122356777888999998754
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.43 E-value=2.7e-12 Score=124.32 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=103.0
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
+..+.....+.++.+|||||||+|..+..++.....+|+++|+++.+++.++++... ..++.+...|..+.
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~--- 111 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK--- 111 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC---
Confidence 334444445568889999999999888777766556899999999999999987543 13566665554422
Q ss_pred hhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------------
Q 009871 404 EAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------ 463 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------------ 463 (523)
++++++||+|++.+++++.. ....+++.+.++| +|||.+++......
T Consensus 112 ----~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~L---------kPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
T PTZ00098 112 ----DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWL---------KPNGILLITDYCADKIENWDEEFKAYIKKRKY 178 (263)
T ss_pred ----CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHc---------CCCcEEEEEEeccccccCcHHHHHHHHHhcCC
Confidence 23457899999999887653 7899999999999 78999998764221
Q ss_pred --CChhHHHHHHHHcCCEEEEEcC
Q 009871 464 --VDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 464 --~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
.+...+.+.++++||+......
T Consensus 179 ~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 179 TLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCCCHHHHHHHHHHCCCCeeeEEe
Confidence 1224566778889999877654
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.41 E-value=8.7e-12 Score=120.68 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=84.2
Q ss_pred CCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
..++.+|||+|||+|.++..++.. ++ .+|+++|+|++|++.|+++....... ...++.+...|..+. +++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l-------p~~ 142 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL-------PFD 142 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC-------CCC
Confidence 346789999999999888777775 33 58999999999999998765421110 113455555443321 345
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+++||+|+++.++.+..+...+++.+.++| +|||.+++....
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvL---------kpGG~l~i~d~~ 184 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVL---------KPGSRVSILDFN 184 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHc---------CcCcEEEEEECC
Confidence 678999999999999889999999999999 779998877543
No 40
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.41 E-value=4.2e-12 Score=116.23 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=69.2
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCC------CEEEEEeCCHHHHHHHHhcccc----CCCcEEEEEeeccCCcc
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD------VFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDL 138 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~------~~v~gvD~S~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~ 138 (523)
..+.+..+.++||++||||.+++.+.++.+. .+|+.+|+||.|++.+++++.. ....+.|+++|++++
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-- 171 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-- 171 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC--
Confidence 3455577899999999999999999998655 7899999999999999998732 234699999999999
Q ss_pred CCCCCCCceeEEEE
Q 009871 139 SRQISPSSIDIVTM 152 (523)
Q Consensus 139 ~~~~~~~~fD~V~~ 152 (523)
||++++||..++
T Consensus 172 --pFdd~s~D~yTi 183 (296)
T KOG1540|consen 172 --PFDDDSFDAYTI 183 (296)
T ss_pred --CCCCCcceeEEE
Confidence 899999999998
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.40 E-value=7.5e-12 Score=114.16 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=96.7
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
++.+|||+|||+|.++..++.. ...+|+++|.++.|++.+++|++.++.. .+.+...+..+. .. .++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~d~~~~-------~~-~~~ 112 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHGRAEEF-------GQ-EEK 112 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEeccHhhC-------CC-CCC
Confidence 4789999999999888877764 4568999999999999999999998764 266665554332 11 458
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
||+|++.. ...++.+++.+.++| +|||.+++.... .....+.+..+..|+.+..+..
T Consensus 113 fDlV~~~~----~~~~~~~l~~~~~~L---------kpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 113 FDVVTSRA----VASLSDLVELCLPLL---------KPGGRFLALKGR--DPEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred ccEEEEcc----ccCHHHHHHHHHHhc---------CCCeEEEEEeCC--ChHHHHHHHHHhcCceEeeeEE
Confidence 99999874 246789999999999 779999988644 2344677788889999887754
No 42
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=1.8e-11 Score=115.97 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=106.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 398 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~ 398 (523)
.+.++++++... ...++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++. .+.+...|+.
T Consensus 21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~~~~~~d~~ 94 (223)
T PRK14967 21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-----DVDVRRGDWA 94 (223)
T ss_pred cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-----eeEEEECchh
Confidence 456677777543 2346789999999999888888777666999999999999999999988764 2445544543
Q ss_pred CCCcchhhhhhcCCCccEEEEccccCCCC---------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871 399 NRDHIEAIKEENNEGFEVILGTDVSYIPE---------------------AILPLFATAKELTASSNKSLREDQQPAFIL 457 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l 457 (523)
+. +...+||+|+++...+... .+..+++.+.++| ++||.+++
T Consensus 95 ~~--------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~L---------k~gG~l~~ 157 (223)
T PRK14967 95 RA--------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALL---------APGGSLLL 157 (223)
T ss_pred hh--------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhc---------CCCcEEEE
Confidence 21 2346899999975432211 1456778888899 67999988
Q ss_pred EEeecCCChhHHHHHHHHcCCEEEEEcCCCCCCC
Q 009871 458 CHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSAS 491 (523)
Q Consensus 458 ~~~~r~~~~~~~~~~~~~~gf~~~~~~~~~~~~~ 491 (523)
+.... .....+++.+++.||.+........+..
T Consensus 158 ~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 190 (223)
T PRK14967 158 VQSEL-SGVERTLTRLSEAGLDAEVVASQWIPFG 190 (223)
T ss_pred EEecc-cCHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 76543 2345788888999998877655444443
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=8.3e-12 Score=115.69 Aligned_cols=102 Identities=25% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.|++.+++++..+++. .+.+...|+.+. ++ +++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~----~v~~~~~d~~~~-------~~-~~~ 95 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLD----NLHTAVVDLNNL-------TF-DGE 95 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCC----cceEEecChhhC-------Cc-CCC
Confidence 466899999999998888888875 48999999999999999998887653 355555554332 12 357
Q ss_pred ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871 414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFIL 457 (523)
Q Consensus 414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l 457 (523)
||+|+++.++++. +....+++.+.++| +|||.+++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~L---------kpgG~~~~ 132 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCT---------KPGGYNLI 132 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHc---------CCCcEEEE
Confidence 9999999988753 36789999999999 77998654
No 44
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=1.9e-12 Score=125.25 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=61.6
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.+...++.+|||||||+|.++..+++++|+.+|+|+|+|+.|++.|+++ +++++++|+.++ + ++++||+
T Consensus 24 ~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~----~-~~~~fD~ 92 (255)
T PRK14103 24 RVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDW----K-PKPDTDV 92 (255)
T ss_pred hCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhC----C-CCCCceE
Confidence 3444677899999999999999999998888999999999999999874 478899999754 2 4578999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 93 v~~ 95 (255)
T PRK14103 93 VVS 95 (255)
T ss_pred EEE
Confidence 999
No 45
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=121.60 Aligned_cols=149 Identities=14% Similarity=0.211 Sum_probs=108.6
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
.+....++|||+|||+|..++.++++.+.++|+|||+++.|.+.|+++.+.+ ..+++++++|+.+.. ......+||
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--~~~~~~~fD 117 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--KALVFASFD 117 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh--hcccccccC
Confidence 3445589999999999999999999977799999999999999999987654 478999999998642 234455899
Q ss_pred EEEE-ccccccceee-----------------ec-----ceEEecCCeEEEeeCHHHH---HHHHHhCCCcEEEEEeEee
Q 009871 149 IVTM-ERLTGKDQKI-----------------SE-----NFYVRGDGTRAFYFSNDFL---TSLFKENGFDVEELGLCCK 202 (523)
Q Consensus 149 ~V~~-~~~~~~~~~~-----------------~~-----~~~~~~~g~~~~~~~~~~l---~~ll~~~Gf~~~~~~~~~~ 202 (523)
+|+| ..+...+... .+ .-.++++|++.+.+.++.+ ..++.+.+|...++..++
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~- 196 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVY- 196 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEec-
Confidence 9999 1221111110 00 1357899999988877655 777788888887765544
Q ss_pred eeeecccCccceeEEEEEEEEecC
Q 009871 203 QVENRARELVMNRRWVQAVFCSSG 226 (523)
Q Consensus 203 ~~~~~~~~~~~~r~~~~~~~~~~~ 226 (523)
.+.++.-+++.+.+......
T Consensus 197 ----p~~~k~A~~vLv~~~k~~~~ 216 (248)
T COG4123 197 ----PKIGKAANRVLVEAIKGGKS 216 (248)
T ss_pred ----CCCCCcceEEEEEEecCCCC
Confidence 45555556777776655553
No 46
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.2e-11 Score=118.36 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=112.4
Q ss_pred CCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC
Q 009871 278 LSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS 357 (523)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~ 357 (523)
...+..+-.....+.|..+.+. ..+=.+-+++..++-..+.......+ +|||||||||.+++.++..+
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~----------~~vliPr~dTe~Lve~~l~~~~~~~~--~ilDlGTGSG~iai~la~~~ 132 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVD----------EGVLIPRPDTELLVEAALALLLQLDK--RILDLGTGSGAIAIALAKEG 132 (280)
T ss_pred CCCCHhHhhccCeecceeeeeC----------CCceecCCchHHHHHHHHHhhhhcCC--cEEEecCChHHHHHHHHhhC
Confidence 3334444455567777666665 23335566666665554422221111 89999999999999998887
Q ss_pred CC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------
Q 009871 358 AD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------- 427 (523)
Q Consensus 358 ~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------- 427 (523)
+. +|++||+|+.+++.|++|+..|++ .++.+...||... + .++||+||+|...-..+
T Consensus 133 ~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~--------~-~~~fDlIVsNPPYip~~~~~~~~~~~ 199 (280)
T COG2890 133 PDAEVIAVDISPDALALARENAERNGL----VRVLVVQSDLFEP--------L-RGKFDLIVSNPPYIPAEDPELLPEVV 199 (280)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeeecccc--------c-CCceeEEEeCCCCCCCcccccChhhh
Confidence 64 999999999999999999999987 2344444477654 1 34899999985432221
Q ss_pred ----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEEEEc
Q 009871 428 ----------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLVDKW 484 (523)
Q Consensus 428 ----------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~~~~ 484 (523)
.+..++..+...| +++|.+++-... ...+.+.+.+.+.| |......
T Consensus 200 ~~EP~~Al~~g~dGl~~~~~i~~~a~~~l---------~~~g~l~le~g~--~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 200 RYEPLLALVGGGDGLEVYRRILGEAPDIL---------KPGGVLILEIGL--TQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred ccCHHHHHccCccHHHHHHHHHHhhHHHc---------CCCcEEEEEECC--CcHHHHHHHHHhcCCceEEEEE
Confidence 2445555566666 567777775532 34556888888999 5544443
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.39 E-value=3e-11 Score=111.23 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=94.6
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
...++.+|||+|||+|.++..+++.++ .+|+++|+++.+++.+++|+..++.. ++.+...+... .+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~----~i~~~~~d~~~--------~~- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG----NIDIIPGEAPI--------EL- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CeEEEecCchh--------hc-
Confidence 344778999999999988888887753 58999999999999999999987653 35544333210 11
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 484 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~ 484 (523)
..+||+|++... ...+..+++.+.++| +|+|.+++.... ......+.+.+++.||+..++.
T Consensus 95 ~~~~D~v~~~~~---~~~~~~~l~~~~~~L---------k~gG~lv~~~~~-~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 95 PGKADAIFIGGS---GGNLTAIIDWSLAHL---------HPGGRLVLTFIL-LENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred CcCCCEEEECCC---ccCHHHHHHHHHHhc---------CCCeEEEEEEec-HhhHHHHHHHHHHCCCCcceEE
Confidence 358999998643 345788899999999 679999886543 3345678888999999765543
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=2.2e-12 Score=121.96 Aligned_cols=158 Identities=23% Similarity=0.311 Sum_probs=100.9
Q ss_pred HHHHHHHhhHHHHHHHHhcc--ccc----ccchhhhHHHHhhhhc--CCCCCeEEEECCCccccHHHHHhhCCCCEEEEE
Q 009871 34 RDKYEREAKKYWDLFYKRHQ--DRF----FKDRHYLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYAC 105 (523)
Q Consensus 34 ~~~~~~~~~~~Wd~~y~~~~--~~f----~~~~~~l~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gv 105 (523)
+..|+.....-|+..|..+. +.+ ......+...+.++++ ..++.+|||+|||+|.++..+++. +.+|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gv 83 (219)
T TIGR02021 6 RHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAV 83 (219)
T ss_pred HHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEE
Confidence 34455555667887776421 110 0111222233333343 346789999999999999999887 5579999
Q ss_pred eCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeec
Q 009871 106 DFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISE 164 (523)
Q Consensus 106 D~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~ 164 (523)
|+|+.|++.|+++..... .++.+.++|+... + ++||+|++ .+..+++..+.-
T Consensus 84 D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 84 DISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999999998764332 4789999999765 2 78999998 111111111110
Q ss_pred --------------ceEEe-cCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871 165 --------------NFYVR-GDGTRAFYFSNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 165 --------------~~~~~-~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
.++.. ......++++.+++.++++++||+++.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 157 APKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred CCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 00000 1123355679999999999999999877544
No 49
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.38 E-value=3.6e-12 Score=126.24 Aligned_cols=121 Identities=16% Similarity=0.078 Sum_probs=88.0
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
.++.+|||||||+|..+..+++..++.+|+|+|+|+.|++.|+++.. ..+++++.+|+.++ ++++++||+|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~l----p~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDL----PFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhC----CCCCCceeEEEEc
Confidence 35679999999999999999888777889999999999999998753 24688999999877 677889999998
Q ss_pred ----------------ccccccceeeecceEEecCC--------eEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871 153 ----------------ERLTGKDQKISENFYVRGDG--------TRAFYFSNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 153 ----------------~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
.+.+++++.+.-.....++. ....+.+.+++.++++++||+.+++...
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 23334444422000000000 0011347899999999999999887644
No 50
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=1.6e-11 Score=113.01 Aligned_cols=145 Identities=20% Similarity=0.161 Sum_probs=106.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
.++.+.+|.+++.. .++++|||+|||+|.++..++.. ..+|+++|+++++++.+++|+..++... ..+.+...
T Consensus 8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~~ 80 (188)
T PRK14968 8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN--NGVEVIRS 80 (188)
T ss_pred cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC--cceEEEec
Confidence 35666777777754 46789999999999888888877 5789999999999999999999887642 12555555
Q ss_pred ecCCCCcchhhhhhcCCCccEEEEccccCCC---------------------CChHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871 396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------------------EAILPLFATAKELTASSNKSLREDQQPA 454 (523)
Q Consensus 396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~l~~~l~~ll~~~~~~~~~~~~g~ 454 (523)
|+.+. +....||+|+++...+.. ..+..+++.+.++| +|+|.
T Consensus 81 d~~~~--------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L---------k~gG~ 143 (188)
T PRK14968 81 DLFEP--------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYL---------KPGGR 143 (188)
T ss_pred ccccc--------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhc---------CCCeE
Confidence 55432 223489999987655431 12466788888999 67888
Q ss_pred EEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 455 FILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 455 ~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
+++.... ......+.+.+.+.||++..+..
T Consensus 144 ~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 144 ILLLQSS-LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred EEEEEcc-cCCHHHHHHHHHHCCCeeeeeee
Confidence 8776543 22345688889999999887655
No 51
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.38 E-value=1.9e-11 Score=116.58 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 409 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 409 (523)
...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..++. .++.+...|..+. ++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~-------~~ 110 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----HNVELVHGNAMEL-------PF 110 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEechhcC-------CC
Confidence 3446789999999999888877765 3 35899999999999999999877654 2455554444322 23
Q ss_pred cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
+.++||+|+++.++.+......+++.+.++| +|||.+++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~L---------k~gG~l~~~~~ 152 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVV---------KPGGKVVCLET 152 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHc---------CcCeEEEEEEC
Confidence 3568999999988888888899999999999 67999887543
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=1.1e-11 Score=112.81 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=92.4
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
++.+|||+|||+|.++..++..+ ..+|+++|.|+.|++.+++|++.++.. ++.+...+..+. ...++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~----~i~~i~~d~~~~--------~~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN----NVEIVNGRAEDF--------QHEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC----CeEEEecchhhc--------cccCC
Confidence 57899999999998888777664 458999999999999999999887653 466666665432 01468
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH---HHHHHcCCEEEEEcC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML---SAATQCGFRLVDKWP 485 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~---~~~~~~gf~~~~~~~ 485 (523)
||+|++.. ...++.+++.+.++| +|||.+++.+.. ....++. +.+...||++.+.-+
T Consensus 110 fD~I~s~~----~~~~~~~~~~~~~~L---------kpgG~lvi~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 110 FDVITSRA----LASLNVLLELTLNLL---------KVGGYFLAYKGK--KYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred ccEEEehh----hhCHHHHHHHHHHhc---------CCCCEEEEEcCC--CcHHHHHHHHHhhhhcCceEeeccc
Confidence 99999864 345778889999999 779999887533 3333333 444457999887755
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.37 E-value=4.3e-12 Score=112.71 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=89.0
Q ss_pred CCCeEEEECCCccHHHHHHHh-cC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 335 AGKKVLELGCGCGGICSMVAA-GS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~-~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
++.+|||||||+|.++..++. .+ ..+|+++|++++|++.++.+++.++.. ++.+...|+.+... .++ .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~----ni~~~~~d~~~l~~-----~~~-~ 72 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD----NIEFIQGDIEDLPQ-----ELE-E 72 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST----TEEEEESBTTCGCG-----CSS-T
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc----ccceEEeehhcccc-----ccC-C
Confidence 578999999999998888884 43 568999999999999999999987763 67888777765211 012 6
Q ss_pred CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
.||+|++..++++......+++.+.++| +++|.+++....
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~l---------k~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLL---------KPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHE---------EEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHc---------CCCcEEEEEECC
Confidence 8999999999999999999999999999 669999888776
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=4.1e-12 Score=115.71 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=86.4
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTME 153 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (523)
.+.+|||+|||+|..+..++..+++.+|+|+|+|+.|++.++++.+.. ..+++++++|+.+. + .+++||+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEeh
Confidence 478999999999999999988888889999999999999998875433 24699999999865 2 35789999992
Q ss_pred cc------cccceeeecceEEecCCeEEEee---CHHHHHHHHHh---CCCcEEEEEeE
Q 009871 154 RL------TGKDQKISENFYVRGDGTRAFYF---SNDFLTSLFKE---NGFDVEELGLC 200 (523)
Q Consensus 154 ~~------~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~ll~~---~Gf~~~~~~~~ 200 (523)
.+ .+... -.++++|.++++. ...++..+.+. .||+.+++...
T Consensus 117 ~~~~~~~~~~~~~-----~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 117 ALASLNVLLELTL-----NLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred hhhCHHHHHHHHH-----HhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 11 11111 2578888887765 34455555554 78988776543
No 55
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=4.1e-12 Score=125.10 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC------CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..+++|.++|+..+ +++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-------~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-------SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-------CCCcC
Confidence 5679999999999999999987 568999999999999999976432 24578888887543 47899
Q ss_pred EEEE----ccc--------------cccceeeec---ce------------EEe-cCCeEEEeeCHHHHHHHHHhCCCcE
Q 009871 149 IVTM----ERL--------------TGKDQKISE---NF------------YVR-GDGTRAFYFSNDFLTSLFKENGFDV 194 (523)
Q Consensus 149 ~V~~----~~~--------------~~~~~~~~~---~~------------~~~-~~g~~~~~~~~~~l~~ll~~~Gf~~ 194 (523)
+|+| ..+ ..++..+.. .. +.. ...+..|+++.+++.++++++||++
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 9998 000 011111100 00 000 0123445668999999999999998
Q ss_pred EEEEe
Q 009871 195 EELGL 199 (523)
Q Consensus 195 ~~~~~ 199 (523)
...+.
T Consensus 295 ~~~~~ 299 (315)
T PLN02585 295 ARREM 299 (315)
T ss_pred EEEEE
Confidence 76543
No 56
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=3.1e-12 Score=123.82 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=86.1
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
..+.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.... ..+++++++|+.++. ++++++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~---~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA---QHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh---hhcCCCCCEEE
Confidence 45679999999999999999988 567999999999999999876433 257899999997652 24568999999
Q ss_pred E-----------------ccccccceeeecceEEe----------c------CC---------eEEEeeCHHHHHHHHHh
Q 009871 152 M-----------------ERLTGKDQKISENFYVR----------G------DG---------TRAFYFSNDFLTSLFKE 189 (523)
Q Consensus 152 ~-----------------~~~~~~~~~~~~~~~~~----------~------~g---------~~~~~~~~~~l~~ll~~ 189 (523)
+ .+++++++.+.-.++-. + .+ ...++++++++.+++++
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~ 197 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE 197 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence 9 34445555543111000 0 00 01124578999999999
Q ss_pred CCCcEEEE
Q 009871 190 NGFDVEEL 197 (523)
Q Consensus 190 ~Gf~~~~~ 197 (523)
+||+++..
T Consensus 198 aGf~~~~~ 205 (255)
T PRK11036 198 AGWQIMGK 205 (255)
T ss_pred CCCeEeee
Confidence 99998654
No 57
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.36 E-value=2.4e-12 Score=104.15 Aligned_cols=95 Identities=14% Similarity=0.210 Sum_probs=75.4
Q ss_pred EEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEE
Q 009871 340 LELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILG 419 (523)
Q Consensus 340 LElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~ 419 (523)
||+|||+|..+..+++.+..+|+++|+++.+++.++++...+ .+.+...+..+. ++++++||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-------~~~~~~~d~~~l-------~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-------GVSFRQGDAEDL-------PFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-------TEEEEESBTTSS-------SS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-------CchheeehHHhC-------cccccccccccc
Confidence 899999998888888886779999999999999999877653 333555444432 456789999999
Q ss_pred ccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871 420 TDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFIL 457 (523)
Q Consensus 420 ~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l 457 (523)
..++++.+....+++.+.++| +|+|.+++
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvL---------k~gG~l~~ 95 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVL---------KPGGRLVI 95 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHE---------EEEEEEEE
T ss_pred ccceeeccCHHHHHHHHHHHc---------CcCeEEeC
Confidence 999999999999999999999 67998875
No 58
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.35 E-value=2.4e-12 Score=107.91 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=63.0
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc--ccCCCcEEEEEeec-cCCccCCCCCCCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--DFTETRVSTFVCDL-ISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~--~~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~V~ 151 (523)
++.+|||||||+|..+..+++++++++|+|+|+|+.|++.|+++. .....+++++++|+ ... -..+.||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDP-----DFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGT-----TTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCc-----ccCCCCCEEE
Confidence 468999999999999999999878999999999999999999987 23458999999999 322 1234699998
Q ss_pred Ecc
Q 009871 152 MER 154 (523)
Q Consensus 152 ~~~ 154 (523)
+..
T Consensus 76 ~~~ 78 (112)
T PF12847_consen 76 CSG 78 (112)
T ss_dssp ECS
T ss_pred ECC
Confidence 833
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.35 E-value=1.8e-11 Score=114.23 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=92.0
Q ss_pred HHHHHHHhcccccc-cchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--
Q 009871 44 YWDLFYKRHQDRFF-KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-- 120 (523)
Q Consensus 44 ~Wd~~y~~~~~~f~-~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-- 120 (523)
+||..|+....-|. ...+-...++...+..+++.+|||+|||.|+.+..|+++ +.+|+|||+|+.+++.+.+...
T Consensus 2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCC
Confidence 67777766543332 112222222322232246789999999999999999998 6779999999999998644221
Q ss_pred -----------cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceee-ecceEEe
Q 009871 121 -----------FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKI-SENFYVR 169 (523)
Q Consensus 121 -----------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~-~~~~~~~ 169 (523)
....++++.++|+.+++.. ..+.||.|+- .+++++++.+ ...+...
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAA---DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcc---cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 1235789999999876311 1346888775 3444555432 1111110
Q ss_pred --cCCeEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871 170 --GDGTRAFYFSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 170 --~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
..+...+..+.+++.++|.. +|.+..+..
T Consensus 157 ~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 157 QSEMAGPPFSVSPAEVEALYGG-HYEIELLES 187 (213)
T ss_pred CCCCCCcCCCCCHHHHHHHhcC-CceEEEEee
Confidence 11223345689999999963 576655543
No 60
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.35 E-value=2.1e-11 Score=115.73 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=102.2
Q ss_pred CeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871 337 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 415 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD 415 (523)
++|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...+.. .++.+...|.... . + +++||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---~~i~~~~~d~~~~-~------~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ---GRIRIFYRDSAKD-P------F-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEecccccC-C------C-CCCCC
Confidence 479999999998888888775 458999999999999999999887665 4566666665432 1 1 35899
Q ss_pred EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------CChhHHHHHHHHcCCEEE
Q 009871 416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDEPSMLSAATQCGFRLV 481 (523)
Q Consensus 416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------~~~~~~~~~~~~~gf~~~ 481 (523)
+|++..++++......+++.+.++| +|||.+++...... .+...+.+.+.+.||++.
T Consensus 70 ~I~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 70 LVFGFEVIHHIKDKMDLFSNISRHL---------KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred EeehHHHHHhCCCHHHHHHHHHHHc---------CCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 9999999999888999999999999 77999988764311 123457778889999998
Q ss_pred EEcC
Q 009871 482 DKWP 485 (523)
Q Consensus 482 ~~~~ 485 (523)
+...
T Consensus 141 ~~~~ 144 (224)
T smart00828 141 EGVD 144 (224)
T ss_pred EeEE
Confidence 8754
No 61
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=2.1e-11 Score=112.78 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||+|||+|.++..++.++ .+|+++|+|+.|++.+++++..+++. +.+...+.... ++ +.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~~-------~~-~~~ 94 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINAA-------AL-NED 94 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchhc-------cc-cCC
Confidence 356799999999999888888876 48999999999999999988876653 33333333211 11 347
Q ss_pred ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
||+|+++.++++. +....+++.+.++| +|||.+++.
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lli~ 132 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHT---------RPGGYNLIV 132 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHh---------CCCcEEEEE
Confidence 9999999888764 46789999999999 779985544
No 62
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=1.3e-10 Score=118.24 Aligned_cols=172 Identities=17% Similarity=0.134 Sum_probs=112.8
Q ss_pred EEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcC
Q 009871 287 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG 366 (523)
Q Consensus 287 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~ 366 (523)
+.+..+|..+.|....+ ..||..+=. ...-.++.. ..++++|||+|||||+++..++..++.+|+++|+
T Consensus 183 ~~v~E~g~~f~vdl~~g------~ktG~flDq--r~~R~~~~~---~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~ 251 (396)
T PRK15128 183 LPIEEHGMKLLVDIQGG------HKTGYYLDQ--RDSRLATRR---YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDT 251 (396)
T ss_pred EEEEECCEEEEEecccc------cccCcChhh--HHHHHHHHH---hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEEC
Confidence 44667888888774332 356643221 111112211 1368899999999998887777777779999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--cCCCccEEEEccccCCCC---------ChHHHHHH
Q 009871 367 DSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYIPE---------AILPLFAT 435 (523)
Q Consensus 367 ~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~~---------~~~~l~~~ 435 (523)
|+.+++.+++|+..|++.. .++.+...|..+. +..+ ...+||+|++....+... .+..++..
T Consensus 252 s~~al~~a~~N~~~Ngl~~--~~v~~i~~D~~~~-----l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~ 324 (396)
T PRK15128 252 SQEALDIARQNVELNKLDL--SKAEFVRDDVFKL-----LRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML 324 (396)
T ss_pred CHHHHHHHHHHHHHcCCCC--CcEEEEEccHHHH-----HHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999998742 2455555444321 1122 245899999855443322 35556666
Q ss_pred HHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH----HHcCCEEEEEcC
Q 009871 436 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKWP 485 (523)
Q Consensus 436 l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~----~~~gf~~~~~~~ 485 (523)
..++| +++|.+++|......+.+.|.+.. .+.|-++..+..
T Consensus 325 a~~lL---------k~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~ 369 (396)
T PRK15128 325 AIQLL---------NPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_pred HHHHc---------CCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 77888 679999998887777776665544 456656655543
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.34 E-value=6.5e-11 Score=115.85 Aligned_cols=167 Identities=14% Similarity=0.074 Sum_probs=110.5
Q ss_pred ceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEE
Q 009871 284 NEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVV 362 (523)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~ 362 (523)
+-+-...|.|.++.|. ++++ .+..+...++...+.......++.+|||+|||+|.++..++... ..+|+
T Consensus 80 yi~g~~~f~g~~f~v~--~~vl--------ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~ 149 (284)
T TIGR03533 80 YLTNEAWFAGLEFYVD--ERVL--------IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVD 149 (284)
T ss_pred HHcCCCeecCcEEEEC--CCCc--------cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEE
Confidence 3444556667666654 2221 23444455555544322111245689999999999998888874 45899
Q ss_pred EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------------
Q 009871 363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------- 427 (523)
Q Consensus 363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------- 427 (523)
++|+|+.+++.|++|+..|++. .++.+...|+.+. ++..+||+|+++.......
T Consensus 150 avDis~~al~~A~~n~~~~~~~---~~i~~~~~D~~~~--------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~ 218 (284)
T TIGR03533 150 AVDISPDALAVAEINIERHGLE---DRVTLIQSDLFAA--------LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPEL 218 (284)
T ss_pred EEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc--------cCCCCccEEEECCCCCCccchhhCCHhhhcCHHH
Confidence 9999999999999999998774 4577776665432 2235799999974322111
Q ss_pred ----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871 428 ----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 428 ----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~ 483 (523)
.+..+++.+.++| +|||.+++-... +...+.+.+.+.||.....
T Consensus 219 al~gg~dGl~~~~~il~~a~~~L---------~~gG~l~~e~g~---~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 219 ALASGEDGLDLVRRILAEAADHL---------NENGVLVVEVGN---SMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhc---------CCCCEEEEEECc---CHHHHHHHHHhCCCceeee
Confidence 2356677788888 679998876543 3346778888888776443
No 64
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=8.5e-12 Score=115.63 Aligned_cols=121 Identities=20% Similarity=0.206 Sum_probs=82.7
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+.+...++.+|||+|||+|.++..|+++ +.+|+|+|+|+.|++.|+++.... ..++++.+.|+.+. ++ +++|
T Consensus 24 ~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~f 96 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL----TF-DGEY 96 (197)
T ss_pred HhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC----Cc-CCCc
Confidence 3444456789999999999999999987 567999999999999999865433 24588889998765 33 3579
Q ss_pred eEEEE-------------------ccccccceee-ecceEEecC----CeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 148 DIVTM-------------------ERLTGKDQKI-SENFYVRGD----GTRAFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 148 D~V~~-------------------~~~~~~~~~~-~~~~~~~~~----g~~~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
|+|++ .+.+++++.+ ...++...+ ....+.++.+++.++++ ||+++...
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 99998 2223444432 111111100 11123458889999997 89876653
No 65
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.34 E-value=2.7e-12 Score=118.39 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCC--CceEEEeeecCCCCcchhhhhhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL--AKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~--~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
..|++|||+|||+|.++..+|..| +.|+++|.++.|++.|++....+-..... .++.+...+. +. . .
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~------~-~ 156 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EG------L-T 156 (282)
T ss_pred cCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hh------c-c
Confidence 457899999999998888888887 57999999999999999885554333210 0122222111 11 1 3
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
+.||.|++++++.|..+++.++..+.++| +|+|.++++...|.
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~~l---------kP~G~lfittinrt 199 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSALL---------KPNGRLFITTINRT 199 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHHHh---------CCCCceEeeehhhh
Confidence 46999999999999999999999999999 78999999988864
No 66
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=122.45 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=89.4
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCce
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
.++...+++|||||||+|.++..+++.++. .|+|+|+|+.|+.+++..... ...++.+..+|+.++ ++ +++|
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l----p~-~~~F 190 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL----PA-LKAF 190 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC----CC-cCCc
Confidence 344456789999999999999999988644 599999999999876543221 235799999999877 55 6789
Q ss_pred eEEEE-----------------ccccccceeeec-ceEEecCCe--------------EEEeeCHHHHHHHHHhCCCcEE
Q 009871 148 DIVTM-----------------ERLTGKDQKISE-NFYVRGDGT--------------RAFYFSNDFLTSLFKENGFDVE 195 (523)
Q Consensus 148 D~V~~-----------------~~~~~~~~~~~~-~~~~~~~g~--------------~~~~~~~~~l~~ll~~~Gf~~~ 195 (523)
|+|+| .+.+++++.+.- ..+..+++. ..+..+.+++..+|+++||..+
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 99999 333455544321 111111111 1122488999999999999998
Q ss_pred EEEeEee
Q 009871 196 ELGLCCK 202 (523)
Q Consensus 196 ~~~~~~~ 202 (523)
++.....
T Consensus 271 ~~~~~~~ 277 (322)
T PRK15068 271 RIVDVSV 277 (322)
T ss_pred EEEeCCC
Confidence 8865544
No 67
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=2.9e-12 Score=126.02 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
.++++|||+|||+|.++.++++. +.+|+|+|+|+.|++.++++....+.++++.+.|+... .+ +++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~----~~-~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA----SI-QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc----cc-cCCccEEEEc
Confidence 34569999999999999999987 57899999999999999988765555788888888754 23 678999998
Q ss_pred ------------------ccccccceeeecceEEe-cC---C-eEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 153 ------------------ERLTGKDQKISENFYVR-GD---G-TRAFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 153 ------------------~~~~~~~~~~~~~~~~~-~~---g-~~~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
.+.+++++.+.-..... .+ + ...+.++.+++.+++. +|+++...
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 22223333311000000 00 1 1124468999999997 58887764
No 68
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=3.3e-11 Score=117.85 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=101.0
Q ss_pred CCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
+.++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++|+..++. .++.+...++.+. +++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----~~v~~~~~d~~~l-------~~~ 143 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----TNVEFRLGEIEAL-------PVA 143 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----CCEEEEEcchhhC-------CCC
Confidence 457889999999999766666654 43 3799999999999999999987665 2455555544322 233
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------CCChhHH
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------------QVDEPSM 469 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------------------~~~~~~~ 469 (523)
+++||+|+++.++++......+++.+.++| +|||.+++..... .....++
T Consensus 144 ~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L---------kpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 214 (272)
T PRK11873 144 DNSVDVIISNCVINLSPDKERVFKEAFRVL---------KPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEY 214 (272)
T ss_pred CCceeEEEEcCcccCCCCHHHHHHHHHHHc---------CCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHH
Confidence 568999999988888888899999999999 7799998864321 1234567
Q ss_pred HHHHHHcCCEEEEEcC
Q 009871 470 LSAATQCGFRLVDKWP 485 (523)
Q Consensus 470 ~~~~~~~gf~~~~~~~ 485 (523)
.+.+++.||...++..
T Consensus 215 ~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 215 LAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHHHHCCCCceEEEe
Confidence 7888899999877643
No 69
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.32 E-value=2.6e-12 Score=103.96 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=55.7
Q ss_pred EEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
||+|||+|..+..++++ ++.+|+|+|+|+.|++.++++... .++.+.++|++++ |+++++||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l----~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDL----PFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSS----SS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhC----cccccccccccc
Confidence 89999999999999999 678899999999999999997643 4566999999988 888999999999
No 70
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.32 E-value=9.5e-12 Score=111.40 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=89.6
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
..++.+|||+|||+|.++..++..+. +|+++|+++.+++. . .+.....+-. ....+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~--------~~~~~~~~~~-------~~~~~~~ 77 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R--------NVVFDNFDAQ-------DPPFPDG 77 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T--------TSEEEEEECH-------THHCHSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h--------hhhhhhhhhh-------hhhcccc
Confidence 35788999999999988888877766 89999999999887 1 1111111000 0123467
Q ss_pred CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------CChhHHH
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSML 470 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------~~~~~~~ 470 (523)
+||+|++++++++..+...+++.+.++| +|+|.++++...+. .+...+.
T Consensus 78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDPEEFLKELSRLL---------KPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp SEEEEEEESSGGGSSHHHHHHHHHHHCE---------EEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHH
T ss_pred chhhHhhHHHHhhcccHHHHHHHHHHhc---------CCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHH
Confidence 9999999999999999999999999999 67999999887642 1224567
Q ss_pred HHHHHcCCEEEE
Q 009871 471 SAATQCGFRLVD 482 (523)
Q Consensus 471 ~~~~~~gf~~~~ 482 (523)
..++++||++.+
T Consensus 149 ~ll~~~G~~iv~ 160 (161)
T PF13489_consen 149 QLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHCCCEEEE
Confidence 777888888764
No 71
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=1.5e-11 Score=130.05 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=90.5
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
+...++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|+++......+++|.++|+... ++++++||+|
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~I 336 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK----TYPDNSFDVI 336 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC----CCCCCCEEEE
Confidence 334567899999999999999988876 67899999999999999987654446799999999876 5677899999
Q ss_pred EE-----------------ccccccceeeecceEEecCCeE------------EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 151 TM-----------------ERLTGKDQKISENFYVRGDGTR------------AFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 151 ~~-----------------~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
+| .+.+++++.+.-..+...++.. ...++.+++.++++++||.++.+.
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 99 3344555554321111111100 123478889999999999987554
No 72
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=2.5e-11 Score=113.63 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=89.2
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
+|.+|||+|||||-++..+++. +..+|+++|+|+.||+.+++.+..-+.. .+.+.. ++.+.+ ++++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~----~i~fv~---~dAe~L----Pf~D~s 119 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ----NVEFVV---GDAENL----PFPDNS 119 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc----ceEEEE---echhhC----CCCCCc
Confidence 7899999999999988888887 5569999999999999999988764432 144433 222222 578899
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
||+|.++-.+.+..+++..|+.+.|+| +|||++++....+.
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVl---------KpgG~~~vle~~~p 160 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVL---------KPGGRLLVLEFSKP 160 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhh---------cCCeEEEEEEcCCC
Confidence 999999999999999999999999999 78999888777654
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.32 E-value=5.4e-11 Score=111.48 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=94.2
Q ss_pred HHHHHHHHhcccccc--cchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871 43 KYWDLFYKRHQDRFF--KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120 (523)
Q Consensus 43 ~~Wd~~y~~~~~~f~--~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~ 120 (523)
++|+..|+.....|. +....+...+.. +..+++.+|||+|||.|..+..|+++ +++|+|||+|+.+|+.+.+...
T Consensus 4 ~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~-~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 4 DFWHEKWAENQIGFHQEEVNPLLQKYWPA-LALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENG 80 (218)
T ss_pred hHHHHHHcCCCCCCCCCCCCHHHHHHHHh-hCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcC
Confidence 477777766543332 222333333322 23346789999999999999999998 7789999999999998754221
Q ss_pred -------------cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------cccccccee-eecceE
Q 009871 121 -------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQK-ISENFY 167 (523)
Q Consensus 121 -------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~-~~~~~~ 167 (523)
....++++.++|+.++.. ...+.||.|+- .+++++++. +...+.
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~---~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTA---ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCc---ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 123578999999987621 12357999985 333455532 111111
Q ss_pred Ee--cCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871 168 VR--GDGTRAFYFSNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 168 ~~--~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
.. ..+...+.++.+++.+++.. +|.+..+...
T Consensus 158 ~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 158 YPQEELAGPPFSVSDEEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred eCCccCCCCCCCCCHHHHHHHhcC-CceEEEeeec
Confidence 11 11222345689999999963 3777665543
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.32 E-value=7.4e-11 Score=112.31 Aligned_cols=167 Identities=16% Similarity=0.225 Sum_probs=109.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHH--HHHHhcCCCCCCCceEEEe
Q 009871 317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLA--QNVTANLKPPFLAKLITKR 394 (523)
Q Consensus 317 W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~--~n~~~n~~~~~~~~v~~~~ 394 (523)
|.|...-.+ +..+.....|++|||||||.|..+..++..|++.|+|+|.++..+-+.+ +++..+ ...+....
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lp 171 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELP 171 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcC
Confidence 444433333 2233334699999999999999999999999999999999876544322 222211 11222221
Q ss_pred eecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------
Q 009871 395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------- 461 (523)
Q Consensus 395 ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~------------- 461 (523)
+... .+.. .+.||+|++.-|+||..+.-..++.++..| ++||.+++-...
T Consensus 172 lgvE------~Lp~--~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L---------~~gGeLvLETlvi~g~~~~~L~P~~ 234 (315)
T PF08003_consen 172 LGVE------DLPN--LGAFDTVFSMGVLYHRRSPLDHLKQLKDSL---------RPGGELVLETLVIDGDENTVLVPED 234 (315)
T ss_pred cchh------hccc--cCCcCEEEEeeehhccCCHHHHHHHHHHhh---------CCCCEEEEEEeeecCCCceEEccCC
Confidence 2221 1111 468999999999999999999999999999 668888753322
Q ss_pred c-----C----CChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCc
Q 009871 462 R-----Q----VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 507 (523)
Q Consensus 462 r-----~----~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (523)
| + ++...+...++++||+-.++.....-.. .++.--.|...+++.
T Consensus 235 rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~-~EQR~T~Wm~~~SL~ 288 (315)
T PF08003_consen 235 RYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPTTI-EEQRKTDWMDFQSLE 288 (315)
T ss_pred cccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccCCH-HHhccCCCcCcccHH
Confidence 1 1 2446778889999999888765533332 234444477665543
No 75
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.32 E-value=1.3e-11 Score=110.12 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=60.9
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.++.+|||+|||.|.++.+|.+. ++++.+|||++++.+..|.++. +..+++|+.. .++ .|++++||+|++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rG------v~Viq~Dld~-gL~-~f~d~sFD~VIl 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARG------VSVIQGDLDE-GLA-DFPDQSFDYVIL 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcC------CCEEECCHHH-hHh-hCCCCCccEEeh
Confidence 36899999999999999888875 5889999999999999998863 6789999985 344 489999999999
No 76
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.32 E-value=6.6e-12 Score=123.48 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=88.8
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--cCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--FTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
...++++|||||||+|.++..++..++ ..|+|||+|+.|+.+++.... ....++.+..+++.++ +. ..+||+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l----p~-~~~FD~ 191 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL----HE-LYAFDT 191 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC----CC-CCCcCE
Confidence 446678999999999999999988864 369999999999987654221 1235678888888766 33 348999
Q ss_pred EEE-----------------ccccccceeeecc-eEEecC--------Ce------EEEeeCHHHHHHHHHhCCCcEEEE
Q 009871 150 VTM-----------------ERLTGKDQKISEN-FYVRGD--------GT------RAFYFSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 150 V~~-----------------~~~~~~~~~~~~~-~~~~~~--------g~------~~~~~~~~~l~~ll~~~Gf~~~~~ 197 (523)
|+| .+.+++++.+.-. ....++ +. ..+.++.+++..+++++||..+++
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 999 3445555554321 111111 11 123348999999999999999888
Q ss_pred EeEeeeeee
Q 009871 198 GLCCKQVEN 206 (523)
Q Consensus 198 ~~~~~~~~~ 206 (523)
.........
T Consensus 272 ~~~~~tt~~ 280 (314)
T TIGR00452 272 LDVLKTTPE 280 (314)
T ss_pred EeccCCCHH
Confidence 765554443
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.31 E-value=1.6e-11 Score=109.73 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
+-.++||+|||.|.++..+|.++ .+++++|+++.+++.|++++.. ...|.+...+..+. .++++|
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~--------~P~~~F 107 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEF--------WPEGRF 107 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----------SS-E
T ss_pred ccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCC--------CCCCCe
Confidence 33589999999999999988884 6899999999999999987754 14677777766543 356899
Q ss_pred cEEEEccccCCCCCh---HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------CCChhHHHHHHHHcCCEEEEE
Q 009871 415 EVILGTDVSYIPEAI---LPLFATAKELTASSNKSLREDQQPAFILCHIFR--------QVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~---~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------~~~~~~~~~~~~~~gf~~~~~ 483 (523)
|+|+.+.++|+-... ..+++.+...| .|||.+++++... ..+.+.+.+.+.+.=-+++++
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L---------~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAAL---------APGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTE---------EEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHh---------CCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 999999999997654 45666666677 6799999998762 134466777777775666655
No 78
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.31 E-value=6.5e-11 Score=117.35 Aligned_cols=128 Identities=13% Similarity=-0.026 Sum_probs=96.8
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
++.+|||||||+|.++..+++. +..+|+++|.++.|++.++++...+ ++.+...|..+. ++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-------~i~~i~gD~e~l-------p~~~~s 178 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIIEGDAEDL-------PFPTDY 178 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-------CCeEEeccHHhC-------CCCCCc
Confidence 5679999999999877777665 3468999999999999999876532 234444333221 234568
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------CCChhHHHHHHHHcCC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------QVDEPSMLSAATQCGF 478 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------------~~~~~~~~~~~~~~gf 478 (523)
||+|+++.++.+......+++.+.++| +|||.+++..... ....+++.+.+++.||
T Consensus 179 FDvVIs~~~L~~~~d~~~~L~e~~rvL---------kPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQRGIKEAYRVL---------KIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred eeEEEEcChhhhCCCHHHHHHHHHHhc---------CCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCC
Confidence 999999999988888899999999999 7799987754321 1234677889999999
Q ss_pred EEEEEcC
Q 009871 479 RLVDKWP 485 (523)
Q Consensus 479 ~~~~~~~ 485 (523)
+..++..
T Consensus 250 ~~V~i~~ 256 (340)
T PLN02490 250 KDVKLKR 256 (340)
T ss_pred eEEEEEE
Confidence 9877654
No 79
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.31 E-value=1.3e-10 Score=111.55 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=92.0
Q ss_pred CCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 336 GKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
+.+|||||||+|.++..+++.. ..+|+++|+|+.+++.+++|+..|+. .+...|+.+. +. ....++|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------~~~~~D~~~~--l~---~~~~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------TVHEGDLYDA--LP---TALRGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------EEEEeechhh--cc---hhcCCCE
Confidence 4589999999999988888763 45899999999999999999998752 3444555432 10 1113479
Q ss_pred cEEEEccccCCCC--------------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH
Q 009871 415 EVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 468 (523)
Q Consensus 415 D~Ii~~d~~y~~~--------------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~ 468 (523)
|+|+++....... .+..+++.+.++| +|+|.+++.+... ....
T Consensus 155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L---------~~gG~l~l~~~~~--~~~~ 223 (251)
T TIGR03704 155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL---------APGGHLLVETSER--QAPL 223 (251)
T ss_pred eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc---------CCCCEEEEEECcc--hHHH
Confidence 9999975433111 1347777778888 6799999887543 3457
Q ss_pred HHHHHHHcCCEEEEEcC
Q 009871 469 MLSAATQCGFRLVDKWP 485 (523)
Q Consensus 469 ~~~~~~~~gf~~~~~~~ 485 (523)
+.+.++++||+......
T Consensus 224 v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 224 AVEAFARAGLIARVASS 240 (251)
T ss_pred HHHHHHHCCCCceeeEc
Confidence 88999999998876654
No 80
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.31 E-value=9.6e-12 Score=115.08 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=81.1
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++++....+.++.+.++|+... ++ +++||+
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~ 97 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA----AL-NEDYDF 97 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc----cc-cCCCCE
Confidence 333345689999999999999999987 56899999999999999887644334577788887644 33 357999
Q ss_pred EEE-------------------ccccccceeeecceEEe----cCC-eEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 150 VTM-------------------ERLTGKDQKISENFYVR----GDG-TRAFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 150 V~~-------------------~~~~~~~~~~~~~~~~~----~~g-~~~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
|++ .+.+++++.+.-..... +.| ...+.++.+++.++|. +|+++...
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 988 22234444311100111 111 1123468899999997 68877665
No 81
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.31 E-value=9e-11 Score=112.07 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=116.7
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
.+++.......++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++|+..++. .+.+...++.+.
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--- 107 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL-----KIDYRQTTAEEL--- 107 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC-----ceEEEecCHHHh---
Confidence 4566555445678899999999998887777765 5799999999999999998876543 234444333321
Q ss_pred hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------
Q 009871 404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------- 463 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------- 463 (523)
.....++||+|+++.++.+......+++.+.++| +|+|.++++...+.
T Consensus 108 ---~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L---------~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 108 ---AAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLV---------KPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred ---hhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHc---------CCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 1113468999999999998888999999999999 67999988754221
Q ss_pred --------CChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCccccC
Q 009871 464 --------VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLP 511 (523)
Q Consensus 464 --------~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (523)
.+..++.+.+++.||++....... .+.+...|.-....++.|+
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~ 226 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDITGLH-----YNPLTNRWKLSDDVDVNYM 226 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeeeeeEE-----echhhcceeeccCccchhh
Confidence 123457778899999988774311 2245666766666666664
No 82
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.31 E-value=4.7e-11 Score=119.42 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=95.0
Q ss_pred eEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHH
Q 009871 295 SFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDL 373 (523)
Q Consensus 295 ~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~ 373 (523)
.+.+...+++++...-+.| +.+|.+.+.. ....+|||||||+|.++..++++.+ .+|+++|+|+.|++.
T Consensus 166 ~l~i~~~pgvFs~~~lD~g------t~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~ 235 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVG------SQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES 235 (342)
T ss_pred CEEEEeCCCCCCCCCCCHH------HHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 3667777777765444444 3344444322 2345899999999999988888754 589999999999999
Q ss_pred HHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-----CCChHHHHHHHHHHhhccCCCCC
Q 009871 374 LAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFATAKELTASSNKSLR 448 (523)
Q Consensus 374 ~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~l~~ll~~~~~~~~ 448 (523)
++.|++.|++. . .+...|... . ..++||+|+++..++. ......+++.+.+.|
T Consensus 236 A~~nl~~n~l~---~--~~~~~D~~~--------~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L-------- 293 (342)
T PRK09489 236 SRATLAANGLE---G--EVFASNVFS--------D-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL-------- 293 (342)
T ss_pred HHHHHHHcCCC---C--EEEEccccc--------c-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc--------
Confidence 99999998764 1 222222111 1 1468999999987664 234688999999999
Q ss_pred CCCCcEEEEEEee
Q 009871 449 EDQQPAFILCHIF 461 (523)
Q Consensus 449 ~~~~g~~~l~~~~ 461 (523)
+|||.+++....
T Consensus 294 -kpgG~L~iVan~ 305 (342)
T PRK09489 294 -NSGGELRIVANA 305 (342)
T ss_pred -CcCCEEEEEEeC
Confidence 779999887654
No 83
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.30 E-value=7.6e-11 Score=112.91 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
.++.+|||+|||+|.++..++..++ .+|+++|+++.+++.+++++..++.. ..+.+...+..+. ....
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-------~~~~ 119 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS---GNVEFVQGDAEAL-------PFPD 119 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc---cCeEEEecccccC-------CCCC
Confidence 3678999999999988888888764 79999999999999999998765443 3456665555432 1234
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
+.||+|+++.++.+......+++.+.++| +++|.++++..
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L---------~~gG~li~~~~ 159 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVL---------KPGGRLVILEF 159 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhc---------cCCcEEEEEEe
Confidence 68999999988888889999999999999 67998887643
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.30 E-value=2.5e-11 Score=111.70 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=89.3
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
.+...++.+|||+|||+|.++..+++++|+.+|+|+|+|+.|++.|+++.... ..+++++++|+.. ++ +++||
T Consensus 26 ~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~-~~~~D 99 (187)
T PRK08287 26 KLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----EL-PGKAD 99 (187)
T ss_pred hcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hc-CcCCC
Confidence 34445788999999999999999999988889999999999999999876432 2468888888742 22 35799
Q ss_pred EEEEccccccceeeec--ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEeE
Q 009871 149 IVTMERLTGKDQKISE--NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 149 ~V~~~~~~~~~~~~~~--~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
+|++.........+.. ...++++|.+++.. +.+++.+++++.||..+++...
T Consensus 100 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 100 AIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred EEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEE
Confidence 9998211000000000 12578888876533 5667888999999987665444
No 85
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.29 E-value=1.1e-11 Score=110.00 Aligned_cols=76 Identities=17% Similarity=0.346 Sum_probs=62.6
Q ss_pred CCCCeEEEECCCccccHHHHH-hhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~-~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++.+|||+|||+|.++..++ +.+++.+|+|+|+|++|++.|+++.... ..+++|.++|+.++ +..++ ++||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l--~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL--PQELE-EKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG--CGCSS-TTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc--ccccC-CCeeEEE
Confidence 357899999999999999999 4578899999999999999999976433 34899999999975 21134 7899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 79 ~ 79 (152)
T PF13847_consen 79 S 79 (152)
T ss_dssp E
T ss_pred E
Confidence 9
No 86
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.28 E-value=1.9e-11 Score=119.57 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=87.1
Q ss_pred CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
..++.+|||||||+|..+..+++. .+..+|+|+|+|+.|++.|+++.... ..++++.++|+.++ ++++++||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----PVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----CCCCCceeEE
Confidence 357889999999999988777766 45678999999999999999875332 35789999999877 5677899999
Q ss_pred EEcc---ccccc-eeeec-ceEEecCCeEEE--------------------------eeCHHHHHHHHHhCCCcEEEEEe
Q 009871 151 TMER---LTGKD-QKISE-NFYVRGDGTRAF--------------------------YFSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 151 ~~~~---~~~~~-~~~~~-~~~~~~~g~~~~--------------------------~~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
++.. +.... ..+.. ...++++|.+.+ .++.+++.++|+++||..+++..
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 9811 00000 00000 113445554433 23678899999999999876643
No 87
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=6.1e-12 Score=117.00 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=88.4
Q ss_pred hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeec-cCCccCCCCCCC
Q 009871 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDL-ISDDLSRQISPS 145 (523)
Q Consensus 68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~-~~~~~~~~~~~~ 145 (523)
.+++. .++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.|+++.... ..+++++++|+ ..+ +..++++
T Consensus 34 ~~~~~-~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~ 110 (202)
T PRK00121 34 AELFG-NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL--LDMFPDG 110 (202)
T ss_pred HHHcC-CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH--HHHcCcc
Confidence 34444 3678999999999999999999888889999999999999999876433 25799999999 544 1125678
Q ss_pred ceeEEEEc---ccccc---------ceeeec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcE
Q 009871 146 SIDIVTME---RLTGK---------DQKISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDV 194 (523)
Q Consensus 146 ~fD~V~~~---~~~~~---------~~~~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~ 194 (523)
+||+|++. .+... ...+.. ...++++|.+.+.. ...++.+.+++.|+..
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 99999981 11010 000111 22688899887754 2456777788888754
No 88
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=2.4e-10 Score=112.88 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=108.7
Q ss_pred ceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEE
Q 009871 284 NEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVV 362 (523)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~ 362 (523)
+-+-...|.|.++.+. ++ +-.+..+...++...+..........+|||+|||+|.++..++... ..+|+
T Consensus 92 yi~g~~~F~g~~f~v~--~~--------vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~ 161 (307)
T PRK11805 92 YLTNEAWFCGLEFYVD--ER--------VLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVD 161 (307)
T ss_pred HHcCcceEcCcEEEEC--CC--------CcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEE
Confidence 3444456667666664 22 2223444455555544322111123689999999999988888775 45899
Q ss_pred EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccC--------------CCC-
Q 009871 363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--------------IPE- 427 (523)
Q Consensus 363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y--------------~~~- 427 (523)
++|+|+.+++.|++|+..++.. .++.+...|+.+. ++..+||+|+++.... .+.
T Consensus 162 avDis~~al~~A~~n~~~~~l~---~~i~~~~~D~~~~--------l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~ 230 (307)
T PRK11805 162 AVDISPDALAVAEINIERHGLE---DRVTLIESDLFAA--------LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPEL 230 (307)
T ss_pred EEeCCHHHHHHHHHHHHHhCCC---CcEEEEECchhhh--------CCCCCccEEEECCCCCCccchhhcCHhhccCccc
Confidence 9999999999999999998764 4577776665432 2235799999974321 111
Q ss_pred ----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871 428 ----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 428 ----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~ 483 (523)
.+..+++.+.++| +|||.+++-... +...+.+.+.+.||.....
T Consensus 231 AL~gg~dGl~~~~~i~~~a~~~L---------~pgG~l~~E~g~---~~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 231 ALAAGDDGLDLVRRILAEAPDYL---------TEDGVLVVEVGN---SRVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred eeeCCCchHHHHHHHHHHHHHhc---------CCCCEEEEEECc---CHHHHHHHHhhCCCEEEEe
Confidence 2356788888888 679998886543 2334666677777765444
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=2e-11 Score=116.34 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=74.2
Q ss_pred HHHHHHHHhhHHHHHHHHhccccccc-----chhhhHHHHhhhhc---CCCCCeEEEECCCccccHHHHHhhCCCCEEEE
Q 009871 33 WRDKYEREAKKYWDLFYKRHQDRFFK-----DRHYLDKEWGRYFS---GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYA 104 (523)
Q Consensus 33 ~~~~~~~~~~~~Wd~~y~~~~~~f~~-----~~~~l~~~~~~~~~---~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~g 104 (523)
-...|+......|+.+|....-.... ........+..+++ ..++.+|||||||+|..+..+++.. ..|+|
T Consensus 13 v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~ 90 (230)
T PRK07580 13 VRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVA 90 (230)
T ss_pred hhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEE
Confidence 34556666667788877663211110 00111112222232 2457899999999999999999874 56999
Q ss_pred EeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 105 CDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 105 vD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+|+|+.|++.|+++..... .++.+.++|+. ..+++||+|++
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-------~~~~~fD~v~~ 133 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGDLE-------SLLGRFDTVVC 133 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcCch-------hccCCcCEEEE
Confidence 9999999999998754322 47889998853 23578999998
No 90
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.27 E-value=1.2e-10 Score=112.61 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=61.2
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.++..+..+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.. ...++++|+..+ ++++++||
T Consensus 36 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~----~~~~~~fD 105 (251)
T PRK10258 36 AMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESL----PLATATFD 105 (251)
T ss_pred HhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccC----cCCCCcEE
Confidence 3344345789999999999999888876 5679999999999999998742 246889999877 67788999
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 106 ~V~s 109 (251)
T PRK10258 106 LAWS 109 (251)
T ss_pred EEEE
Confidence 9999
No 91
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=1.4e-11 Score=118.52 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.++.+|||||||+|..+..+++. .|+++|+|+|+|+.|++.|+++.... ..+++++++|+.+. ++ ..+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~~--~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----AI--ENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----CC--CCCCE
Confidence 46789999999999999988884 57899999999999999999986432 34799999999865 33 34899
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 129 vv~ 131 (247)
T PRK15451 129 VVL 131 (247)
T ss_pred Eeh
Confidence 988
No 92
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.27 E-value=1.2e-10 Score=110.19 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=94.5
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
+.+++.. ...++.+|||+|||+|.++..++..+ .+|+++|+|+.|+..+++++..++.. .++.+...|+.+.
T Consensus 45 ~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 45 LLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVA---GNVEFEVNDLLSL-- 116 (219)
T ss_pred HHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChhhC--
Confidence 4445532 13578899999999998888887764 48999999999999999998876543 3456655544332
Q ss_pred chhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------------
Q 009871 403 IEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------------- 461 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~------------------- 461 (523)
+.+||+|++.+++++. .....+++.+.+++ ++++.+.+....
T Consensus 117 --------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (219)
T TIGR02021 117 --------CGEFDIVVCMDVLIHYPASDMAKALGHLASLT---------KERVIFTFAPKTAWLAFLKMIGELFPGSSRA 179 (219)
T ss_pred --------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHh---------CCCEEEEECCCchHHHHHHHHHhhCcCcccc
Confidence 2589999999998663 34566777777777 334333321110
Q ss_pred ---cCCChhHHHHHHHHcCCEEEEEcC
Q 009871 462 ---RQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 462 ---r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
+..+.+++.+.+++.||++.....
T Consensus 180 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred cceEEecHHHHHHHHHHcCceeeeeec
Confidence 011345677888899999887743
No 93
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.26 E-value=7.5e-11 Score=106.84 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=78.3
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
++..+++++||+|||.|+.+.+|+++ +..|+|+|+|+.+++.+++.+......++..+.|+.+. .+ ++.||+|
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~----~~-~~~yD~I 98 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF----DF-PEEYDFI 98 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB----S--TTTEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc----cc-cCCcCEE
Confidence 34456789999999999999999999 77799999999999998887655566799999999865 33 3679999
Q ss_pred EE---cccccccee--eecc--eEEecCCe-----------------EEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871 151 TM---ERLTGKDQK--ISEN--FYVRGDGT-----------------RAFYFSNDFLTSLFKENGFDVEELGLCC 201 (523)
Q Consensus 151 ~~---~~~~~~~~~--~~~~--~~~~~~g~-----------------~~~~~~~~~l~~ll~~~Gf~~~~~~~~~ 201 (523)
++ ..|+.+... +..+ -.++++|. +.+.+.+.|+.+.+. ||++++.....
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~ 171 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDV 171 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccc
Confidence 97 122111100 0000 01222222 224457789999997 89987754433
No 94
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.26 E-value=9.4e-11 Score=113.25 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.++.+... ..+...|+... ++.+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~-------~~~~~~ 103 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESL-------PLATAT 103 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccC-------cCCCCc
Confidence 356799999999998877777665 5899999999999999876421 12223333221 234568
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
||+|+++.++.+..+...++..+.++| +|||.++++..
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~L---------k~gG~l~~~~~ 141 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVV---------RPGGVVAFTTL 141 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHc---------CCCeEEEEEeC
Confidence 999999999988889999999999999 77999988753
No 95
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.26 E-value=2e-10 Score=112.75 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=90.0
Q ss_pred CeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871 337 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 415 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD 415 (523)
.+|||+|||+|.++..++...+ .+|+++|+|+.+++.+++|+..++.. .++.+...||.+. +...+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~---~~v~~~~~d~~~~--------~~~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE---HRVEFIQSNLFEP--------LAGQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhcc--------CcCCCcc
Confidence 6899999999998888888754 58999999999999999999998764 4577777777542 1223799
Q ss_pred EEEEccccCC--------------CC-----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871 416 VILGTDVSYI--------------PE-----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 470 (523)
Q Consensus 416 ~Ii~~d~~y~--------------~~-----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~ 470 (523)
+|+++..... +. .+..++..+.++| +|||.+++..... ....+.
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L---------~~gG~l~~e~g~~--q~~~~~ 253 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL---------KPNGFLVCEIGNW--QQKSLK 253 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc---------cCCCEEEEEECcc--HHHHHH
Confidence 9999732211 10 3456777788888 6799988866542 233455
Q ss_pred HHHH-HcCCEEEEE
Q 009871 471 SAAT-QCGFRLVDK 483 (523)
Q Consensus 471 ~~~~-~~gf~~~~~ 483 (523)
+.+. +.||.-..+
T Consensus 254 ~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 254 ELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHhcCCCceeEE
Confidence 5565 467865444
No 96
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.26 E-value=5.8e-12 Score=103.57 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=58.0
Q ss_pred EEEECCCccccHHHHHhhC---CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 79 VLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 79 iLDiGcG~G~~~~~l~~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
|||+|||+|..+..+++.+ |..+++|+|+|++|++.++++......+++++++|+.++ ++.+++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l----~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL----PFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH----HHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC----cccCCCeeEEEE
Confidence 7999999999999999886 447899999999999999998755555899999999876 566789999988
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=2e-10 Score=106.68 Aligned_cols=130 Identities=20% Similarity=0.222 Sum_probs=94.1
Q ss_pred CCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871 331 PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 408 (523)
Q Consensus 331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~ 408 (523)
....++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+++. .++.+...|..+. + +
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~---~~v~~~~~d~~~~--l----~ 106 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL---NNIVLIKGEAPEI--L----F 106 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CCeEEEEechhhh--H----h
Confidence 35568899999999999888887764 3 358999999999999999999998753 3455544443221 1 1
Q ss_pred hcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871 409 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 482 (523)
Q Consensus 409 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~ 482 (523)
.....||.|+..- ....+..+++.+.++| +|+|.+++.. ............+++.||.++.
T Consensus 107 ~~~~~~D~V~~~~---~~~~~~~~l~~~~~~L---------kpgG~lv~~~-~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 107 TINEKFDRIFIGG---GSEKLKEIISASWEII---------KKGGRIVIDA-ILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred hcCCCCCEEEECC---CcccHHHHHHHHHHHc---------CCCcEEEEEe-ecHHHHHHHHHHHHHcCCCeEE
Confidence 1135899999852 3456788999999999 6799988643 3333445678888899986543
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.26 E-value=9.6e-11 Score=101.78 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=110.0
Q ss_pred hhHHHHHHHHhcCCC---CCCCC-eEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871 318 ESAHLMAAVLARNPT---IVAGK-KVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 392 (523)
Q Consensus 318 ~~a~~la~~l~~~~~---~~~~~-~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~ 392 (523)
++...+.+||..+.. ..+.. +|||||||.|.+..-++..+ ....+++|+|+.++++|+.-++.++.+ ..|++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~---n~I~f 122 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS---NEIRF 122 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC---cceeE
Confidence 455667888877643 22344 99999999998888888876 446999999999999999888888886 55899
Q ss_pred EeeecCCCCcchhhhhhcCCCccEEEEc---cccC-C----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC
Q 009871 393 KRLEWGNRDHIEAIKEENNEGFEVILGT---DVSY-I----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 464 (523)
Q Consensus 393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~---d~~y-~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~ 464 (523)
.++|..+++ +..++||+|+-- |.+- . ..-+.-.+..+.++| +|+|.|+|.... .
T Consensus 123 ~q~DI~~~~-------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll---------~~~gifvItSCN--~ 184 (227)
T KOG1271|consen 123 QQLDITDPD-------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLL---------SPGGIFVITSCN--F 184 (227)
T ss_pred EEeeccCCc-------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhcc---------CCCcEEEEEecC--c
Confidence 999988763 235689999833 2111 1 112345678899999 679999987654 5
Q ss_pred ChhHHHHHHHHcCCEEEEEcCC
Q 009871 465 DEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 465 ~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
+.+++.+..+..||++...-+.
T Consensus 185 T~dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 185 TKDELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred cHHHHHHHHhcCCeEEEEeecc
Confidence 6677899999999988766543
No 99
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.26 E-value=4.1e-11 Score=113.37 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
.++.+|||+|||||.++..++.. + ..+|+++|+|+.|++.+++++...+.. ++.+...|-.+ + ++++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~----~i~~v~~da~~---l----p~~d 114 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ----NIEFVQGDAED---L----PFPD 114 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---------S-T
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC----CeeEEEcCHHH---h----cCCC
Confidence 46789999999999888888776 3 358999999999999999998876542 55555443322 2 4567
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD 465 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~ 465 (523)
++||+|+++-.+.+..+....++.+.++| +|||.+++....+...
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVL---------kPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVL---------KPGGRLVILEFSKPRN 159 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHE---------EEEEEEEEEEEEB-SS
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHc---------CCCeEEEEeeccCCCC
Confidence 89999999988888888999999999999 7799998887776543
No 100
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.3e-10 Score=100.90 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=87.6
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
....|++|+|||||||.++..++..|+.+|+++|+++++++.+++|+.... ..+.+...|..+. .
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv~~~----------~ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADVSDF----------R 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcchhhc----------C
Confidence 345899999999999999999999999999999999999999999999822 4567666555443 4
Q ss_pred CCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHH-HHHHHHcCCEEEEEcCC
Q 009871 412 EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM-LSAATQCGFRLVDKWPS 486 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~-~~~~~~~gf~~~~~~~~ 486 (523)
..||.++.+..+=.. ..=.+++....++. -.+|-.+ +.....| ...+...|+.+...|+.
T Consensus 107 ~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s------------~vVYsiH---~a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 107 GKFDTVIMNPPFGSQRRHADRPFLLKALEIS------------DVVYSIH---KAGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred CccceEEECCCCccccccCCHHHHHHHHHhh------------heEEEee---ccccHHHHHHHHHhcCCeEEEEEEE
Confidence 689999988665332 22233333333332 2333333 2233444 55667899999888764
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.26 E-value=5.7e-10 Score=112.30 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=114.2
Q ss_pred CCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-
Q 009871 278 LSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG- 356 (523)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~- 356 (523)
...|-.+-+-.-.|.|.++.+. ++. +..=+.+..+.+.+.... .++.+|||||||+|.++..++..
T Consensus 207 ~gePlqYIlG~~~F~G~~f~V~--p~v---------LIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~ 273 (423)
T PRK14966 207 NGEPVAYILGVREFYGRRFAVN--PNV---------LIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALER 273 (423)
T ss_pred cCCCceeEeeeeeecCcEEEeC--CCc---------cCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhC
Confidence 3444455566667777776654 111 111233445555554432 24569999999999888888765
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------
Q 009871 357 SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------- 427 (523)
Q Consensus 357 ~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------- 427 (523)
...+|+++|+|+.|++.+++|++.++. ++.+...||.+... + ...+||+|+++.......
T Consensus 274 p~a~VtAVDiS~~ALe~AreNa~~~g~-----rV~fi~gDl~e~~l-----~-~~~~FDLIVSNPPYI~~~e~~l~~~~v 342 (423)
T PRK14966 274 PDAFVRASDISPPALETARKNAADLGA-----RVEFAHGSWFDTDM-----P-SEGKWDIIVSNPPYIENGDKHLLQGDL 342 (423)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEEcchhcccc-----c-cCCCccEEEECCCCCCcchhhhcchhh
Confidence 456899999999999999999988653 46777777754311 0 134799999976432110
Q ss_pred ----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 428 ----------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 428 ----------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
.+..+++.+.+.| +|+|.+++.... ...+.+.+.+++.||...++..
T Consensus 343 ~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L---------kpgG~lilEiG~--~Q~e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 343 RFEPQIALTDFSDGLSCIRTLAQGAPDRL---------AEGGFLLLEHGF--DQGAAVRGVLAENGFSGVETLP 405 (423)
T ss_pred hcCHHHHhhCCCchHHHHHHHHHHHHHhc---------CCCcEEEEEECc--cHHHHHHHHHHHCCCcEEEEEE
Confidence 2346666677778 679988775533 3345688888889998766543
No 102
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=1.7e-10 Score=113.64 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-CCCceEEEeeecCCCCc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDH 402 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~ldw~~~~~ 402 (523)
.+++.... ..++.+|||||||+|.++..++..+ .+|+++|+|+.|++.+++|+....... ....+.+...|+.+
T Consensus 134 l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--- 208 (315)
T PLN02585 134 LLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--- 208 (315)
T ss_pred HHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---
Confidence 44554322 2367899999999998888888875 589999999999999999987643210 01234454444321
Q ss_pred chhhhhhcCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------
Q 009871 403 IEAIKEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------ 462 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------ 462 (523)
+ .++||+|++.+++++... ...+++.+..+. +|.++++...+
T Consensus 209 ------l-~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~-----------~g~liIs~~p~~~~~~~l~~~g~~~~g~~ 270 (315)
T PLN02585 209 ------L-SGKYDTVTCLDVLIHYPQDKADGMIAHLASLA-----------EKRLIISFAPKTLYYDILKRIGELFPGPS 270 (315)
T ss_pred ------c-CCCcCEEEEcCEEEecCHHHHHHHHHHHHhhc-----------CCEEEEEeCCcchHHHHHHHHHhhcCCCC
Confidence 1 368999999999866432 334555555433 33444443221
Q ss_pred ------CCChhHHHHHHHHcCCEEEEEcC
Q 009871 463 ------QVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 463 ------~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
..+.+++.+.+++.||++.....
T Consensus 271 ~~~r~y~~s~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 271 KATRAYLHAEADVERALKKAGWKVARREM 299 (315)
T ss_pred cCceeeeCCHHHHHHHHHHCCCEEEEEEE
Confidence 01346678888889999876644
No 103
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=6.2e-11 Score=110.28 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=94.0
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hhcCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~~~~ 412 (523)
.+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++|+..++. .++.+...|+. ..+. .+.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----~~v~~~~~d~~-----~~l~~~~~~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----TNLRLLCGDAV-----EVLLDMFPDG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----CCEEEEecCHH-----HHHHHHcCcc
Confidence 46799999999998888887764 35899999999999999999988765 34666655541 1111 13467
Q ss_pred CccEEEEccccCCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871 413 GFEVILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 481 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~--------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~ 481 (523)
+||+|+++-...+.. ..+.+++.+.++| +|+|.++++...+. ....+++.+++.||.+.
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~L---------kpgG~l~i~~~~~~-~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKL---------KPGGEIHFATDWEG-YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHc---------CCCCEEEEEcCCHH-HHHHHHHHHHhCccccc
Confidence 899999863321111 2578999999999 77999999865432 23467888899998876
No 104
>PRK06202 hypothetical protein; Provisional
Probab=99.24 E-value=3.8e-11 Score=114.55 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=58.8
Q ss_pred CCCCeEEEECCCccccHHHHHhh----CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.++.+|||||||+|.++..|++. +++.+|+|+|+|+.|++.|+++... .++++.+.+...+ +.++++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l----~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDEL----VAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccc----cccCCCccE
Confidence 56789999999999998888753 4567899999999999999987532 3467777777655 446789999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 133 V~~ 135 (232)
T PRK06202 133 VTS 135 (232)
T ss_pred EEE
Confidence 999
No 105
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.24 E-value=9.1e-11 Score=113.86 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=63.5
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
..++..++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++. .++.++.+|+... .++++||
T Consensus 25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~-----~~~~~fD 95 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASW-----QPPQALD 95 (258)
T ss_pred hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhcc-----CCCCCcc
Confidence 334446778999999999999999999988889999999999999999874 4588999998754 2356899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 96 ~v~~ 99 (258)
T PRK01683 96 LIFA 99 (258)
T ss_pred EEEE
Confidence 9999
No 106
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.24 E-value=1.5e-10 Score=112.96 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCC---CEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPD---VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~---~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
....+|||+|||+|.++..+++..+. ..|+|+|+|+.|++.|+++. +++.+.++|+.++ |+++++||+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l----p~~~~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL----PFADQSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC----CCcCCceeEE
Confidence 35578999999999999999887652 47999999999999998764 4688999999877 7788999999
Q ss_pred EE---ccccccceeeecceEEecCCeEEEe
Q 009871 151 TM---ERLTGKDQKISENFYVRGDGTRAFY 177 (523)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~~~~~g~~~~~ 177 (523)
++ ........+ .++++|.++..
T Consensus 156 ~~~~~~~~~~e~~r-----vLkpgG~li~~ 180 (272)
T PRK11088 156 IRIYAPCKAEELAR-----VVKPGGIVITV 180 (272)
T ss_pred EEecCCCCHHHHHh-----hccCCCEEEEE
Confidence 98 111122222 56777776553
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.24 E-value=5.8e-11 Score=119.42 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=87.6
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-c
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-E 153 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-~ 153 (523)
++.+|||+|||+|.++..++...|+++|+|+|+|+.|++.|+++....+.+++++++|+.+..++ ..++||+|+| .
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~---~~~~FDLIVSNP 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP---SEGKWDIIVSNP 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc---cCCCccEEEECC
Confidence 45689999999999999999888889999999999999999998765556899999998654221 2457999999 1
Q ss_pred cc--------cc------cceeee-------------c--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871 154 RL--------TG------KDQKIS-------------E--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 154 ~~--------~~------~~~~~~-------------~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~ 197 (523)
.+ .. +...+. . ..+++++|...+.. ..+.+.+++++.||..+++
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEE
Confidence 11 00 000000 0 12567888766532 4677999999999986555
No 108
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=3.4e-11 Score=114.29 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=85.3
Q ss_pred CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-- 152 (523)
Q Consensus 77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-- 152 (523)
++|||||||+|..+..+++.+++++|+|+|+|+.+++.|+++.... ..+++++..|+... ++ +++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CC-CCCCCEeehHH
Confidence 3799999999999999999988889999999999999999876432 35789999998755 33 358999998
Q ss_pred ---------------ccccccceeeecceEEe-------cCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871 153 ---------------ERLTGKDQKISENFYVR-------GDGTRAFYFSNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 153 ---------------~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
.+.+++++.+.-..... ......++.+.+++.+++.++||.+++....
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 23334444432111100 0001123457889999999999998766543
No 109
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.24 E-value=1.7e-10 Score=110.47 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=63.9
Q ss_pred CCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
..++.+|||+|||+|..+..+++.++ ..+|+|+|+|+.+++.++++... ...++.+..+|+.+. ++++++||+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~ 124 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL----PFPDNSFDA 124 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC----CCCCCCccE
Confidence 34578999999999999999998876 68999999999999999997643 235689999999876 456678999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 125 I~~ 127 (239)
T PRK00216 125 VTI 127 (239)
T ss_pred EEE
Confidence 987
No 110
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.23 E-value=2.4e-10 Score=110.61 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
...++.+|||||||+|.++..++... ..+|+++|+|+.|++.++++ .+.+...|..+ . ..
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~---~-----~~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRD---W-----KP 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhh---C-----CC
Confidence 34577899999999998888888774 35899999999999998752 12333322211 1 12
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
.++||+|+++.++++......+++.+.++| +|||.+++.
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L---------kpgG~l~~~ 125 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDEL---------APGSWIAVQ 125 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhC---------CCCcEEEEE
Confidence 458999999999999888999999999999 779998875
No 111
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.22 E-value=2.8e-10 Score=120.02 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=115.8
Q ss_pred CCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCC-----------------------CCC
Q 009871 279 SSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPT-----------------------IVA 335 (523)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~-----------------------~~~ 335 (523)
..+-.|-+-...|.|.+|.|. ..+-.+..++..++-..+..... ..+
T Consensus 69 ~ePlqYI~G~~~F~g~~f~V~----------~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
T PRK01544 69 HEPIAYITGVKEFYSREFIVN----------KHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDK 138 (506)
T ss_pred CCCHHHHhCcCEEcCcEEEeC----------CCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCC
Confidence 334445555677788877776 34445555655554433322110 113
Q ss_pred CCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 336 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
+.+|||+|||+|.++..+++. ...+|+++|+|+.+++.|++|+..+++. .++.+...||.+. +...+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~---~~v~~~~~D~~~~--------~~~~~f 207 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT---DRIQIIHSNWFEN--------IEKQKF 207 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc---cceeeeecchhhh--------CcCCCc
Confidence 468999999999888887765 4568999999999999999999988764 4566666665432 223589
Q ss_pred cEEEEccccCCC--------------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH
Q 009871 415 EVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 468 (523)
Q Consensus 415 D~Ii~~d~~y~~--------------------------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~ 468 (523)
|+|+++...... +.+..+++.+.++| +|+|.+++.... ...+.
T Consensus 208 DlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L---------~~gG~l~lEig~--~q~~~ 276 (506)
T PRK01544 208 DFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFL---------KPNGKIILEIGF--KQEEA 276 (506)
T ss_pred cEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhc---------cCCCEEEEEECC--chHHH
Confidence 999986432211 12344666777788 679999886543 23456
Q ss_pred HHHHHHHcCCEEEEEc
Q 009871 469 MLSAATQCGFRLVDKW 484 (523)
Q Consensus 469 ~~~~~~~~gf~~~~~~ 484 (523)
+.+.+.+.||....+.
T Consensus 277 v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 277 VTQIFLDHGYNIESVY 292 (506)
T ss_pred HHHHHHhcCCCceEEE
Confidence 7778888999876654
No 112
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=1.4e-10 Score=111.57 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=81.3
Q ss_pred CCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
++.+|||||||+|.++..++.. ...+|+++|+|+.|++.+++|+..++.. .++.+...+..+. +.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~---~~v~~~~~d~~~~---------~~ 123 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRDI---------AI 123 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEeCChhhC---------CC
Confidence 6789999999999877777652 3458999999999999999999886654 3566655444321 22
Q ss_pred CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
..+|+|+++-++++.+ ....+++.+.+.| +|||.++++...
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~L---------kpGG~l~l~e~~ 166 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGL---------NPGGALVLSEKF 166 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhc---------CCCCEEEEEEec
Confidence 4699999987776543 3578999999999 789999998654
No 113
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.22 E-value=3.8e-11 Score=107.49 Aligned_cols=109 Identities=26% Similarity=0.346 Sum_probs=75.4
Q ss_pred CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++. . .+.....+.... +.++++||+|+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~-------~~~~~~~~~~~~----~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--R-------NVVFDNFDAQDP----PFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--T-------TSEEEEEECHTH----HCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--h-------hhhhhhhhhhhh----hccccchhhHhh
Confidence 367899999999999999999777 4479999999999988 1 123333333333 356789999999
Q ss_pred -----------------ccccccceeeecceEE---------------ecCCeEEEeeCHHHHHHHHHhCCCcEEE
Q 009871 153 -----------------ERLTGKDQKISENFYV---------------RGDGTRAFYFSNDFLTSLFKENGFDVEE 196 (523)
Q Consensus 153 -----------------~~~~~~~~~~~~~~~~---------------~~~g~~~~~~~~~~l~~ll~~~Gf~~~~ 196 (523)
.+++++++.+.-.... .+.+....+++.+++..+++++||++++
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 3333444443221111 1111223567999999999999999875
No 114
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.22 E-value=8.7e-11 Score=112.17 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHhhHHHHHHH--HhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEe
Q 009871 29 VSPFWRDKYEREAKKYWDLFY--KRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD 106 (523)
Q Consensus 29 ~~~~~~~~~~~~~~~~Wd~~y--~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD 106 (523)
+.+....+|+..+..|||..- +.+ ..... .....+...+...++.+|||||||+|.++..+++. +++|+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD 77 (233)
T PRK05134 4 VDPAEIAKFSALAARWWDPNGEFKPL-HRINP---LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGID 77 (233)
T ss_pred ccHHHHHHHHHHHHHHhccCCCcHHH-HHhhH---HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEc
Confidence 567788999999999998522 111 00000 00111122223356789999999999999988887 56799999
Q ss_pred CCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-----------------ccccccceeeecceE--
Q 009871 107 FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-----------------ERLTGKDQKISENFY-- 167 (523)
Q Consensus 107 ~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-----------------~~~~~~~~~~~~~~~-- 167 (523)
+++.+++.|+++.......+++...|+.... ...+++||+|++ .+++.+++.+.-...
T Consensus 78 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 78 ASEENIEVARLHALESGLKIDYRQTTAEELA---AEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCHHHhh---hhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 9999999999875433346788888876441 124578999998 222333333221000
Q ss_pred -------------------EecCCeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 168 -------------------VRGDGTRAFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 168 -------------------~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
.........+++.+++.++++++||+++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 155 NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 0001112234588899999999999987663
No 115
>PRK05785 hypothetical protein; Provisional
Probab=99.22 E-value=9.5e-11 Score=110.85 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=58.1
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
++.+|||||||||.++..+++.+ +.+|+|+|+|++|++.|+++. .++++|++++ |+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~l----p~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEAL----PFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------ceEEechhhC----CCCCCCEEEEEe
Confidence 47899999999999999999886 568999999999999998752 3578999887 788999999998
No 116
>PRK08317 hypothetical protein; Provisional
Probab=99.21 E-value=1.3e-10 Score=111.26 Aligned_cols=79 Identities=24% Similarity=0.215 Sum_probs=66.7
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
.+...++.+|||+|||+|..+..+++.+ +.++|+|+|+|+.+++.|+++......++.+.++|+... ++++++||
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D 89 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL----PFPDGSFD 89 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC----CCCCCCce
Confidence 3444678899999999999999999886 678999999999999999987433446789999999876 56678999
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 90 ~v~~ 93 (241)
T PRK08317 90 AVRS 93 (241)
T ss_pred EEEE
Confidence 9998
No 117
>PRK08317 hypothetical protein; Provisional
Probab=99.21 E-value=5.4e-10 Score=107.01 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=87.9
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
.+-+.+.......++.+|||+|||+|.++..++... ..+|+++|+++.+++.++++.... ...+.+...|...
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~ 80 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-----GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-----CCceEEEeccccc
Confidence 334444455556678899999999998888887764 358999999999999998873321 1345555544433
Q ss_pred CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
. ++..++||+|++..++.+..+...+++.+.++| +|||.+++..
T Consensus 81 ~-------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~ 124 (241)
T PRK08317 81 L-------PFPDGSFDAVRSDRVLQHLEDPARALAEIARVL---------RPGGRVVVLD 124 (241)
T ss_pred C-------CCCCCCceEEEEechhhccCCHHHHHHHHHHHh---------cCCcEEEEEe
Confidence 2 123568999999999988888999999999999 6799988765
No 118
>PRK04266 fibrillarin; Provisional
Probab=99.20 E-value=9.1e-11 Score=110.40 Aligned_cols=128 Identities=16% Similarity=0.275 Sum_probs=86.1
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.++..++.+|||+|||+|..+..+++..+..+|+|+|+|+.|++.+.+++... .++.++.+|+.......+++ ++||+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~ 144 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDV 144 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCE
Confidence 35667889999999999999999999876668999999999999777655322 57889999987421111223 46999
Q ss_pred EEE-cccccccee-eec-ceEEecCCeEEEe-------e------CHHHHHHHHHhCCCcEEEEEe
Q 009871 150 VTM-ERLTGKDQK-ISE-NFYVRGDGTRAFY-------F------SNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 150 V~~-~~~~~~~~~-~~~-~~~~~~~g~~~~~-------~------~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
|++ ......... +.. ..+++++|.++.. + ..++..+.++++||+.++...
T Consensus 145 i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 145 IYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred EEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 997 111000000 111 1267888887661 0 112356899999999876654
No 119
>PRK04266 fibrillarin; Provisional
Probab=99.20 E-value=8.8e-10 Score=103.77 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 398 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~ 398 (523)
+.+|+.+ +...+.++.+|||+|||+|.++..++... ..+|+++|+++.|++.+.+++... .++.+...|-.
T Consensus 59 ~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~------~nv~~i~~D~~ 130 (226)
T PRK04266 59 AAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER------KNIIPILADAR 130 (226)
T ss_pred HHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc------CCcEEEECCCC
Confidence 3444444 23455688999999999998888888764 358999999999999887776542 22333333322
Q ss_pred CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh--------hHHH
Q 009871 399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--------PSML 470 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--------~~~~ 470 (523)
+.. ....+ ..+||+|+.. +- .+.....+++.+.++| +|||.++++...|..+. ....
T Consensus 131 ~~~---~~~~l-~~~~D~i~~d-~~-~p~~~~~~L~~~~r~L---------KpGG~lvI~v~~~~~d~~~~~~~~~~~~~ 195 (226)
T PRK04266 131 KPE---RYAHV-VEKVDVIYQD-VA-QPNQAEIAIDNAEFFL---------KDGGYLLLAIKARSIDVTKDPKEIFKEEI 195 (226)
T ss_pred Ccc---hhhhc-cccCCEEEEC-CC-ChhHHHHHHHHHHHhc---------CCCcEEEEEEecccccCcCCHHHHHHHHH
Confidence 110 00112 2469999953 21 1223345689999999 78999999544333221 2345
Q ss_pred HHHHHcCCEEEEEcCC
Q 009871 471 SAATQCGFRLVDKWPS 486 (523)
Q Consensus 471 ~~~~~~gf~~~~~~~~ 486 (523)
+.++++||++.+....
T Consensus 196 ~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 196 RKLEEGGFEILEVVDL 211 (226)
T ss_pred HHHHHcCCeEEEEEcC
Confidence 7788999999988763
No 120
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.20 E-value=3.9e-10 Score=114.79 Aligned_cols=112 Identities=18% Similarity=0.288 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
..+.+.+...+.++.+|||||||+|.++..+++....+|+++|+|+++++.+++++.. . .+.+...|+.+
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l-----~v~~~~~D~~~--- 224 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L-----PVEIRLQDYRD--- 224 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C-----eEEEEECchhh---
Confidence 3445555555668899999999999988888877556899999999999999988742 1 24444444432
Q ss_pred chhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 403 IEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
+ +++||+|++..++.+. ...+.+++.+.++| +|||.+++...
T Consensus 225 ------l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L---------kpGG~lvl~~i 268 (383)
T PRK11705 225 ------L-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL---------KPDGLFLLHTI 268 (383)
T ss_pred ------c-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc---------CCCcEEEEEEc
Confidence 1 3589999999888774 45688999999999 77999988653
No 121
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=7e-11 Score=124.07 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=83.3
Q ss_pred HHHHHHhhHHHHHHHHh--cccccccchhhhHHH------HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEe
Q 009871 35 DKYEREAKKYWDLFYKR--HQDRFFKDRHYLDKE------WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD 106 (523)
Q Consensus 35 ~~~~~~~~~~Wd~~y~~--~~~~f~~~~~~l~~~------~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD 106 (523)
..|++.+..+||-|... ...+|.....++... ...+....++.+|||||||+|..+..+++.+|+.+|+|+|
T Consensus 370 ~~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGID 449 (677)
T PRK06922 370 MMHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGID 449 (677)
T ss_pred hHHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEE
Confidence 35777777888876553 223343333332111 0112333467899999999999999999989999999999
Q ss_pred CCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 107 FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 107 ~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+|+.|++.|+++....+.++.++++|+.++ +..+++++||+|++
T Consensus 450 IS~~MLe~Ararl~~~g~~ie~I~gDa~dL--p~~fedeSFDvVVs 493 (677)
T PRK06922 450 ISENVIDTLKKKKQNEGRSWNVIKGDAINL--SSSFEKESVDTIVY 493 (677)
T ss_pred CCHHHHHHHHHHhhhcCCCeEEEEcchHhC--ccccCCCCEEEEEE
Confidence 999999999987644446788899998765 22367889999987
No 122
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.19 E-value=1.2e-10 Score=106.48 Aligned_cols=116 Identities=18% Similarity=0.278 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
.++.+|||+|||+|.++..+++.++ +|+|+|+|+.|++.++++......++++.++|+.+. ..++||+|++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG------VRGKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc------cCCcccEEEEC
Confidence 4567899999999999999998865 799999999999999998755445688899998643 2458999999
Q ss_pred ccccccc-----------------------ee-eec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEE
Q 009871 153 ERLTGKD-----------------------QK-ISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 153 ~~~~~~~-----------------------~~-~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~ 197 (523)
..+.... .. +.. ..+++++|.+.+.. ...++..++++.||....+
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 1110000 00 110 12678889876542 3678899999999987554
No 123
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.19 E-value=6.4e-10 Score=105.49 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=97.6
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
..+.+|||+|||+|.++..+++.+. +|+++|.++.+++.++.++..++.. .+.+...+..+.. ...+.+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~~------~~~~~~ 112 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL----KIEYRCTSVEDLA------EKGAKS 112 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeCCHHHhh------cCCCCC
Confidence 4678999999999988777777654 6999999999999999998876542 2444433332210 011368
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------------CC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------VD 465 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------------~~ 465 (523)
||+|+++.++++......+++.+.++| +++|.+++....+. .+
T Consensus 113 ~D~i~~~~~l~~~~~~~~~l~~~~~~L---------~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDPQAFIRACAQLL---------KPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIK 183 (224)
T ss_pred ccEEEehhHHHhCCCHHHHHHHHHHhc---------CCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCC
Confidence 999999999999999999999999999 67898887653211 12
Q ss_pred hhHHHHHHHHcCCEEEEEc
Q 009871 466 EPSMLSAATQCGFRLVDKW 484 (523)
Q Consensus 466 ~~~~~~~~~~~gf~~~~~~ 484 (523)
..++.+.+++.||++.++.
T Consensus 184 ~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 184 PSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HHHHHHHHHHcCCeeeeee
Confidence 3457778889999998764
No 124
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=4.3e-11 Score=106.97 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCC
Q 009871 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (523)
.++-..++.....+|.|+|||+|..+..|++++|++.|+|||-|++||+.|+++. ++++|..+|+.+. -++
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w-----~p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTW-----KPE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhc-----CCC
Confidence 3444455666788999999999999999999999999999999999999998875 6799999999865 356
Q ss_pred CceeEEEE
Q 009871 145 SSIDIVTM 152 (523)
Q Consensus 145 ~~fD~V~~ 152 (523)
..+|++++
T Consensus 91 ~~~dllfa 98 (257)
T COG4106 91 QPTDLLFA 98 (257)
T ss_pred Cccchhhh
Confidence 78999998
No 125
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.19 E-value=2.9e-10 Score=110.34 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=82.2
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
++.+.......++.+|||||||+|.++..++... ..+|+++|+|+.|++.++++.. .+.+...|..+.
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~~-- 88 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIASW-- 88 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhcc--
Confidence 3334344444578899999999998888888764 4689999999999999987642 223332222111
Q ss_pred chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
.+..+||+|+++.++++......+++.+.++| +|||.+++..
T Consensus 89 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L---------kpgG~~~~~~ 130 (258)
T PRK01683 89 ------QPPQALDLIFANASLQWLPDHLELFPRLVSLL---------APGGVLAVQM 130 (258)
T ss_pred ------CCCCCccEEEEccChhhCCCHHHHHHHHHHhc---------CCCcEEEEEC
Confidence 12358999999999988888999999999999 7799988864
No 126
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.18 E-value=6.4e-11 Score=100.11 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=82.2
Q ss_pred CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871 336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 415 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD 415 (523)
|.+|||+|||+|.+...+++.+..+++++|+++.+++.++.|+..++.. .++.+...|+.+.. ..+...+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~~-----~~~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD---DRVEVIVGDARDLP-----EPLPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT---TTEEEEESHHHHHH-----HTCTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC---ceEEEEECchhhch-----hhccCceeE
Confidence 4689999999998888888888679999999999999999999998775 45777666653321 134568999
Q ss_pred EEEEccccCCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 416 VILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 416 ~Ii~~d~~y~~--------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
+|+++...... .....+++.+.++| +|+|.+++...
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~gG~~~~~~~ 116 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLL---------KPGGVLVFITP 116 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHE---------EEEEEEEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHc---------CCCeEEEEEeC
Confidence 99998665532 23568899999999 67999887653
No 127
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.18 E-value=6.8e-11 Score=113.34 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.++.+|||||||+|..+..++++ .|+++|+|+|+|+.|++.|+++.... ..+++++++|+.+. +++ .+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~--~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----EIK--NASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----CCC--CCCE
Confidence 46779999999999999999987 36899999999999999999875432 35789999999876 333 4888
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 126 v~~ 128 (239)
T TIGR00740 126 VIL 128 (239)
T ss_pred Eee
Confidence 887
No 128
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.18 E-value=3.5e-10 Score=107.75 Aligned_cols=127 Identities=19% Similarity=0.222 Sum_probs=87.7
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||+|||+|.++..+++.+. +|+++|+++.|++.++++...++.. .++.+...|+.. ..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~----------~~~~ 127 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA---GNITFEVGDLES----------LLGR 127 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc---cCcEEEEcCchh----------ccCC
Confidence 4678999999999988888887765 5999999999999999998776553 355665555321 1468
Q ss_pred ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------------CCChh
Q 009871 414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------------QVDEP 467 (523)
Q Consensus 414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------------~~~~~ 467 (523)
||+|++.+++++. .....+++.+.+++ + ++.+ +....+ ..+..
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~---------~-~~~~-i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 196 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLT---------R-GSLI-FTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREK 196 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhc---------C-CeEE-EEECCccHHHHHHHHhccccCCccCCCCccccCHH
Confidence 9999999988552 34555666666555 1 3333 332221 01234
Q ss_pred HHHHHHHHcCCEEEEEcC
Q 009871 468 SMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 468 ~~~~~~~~~gf~~~~~~~ 485 (523)
++.+.+++.||++.++..
T Consensus 197 ~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 197 GIRRALAAAGFKVVRTER 214 (230)
T ss_pred HHHHHHHHCCCceEeeee
Confidence 567788889999888765
No 129
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=3.2e-10 Score=105.77 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=99.6
Q ss_pred hhHHHHHHHHhcccccccc--hhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhc
Q 009871 41 AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118 (523)
Q Consensus 41 ~~~~Wd~~y~~~~~~f~~~--~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~ 118 (523)
..++|+..|+.+...|... ..+|...+..+. ..++.+||+.|||.|..+..|+++ +.+|+|+|+|+.+|+.+.+.
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHH
Confidence 3468888888876655322 234445555433 246789999999999999999999 66799999999999998662
Q ss_pred c-------------ccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeecce
Q 009871 119 K-------------DFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISENF 166 (523)
Q Consensus 119 ~-------------~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~ 166 (523)
. ......+++.++|+.+++.. .-..+.||+|+- .+++++++.+.-.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 85 NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1 12246799999999876311 012357999876 34345554443222
Q ss_pred EEec--CCeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 167 YVRG--DGTRAFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 167 ~~~~--~g~~~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
+..+ .+..-|..+.+++.+++.. +|.+..+.
T Consensus 164 ~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~ 196 (226)
T PRK13256 164 MEHDKKSQTPPYSVTQAELIKNFSA-KIKFELID 196 (226)
T ss_pred EecCCCCCCCCCcCCHHHHHHhccC-CceEEEee
Confidence 2111 1222344588999999964 46655444
No 130
>PHA03411 putative methyltransferase; Provisional
Probab=99.18 E-value=1.1e-10 Score=110.78 Aligned_cols=112 Identities=14% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
....+|||+|||+|.++..++.+.++.+|+|+|+|+.|++.|+++. .+++++++|+.+. . .+.+||+|++
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~----~-~~~kFDlIIsN 133 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEF----E-SNEKFDVVISN 133 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhh----c-ccCCCcEEEEc
Confidence 3457899999999999988888766678999999999999999864 4688999999865 2 3468999999
Q ss_pred --------------ccccc--cc-eee------e-cceEEecCCeEEEe----------eCHHHHHHHHHhCCCcE
Q 009871 153 --------------ERLTG--KD-QKI------S-ENFYVRGDGTRAFY----------FSNDFLTSLFKENGFDV 194 (523)
Q Consensus 153 --------------~~~~~--~~-~~~------~-~~~~~~~~g~~~~~----------~~~~~l~~ll~~~Gf~~ 194 (523)
.++.. .+ ..+ . ...++++.|...+. .+.++++++++++||..
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 01100 00 000 0 03367777755432 37899999999999974
No 131
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.18 E-value=7.5e-10 Score=94.39 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871 331 PTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 409 (523)
Q Consensus 331 ~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 409 (523)
....++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++.. ++.+...+.... . ..
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~--~----~~ 84 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS----NIVIVEGDAPEA--L----ED 84 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC----ceEEEecccccc--C----hh
Confidence 344467899999999999888888764 468999999999999999999887653 344443332211 0 01
Q ss_pred cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
...+||+|+.... ......+++.+.++| +|+|.+++..
T Consensus 85 ~~~~~D~v~~~~~---~~~~~~~l~~~~~~L---------k~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGS---GGLLQEILEAIWRRL---------RPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCc---chhHHHHHHHHHHHc---------CCCCEEEEEe
Confidence 1358999998642 345678999999999 7799998764
No 132
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=4.6e-11 Score=113.78 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=97.4
Q ss_pred hHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc
Q 009871 42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF 121 (523)
Q Consensus 42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~ 121 (523)
+.||..||+.....+.....-..+...+.+...++.+|||||||-|.++.++++++ +++|+|+++|+++.+.++++...
T Consensus 39 ~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~ 117 (283)
T COG2230 39 MTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA 117 (283)
T ss_pred CceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH
Confidence 45555555553322221111122233445666899999999999999999999998 88999999999999999997643
Q ss_pred C--CCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeecceEEecCCeE----E-
Q 009871 122 T--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISENFYVRGDGTR----A- 175 (523)
Q Consensus 122 ~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~~~~~~g~~----~- 175 (523)
. ..++++...|..+. .+.||-|+| .+.+++++.+.-..+..++... .
T Consensus 118 ~gl~~~v~v~l~d~rd~-------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~ 190 (283)
T COG2230 118 RGLEDNVEVRLQDYRDF-------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF 190 (283)
T ss_pred cCCCcccEEEecccccc-------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH
Confidence 3 35788888888755 345999999 3334444444322222222110 0
Q ss_pred ---E------eeCHHHHHHHHHhCCCcEEEE
Q 009871 176 ---F------YFSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 176 ---~------~~~~~~l~~ll~~~Gf~~~~~ 197 (523)
| ..+..++.+...++||.+...
T Consensus 191 i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~ 221 (283)
T COG2230 191 IDKYIFPGGELPSISEILELASEAGFVVLDV 221 (283)
T ss_pred HHHhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence 1 125788888889999987654
No 133
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.18 E-value=9.3e-11 Score=108.96 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+++.+|||||||+|..+..|++..++.+|+|||+|+.|++.|+++. .++.+.++|+.+ ++++++||+|++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-----~~~~~sfD~V~~ 111 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-----PFKDNFFDLVLT 111 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-----CCCCCCEEEEEE
Confidence 4667899999999999999988877889999999999999999864 346788888864 467889999988
No 134
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.18 E-value=1.3e-09 Score=109.36 Aligned_cols=172 Identities=20% Similarity=0.184 Sum_probs=120.7
Q ss_pred eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEE
Q 009871 285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVAT 364 (523)
Q Consensus 285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~ 364 (523)
+.+.+...|..+.+..... -.||+-+|. ...-.++... .+|++||+|-|-||+.+..+|..|+++||.+
T Consensus 178 ~~~~i~E~g~kf~v~~~~g------~kTGfFlDq--R~~R~~l~~~---~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V 246 (393)
T COG1092 178 EEVVIEENGVKFLVDLVDG------LKTGFFLDQ--RDNRRALGEL---AAGKRVLNLFSYTGGFSVHAALGGASEVTSV 246 (393)
T ss_pred CcEEEEeCCeEEEEecCCc------ccceeeHHh--HHHHHHHhhh---ccCCeEEEecccCcHHHHHHHhcCCCceEEE
Confidence 3455666777777774322 367755542 2223333322 3599999999999999998888899899999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--cCCCccEEEEccccCC---------CCChHHHH
Q 009871 365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYI---------PEAILPLF 433 (523)
Q Consensus 365 D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~---------~~~~~~l~ 433 (523)
|.|..+|+.+++|++.|++... ++.+ -..+.++-+... ...+||+||.-..-|. ..++..|+
T Consensus 247 D~S~~al~~a~~N~~LNg~~~~--~~~~-----i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~ 319 (393)
T COG1092 247 DLSKRALEWARENAELNGLDGD--RHRF-----IVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLN 319 (393)
T ss_pred eccHHHHHHHHHHHHhcCCCcc--ceee-----ehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHH
Confidence 9999999999999999998632 2222 222333333222 2359999998665554 23678888
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH----HHcCCEEEEE
Q 009871 434 ATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDK 483 (523)
Q Consensus 434 ~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~----~~~gf~~~~~ 483 (523)
..+.++| +|+|.+++|...+..+.+.|.+.+ ...|..+..+
T Consensus 320 ~~~~~iL---------~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 320 DLALRLL---------APGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHHHHc---------CCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 8899999 779999999999888887766544 4455555554
No 135
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.18 E-value=2.6e-10 Score=107.95 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=64.7
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
+...++.+|||+|||+|..+..+++..+. .+++|+|+++.+++.++++.. ...++++..+|+.+. ++++++||+
T Consensus 35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~----~~~~~~~D~ 109 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEAL----PFEDNSFDA 109 (223)
T ss_pred hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcC----CCCCCcEEE
Confidence 33347889999999999999999998765 789999999999999998764 345789999999876 456678999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 110 i~~ 112 (223)
T TIGR01934 110 VTI 112 (223)
T ss_pred EEE
Confidence 988
No 136
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.18 E-value=9.2e-10 Score=104.23 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
.++.+|||+|||+|..+..++..++ .+++++|+++.+++.++++.. .. .++.+...+..+. .+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~---~~i~~~~~d~~~~-------~~~~ 104 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP---LNIEFIQADAEAL-------PFED 104 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC---CCceEEecchhcC-------CCCC
Confidence 3778999999999988888887766 489999999999999988765 11 3445554444332 1234
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
++||+|+++.++.+......+++.+.++| +|||.++++..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~~ 144 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVL---------KPGGRLVILEF 144 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHc---------CCCcEEEEEEe
Confidence 58999999988888888999999999999 67999987654
No 137
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.17 E-value=1.9e-10 Score=110.97 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=109.0
Q ss_pred EEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEc
Q 009871 286 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 365 (523)
Q Consensus 286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D 365 (523)
...+..+|..+.|.... ...||+-+=.. ..=.++..+ .+|++||++-|-||+++..+++.|+.+|+.+|
T Consensus 85 ~~~v~E~gl~f~v~l~~------gqktGlFlDqR--~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD 153 (286)
T PF10672_consen 85 FFTVEENGLKFRVDLTD------GQKTGLFLDQR--ENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVD 153 (286)
T ss_dssp EEEEEETTEEEEEESSS------SSSTSS-GGGH--HHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEE
T ss_pred ceEEEECCEEEEEEcCC------CCcceEcHHHH--hhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEe
Confidence 34577788888887432 24667532211 111233332 37899999999999999998888888999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC------CChHHHHHHHHHH
Q 009871 366 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP------EAILPLFATAKEL 439 (523)
Q Consensus 366 ~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~------~~~~~l~~~l~~l 439 (523)
.|..+++.+++|+..|++.. .++.+...|.-+. +..++ ..++||+||.-..-+.. ..+..|+..+.++
T Consensus 154 ~S~~al~~a~~N~~lNg~~~--~~~~~~~~Dvf~~--l~~~~--~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l 227 (286)
T PF10672_consen 154 SSKRALEWAKENAALNGLDL--DRHRFIQGDVFKF--LKRLK--KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL 227 (286)
T ss_dssp S-HHHHHHHHHHHHHTT-CC--TCEEEEES-HHHH--HHHHH--HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCc--cceEEEecCHHHH--HHHHh--cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999853 4556555443321 21211 24699999986655542 2567788888888
Q ss_pred hhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC
Q 009871 440 TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 477 (523)
Q Consensus 440 l~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g 477 (523)
| +|||.+++|......+.+.|++.+.+.+
T Consensus 228 l---------~~gG~l~~~scs~~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 228 L---------KPGGLLLTCSCSHHISPDFLLEAVAEAA 256 (286)
T ss_dssp E---------EEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred c---------CCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 8 6799999999998888887887776544
No 138
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.17 E-value=4e-10 Score=100.63 Aligned_cols=124 Identities=10% Similarity=0.110 Sum_probs=92.6
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
+|.+|||||||.|.+...+......++.++|++++.+..+.. ++ +.+.+.|..+. +..+++.+|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG-------v~Viq~Dld~g-----L~~f~d~sF 76 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG-------VSVIQGDLDEG-----LADFPDQSF 76 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC-------CCEEECCHHHh-----HhhCCCCCc
Confidence 688999999999988877777666789999999987655543 23 34566665542 345778999
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------------------c
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------------------R 462 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~--------------------------------r 462 (523)
|+||.++++........+++.+.++- ...+++++. |
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRVg------------r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih 144 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRVG------------RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH 144 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHhc------------CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence 99999999998888888888776653 345554443 2
Q ss_pred CCChhHHHHHHHHcCCEEEEEcCC
Q 009871 463 QVDEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 463 ~~~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
..+..+|.+.+++.|+++.+...-
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEE
Confidence 234578999999999999887553
No 139
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.17 E-value=5.6e-10 Score=107.83 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=102.3
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 317 W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
++.+..+.+.+..... ..+.+|||+|||+|.++..++... ..+|+++|+++.+++.++.|+..++.. ++.+...
T Consensus 70 ~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~ 144 (251)
T TIGR03534 70 RPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD----NVTFLQS 144 (251)
T ss_pred CCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEEC
Confidence 4455555555544332 245689999999998888888764 458999999999999999999987663 4666666
Q ss_pred ecCCCCcchhhhhhcCCCccEEEEccccCCCC--------------------------ChHHHHHHHHHHhhccCCCCCC
Q 009871 396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLRE 449 (523)
Q Consensus 396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~l~~ll~~~~~~~~~ 449 (523)
|+.+. +..++||+|+++....... .+..+++.+.++|
T Consensus 145 d~~~~--------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L--------- 207 (251)
T TIGR03534 145 DWFEP--------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL--------- 207 (251)
T ss_pred chhcc--------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc---------
Confidence 65432 2246899999965433211 1236778888888
Q ss_pred CCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 450 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 450 ~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
+|||.+++.... .....+.+.+.++||+...+..
T Consensus 208 ~~gG~~~~~~~~--~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 208 KPGGWLLLEIGY--DQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ccCCEEEEEECc--cHHHHHHHHHHhCCCCceEEEe
Confidence 679999887543 2345678888899998777655
No 140
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=4.9e-11 Score=107.84 Aligned_cols=73 Identities=26% Similarity=0.437 Sum_probs=64.1
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCc-EEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
...+|||+|||+|.++..+++++|..+|+++|+|+.+++.|+++...+... ++++..|+.+. .++++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-----~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-----LPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-----CCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-----ccccceeEEEE
Confidence 678999999999999999999999889999999999999999987655433 99999998753 45789999999
No 141
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.17 E-value=3.9e-10 Score=100.89 Aligned_cols=140 Identities=17% Similarity=0.151 Sum_probs=88.9
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
++...-.++||+|||+|.++..|+.+. -.++++|+|+.+|+.|+++... .++|+|.++|+... .|+++||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~-~~~V~~~~~dvp~~-----~P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG-LPHVEWIQADVPEF-----WPEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT--------SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC-CCCeEEEECcCCCC-----CCCCCeeEE
Confidence 344555789999999999999999995 4699999999999999998753 36899999999754 578899999
Q ss_pred EE---ccccccce---eeec--ceEEecCCeEEEe-------------eCHHHHHHHHHhCCCcEEEEEeEeeeeeeccc
Q 009871 151 TM---ERLTGKDQ---KISE--NFYVRGDGTRAFY-------------FSNDFLTSLFKENGFDVEELGLCCKQVENRAR 209 (523)
Q Consensus 151 ~~---~~~~~~~~---~~~~--~~~~~~~g~~~~~-------------~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~ 209 (523)
++ .-++.... .+.. .-.+.++|.+++. +..+.+..+|.+. |..++...+.....
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~---- 185 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSP---- 185 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SST----
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCCC----
Confidence 99 12221110 0000 0146777877652 4678889999875 66665544432222
Q ss_pred CccceeEEEEEEEEecCC
Q 009871 210 ELVMNRRWVQAVFCSSGG 227 (523)
Q Consensus 210 ~~~~~r~~~~~~~~~~~~ 227 (523)
..-++-++|++|.+
T Consensus 186 ----~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 186 ----NEDCLLARFRNPVS 199 (201)
T ss_dssp ----TSEEEEEEEE--SS
T ss_pred ----CCceEeeeecCCcC
Confidence 24577888988864
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.17 E-value=2.9e-10 Score=105.28 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-- 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-- 152 (523)
++.+|||||||+|.++..+++.. +..++|+|+|++|++.|+++ +++++++|+.+. ++ ++++++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~-l~-~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEG-LE-AFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhc-cc-ccCCCCcCEEEEhh
Confidence 56799999999999998887663 56789999999999998763 367888998641 11 356789999999
Q ss_pred ------------ccccccceeee---cce---------EEe-------------cCCeEEEeeCHHHHHHHHHhCCCcEE
Q 009871 153 ------------ERLTGKDQKIS---ENF---------YVR-------------GDGTRAFYFSNDFLTSLFKENGFDVE 195 (523)
Q Consensus 153 ------------~~~~~~~~~~~---~~~---------~~~-------------~~g~~~~~~~~~~l~~ll~~~Gf~~~ 195 (523)
..+.+..+... .++ +.+ .+.....+++.+++.++++++||+++
T Consensus 84 ~l~~~~d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 84 TLQATRNPEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred HhHcCcCHHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 00111111100 000 000 01112346799999999999999998
Q ss_pred EEEeEeeeeeeccc
Q 009871 196 ELGLCCKQVENRAR 209 (523)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (523)
+.......-.++.+
T Consensus 164 ~~~~~~~~~~~~~~ 177 (194)
T TIGR02081 164 DRAAFDVDGRGGRE 177 (194)
T ss_pred EEEEeccccccccc
Confidence 88766555455544
No 143
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.17 E-value=5.8e-10 Score=106.89 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=82.5
Q ss_pred CCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
++.+|||||||+|.++..++.. ...+|+++|+|+.|++.+++++...... .++.+...|+.+. +.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~~~d~~~~---------~~ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIRHV---------EI 120 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECChhhC---------CC
Confidence 6779999999999877777765 2458999999999999999998764432 3466666555432 12
Q ss_pred CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
..+|+|+++.++++.. ....+++.+.+.| +|||.++++...+.
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L---------kpgG~l~i~d~~~~ 165 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGL---------NPNGVLVLSEKFRF 165 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhc---------CCCeEEEEeecccC
Confidence 4689999988776643 4678999999999 77999999876543
No 144
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.16 E-value=2e-10 Score=112.45 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++.+|||+|||+|.++..+++.+++++|+|+|+|+.|++.|+++....+ .+++++++|+.+ ++++++||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-----ALPGRKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-----ccCCCCccEEE
Confidence 34578999999999999999999888999999999999999999875433 469999999864 23456899999
Q ss_pred Ec-cccc--------c-ce------------------eeec--ceEEecCCeEEEe--eCHHHHHHHHHhCCCcEEEE
Q 009871 152 ME-RLTG--------K-DQ------------------KISE--NFYVRGDGTRAFY--FSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 152 ~~-~~~~--------~-~~------------------~~~~--~~~~~~~g~~~~~--~~~~~l~~ll~~~Gf~~~~~ 197 (523)
+. .+.. . .. .+.. .-+++++|...+- ++.+.+.+++.++||.-...
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCceeee
Confidence 91 1100 0 00 0000 1256777776642 35667888888888765433
No 145
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.16 E-value=3.4e-10 Score=111.35 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.+++++..+++ .+.+...|.... .+ +++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l-----~v~~~~~D~~~~-------~~-~~~f 185 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL-----NIRTGLYDINSA-------SI-QEEY 185 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEechhcc-------cc-cCCc
Confidence 45699999999998888888876 5899999999999999999988665 244444443322 11 4689
Q ss_pred cEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 415 EVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 415 D~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
|+|+++.++++. +..+.+++.+.++| +|||.+++.
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~L---------kpgG~~l~v 222 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHT---------NPGGYNLIV 222 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhc---------CCCcEEEEE
Confidence 999999888764 47889999999999 779986653
No 146
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.16 E-value=5.5e-11 Score=109.98 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
....+|||||||+|.++..+++++|+..|+|+|+|+.|++.|+++.... ..+++++++|+.++. ...++++++|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEE
Confidence 4567999999999999999999999999999999999999998875432 358999999997531 11245679999988
Q ss_pred ---ccccccce---e------eec-ceEEecCCeEEEeeC----HHHHHHHHHhCC-CcEE
Q 009871 153 ---ERLTGKDQ---K------ISE-NFYVRGDGTRAFYFS----NDFLTSLFKENG-FDVE 195 (523)
Q Consensus 153 ---~~~~~~~~---~------~~~-~~~~~~~g~~~~~~~----~~~l~~ll~~~G-f~~~ 195 (523)
..+.+..+ + +.. ...++++|.+.+... .+++.+.+.+.| |+..
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 11111100 0 100 236788998876432 334566666665 6654
No 147
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=5.2e-10 Score=102.98 Aligned_cols=108 Identities=7% Similarity=0.007 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.++.+|||||||+|.++..++++++.+|+++|.++.+++.+++|++.|+.. ++.+...|+.+. + .....+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~D~~~~-----l-~~~~~~ 121 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNTNALSF-----L-AQPGTP 121 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEchHHHH-----H-hhcCCC
Confidence 357799999999998888777777889999999999999999999998763 466665554321 1 112347
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHH--hhccCCCCCCCCCcEEEEEEee
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKEL--TASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~l--l~~~~~~~~~~~~g~~~l~~~~ 461 (523)
||+|+... .|.......+++.+... | .+++.+|+.+..
T Consensus 122 fDlV~~DP-Py~~g~~~~~l~~l~~~~~l---------~~~~iv~ve~~~ 161 (199)
T PRK10909 122 HNVVFVDP-PFRKGLLEETINLLEDNGWL---------ADEALIYVESEV 161 (199)
T ss_pred ceEEEECC-CCCCChHHHHHHHHHHCCCc---------CCCcEEEEEecC
Confidence 99999854 47777777777777663 5 468888887655
No 148
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.15 E-value=2.7e-10 Score=107.82 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=114.4
Q ss_pred HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871 325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 404 (523)
Q Consensus 325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~ 404 (523)
+.+.+|...+.++.|||+|||+|.++..++..|+++|++++.| +|.+.|++-++.|.+. +++.+......+.+
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~---~rItVI~GKiEdie--- 239 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA---DRITVIPGKIEDIE--- 239 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc---ceEEEccCcccccc---
Confidence 4455666778999999999999988777777899999999995 6889999999999776 77887766555442
Q ss_pred hhhhhcCCCccEEEEccc---cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee----cCCChhHHHHHHHHcC
Q 009871 405 AIKEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF----RQVDEPSMLSAATQCG 477 (523)
Q Consensus 405 ~~~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~----r~~~~~~~~~~~~~~g 477 (523)
+ +++.|+||+-.+ +++...++..+.. +++| +|.|..+=.... --.++..+.+.+.++.
T Consensus 240 ----L-PEk~DviISEPMG~mL~NERMLEsYl~A-rk~l---------~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAn 304 (517)
T KOG1500|consen 240 ----L-PEKVDVIISEPMGYMLVNERMLESYLHA-RKWL---------KPNGKMFPTVGDIHLAPFSDEQLYVEQFNKAN 304 (517)
T ss_pred ----C-chhccEEEeccchhhhhhHHHHHHHHHH-Hhhc---------CCCCcccCcccceeecccchHHHHHHHHhhhh
Confidence 2 568999998754 4556666665544 4788 445554422111 1123445677888877
Q ss_pred CEEEEEcCCCCCCCCcchhhcccccCCCCccccCCC-----ceeEEE
Q 009871 478 FRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSP-----ALNIMY 519 (523)
Q Consensus 478 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~ 519 (523)
|-....+. +...+-+-...+++.||++ |++||.
T Consensus 305 FWyQq~fy---------GVdLt~L~g~a~~eYFrQPvVDtFD~Rilm 342 (517)
T KOG1500|consen 305 FWYQQNFY---------GVDLTPLYGSAHQEYFRQPVVDTFDIRILM 342 (517)
T ss_pred hhhhhccc---------cccchhhhhhhhhhhhccccccccccceee
Confidence 77666554 2222224457788888887 778775
No 149
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.15 E-value=1.1e-11 Score=101.57 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=61.4
Q ss_pred EEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEE
Q 009871 340 LELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVIL 418 (523)
Q Consensus 340 LElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii 418 (523)
||+|||+|.++..++.. ...+++++|+|+.|++.+++++...... ....+.+...+... ....++||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND------NFERLRFDVLDLFD---YDPPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS------CCC----SEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc------ceeEEEeecCChhh---cccccccceeh
Confidence 79999999888887777 3458999999999998888887775432 12223333322111 11125999999
Q ss_pred EccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871 419 GTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF 455 (523)
Q Consensus 419 ~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~ 455 (523)
++.++++.+.+..+++.+.++| +|||.+
T Consensus 72 ~~~vl~~l~~~~~~l~~~~~~L---------~pgG~l 99 (99)
T PF08242_consen 72 ASNVLHHLEDIEAVLRNIYRLL---------KPGGIL 99 (99)
T ss_dssp EE-TTS--S-HHHHHHHHTTT----------TSS-EE
T ss_pred hhhhHhhhhhHHHHHHHHHHHc---------CCCCCC
Confidence 9999999999999999999999 678875
No 150
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.14 E-value=2.1e-09 Score=95.41 Aligned_cols=129 Identities=20% Similarity=0.154 Sum_probs=98.2
Q ss_pred CCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871 331 PTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 409 (523)
Q Consensus 331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 409 (523)
..+.+|.+++|+|||||.++..++..++ .+|+++|.++++++..++|++..+. .++.+...+= .+.+.++
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----~n~~vv~g~A-----p~~L~~~ 100 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----DNLEVVEGDA-----PEALPDL 100 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----CcEEEEeccc-----hHhhcCC
Confidence 3456889999999999999999886654 4999999999999999999999875 4555554322 2222222
Q ss_pred cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC-EEEEEc
Q 009871 410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF-RLVDKW 484 (523)
Q Consensus 410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf-~~~~~~ 484 (523)
.+||.|+..- ...++.+++++...| +++|++++-... -......++.+++.|+ ++.++-
T Consensus 101 --~~~daiFIGG----g~~i~~ile~~~~~l---------~~ggrlV~nait-lE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 101 --PSPDAIFIGG----GGNIEEILEAAWERL---------KPGGRLVANAIT-LETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred --CCCCEEEECC----CCCHHHHHHHHHHHc---------CcCCeEEEEeec-HHHHHHHHHHHHHcCCceEEEEE
Confidence 2799999762 278999999999999 679998886543 4445567888999999 776653
No 151
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=9e-10 Score=102.76 Aligned_cols=112 Identities=15% Similarity=0.073 Sum_probs=78.9
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
..++.+.....++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++.. .++.+...|..+.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~d~~~~- 136 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHGDGKRG- 136 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEECCcccC-
Confidence 3344444444577899999999998887777653 358999999999999999999987764 3455555443321
Q ss_pred cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
. ....+||+|++..... .+.+.+.+.| +|||.+++...
T Consensus 137 -~-----~~~~~fD~Ii~~~~~~------~~~~~l~~~L---------~~gG~lvi~~~ 174 (205)
T PRK13944 137 -L-----EKHAPFDAIIVTAAAS------TIPSALVRQL---------KDGGVLVIPVE 174 (205)
T ss_pred -C-----ccCCCccEEEEccCcc------hhhHHHHHhc---------CcCcEEEEEEc
Confidence 1 0135899999885543 2335677888 67999988654
No 152
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.1e-09 Score=95.31 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=94.9
Q ss_pred CCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 336 GKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
..-|||||||+|.++..+++. +...+.+||++|.+++..++.+..|+.. +.+.+-|... .+..++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V~tdl~~--------~l~~~~ 110 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVVRTDLLS--------GLRNES 110 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----cceeehhHHh--------hhccCC
Confidence 457999999999888888776 3558999999999999999999998764 2333322221 233478
Q ss_pred ccEEEEccccCC---------------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHH
Q 009871 414 FEVILGTDVSYI---------------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSA 472 (523)
Q Consensus 414 fD~Ii~~d~~y~---------------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~ 472 (523)
.|+++-+...-- .+..+.|+..+..+| .|.|.+|+....++ ...+++..
T Consensus 111 VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iL---------Sp~Gv~Ylv~~~~N-~p~ei~k~ 180 (209)
T KOG3191|consen 111 VDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDIL---------SPRGVFYLVALRAN-KPKEILKI 180 (209)
T ss_pred ccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhc---------CcCceEEeeehhhc-CHHHHHHH
Confidence 999887632110 123677888888888 67999999877654 45678889
Q ss_pred HHHcCCEEEEEcC
Q 009871 473 ATQCGFRLVDKWP 485 (523)
Q Consensus 473 ~~~~gf~~~~~~~ 485 (523)
++..||.+...+.
T Consensus 181 l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 181 LEKKGYGVRIAMQ 193 (209)
T ss_pred HhhcccceeEEEE
Confidence 9999999988887
No 153
>PRK06202 hypothetical protein; Provisional
Probab=99.13 E-value=6.5e-10 Score=106.00 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCccHHHHHHHhc----C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871 334 VAGKKVLELGCGCGGICSMVAAG----S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 408 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~----~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~ 408 (523)
.++.+|||||||+|.++..++.. + ..+|+++|+++.|++.++++...++. .+...+-. .+ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~---~l----~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-------TFRQAVSD---EL----V 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-------eEEEEecc---cc----c
Confidence 35679999999999887777642 3 24899999999999999887654322 22222211 11 1
Q ss_pred hcCCCccEEEEccccCCCCC--hHHHHHHHHHHh
Q 009871 409 ENNEGFEVILGTDVSYIPEA--ILPLFATAKELT 440 (523)
Q Consensus 409 ~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll 440 (523)
..+++||+|+++.++++... ...+++.+.+++
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~ 158 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALA 158 (232)
T ss_pred ccCCCccEEEECCeeecCChHHHHHHHHHHHHhc
Confidence 13568999999999988655 456888888887
No 154
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.13 E-value=3.3e-10 Score=109.43 Aligned_cols=119 Identities=21% Similarity=0.300 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
..+.+|||+|||+|..+..+++..++.+|+|+|+|+.|++.|+++....+ .+++++++|+.+ ++++++||+|++
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-----PLPGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-----cCcCCceeEEEE
Confidence 34568999999999999999999888899999999999999998764332 468999999874 245689999998
Q ss_pred -cccc---------cccee-------------------eec--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871 153 -ERLT---------GKDQK-------------------ISE--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 153 -~~~~---------~~~~~-------------------~~~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~ 197 (523)
..+. ..... +.. .-+++++|.+.+.. ..+++.++++++||..+.+
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEE
Confidence 1110 00000 000 12568888877643 4567899999999987655
No 155
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.13 E-value=3.1e-10 Score=102.88 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
..+..++||||||.|..+..+|++|. .|+++|.|+.+++.+++-++.++++ +++...|..+.. + +.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~-----i~~~~~Dl~~~~-------~-~~ 93 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD-----IRTRVADLNDFD-------F-PE 93 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T-----EEEEE-BGCCBS---------TT
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce-----eEEEEecchhcc-------c-cC
Confidence 34678999999999999999999986 6999999999999998888776653 666666665542 2 35
Q ss_pred CccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 413 GFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 413 ~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
.||+|++.-++.+ ++.++.+++.++..+ +|||.+++.
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~---------~pGG~~li~ 132 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAAT---------KPGGYNLIV 132 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTE---------EEEEEEEEE
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhc---------CCcEEEEEE
Confidence 8999998766544 667888999999999 679987764
No 156
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.13 E-value=1.7e-10 Score=103.43 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=56.5
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
...-|||||||+|..+..|... +...+|+|+|+.|+++|.+.. ..-.++.+|+-. +-||++++||.|++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e----~egdlil~DMG~---GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERE----LEGDLILCDMGE---GLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhh----hhcCeeeeecCC---CCCCCCCccceEEE
Confidence 4778999999999999888877 577999999999999999742 113577788753 22789999999999
No 157
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.12 E-value=9.5e-10 Score=103.52 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
.+...+.+.....++.+|||+|||+|.++..++.... .+|+++|+++.+++.|++|+..++.. ++.+...|..+
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~----~v~~~~~d~~~ 139 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD----NVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CeEEEECCccc
Confidence 3334444444456889999999999988888887743 36999999999999999999987753 45665544432
Q ss_pred CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
.. ....+||+|+..... ..+...+.+.| +|||++++...
T Consensus 140 ~~-------~~~~~fD~Ii~~~~~------~~~~~~~~~~L---------~~gG~lv~~~~ 178 (215)
T TIGR00080 140 GW-------EPLAPYDRIYVTAAG------PKIPEALIDQL---------KEGGILVMPVG 178 (215)
T ss_pred CC-------cccCCCCEEEEcCCc------ccccHHHHHhc---------CcCcEEEEEEc
Confidence 21 013589999986432 23345677788 67999888653
No 158
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.12 E-value=2.7e-10 Score=109.06 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=62.9
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.+.+|||+|||+|..+..+++.++..+|+|+|+|+.|++.++++.. .++.++.+|+.+. ++++++||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~----~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKL----PLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhC----CCCCCceeEEEE
Confidence 4578999999999999999999888889999999999999988754 3688999999876 567789999999
No 159
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.12 E-value=6.5e-10 Score=105.94 Aligned_cols=134 Identities=18% Similarity=0.146 Sum_probs=88.1
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
.++...+++|||||||+|.++..++++++ ..|+|||.++....+++......+ ..+......++++ |. .++|
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L----p~-~~~F 183 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL----PN-LGAF 183 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc----cc-cCCc
Confidence 34456899999999999999999999964 369999999998877655322221 2233333455544 33 6789
Q ss_pred eEEEE------------------ccccccceeeecceEEe--------cCCeE------EEeeCHHHHHHHHHhCCCcEE
Q 009871 148 DIVTM------------------ERLTGKDQKISENFYVR--------GDGTR------AFYFSNDFLTSLFKENGFDVE 195 (523)
Q Consensus 148 D~V~~------------------~~~~~~~~~~~~~~~~~--------~~g~~------~~~~~~~~l~~ll~~~Gf~~~ 195 (523)
|+|+| ..+...+.-+-+..++. |.++. .|..|...+..+++++||..+
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 99999 22222333333333332 22221 223499999999999999999
Q ss_pred EEEeEeeeeeeccc
Q 009871 196 ELGLCCKQVENRAR 209 (523)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (523)
++........+..+
T Consensus 264 ~~v~~~~Tt~~EQR 277 (315)
T PF08003_consen 264 RCVDVSPTTIEEQR 277 (315)
T ss_pred EEecCccCCHHHhc
Confidence 88776655554444
No 160
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.8e-10 Score=97.30 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
-.++.|+|+|||||.++...+-.++ ..|+|+|+++++++.|+++......++.|+++|+.+. ...||.|++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------CCccceEEEC
Confidence 4677899999999999988887763 6799999999999999999876677899999999866 567898888
Q ss_pred ccccccceeeec-ceE----EecCCeEEEe--eCHHHHHHHHHhCCCcEEEEEe
Q 009871 153 ERLTGKDQKISE-NFY----VRGDGTRAFY--FSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 153 ~~~~~~~~~~~~-~~~----~~~~g~~~~~--~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
..|- ...+-.+ .|. ...+...... -+.+.+.+...+.|+.+.....
T Consensus 116 PPFG-~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~~ 168 (198)
T COG2263 116 PPFG-SQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTHIER 168 (198)
T ss_pred CCCc-cccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEEEEE
Confidence 2220 0000000 000 0001111110 1678899999999998766643
No 161
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.12 E-value=2.2e-10 Score=97.70 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
+...++.+|||+|||+|..+..++++.|+.+|+|+|+|+.|++.|+++.... ..+++++..|+... + +...++||+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~D~ 91 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-L--EDSLPEPDR 91 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-C--hhhcCCCCE
Confidence 3334567999999999999999999988889999999999999999875432 34688888887642 1 122458999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 92 v~~ 94 (124)
T TIGR02469 92 VFI 94 (124)
T ss_pred EEE
Confidence 988
No 162
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.12 E-value=1.9e-10 Score=115.67 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=64.3
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC----CcEEEEEeeccCCccCCCCCC
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~ 144 (523)
+.++.....+|||+|||+|.++..+++++|+.+|+++|+|+.|++.|+++...+. .+++++..|+... +++
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-----~~~ 296 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-----VEP 296 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-----CCC
Confidence 3444444579999999999999999999999999999999999999998764332 3678888887642 345
Q ss_pred CceeEEEE
Q 009871 145 SSIDIVTM 152 (523)
Q Consensus 145 ~~fD~V~~ 152 (523)
.+||+|+|
T Consensus 297 ~~fDlIls 304 (378)
T PRK15001 297 FRFNAVLC 304 (378)
T ss_pred CCEEEEEE
Confidence 68999999
No 163
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.10 E-value=2.7e-10 Score=110.33 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=55.6
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
.+...++.+|||||||-|.++..+++++ +++|+||.+|++..+.|+++.... ..++++..+|..++ +.+|
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------~~~f 128 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------PGKF 128 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------CCCC
Confidence 3455789999999999999999999998 789999999999999999876543 36799999999865 2389
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|.|++
T Consensus 129 D~IvS 133 (273)
T PF02353_consen 129 DRIVS 133 (273)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99999
No 164
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=1.4e-09 Score=121.60 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=106.2
Q ss_pred hhHHHHHHHHhcCCC-CCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCC-----------
Q 009871 318 ESAHLMAAVLARNPT-IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKP----------- 384 (523)
Q Consensus 318 ~~a~~la~~l~~~~~-~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~----------- 384 (523)
+-+..|.+.|...+. .+++.+|||||||+|.+++.+++... .+|+++|+|+.+++.|++|+..|++.
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~ 179 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEG 179 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccc
Confidence 455566666655432 24567999999999999999888753 69999999999999999999998653
Q ss_pred -CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC------------------------------------
Q 009871 385 -PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------------------------ 427 (523)
Q Consensus 385 -~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------------------------ 427 (523)
....++.+...||.+.- . . ...+||+||++...-...
T Consensus 180 ~~l~~rV~f~~sDl~~~~--~---~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 180 KTLLDRVEFYESDLLGYC--R---D-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccEEEEECchhhhc--c---c-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 11246888887876431 0 0 013699999885421100
Q ss_pred --ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH-HHHHHcCCEEEEEcCC
Q 009871 428 --AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKWPS 486 (523)
Q Consensus 428 --~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~-~~~~~~gf~~~~~~~~ 486 (523)
.+..++....++| +|+|.+++-...++ .+.+. +.+++.||+...+|..
T Consensus 254 L~~yr~i~~~a~~~L---------~pgG~l~lEiG~~q--~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 254 LGLIARAVEEGISVI---------KPMGIMIFNMGGRP--GQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHHHHHhc---------cCCCEEEEEECccH--HHHHHHHHHHHCCCCeeEEeee
Confidence 1244556666677 67999888765532 23466 5788899999999985
No 165
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=1.6e-09 Score=106.17 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 396 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld 396 (523)
+.+..+.+++.......++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+. +... .++.+...|
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~---~~i~~~~~d 166 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG---ARVEFLQGD 166 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC---CcEEEEEcc
Confidence 3444555555543334467799999999998888888775 4689999999999999999998 2222 457777777
Q ss_pred cCCCCcchhhhhhcCCCccEEEEccccCCC--------------------------CChHHHHHHHHHHhhccCCCCCCC
Q 009871 397 WGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLRED 450 (523)
Q Consensus 397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------------------~~~~~l~~~l~~ll~~~~~~~~~~ 450 (523)
+.+. +..++||+|+++...... +.+..+++.+.++| +
T Consensus 167 ~~~~--------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L---------k 229 (275)
T PRK09328 167 WFEP--------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL---------K 229 (275)
T ss_pred ccCc--------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc---------c
Confidence 6432 123689999996443211 12356677777888 6
Q ss_pred CCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871 451 QQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 484 (523)
Q Consensus 451 ~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~ 484 (523)
|||.+++.... .....+.+.+.+.||.-..+.
T Consensus 230 ~gG~l~~e~g~--~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 230 PGGWLLLEIGY--DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred cCCEEEEEECc--hHHHHHHHHHHhCCCceeEEe
Confidence 79999886533 223457778888999754443
No 166
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4e-10 Score=109.65 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=58.7
Q ss_pred eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+|||+|||+|.++..++..+|.+.|+|+|+|+.+++.|++|+..++ .++.+++.|+.. +. .++||+|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-----~~-~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-----PL-RGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-----cc-CCceeEEEe
Confidence 7999999999999999999998999999999999999999986654 556666667653 23 338999999
No 167
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=1.2e-09 Score=109.67 Aligned_cols=137 Identities=16% Similarity=0.113 Sum_probs=96.0
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
.|+..+.......++.+|||+|||+|.+...++.. +.+|+++|+++.|++.++.|+..++... +.+...|..+.
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~----i~~~~~D~~~l- 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED----FFVKRGDATKL- 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC----CeEEecchhcC-
Confidence 34555544334457889999999999877665554 4689999999999999999999887752 44443333221
Q ss_pred cchhhhhhcCCCccEEEEccccCCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHH
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS 471 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~----------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~ 471 (523)
++...+||+|+++.. |.. .....+++.+.++| +|||.+++....+ ..+.+
T Consensus 243 ------~~~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~L---------k~gG~lv~~~~~~----~~~~~ 302 (329)
T TIGR01177 243 ------PLSSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVL---------KSEGWIVYAVPTR----IDLES 302 (329)
T ss_pred ------CcccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHc---------cCCcEEEEEEcCC----CCHHH
Confidence 223468999999643 331 12578889999999 6799988876542 23556
Q ss_pred HHHHcCCEEEEEcC
Q 009871 472 AATQCGFRLVDKWP 485 (523)
Q Consensus 472 ~~~~~gf~~~~~~~ 485 (523)
.++++|| +.....
T Consensus 303 ~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 303 LAEDAFR-VVKRFE 315 (329)
T ss_pred HHhhcCc-chheee
Confidence 7888999 766554
No 168
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.09 E-value=5.2e-10 Score=106.14 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=82.3
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEeeccCCccCCCCC-CCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQIS-PSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~-~~~fD~V~ 151 (523)
..+.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++...... ++.+.+.|+.+. +.. +++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL----AEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh----hcCCCCCccEEE
Confidence 357899999999999999888774 4599999999999999987643333 688888888755 222 47899999
Q ss_pred E-----------------ccccccceeeecceE----------------E---ecCC--eEEEeeCHHHHHHHHHhCCCc
Q 009871 152 M-----------------ERLTGKDQKISENFY----------------V---RGDG--TRAFYFSNDFLTSLFKENGFD 193 (523)
Q Consensus 152 ~-----------------~~~~~~~~~~~~~~~----------------~---~~~g--~~~~~~~~~~l~~ll~~~Gf~ 193 (523)
+ .+.+++++.+.-... . .+.+ ....+++.+++.++++++||+
T Consensus 118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 8 222333333221000 0 0011 112345788999999999999
Q ss_pred EEEEE
Q 009871 194 VEELG 198 (523)
Q Consensus 194 ~~~~~ 198 (523)
++++.
T Consensus 198 i~~~~ 202 (224)
T TIGR01983 198 VKDVK 202 (224)
T ss_pred eeeee
Confidence 98764
No 169
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.09 E-value=8e-10 Score=108.32 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=87.9
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.++.+|||+|||+|..+..++...+..+|+|+|+|+.|++.|+++.. ....++.++++|+... +++++||+|++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-----LPGGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----CCCCceeEEEE
Confidence 46779999999999999999999888999999999999999999865 3346799999998542 34578999998
Q ss_pred -ccc---------cccce------eee-------------c--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871 153 -ERL---------TGKDQ------KIS-------------E--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 153 -~~~---------~~~~~------~~~-------------~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~ 197 (523)
..+ ..... .+. . .-+++++|...+-. ..+++.+++.+.||..+.+
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEE
Confidence 111 00000 000 0 12678888877643 4567899999999985544
No 170
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=1.4e-09 Score=102.02 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-C-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
+..+...+.+.....++.+|||+|||+|.++..++... . .+|+++|+++++++.+++|+..++. .++.+...|-
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----~~v~~~~gd~ 136 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----DNVEVIVGDG 136 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCc
Confidence 34444555554556688999999999998887777763 2 5899999999999999999998765 3455554432
Q ss_pred CCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 398 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
... .....+||+|++.... ..+...+.+.| +|||.+++..
T Consensus 137 ~~~-------~~~~~~fD~I~~~~~~------~~~~~~l~~~L---------kpgG~lvi~~ 176 (212)
T PRK13942 137 TLG-------YEENAPYDRIYVTAAG------PDIPKPLIEQL---------KDGGIMVIPV 176 (212)
T ss_pred ccC-------CCcCCCcCEEEECCCc------ccchHHHHHhh---------CCCcEEEEEE
Confidence 211 0124689999986332 22345667788 6799988864
No 171
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=3.2e-10 Score=100.68 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=70.2
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEE-EEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVS-TFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~-~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.......|||||||||..-.. ..--|...||++|+++.|-+.|.+.+.. ...++. |++++.+++ + .++++++|
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l--~-~l~d~s~D 147 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL--P-QLADGSYD 147 (252)
T ss_pred hcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC--c-ccccCCee
Confidence 3334556689999999999633 3334678999999999999999887643 356676 899999877 2 26899999
Q ss_pred EEEE----------ccccccceeeecceEEecCCeEEE
Q 009871 149 IVTM----------ERLTGKDQKISENFYVRGDGTRAF 176 (523)
Q Consensus 149 ~V~~----------~~~~~~~~~~~~~~~~~~~g~~~~ 176 (523)
+|++ .+.+...++ .+||+|..++
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~r-----lLRpgG~iif 180 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRR-----LLRPGGRIIF 180 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHH-----hcCCCcEEEE
Confidence 9999 222233333 5777777665
No 172
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.08 E-value=1.6e-10 Score=104.14 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
.|++.|.... ..+-+++|||||||| +.+....-.+.+.+++|+|..|++.+.+.=-- ..+... +
T Consensus 113 ~l~emI~~~~-~g~F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y-------D~L~~A-------e 176 (287)
T COG4976 113 LLAEMIGKAD-LGPFRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLY-------DTLYVA-------E 176 (287)
T ss_pred HHHHHHHhcc-CCccceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccch-------HHHHHH-------H
Confidence 3445443322 223579999999999 44444444467899999999999988653110 000000 0
Q ss_pred cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------cC-CChh
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQ-VDEP 467 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------r~-~~~~ 467 (523)
...-+....+++||+|+++||+-+...++.++..+..+| +|+|.|.++... |- ....
T Consensus 177 a~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L---------~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~ 247 (287)
T COG4976 177 AVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLL---------APGGLFAFSVETLPDDGGFVLGPSQRYAHSES 247 (287)
T ss_pred HHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhc---------CCCceEEEEecccCCCCCeecchhhhhccchH
Confidence 000011234679999999999999999999999999999 668888776544 11 2345
Q ss_pred HHHHHHHHcCCEEEEEcCC
Q 009871 468 SMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 468 ~~~~~~~~~gf~~~~~~~~ 486 (523)
.+...+...||++..+..+
T Consensus 248 YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 248 YVRALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHHHHhcCceEEEeecc
Confidence 6778889999999988664
No 173
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.08 E-value=5.6e-10 Score=103.66 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=83.2
Q ss_pred cCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
...++.+|||+|||+|.++..+++. .++.+|+|+|+|+.|++.|+++.... ..++.++.+|+.+. + +..+++||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l--~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-L--FTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-H--hhcCCCCC
Confidence 4467889999999999999998876 45678999999999999999876443 35788999988642 1 12246899
Q ss_pred EEEE-c------cccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCcE
Q 009871 149 IVTM-E------RLTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDV 194 (523)
Q Consensus 149 ~V~~-~------~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~ 194 (523)
+|++ . .++....+ .++++|.+++.. +..++...+++.||..
T Consensus 114 ~V~~~~~~~~~~~~l~~~~~-----~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 114 RIFIGGGSEKLKEIISASWE-----IIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred EEEECCCcccHHHHHHHHHH-----HcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 9998 1 11111111 577888876632 3456788888899954
No 174
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.08 E-value=8.1e-10 Score=102.65 Aligned_cols=98 Identities=9% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.|+++.. .+.+...+..+ ++.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~--------~~~~~s 105 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD--------PFKDNF 105 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC--------CCCCCC
Confidence 6779999999999888877776 45689999999999999987642 12333333222 233569
Q ss_pred ccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 414 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 414 fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
||+|+++.++++.. .+..+++.+.+++ ++.++++..
T Consensus 106 fD~V~~~~vL~hl~p~~~~~~l~el~r~~-----------~~~v~i~e~ 143 (204)
T TIGR03587 106 FDLVLTKGVLIHINPDNLPTAYRELYRCS-----------NRYILIAEY 143 (204)
T ss_pred EEEEEECChhhhCCHHHHHHHHHHHHhhc-----------CcEEEEEEe
Confidence 99999999997753 3455566666555 556666554
No 175
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.08 E-value=1e-09 Score=105.12 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
..+.+|||||||+|.++..++..+. .+|+++|+++.+++.++.+... ++.+...|..+. ++.++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~~-------~~~~~ 97 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEKL-------PLEDS 97 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhhC-------CCCCC
Confidence 3457999999999988888888764 4799999999999988875431 334444444332 22356
Q ss_pred CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
+||+|+++.++++..+...+++.+.++| +|+|.+++...
T Consensus 98 ~fD~vi~~~~l~~~~~~~~~l~~~~~~L---------~~~G~l~~~~~ 136 (240)
T TIGR02072 98 SFDLIVSNLALQWCDDLSQALSELARVL---------KPGGLLAFSTF 136 (240)
T ss_pred ceeEEEEhhhhhhccCHHHHHHHHHHHc---------CCCcEEEEEeC
Confidence 8999999999999888999999999999 67999988653
No 176
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=7.2e-10 Score=109.50 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=61.4
Q ss_pred CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.+|||+|||+|.++..++..+|+.+|+|+|+|+.|++.|+++....+ .+++++++|+.+. +++++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-----l~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-----LPGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----CCCCCccEEEE
Confidence 68999999999999999999888999999999999999999875432 4699999998642 34568999999
No 177
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.07 E-value=2.4e-09 Score=111.76 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
+..|.+.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.|++|+..|+.. ++.+...|+.+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~----~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD----NVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEeChHH
Confidence 44555655554444577899999999998888887775 68999999999999999999998763 46777777653
Q ss_pred CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCE
Q 009871 400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 479 (523)
Q Consensus 400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~ 479 (523)
. +.. ..+...+||+|+. |.-|.. ....++.+.++ ++++.+|++..+.....+ +..+.+.||+
T Consensus 357 ~--l~~-~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~~----------~~~~ivyvSCnp~tlaRD--l~~L~~~gY~ 418 (443)
T PRK13168 357 D--FTD-QPWALGGFDKVLL-DPPRAG--AAEVMQALAKL----------GPKRIVYVSCNPATLARD--AGVLVEAGYR 418 (443)
T ss_pred h--hhh-hhhhcCCCCEEEE-CcCCcC--hHHHHHHHHhc----------CCCeEEEEEeChHHhhcc--HHHHhhCCcE
Confidence 2 110 0122457999998 444543 34455555442 457888887655332211 2334467999
Q ss_pred EEEEcC
Q 009871 480 LVDKWP 485 (523)
Q Consensus 480 ~~~~~~ 485 (523)
++++-.
T Consensus 419 l~~i~~ 424 (443)
T PRK13168 419 LKRAGM 424 (443)
T ss_pred EEEEEE
Confidence 998854
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=8.8e-10 Score=103.09 Aligned_cols=151 Identities=18% Similarity=0.254 Sum_probs=92.8
Q ss_pred hHHHHHHHHhcccccccch--hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHh-c
Q 009871 42 KKYWDLFYKRHQDRFFKDR--HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMT-H 118 (523)
Q Consensus 42 ~~~Wd~~y~~~~~~f~~~~--~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~-~ 118 (523)
.++|+..|+.+...|.... ..|...+.. +...++.+||..|||.|..+..|+++ +.+|+|+|+|+.+|+.|.+ +
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~ 79 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEEN 79 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHh
Confidence 4688888888766555322 233333333 44467789999999999999999999 6789999999999999843 2
Q ss_pred cc------------cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeecceE
Q 009871 119 KD------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISENFY 167 (523)
Q Consensus 119 ~~------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~~ 167 (523)
.. ....+++++++|+.+++ +-..++||+|+= .+++++++.+.-..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~---~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 80 NLEPTVTSVGGFKRYQAGRITIYCGDFFELP---PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp TTEEECTTCTTEEEETTSSEEEEES-TTTGG---GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred ccCCCcccccceeeecCCceEEEEcccccCC---hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 21 12356899999998763 112357999987 333344443110001
Q ss_pred EecC---CeEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871 168 VRGD---GTRAFYFSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 168 ~~~~---g~~~~~~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
..+. ...-|..+.+++.++|. .+|++..+..
T Consensus 157 ~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 157 EYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred EcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 0000 01112348899999998 7899887766
No 179
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.07 E-value=8.9e-10 Score=101.02 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-CC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NE 412 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-~~ 412 (523)
..+.+||||+||+|.++..++++|+++|+++|.++.+++.+++|++.|+.. .++.+...|.. ..+..+. ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~---~~~~~~~~D~~-----~~l~~~~~~~ 119 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG---EQAEVVRNSAL-----RALKFLAKKP 119 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc---ccEEEEehhHH-----HHHHHhhccC
Confidence 478899999999999999999999989999999999999999999999875 34455443332 1111121 23
Q ss_pred CccEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEe
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
.+|.||..|..|.......++..+.. +| +++|.+++-+.
T Consensus 120 ~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l---------~~~~iiv~E~~ 160 (189)
T TIGR00095 120 TFDNVIYLDPPFFNGALQALLELCENNWIL---------EDTVLIVVEED 160 (189)
T ss_pred CCceEEEECcCCCCCcHHHHHHHHHHCCCC---------CCCeEEEEEec
Confidence 44555555888988777777776654 34 34666655443
No 180
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.06 E-value=4.6e-09 Score=104.51 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=88.4
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
.+.+.+.....++.+|||+|||+|.++..+++..+ .+|+++|. |.+++.+++|+...+.. .++.+...|..+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~---~rv~~~~~d~~~~-- 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKE-- 211 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc---ceEEEEecCccCC--
Confidence 34444444555778999999999988888888754 48999998 89999999999988765 5677776655432
Q ss_pred chhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 403 IEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
++ ..+|+|+.+.++++.. ....+++.+.+.| +|||.+++....
T Consensus 212 -----~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L---------~pgG~l~i~d~~ 256 (306)
T TIGR02716 212 -----SY--PEADAVLFCRILYSANEQLSTIMCKKAFDAM---------RSGGRLLILDMV 256 (306)
T ss_pred -----CC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhc---------CCCCEEEEEEec
Confidence 11 2479999888887653 3467999999999 779999988653
No 181
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.06 E-value=7.8e-10 Score=108.58 Aligned_cols=71 Identities=25% Similarity=0.459 Sum_probs=61.0
Q ss_pred CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.+|||+|||+|.++..++..+++.+|+|+|+|+.+++.|+++..... .+++++++|+.+ ++++++||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-----PLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-----cCcCCCccEEEE
Confidence 68999999999999999999888899999999999999999875432 359999999864 234458999999
No 182
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.06 E-value=3.8e-09 Score=97.77 Aligned_cols=142 Identities=11% Similarity=0.134 Sum_probs=96.4
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++.+|||+|||+|.++..++......++++|+++++++.++.+ + +.+...+..+. + .++.+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-------~~~~~~d~~~~--l---~~~~~~sf 76 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-------VNVIQGDLDEG--L---EAFPDKSF 76 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-------CeEEEEEhhhc--c---cccCCCCc
Confidence 5679999999999888777766556789999999999887541 1 23333343221 1 11335689
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe--------------------------------ec
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI--------------------------------FR 462 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~--------------------------------~r 462 (523)
|+|+++.++++..+...+++.+.+.++ .++++.. .+
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~------------~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVGR------------HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIH 144 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhCC------------eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcc
Confidence 999999999998888888888877761 1111100 01
Q ss_pred CCChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCC
Q 009871 463 QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGH 506 (523)
Q Consensus 463 ~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (523)
..+..++.+.++++||++.+......+ ..+...-+|||....
T Consensus 145 ~~s~~~~~~ll~~~Gf~v~~~~~~~~~--~~~~~~~~~~~~~~~ 186 (194)
T TIGR02081 145 FCTIADFEDLCGELNLRILDRAAFDVD--GRGGREVRWFPNLRG 186 (194)
T ss_pred cCcHHHHHHHHHHCCCEEEEEEEeccc--cccccccccCccccc
Confidence 234567888999999999887654333 234567789987543
No 183
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=7.1e-09 Score=96.80 Aligned_cols=137 Identities=11% Similarity=0.112 Sum_probs=89.3
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-C-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
.+......-+.++.+|||||||+|.++..+++.. . .+|+++|+++ | +.. ..+.+...|+.+..
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----~~v~~i~~D~~~~~ 104 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----VGVDFLQGDFRDEL 104 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----CCcEEEecCCCChH
Confidence 3333333334578899999999998888888874 2 4899999987 1 111 23667777776543
Q ss_pred cchhhh-hhcCCCccEEEEccccCCCCC-----------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHH
Q 009871 402 HIEAIK-EENNEGFEVILGTDVSYIPEA-----------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM 469 (523)
Q Consensus 402 ~~~~~~-~~~~~~fD~Ii~~d~~y~~~~-----------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~ 469 (523)
.+..+. .+..++||+|+++-..+.... +..+++.+.++| +|||.+++.... ..+..++
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~L---------kpGG~~vi~~~~-~~~~~~~ 174 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVL---------APGGSFVVKVFQ-GEGFDEY 174 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHc---------CCCCEEEEEEec-CcCHHHH
Confidence 222221 244678999999654444221 246788899999 779999986533 4455567
Q ss_pred HHHHHHcCCEEEEEcCC
Q 009871 470 LSAATQCGFRLVDKWPS 486 (523)
Q Consensus 470 ~~~~~~~gf~~~~~~~~ 486 (523)
+..+++ .|.-.++..+
T Consensus 175 l~~l~~-~f~~v~~~Kp 190 (209)
T PRK11188 175 LREIRS-LFTKVKVRKP 190 (209)
T ss_pred HHHHHh-CceEEEEECC
Confidence 766654 4776666654
No 184
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=4.2e-09 Score=100.09 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=85.6
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.+.+|||+|||+|.++..++.+. ..+|+++|+++.|++.+++|.. ++.+...|..+. ....+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~e~--------~~~~k 126 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVFEF--------ESNEK 126 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchhhh--------cccCC
Confidence 34689999999998877776654 5689999999999999988632 223322222111 11358
Q ss_pred ccEEEEccccCCCC--C------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----CChhH
Q 009871 414 FEVILGTDVSYIPE--A------------------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----VDEPS 468 (523)
Q Consensus 414 fD~Ii~~d~~y~~~--~------------------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----~~~~~ 468 (523)
||+|+++...+... . +..++.....+| +|+|.+++|+..++ .+..+
T Consensus 127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L---------~p~G~~~~~yss~~~y~~sl~~~~ 197 (279)
T PHA03411 127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFI---------VPTGSAGFAYSGRPYYDGTMKSNK 197 (279)
T ss_pred CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHhee---------cCCceEEEEEeccccccccCCHHH
Confidence 99999988776521 1 345666666677 56889999887754 34567
Q ss_pred HHHHHHHcCCEEE
Q 009871 469 MLSAATQCGFRLV 481 (523)
Q Consensus 469 ~~~~~~~~gf~~~ 481 (523)
....++++||...
T Consensus 198 y~~~l~~~g~~~~ 210 (279)
T PHA03411 198 YLKWSKQTGLVTY 210 (279)
T ss_pred HHHHHHhcCcEec
Confidence 8889999999874
No 185
>PTZ00146 fibrillarin; Provisional
Probab=99.03 E-value=9.6e-09 Score=98.85 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=98.1
Q ss_pred cccchhHHH-HHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCC
Q 009871 314 LMLWESAHL-MAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFL 387 (523)
Q Consensus 314 ~~~W~~a~~-la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~ 387 (523)
.++|+--.- ||..+.. +..+.++.+|||||||+|..+..++... ...|+++|+++.|++.+...+...
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------ 180 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------ 180 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------
Confidence 678865432 5545533 2345688999999999999888888874 348999999998775554433221
Q ss_pred CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-
Q 009871 388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 466 (523)
Q Consensus 388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~- 466 (523)
.++.....|..... .+ .....+||+|++. + ..++....++..+.++| +|+|.+++....+..+.
T Consensus 181 ~NI~~I~~Da~~p~---~y-~~~~~~vDvV~~D-v-a~pdq~~il~~na~r~L---------KpGG~~vI~ika~~id~g 245 (293)
T PTZ00146 181 PNIVPIIEDARYPQ---KY-RMLVPMVDVIFAD-V-AQPDQARIVALNAQYFL---------KNGGHFIISIKANCIDST 245 (293)
T ss_pred CCCEEEECCccChh---hh-hcccCCCCEEEEe-C-CCcchHHHHHHHHHHhc---------cCCCEEEEEEeccccccC
Confidence 12333333322211 11 1123479999884 4 34566667778899999 77999999765554332
Q ss_pred ---hHH----HHHHHHcCCEEEEEcC
Q 009871 467 ---PSM----LSAATQCGFRLVDKWP 485 (523)
Q Consensus 467 ---~~~----~~~~~~~gf~~~~~~~ 485 (523)
+.. .+.+++.||++.++..
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 233 4668889999888766
No 186
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=7.2e-10 Score=111.20 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=86.9
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
...++.+|||+|||+|.++..++.. +..|+|+|+++.|++.|+++.... ..++.+.++|+.++ ++++++||+|
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l----~~~~~~~D~I 252 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL----PLSSESVDAI 252 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC----CcccCCCCEE
Confidence 3456789999999999998877665 677999999999999999886432 23478999999977 5567899999
Q ss_pred EE-ccc----cccce-------ee-ec-ceEEecCCeEEEeeCH-HHHHHHHHhCCCcEEEEE
Q 009871 151 TM-ERL----TGKDQ-------KI-SE-NFYVRGDGTRAFYFSN-DFLTSLFKENGFDVEELG 198 (523)
Q Consensus 151 ~~-~~~----~~~~~-------~~-~~-~~~~~~~g~~~~~~~~-~~l~~ll~~~Gf~~~~~~ 198 (523)
++ ..+ ..... .+ .. .-.++++|.+.+..+. .++.++++++|| ++...
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR-VVKRF 314 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc-chhee
Confidence 99 111 00100 00 00 1257889988876644 478899999999 65443
No 187
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.02 E-value=9.5e-11 Score=95.90 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=45.5
Q ss_pred EEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
||||||+|.++..+++.+|..+|+|+|+|+.|++.|+++..... .+......+..+. ......++||+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL--FDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-----CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh--hhcccccccceehh
Confidence 79999999999999999999999999999999988888764332 3344444444322 11223369999999
No 188
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.02 E-value=8.5e-10 Score=106.70 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=82.6
Q ss_pred HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871 325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 404 (523)
Q Consensus 325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~ 404 (523)
..+.+|..+++++.|||+|||||.++..+|+.|+++|+++|.| ++.+.+++.+..|+.. ..+++......+.
T Consensus 50 ~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~---~ii~vi~gkvEdi---- 121 (346)
T KOG1499|consen 50 NAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE---DVITVIKGKVEDI---- 121 (346)
T ss_pred HHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc---ceEEEeecceEEE----
Confidence 3455677889999999999999988888888899999999996 5669999999999997 4566655444332
Q ss_pred hhhhhcCCCccEEEEccccCC---CCChHHHHHHHHHHh
Q 009871 405 AIKEENNEGFEVILGTDVSYI---PEAILPLFATAKELT 440 (523)
Q Consensus 405 ~~~~~~~~~fD~Ii~~d~~y~---~~~~~~l~~~l~~ll 440 (523)
.+|.++.|+|++-++-|. ...+..++-.=.+.|
T Consensus 122 ---~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL 157 (346)
T KOG1499|consen 122 ---ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWL 157 (346)
T ss_pred ---ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhcc
Confidence 234579999998876544 667777777778888
No 189
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=1.2e-09 Score=101.90 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=63.3
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCC
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~ 145 (523)
+.+...++.+|||||||+|..+..+++.. +..+|+|+|+++.|++.|+++..... .+++++.+|+.+. .....
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~----~~~~~ 141 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG----LEKHA 141 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC----CccCC
Confidence 44454677899999999999998888874 35689999999999999998764332 3589999999754 22356
Q ss_pred ceeEEEE
Q 009871 146 SIDIVTM 152 (523)
Q Consensus 146 ~fD~V~~ 152 (523)
+||+|++
T Consensus 142 ~fD~Ii~ 148 (205)
T PRK13944 142 PFDAIIV 148 (205)
T ss_pred CccEEEE
Confidence 8999988
No 190
>PRK14967 putative methyltransferase; Provisional
Probab=99.02 E-value=2.3e-09 Score=101.53 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME 153 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (523)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+.++.++++|+... +++++||+|++.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-----~~~~~fD~Vi~n 108 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-----VEFRPFDVVVSN 108 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-----ccCCCeeEEEEC
Confidence 456899999999999999888763 34799999999999999988754445678888888642 456789999991
Q ss_pred -cccccce-----------------------eee--cceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEE
Q 009871 154 -RLTGKDQ-----------------------KIS--ENFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 154 -~~~~~~~-----------------------~~~--~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~ 197 (523)
.+..... .+. ...+++++|.+++.. ...++.+.+++.||.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 1111000 000 012678888877632 4567888888888875433
No 191
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=1.1e-08 Score=94.98 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=94.8
Q ss_pred CcccccchhHHHHHHHHhc--CCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCC
Q 009871 311 STGLMLWESAHLMAAVLAR--NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFL 387 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~--~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~ 387 (523)
+.-.+.|+....+-..+.. +...+++..+||+|||+|.+++.+++. +...|+++|.|+.++.+|.+|++.+++.
T Consensus 122 gVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~--- 198 (328)
T KOG2904|consen 122 GVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS--- 198 (328)
T ss_pred CeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc---
Confidence 3336788887665544443 334456678999999999999888776 5568999999999999999999999987
Q ss_pred CceEEEe----eecCCCCcchhhhhhcCCCccEEEEccccCCCC--------------------------ChHHHHHHHH
Q 009871 388 AKLITKR----LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAK 437 (523)
Q Consensus 388 ~~v~~~~----ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~l~ 437 (523)
+++.+.. .+|.+.. ++..+++|+|+++...-..+ .+-.++.-+.
T Consensus 199 g~i~v~~~~me~d~~~~~------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 199 GRIEVIHNIMESDASDEH------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred CceEEEeccccccccccc------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 5666653 3444432 12357899999986432222 2334445556
Q ss_pred HHhhccCCCCCCCCCcEEEEEEeecCC
Q 009871 438 ELTASSNKSLREDQQPAFILCHIFRQV 464 (523)
Q Consensus 438 ~ll~~~~~~~~~~~~g~~~l~~~~r~~ 464 (523)
++| +|||.+++....|..
T Consensus 273 R~L---------q~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 273 RML---------QPGGFEQLELVERKE 290 (328)
T ss_pred hhc---------ccCCeEEEEeccccc
Confidence 666 668888887775543
No 192
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=1.6e-09 Score=101.53 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=65.0
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCc
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
+.+...++.+|||||||+|..+..+++.. ++.+|+|+|+++.|++.|+++.... ..+++++++|.... ..+.+.
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~----~~~~~~ 145 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG----YEENAP 145 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCcCCC
Confidence 34455678999999999999999888873 4578999999999999999976433 35799999998754 334578
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+|++
T Consensus 146 fD~I~~ 151 (212)
T PRK13942 146 YDRIYV 151 (212)
T ss_pred cCEEEE
Confidence 999988
No 193
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=1.1e-08 Score=94.89 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=86.2
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
...++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++.. ++.+...|..+. + ..+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~----~v~~~~~d~~~~--~---~~~- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK----NVEVIEGSAPEC--L---AQL- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CeEEEECchHHH--H---hhC-
Confidence 44577899999999998888777653 468999999999999999999987653 355544333211 1 111
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHH---HcCCEEEEE
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAAT---QCGFRLVDK 483 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~---~~gf~~~~~ 483 (523)
...+|.|+.. ....+..+++.+.++| +|||.+++...... ......+.++ ..++++.++
T Consensus 107 ~~~~d~v~~~----~~~~~~~~l~~~~~~L---------kpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 107 APAPDRVCIE----GGRPIKEILQAVWQYL---------KPGGRLVATASSLE-GLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred CCCCCEEEEE----CCcCHHHHHHHHHHhc---------CCCeEEEEEeecHH-HHHHHHHHHHhcCCCCceEEEE
Confidence 2346766542 2345788999999999 67999888765421 2222334444 457777666
No 194
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.00 E-value=5.5e-10 Score=91.71 Aligned_cols=90 Identities=19% Similarity=0.308 Sum_probs=65.2
Q ss_pred EEEECCCccHHHHHHHhcC----CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 339 VLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 339 VLElG~G~G~l~~~~a~~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
|||||||+|.....++... ..+++++|+|++|++.++++....+. .+++...|..+. +...++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----~~~~~~~D~~~l-------~~~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----KVRFVQADARDL-------PFSDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----TSEEEESCTTCH-------HHHSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----ceEEEECCHhHC-------cccCCCe
Confidence 7999999998888888764 26999999999999999998877433 456666665431 2235699
Q ss_pred cEEEEccc-cCC--CCChHHHHHHHHHHh
Q 009871 415 EVILGTDV-SYI--PEAILPLFATAKELT 440 (523)
Q Consensus 415 D~Ii~~d~-~y~--~~~~~~l~~~l~~ll 440 (523)
|+|+++.. +.+ .+....+++.+.++|
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l 97 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLL 97 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHh
Confidence 99999544 433 446888999999998
No 195
>PRK14968 putative methyltransferase; Provisional
Probab=98.99 E-value=3.1e-09 Score=97.77 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-c--EEEEEeeccCCccCCCCCCCceeEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-R--VSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~--v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
.++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++++...... + +.++++|+.+ ++++++||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-----PFRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-----cccccCceEE
Confidence 46778999999999999999988 57899999999999999887643322 2 8888988864 2445689999
Q ss_pred EE-cccccc----------------c-------e-eeec-ceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEE
Q 009871 151 TM-ERLTGK----------------D-------Q-KISE-NFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 151 ~~-~~~~~~----------------~-------~-~~~~-~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~ 197 (523)
++ ..+... + . .+.. ..+++++|...+. ...+++.+++.++||.+..+
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 98 111110 0 0 0000 1257788876553 24678999999999987544
No 196
>PRK05785 hypothetical protein; Provisional
Probab=98.99 E-value=4e-09 Score=99.75 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=68.6
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++.+|||||||||.++..++.....+|+++|+|++|++.++.+. .. ...+..+ + ++++++|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~---~~~d~~~---l----p~~d~sf 111 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DK---VVGSFEA---L----PFRDKSF 111 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ce---EEechhh---C----CCCCCCE
Confidence 36799999999998888887774458999999999999987531 11 1112111 1 3456799
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHh
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELT 440 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll 440 (523)
|+|+++.++.+..+.+.+++.+.++|
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvL 137 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVS 137 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999
No 197
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.99 E-value=1.9e-09 Score=101.54 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=65.0
Q ss_pred hhhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCC
Q 009871 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPS 145 (523)
Q Consensus 68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~ 145 (523)
.+.+...++.+|||||||+|..+..|++.. ++.+|+|+|+++.|++.|+++.... ..+++++++|+... ....+
T Consensus 70 ~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~----~~~~~ 145 (215)
T TIGR00080 70 TELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG----WEPLA 145 (215)
T ss_pred HHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC----CcccC
Confidence 344555778999999999999999999884 3578999999999999999876433 35799999998754 22346
Q ss_pred ceeEEEE
Q 009871 146 SIDIVTM 152 (523)
Q Consensus 146 ~fD~V~~ 152 (523)
.||+|++
T Consensus 146 ~fD~Ii~ 152 (215)
T TIGR00080 146 PYDRIYV 152 (215)
T ss_pred CCCEEEE
Confidence 8999987
No 198
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.99 E-value=1.9e-09 Score=103.49 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-cc
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-ER 154 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-~~ 154 (523)
..+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|+++...++ ++++++|+.+. ++.. ..++||+|++ ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~-l~~~-~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDA-LPTA-LRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhh-cchh-cCCCEeEEEECCC
Confidence 458999999999999999988888899999999999999999875432 57899998642 1111 1357999999 11
Q ss_pred ccc--------c-------ce-------------eeec--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEE
Q 009871 155 LTG--------K-------DQ-------------KISE--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVE 195 (523)
Q Consensus 155 ~~~--------~-------~~-------------~~~~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~ 195 (523)
+.. + .. .+.. ..+++++|.+++-+ ..+++..++++.||...
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIAR 236 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCce
Confidence 100 0 00 0000 13678888877654 45667888888998753
No 199
>PLN03075 nicotianamine synthase; Provisional
Probab=98.99 E-value=1.3e-09 Score=105.32 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=59.0
Q ss_pred CCCCeEEEECCCccccHHH--HHhhCCCCEEEEEeCCHHHHHHHHhcccc-C--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFP--LIAAYPDVFVYACDFSPRAVNLVMTHKDF-T--ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~--l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
..+++|+|||||.|.++.. +++.+|+.+++|+|++++|++.|++.... . ..+++|.++|+.+. +...+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~----~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV----TESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc----ccccCCcC
Confidence 4788999999998855333 33458899999999999999999997732 1 36799999999864 22246899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 198 lVF~ 201 (296)
T PLN03075 198 VVFL 201 (296)
T ss_pred EEEE
Confidence 9999
No 200
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.98 E-value=3.8e-09 Score=101.79 Aligned_cols=109 Identities=21% Similarity=0.311 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME 153 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (523)
.++.+|||+|||+|.++..+++.++ .+|+|+|+|+.|++.|+++...+..... ..+. ..+.+||+|++.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~---~~~~-------~~~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELN---VYLP-------QGDLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCce---EEEc-------cCCCCcCEEEEc
Confidence 4678999999999999988776643 3699999999999999998654321100 0111 112279999981
Q ss_pred -------cccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEEE
Q 009871 154 -------RLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 154 -------~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
.+.+...+ .++++|.++.. ...+++.+.+++.||.++...
T Consensus 187 i~~~~~~~l~~~~~~-----~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 187 ILANPLLELAPDLAR-----LLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CcHHHHHHHHHHHHH-----hcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence 12222222 57788877653 246678899999999987653
No 201
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.98 E-value=9.4e-09 Score=91.32 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=84.1
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCC-cee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPS-SID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~-~fD 148 (523)
+.+.++.+++|||||||..+..++..+|.++|+|||-++++++..++|.. ...+++..+.+|+-+. +++. +||
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-----L~~~~~~d 104 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-----LPDLPSPD 104 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh-----hcCCCCCC
Confidence 44578899999999999999999977999999999999999999999874 3468899999998754 1222 799
Q ss_pred EEEE---c---cccccceeeecceEEecCCeEEEe-eC---HHHHHHHHHhCCC-cEEEEE
Q 009871 149 IVTM---E---RLTGKDQKISENFYVRGDGTRAFY-FS---NDFLTSLFKENGF-DVEELG 198 (523)
Q Consensus 149 ~V~~---~---~~~~~~~~~~~~~~~~~~g~~~~~-~~---~~~l~~ll~~~Gf-~~~~~~ 198 (523)
.||. . .++.... ..++++|..+.- -+ .....+.+++.|+ +++.+.
T Consensus 105 aiFIGGg~~i~~ile~~~-----~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 105 AIFIGGGGNIEEILEAAW-----ERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred EEEECCCCCHHHHHHHHH-----HHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEE
Confidence 9988 0 1101111 134555655432 23 3445677788898 554443
No 202
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.98 E-value=1.8e-09 Score=105.00 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
.++.+|||+|||+|.++...++.+ ..+|+|+|++|.+++.|++|...++..-++..... . ....+.||+|++
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~----~~~~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--E----DLVEGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--S----CTCCS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--c----ccccccCCEEEEC
Confidence 567899999999999998888875 34799999999999999999865542223322222 1 233589999999
Q ss_pred ------ccccccceeeecceEEecCCeEEE----eeCHHHHHHHHHhCCCcEEEEE
Q 009871 153 ------ERLTGKDQKISENFYVRGDGTRAF----YFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 153 ------~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
..+.+.... +++++|.++. .-..+++.+.+++ ||.+++..
T Consensus 233 I~~~vL~~l~~~~~~-----~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 233 ILADVLLELAPDIAS-----LLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp S-HHHHHHHHHHCHH-----HEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE
T ss_pred CCHHHHHHHHHHHHH-----hhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE
Confidence 222122222 3555555543 2357788899976 99986554
No 203
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=4.7e-09 Score=100.94 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=81.4
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
+...++.+|||+|||+|.++.+++... +...|+|||+|+.|++...+.+.. ..++.++..|+.... ....+.++||+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh-hhhcccCCCCE
Confidence 344678899999999999999999984 456899999999755333332211 156889999986421 01123458999
Q ss_pred EEEccccccce--eee--cceEEecCCeEEEe---------eCHHHH----HHHHHhCCCcEEEEE
Q 009871 150 VTMERLTGKDQ--KIS--ENFYVRGDGTRAFY---------FSNDFL----TSLFKENGFDVEELG 198 (523)
Q Consensus 150 V~~~~~~~~~~--~~~--~~~~~~~~g~~~~~---------~~~~~l----~~ll~~~Gf~~~~~~ 198 (523)
|++.-. .+.+ .+. ...+++++|.++.. ++++++ .+.|+++||++++..
T Consensus 206 V~~Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v 270 (293)
T PTZ00146 206 IFADVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL 270 (293)
T ss_pred EEEeCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 999111 1111 111 12368888887652 234444 478899999976654
No 204
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.97 E-value=5.1e-09 Score=103.61 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccC
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLIS 135 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~ 135 (523)
+++.+|||+|||+|..+..|++..+ +.+|+|+|+|++|++.|+++.... ..++.++++|+.+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 3567899999999999999998865 578999999999999998875432 2457788999975
No 205
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.97 E-value=1.2e-08 Score=95.80 Aligned_cols=113 Identities=14% Similarity=0.035 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871 321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 400 (523)
Q Consensus 321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~ 400 (523)
..+..++.......++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|+..++.. .+.+...|..+.
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~ 138 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH----NVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC----ceEEEECCcccC
Confidence 3344444444455678899999999998877666664 48999999999999999999887653 355554443221
Q ss_pred CcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 401 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
. ...++||+|++... ...+.+.+.+.| +|||.+++...
T Consensus 139 --~-----~~~~~fD~I~~~~~------~~~~~~~l~~~L---------~~gG~lv~~~~ 176 (212)
T PRK00312 139 --W-----PAYAPFDRILVTAA------APEIPRALLEQL---------KEGGILVAPVG 176 (212)
T ss_pred --C-----CcCCCcCEEEEccC------chhhhHHHHHhc---------CCCcEEEEEEc
Confidence 1 01358999998642 233456677888 67999888765
No 206
>PLN03075 nicotianamine synthase; Provisional
Probab=98.97 E-value=1.1e-08 Score=98.92 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=92.7
Q ss_pred CCCeEEEECCCccHHHHHHHh--c-CCCEEEEEcCChHHHHHHHHHHHh-cCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 335 AGKKVLELGCGCGGICSMVAA--G-SADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~--~-~~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
+.++|+|||||.|.++.++++ . ...+++++|.++++++.|++++.. .++. .++++...|..+... .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~---~rV~F~~~Da~~~~~-------~ 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS---KRMFFHTADVMDVTE-------S 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc---CCcEEEECchhhccc-------c
Confidence 678999999998867655443 2 345899999999999999999864 4443 567887766544210 1
Q ss_pred CCCccEEEEccccCC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh--hHHHHHHHHcCCEEEEEcCC
Q 009871 411 NEGFEVILGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--PSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~-~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--~~~~~~~~~~gf~~~~~~~~ 486 (523)
.+.||+|++.-++|. .+....+++.+.+.| +|||.+++-... .... ....+...-.||++..+..+
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~L---------kPGG~Lvlr~~~-G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHM---------APGALLMLRSAH-GARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhc---------CCCcEEEEeccc-chHhhcCCCCChhhCCCeEEEEEECC
Confidence 358999999955565 489999999999999 779999987532 1111 01112223349999887664
No 207
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.97 E-value=5.5e-09 Score=96.63 Aligned_cols=129 Identities=9% Similarity=0.016 Sum_probs=89.2
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh-hcCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-ENNE 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~-~~~~ 412 (523)
...+|||||||+|.++..++... ...|+++|+++.+++.+++|+..+++. ++.+...|..+. ... ++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~----ni~~i~~d~~~~-----~~~~~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK----NLHVLCGDANEL-----LDKFFPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC----CEEEEccCHHHH-----HHhhCCCC
Confidence 44689999999998888888775 348999999999999999999887653 466655444321 011 2345
Q ss_pred CccEEEEccc-cCCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEEE
Q 009871 413 GFEVILGTDV-SYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLVD 482 (523)
Q Consensus 413 ~fD~Ii~~d~-~y~~~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~~ 482 (523)
.+|.|+.+-. .+... ..+.+++.+.++| +|||.+++....... ...+.+.+.+.+ |+...
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~L---------kpgG~l~~~td~~~~-~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVL---------KKGGVIHFKTDNEPL-FEDMLKVLSENDLFENTS 155 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHh---------CCCCEEEEEeCCHHH-HHHHHHHHHhCCCeEecc
Confidence 8999998622 12111 1267999999999 789999987754321 234566666666 76654
No 208
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.2e-09 Score=103.23 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCc--EEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR--VSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++.+|||+|||+|.++...++.+ ...|+|+|++|.+++.|+.|...+... +.....+... ....+.||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-----~~~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-----VPENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-----hcccCcccEEE
Confidence 478999999999999999998885 346999999999999999988665433 2122222211 12235899999
Q ss_pred E-------ccccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEEEe
Q 009871 152 M-------ERLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 152 ~-------~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
+ ..+.+.... .++++|+++.- -..+.+.+.+.++||.++++..
T Consensus 235 ANILA~vl~~La~~~~~-----~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 235 ANILAEVLVELAPDIKR-----LLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ehhhHHHHHHHHHHHHH-----HcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 9 222222222 45666665541 1356688888899999876643
No 209
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.96 E-value=6.6e-09 Score=103.39 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=61.2
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+...+..+|||||||+|.++..+++++|+.+++++|. +.+++.++++.... ..+++++.+|+.+. +++ .+|
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D 217 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EAD 217 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCC
Confidence 3445678999999999999999999999999999997 79999998876432 35799999999765 333 369
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 218 ~v~~ 221 (306)
T TIGR02716 218 AVLF 221 (306)
T ss_pred EEEe
Confidence 9877
No 210
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.96 E-value=1.7e-09 Score=108.32 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=67.5
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
.+....+..+||||||+|.++..+++++|+..++|+|+++.|++.|.++.... ..++.++++|+..+ ...++++++|
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l--l~~~~~~s~D 194 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL--LELLPSNSVE 194 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh--hhhCCCCcee
Confidence 33335677999999999999999999999999999999999999998876433 36899999998743 1246789999
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.|++
T Consensus 195 ~I~l 198 (390)
T PRK14121 195 KIFV 198 (390)
T ss_pred EEEE
Confidence 9998
No 211
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.96 E-value=7.6e-10 Score=101.04 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=79.3
Q ss_pred CChHHHHHHHHHhhHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCC
Q 009871 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS 108 (523)
Q Consensus 29 ~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S 108 (523)
...+..+.|+..+.+|.-.+|+.-.. .. .....++|||||+|..+..+++++.+ |+|+|+|
T Consensus 4 ~~~~~a~~Y~~ARP~YPtdw~~~ia~----------------~~-~~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s 64 (261)
T KOG3010|consen 4 LFDKQAADYLNARPSYPTDWFKKIAS----------------RT-EGHRLAWDVGTGNGQAARGIAEHYKE--VIATDVS 64 (261)
T ss_pred cccccHHHHhhcCCCCcHHHHHHHHh----------------hC-CCcceEEEeccCCCcchHHHHHhhhh--heeecCC
Confidence 34456777877777777655554110 11 23348999999999888888888877 9999999
Q ss_pred HHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE---------ccccccceeeecceEEecCC-eEEE
Q 009871 109 PRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM---------ERLTGKDQKISENFYVRGDG-TRAF 176 (523)
Q Consensus 109 ~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~---------~~~~~~~~~~~~~~~~~~~g-~~~~ 176 (523)
+.||+.|+++.... .........++..+ .-.++|+|+|+| .+|.+...+ .+|++| ...+
T Consensus 65 ~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L----~g~e~SVDlI~~Aqa~HWFdle~fy~~~~r-----vLRk~Gg~iav 135 (261)
T KOG3010|consen 65 EAMLKVAKKHPPVTYCHTPSTMSSDEMVDL----LGGEESVDLITAAQAVHWFDLERFYKEAYR-----VLRKDGGLIAV 135 (261)
T ss_pred HHHHHHhhcCCCcccccCCccccccccccc----cCCCcceeeehhhhhHHhhchHHHHHHHHH-----HcCCCCCEEEE
Confidence 99999999975321 12222223333322 223899999999 455555555 566665 5555
Q ss_pred ee
Q 009871 177 YF 178 (523)
Q Consensus 177 ~~ 178 (523)
|.
T Consensus 136 W~ 137 (261)
T KOG3010|consen 136 WN 137 (261)
T ss_pred EE
Confidence 43
No 212
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.95 E-value=3e-09 Score=96.79 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=82.4
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
+-++|... ...|.+||||-||||.++..++++|+++|+++|.++.+++.+++|++.-+.. ..+.+...|.
T Consensus 32 lFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~~d~----- 101 (183)
T PF03602_consen 32 LFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIKGDA----- 101 (183)
T ss_dssp HHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEESSH-----
T ss_pred HHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC---cceeeeccCH-----
Confidence 34444433 1589999999999999999999999999999999999999999999986664 2344443322
Q ss_pred chhhhhh--cCCCccEEEEccccCCCCC-hHHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeec
Q 009871 403 IEAIKEE--NNEGFEVILGTDVSYIPEA-ILPLFATAK--ELTASSNKSLREDQQPAFILCHIFR 462 (523)
Q Consensus 403 ~~~~~~~--~~~~fD~Ii~~d~~y~~~~-~~~l~~~l~--~ll~~~~~~~~~~~~g~~~l~~~~r 462 (523)
...+..+ ...+||+|+. |..|.... +..++..+. .+| +++|.+++-+..+
T Consensus 102 ~~~l~~~~~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l---------~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLL---------NEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSE---------EEEEEEEEEEETT
T ss_pred HHHHHhhcccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCC---------CCCEEEEEEecCC
Confidence 2222222 4679999988 88888887 488888887 567 4577777766554
No 213
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.95 E-value=2.2e-08 Score=92.19 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=95.0
Q ss_pred CCCCCCCeEEEECCCccHHHHHHHhc-CC------CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 331 PTIVAGKKVLELGCGCGGICSMVAAG-SA------DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~~------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
.....+.+|||++||||-++..+... .. .+|+..|++|+||+.++++...-.+... .++.+.. ++.+.+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-~~~~w~~---~dAE~L 171 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-SRVEWVE---GDAEDL 171 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-CceEEEe---CCcccC
Confidence 34457799999999999888777664 22 6899999999999999998877444321 2232222 222222
Q ss_pred hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871 404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~ 483 (523)
++++.+||....+--|-+..+++..++++.++| +|||+|++.... ....+.+......+-|.+..+
T Consensus 172 ----pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL---------KpGGrf~cLeFs-kv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 172 ----PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL---------KPGGRFSCLEFS-KVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred ----CCCCCcceeEEEecceecCCCHHHHHHHHHHhc---------CCCcEEEEEEcc-ccccHHHHHHHHhhhhhhhch
Confidence 577889999998877777888999999999999 789998855444 222234444445555666443
No 214
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.94 E-value=2.4e-09 Score=103.72 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=77.0
Q ss_pred CCCeEEEECCCccH----HHHHHHhcC------CCEEEEEcCChHHHHHHHHHHHh----cCCCC---------------
Q 009871 335 AGKKVLELGCGCGG----ICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA----NLKPP--------------- 385 (523)
Q Consensus 335 ~~~~VLElG~G~G~----l~~~~a~~~------~~~V~~~D~~~~~l~~~~~n~~~----n~~~~--------------- 385 (523)
++.+|+|+|||||. ++..++..+ ..+|+|||+|+.||+.|++++.. .+++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 444555432 24899999999999999976421 11110
Q ss_pred ----CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 386 ----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 386 ----~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
....|.+...|..+. +.+.++||+|++..++.+. +....+++.+.++| +|||.+++.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~-------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L---------~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE-------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL---------KPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCC-------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh---------CCCeEEEEEC
Confidence 012455555554432 1235689999999887664 35668999999999 7899999976
Q ss_pred ee
Q 009871 460 IF 461 (523)
Q Consensus 460 ~~ 461 (523)
..
T Consensus 243 ~E 244 (264)
T smart00138 243 SE 244 (264)
T ss_pred cc
Confidence 54
No 215
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.94 E-value=1.8e-09 Score=108.09 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=61.7
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
++....++|||+|||+|.++..+++++|+.+|+++|+|+.|++.|+++...+....+++..|+... .+++||+|
T Consensus 192 l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------~~~~fDlI 265 (342)
T PRK09489 192 LTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------IKGRFDMI 265 (342)
T ss_pred ccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------cCCCccEE
Confidence 333445689999999999999999999888999999999999999987755544556777777532 25789999
Q ss_pred EE
Q 009871 151 TM 152 (523)
Q Consensus 151 ~~ 152 (523)
+|
T Consensus 266 vs 267 (342)
T PRK09489 266 IS 267 (342)
T ss_pred EE
Confidence 99
No 216
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.92 E-value=2.5e-09 Score=103.51 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=57.8
Q ss_pred CCCCeEEEECCCccc----cHHHHHhhCC-----CCEEEEEeCCHHHHHHHHhcccc-----------------------
Q 009871 74 AGRKDVLEVGCGAGN----TIFPLIAAYP-----DVFVYACDFSPRAVNLVMTHKDF----------------------- 121 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~S~~~l~~a~~~~~~----------------------- 121 (523)
..+.+|+|+|||+|. ++..+++.++ +.+|+|+|+|+.||+.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999997 4555666543 57899999999999999985310
Q ss_pred -----CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 122 -----TETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 122 -----~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
...+++|.++|+.+. +++.++||+|+|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~----~~~~~~fD~I~c 209 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAE----SPPLGDFDLIFC 209 (264)
T ss_pred EEChHHhCcCEEeeccCCCC----CCccCCCCEEEe
Confidence 013689999999876 456789999999
No 217
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=5e-09 Score=93.17 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871 338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 417 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I 417 (523)
.|||+|||||..--..--....+||++|.++.|-+.+.+.+..|... ++..+-....+. +.++++.++|+|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~------~~~~fvva~ge~---l~~l~d~s~DtV 149 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL------QVERFVVADGEN---LPQLADGSYDTV 149 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc------ceEEEEeechhc---CcccccCCeeeE
Confidence 68999999994332332234568999999999999999999988543 222222333332 334578899999
Q ss_pred EEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871 418 LGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 462 (523)
Q Consensus 418 i~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r 462 (523)
++.=|+-..++....++.+.++| +|||++++....+
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlL---------RpgG~iifiEHva 185 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLL---------RPGGRIIFIEHVA 185 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhc---------CCCcEEEEEeccc
Confidence 99999999999999999999999 7799998865543
No 218
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=4.6e-09 Score=94.93 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=62.6
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
+...++.+|||+|||+|.++..++++ +.+|+|+|+++.|++.++++... ..+++++++|+.+. ++++.+||.|
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~----~~~~~~~d~v 81 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKF----DLPKLQPYKV 81 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcC----CccccCCCEE
Confidence 33456789999999999999999988 56799999999999999987643 35799999999877 4555679999
Q ss_pred EE
Q 009871 151 TM 152 (523)
Q Consensus 151 ~~ 152 (523)
++
T Consensus 82 i~ 83 (169)
T smart00650 82 VG 83 (169)
T ss_pred EE
Confidence 87
No 219
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.91 E-value=1.4e-08 Score=95.20 Aligned_cols=143 Identities=14% Similarity=0.110 Sum_probs=92.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHH-HHHHHHhcCCCCCCCceEEE
Q 009871 315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDL-LAQNVTANLKPPFLAKLITK 393 (523)
Q Consensus 315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~-~~~n~~~n~~~~~~~~v~~~ 393 (523)
.++.++..|...+.......++++|||+|||||+++..++..|+.+|+++|+++.++.. ++.|..--.. ....+.
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----~~~ni~ 130 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----ERTNIR 130 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe----ecCCcc
Confidence 45677888888888776567899999999999999999999988899999999977764 4433221000 111222
Q ss_pred eeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------
Q 009871 394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------- 462 (523)
Q Consensus 394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r----------- 462 (523)
.++|.+.. . + -..+|+++.+ +..++..+..+| ++ |.+++...+.
T Consensus 131 ~~~~~~~~-~----d--~~~~DvsfiS--------~~~~l~~i~~~l---------~~-~~~~~L~KPqFE~~~~~~~~~ 185 (228)
T TIGR00478 131 YVTPADIF-P----D--FATFDVSFIS--------LISILPELDLLL---------NP-NDLTLLFKPQFEAGREKKNKK 185 (228)
T ss_pred cCCHhHcC-C----C--ceeeeEEEee--------hHhHHHHHHHHh---------Cc-CeEEEEcChHhhhcHhhcCcC
Confidence 44554431 0 1 1367877776 444677888888 44 4444332220
Q ss_pred ---------CCChhHHHHHHHHcCCEEEEEcCC
Q 009871 463 ---------QVDEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 463 ---------~~~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
..-...+...+.+.||++..+.++
T Consensus 186 giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 186 GVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred CeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 111245566677889999887664
No 220
>PRK04457 spermidine synthase; Provisional
Probab=98.91 E-value=5.3e-08 Score=94.16 Aligned_cols=122 Identities=12% Similarity=0.147 Sum_probs=84.2
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
+.++|||||||+|.++..+++.. ..+|+++|+++++++.+++++..+.. ..++.+...|..+ -+.. .+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~---~~rv~v~~~Da~~-----~l~~-~~~~ 136 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN---GERFEVIEADGAE-----YIAV-HRHS 136 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC---CCceEEEECCHHH-----HHHh-CCCC
Confidence 45799999999998888777764 45899999999999999998765432 2456665443221 1111 2458
Q ss_pred ccEEEEccccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc
Q 009871 414 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 476 (523)
Q Consensus 414 fD~Ii~~d~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~ 476 (523)
||+|+.. . |+.. ....+++.+.+.| +|+|++++....+......+++.+++.
T Consensus 137 yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L---------~pgGvlvin~~~~~~~~~~~l~~l~~~ 194 (262)
T PRK04457 137 TDVILVD-G-FDGEGIIDALCTQPFFDDCRNAL---------SSDGIFVVNLWSRDKRYDRYLERLESS 194 (262)
T ss_pred CCEEEEe-C-CCCCCCccccCcHHHHHHHHHhc---------CCCcEEEEEcCCCchhHHHHHHHHHHh
Confidence 9999973 2 3222 2378999999999 779999886554443345566666554
No 221
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.91 E-value=7.5e-09 Score=105.43 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=59.3
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
+...++.+|||||||+|.++..+++.+ +++|+|+|+|++|++.|+++.. ...+++...|...+ +++||+|
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-------~~~fD~I 232 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-------NGQFDRI 232 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc-------CCCCCEE
Confidence 344678899999999999999998775 6789999999999999998763 23578888887643 4689999
Q ss_pred EE
Q 009871 151 TM 152 (523)
Q Consensus 151 ~~ 152 (523)
++
T Consensus 233 vs 234 (383)
T PRK11705 233 VS 234 (383)
T ss_pred EE
Confidence 98
No 222
>PRK06922 hypothetical protein; Provisional
Probab=98.90 E-value=9.2e-09 Score=108.35 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
..++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.++++...++. ++.+...|-.+. . ..+++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~dL---p--~~fed 485 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAINL---S--SSFEK 485 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHhC---c--cccCC
Confidence 3467899999999997777777653 46999999999999999988765432 233333332211 0 01346
Q ss_pred CCccEEEEccccCC-------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 412 EGFEVILGTDVSYI-------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~-------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
++||+|+++.++++ .+....+++.+.++| +|||.+++...
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL---------KPGGrLII~D~ 538 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL---------KPGGRIIIRDG 538 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc---------CCCcEEEEEeC
Confidence 78999999876653 235678899999999 78999999754
No 223
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.90 E-value=5.3e-09 Score=102.79 Aligned_cols=111 Identities=20% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++...+. .++.+...+.. ...+++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~------~~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE------QPIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc------cccCCCceEEE
Confidence 457899999999999998887764 3579999999999999999875432 34555555532 23467899999
Q ss_pred Ec-------cccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEE
Q 009871 152 ME-------RLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 152 ~~-------~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~ 197 (523)
+. .+.....+ .++++|.++.- ...+++.+.+++. |.+++.
T Consensus 231 an~~~~~l~~ll~~~~~-----~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 231 ANILAEVIKELYPQFSR-----LVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred EecCHHHHHHHHHHHHH-----HcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 91 22222222 67788877652 2456677778765 876544
No 224
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.90 E-value=4.3e-09 Score=98.24 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=72.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD 148 (523)
.++.+|||||||+|..+..++++. +..+|+|||+++ |. ...++.++++|+.+... ..++.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---------PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---------CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 567899999999999999999884 457899999998 21 11458999999986420 0124578899
Q ss_pred EEEE---ccccccc------------eeeec-ceEEecCCeEEE-eeCHHHHHHHHHhC--CCcEEEE
Q 009871 149 IVTM---ERLTGKD------------QKISE-NFYVRGDGTRAF-YFSNDFLTSLFKEN--GFDVEEL 197 (523)
Q Consensus 149 ~V~~---~~~~~~~------------~~~~~-~~~~~~~g~~~~-~~~~~~l~~ll~~~--Gf~~~~~ 197 (523)
+|+| ..+.... ..+.. ..+++++|.+++ .+..+.+.+++... .|..+++
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE
Confidence 9998 1110000 00000 226788888776 44444444444432 4665444
No 225
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.89 E-value=3.8e-08 Score=100.30 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=85.2
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++|++.|+.. ++.+...|..+. +.. ...+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~----~~~~~~~d~~~~-----~~~-~~~~~ 301 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD----NLSFAALDSAKF-----ATA-QMSAP 301 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC----cEEEEECCHHHH-----HHh-cCCCC
Confidence 56799999999998888888765 68999999999999999999998763 456655444221 001 12469
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
|+|+.. .-+. .....+++.+.. + +|++.+|++........ ++... .||++.++-.
T Consensus 302 D~vi~D-PPr~-G~~~~~l~~l~~-~---------~p~~ivyvsc~p~TlaR-Dl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 302 ELVLVN-PPRR-GIGKELCDYLSQ-M---------APKFILYSSCNAQTMAK-DIAEL---SGYQIERVQL 356 (374)
T ss_pred CEEEEC-CCCC-CCcHHHHHHHHh-c---------CCCeEEEEEeCHHHHHH-HHHHh---cCceEEEEEE
Confidence 999885 4453 445666666653 3 46888888765432221 22222 6899988754
No 226
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.89 E-value=1e-08 Score=95.05 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=78.7
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
..+...++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|+++.... ..+++++.+|+.+. +. .....+
T Consensus 34 ~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~~--~~~~~~ 110 (196)
T PRK07402 34 SQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-LA--QLAPAP 110 (196)
T ss_pred HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-Hh--hCCCCC
Confidence 344446778999999999999999988777889999999999999999876432 25689999998641 11 112235
Q ss_pred eEEEEc------cccccceeeecceEEecCCeEEEee-CHHH---HHHHHHhC---CCcEEEE
Q 009871 148 DIVTME------RLTGKDQKISENFYVRGDGTRAFYF-SNDF---LTSLFKEN---GFDVEEL 197 (523)
Q Consensus 148 D~V~~~------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~---l~~ll~~~---Gf~~~~~ 197 (523)
|.++.. .++....+ .++++|.++... +.+. +.+.+++. |++++.+
T Consensus 111 d~v~~~~~~~~~~~l~~~~~-----~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 111 DRVCIEGGRPIKEILQAVWQ-----YLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred CEEEEECCcCHHHHHHHHHH-----hcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 666551 11112222 577888876543 3333 44555443 4444443
No 227
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=1.1e-08 Score=97.31 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-c
Q 009871 334 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-N 410 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-~ 410 (523)
.+.++|||+|||+|..+..+++. ...+|+++|+++++++.|++|++.+++. .++.+...+..+. +..+... +
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~---~~i~~~~gda~~~--L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD---HKINFIQSDALSA--LDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEccHHHH--HHHHHhCCC
Confidence 36789999999999655555543 3469999999999999999999999886 5677666555432 2111111 1
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
.++||+|+.. -....+..++..+.++| +|||.+++-.
T Consensus 142 ~~~fD~VfiD---a~k~~y~~~~~~~~~ll---------~~GG~ii~dn 178 (234)
T PLN02781 142 KPEFDFAFVD---ADKPNYVHFHEQLLKLV---------KVGGIIAFDN 178 (234)
T ss_pred CCCCCEEEEC---CCHHHHHHHHHHHHHhc---------CCCeEEEEEc
Confidence 3589999974 23456778888888999 6799887644
No 228
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.89 E-value=8.7e-09 Score=92.40 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=78.3
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
.-.-.+|.|||||+|..+.+++.+. .+.|+++|-|++||+.|+... ..+++...|..+- .+.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w--------~p~ 90 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW--------KPE 90 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc--------CCC
Confidence 3456799999999998788888884 568999999999999986542 2233333322221 124
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
..+|+|+++-++.+-.++..|+..+-..| .|||++-+-.+.
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L---------~Pgg~LAVQmPd 131 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQL---------APGGVLAVQMPD 131 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhh---------CCCceEEEECCC
Confidence 58999999999999999999999999999 679987765443
No 229
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.88 E-value=3e-09 Score=96.04 Aligned_cols=116 Identities=15% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-- 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-- 152 (523)
+-.++||+|||||-.+..|.... .+++|||+|+.|++.|.++..+. ...++|+.. |.....++.||+|++
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD----~L~~Aea~~--Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD----TLYVAEAVL--FLEDLTQERFDLIVAAD 196 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH----HHHHHHHHH--HhhhccCCcccchhhhh
Confidence 35789999999999999998884 34999999999999999976432 233444432 111134678999998
Q ss_pred ---------------ccccccceeeec---------ceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871 153 ---------------ERLTGKDQKISE---------NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 153 ---------------~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
...+.+++.+.- .|.+.|..+ |-++...++.++...||+++.++..
T Consensus 197 Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R--yAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 197 VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR--YAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh--hccchHHHHHHHHhcCceEEEeecc
Confidence 122233332221 112222222 2348889999999999999887643
No 230
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.7e-08 Score=91.71 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=80.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
.|-++..+...+.+-....++.+|||||||||..+..+|.... +|+.+|..+...+.|++|+...+.. +|.+...
T Consensus 53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~----nV~v~~g 127 (209)
T COG2518 53 QTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE----NVTVRHG 127 (209)
T ss_pred ceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC----ceEEEEC
Confidence 3444444444444555667899999999999977777777644 8999999999999999999997774 3666544
Q ss_pred ecCCCCcchhhhhhc-CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 396 EWGNRDHIEAIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 396 dw~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
|-... ++ ..+||.|+..- ..+.+-+.+.+-| ++||++++...
T Consensus 128 DG~~G--------~~~~aPyD~I~Vta------aa~~vP~~Ll~QL---------~~gGrlv~PvG 170 (209)
T COG2518 128 DGSKG--------WPEEAPYDRIIVTA------AAPEVPEALLDQL---------KPGGRLVIPVG 170 (209)
T ss_pred CcccC--------CCCCCCcCEEEEee------ccCCCCHHHHHhc---------ccCCEEEEEEc
Confidence 43221 22 36899999762 2333334455556 67999888665
No 231
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.88 E-value=9.7e-08 Score=87.90 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=87.4
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
-+.+.......+.++.+|||+|||+|+++..+++.. ..+|+++|+++.+ .. ..+.+...|..+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----~~i~~~~~d~~~ 83 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----ENVDFIRGDFTD 83 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----CCceEEEeeCCC
Confidence 344555555666789999999999999888887764 3489999999854 11 234555556554
Q ss_pred CCcchhhh-hhcCCCccEEEEccccC-----CCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh
Q 009871 400 RDHIEAIK-EENNEGFEVILGTDVSY-----IPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 467 (523)
Q Consensus 400 ~~~~~~~~-~~~~~~fD~Ii~~d~~y-----~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~ 467 (523)
......+. ..+..+||+|++.-..+ ... ....+++.+.++| +|||.+++... ......
T Consensus 84 ~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lvi~~~-~~~~~~ 153 (188)
T TIGR00438 84 EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVL---------KPKGNFVVKVF-QGEEID 153 (188)
T ss_pred hhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHc---------cCCCEEEEEEc-cCccHH
Confidence 32222221 13456899999853221 111 1367888899999 67999988542 234445
Q ss_pred HHHHHHHHcCCEEEEEcC
Q 009871 468 SMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 468 ~~~~~~~~~gf~~~~~~~ 485 (523)
.++..+++. |....+..
T Consensus 154 ~~l~~l~~~-~~~~~~~~ 170 (188)
T TIGR00438 154 EYLNELRKL-FEKVKVTK 170 (188)
T ss_pred HHHHHHHhh-hceEEEeC
Confidence 677776664 65444433
No 232
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.87 E-value=9e-08 Score=99.87 Aligned_cols=145 Identities=12% Similarity=0.017 Sum_probs=94.3
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 398 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~ 398 (523)
.+..|.+.+.......++.+|||+|||+|.++..++.. +.+|+++|+++.+++.|++|+..|++. ++.+...|+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~----nv~~~~~d~~ 350 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA----NVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC----ceEEEeCCHH
Confidence 34444555544444446689999999999888887765 468999999999999999999998863 5666655543
Q ss_pred CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC
Q 009871 399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf 478 (523)
+. +..+ .....+||+|+... -+. .....+++.+.+ + ++++.+|++..+. +...-+..+.+.||
T Consensus 351 ~~--l~~~-~~~~~~~D~vi~dP-Pr~-G~~~~~l~~l~~-l---------~~~~ivyvsc~p~--tlard~~~l~~~gy 413 (431)
T TIGR00479 351 TV--LPKQ-PWAGQIPDVLLLDP-PRK-GCAAEVLRTIIE-L---------KPERIVYVSCNPA--TLARDLEFLCKEGY 413 (431)
T ss_pred HH--HHHH-HhcCCCCCEEEECc-CCC-CCCHHHHHHHHh-c---------CCCEEEEEcCCHH--HHHHHHHHHHHCCe
Confidence 21 1110 12235799999743 332 335666666554 4 4577777764332 22223455667899
Q ss_pred EEEEEcC
Q 009871 479 RLVDKWP 485 (523)
Q Consensus 479 ~~~~~~~ 485 (523)
++..+..
T Consensus 414 ~~~~~~~ 420 (431)
T TIGR00479 414 GITWVQP 420 (431)
T ss_pred eEEEEEE
Confidence 9887754
No 233
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.86 E-value=4.6e-08 Score=97.54 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=82.3
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|++.|++. ++.+...|..+. .......|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~----~v~~~~~D~~~~------~~~~~~~~ 241 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLT----NVQFQALDSTQF------ATAQGEVP 241 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEcCHHHH------HHhcCCCC
Confidence 56899999999999988888865 68999999999999999999998863 466655444321 11123479
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
|+|+.... + ......+++.+.. + .|+..+|++..+..... ++ ..+ .||++.++-.
T Consensus 242 D~Vv~dPP-r-~G~~~~~~~~l~~-~---------~~~~ivyvsc~p~t~~r-d~-~~l--~~y~~~~~~~ 296 (315)
T PRK03522 242 DLVLVNPP-R-RGIGKELCDYLSQ-M---------APRFILYSSCNAQTMAK-DL-AHL--PGYRIERVQL 296 (315)
T ss_pred eEEEECCC-C-CCccHHHHHHHHH-c---------CCCeEEEEECCcccchh-HH-hhc--cCcEEEEEEE
Confidence 99998644 2 1223344444433 2 35777777665533222 22 222 5899888754
No 234
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.85 E-value=3.2e-08 Score=80.61 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=78.6
Q ss_pred eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871 338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 417 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I 417 (523)
+|||+|||+|.++..++.....+++++|.++.++..++++...+.. ..+.+...++.+... ....+||+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA----DNVEVLKGDAEELPP------EADESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc----cceEEEEcChhhhcc------ccCCceEEE
Confidence 5899999999888777775567999999999999998864443322 345666555554321 124689999
Q ss_pred EEccccCC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 418 LGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 418 i~~d~~y~-~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
+++.+++. ......+++.+.+++ +++|.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l---------~~~g~~~~~ 103 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLL---------KPGGVLVLT 103 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHc---------CCCCEEEEE
Confidence 99999888 888999999999999 679998876
No 235
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=8.5e-08 Score=94.42 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEee-ecCCCCcchhhhhhcC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRL-EWGNRDHIEAIKEENN 411 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l-dw~~~~~~~~~~~~~~ 411 (523)
.+.+|||||||+|++..+++++ ...++++||+++.+++.|++|++.| ++. .++.+..- +-.+ ....+ ....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~---~~I~~~~~~~~~~--i~~~i-~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN---GAIRLRLQKDSKA--IFKGI-IHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc---CcEEEEEccchhh--hhhcc-cccC
Confidence 4579999999999887777765 4568999999999999999999999 665 45555321 1110 01000 0124
Q ss_pred CCccEEEEccccCCCC
Q 009871 412 EGFEVILGTDVSYIPE 427 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~ 427 (523)
+.||+|+++..+|...
T Consensus 188 ~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 188 ERFDATLCNPPFHASA 203 (321)
T ss_pred CceEEEEeCCCCcCcc
Confidence 5899999998887644
No 236
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.84 E-value=4.8e-09 Score=88.55 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=62.1
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|+.+.... ..+++++++|+.+. ...+++++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDL--PEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHH--HHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhc--hhhccCceeEEEEE
Confidence 4589999999999999999997 688999999999999999977543 35799999999754 22367899999999
No 237
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.84 E-value=4.4e-08 Score=96.89 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=74.7
Q ss_pred HHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
++.+.....++.+|||+|||+|.++..+++... ..|+++|+++++++.+++|+..++.. ++.+...|..+. .
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~----nV~~i~gD~~~~--~ 144 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE----NVIFVCGDGYYG--V 144 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEeCChhhc--c
Confidence 343444455788999999999988888887643 37999999999999999999987763 345444332211 0
Q ss_pred hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
....+||+|+.+- ....+...+.+.| +|+|.+++...
T Consensus 145 -----~~~~~fD~Ii~~~------g~~~ip~~~~~~L---------kpgG~Lvv~~~ 181 (322)
T PRK13943 145 -----PEFAPYDVIFVTV------GVDEVPETWFTQL---------KEGGRVIVPIN 181 (322)
T ss_pred -----cccCCccEEEECC------chHHhHHHHHHhc---------CCCCEEEEEeC
Confidence 1124799999862 2223344566678 67998887543
No 238
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=6.7e-08 Score=101.09 Aligned_cols=144 Identities=21% Similarity=0.164 Sum_probs=94.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 396 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld 396 (523)
++.+++.++. ..++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|++.+++. .+.+...|
T Consensus 238 ~s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~~D 309 (444)
T PRK14902 238 SSMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKALD 309 (444)
T ss_pred HHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence 4455555552 3467899999999999998888763 468999999999999999999998764 36666555
Q ss_pred cCCCCcchhhhhhcCCCccEEEEccccCCCC---------------C-------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871 397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------------A-------ILPLFATAKELTASSNKSLREDQQPA 454 (523)
Q Consensus 397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------~-------~~~l~~~l~~ll~~~~~~~~~~~~g~ 454 (523)
..+.. . .+ .++||+|++....+... . ...+++.+.++| +|||.
T Consensus 310 ~~~~~--~---~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L---------kpGG~ 374 (444)
T PRK14902 310 ARKVH--E---KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL---------KKGGI 374 (444)
T ss_pred ccccc--c---hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc---------CCCCE
Confidence 54321 0 12 25899999743222110 1 135788888888 67999
Q ss_pred EEEEEeecCC--ChhHHHHHHHHc-CCEEEEEcC
Q 009871 455 FILCHIFRQV--DEPSMLSAATQC-GFRLVDKWP 485 (523)
Q Consensus 455 ~~l~~~~r~~--~~~~~~~~~~~~-gf~~~~~~~ 485 (523)
++.+...-.. .+..+...++++ +|++..+..
T Consensus 375 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~ 408 (444)
T PRK14902 375 LVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQH 408 (444)
T ss_pred EEEEcCCCChhhhHHHHHHHHHhCCCcEEecccc
Confidence 8865443222 222333445555 488766543
No 239
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=6.3e-08 Score=100.63 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=91.1
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
++...+.++ ...+|.+|||+|||+|+.+..++..+. .+|+++|+++.+++.+++|+..++.. +.+...|.
T Consensus 232 ~s~~~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----~~~~~~D~ 302 (427)
T PRK10901 232 AAQLAATLL----APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----ATVIVGDA 302 (427)
T ss_pred HHHHHHHHc----CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEcCc
Confidence 344445554 234788999999999999988888754 58999999999999999999987763 33433333
Q ss_pred CCCCcchhhhhhcCCCccEEEEccccCC-------C--------C-------ChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871 398 GNRDHIEAIKEENNEGFEVILGTDVSYI-------P--------E-------AILPLFATAKELTASSNKSLREDQQPAF 455 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-------~--------~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~ 455 (523)
.+. .. .+...+||.|++...... + + ....++..+.++| +|||.+
T Consensus 303 ~~~---~~--~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L---------kpGG~l 368 (427)
T PRK10901 303 RDP---AQ--WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL---------KPGGTL 368 (427)
T ss_pred ccc---hh--hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCEE
Confidence 221 00 012457999996432211 0 1 1236788888888 779998
Q ss_pred EEEEee--cCCChhHHHHHHHHc-CCEEEE
Q 009871 456 ILCHIF--RQVDEPSMLSAATQC-GFRLVD 482 (523)
Q Consensus 456 ~l~~~~--r~~~~~~~~~~~~~~-gf~~~~ 482 (523)
+++... +...+..+...++++ +|++..
T Consensus 369 vystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 369 LYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred EEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 876543 233334444455554 677654
No 240
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.83 E-value=4.5e-08 Score=91.44 Aligned_cols=146 Identities=11% Similarity=0.019 Sum_probs=91.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-----------CC
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FL 387 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-----------~~ 387 (523)
....|.+++.... ..++.+|||+|||.|.-+..+|.+|. .|+++|+|+.+++.+.. .+++.. ..
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeec
Confidence 3456667765532 13667999999999999999998865 69999999999997633 222210 11
Q ss_pred CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcE-EEEEEeec--
Q 009871 388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPA-FILCHIFR-- 462 (523)
Q Consensus 388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~-~~l~~~~r-- 462 (523)
.++++...|..+... ...+.||.|+-.-++.+ ++.....++.+.++| +|||. +++++...
T Consensus 94 ~~v~~~~~D~~~~~~------~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lL---------kpgG~~ll~~~~~~~~ 158 (213)
T TIGR03840 94 GNIEIFCGDFFALTA------ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALL---------PPGARQLLITLDYDQS 158 (213)
T ss_pred CceEEEEccCCCCCc------ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHc---------CCCCeEEEEEEEcCCC
Confidence 345555555443211 01247999997655443 445677899999999 77886 44544321
Q ss_pred -------CCChhHHHHHHHHcCCEEEEEcC
Q 009871 463 -------QVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 463 -------~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
..+..++.+.+. .+|++..+..
T Consensus 159 ~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 159 EMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 123344444443 3567666654
No 241
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.83 E-value=1.8e-08 Score=105.18 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=64.0
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+++...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++.... ..+++++++|+.+.-...++.+++|
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 34444567899999999999999999884 57999999999999999987533 3579999999974310112445689
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|+|++
T Consensus 369 D~Vi~ 373 (443)
T PRK13168 369 DKVLL 373 (443)
T ss_pred CEEEE
Confidence 99998
No 242
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.1e-08 Score=97.91 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=68.8
Q ss_pred cccccchhhhHHHH-hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEe
Q 009871 54 DRFFKDRHYLDKEW-GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVC 131 (523)
Q Consensus 54 ~~f~~~~~~l~~~~-~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~ 131 (523)
+-|.+++-..-.++ .+.++...+.+|||+|||.|.++..+++.+|..+|+-+|+|..+|+.|+++...+.. +..+...
T Consensus 136 GVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s 215 (300)
T COG2813 136 GVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215 (300)
T ss_pred CCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence 34444443333333 344555556699999999999999999999999999999999999999998865433 3356666
Q ss_pred eccCCccCCCCCCCceeEEEE
Q 009871 132 DLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 132 d~~~~~~~~~~~~~~fD~V~~ 152 (523)
|+.. +..+ +||.|+|
T Consensus 216 ~~~~-----~v~~-kfd~Iis 230 (300)
T COG2813 216 NLYE-----PVEG-KFDLIIS 230 (300)
T ss_pred cccc-----cccc-cccEEEe
Confidence 6654 3444 9999999
No 243
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.82 E-value=2.9e-08 Score=89.29 Aligned_cols=121 Identities=14% Similarity=0.176 Sum_probs=80.9
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
...-|||||||+|.-+..+...| ..++++|+|+.||+.|.+.--. + .....|-++. .++.++.|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-------g--dlil~DMG~G------lpfrpGtF 113 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-------G--DLILCDMGEG------LPFRPGTF 113 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-------c--CeeeeecCCC------CCCCCCcc
Confidence 46689999999994444455555 6799999999999999862111 1 1223344433 25678999
Q ss_pred cEEEEccccCC---------C--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hHHHHHHHHcCCEE
Q 009871 415 EVILGTDVSYI---------P--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRL 480 (523)
Q Consensus 415 D~Ii~~d~~y~---------~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~~~~~~~~~gf~~ 480 (523)
|-+|+-..+.+ . .-+..++.+|..+| +.++..++-+...+... +.+...+.++||.-
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l---------~rg~raV~QfYpen~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCL---------KRGARAVLQFYPENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhh---------ccCceeEEEecccchHHHHHHHHHHHhhccCC
Confidence 99886544433 1 13455688888888 56888888776655443 45677778888763
No 244
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=2.1e-08 Score=104.15 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=65.4
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
+...++.+|||+|||+|..+..+++..++.+|+|+|+|+.|++.++++....+.++.++++|+.+.. ..+++++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--QWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--hhcccCCCCEE
Confidence 3446788999999999999999999876678999999999999999987655555789999997541 11345789999
Q ss_pred EE
Q 009871 151 TM 152 (523)
Q Consensus 151 ~~ 152 (523)
++
T Consensus 318 l~ 319 (427)
T PRK10901 318 LL 319 (427)
T ss_pred EE
Confidence 97
No 245
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1e-07 Score=88.57 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=99.6
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHh-cCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~-~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
+.++.....+.+|.+|||.|+|+|.++..+|. .++ .+|+..|+.++.++.|++|+..-++. +++.....|..+..
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEEEeccccccc
Confidence 34445556788999999999999999888885 344 59999999999999999999997665 33665554444331
Q ss_pred cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 481 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~ 481 (523)
....||.|+. | ....-..+..++.+| +|||.+.+- .+--.......+.+++.||.-.
T Consensus 160 --------~~~~vDav~L-D----mp~PW~~le~~~~~L---------kpgg~~~~y-~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 160 --------DEEDVDAVFL-D----LPDPWNVLEHVSDAL---------KPGGVVVVY-SPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred --------cccccCEEEE-c----CCChHHHHHHHHHHh---------CCCcEEEEE-cCCHHHHHHHHHHHHhcCccch
Confidence 2348999987 3 456777899999999 667665443 3322233567788889999888
Q ss_pred EEcC
Q 009871 482 DKWP 485 (523)
Q Consensus 482 ~~~~ 485 (523)
+.|+
T Consensus 217 e~~E 220 (256)
T COG2519 217 EAVE 220 (256)
T ss_pred hhhe
Confidence 8776
No 246
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.79 E-value=1e-07 Score=95.67 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=81.2
Q ss_pred CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.+..+||||||+|.....+|+..+ ..++|+|+++.+++.+.+++..+++. ++.+...|.... +..+++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~----NV~~i~~DA~~l-----l~~~~~~s 192 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK----NLLIINYDARLL-----LELLPSNS 192 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC----cEEEEECCHHHh-----hhhCCCCc
Confidence 566999999999999888888753 48999999999999999999987763 466655443221 11345679
Q ss_pred ccEEEEccccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 414 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 414 fD~Ii~~d~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+|.|+..-..-++. ..+.+++.+.++| ++||.+.+..-.
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvL---------kpGG~l~l~TD~ 237 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVL---------KPGGTLELRTDS 237 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHc---------CCCcEEEEEEEC
Confidence 99999763222221 1268999999999 779999887644
No 247
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=2e-07 Score=96.67 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=86.8
Q ss_pred CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
.+|.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+...++. .+.+...|..+.. ....
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~----~v~~~~~Da~~l~------~~~~ 305 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS----SIEIKIADAERLT------EYVQ 305 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEECchhhhh------hhhh
Confidence 478899999999999988888763 468999999999999999999987663 3555555543221 1124
Q ss_pred CCccEEEEccccCCCC----------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hH
Q 009871 412 EGFEVILGTDVSYIPE----------------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PS 468 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~----------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~ 468 (523)
++||.|+..-...... ....++..+.++| +|||.++.+...-...+ +.
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L---------kpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL---------EKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCEEEEEECCCChhhCHH
Confidence 5899999732221110 1245577777888 67999887776643333 33
Q ss_pred HHHH-HHH-cCCEEEE
Q 009871 469 MLSA-ATQ-CGFRLVD 482 (523)
Q Consensus 469 ~~~~-~~~-~gf~~~~ 482 (523)
+++. +++ -+|++..
T Consensus 377 vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 377 VVKRFVYEQKDAEVID 392 (431)
T ss_pred HHHHHHHhCCCcEEec
Confidence 4443 333 3676544
No 248
>PLN02672 methionine S-methyltransferase
Probab=98.78 E-value=1.9e-08 Score=112.61 Aligned_cols=72 Identities=26% Similarity=0.403 Sum_probs=60.6
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-----------------CCcEEEEEeeccCCcc
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----------------ETRVSTFVCDLISDDL 138 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-----------------~~~v~~~~~d~~~~~~ 138 (523)
+.+|||+|||+|.++..+++.+++.+|+|+|+|+.|++.|++|...+ ..+++++++|+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh--
Confidence 46899999999999999999988889999999999999999987532 13699999999753
Q ss_pred CCCCCC--CceeEEEE
Q 009871 139 SRQISP--SSIDIVTM 152 (523)
Q Consensus 139 ~~~~~~--~~fD~V~~ 152 (523)
+.+ ..||+|++
T Consensus 197 ---~~~~~~~fDlIVS 209 (1082)
T PLN02672 197 ---CRDNNIELDRIVG 209 (1082)
T ss_pred ---ccccCCceEEEEE
Confidence 222 36999999
No 249
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.78 E-value=6.7e-08 Score=86.47 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC-
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN- 411 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~- 411 (523)
...|.+||||-||+|.+++.++++|+.+|+++|.|..++..+++|++.-+... .+.+...|- ...+.....
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~---~~~~~~~da-----~~~L~~~~~~ 112 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG---EARVLRNDA-----LRALKQLGTR 112 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc---ceEEEeecH-----HHHHHhcCCC
Confidence 35899999999999999999999999999999999999999999998866542 233322221 111112222
Q ss_pred CCccEEEEccccCCCCChHHHHHHHH----HHhhccCCCCCCCCCcEEEEEEee
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAK----ELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~----~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
.+||+|+. |..|.....+..+..+. .+| +|++.+++-+..
T Consensus 113 ~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L---------~~~~~iv~E~~~ 156 (187)
T COG0742 113 EPFDLVFL-DPPYAKGLLDKELALLLLEENGWL---------KPGALIVVEHDK 156 (187)
T ss_pred CcccEEEe-CCCCccchhhHHHHHHHHHhcCCc---------CCCcEEEEEeCC
Confidence 24999998 88898776654444444 456 567777776544
No 250
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.77 E-value=1.7e-07 Score=90.91 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
.+|.+|||+|||+|+.+..+++.. ...|+++|+++.+++.+++|++.++.. .+.+...|.... ....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~----~v~~~~~D~~~~-------~~~~ 138 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL----NVAVTNFDGRVF-------GAAV 138 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC----cEEEecCCHHHh-------hhhc
Confidence 478899999999999998887763 348999999999999999999998763 355544443211 1113
Q ss_pred CCccEEEEccccCCC---------------C-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hH
Q 009871 412 EGFEVILGTDVSYIP---------------E-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PS 468 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~---------------~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~ 468 (523)
+.||+|+........ + ....+++.+.++| +|||.++.+...-...+ +.
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l---------kpgG~lvYstcs~~~~Ene~ 209 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDAL---------KPGGVLVYSTCSLEPEENEA 209 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCEEEEEeCCCChHHHHH
Confidence 469999964222211 1 1234777777788 67998887765544333 34
Q ss_pred HHHHH-HHc-CCEE
Q 009871 469 MLSAA-TQC-GFRL 480 (523)
Q Consensus 469 ~~~~~-~~~-gf~~ 480 (523)
..+.+ +++ ++.+
T Consensus 210 vv~~~l~~~~~~~~ 223 (264)
T TIGR00446 210 VVDYLLEKRPDVVE 223 (264)
T ss_pred HHHHHHHhCCCcEE
Confidence 45444 333 4543
No 251
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.77 E-value=1.2e-08 Score=103.33 Aligned_cols=120 Identities=10% Similarity=0.126 Sum_probs=76.0
Q ss_pred CeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 337 KKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
++|+|..+|.|+++.++..... -+|+-++. +..+... ..-|+ --...||.+.- +.-+..|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vI----ydRGL-------IG~yhDWCE~f------sTYPRTY 428 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVI----YDRGL-------IGVYHDWCEAF------STYPRTY 428 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhh----hhccc-------chhccchhhcc------CCCCcch
Confidence 5899999999988777766531 24444432 3333332 22122 22356887652 2236799
Q ss_pred cEEEEccccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871 415 EVILGTDVSYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 415 D~Ii~~d~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
|+|-++.++-. .-.+..++-.+.++| .|+|.+++-... .-...+...+....|++.....
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRIL---------RP~G~~iiRD~~--~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRIL---------RPGGWVIIRDTV--DVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhc---------CCCceEEEeccH--HHHHHHHHHHHhCcceEEEEec
Confidence 99999866532 457889999999999 789999984322 1123455566667777765544
No 252
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=1.5e-07 Score=98.07 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=91.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 396 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld 396 (523)
++.+++..+ ...+|.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++.. .+.+...|
T Consensus 240 ~s~l~~~~l----~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~~D 311 (434)
T PRK14901 240 SAQLVAPLL----DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILAAD 311 (434)
T ss_pred HHHHHHHHh----CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence 344455544 23468899999999999998888763 358999999999999999999998774 35555444
Q ss_pred cCCCCcchhhhhhcCCCccEEEEcc------ccCC-CC--------C-------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871 397 WGNRDHIEAIKEENNEGFEVILGTD------VSYI-PE--------A-------ILPLFATAKELTASSNKSLREDQQPA 454 (523)
Q Consensus 397 w~~~~~~~~~~~~~~~~fD~Ii~~d------~~y~-~~--------~-------~~~l~~~l~~ll~~~~~~~~~~~~g~ 454 (523)
-.+.. .......++||.|+... ++.. ++ . ...++..+.++| +|||.
T Consensus 312 ~~~~~---~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l---------kpgG~ 379 (434)
T PRK14901 312 SRNLL---ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL---------KPGGT 379 (434)
T ss_pred hhhcc---cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCE
Confidence 32211 00001245899999632 1111 11 1 356777888888 67998
Q ss_pred EEEEEeec--CCChhHHHHHHHHc-CCEEE
Q 009871 455 FILCHIFR--QVDEPSMLSAATQC-GFRLV 481 (523)
Q Consensus 455 ~~l~~~~r--~~~~~~~~~~~~~~-gf~~~ 481 (523)
++.+...- ...+..+...++++ +|++.
T Consensus 380 lvystcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 380 LVYATCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence 87665332 22233455556665 57654
No 253
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.77 E-value=8.2e-08 Score=93.78 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC----CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 398 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~ 398 (523)
+++.+..... ..+.+|||+|||+|.++..++... ...|+++|+|+.|++.|+++. ..+.+...|..
T Consensus 74 i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~ 143 (272)
T PRK11088 74 VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSH 143 (272)
T ss_pred HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecc
Confidence 4444543322 245689999999998887777653 237999999999999987652 12334433332
Q ss_pred CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+. ++.+++||+|++. +.+ ..++.+.++| +|||.+++....
T Consensus 144 ~l-------p~~~~sfD~I~~~---~~~----~~~~e~~rvL---------kpgG~li~~~p~ 183 (272)
T PRK11088 144 RL-------PFADQSLDAIIRI---YAP----CKAEELARVV---------KPGGIVITVTPG 183 (272)
T ss_pred cC-------CCcCCceeEEEEe---cCC----CCHHHHHhhc---------cCCCEEEEEeCC
Confidence 21 2345789999986 333 3467888999 779999887543
No 254
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.75 E-value=2.4e-08 Score=92.65 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
...+.+...+.+|.+|||||||||..+.+++.. +. .+|+++|.++.+++.|++|+...+.. ++.+...|-...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~----nv~~~~gdg~~g- 135 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID----NVEVVVGDGSEG- 135 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH----SEEEEES-GGGT-
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC----ceeEEEcchhhc-
Confidence 333444445778999999999999888888876 33 37999999999999999999987663 566655442211
Q ss_pred cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
. -...+||.|+..-... .+-..+.+.| ++||++++...
T Consensus 136 -~-----~~~apfD~I~v~~a~~------~ip~~l~~qL---------~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 -W-----PEEAPFDRIIVTAAVP------EIPEALLEQL---------KPGGRLVAPIG 173 (209)
T ss_dssp -T-----GGG-SEEEEEESSBBS------S--HHHHHTE---------EEEEEEEEEES
T ss_pred -c-----ccCCCcCEEEEeeccc------hHHHHHHHhc---------CCCcEEEEEEc
Confidence 0 0135899999874332 2234455667 56999888665
No 255
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=3.2e-07 Score=95.91 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=91.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871 315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 392 (523)
Q Consensus 315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~ 392 (523)
.+++.+..++..+.. ..+|.+|||+|||+|+.+..++.. ...+|+++|+++.+++.+++|+..+++. .+.+
T Consensus 233 ~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~----~v~~ 305 (445)
T PRK14904 233 SVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT----IIET 305 (445)
T ss_pred EEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----eEEE
Confidence 456544444433332 347889999999999888877764 2458999999999999999999987763 4555
Q ss_pred EeeecCCCCcchhhhhhcCCCccEEEEccccC--------------CC--C-------ChHHHHHHHHHHhhccCCCCCC
Q 009871 393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--------------IP--E-------AILPLFATAKELTASSNKSLRE 449 (523)
Q Consensus 393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y--------------~~--~-------~~~~l~~~l~~ll~~~~~~~~~ 449 (523)
...|..+. .+..+||+|+. |+.+ .. + ....++..+.++|
T Consensus 306 ~~~Da~~~--------~~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l--------- 367 (445)
T PRK14904 306 IEGDARSF--------SPEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL--------- 367 (445)
T ss_pred EeCccccc--------ccCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 55444321 12357999995 2211 10 1 1235788888888
Q ss_pred CCCcEEEEEEeecCCCh-hHHH-HHHHHc-CCEEEE
Q 009871 450 DQQPAFILCHIFRQVDE-PSML-SAATQC-GFRLVD 482 (523)
Q Consensus 450 ~~~g~~~l~~~~r~~~~-~~~~-~~~~~~-gf~~~~ 482 (523)
+|||.++.+...-...+ +... ..++++ +|.+..
T Consensus 368 kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 368 KPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred CCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEec
Confidence 67999988765533222 2333 334444 566543
No 256
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.73 E-value=1.8e-07 Score=97.33 Aligned_cols=142 Identities=18% Similarity=0.088 Sum_probs=89.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 396 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld 396 (523)
.++..++.++. ..+|.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|++.++.. ..+.....|
T Consensus 225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d 297 (426)
T TIGR00563 225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGD 297 (426)
T ss_pred HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeccc
Confidence 35556666663 3467899999999999998888763 468999999999999999999997764 122223222
Q ss_pred cCCCCcchhhhhhcCCCccEEEEc------cccCCCCC----------------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871 397 WGNRDHIEAIKEENNEGFEVILGT------DVSYIPEA----------------ILPLFATAKELTASSNKSLREDQQPA 454 (523)
Q Consensus 397 w~~~~~~~~~~~~~~~~fD~Ii~~------d~~y~~~~----------------~~~l~~~l~~ll~~~~~~~~~~~~g~ 454 (523)
...... .....+||.|+.. .++..... ...++..+.++| +|||.
T Consensus 298 ~~~~~~-----~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L---------kpgG~ 363 (426)
T TIGR00563 298 GRGPSQ-----WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL---------KTGGT 363 (426)
T ss_pred cccccc-----cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc---------CCCcE
Confidence 211100 0124579999952 12221111 356788888888 67999
Q ss_pred EEEEEeecC--CChhHHHHHHHHc-CCEE
Q 009871 455 FILCHIFRQ--VDEPSMLSAATQC-GFRL 480 (523)
Q Consensus 455 ~~l~~~~r~--~~~~~~~~~~~~~-gf~~ 480 (523)
++.+...=. ..+..+...++++ +|.+
T Consensus 364 lvystcs~~~~Ene~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 364 LVYATCSVLPEENSEQIKAFLQEHPDFPF 392 (426)
T ss_pred EEEEeCCCChhhCHHHHHHHHHhCCCCee
Confidence 987655432 2233333444454 4654
No 257
>PHA03412 putative methyltransferase; Provisional
Probab=98.73 E-value=7.5e-08 Score=89.54 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=62.6
Q ss_pred CCCeEEEECCCccHHHHHHHhc----CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 335 AGKKVLELGCGCGGICSMVAAG----SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
.+.+|||+|||+|.++..++.. ...+|+++|+++.+++.|++|+.. +.+...|.... .+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~~D~~~~-------~~- 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWINADALTT-------EF- 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEEcchhcc-------cc-
Confidence 4679999999999888887764 235899999999999999988532 22332222211 11
Q ss_pred CCCccEEEEccccCCC------------CChHHHHHHHHHHh
Q 009871 411 NEGFEVILGTDVSYIP------------EAILPLFATAKELT 440 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~------------~~~~~l~~~l~~ll 440 (523)
..+||+||++...+.. ..+..++..+.+++
T Consensus 112 ~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll 153 (241)
T PHA03412 112 DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIA 153 (241)
T ss_pred cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHc
Confidence 3589999999776631 12556888888866
No 258
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.73 E-value=3.8e-07 Score=92.53 Aligned_cols=143 Identities=14% Similarity=0.057 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
..+..|.+++...... .+.+||||+||+|.++..++.. +.+|+++|.++.+++.+++|+..|++. ++.+...|.
T Consensus 190 ~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~----~v~~~~~d~ 263 (362)
T PRK05031 190 AVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID----NVQIIRMSA 263 (362)
T ss_pred HHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEECCH
Confidence 3445555555543321 2357999999999888855554 679999999999999999999999874 466665554
Q ss_pred CCCCcchhhhhh-----------cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh
Q 009871 398 GNRDHIEAIKEE-----------NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE 466 (523)
Q Consensus 398 ~~~~~~~~~~~~-----------~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~ 466 (523)
.+. +..+... ...+||+|+. |.-+ ....+.+++.+ . ++++.+|++..+....
T Consensus 264 ~~~--l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l---~---------~~~~ivyvSC~p~tla- 326 (362)
T PRK05031 264 EEF--TQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLV---Q---------AYERILYISCNPETLC- 326 (362)
T ss_pred HHH--HHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHH---H---------ccCCEEEEEeCHHHHH-
Confidence 321 1111000 0125899998 5555 34445555444 3 2367888876552211
Q ss_pred hHHHHHHHHcCCEEEEEcC
Q 009871 467 PSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 467 ~~~~~~~~~~gf~~~~~~~ 485 (523)
.++.. +.+ ||++.++..
T Consensus 327 rDl~~-L~~-gY~l~~v~~ 343 (362)
T PRK05031 327 ENLET-LSQ-THKVERFAL 343 (362)
T ss_pred HHHHH-HcC-CcEEEEEEE
Confidence 12222 323 899988855
No 259
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.73 E-value=3.5e-08 Score=90.80 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCce
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSI 147 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~f 147 (523)
..++.+|||+|||+|.++..+++++ +..+|+|+|+|+.+ . ..++.++++|+.+.+. ...+++++|
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~-----~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P-----IENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c-----CCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 3578899999999999999998885 56789999999965 1 1457889999875421 001356789
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|+|++
T Consensus 100 D~V~~ 104 (188)
T TIGR00438 100 DVVMS 104 (188)
T ss_pred cEEEc
Confidence 99998
No 260
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.1e-07 Score=83.00 Aligned_cols=117 Identities=17% Similarity=0.340 Sum_probs=84.6
Q ss_pred CCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.....+||||||+|..+..|++. .|++.+.++|++|.+++..++.+..+..+++.++.|+..- +..++.|+++.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-----l~~~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-----LRNESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-----hccCCccEEEE
Confidence 34778999999999999999988 7889999999999999998887766667788899988753 45589999988
Q ss_pred ------------------cccc--ccceeeec------ceEEecCCeEEEee----CHHHHHHHHHhCCCcEE
Q 009871 153 ------------------ERLT--GKDQKISE------NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVE 195 (523)
Q Consensus 153 ------------------~~~~--~~~~~~~~------~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~ 195 (523)
..+. ..+..+.+ ...+.++|.+.... .++++.+.++..||...
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 0010 01111111 11456677665432 57888889999988753
No 261
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.71 E-value=5.5e-08 Score=91.39 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=60.9
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+.+...++.+|||+|||+|..+..+++.. .+|+++|+++.|++.|+++.... ..++++.++|..+. ..+.++|
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~f 145 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----WPAYAPF 145 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----CCcCCCc
Confidence 34555678899999999999998887774 36999999999999999876432 34689999998643 1224789
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|+|++
T Consensus 146 D~I~~ 150 (212)
T PRK00312 146 DRILV 150 (212)
T ss_pred CEEEE
Confidence 99987
No 262
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=3.4e-07 Score=89.65 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=85.0
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCC-CCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
..++||+||||+|.++..+++. +..+|+++|+|+.+++.+++++...... ....++++...|-.. -+ ....+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~-----~l-~~~~~ 149 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK-----FV-AETEN 149 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH-----HH-hhCCC
Confidence 4579999999999888888876 5679999999999999999987642211 123456655433221 11 11356
Q ss_pred CccEEEEcccc--CCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEEEEc
Q 009871 413 GFEVILGTDVS--YIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 484 (523)
Q Consensus 413 ~fD~Ii~~d~~--y~~~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~~~~ 484 (523)
+||+|++. +. +.+. ....+++.+++.| +|+|.+++-........ ..+.+.+++. |.....+
T Consensus 150 ~yDvIi~D-~~dp~~~~~~l~t~ef~~~~~~~L---------~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~ 218 (283)
T PRK00811 150 SFDVIIVD-STDPVGPAEGLFTKEFYENCKRAL---------KEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPY 218 (283)
T ss_pred cccEEEEC-CCCCCCchhhhhHHHHHHHHHHhc---------CCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEE
Confidence 89999973 21 1111 1267788999999 67998877433222222 2344555555 5544544
Q ss_pred CC
Q 009871 485 PS 486 (523)
Q Consensus 485 ~~ 486 (523)
..
T Consensus 219 ~~ 220 (283)
T PRK00811 219 QA 220 (283)
T ss_pred Ee
Confidence 43
No 263
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.70 E-value=1.7e-07 Score=84.65 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=61.5
Q ss_pred HHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871 326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 405 (523)
Q Consensus 326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~ 405 (523)
.+.+.....++.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++|+..+ .++.+...|..+..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~------~~v~ii~~D~~~~~---- 72 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA------DNLTVIHGDALKFD---- 72 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC------CCEEEEECchhcCC----
Confidence 3334344557789999999999999998888 568999999999999999987531 34555555544321
Q ss_pred hhhhcCCCccEEEEccccCCC
Q 009871 406 IKEENNEGFEVILGTDVSYIP 426 (523)
Q Consensus 406 ~~~~~~~~fD~Ii~~d~~y~~ 426 (523)
+....||+|+++ +.|+.
T Consensus 73 ---~~~~~~d~vi~n-~Py~~ 89 (169)
T smart00650 73 ---LPKLQPYKVVGN-LPYNI 89 (169)
T ss_pred ---ccccCCCEEEEC-CCccc
Confidence 223369999985 55653
No 264
>PRK04457 spermidine synthase; Provisional
Probab=98.69 E-value=5.2e-08 Score=94.22 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=62.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
+++.+|||||||+|.++..+++..|+.+|++||+++.+++.|+++.... ..+++++.+|+.+. +. -.+++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~--~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IA--VHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HH--hCCCCCCEEE
Confidence 4677899999999999999999999999999999999999999976432 36899999998642 11 1235899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 142 ~ 142 (262)
T PRK04457 142 V 142 (262)
T ss_pred E
Confidence 8
No 265
>PRK01581 speE spermidine synthase; Validated
Probab=98.69 E-value=6e-07 Score=88.89 Aligned_cols=147 Identities=16% Similarity=0.064 Sum_probs=91.5
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHH---hcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVT---ANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~---~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
..++||+||||+|+....+++.. ..+|+++|+|+++++.|+.... .|.......++++...|-.+ -+ ...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~-----fL-~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE-----FL-SSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH-----HH-Hhc
Confidence 45699999999997766666653 4699999999999999996311 12211123566655433221 11 113
Q ss_pred CCCccEEEEccccCCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEE
Q 009871 411 NEGFEVILGTDVSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRL 480 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~ 480 (523)
.++||+|+.. +. ++. .-..+++.+++.| +|+|++++......... ..+...+++.|+.+
T Consensus 224 ~~~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~L---------kPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 224 SSLYDVIIID-FP-DPATELLSTLYTSELFARIATFL---------TEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CCCccEEEEc-CC-CccccchhhhhHHHHHHHHHHhc---------CCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 4689999974 32 211 1256888999999 77999876543211111 23566778899988
Q ss_pred EEEcCCCCCCCCcchhhc
Q 009871 481 VDKWPSKNSASPSESIIS 498 (523)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~ 498 (523)
.......+..+..++|..
T Consensus 293 ~~y~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 293 KSYHTIVPSFGTDWGFHI 310 (374)
T ss_pred EEEEEecCCCCCceEEEE
Confidence 776554444444444444
No 266
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.69 E-value=2.6e-07 Score=86.39 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=91.6
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
...++||||+|.|.++..++... .+|++|+.|+.|...+++ .+.. -....+|.+. +.+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg~~------vl~~~~w~~~----------~~~f 152 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KGFT------VLDIDDWQQT----------DFKF 152 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CCCe------EEehhhhhcc----------CCce
Confidence 56789999999999888887654 579999999988766543 2221 2234456543 3589
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------cCCC-------------hhH
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQVD-------------EPS 468 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------r~~~-------------~~~ 468 (523)
|+|.|-.++-.......|++.+++.| +|+|.++++-.. +++. ...
T Consensus 153 DvIscLNvLDRc~~P~~LL~~i~~~l---------~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~ 223 (265)
T PF05219_consen 153 DVISCLNVLDRCDRPLTLLRDIRRAL---------KPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSS 223 (265)
T ss_pred EEEeehhhhhccCCHHHHHHHHHHHh---------CCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999 679999876443 1111 134
Q ss_pred HHHHHHHcCCEEEEEcCC
Q 009871 469 MLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 469 ~~~~~~~~gf~~~~~~~~ 486 (523)
+++.++..||+++...+.
T Consensus 224 l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 224 LVNVFEPAGFEVERWTRL 241 (265)
T ss_pred HHHHHHhcCCEEEEEecc
Confidence 567788899999998874
No 267
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=6.9e-08 Score=95.52 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=62.9
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
+.+...++.+|||||||+|..+..+++..+ ...|+|+|+++.|++.|+++... ...++.++++|+... +...+.
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~----~~~~~~ 149 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG----VPEFAP 149 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc----ccccCC
Confidence 344446778999999999999999998754 35799999999999999987643 235689999998654 223467
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+|++
T Consensus 150 fD~Ii~ 155 (322)
T PRK13943 150 YDVIFV 155 (322)
T ss_pred ccEEEE
Confidence 999987
No 268
>PHA03412 putative methyltransferase; Provisional
Probab=98.68 E-value=4.2e-08 Score=91.21 Aligned_cols=69 Identities=10% Similarity=0.162 Sum_probs=57.9
Q ss_pred CCCeEEEECCCccccHHHHHhhC---CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.+.+|||+|||+|.++..++++. +...|+|+|+++.|++.|+++. .++.++++|+... ++ +++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~----~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTT----EF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcc----cc-cCCccEEE
Confidence 46799999999999999988763 3568999999999999999875 3578999999754 22 46899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 120 s 120 (241)
T PHA03412 120 S 120 (241)
T ss_pred E
Confidence 9
No 269
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.66 E-value=7.2e-08 Score=93.97 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=59.7
Q ss_pred hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.+...++.+|||||||+|.++..++++++ +|+|+|+++.|++.++++... .+++++++|+.+.+ +++-.+|
T Consensus 36 ~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~----~~~~~~~ 107 (272)
T PRK00274 36 DAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVD----LSELQPL 107 (272)
T ss_pred HhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCC----HHHcCcc
Confidence 344446778999999999999999999964 699999999999999886532 67999999998763 2221146
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.|++
T Consensus 108 ~vv~ 111 (272)
T PRK00274 108 KVVA 111 (272)
T ss_pred eEEE
Confidence 6655
No 270
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.66 E-value=1.5e-07 Score=93.10 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=73.7
Q ss_pred CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
++.+|||||||+|..+..++... ..+|+++|+|++||+.+++++...... .++.....|..+..... ......
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~---~~v~~i~gD~~~~~~~~--~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ---LEVHGICADFTQPLALP--PEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC---ceEEEEEEcccchhhhh--cccccC
Confidence 56799999999998888888775 468999999999999999987753311 23443344443221110 001011
Q ss_pred CccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 413 GFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 413 ~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
...+++....+++ ++....+++.+.+.| +|||.+++....
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L---------~pgG~~lig~d~ 179 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLL---------GPGGGLLIGVDL 179 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhc---------CCCCEEEEeccC
Confidence 2233444445555 445677899999999 779999886544
No 271
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.66 E-value=1e-07 Score=92.13 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=66.4
Q ss_pred ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871 55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134 (523)
Q Consensus 55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~ 134 (523)
+|..+...+. .+-+.+...++.+|||||||+|.++..++++ +.+|+|+|+++.|++.++++... ..+++++++|+.
T Consensus 10 nfl~d~~~~~-~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~ 85 (258)
T PRK14896 10 HFLIDDRVVD-RIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDAL 85 (258)
T ss_pred cccCCHHHHH-HHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccc
Confidence 3444444443 3333344456789999999999999999998 45799999999999999987643 367999999998
Q ss_pred CCccCCCCCCCceeEEEE
Q 009871 135 SDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 135 ~~~~~~~~~~~~fD~V~~ 152 (523)
+. +++ .||.|++
T Consensus 86 ~~----~~~--~~d~Vv~ 97 (258)
T PRK14896 86 KV----DLP--EFNKVVS 97 (258)
T ss_pred cC----Cch--hceEEEE
Confidence 76 332 4798877
No 272
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.66 E-value=2.8e-07 Score=85.21 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=83.1
Q ss_pred CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe-eecCCCCcchhhhhhcC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR-LEWGNRDHIEAIKEENN 411 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-ldw~~~~~~~~~~~~~~ 411 (523)
..++|||||++.|.-++.+|... ..++|.+|.+++..+.|++|++..++. .++.+.. +|+. +.+.....
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~~gdal-----~~l~~~~~ 130 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLLGGDAL-----DVLSRLLD 130 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEecCcHH-----HHHHhccC
Confidence 67899999999995555555543 358999999999999999999999886 4455544 3333 23333346
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 462 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r 462 (523)
++||+|+.- ......+..+..+.++| +|||.+++-...+
T Consensus 131 ~~fDliFID---adK~~yp~~le~~~~lL---------r~GGliv~DNvl~ 169 (219)
T COG4122 131 GSFDLVFID---ADKADYPEYLERALPLL---------RPGGLIVADNVLF 169 (219)
T ss_pred CCccEEEEe---CChhhCHHHHHHHHHHh---------CCCcEEEEeeccc
Confidence 899999986 67888999999999999 6799888755544
No 273
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.66 E-value=3.4e-07 Score=85.88 Aligned_cols=145 Identities=11% Similarity=0.027 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-----------CCC
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLA 388 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-----------~~~ 388 (523)
...|.+++... ...++.+|||+|||.|.-+..+|.+|. .|+++|+|+.+++.+.. .+++.. ...
T Consensus 23 ~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 23 NPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccC
Confidence 34566666532 123567999999999988888888865 69999999999997642 232211 113
Q ss_pred ceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE-EEEee--c-
Q 009871 389 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI-LCHIF--R- 462 (523)
Q Consensus 389 ~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~-l~~~~--r- 462 (523)
+|++...|..+.. ......||+|+-.-++.+ ++.....++.+.++| +|||.++ +++.. .
T Consensus 98 ~v~~~~~D~~~l~------~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL---------~pgG~~~l~~~~~~~~~ 162 (218)
T PRK13255 98 EITIYCGDFFALT------AADLADVDAVYDRAALIALPEEMRERYVQQLAALL---------PAGCRGLLVTLDYPQEE 162 (218)
T ss_pred ceEEEECcccCCC------cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHc---------CCCCeEEEEEEEeCCcc
Confidence 4444443333221 011247999997665443 456788899999999 6788644 33322 1
Q ss_pred ------CCChhHHHHHHHHcCCEEEEEcC
Q 009871 463 ------QVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 463 ------~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
..+.+++.+.+. -+|++..+..
T Consensus 163 ~~gPp~~~~~~el~~~~~-~~~~i~~~~~ 190 (218)
T PRK13255 163 LAGPPFSVSDEEVEALYA-GCFEIELLER 190 (218)
T ss_pred CCCCCCCCCHHHHHHHhc-CCceEEEeee
Confidence 123344555443 3377766654
No 274
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.64 E-value=3e-07 Score=89.79 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=101.4
Q ss_pred HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871 321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 400 (523)
Q Consensus 321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~ 400 (523)
..||+.+..-....+|..|||--||||++...+.-.| .+|+++|++..|++-++.|++.-++. ...+. ...+.
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~----~~~~~--~~~Da 255 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE----DYPVL--KVLDA 255 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC----ceeEE--Eeccc
Confidence 3567777666667789999999999998777666665 47999999999999999999987653 22221 11122
Q ss_pred CcchhhhhhcCCCccEEEEccccCCCC----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871 401 DHIEAIKEENNEGFEVILGTDVSYIPE----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 470 (523)
Q Consensus 401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~ 470 (523)
..+ ++...++|.|++ |..|... .+..+++++.+.| ++||.+.++... ...
T Consensus 256 ~~l----pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evL---------k~gG~~vf~~p~------~~~ 315 (347)
T COG1041 256 TNL----PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVL---------KPGGRIVFAAPR------DPR 315 (347)
T ss_pred ccC----CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHh---------hcCcEEEEecCC------cch
Confidence 221 244457999987 7878743 3778888999999 669988887762 245
Q ss_pred HHHHHcCCEEEEEcCC
Q 009871 471 SAATQCGFRLVDKWPS 486 (523)
Q Consensus 471 ~~~~~~gf~~~~~~~~ 486 (523)
+.+.+.||++......
T Consensus 316 ~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 316 HELEELGFKVLGRFTM 331 (347)
T ss_pred hhHhhcCceEEEEEEE
Confidence 6677889999887653
No 275
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.64 E-value=5.3e-08 Score=89.68 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=80.1
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
....+||||||.|.++..+|+.+|+..++|||++...+..|.++.. ....|+.++++|+... +..-++++++|.|+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccCCchheEEEe
Confidence 3348999999999999999999999999999999999998887664 3458999999999752 222355789999998
Q ss_pred ------------ccccccceeeecceEEecCCeEEEeeCH----HHHHHHHHh--CCCcEE
Q 009871 153 ------------ERLTGKDQKISENFYVRGDGTRAFYFSN----DFLTSLFKE--NGFDVE 195 (523)
Q Consensus 153 ------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~l~~ll~~--~Gf~~~ 195 (523)
.|+..+.---.-...++++|.+.+.... +++.+.+.+ .+|+..
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2221111000001246777776654433 345666666 356643
No 276
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.64 E-value=5.5e-08 Score=96.99 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=60.2
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .+++|+++|+.+.. ....++||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---HhcCCCCeEEEE
Confidence 35689999999999999999986 4679999999999999999875433 57999999997542 112357999988
No 277
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.64 E-value=5.8e-08 Score=88.89 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=75.2
Q ss_pred CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871 337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 416 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~ 416 (523)
+.++|+|||+| .+...++....+|++||+++.||+.|++--...- .+... ...++ +...+.. .+.+.|+
T Consensus 35 ~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y-----~~t~~---~ms~~-~~v~L~g-~e~SVDl 103 (261)
T KOG3010|consen 35 RLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY-----CHTPS---TMSSD-EMVDLLG-GEESVDL 103 (261)
T ss_pred ceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcCCCccc-----ccCCc---ccccc-ccccccC-CCcceee
Confidence 38999999999 6655555557899999999999998865211110 11100 01111 1111111 1579999
Q ss_pred EEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEE-EEEeecCCChhHHHHHHHHcCC
Q 009871 417 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFI-LCHIFRQVDEPSMLSAATQCGF 478 (523)
Q Consensus 417 Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~-l~~~~r~~~~~~~~~~~~~~gf 478 (523)
|+++.++++.. ++.+.+.+.++|+ ++||.+. -++.......+++...+.+.+.
T Consensus 104 I~~Aqa~HWFd-le~fy~~~~rvLR--------k~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 104 ITAAQAVHWFD-LERFYKEAYRVLR--------KDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred ehhhhhHHhhc-hHHHHHHHHHHcC--------CCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 99999999886 8899999999993 2354443 3333223344555555544433
No 278
>PRK01581 speE spermidine synthase; Validated
Probab=98.63 E-value=1.2e-07 Score=93.80 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=83.1
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc--------ccCCCcEEEEEeeccCCccCCCC
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--------DFTETRVSTFVCDLISDDLSRQI 142 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~--------~~~~~~v~~~~~d~~~~~~~~~~ 142 (523)
.....+.+||+||||+|..+..+++..+..+|++||++++|++.|++.. ....++++++.+|+.+. + ..
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L--~~ 222 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-L--SS 222 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-H--Hh
Confidence 3346778999999999999988888765578999999999999999731 12357899999999752 1 12
Q ss_pred CCCceeEEEEccc---cccceeee------c-ceEEecCCeEEEee-----CH---HHHHHHHHhCCCcEEEE
Q 009871 143 SPSSIDIVTMERL---TGKDQKIS------E-NFYVRGDGTRAFYF-----SN---DFLTSLFKENGFDVEEL 197 (523)
Q Consensus 143 ~~~~fD~V~~~~~---~~~~~~~~------~-~~~~~~~g~~~~~~-----~~---~~l~~ll~~~Gf~~~~~ 197 (523)
.+++||+|++.-. ......+. . .-.++++|.++..- .. ..+.+.++++||.+...
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 3568999999111 00000000 0 11577888775421 11 23577788898876543
No 279
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=1.2e-07 Score=99.09 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=62.0
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
...++.+|||+|||+|..+..+++.. .+.+|+|+|+|+.|++.++++....+ .+++++++|+... + ++++||+
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~----~-~~~~fD~ 321 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF----S-PEEQPDA 321 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----c-cCCCCCE
Confidence 33567899999999999999888764 35689999999999999999875433 4689999999765 2 4568999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 322 Vl~ 324 (445)
T PRK14904 322 ILL 324 (445)
T ss_pred EEE
Confidence 997
No 280
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=1.2e-07 Score=98.64 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=64.3
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+...++.+|||+|||+|..+..+++.. +.++|+|+|+++.|++.++++....+ .++.++++|+....-..+...++||
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 344678899999999999999999884 35789999999999999999875433 4689999999865210013357899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.|++
T Consensus 328 ~Vl~ 331 (434)
T PRK14901 328 RILL 331 (434)
T ss_pred EEEE
Confidence 9998
No 281
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.3e-08 Score=82.13 Aligned_cols=74 Identities=18% Similarity=0.379 Sum_probs=61.3
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
-++++++|+|||+|.+..... .+..-.|+|+|+.|++++.+++|+..-..++++.++|+.++ .+..+.||.++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl----e~~~g~fDtavi 120 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL----ELKGGIFDTAVI 120 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch----hccCCeEeeEEe
Confidence 478999999999999984443 33356799999999999999999866567789999999987 455689999987
No 282
>PRK03612 spermidine synthase; Provisional
Probab=98.62 E-value=8.8e-07 Score=94.15 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=86.4
Q ss_pred CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCC---CCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLK---PPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~---~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
+.++|||||||+|.++..+++... .+|+++|+|+++++.+++|...+.. .....++++...|-. +-+ ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~-----~~l-~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF-----NWL-RKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH-----HHH-HhC
Confidence 567999999999988888777654 7999999999999999986432211 112245655443321 111 112
Q ss_pred CCCccEEEEccccCCC-C-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEE
Q 009871 411 NEGFEVILGTDVSYIP-E-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLV 481 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~-~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~ 481 (523)
+++||+|++. ..... . .-.++++.+++.| +|+|.+++......... ..+.+.+++.||.+.
T Consensus 371 ~~~fDvIi~D-~~~~~~~~~~~L~t~ef~~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 371 AEKFDVIIVD-LPDPSNPALGKLYSVEFYRLLKRRL---------APDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCCEEEEe-CCCCCCcchhccchHHHHHHHHHhc---------CCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 4689999985 32211 1 1245888999999 77999887543322222 356677888999544
Q ss_pred E
Q 009871 482 D 482 (523)
Q Consensus 482 ~ 482 (523)
.
T Consensus 441 ~ 441 (521)
T PRK03612 441 P 441 (521)
T ss_pred E
Confidence 4
No 283
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=9.6e-07 Score=86.06 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=85.4
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
..++||+||||+|.++..+++.. ..+|+++|+++.+++.+++++..........++.+...|. ..-+.. ..++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~-----~~~l~~-~~~~ 145 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG-----FKFLAD-TENT 145 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch-----HHHHHh-CCCC
Confidence 34599999999998887777765 5689999999999999999875432211223455443211 111111 2468
Q ss_pred ccEEEEccc--cCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH---HHHHHHHcCCEEEEEcCC
Q 009871 414 FEVILGTDV--SYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS---MLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 414 fD~Ii~~d~--~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~---~~~~~~~~gf~~~~~~~~ 486 (523)
||+|+..-. ...... ...+++.++++| +|+|.+++........... +...+++. |.....|..
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~ 215 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKAL---------NEDGIFVAQSESPWIQLELITDLKRDVKEA-FPITEYYTA 215 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHh---------CCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 999997422 111111 467788999999 6799998864432233322 23334444 666665554
Q ss_pred CCC
Q 009871 487 KNS 489 (523)
Q Consensus 487 ~~~ 489 (523)
..|
T Consensus 216 ~vp 218 (270)
T TIGR00417 216 NIP 218 (270)
T ss_pred EcC
Confidence 333
No 284
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.62 E-value=1.2e-07 Score=92.17 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=69.8
Q ss_pred hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCC
Q 009871 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141 (523)
Q Consensus 63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (523)
+..+.-+.+...++..+||.+||.|.++..+++..+ +++|+|+|.++.|++.|+++... ..++.++++|..++.- .
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~--~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKE--V 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHH--H
Confidence 556666666656788999999999999999999975 68999999999999999987644 5689999999986421 1
Q ss_pred CCC--CceeEEEE
Q 009871 142 ISP--SSIDIVTM 152 (523)
Q Consensus 142 ~~~--~~fD~V~~ 152 (523)
.+. .+||+|++
T Consensus 84 l~~~~~~vDgIl~ 96 (296)
T PRK00050 84 LAEGLGKVDGILL 96 (296)
T ss_pred HHcCCCccCEEEE
Confidence 112 27999999
No 285
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.61 E-value=1.5e-07 Score=97.75 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=60.8
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEE--EEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS--TFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~--~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.+.++.+|||+|||+|..+..+++..++++|+|+|+|+.+++.++++.+..+..+. +..+|..... ...+.++||
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~--~~~~~~~fD 311 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS--QWAENEQFD 311 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc--ccccccccC
Confidence 444678899999999999999999987678999999999999999998754433333 3556655331 112467899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.|++
T Consensus 312 ~Vll 315 (426)
T TIGR00563 312 RILL 315 (426)
T ss_pred EEEE
Confidence 9997
No 286
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=7.4e-08 Score=89.51 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=62.5
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCc-cCCCCCCCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDD-LSRQISPSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~fD~V~ 151 (523)
.+..|||+|||+|.++..++...|++.|+|||.|+.++..|.+|++.. ..++..++.+++..- .+.+...+.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 456799999999999999999988999999999999999999987543 356777766555321 12245678999999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
|
T Consensus 228 s 228 (328)
T KOG2904|consen 228 S 228 (328)
T ss_pred c
Confidence 9
No 287
>PLN02476 O-methyltransferase
Probab=98.60 E-value=4.7e-07 Score=87.18 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--
Q 009871 334 VAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-- 409 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-- 409 (523)
.+.++|||||+|+|..++.+|.. + ..+|+.+|.+++.++.|++|++.+++. +++.+...+.. +.+..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~---~~I~li~GdA~-----e~L~~l~~ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS---HKVNVKHGLAA-----ESLKSMIQ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHH-----HHHHHHHh
Confidence 36789999999999666666653 2 347999999999999999999999886 46666543322 222222
Q ss_pred --cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 410 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 410 --~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
..++||+|+.- -....+...+..+.++| ++||.+++-...
T Consensus 189 ~~~~~~FD~VFID---a~K~~Y~~y~e~~l~lL---------~~GGvIV~DNvL 230 (278)
T PLN02476 189 NGEGSSYDFAFVD---ADKRMYQDYFELLLQLV---------RVGGVIVMDNVL 230 (278)
T ss_pred cccCCCCCEEEEC---CCHHHHHHHHHHHHHhc---------CCCcEEEEecCc
Confidence 13589999985 34677889999999999 678988764443
No 288
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.60 E-value=6.8e-08 Score=93.74 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=62.9
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+...++.+|||+|||+|..+..+++... ...|+|+|+++.+++.++++....+ .++.+.+.|+... +...++||
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~----~~~~~~fD 142 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF----GAAVPKFD 142 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh----hhhccCCC
Confidence 4446788999999999999999988753 4689999999999999999875433 5688999998754 23345699
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 143 ~Vl~ 146 (264)
T TIGR00446 143 AILL 146 (264)
T ss_pred EEEE
Confidence 9998
No 289
>PRK04148 hypothetical protein; Provisional
Probab=98.59 E-value=2.2e-07 Score=78.83 Aligned_cols=94 Identities=20% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccH-HHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGG-ICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~-l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
+++||.++....++++|||+|||+|. ++..+++.| ..|+++|+++.+++.++.+. +.+...|+.+.+
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p~ 71 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNPN 71 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhC-----------CeEEECcCCCCC
Confidence 67788776655567899999999995 676777665 58999999999988887652 245555665542
Q ss_pred cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELT 440 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll 440 (523)
. .+ -..+|+|.+. ...+.+...+.++.
T Consensus 72 ~-----~~-y~~a~liysi------rpp~el~~~~~~la 98 (134)
T PRK04148 72 L-----EI-YKNAKLIYSI------RPPRDLQPFILELA 98 (134)
T ss_pred H-----HH-HhcCCEEEEe------CCCHHHHHHHHHHH
Confidence 1 00 1355666554 44455555555554
No 290
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=1.9e-07 Score=97.62 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=62.8
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
...++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.++++....+ .+++++++|+.... ..++ ++||+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~~-~~fD~ 323 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKFA-EKFDK 323 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chhc-ccCCE
Confidence 33567899999999999999999874 56799999999999999998875433 45899999997541 1223 68999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 324 Vl~ 326 (444)
T PRK14902 324 ILV 326 (444)
T ss_pred EEE
Confidence 998
No 291
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.58 E-value=2.1e-07 Score=86.07 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=79.8
Q ss_pred CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh-hc
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-EN 410 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~-~~ 410 (523)
.+.++|||||||+|.-+..+|... ..+|+.+|.+++..+.|++|++..+.. .+|++...+..+ .+..+.. ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---~~I~~~~gda~~--~l~~l~~~~~ 118 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---DRIEVIEGDALE--VLPELANDGE 118 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---GGEEEEES-HHH--HHHHHHHTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---CcEEEEEeccHh--hHHHHHhccC
Confidence 356799999999996666666442 359999999999999999999998875 677776544332 1222211 11
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
.++||+|+.- -....+...+..+.++| ++||.+++-...
T Consensus 119 ~~~fD~VFiD---a~K~~y~~y~~~~~~ll---------~~ggvii~DN~l 157 (205)
T PF01596_consen 119 EGQFDFVFID---ADKRNYLEYFEKALPLL---------RPGGVIIADNVL 157 (205)
T ss_dssp TTSEEEEEEE---STGGGHHHHHHHHHHHE---------EEEEEEEEETTT
T ss_pred CCceeEEEEc---ccccchhhHHHHHhhhc---------cCCeEEEEcccc
Confidence 3589999985 46778888999999999 568877765443
No 292
>PRK00811 spermidine synthase; Provisional
Probab=98.58 E-value=1.3e-07 Score=92.66 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc------CCCcEEEEEeeccCCccCCCCCCCc
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
.+++.+||+||||.|..+..++++.+..+|++||+++.+++.|+++... ..++++++.+|+... + ...+++
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l--~~~~~~ 150 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-V--AETENS 150 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-H--hhCCCc
Confidence 3567899999999999999998775456899999999999999986531 357899999998753 1 123578
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+|++
T Consensus 151 yDvIi~ 156 (283)
T PRK00811 151 FDVIIV 156 (283)
T ss_pred ccEEEE
Confidence 999999
No 293
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.57 E-value=1.9e-07 Score=97.41 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=62.4
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCC-CCCCCce
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSR-QISPSSI 147 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~-~~~~~~f 147 (523)
++...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++...+ ..+++++++|+.+. ++. ++.+++|
T Consensus 287 ~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-l~~~~~~~~~~ 363 (431)
T TIGR00479 287 ALELQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-LPKQPWAGQIP 363 (431)
T ss_pred HhccCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH-HHHHHhcCCCC
Confidence 3444566899999999999999999874 46999999999999999987543 35799999998642 110 1335679
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|+|++
T Consensus 364 D~vi~ 368 (431)
T TIGR00479 364 DVLLL 368 (431)
T ss_pred CEEEE
Confidence 99998
No 294
>PRK04148 hypothetical protein; Provisional
Probab=98.57 E-value=2.1e-07 Score=78.97 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=56.2
Q ss_pred hcCCCCCeEEEECCCccc-cHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 71 FSGAGRKDVLEVGCGAGN-TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~-~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
++..++.+|||||||+|. ++..|++. +..|+|+|+++.+++.|+++. ++++++|+.+.++.. -..+|+
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~~---y~~a~l 80 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLEI---YKNAKL 80 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHHH---HhcCCE
Confidence 333456889999999996 88888877 678999999999999998863 688999998764321 356899
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|.+
T Consensus 81 iys 83 (134)
T PRK04148 81 IYS 83 (134)
T ss_pred EEE
Confidence 977
No 295
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.57 E-value=1.4e-07 Score=92.82 Aligned_cols=78 Identities=13% Similarity=-0.000 Sum_probs=58.2
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEE-eeccCCccCCCCCCCceeEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFV-CDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~-~d~~~~~~~~~~~~~~fD~V 150 (523)
...+|||||||+|.+...|+.+.++++++|+|+++.+++.|+++...+ ..++++.+ .|....-.....+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999888888877899999999999999999987654 24576653 33332100001236789999
Q ss_pred EE
Q 009871 151 TM 152 (523)
Q Consensus 151 ~~ 152 (523)
+|
T Consensus 194 vc 195 (321)
T PRK11727 194 LC 195 (321)
T ss_pred Ee
Confidence 99
No 296
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.4e-07 Score=79.13 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 331 PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
-..+.|+.++|||||+|.+....+..++..|+++|++|++++..++|++.-.+.. .-+++ +..+.. +.
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi--dlLqc---dildle-------~~ 111 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI--DLLQC---DILDLE-------LK 111 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh--heeee---eccchh-------cc
Confidence 3457999999999999977766666688899999999999999999998866542 22333 322221 22
Q ss_pred CCCccEEEEccccC
Q 009871 411 NEGFEVILGTDVSY 424 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y 424 (523)
.+.||..+.+..+-
T Consensus 112 ~g~fDtaviNppFG 125 (185)
T KOG3420|consen 112 GGIFDTAVINPPFG 125 (185)
T ss_pred CCeEeeEEecCCCC
Confidence 46899999876543
No 297
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.56 E-value=1e-06 Score=83.46 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
.++....++.+|.+|||-|+|+|.++..++.. + ..+|+..|..++..+.|++|++.+++. ..+.+..-|..+...
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---DNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC---TTEEEEES-GGCG--
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC---CCceeEecceecccc
Confidence 34444557789999999999999999888864 3 359999999999999999999999885 577887777754211
Q ss_pred chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871 403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 482 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~ 482 (523)
.. .+ ...+|.|+. |+. ..-..+..+.+.|+ ++|| .++|+.+--.......+.+++.||.-.+
T Consensus 107 ~~---~~-~~~~DavfL-Dlp----~Pw~~i~~~~~~L~--------~~gG-~i~~fsP~ieQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DE---EL-ESDFDAVFL-DLP----DPWEAIPHAKRALK--------KPGG-RICCFSPCIEQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp ST---T--TTSEEEEEE-ESS----SGGGGHHHHHHHE---------EEEE-EEEEEESSHHHHHHHHHHHHHTTEEEEE
T ss_pred cc---cc-cCcccEEEE-eCC----CHHHHHHHHHHHHh--------cCCc-eEEEECCCHHHHHHHHHHHHHCCCeeeE
Confidence 00 11 357999887 443 34445666777772 1244 4555544223334577888899998766
Q ss_pred EcC
Q 009871 483 KWP 485 (523)
Q Consensus 483 ~~~ 485 (523)
+.+
T Consensus 169 ~~E 171 (247)
T PF08704_consen 169 TVE 171 (247)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 298
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=1.1e-07 Score=98.49 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=64.0
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+...++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.+++.++++....+ .++++.++|+..+. .+.+++||
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~---~~~~~~fD 309 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT---EYVQDTFD 309 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh---hhhhccCC
Confidence 445678899999999999999999874 46789999999999999999875432 46889999987551 13457899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.|++
T Consensus 310 ~Vl~ 313 (431)
T PRK14903 310 RILV 313 (431)
T ss_pred EEEE
Confidence 9998
No 299
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=2.6e-07 Score=84.43 Aligned_cols=121 Identities=12% Similarity=0.205 Sum_probs=80.9
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCC-------------CceEE-----
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFL-------------AKLIT----- 392 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~-------------~~v~~----- 392 (523)
..+.++.+|||||-+|.++..+|+. ++..|+++|+++..++.|++|++.-.-.... ..+..
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4568889999999999999888887 6779999999999999999988643211000 00000
Q ss_pred --Eeee-----cCCCC----cchhhhhhcCCCccEEEEccccC------CCCChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871 393 --KRLE-----WGNRD----HIEAIKEENNEGFEVILGTDVSY------IPEAILPLFATAKELTASSNKSLREDQQPAF 455 (523)
Q Consensus 393 --~~ld-----w~~~~----~~~~~~~~~~~~fD~Ii~~d~~y------~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~ 455 (523)
...+ |.... +...+.......||+|+|-.+.- +.+.+..+++.+.++| .|||++
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll---------~pgGiL 205 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLL---------HPGGIL 205 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhh---------CcCcEE
Confidence 0000 00000 00111123456899999876543 3567999999999999 789999
Q ss_pred EEEEee
Q 009871 456 ILCHIF 461 (523)
Q Consensus 456 ~l~~~~ 461 (523)
++--..
T Consensus 206 vvEPQp 211 (288)
T KOG2899|consen 206 VVEPQP 211 (288)
T ss_pred EEcCCc
Confidence 985443
No 300
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.54 E-value=1.4e-07 Score=88.23 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=82.1
Q ss_pred hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEeeccCCccCCCCCCCc
Q 009871 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
.+++.......+||||||.|.++..+|+++|+..++|||+....+..|.++....+. |+.+++.|+... +..-+++++
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-l~~~~~~~s 119 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-LDYLIPDGS 119 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHhcCCCCC
Confidence 344443345689999999999999999999999999999999999998887765555 999999999753 222345669
Q ss_pred eeEEEE-------------ccccccceeeecceEEecCCeEEEeeCHHHHHHH
Q 009871 147 IDIVTM-------------ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 186 (523)
Q Consensus 147 fD~V~~-------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~l 186 (523)
.|-|+. .|+..+.-.-.-...++++|.+.+-...+++.+.
T Consensus 120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 999988 2221111000001257778877765555554444
No 301
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.53 E-value=2.9e-07 Score=85.42 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=61.6
Q ss_pred hhhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCC
Q 009871 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPS 145 (523)
Q Consensus 68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~ 145 (523)
-+++...++.+|||||||+|..+..|+.. .+...|++||+.+..++.|+++... ...++.++++|.... .-...
T Consensus 65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g----~~~~a 140 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG----WPEEA 140 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT----TGGG-
T ss_pred HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc----cccCC
Confidence 34556688999999999999999999887 5566899999999999999998753 335899999998753 12346
Q ss_pred ceeEEEE
Q 009871 146 SIDIVTM 152 (523)
Q Consensus 146 ~fD~V~~ 152 (523)
.||.|++
T Consensus 141 pfD~I~v 147 (209)
T PF01135_consen 141 PFDRIIV 147 (209)
T ss_dssp SEEEEEE
T ss_pred CcCEEEE
Confidence 7999988
No 302
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.52 E-value=1.1e-06 Score=79.95 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=96.4
Q ss_pred eEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc-chhhhhhcCCCcc
Q 009871 338 KVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH-IEAIKEENNEGFE 415 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~-~~~~~~~~~~~fD 415 (523)
+|||||||||--+..+|+..+. ...-+|.++..+..++..+...+..+....+ .+|...... ..........+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~---~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL---ALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe---EeecCCCCCccccccccCCCCcc
Confidence 6999999999989998888654 7888999998888888888777665333333 334333211 0000012356899
Q ss_pred EEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------C-----CChhH
Q 009871 416 VILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------Q-----VDEPS 468 (523)
Q Consensus 416 ~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------------~-----~~~~~ 468 (523)
.|++..+++- .+....|++.+.++| +++|.+++-.+.. . .+.+.
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L---------~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLL---------KPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhC---------CCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHH
Confidence 9999999887 457899999999999 6788887754431 1 13356
Q ss_pred HHHHHHHcCCEEEEEcC
Q 009871 469 MLSAATQCGFRLVDKWP 485 (523)
Q Consensus 469 ~~~~~~~~gf~~~~~~~ 485 (523)
+.+.+.++||+.+++..
T Consensus 176 v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 176 VEALAAAHGLELEEDID 192 (204)
T ss_pred HHHHHHHCCCccCcccc
Confidence 77788889999877765
No 303
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=6.3e-08 Score=91.42 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=86.9
Q ss_pred CcccccchhHHHHHHHHhcC---CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHH-HHHHHhcCCCC-
Q 009871 311 STGLMLWESAHLMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLL-AQNVTANLKPP- 385 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~~---~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~-~~n~~~n~~~~- 385 (523)
..|+.+|+++..|..++... .-.+.+++|||||||+|..+..+...+...|.+.|.+.+.++.- -.|+..|....
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence 45899999999999999854 33468999999999999656666666778999999999888432 22333322211
Q ss_pred ---CC-CceEEE---eeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHH-HHHHHHHhhccCCCCCCCCCcEEEE
Q 009871 386 ---FL-AKLITK---RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPL-FATAKELTASSNKSLREDQQPAFIL 457 (523)
Q Consensus 386 ---~~-~~v~~~---~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l-~~~l~~ll~~~~~~~~~~~~g~~~l 457 (523)
.. ...... ..||.-. . .....||+|+++.++|.....+.+ ......++ ++.|.+++
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~~-~------t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~---------~~D~~~~~ 232 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVFN-H------TERTHYDLILSSETIYSIDSLAVLYLLHRPCLL---------KTDGVFYV 232 (282)
T ss_pred hhhhcccceeccccccccchhh-h------ccccchhhhhhhhhhhCcchhhhhHhhhhhhcC---------Cccchhhh
Confidence 00 001111 1144110 0 001289999999999999988888 44444444 45676666
Q ss_pred EEee
Q 009871 458 CHIF 461 (523)
Q Consensus 458 ~~~~ 461 (523)
+...
T Consensus 233 aAK~ 236 (282)
T KOG2920|consen 233 AAKK 236 (282)
T ss_pred hhHh
Confidence 5433
No 304
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.51 E-value=8.3e-07 Score=84.15 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=83.4
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+...++++|||.|.|+|.++..|++. +|..+|+..|+.++.++.|+++.... ..++.+.+.|+.+..++.. .++.|
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-LESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-ccCcc
Confidence 45578999999999999999999987 78899999999999999999987543 3589999999976533211 13679
Q ss_pred eEEEEccccccceeeec-ceEE-ecCCeEEEee-CHHHH---HHHHHhCCCcEEEEE
Q 009871 148 DIVTMERLTGKDQKISE-NFYV-RGDGTRAFYF-SNDFL---TSLFKENGFDVEELG 198 (523)
Q Consensus 148 D~V~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~-~~~~l---~~ll~~~Gf~~~~~~ 198 (523)
|.|+. ++..++..+.. .-.+ +++|.++.|- +.+++ .+.|++.||..+++.
T Consensus 115 DavfL-Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 115 DAVFL-DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEE-ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cEEEE-eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEE
Confidence 99998 11122222211 0135 6677776654 55554 555677899876543
No 305
>PLN02366 spermidine synthase
Probab=98.49 E-value=3e-06 Score=83.54 Aligned_cols=132 Identities=16% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
..++||+||||.|++...+++.. ..+|+++|+++.+++.+++.+..-.......++++...|-. .-+...+.++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~-----~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV-----EFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH-----HHHhhccCCC
Confidence 46799999999998888887764 46899999999999999998754221122356666543311 1111223468
Q ss_pred ccEEEEccccCC--CC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC---hhHHHHHHHHcCCEEE
Q 009871 414 FEVILGTDVSYI--PE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---EPSMLSAATQCGFRLV 481 (523)
Q Consensus 414 fD~Ii~~d~~y~--~~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~---~~~~~~~~~~~gf~~~ 481 (523)
||+|+. |..-. +. .-..+++.++++| +|+|.+++-...-... ...+.+.+++......
T Consensus 166 yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L---------~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v 231 (308)
T PLN02366 166 YDAIIV-DSSDPVGPAQELFEKPFFESVARAL---------RPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSV 231 (308)
T ss_pred CCEEEE-cCCCCCCchhhhhHHHHHHHHHHhc---------CCCcEEEECcCCcccchHHHHHHHHHHHHHCCCce
Confidence 999997 43211 11 1346789999999 6799986532221111 2345566666643333
No 306
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=4.7e-07 Score=96.19 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--------cCCCcEEEEEeeccCCccCCCCCC
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--------FTETRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--------~~~~~v~~~~~d~~~~~~~~~~~~ 144 (523)
.+++++|||||||+|..+..++++.+..+|+++|++++|++.|+++.. ...++++++.+|..+. + ...+
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l--~~~~ 371 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-L--RKLA 371 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-H--HhCC
Confidence 356789999999999999998876333689999999999999998421 1246899999998752 1 1124
Q ss_pred CceeEEEEcccccc---ceee-ec------ceEEecCCeEEE-----eeCH---HHHHHHHHhCCC
Q 009871 145 SSIDIVTMERLTGK---DQKI-SE------NFYVRGDGTRAF-----YFSN---DFLTSLFKENGF 192 (523)
Q Consensus 145 ~~fD~V~~~~~~~~---~~~~-~~------~~~~~~~g~~~~-----~~~~---~~l~~ll~~~Gf 192 (523)
++||+|++.-.... ...+ .. .-.++++|.+.. ++.. .++.+.+++.||
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 68999999110000 0000 00 115788888765 3333 357778888999
No 307
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.49 E-value=3e-06 Score=85.68 Aligned_cols=141 Identities=13% Similarity=0.024 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
+..|.+++.+.... .+.+|||||||+|.++..++.. +.+|+++|+++.|++.+++|+..|++. ++.+...|..+
T Consensus 183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~d~~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID----NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEcCHHH
Confidence 34444444443322 2347999999999888866655 468999999999999999999999874 46666555532
Q ss_pred CCcchhhhh---h---c-----CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH
Q 009871 400 RDHIEAIKE---E---N-----NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 468 (523)
Q Consensus 400 ~~~~~~~~~---~---~-----~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~ 468 (523)
. +..... + . ...||+|+.- .- .....+.+++.+ . ++++.+|++..+..... +
T Consensus 257 ~--~~~~~~~~~~~~~~~~~~~~~~~d~v~lD-PP-R~G~~~~~l~~l---~---------~~~~ivYvsC~p~tlaR-D 319 (353)
T TIGR02143 257 F--TQAMNGVREFRRLKGIDLKSYNCSTIFVD-PP-RAGLDPDTCKLV---Q---------AYERILYISCNPETLKA-N 319 (353)
T ss_pred H--HHHHhhccccccccccccccCCCCEEEEC-CC-CCCCcHHHHHHH---H---------cCCcEEEEEcCHHHHHH-H
Confidence 1 110000 0 0 1248999984 44 334445555544 4 34778888765532221 2
Q ss_pred HHHHHHHcCCEEEEEcC
Q 009871 469 MLSAATQCGFRLVDKWP 485 (523)
Q Consensus 469 ~~~~~~~~gf~~~~~~~ 485 (523)
+-. +. .||++.++-.
T Consensus 320 l~~-L~-~~Y~l~~v~~ 334 (353)
T TIGR02143 320 LEQ-LS-ETHRVERFAL 334 (353)
T ss_pred HHH-Hh-cCcEEEEEEE
Confidence 222 22 3488887754
No 308
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.49 E-value=4e-07 Score=89.20 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=65.2
Q ss_pred cccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeec
Q 009871 56 FFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDL 133 (523)
Q Consensus 56 f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~ 133 (523)
|..+...+. .+-+.....++.+|||||||+|.++..+++.. .+|+|+|+++.|++.++++.... ..+++++++|+
T Consensus 18 FL~d~~i~~-~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLD-KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHH-HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 433444333 33333444677899999999999999999884 46999999999999999876432 36799999999
Q ss_pred cCCccCCCCCCCceeEEEE
Q 009871 134 ISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 134 ~~~~~~~~~~~~~fD~V~~ 152 (523)
...+ + ..||+|++
T Consensus 95 l~~~----~--~~~d~Vva 107 (294)
T PTZ00338 95 LKTE----F--PYFDVCVA 107 (294)
T ss_pred hhhc----c--cccCEEEe
Confidence 8653 2 35788876
No 309
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.48 E-value=5e-07 Score=87.24 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCC
Q 009871 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136 (523)
Q Consensus 67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~ 136 (523)
+-+.+...++.+|||||||+|.++..|+++++. |+|+|+++.|++.++++... ..+++++++|+...
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKV 87 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcC
Confidence 333444467789999999999999999999754 99999999999999886532 46799999999876
No 310
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.47 E-value=8.7e-07 Score=90.04 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=72.2
Q ss_pred CCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 336 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
+.+|||++||+|.+++.++.. ++.+|+++|+++.+++.+++|++.|++. .+.+...|.. .+... ...|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~----~~~v~~~Da~------~~l~~-~~~f 126 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE----NEKVFNKDAN------ALLHE-ERKF 126 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ceEEEhhhHH------HHHhh-cCCC
Confidence 468999999999999888775 5568999999999999999999999875 2333332221 11010 3579
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
|+|+. |. | ....+++...-..+ +++|.++++.
T Consensus 127 D~V~l-DP-~--Gs~~~~l~~al~~~---------~~~gilyvSA 158 (382)
T PRK04338 127 DVVDI-DP-F--GSPAPFLDSAIRSV---------KRGGLLCVTA 158 (382)
T ss_pred CEEEE-CC-C--CCcHHHHHHHHHHh---------cCCCEEEEEe
Confidence 99999 54 3 44567777755556 5688988873
No 311
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.47 E-value=2.5e-07 Score=101.77 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.+.+|||+|||+|.++..++..+ ..+|++||+|+.|++.|+++...++ .+++++++|+.+. +. .. .++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~-~~-~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LK-EA-REQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HH-Hc-CCCcCEEE
Confidence 57899999999999999999863 3469999999999999999875442 3689999998642 11 11 46899999
Q ss_pred E--ccccccceee-------------ec--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEEEeEeeeeeecccCc
Q 009871 152 M--ERLTGKDQKI-------------SE--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEELGLCCKQVENRAREL 211 (523)
Q Consensus 152 ~--~~~~~~~~~~-------------~~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~ 211 (523)
+ ..| ...... .. .-.++++|.+++.. ......+.+.++|+.+..+.......... ...
T Consensus 614 lDPP~f-~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~Dhp-~~~ 691 (702)
T PRK11783 614 IDPPTF-SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAKTLPPDFA-RNP 691 (702)
T ss_pred ECCCCC-CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecCCCCCCCC-CCc
Confidence 9 222 111110 00 12567888775532 22234777888998877665433222221 123
Q ss_pred cceeEEEE
Q 009871 212 VMNRRWVQ 219 (523)
Q Consensus 212 ~~~r~~~~ 219 (523)
+.+++|..
T Consensus 692 ~~~~~~~~ 699 (702)
T PRK11783 692 KIHNCWLI 699 (702)
T ss_pred ccceeEEE
Confidence 35677754
No 312
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=7.2e-07 Score=83.01 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=86.9
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+...++.+|||.|.|+|.++..|+.. +|..+|+.+|+-++..+.|++|.+.. ..++.+..+|+.+. .+ ...|
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~----~~-~~~v 164 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG----ID-EEDV 164 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc----cc-cccc
Confidence 34578999999999999999999976 77789999999999999999987542 34588899999875 23 3489
Q ss_pred eEEEEccccccceeeec-ceEEecCCeEEEee-CHHHH---HHHHHhCCCcEEEE
Q 009871 148 DIVTMERLTGKDQKISE-NFYVRGDGTRAFYF-SNDFL---TSLFKENGFDVEEL 197 (523)
Q Consensus 148 D~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~~~l---~~ll~~~Gf~~~~~ 197 (523)
|+|+. ++..++..+.. .-.++++|...+|. +.+++ .+.|++.||..++.
T Consensus 165 Dav~L-Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 165 DAVFL-DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred CEEEE-cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 99998 11122222211 11577888877654 55555 44456778876543
No 313
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.46 E-value=5.5e-07 Score=87.81 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
++.+.+.....++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++|+.. .++.+...|+.+.. .
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~~-~ 101 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKVD-L 101 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcCC-H
Confidence 44444444556788999999999999999988865 899999999999999887642 35666666665431 1
Q ss_pred hhhhhhcCCCccEEEEccccCCC
Q 009871 404 EAIKEENNEGFEVILGTDVSYIP 426 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~ 426 (523)
....+|.|+++- .|+.
T Consensus 102 ------~~~~~~~vv~Nl-PY~i 117 (272)
T PRK00274 102 ------SELQPLKVVANL-PYNI 117 (272)
T ss_pred ------HHcCcceEEEeC-Cccc
Confidence 111158888874 4543
No 314
>PLN02366 spermidine synthase
Probab=98.46 E-value=4.4e-07 Score=89.36 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCce
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
.+++.+||+||||.|..+..++++.+..+|+.||+++.+++.|++.... ..++++++.+|.... +. ..++++|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-l~-~~~~~~y 166 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-LK-NAPEGTY 166 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-Hh-hccCCCC
Confidence 3568899999999999999998774346799999999999999996532 347899999997532 00 1235689
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|+|++
T Consensus 167 DvIi~ 171 (308)
T PLN02366 167 DAIIV 171 (308)
T ss_pred CEEEE
Confidence 99999
No 315
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.9e-07 Score=80.66 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=67.2
Q ss_pred hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCC
Q 009871 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ 141 (523)
Q Consensus 63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~ 141 (523)
+...+.+++...++.+|||||||+|..+.-|++.. .+|+.+|..+...+.|+++....+ .++.+.++|...- +
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~--- 133 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-W--- 133 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-C---
Confidence 33344456677889999999999999999999884 379999999999999999875443 4799999998753 1
Q ss_pred CCCCceeEEEE
Q 009871 142 ISPSSIDIVTM 152 (523)
Q Consensus 142 ~~~~~fD~V~~ 152 (523)
-+...||.|+.
T Consensus 134 ~~~aPyD~I~V 144 (209)
T COG2518 134 PEEAPYDRIIV 144 (209)
T ss_pred CCCCCcCEEEE
Confidence 23478999987
No 316
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.43 E-value=2.2e-06 Score=86.57 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 336 GKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
+.+|||+.||+|..++.+++. ++.+|+++|+++.+++.+++|++.|+.. .+.+...|.... + .....+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~----~~~v~~~Da~~~-----l-~~~~~~ 114 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE----NIEVPNEDAANV-----L-RYRNRK 114 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEchhHHHH-----H-HHhCCC
Confidence 358999999999999999987 6789999999999999999999999764 344433322211 1 111357
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
||+|.. |. |. ...+++..+.+.+ +.+|.++++.
T Consensus 115 fDvIdl-DP-fG--s~~~fld~al~~~---------~~~glL~vTa 147 (374)
T TIGR00308 115 FHVIDI-DP-FG--TPAPFVDSAIQAS---------AERGLLLVTA 147 (374)
T ss_pred CCEEEe-CC-CC--CcHHHHHHHHHhc---------ccCCEEEEEe
Confidence 999998 66 53 3457888888888 4578887763
No 317
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.43 E-value=1e-06 Score=81.00 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=65.3
Q ss_pred CCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
..+|..|||+.||.|.+++.+|+. .++.|++.|++|.+++.+++|++.|++. ..+.+...|..+.. ..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---~~i~~~~~D~~~~~--------~~ 167 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---NRIEVINGDAREFL--------PE 167 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---TTEEEEES-GGG-----------T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---CeEEEEcCCHHHhc--------Cc
Confidence 347889999999999999998873 4568999999999999999999999986 56766666654321 14
Q ss_pred CCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871 412 EGFEVILGTDVSYIPEAILPLFATAKELT 440 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll 440 (523)
..||-|+++- +.....++..+..++
T Consensus 168 ~~~drvim~l----p~~~~~fl~~~~~~~ 192 (200)
T PF02475_consen 168 GKFDRVIMNL----PESSLEFLDAALSLL 192 (200)
T ss_dssp T-EEEEEE------TSSGGGGHHHHHHHE
T ss_pred cccCEEEECC----hHHHHHHHHHHHHHh
Confidence 6899999972 334456788888888
No 318
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.42 E-value=2.7e-07 Score=94.19 Aligned_cols=115 Identities=12% Similarity=0.185 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCC-CCCCCceeE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSR-QISPSSIDI 149 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~-~~~~~~fD~ 149 (523)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++...++ .+++++++|+.+. +.. ....++||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~-l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-HHHHHhcCCCCCE
Confidence 357899999999999987766542 4589999999999999999876543 3789999999753 000 012458999
Q ss_pred EEE--ccccccceeee------------cceEEecCCeEEEe-----eCHHHHHHHHHhC
Q 009871 150 VTM--ERLTGKDQKIS------------ENFYVRGDGTRAFY-----FSNDFLTSLFKEN 190 (523)
Q Consensus 150 V~~--~~~~~~~~~~~------------~~~~~~~~g~~~~~-----~~~~~l~~ll~~~ 190 (523)
|++ ..|......+. ..-.++++|.++.+ .+.+++.+++.++
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 999 22211110000 01257788877653 3667776666544
No 319
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.41 E-value=1.5e-06 Score=89.85 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=73.0
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-----CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
|.+.........+++.|||+|||+|.|+..+++.+ +.+|++++.++.++..++..+..|+.. ++|++...|-
T Consensus 174 l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~---~~V~vi~~d~ 250 (448)
T PF05185_consen 174 LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG---DKVTVIHGDM 250 (448)
T ss_dssp HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT---TTEEEEES-T
T ss_pred HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC---CeEEEEeCcc
Confidence 33444433333357899999999998876665543 569999999999998888888888875 6788887666
Q ss_pred CCCCcchhhhhhcCCCccEEEEccc--cCCCCChHHHHHHHHHHh
Q 009871 398 GNRDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELT 440 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~l~~ll 440 (523)
.+.+. +.+.|+||+=-+ +-..+..+..+....++|
T Consensus 251 r~v~l--------pekvDIIVSElLGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 251 REVEL--------PEKVDIIVSELLGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp TTSCH--------SS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred cCCCC--------CCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence 55421 458999996533 233557788889999999
No 320
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.41 E-value=3.1e-07 Score=87.35 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--ccCCCCCCCce
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DLSRQISPSSI 147 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~~~~~~~~~f 147 (523)
..++.+|||||||+|..+..+++.. ++.+|+++|+++++++.|+++.... ..+++++.+|+.+. .+....+.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 3567899999999999999898874 4689999999999999999987543 35799999999752 01001124689
Q ss_pred eEEEE
Q 009871 148 DIVTM 152 (523)
Q Consensus 148 D~V~~ 152 (523)
|+|+.
T Consensus 146 D~Vfi 150 (234)
T PLN02781 146 DFAFV 150 (234)
T ss_pred CEEEE
Confidence 99977
No 321
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.41 E-value=4.9e-07 Score=83.30 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=58.2
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
..+.+|||+|||+|.++..++.+. ..+|+++|+++.+++.|+++.+.. ..+++++++|+.+. ++ ...++||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~--~~~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LA--QPGTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hh--hcCCCceEEEE
Confidence 356799999999999998765554 358999999999999999986543 24789999998752 11 12457999988
No 322
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.41 E-value=2.6e-06 Score=77.52 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=82.5
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC----------EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD----------LVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 392 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~----------~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~ 392 (523)
+|..|.......++..|||--||+|.+.+.++..+.. ++++.|+++.+++.++.|+...+.. ..+.+
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---~~i~~ 92 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---DYIDF 92 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---GGEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---CceEE
Confidence 3444444334457789999999999888777665322 3899999999999999999988775 45666
Q ss_pred EeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
...|..+. ++..+.+|+||++ .-|... .+..+++.+++++ ++ ..+++....
T Consensus 93 ~~~D~~~l-------~~~~~~~d~Ivtn-PPyG~r~~~~~~~~~ly~~~~~~~~~~l---------~~-~~v~l~~~~-- 152 (179)
T PF01170_consen 93 IQWDAREL-------PLPDGSVDAIVTN-PPYGRRLGSKKDLEKLYRQFLRELKRVL---------KP-RAVFLTTSN-- 152 (179)
T ss_dssp EE--GGGG-------GGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHS---------TT-CEEEEEESC--
T ss_pred Eecchhhc-------ccccCCCCEEEEC-cchhhhccCHHHHHHHHHHHHHHHHHHC---------CC-CEEEEEECC--
Confidence 65444332 1335689999985 445422 3344555666666 34 444444322
Q ss_pred CChhHHHHHHHHcCCEEEEEcC
Q 009871 464 VDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 464 ~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
..+...+...+++..+...
T Consensus 153 ---~~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 153 ---RELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp ---CCHHHHHTSTTSEEEEEEE
T ss_pred ---HHHHHHhcchhhceEEEEE
Confidence 2355666666777766543
No 323
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.41 E-value=9.5e-07 Score=71.73 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=56.0
Q ss_pred eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc-ccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK-DFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+|||+|||+|..+..+++ .+..+++++|+++.+++.+++.. .....++++...|+.+... ...++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---ccCCceEEEEE
Confidence 589999999999999888 45678999999999999998432 2234678899999886521 24578999988
No 324
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.39 E-value=1.3e-06 Score=86.88 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=85.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC--CCCceE
Q 009871 314 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--FLAKLI 391 (523)
Q Consensus 314 ~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~--~~~~v~ 391 (523)
.-.|=-+.++..++.......++.+|||||||-|+-..=....+...++++|++...|+.|+++...-.... ...+..
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence 346888888888886544334788999999999876666666678899999999999999998873211100 001111
Q ss_pred EE-eeecCCCCcchhhh-hhcC--CCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 392 TK-RLEWGNRDHIEAIK-EENN--EGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 392 ~~-~ldw~~~~~~~~~~-~~~~--~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+. .+-..+. ....+. .+.+ .+||+|=+--.+++ .+....+++.+...| +|||.||.+.+.
T Consensus 121 f~a~f~~~D~-f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~L---------k~GG~FIgT~~d 188 (331)
T PF03291_consen 121 FIAEFIAADC-FSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLL---------KPGGYFIGTTPD 188 (331)
T ss_dssp CEEEEEESTT-CCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTE---------EEEEEEEEEEE-
T ss_pred chhheecccc-ccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhc---------CCCCEEEEEecC
Confidence 11 1222222 111111 1233 49999998866554 345677899999999 679999987654
No 325
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=3.9e-06 Score=82.76 Aligned_cols=126 Identities=19% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
.|.+|||+-||.|.+++.+|..+..+|+++|++|.+++.+++|+.+|++. ..+.....|-.+.. ...+.+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~gD~rev~-------~~~~~a 257 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE---GRVEPILGDAREVA-------PELGVA 257 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEeccHHHhh-------hccccC
Confidence 58999999999999999999998878999999999999999999999997 33555544433221 011579
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-----hhHHHHHHHHcCCEEEEE
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-----EPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-----~~~~~~~~~~~gf~~~~~ 483 (523)
|-|++.- +..-..++....+++ +++|.+..-...+... ...+...+.+.|.++...
T Consensus 258 DrIim~~----p~~a~~fl~~A~~~~---------k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 258 DRIIMGL----PKSAHEFLPLALELL---------KDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred CEEEeCC----CCcchhhHHHHHHHh---------hcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEE
Confidence 9999972 223455677777777 4466654433332222 134556666777655544
No 326
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.39 E-value=1.7e-06 Score=83.70 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=62.9
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 402 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~ 402 (523)
+++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++.. ..++.+...|..+..
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~- 88 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD- 88 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC-
Confidence 34555555555678899999999999999988884 5899999999999999988753 135666555544321
Q ss_pred chhhhhhcCCCccEEEEccccC
Q 009871 403 IEAIKEENNEGFEVILGTDVSY 424 (523)
Q Consensus 403 ~~~~~~~~~~~fD~Ii~~d~~y 424 (523)
...||.|+++-..+
T Consensus 89 --------~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 --------LPEFNKVVSNLPYQ 102 (258)
T ss_pred --------chhceEEEEcCCcc
Confidence 13589999975544
No 327
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=80.11 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=77.3
Q ss_pred eEEEECCCccHHHHHHHhcCC---CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 338 KVLELGCGCGGICSMVAAGSA---DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
+|||+|||.|....-+.+..+ -+|.+.|.||.+++..+.|..-+. .++.....|...++.. .+...+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dlt~~~~~---~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDLTSPSLK---EPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-----hhhcccceeccchhcc---CCCCcCcc
Confidence 799999999966555655433 389999999999999998876643 2333333444433211 23456899
Q ss_pred cEEEEcccc--CCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 415 EVILGTDVS--YIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 415 D~Ii~~d~~--y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
|+|++-=|+ -.++.....++.+.++| +|||.+++....
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~ll---------KPGG~llfrDYg 185 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLL---------KPGGSLLFRDYG 185 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHh---------CCCcEEEEeecc
Confidence 999876554 34778999999999999 789999987544
No 328
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.37 E-value=1.7e-06 Score=84.77 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=64.6
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
.+.+.......++.+|||||||+|.++..++..+ .+|+++|+|+.+++.+++++..++.. .++.+...|..+.
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~---~~v~ii~~Dal~~--- 97 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLA---SKLEVIEGDALKT--- 97 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCC---CcEEEEECCHhhh---
Confidence 4445454555678899999999999988888774 57999999999999999998876532 4566665555432
Q ss_pred hhhhhhcCCCccEEEEccccCC
Q 009871 404 EAIKEENNEGFEVILGTDVSYI 425 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~ 425 (523)
....||+|+++ +.|+
T Consensus 98 ------~~~~~d~VvaN-lPY~ 112 (294)
T PTZ00338 98 ------EFPYFDVCVAN-VPYQ 112 (294)
T ss_pred ------cccccCEEEec-CCcc
Confidence 12368998875 4554
No 329
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.36 E-value=1.5e-06 Score=79.00 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=62.7
Q ss_pred hhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcE-EEEEeeccCCc
Q 009871 60 RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRV-STFVCDLISDD 137 (523)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v-~~~~~d~~~~~ 137 (523)
+.-+...+.++++ ..+.+|||||||||.++.++++++|+.+-.-.|+++..+...++.... ...++ .-+..|+....
T Consensus 11 k~pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 11 KDPILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred HhHHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 3445555556665 233369999999999999999999999999999999886555543221 11222 34567777653
Q ss_pred cCC----CCCCCceeEEEE
Q 009871 138 LSR----QISPSSIDIVTM 152 (523)
Q Consensus 138 ~~~----~~~~~~fD~V~~ 152 (523)
.+. ++..++||+|+|
T Consensus 90 w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFC 108 (204)
T ss_pred CccccccccCCCCcceeee
Confidence 322 234678999999
No 330
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6e-06 Score=84.93 Aligned_cols=143 Identities=14% Similarity=0.069 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
+..|..+..+.....++.+||||=||.|.+++.+|.+ ..+|+++|+++++++.|++|++.|+.. ++.+...+-.+
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID----NVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEeCCHHH
Confidence 4456666666555567789999999999888888855 568999999999999999999999985 36665443322
Q ss_pred CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCE
Q 009871 400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 479 (523)
Q Consensus 400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~ 479 (523)
. .. .......||+||.... - ...-+.+++.+.++- |...+|++-.+ .+...-+..+.+.|++
T Consensus 353 ~---~~-~~~~~~~~d~VvvDPP-R-~G~~~~~lk~l~~~~----------p~~IvYVSCNP--~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 353 F---TP-AWWEGYKPDVVVVDPP-R-AGADREVLKQLAKLK----------PKRIVYVSCNP--ATLARDLAILASTGYE 414 (432)
T ss_pred H---hh-hccccCCCCEEEECCC-C-CCCCHHHHHHHHhcC----------CCcEEEEeCCH--HHHHHHHHHHHhCCeE
Confidence 1 11 0012347899997521 1 122346677666654 56777776533 2334456677788988
Q ss_pred EEEEcC
Q 009871 480 LVDKWP 485 (523)
Q Consensus 480 ~~~~~~ 485 (523)
+.++-.
T Consensus 415 i~~v~~ 420 (432)
T COG2265 415 IERVQP 420 (432)
T ss_pred EEEEEE
Confidence 877643
No 331
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.35 E-value=7.6e-07 Score=90.80 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=59.0
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.++.+|||+|||+|.++..++.. +.+|+|||+|+.+++.|+++.+..+ .+++|+++|+.+.. ....++||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA---TAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---HhcCCCCCEEEE
Confidence 34679999999999999999976 4679999999999999999875443 47999999997531 111246999988
No 332
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.33 E-value=1.1e-06 Score=78.64 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=38.4
Q ss_pred EEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 103 YACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 103 ~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+|+|+|+.|++.|+++.... ..+++++++|+.++ |+++++||+|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----PFDDCEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----CCCCCCeeEEEe
Confidence 58999999999998754311 24799999999988 788899999999
No 333
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.33 E-value=2.8e-06 Score=81.44 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=81.9
Q ss_pred HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
..+.......+.++|||||+|+|.++..+++..+. +++..|. |++++.+++ ..++.+...|+.+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f~~--- 155 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFFDP--- 155 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TTTC---
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHHhh---
Confidence 44444445556679999999999988888887544 8999999 999998887 27889988888732
Q ss_pred hhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCC--cEEEEEEeec
Q 009871 404 EAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQ--PAFILCHIFR 462 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~--g~~~l~~~~r 462 (523)
+ +. +|+|+.+.++++ .+....+++.+...| +|| |+++|.....
T Consensus 156 -----~-P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al---------~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 156 -----L-PV-ADVYLLRHVLHDWSDEDCVKILRNAAAAL---------KPGKDGRLLIIEMVL 202 (241)
T ss_dssp -----C-SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHS---------EECTTEEEEEEEEEE
T ss_pred -----h-cc-ccceeeehhhhhcchHHHHHHHHHHHHHh---------CCCCCCeEEEEeecc
Confidence 2 33 999999999977 446778889999999 557 9998887764
No 334
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.31 E-value=8e-07 Score=88.35 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=71.4
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-------C----CCcEEEEEeeccCCccCCCCC
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------T----ETRVSTFVCDLISDDLSRQIS 143 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-------~----~~~v~~~~~d~~~~~~~~~~~ 143 (523)
++.+|||+|||-|..+.-+.... -..++|+|+|+..|+.|+++... . .-...|+.+|.....+...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 77899999999999988887764 34799999999999999997611 1 134667888887554433344
Q ss_pred C--CceeEEEE--------------ccccccceeeecceEEecCCeEEEe-eCHHHHHHHHHh
Q 009871 144 P--SSIDIVTM--------------ERLTGKDQKISENFYVRGDGTRAFY-FSNDFLTSLFKE 189 (523)
Q Consensus 144 ~--~~fD~V~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~l~~ll~~ 189 (523)
+ ..||+|-| ..++..... .++++|.++-. ...+.|.+.|++
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~-----~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSS-----LLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHH-----TEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHH-----hcCCCCEEEEEecCHHHHHHHHHh
Confidence 4 49999999 222222222 57788877653 356667666664
No 335
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.29 E-value=3.8e-06 Score=79.88 Aligned_cols=108 Identities=12% Similarity=0.041 Sum_probs=76.9
Q ss_pred CCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--c
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--N 410 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~ 410 (523)
+.++|||||+++|.-++.+|.. . ..+|+.+|.+++..+.|+.|++..++. ++|.+...+..+ .+..+... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~---~~I~~~~G~a~e--~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPALP--VLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeccHHH--HHHHHHhcccc
Confidence 5579999999999555555543 2 348999999999999999999998876 567665543322 12211110 1
Q ss_pred CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
.++||+|+.- .+.......+..+.++| ++||.+++-.
T Consensus 154 ~~~fD~iFiD---adK~~Y~~y~~~~l~ll---------~~GGviv~DN 190 (247)
T PLN02589 154 HGTFDFIFVD---ADKDNYINYHKRLIDLV---------KVGGVIGYDN 190 (247)
T ss_pred CCcccEEEec---CCHHHhHHHHHHHHHhc---------CCCeEEEEcC
Confidence 2589999985 55777888888888999 6788877543
No 336
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.28 E-value=7.9e-06 Score=74.80 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
...+.||.|||.|+.+..++-.. --+|.-||+++..++.|++.... .....++++..+++. ..++++||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----TPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----cCCCCcEeEEEeh
Confidence 46789999999999998775553 13599999999999999976543 234467888888865 223579999999
Q ss_pred -----------cccc-------ccceee--ecc-------eEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871 153 -----------ERLT-------GKDQKI--SEN-------FYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 199 (523)
Q Consensus 153 -----------~~~~-------~~~~~~--~~~-------~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~ 199 (523)
..|+ .+.+.+ .+| .+-..|+... .+.+.++++|++||+++++...
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvT--Rs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVT--RSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEE--EEHHHHHHHHHHCT-EEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeee--cCHHHHHHHHHHcCCEEEEecc
Confidence 1111 222221 111 1112222222 3889999999999999876643
No 337
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=4e-07 Score=86.44 Aligned_cols=141 Identities=26% Similarity=0.268 Sum_probs=89.9
Q ss_pred EEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHH
Q 009871 297 KIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQ 376 (523)
Q Consensus 297 ~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~ 376 (523)
.|...+.........||+.+|++++.|..++.+++...++.+|.++|||++ +...++++.+..|...|-...+.-+...
T Consensus 52 ~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~-~~~~~~a~~~~~v~~~~~~~~~~~~l~~ 130 (262)
T KOG2497|consen 52 KVILQSHSLRFLLARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIA-LKHVLAARVPDCVVTLDSLRCAGLLLEE 130 (262)
T ss_pred eeeecchHHHHHHHHhccccchHHHHHHHHHhhCcccccccchHhhccCHH-HHHHHHHhcccceecCCccCcHHHHHHH
Confidence 333333333456789999999999999999999998888999999999998 4445566655555555544444444444
Q ss_pred HHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhc
Q 009871 377 NVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTAS 442 (523)
Q Consensus 377 n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~ 442 (523)
+...+.......+-+.-.+.|......+ ......+|+|+++|++|. .....++.++..+|..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~ 192 (262)
T KOG2497|consen 131 IILLSRDLSLEVRDSAPELNQAFLESKP---ETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLR 192 (262)
T ss_pred HHhccccccccccccchhHHHHHHhcCc---ccccchhhheeccCeeeh-hhhhHHHHHHHHHHHh
Confidence 4333322211111122222222111110 011235999999999999 8899999999998843
No 338
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.26 E-value=2.8e-06 Score=79.57 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHH-HHHhcCCCC-------CCCceE
Q 009871 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQ-NVTANLKPP-------FLAKLI 391 (523)
Q Consensus 320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~-n~~~n~~~~-------~~~~v~ 391 (523)
+..|.+++.. ....++.+||..|||.|.-...+|++|. +|+++|+|+.+++.+.+ |........ ...+|.
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 5678888876 2334677999999999988888888875 79999999999998832 222111110 123455
Q ss_pred EEeeecCCCCcchhhhhhcCCCccEEEEccc--cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEE-EEEEeecC-----
Q 009871 392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELTASSNKSLREDQQPAF-ILCHIFRQ----- 463 (523)
Q Consensus 392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~-~l~~~~r~----- 463 (523)
+...|.-+.. .-..++||+|+=.-+ -..++..+...+.+.++| +|+|.+ +++.....
T Consensus 101 ~~~gDfF~l~------~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll---------~p~g~~lLi~l~~~~~~~~G 165 (218)
T PF05724_consen 101 IYCGDFFELP------PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLL---------KPGGRGLLITLEYPQGEMEG 165 (218)
T ss_dssp EEES-TTTGG------GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCE---------EEEEEEEEEEEES-CSCSSS
T ss_pred EEEcccccCC------hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHh---------CCCCcEEEEEEEcCCcCCCC
Confidence 5555544321 111247999995433 345788999999999999 568884 33333211
Q ss_pred ----CChhHHHHHHHHcCCEEEEEcC
Q 009871 464 ----VDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 464 ----~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
.+.+++.+.+. .+|+++.+..
T Consensus 166 PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 22334445554 7899887755
No 339
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.25 E-value=2.2e-06 Score=83.38 Aligned_cols=73 Identities=25% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
-.++.|||||||+|.++...++.+ ..+|+|||.|.-+ +.|++....+ ...++++++.+++..+ |.+++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L----P~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL----PVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec----CccceeEEe
Confidence 358899999999999999988887 5679999998776 8888765433 3568999999988744 467899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 133 S 133 (346)
T KOG1499|consen 133 S 133 (346)
T ss_pred e
Confidence 9
No 340
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.25 E-value=8.8e-07 Score=80.57 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=91.2
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
....+.+|||.+.|-|.++...++++ ..+|+.|+.+|..+++|+-|.-.. ...++.+.+|+.+. -..|+|.+||
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~--V~~~~D~sfD 207 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV--VKDFDDESFD 207 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH--HhcCCccccc
Confidence 34678999999999999999999884 238999999999999999876321 24689999998742 2257899999
Q ss_pred EEEE--ccccccceeeecce------EEecCCeEEEee-----------CHHHHHHHHHhCCCcEEEE
Q 009871 149 IVTM--ERLTGKDQKISENF------YVRGDGTRAFYF-----------SNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 149 ~V~~--~~~~~~~~~~~~~~------~~~~~g~~~~~~-----------~~~~l~~ll~~~Gf~~~~~ 197 (523)
+|+- .||...+.-....| .++++|.+.+|. -+..+.+.|+++||.+++.
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 9998 45533332222211 467777777653 3578899999999997654
No 341
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.23 E-value=2.3e-05 Score=79.56 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=60.5
Q ss_pred CeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 77 KDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 77 ~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
-++|-+|||.-.+...+.+. +.. |+-+|+|+..++..............+...|+..+ .|++++||+|+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~d--I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l----~fedESFdiVId 120 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFED--ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL----VFEDESFDIVID 120 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCC--ceeccccHHHHHHHHhccccCCcceEEEEecchhc----cCCCcceeEEEe
Confidence 38999999999999888877 334 99999999999998876545557789999999988 788999999987
No 342
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.22 E-value=1.9e-05 Score=73.95 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=81.2
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC-----------CCC
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP-----------PFL 387 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~-----------~~~ 387 (523)
....|.+++.... ..++.+||..|||.|.-...+|.+|.. |+++|+|+.+++.+.+ .|+.. ...
T Consensus 28 pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~ 102 (226)
T PRK13256 28 PNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKG 102 (226)
T ss_pred CCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHH---HcCCCcceecccccceecc
Confidence 3455666665433 236789999999999888889888764 9999999999998754 12111 011
Q ss_pred CceEEEeeecCCCCcchhhhhhcCCCccEEEEcc--ccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTD--VSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d--~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
..+.+...|+-+.... .-..++||+|+-.- +-..++.....++.+.++| +|+|.+++...
T Consensus 103 ~~i~~~~gD~f~l~~~----~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL---------~pgg~llll~~ 164 (226)
T PRK13256 103 DDIEIYVADIFNLPKI----ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC---------SNNTQILLLVM 164 (226)
T ss_pred CceEEEEccCcCCCcc----ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh---------CCCcEEEEEEE
Confidence 3455555554432110 00125799987443 3345778889999999999 66777665443
No 343
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.21 E-value=1.7e-06 Score=78.65 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=59.1
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhCCCCE---------EEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVF---------VYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR 140 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~ 140 (523)
...++..|||-=||+|.++...+...++.. ++|+|+++++++.|+++.... ...+.+.+.|+.++
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l---- 100 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL---- 100 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG----
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc----
Confidence 335678999999999999987776655555 899999999999999987532 35689999999987
Q ss_pred CCCCCceeEEEE
Q 009871 141 QISPSSIDIVTM 152 (523)
Q Consensus 141 ~~~~~~fD~V~~ 152 (523)
++.++++|+|++
T Consensus 101 ~~~~~~~d~Ivt 112 (179)
T PF01170_consen 101 PLPDGSVDAIVT 112 (179)
T ss_dssp GGTTSBSCEEEE
T ss_pred ccccCCCCEEEE
Confidence 566789999999
No 344
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.18 E-value=1.3e-05 Score=70.84 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=72.1
Q ss_pred CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC-cc
Q 009871 337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-FE 415 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~-fD 415 (523)
..|+|+.||.|+-+..+|..+ .+|+++|+++..++.++.|++.-++. .++.+...||.+.. . .+.... ||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~---~~I~~i~gD~~~~~--~---~~~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVA---DNIDFICGDFFELL--K---RLKSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-G---GGEEEEES-HHHHG--G---GB------S
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCCHHHHH--h---hcccccccc
Confidence 369999999999999999885 57999999999999999999998875 68999988886531 1 121122 89
Q ss_pred EEEEccc----------cCCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH
Q 009871 416 VILGTDV----------SYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA 473 (523)
Q Consensus 416 ~Ii~~d~----------~y~~------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~ 473 (523)
+|+.+.. .|+. -.+..+++...++. +. ++.+.+|+.+..++.+..
T Consensus 72 ~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t----------~n---v~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 72 VVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT----------PN---VVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp EEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-----------S----EEEEEETTB-HHHHHHT-
T ss_pred EEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC----------CC---EEEEeCCCCCHHHHHHHh
Confidence 9997742 2222 14555666655554 12 234467888887776664
No 345
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=8.2e-06 Score=77.36 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=68.4
Q ss_pred ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871 55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134 (523)
Q Consensus 55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~ 134 (523)
+|..+...+ +.+-+.....++..|||||+|.|.++..|+++. ..|++|++++.++...++... ...+++.+++|+.
T Consensus 11 nFL~d~~v~-~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaL 86 (259)
T COG0030 11 NFLIDKNVI-DKIVEAANISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDAL 86 (259)
T ss_pred ccccCHHHH-HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchh
Confidence 455444443 333344444568899999999999999999994 559999999999999998764 3478999999999
Q ss_pred CCccCCCCCCCceeEEEE
Q 009871 135 SDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 135 ~~~~~~~~~~~~fD~V~~ 152 (523)
..+++.-. .++.|++
T Consensus 87 k~d~~~l~---~~~~vVa 101 (259)
T COG0030 87 KFDFPSLA---QPYKVVA 101 (259)
T ss_pred cCcchhhc---CCCEEEE
Confidence 88554211 5777777
No 346
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.17 E-value=4.2e-06 Score=81.53 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.+.+||+||||+|..+..+++..+..+|+++|+++.+++.|+++... ..++++++.+|.... + ...+++||
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l--~~~~~~yD 147 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-L--ADTENTFD 147 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-H--HhCCCCcc
Confidence 456699999999999998888775556799999999999999986421 235788888887531 0 11246899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 148 vIi~ 151 (270)
T TIGR00417 148 VIIV 151 (270)
T ss_pred EEEE
Confidence 9998
No 347
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.17 E-value=9.4e-06 Score=77.49 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-------CCcEEEEEeeccCCccCC--CCCC
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-------ETRVSTFVCDLISDDLSR--QISP 144 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~--~~~~ 144 (523)
.++..++|+|||-|..++.+-+.+- ..++|+||++..|++|+++.... .-.+.|+.+|.....+.. ++++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4678899999999999988876642 35999999999999999875321 124789999987643321 2355
Q ss_pred CceeEEEE--------------ccccccceeeecceEEecCCeEEEee-CHHHHHHHHHhC
Q 009871 145 SSIDIVTM--------------ERLTGKDQKISENFYVRGDGTRAFYF-SNDFLTSLFKEN 190 (523)
Q Consensus 145 ~~fD~V~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~l~~ll~~~ 190 (523)
.+||+|-| ..++..... .++|+|.++-.. ..+.|..-|+++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~-----~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAK-----CLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHh-----hcCCCcEEEEecCcHHHHHHHHHhc
Confidence 66999988 122222222 678888877533 566778888765
No 348
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.16 E-value=8.4e-06 Score=76.09 Aligned_cols=73 Identities=27% Similarity=0.303 Sum_probs=62.5
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
+..++..|||||-|||.++..|++. +.+|+|+++++.|+....++.+... ..++.+++|+...++| .||+
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P------~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP------RFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc------ccce
Confidence 3467889999999999999999999 5569999999999999988775443 7899999999987543 4999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
+++
T Consensus 127 cVs 129 (315)
T KOG0820|consen 127 CVS 129 (315)
T ss_pred eec
Confidence 988
No 349
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=2e-05 Score=71.49 Aligned_cols=116 Identities=14% Similarity=0.246 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
++...|-|+|||.+.++..+.. ..+|+..|+-+. + + ....+|+.+. |++++++|++++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-------n-----~--~Vtacdia~v----PL~~~svDv~Vfc 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-------N-----P--RVTACDIANV----PLEDESVDVAVFC 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-------S-----T--TEEES-TTS-----S--TT-EEEEEEE
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-------C-----C--CEEEecCccC----cCCCCceeEEEEE
Confidence 4567899999999999855432 356999998553 1 2 3578999888 889999999988
Q ss_pred --------ccccccceeeecceEEecCCeEEE------eeCHHHHHHHHHhCCCcEEEEEeEeeeeeecccCccceeEEE
Q 009871 153 --------ERLTGKDQKISENFYVRGDGTRAF------YFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV 218 (523)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~r~~~ 218 (523)
..|+.+..+ .++++|.+.. +-..+...+.++..||+....... +..++
T Consensus 130 LSLMGTn~~~fi~EA~R-----vLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~-------------n~~F~ 191 (219)
T PF05148_consen 130 LSLMGTNWPDFIREANR-----VLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES-------------NKHFV 191 (219)
T ss_dssp S---SS-HHHHHHHHHH-----HEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---------------STTEE
T ss_pred hhhhCCCcHHHHHHHHh-----eeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC-------------CCeEE
Confidence 333344444 6777887764 346788899999999997643211 13466
Q ss_pred EEEEEecCCC
Q 009871 219 QAVFCSSGGA 228 (523)
Q Consensus 219 ~~~~~~~~~~ 228 (523)
-..|+|....
T Consensus 192 ~f~F~K~~~~ 201 (219)
T PF05148_consen 192 LFEFKKIRKK 201 (219)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEEcCcc
Confidence 6777777643
No 350
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=3.6e-05 Score=69.78 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=82.0
Q ss_pred cccchhHHH--HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871 314 LMLWESAHL--MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 391 (523)
Q Consensus 314 ~~~W~~a~~--la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~ 391 (523)
...||--.+ +.+||...+ ++..|-|+|||-+.++..+. ...+|...|+-+ .| ..|.
T Consensus 52 v~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva-----------~n------~~Vt 109 (219)
T PF05148_consen 52 VKKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA-----------PN------PRVT 109 (219)
T ss_dssp HCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH----S---EEEEESS------------SS------TTEE
T ss_pred HhcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc--cCceEEEeeccC-----------CC------CCEE
Confidence 357887765 778887655 56799999999986653322 223699999843 11 2233
Q ss_pred EEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHH
Q 009871 392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSML 470 (523)
Q Consensus 392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~ 470 (523)
+ .|.... ++++++.|++|.+=.+. -.++..++....++| +++|.++++...-+ .+...|.
T Consensus 110 a--cdia~v-------PL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvL---------K~~G~L~IAEV~SRf~~~~~F~ 170 (219)
T PF05148_consen 110 A--CDIANV-------PLEDESVDVAVFCLSLM-GTNWPDFIREANRVL---------KPGGILKIAEVKSRFENVKQFI 170 (219)
T ss_dssp E--S-TTS--------S--TT-EEEEEEES----SS-HHHHHHHHHHHE---------EEEEEEEEEEEGGG-S-HHHHH
T ss_pred E--ecCccC-------cCCCCceeEEEEEhhhh-CCCcHHHHHHHHhee---------ccCcEEEEEEecccCcCHHHHH
Confidence 2 222221 56678999999873333 456999999999999 67999999987755 4567899
Q ss_pred HHHHHcCCEEEEEcCC
Q 009871 471 SAATQCGFRLVDKWPS 486 (523)
Q Consensus 471 ~~~~~~gf~~~~~~~~ 486 (523)
+.+++.||++......
T Consensus 171 ~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 171 KALKKLGFKLKSKDES 186 (219)
T ss_dssp HHHHCTTEEEEEEE--
T ss_pred HHHHHCCCeEEecccC
Confidence 9999999999886543
No 351
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.09 E-value=1.3e-05 Score=73.48 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=84.2
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
...++||.|||.|.++-.++.....+|-++|..+..++.|++.+..+.. ....+... .+....+ .+.+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~----~v~~~~~~------gLQ~f~P-~~~~Y 123 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP----RVGEFYCV------GLQDFTP-EEGKY 123 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC----CEEEEEES-------GGG-----TT-E
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC----CcceEEec------CHhhccC-CCCcE
Confidence 4569999999999999877777788999999999999999876544111 11111111 1111111 13599
Q ss_pred cEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------C------ChhHHHHHHHHcCC
Q 009871 415 EVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------V------DEPSMLSAATQCGF 478 (523)
Q Consensus 415 D~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------~------~~~~~~~~~~~~gf 478 (523)
|+|+.-+|+-+ .+++-.+++.++..| +|+|.+++=...-. . +...+.+.++++|+
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L---------~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQAL---------KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHE---------EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhC---------cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 99999999876 347888899999999 56888886322211 1 23568899999999
Q ss_pred EEEEEcC
Q 009871 479 RLVDKWP 485 (523)
Q Consensus 479 ~~~~~~~ 485 (523)
++.+.-.
T Consensus 195 ~~v~~~~ 201 (218)
T PF05891_consen 195 RLVKEEK 201 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9987644
No 352
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=73.40 Aligned_cols=134 Identities=17% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.+|.+|||-..|.|..++.++++|+.+|+-++.+|.+|++|..|--..++.. ..+.+. .|+ ..+-+.++.+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~--~~i~ii---lGD--~~e~V~~~~D~s 205 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE--IAIKII---LGD--AYEVVKDFDDES 205 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc--cccEEe---ccc--HHHHHhcCCccc
Confidence 4789999999999988888888999899999999999999986644433321 123332 232 233445677889
Q ss_pred ccEEEEccccCCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----cCCCh-hHHHHHHHHcCCEEEEE
Q 009871 414 FEVILGTDVSYIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIF-----RQVDE-PSMLSAATQCGFRLVDK 483 (523)
Q Consensus 414 fD~Ii~~d~~y~~~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-----r~~~~-~~~~~~~~~~gf~~~~~ 483 (523)
||+||--..-+... .-..+-+.+.++| ++||.++--... |..+. ..+.+.+++.||.+...
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiL---------krgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRIL---------KRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHc---------CcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 99999644333211 3456788889999 668877642221 33444 35788999999996554
No 353
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.09 E-value=1.2e-05 Score=75.33 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=49.8
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
...++||||+|.|..+..++..+.. |++.|+|+.|....+++. |.+.|..+. .-.+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w----~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKKG--------FTVLDIDDW----QQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhCC--------CeEEehhhh----hccCCceEEEee
Confidence 4678999999999999999998876 999999999998887752 223344332 112568999999
No 354
>PLN02823 spermine synthase
Probab=98.08 E-value=3.6e-05 Score=76.72 Aligned_cols=134 Identities=21% Similarity=0.245 Sum_probs=83.3
Q ss_pred CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
..++||.||+|.|.++..+++. ...+|+++|+++++++.+++....+.......++++...|-. .-+ ....++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~-----~~L-~~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR-----AEL-EKRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH-----HHH-hhCCCC
Confidence 4479999999999888777775 457899999999999999998765532222356655543211 111 123468
Q ss_pred ccEEEEccccCCCC--------ChHHHHH-HHHHHhhccCCCCCCCCCcEEEEEEeecCC--C---hhHHHHHHHHcCCE
Q 009871 414 FEVILGTDVSYIPE--------AILPLFA-TAKELTASSNKSLREDQQPAFILCHIFRQV--D---EPSMLSAATQCGFR 479 (523)
Q Consensus 414 fD~Ii~~d~~y~~~--------~~~~l~~-~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~--~---~~~~~~~~~~~gf~ 479 (523)
||+|+. |+. ++. .-..+++ .+++.| +|+|.+++-...... . ...+...+++. |.
T Consensus 177 yDvIi~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L---------~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~ 244 (336)
T PLN02823 177 FDVIIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKL---------NPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FK 244 (336)
T ss_pred ccEEEe-cCC-CccccCcchhhccHHHHHHHHHHhc---------CCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CC
Confidence 999997 432 221 1235676 788999 679987764332111 1 12345555554 44
Q ss_pred EEEEcCC
Q 009871 480 LVDKWPS 486 (523)
Q Consensus 480 ~~~~~~~ 486 (523)
....+..
T Consensus 245 ~v~~y~~ 251 (336)
T PLN02823 245 YVVPYTA 251 (336)
T ss_pred CEEEEEe
Confidence 4444443
No 355
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.08 E-value=2.6e-05 Score=70.79 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=74.1
Q ss_pred eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEEcccc
Q 009871 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTMERLT 156 (523)
Q Consensus 78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~~ 156 (523)
+++|||+|.|.-+..|+=.+|+.+|+-+|.+..-+...+.-... .-.++++++..+++ +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehhc
Confidence 89999999999999999999999999999999988777664322 23579999999986 1346789999992221
Q ss_pred ccceeeec--ceEEecCCeEEEee---CHHH---HHHHHHhCCCcEEEEEe
Q 009871 157 GKDQKISE--NFYVRGDGTRAFYF---SNDF---LTSLFKENGFDVEELGL 199 (523)
Q Consensus 157 ~~~~~~~~--~~~~~~~g~~~~~~---~~~~---l~~ll~~~Gf~~~~~~~ 199 (523)
+...+.+ .-+++++|.++.+- ..+| ....+...|.+...+..
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence 1100000 01345555555543 2333 45556666666655543
No 356
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=1.8e-05 Score=72.64 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=42.4
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~ 120 (523)
..+..+|||||-+|.++..+++.+-...|+|+||++..|+.|+++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 35678999999999999999999866789999999999999999764
No 357
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.07 E-value=5.6e-06 Score=76.67 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=60.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--ccCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DLSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~~~~~~~~~fD 148 (523)
...++|||||||+|..+..|++..| +++|+.+|++++..+.|+++.... ..+++++.+|+.+. .+....+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4678999999999999999998865 689999999999999999976433 36899999998642 011111246899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+||.
T Consensus 124 ~VFi 127 (205)
T PF01596_consen 124 FVFI 127 (205)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 358
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.06 E-value=3.8e-05 Score=66.54 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 009871 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 393 (523)
Q Consensus 316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 393 (523)
+-|++-.+|+.+....+...|..|||+|.|||.++-.+.++|. ..++++++|++.+..+.+....- .+.
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~---------~ii 99 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV---------NII 99 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc---------ccc
Confidence 4466777888888877777899999999999999999998864 48999999999988876643321 111
Q ss_pred eeecCCCCcch-hhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHh
Q 009871 394 RLEWGNRDHIE-AIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELT 440 (523)
Q Consensus 394 ~ldw~~~~~~~-~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll 440 (523)
..|-. .+. .+.......||.|+++=.+-.. ..--.+++.+...|
T Consensus 100 ~gda~---~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl 146 (194)
T COG3963 100 NGDAF---DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRL 146 (194)
T ss_pred ccchh---hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhc
Confidence 11111 111 1223445689999998555443 33445566666666
No 359
>PLN02476 O-methyltransferase
Probab=98.05 E-value=5.2e-06 Score=80.03 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC---CCCCCc
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR---QISPSS 146 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~---~~~~~~ 146 (523)
..+.++|||||||+|..+..++... ++.+|+++|.++++++.|+++.+.. ..+++++.+|+.+. ++. ....++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-LKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHHhcccCCC
Confidence 3568899999999999999999874 4678999999999999999987543 35799999998642 111 012368
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+||.
T Consensus 195 FD~VFI 200 (278)
T PLN02476 195 YDFAFV 200 (278)
T ss_pred CCEEEE
Confidence 999976
No 360
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.04 E-value=3.2e-06 Score=74.57 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=52.2
Q ss_pred eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc-eeEEEE
Q 009871 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS-IDIVTM 152 (523)
Q Consensus 78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~ 152 (523)
.|+|+.||.|..+..+++.+. +|+|||+++..++.|+.++..- ..++.++++|+.+.- ..+..+. ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~--~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL--KRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG--GGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH--hhccccccccEEEE
Confidence 699999999999999999964 4999999999999999987533 468999999997641 1122222 899998
No 361
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.03 E-value=9.5e-06 Score=74.57 Aligned_cols=74 Identities=24% Similarity=0.281 Sum_probs=56.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++..|||.-||.|.++..+++..+...|+|+|++|.+++.++++...+ ..++..+++|+... . +.+.||.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~----~-~~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF----L-PEGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh----c-CccccCEEE
Confidence 5688999999999999999999766788999999999999999987543 35689999999865 2 278999999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 175 m 175 (200)
T PF02475_consen 175 M 175 (200)
T ss_dssp E
T ss_pred E
Confidence 9
No 362
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.03 E-value=6.5e-06 Score=83.20 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=49.4
Q ss_pred CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccC
Q 009871 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS 135 (523)
Q Consensus 77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 135 (523)
.+|||+|||+|.++..|++... +|+|||+|+.|++.|+++...++ .+++++++|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988853 69999999999999999875443 479999999975
No 363
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.03 E-value=8e-06 Score=74.94 Aligned_cols=76 Identities=8% Similarity=0.033 Sum_probs=57.7
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCC-CceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP-SSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~-~~fD~V~ 151 (523)
.+.+|||++||+|.++..++.++. .+|++||.++.+++.++++..... .+++++++|+.+. +...... ..||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-LKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-HHHhhccCCCceEEE
Confidence 578999999999999999999864 479999999999999999875432 4688999999542 1101112 2478887
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
.
T Consensus 127 ~ 127 (189)
T TIGR00095 127 L 127 (189)
T ss_pred E
Confidence 6
No 364
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.02 E-value=1.6e-05 Score=74.72 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=47.9
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHH-HHhccccCCCcEEEEEeeccCCccCC-CCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL-VMTHKDFTETRVSTFVCDLISDDLSR-QISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~-a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~ 151 (523)
.++.+|||+|||||.++..+++.+ ..+|+|+|+++.|+.. .+++.+ -..+...|+...+... +..-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 467789999999999999999884 3579999999988875 444321 1123333444221110 11223788888
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 149 i 149 (228)
T TIGR00478 149 I 149 (228)
T ss_pred e
Confidence 7
No 365
>PRK00536 speE spermidine synthase; Provisional
Probab=98.02 E-value=0.00013 Score=69.99 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=83.7
Q ss_pred CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 414 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f 414 (523)
.-++||=+|.|-|+....+++.. .+|+++|+|+++++.+++-+..........++++.. |-. ....++|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--------~~~~~~f 140 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--------DLDIKKY 140 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--------hccCCcC
Confidence 44799999999998888888875 499999999999999988333221122345666653 211 1123689
Q ss_pred cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEEEEcCC
Q 009871 415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~~~~~~ 486 (523)
|+||. |.++. +.+.+.+++.| +|+|.++.-...-....+ .+...+++ .|........
T Consensus 141 DVIIv-Ds~~~----~~fy~~~~~~L---------~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~ 200 (262)
T PRK00536 141 DLIIC-LQEPD----IHKIDGLKRML---------KEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVA 200 (262)
T ss_pred CEEEE-cCCCC----hHHHHHHHHhc---------CCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEe
Confidence 99996 76655 56778899999 679988874433222232 33444445 6885555433
No 366
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.02 E-value=0.00017 Score=67.05 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=97.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc
Q 009871 311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAK 389 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 389 (523)
+-|..++++++.=+.|+.++..+ .|++||=||=+-- .++.++.. .+++|+.+|+++.+++..++.++..++.
T Consensus 21 DQ~~~T~eT~~~Ra~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~----- 93 (243)
T PF01861_consen 21 DQGYATPETTLRRAALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP----- 93 (243)
T ss_dssp T---B-HHHHHHHHHHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------
T ss_pred ccccccHHHHHHHHHHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-----
Confidence 34577888999999999888654 8999999997763 55555543 4679999999999999999999887763
Q ss_pred eEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---
Q 009871 390 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--- 466 (523)
Q Consensus 390 v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--- 466 (523)
+.+...|..+.-. +-..++||+++. |..|-.+.+..++...-..|+ .+|+..++++..+..+.
T Consensus 94 i~~~~~DlR~~LP-----~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk--------~~g~~gy~~~~~~~~s~~~~ 159 (243)
T PF01861_consen 94 IEAVHYDLRDPLP-----EELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALK--------GEGCAGYFGFTHKEASPDKW 159 (243)
T ss_dssp EEEE---TTS--------TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB---------STT-EEEEEE-TTT--HHHH
T ss_pred eEEEEecccccCC-----HHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhC--------CCCceEEEEEecCcCcHHHH
Confidence 7777777776411 112469999998 889999999999999888882 24667788887765332
Q ss_pred hHHHHHHHHcCCEEEEEcC
Q 009871 467 PSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 467 ~~~~~~~~~~gf~~~~~~~ 485 (523)
..+.+.+.+.||-+.++.+
T Consensus 160 ~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 160 LEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp HHHHHHHHTS--EEEEEEE
T ss_pred HHHHHHHHHCCcCHHHHHh
Confidence 2566777789999999865
No 367
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.02 E-value=6.2e-06 Score=74.63 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
..+.+|||+|||+|..+..++...+..+|+..|.++ .++.++.+...+ ..++.+...|..+.........++||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 467899999999999999988885567899999999 999998876543 366777777765421011134568999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 123 Ila 125 (173)
T PF10294_consen 123 ILA 125 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 368
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.01 E-value=3e-05 Score=75.20 Aligned_cols=87 Identities=22% Similarity=0.215 Sum_probs=49.5
Q ss_pred CCeEEEECCCccHH-HHHHHhcCCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 336 GKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 336 ~~~VLElG~G~G~l-~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
.-++||||||...+ +++.++...-+++|||+++.+++.|++|++.| .+. .+|.+....=. ...+..+. ...+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~---~~I~l~~~~~~-~~i~~~i~-~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE---SRIELRKQKNP-DNIFDGII-QPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T---TTEEEEE--ST--SSTTTST-T--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc---cceEEEEcCCc-cccchhhh-cccce
Confidence 56899999999855 44445555569999999999999999999999 765 56766543211 11122111 12458
Q ss_pred ccEEEEccccCCCC
Q 009871 414 FEVILGTDVSYIPE 427 (523)
Q Consensus 414 fD~Ii~~d~~y~~~ 427 (523)
||+.+|+..+|...
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999999854
No 369
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.01 E-value=8.1e-06 Score=82.86 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccC
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS 135 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 135 (523)
+.+|||++||+|.++..+++... +|+|||+|+.|++.|+++...++ .+++++++|+.+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 35799999999999999988753 69999999999999999875443 479999999865
No 370
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.01 E-value=2.2e-05 Score=75.74 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=51.2
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
++.+.+.....++.+|||+|||+|.++..++..+. .|+++|+++.+++.++.++.. ..++.+...|..+
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhc
Confidence 44444444455788999999999999998888874 699999999999999887643 1345555555443
No 371
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.01 E-value=2.1e-05 Score=77.01 Aligned_cols=124 Identities=17% Similarity=0.126 Sum_probs=85.1
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEe-eccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVC-DLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~-d~~~~~~~~~~~~~~fD 148 (523)
....++..|||==||||.++....-. +++++|+|++..|++-|+.|..+- .....+... |++.+ |+++++||
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l----pl~~~~vd 266 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL----PLRDNSVD 266 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC----CCCCCccc
Confidence 34467889999999999999776655 788999999999999999988643 344444555 99988 67888999
Q ss_pred EEEE----ccc-cccceeeec---------ceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871 149 IVTM----ERL-TGKDQKISE---------NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 201 (523)
Q Consensus 149 ~V~~----~~~-~~~~~~~~~---------~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~ 201 (523)
.|++ .+- ..++..+.+ ...++++|..+++.. ......+.+.||.++.....+
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-CcchhhHhhcCceEEEEEEEe
Confidence 9999 111 011111110 124667777777555 334444556889987665443
No 372
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.00 E-value=7.4e-06 Score=74.84 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=78.6
Q ss_pred hHHHHHHHHhcCCCCC--CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871 319 SAHLMAAVLARNPTIV--AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 394 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~--~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 394 (523)
|+.-|.+.+....-+. .+.+||||||++|+.+-.++.++ ..+|+++|+.+. ... ..+....
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~----~~~~~i~ 69 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL----QNVSFIQ 69 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-----TTEEBTT
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc----cceeeee
Confidence 5677888887776333 34899999999999999999987 569999999775 000 1111111
Q ss_pred eecCCCCcchhhhhh---cCCCccEEEEccccCC------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 395 LEWGNRDHIEAIKEE---NNEGFEVILGTDVSYI------------PEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 395 ldw~~~~~~~~~~~~---~~~~fD~Ii~~d~~y~------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
.|..+......+... ....||+|++ |+-.. .......+..+..+| ++||.+++-.
T Consensus 70 ~d~~~~~~~~~i~~~~~~~~~~~dlv~~-D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L---------~~gG~~v~K~ 139 (181)
T PF01728_consen 70 GDITNPENIKDIRKLLPESGEKFDLVLS-DMAPNVSGDRNIDEFISIRLILSQLLLALELL---------KPGGTFVIKV 139 (181)
T ss_dssp GGGEEEEHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHH---------CTTEEEEEEE
T ss_pred cccchhhHHHhhhhhccccccCcceecc-ccccCCCCchhhHHHHHHHHHHHHHHHHHhhh---------cCCCEEEEEe
Confidence 111111112222222 1268999997 54211 112223333444567 6799877755
Q ss_pred eecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871 460 IFRQVDEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 460 ~~r~~~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
..-... ..++..++. .|+...+..+
T Consensus 140 ~~~~~~-~~~~~~l~~-~F~~v~~~Kp 164 (181)
T PF01728_consen 140 FKGPEI-EELIYLLKR-CFSKVKIVKP 164 (181)
T ss_dssp SSSTTS-HHHHHHHHH-HHHHEEEEE-
T ss_pred ccCccH-HHHHHHHHh-CCeEEEEEEC
Confidence 442223 467777666 4665666554
No 373
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.00 E-value=1e-05 Score=74.92 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=63.7
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEE-eeccCCccCCCCCCCc
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFV-CDLISDDLSRQISPSS 146 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~-~d~~~~~~~~~~~~~~ 146 (523)
+...+.++|||||.+.|..+.+|+...| +.+++.||+++++.+.|+++.+.. ..++..+. +|..+. +. ....++
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~-~~~~~~ 132 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LS-RLLDGS 132 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HH-hccCCC
Confidence 3446789999999999999999999977 889999999999999999987533 34577777 476542 11 134689
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+||.
T Consensus 133 fDliFI 138 (219)
T COG4122 133 FDLVFI 138 (219)
T ss_pred ccEEEE
Confidence 999987
No 374
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.92 E-value=3.6e-05 Score=73.68 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
-.++.|||||||+|.+....++.+ ..+|++|+.| +|.+.|++..+.+ ..++..+.+-+++..+| ++.|+++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-----Ek~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-----EKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-----hhccEEE
Confidence 467899999999999998877775 4579999975 5888998865433 46889999999887443 5799999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 249 S 249 (517)
T KOG1500|consen 249 S 249 (517)
T ss_pred e
Confidence 9
No 375
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.91 E-value=3.3e-05 Score=66.89 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=70.8
Q ss_pred chhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCc
Q 009871 59 DRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137 (523)
Q Consensus 59 ~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 137 (523)
...|+.+.....+....+.-|||+|.|||.++..++++ .+...+++++.|++.+....++. +.++++.+|+.+++
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~l~ 107 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFDLR 107 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhhHH
Confidence 44566666655566567788999999999999999998 45678999999999999988865 44678999998765
Q ss_pred --cCCCCCCCceeEEEE
Q 009871 138 --LSRQISPSSIDIVTM 152 (523)
Q Consensus 138 --~~~~~~~~~fD~V~~ 152 (523)
+. .+.+..||.|+|
T Consensus 108 ~~l~-e~~gq~~D~viS 123 (194)
T COG3963 108 TTLG-EHKGQFFDSVIS 123 (194)
T ss_pred HHHh-hcCCCeeeeEEe
Confidence 33 356778999999
No 376
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.91 E-value=3.8e-05 Score=73.60 Aligned_cols=71 Identities=25% Similarity=0.440 Sum_probs=58.1
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
......+|||||+|+|.++..+++++|+.+++.+|+ |.+++.+++ ..+++++.+|+. . ++|. +|+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~----~~P~--~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-D----PLPV--ADVYL 163 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-T----CCSS--ESEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-h----hhcc--cccee
Confidence 335667899999999999999999999999999998 889998888 478999999998 4 4555 99998
Q ss_pred Eccc
Q 009871 152 MERL 155 (523)
Q Consensus 152 ~~~~ 155 (523)
+.++
T Consensus 164 l~~v 167 (241)
T PF00891_consen 164 LRHV 167 (241)
T ss_dssp EESS
T ss_pred eehh
Confidence 8444
No 377
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.88 E-value=4.2e-05 Score=70.86 Aligned_cols=113 Identities=14% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
+....|-|+|||-+.++. .. ...|+.+|+-+. +-+++.+|+.+. |+++++.|++++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~--------------~~~V~~cDm~~v----Pl~d~svDvaV~C 235 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV--------------NERVIACDMRNV----PLEDESVDVAVFC 235 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeeecC--------------CCceeeccccCC----cCccCcccEEEee
Confidence 567889999999999985 22 234999998432 235788999988 889999999988
Q ss_pred --------ccccccceeeecceEEecCCeEEE------eeCHHHHHHHHHhCCCcEEEEEeEeeeeeecccCccceeEEE
Q 009871 153 --------ERLTGKDQKISENFYVRGDGTRAF------YFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV 218 (523)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~r~~~ 218 (523)
..|.....+ +++++|.+.. |-+...+.+.+...||++...... +..|+
T Consensus 236 LSLMgtn~~df~kEa~R-----iLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~-------------n~~F~ 297 (325)
T KOG3045|consen 236 LSLMGTNLADFIKEANR-----ILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS-------------NKYFT 297 (325)
T ss_pred HhhhcccHHHHHHHHHH-----HhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh-------------cceEE
Confidence 344444444 6777887654 447778899999999997655332 13355
Q ss_pred EEEEEecCC
Q 009871 219 QAVFCSSGG 227 (523)
Q Consensus 219 ~~~~~~~~~ 227 (523)
-..|.|+..
T Consensus 298 lfefkK~~~ 306 (325)
T KOG3045|consen 298 LFEFKKTPK 306 (325)
T ss_pred EEEEecCCc
Confidence 556666654
No 378
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.88 E-value=4.8e-05 Score=78.91 Aligned_cols=72 Identities=29% Similarity=0.388 Sum_probs=53.1
Q ss_pred CCeEEEECCCccccHHHHHhhC----CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAY----PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~----~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
+..|||||||+|.+....++.+ ...+|+|||-|+.++...+++...+ ..+|+++++|+++..+ +.++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCceeE
Confidence 5789999999999987666553 2468999999999987776542222 4689999999998743 348999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|+|
T Consensus 262 IVS 264 (448)
T PF05185_consen 262 IVS 264 (448)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 379
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=2.1e-05 Score=71.39 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=86.2
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-- 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-- 152 (523)
....++|||||-|.....|..++ -.+++-+|.|-.|++.|+.... .......+++|-+.+ +|.+++||+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~L----df~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFL----DFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-CceEEEEEecchhcc----cccccchhhhhhhh
Confidence 45679999999999999998885 2369999999999999987532 234567888898888 688999999998
Q ss_pred -ccccc--cceeeecceEEecCCeEE--------------------------------EeeCHHHHHHHHHhCCCcEEEE
Q 009871 153 -ERLTG--KDQKISENFYVRGDGTRA--------------------------------FYFSNDFLTSLFKENGFDVEEL 197 (523)
Q Consensus 153 -~~~~~--~~~~~~~~~~~~~~g~~~--------------------------------~~~~~~~l~~ll~~~Gf~~~~~ 197 (523)
..+.. ++.-+.....++|||.++ .|....++-.+|..+||....+
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 11100 000000011344444432 1234567888999999998777
Q ss_pred EeEeeeeeec
Q 009871 198 GLCCKQVENR 207 (523)
Q Consensus 198 ~~~~~~~~~~ 207 (523)
....-++.+.
T Consensus 226 DtDEi~v~Yp 235 (325)
T KOG2940|consen 226 DTDEIVVGYP 235 (325)
T ss_pred cccceeecCc
Confidence 6655544443
No 380
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.86 E-value=7.9e-05 Score=71.33 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCC--CCCCCceE
Q 009871 314 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK--PPFLAKLI 391 (523)
Q Consensus 314 ~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~--~~~~~~v~ 391 (523)
+-.|--+.++-.|.. ++..+++||||-|+-.+-.-+.|...++++|+....++.|+++...-.. ....=.+.
T Consensus 102 fNNwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred hhHHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 446777777777763 6678999999999776666667888999999999999999876652111 00000122
Q ss_pred EEeeecCCCCcchhhhhhcCCCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh
Q 009871 392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 467 (523)
Q Consensus 392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~ 467 (523)
+...|-... .+..+.+..+.+||+|=+-=++++ .+...-+++.+.+.| +|||+||-+.+. .+
T Consensus 176 f~~~Dc~~~-~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~L---------kpGG~FIgTiPd----sd 241 (389)
T KOG1975|consen 176 FIAADCFKE-RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCL---------KPGGVFIGTIPD----SD 241 (389)
T ss_pred EEEeccchh-HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhc---------CCCcEEEEecCc----HH
Confidence 333332221 111111223445999987655544 456777888999999 789999876543 34
Q ss_pred HHHHHHHH
Q 009871 468 SMLSAATQ 475 (523)
Q Consensus 468 ~~~~~~~~ 475 (523)
.++..+++
T Consensus 242 ~Ii~rlr~ 249 (389)
T KOG1975|consen 242 VIIKRLRA 249 (389)
T ss_pred HHHHHHHh
Confidence 45555544
No 381
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.85 E-value=8.2e-05 Score=70.73 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=81.8
Q ss_pred CCCCCeEEEECCCccccHHHHHhhCCC--CEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
...+.+||||.||.|+..+-.++..|. ..|.-.|+|+..|+..++..+.. ..-++|.++|+.+.+--..+ +...+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l-~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL-DPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc-CCCCC
Confidence 357789999999999999999988775 78999999999999999876443 24459999998763211111 22356
Q ss_pred EEEE--------------------ccccccceeeec------------ceEEec--CC--eEEEeeCHHHHHHHHHhCCC
Q 009871 149 IVTM--------------------ERLTGKDQKISE------------NFYVRG--DG--TRAFYFSNDFLTSLFKENGF 192 (523)
Q Consensus 149 ~V~~--------------------~~~~~~~~~~~~------------~~~~~~--~g--~~~~~~~~~~l~~ll~~~Gf 192 (523)
+++. .....+++.+.- ...+.. +| -.+...+..|+.++++++||
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 6666 111222222210 000100 11 12233589999999999999
Q ss_pred cEEEEEe
Q 009871 193 DVEELGL 199 (523)
Q Consensus 193 ~~~~~~~ 199 (523)
+.+....
T Consensus 292 ~K~~q~I 298 (311)
T PF12147_consen 292 EKIDQRI 298 (311)
T ss_pred chhhhee
Confidence 9655543
No 382
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.84 E-value=0.00018 Score=66.71 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=89.5
Q ss_pred ccchhHHH--HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871 315 MLWESAHL--MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 392 (523)
Q Consensus 315 ~~W~~a~~--la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~ 392 (523)
.-||-..+ +.++|...+ ....|-|+|||-+-++. .-...|+..|+-+ .| .+|.+
T Consensus 161 ~kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------~~------~~V~~ 216 (325)
T KOG3045|consen 161 KKWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------VN------ERVIA 216 (325)
T ss_pred HhCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh----ccccceeeeeeec-----------CC------Cceee
Confidence 34655443 667776554 56689999999985433 3345799999842 11 22322
Q ss_pred EeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHHH
Q 009871 393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLS 471 (523)
Q Consensus 393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~~ 471 (523)
.|..+. ++.+++.|++|.+=.+ ...++..++..+.++| ++||.++++...-+ .+...|.+
T Consensus 217 --cDm~~v-------Pl~d~svDvaV~CLSL-Mgtn~~df~kEa~RiL---------k~gG~l~IAEv~SRf~dv~~f~r 277 (325)
T KOG3045|consen 217 --CDMRNV-------PLEDESVDVAVFCLSL-MGTNLADFIKEANRIL---------KPGGLLYIAEVKSRFSDVKGFVR 277 (325)
T ss_pred --ccccCC-------cCccCcccEEEeeHhh-hcccHHHHHHHHHHHh---------ccCceEEEEehhhhcccHHHHHH
Confidence 222221 4567899999976333 3456999999999999 78999999987644 45567999
Q ss_pred HHHHcCCEEEEEcCC
Q 009871 472 AATQCGFRLVDKWPS 486 (523)
Q Consensus 472 ~~~~~gf~~~~~~~~ 486 (523)
.+...||.+......
T Consensus 278 ~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 278 ALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHcCCeeeehhhh
Confidence 999999999887654
No 383
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.83 E-value=1.2e-05 Score=73.74 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCCeEEEECCCcc----HHHHHHHhc---CC---CEEEEEcCChHHHHHHHHHHHhc----CCC------------C---
Q 009871 335 AGKKVLELGCGCG----GICSMVAAG---SA---DLVVATDGDSIALDLLAQNVTAN----LKP------------P--- 385 (523)
Q Consensus 335 ~~~~VLElG~G~G----~l~~~~a~~---~~---~~V~~~D~~~~~l~~~~~n~~~n----~~~------------~--- 385 (523)
+.-+|.-.||+|| .+++++... .. -+|+|||+|+.+|+.|++-+-.. +++ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 3459999999999 334444441 12 38999999999999998532111 110 0
Q ss_pred -----CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 386 -----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 386 -----~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
-...|.+...+..+. ....+.||+|+|..|+.+ .+....+++.+.+.| +|||.+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~-------~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L---------~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP-------DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSL---------KPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGE---------EEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCC-------CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHc---------CCCCEEEEe
Confidence 013477777766651 123569999999998744 557788999999999 679999998
Q ss_pred Eee
Q 009871 459 HIF 461 (523)
Q Consensus 459 ~~~ 461 (523)
+..
T Consensus 175 ~sE 177 (196)
T PF01739_consen 175 HSE 177 (196)
T ss_dssp TT-
T ss_pred cCc
Confidence 655
No 384
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00055 Score=63.33 Aligned_cols=143 Identities=20% Similarity=0.172 Sum_probs=91.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE-Eeee
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT-KRLE 396 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~-~~ld 396 (523)
.++.-|...+....-..+|+.|||+|+-||+++-.+..+|+++|+++|..-.-+..-- +. ..++.+ ...+
T Consensus 62 RG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~------d~rV~~~E~tN 132 (245)
T COG1189 62 RGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RN------DPRVIVLERTN 132 (245)
T ss_pred cHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hc------CCcEEEEecCC
Confidence 5678889999888878899999999999999999999999999999998654333211 11 123322 2222
Q ss_pred cCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------
Q 009871 397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------- 461 (523)
Q Consensus 397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~--------------- 461 (523)
..... . ..+ .+..|+|++ |+-+ -.+..++..+..++ .+++.+++-..+
T Consensus 133 ~r~l~-~---~~~-~~~~d~~v~-DvSF--ISL~~iLp~l~~l~---------~~~~~~v~LvKPQFEagr~~v~kkGvv 195 (245)
T COG1189 133 VRYLT-P---EDF-TEKPDLIVI-DVSF--ISLKLILPALLLLL---------KDGGDLVLLVKPQFEAGREQVGKKGVV 195 (245)
T ss_pred hhhCC-H---HHc-ccCCCeEEE-Eeeh--hhHHHHHHHHHHhc---------CCCceEEEEecchhhhhhhhcCcCcee
Confidence 21111 0 012 237788887 4333 34667777777787 445555543332
Q ss_pred cCC-----ChhHHHHHHHHcCCEEEEEcCC
Q 009871 462 RQV-----DEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 462 r~~-----~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
|.. -...+.+.+.+.||.+..+..+
T Consensus 196 ~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 196 RDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred cCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 111 1134566777889999988764
No 385
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.3e-05 Score=67.33 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=70.0
Q ss_pred CCCCCeEEEECCCccHHHHHHHhc-CCC--EEEEEcCChHHHHHHHHHHHhcCCC------CCCCceEEEeeecCCCCcc
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAG-SAD--LVVATDGDSIALDLLAQNVTANLKP------PFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~-~~~--~V~~~D~~~~~l~~~~~n~~~n~~~------~~~~~v~~~~ldw~~~~~~ 403 (523)
+.+|.+.||+|+|||.++..++.. ++. .++++|.-+++++.+++|+..---. .....+.+...|-....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~-- 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY-- 157 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC--
Confidence 468999999999999998888754 322 3599999999999999999864321 01233444433332211
Q ss_pred hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
-+..+||.|.+. .....+.+.+-..| +++|.+++.-.
T Consensus 158 -----~e~a~YDaIhvG------Aaa~~~pq~l~dqL---------~~gGrllip~~ 194 (237)
T KOG1661|consen 158 -----AEQAPYDAIHVG------AAASELPQELLDQL---------KPGGRLLIPVG 194 (237)
T ss_pred -----CccCCcceEEEc------cCccccHHHHHHhh---------ccCCeEEEeec
Confidence 124589998865 34445555666666 56888777543
No 386
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.81 E-value=3.8e-05 Score=74.69 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=73.7
Q ss_pred CeEEEECCCcc----HHHHHHHhcC-----CCEEEEEcCChHHHHHHHHHHHhc----CCC-------------------
Q 009871 337 KKVLELGCGCG----GICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTAN----LKP------------------- 384 (523)
Q Consensus 337 ~~VLElG~G~G----~l~~~~a~~~-----~~~V~~~D~~~~~l~~~~~n~~~n----~~~------------------- 384 (523)
-+|.-.||+|| .++.++.... .-+|+|||+|+.+|+.|++-+-.. +++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 59999999999 3333333321 237999999999999998653110 000
Q ss_pred ----CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 385 ----PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 385 ----~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
.-...|.+...+..+... ...+.||+|+|..++.+ .+....+++.+.+.| +|||.+++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~------~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L---------~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW------AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLL---------KPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC------ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHh---------CCCcEEEEe
Confidence 011235555555443210 01468999999888754 467899999999999 789998887
Q ss_pred Eee
Q 009871 459 HIF 461 (523)
Q Consensus 459 ~~~ 461 (523)
+..
T Consensus 262 ~sE 264 (287)
T PRK10611 262 HSE 264 (287)
T ss_pred Ccc
Confidence 644
No 387
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.80 E-value=6.9e-05 Score=71.92 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=76.1
Q ss_pred CCeEEEECCCcc----HHHHHHHhcC------CCEEEEEcCChHHHHHHHHHHHh-----cCCCC----------C----
Q 009871 336 GKKVLELGCGCG----GICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA-----NLKPP----------F---- 386 (523)
Q Consensus 336 ~~~VLElG~G~G----~l~~~~a~~~------~~~V~~~D~~~~~l~~~~~n~~~-----n~~~~----------~---- 386 (523)
.-+|.-.||+|| .++.++...+ .-+|+|||+|..+|+.|+.-+-. -+++. .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 459999999999 3444444443 23899999999999999753322 11110 0
Q ss_pred ------CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccC--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 387 ------LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 387 ------~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
...|.+..++..+.. ...+.||+|+|-+|+- +.+.-..++..+...| +|||.+++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~-------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L---------~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDS-------PFLGKFDLIFCRNVLIYFDEETQERILRRFADSL---------KPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCc-------cccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHh---------CCCCEEEEc
Confidence 123555555444331 1356899999999863 3667889999999999 779999998
Q ss_pred Eeec
Q 009871 459 HIFR 462 (523)
Q Consensus 459 ~~~r 462 (523)
+...
T Consensus 241 ~sE~ 244 (268)
T COG1352 241 HSET 244 (268)
T ss_pred cCcc
Confidence 7653
No 388
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.80 E-value=1.9e-05 Score=75.13 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=61.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCC----CCCc
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI----SPSS 146 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~----~~~~ 146 (523)
.+.++|||||+++|..+..+++.. ++++|+.+|.+++..+.|+++.... ..+++++.+|+.+. ++.-. ..++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-HHHHHhccccCCc
Confidence 567899999999999999999874 5789999999999999999976433 47899999998652 11101 1368
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+||.
T Consensus 157 fD~iFi 162 (247)
T PLN02589 157 FDFIFV 162 (247)
T ss_pred ccEEEe
Confidence 999977
No 389
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=4e-05 Score=69.61 Aligned_cols=101 Identities=10% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871 336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 415 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD 415 (523)
...++|||||.|.+...+...+..+++.+|.|-.|++.++.. +.++ +.+..+ .++.+.+ ++...++|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~-------i~~~~~-v~DEE~L----df~ens~D 139 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPS-------IETSYF-VGDEEFL----DFKENSVD 139 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCc-------eEEEEE-ecchhcc----cccccchh
Confidence 347999999999999999998888999999999999888642 2222 222222 1222222 45678999
Q ss_pred EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
+||++--+++..+++..+..++..| +|.|.|+-+
T Consensus 140 LiisSlslHW~NdLPg~m~~ck~~l---------KPDg~Fias 173 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLPGSMIQCKLAL---------KPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhhccCchHHHHHHHhc---------CCCccchhH
Confidence 9999999999999999999999999 778888743
No 390
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.79 E-value=0.00012 Score=73.96 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=53.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871 315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 394 (523)
Q Consensus 315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 394 (523)
..+..+..|.+++.+.....++ +||||-||+|.+++.+|.. +.+|+|+|+++.+++.|++|+..|++. ++.+..
T Consensus 177 vN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~----n~~f~~ 250 (352)
T PF05958_consen 177 VNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID----NVEFIR 250 (352)
T ss_dssp SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE
T ss_pred CcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC----cceEEE
Confidence 3445566666666665544444 8999999999888887776 468999999999999999999999984 455554
Q ss_pred e
Q 009871 395 L 395 (523)
Q Consensus 395 l 395 (523)
.
T Consensus 251 ~ 251 (352)
T PF05958_consen 251 G 251 (352)
T ss_dssp -
T ss_pred e
Confidence 3
No 391
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.77 E-value=0.00011 Score=68.03 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=74.9
Q ss_pred EEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc-eeEEEE---
Q 009871 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS-IDIVTM--- 152 (523)
Q Consensus 79 iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~--- 152 (523)
|.||||-.|.+...|++++..-+++++|+++..++.|+++.... ..++++..+|-.. +++++. .|+|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-----~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-----VLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-----G--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-----ccCCCCCCCEEEEecC
Confidence 68999999999999999976667999999999999999976432 4689999999653 233443 788877
Q ss_pred -----ccccccceee---ecceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871 153 -----ERLTGKDQKI---SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 201 (523)
Q Consensus 153 -----~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~ 201 (523)
..++...... ...+.+.|. .....+++.|.+.||.++....+.
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~------~~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPN------THAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEES------S-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCC------CChHHHHHHHHHCCCEEEEeEEEe
Confidence 1111111110 012234433 257789999999999998776554
No 392
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.75 E-value=0.00028 Score=65.06 Aligned_cols=127 Identities=11% Similarity=0.046 Sum_probs=83.2
Q ss_pred eEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871 338 KVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 416 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~ 416 (523)
-+||||||.|.....+|...+ ..++|+|+....+..+...+...++ .++.+...|-... +.. -++++++|-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----~Nv~~~~~da~~~--l~~--~~~~~~v~~ 91 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----KNVRFLRGDAREL--LRR--LFPPGSVDR 91 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----SSEEEEES-CTTH--HHH--HSTTTSEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----cceEEEEccHHHH--Hhh--cccCCchhe
Confidence 799999999988888888754 4899999999999999888888765 4566655443321 211 123578998
Q ss_pred EEEc--cccCCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc--CCEEEE
Q 009871 417 ILGT--DVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC--GFRLVD 482 (523)
Q Consensus 417 Ii~~--d~~y~~------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~--gf~~~~ 482 (523)
|... |.-... =.-++++..+.++| +|||.+.+..-....- ....+.+.+. +|+...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L---------~~gG~l~~~TD~~~y~-~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVL---------KPGGELYFATDVEEYA-EWMLEQFEESHPGFENIE 157 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHE---------EEEEEEEEEES-HHHH-HHHHHHHHHHSTTEEEE-
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHc---------CCCCEEEEEeCCHHHH-HHHHHHHHhcCcCeEEcc
Confidence 8765 332211 15678999999999 6799998876442211 2345556663 777663
No 393
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.75 E-value=7.9e-05 Score=75.35 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=48.2
Q ss_pred hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS 135 (523)
Q Consensus 68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~ 135 (523)
.+++...++ .|||+-||+|.++..|++.+ .+|+|||+++.|++.|++++..+ -.+++|.++++.+
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 345553434 89999999999999999885 45999999999999999988654 3689999988754
No 394
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.75 E-value=3.5e-05 Score=78.42 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=57.9
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCC-CCceeEEEE
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS-PSSIDIVTM 152 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~fD~V~~ 152 (523)
+.+|||++||+|..+..++...+..+|+++|+++.+++.++++...+. .++++.++|+... +. .++||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-----l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-----LHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-----HhhcCCCCEEEE
Confidence 468999999999999999887654579999999999999999875432 4567889998653 11 457999977
No 395
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.75 E-value=6.3e-05 Score=65.71 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=49.3
Q ss_pred eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS 135 (523)
Q Consensus 78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~ 135 (523)
.+||||||.|..+..+++.++..+|+++|+++.+.+.++++...+ ..++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999988889999999999999999876433 2458888877764
No 396
>PLN02823 spermine synthase
Probab=97.74 E-value=7.8e-05 Score=74.37 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=62.0
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.+.+||.||+|.|..+..+++..+..+|+.||+++++++.|++.... ..++++++.+|.... + ...+++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-L--~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-L--EKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-H--hhCCCCcc
Confidence 567899999999999999998876556899999999999999987632 247899999998753 1 12356899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 179 vIi~ 182 (336)
T PLN02823 179 VIIG 182 (336)
T ss_pred EEEe
Confidence 9998
No 397
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.74 E-value=0.00051 Score=71.67 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
++|.+.+..+...+ .+|.+|||++||.|+=+..+|+.. ...|++.|+++.-++.+++|++.-++. ++.+...
T Consensus 98 ~sS~l~~~~L~~~~--~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~----nv~v~~~ 171 (470)
T PRK11933 98 ASSMLPVAALFADD--NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS----NVALTHF 171 (470)
T ss_pred HHHHHHHHHhccCC--CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeC
Confidence 34555555554333 478899999999999999888863 348999999999999999999997663 3444332
Q ss_pred ecCCCCcchhhhhhcCCCccEEEE----cc--ccCC-C--------C-------ChHHHHHHHHHHhhccCCCCCCCCCc
Q 009871 396 EWGNRDHIEAIKEENNEGFEVILG----TD--VSYI-P--------E-------AILPLFATAKELTASSNKSLREDQQP 453 (523)
Q Consensus 396 dw~~~~~~~~~~~~~~~~fD~Ii~----~d--~~y~-~--------~-------~~~~l~~~l~~ll~~~~~~~~~~~~g 453 (523)
|-.. + ....+..||.|+. +. ++.. + + .-..++..+.++| +|||
T Consensus 172 D~~~---~---~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L---------kpGG 236 (470)
T PRK11933 172 DGRV---F---GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL---------KPGG 236 (470)
T ss_pred chhh---h---hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc---------CCCc
Confidence 2111 1 1122457999993 21 1111 1 1 1255677777788 6799
Q ss_pred EEEEEEee
Q 009871 454 AFILCHIF 461 (523)
Q Consensus 454 ~~~l~~~~ 461 (523)
.++.+...
T Consensus 237 ~LVYSTCT 244 (470)
T PRK11933 237 TLVYSTCT 244 (470)
T ss_pred EEEEECCC
Confidence 88665443
No 398
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.73 E-value=0.00015 Score=70.86 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=71.2
Q ss_pred hhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CC
Q 009871 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR 140 (523)
Q Consensus 62 ~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~ 140 (523)
.+..+.-+.+...++..++|.=||.|.++..+++..++++|+|+|.++.+++.|+++......++.+++++..++.- ..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 46666666666677889999999999999999998766899999999999999998764434689999998875421 00
Q ss_pred CCCCCceeEEEE
Q 009871 141 QISPSSIDIVTM 152 (523)
Q Consensus 141 ~~~~~~fD~V~~ 152 (523)
....+++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 123457999998
No 399
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00011 Score=75.77 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=64.9
Q ss_pred hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCc
Q 009871 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (523)
Q Consensus 68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~ 146 (523)
.+++...++.++||+=||.|.+++.|+++. .+|+|+|+++.+++.|+++++.++ .|++|..+++++.-.. ......
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~-~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA-WWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh-ccccCC
Confidence 345555677899999999999999999774 559999999999999999986553 5699999999865211 112357
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
+|+|+.
T Consensus 363 ~d~Vvv 368 (432)
T COG2265 363 PDVVVV 368 (432)
T ss_pred CCEEEE
Confidence 899998
No 400
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00019 Score=73.13 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=80.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 398 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~ 398 (523)
++.+|-.++.++..+..++.+||+-||||.++ ++.+++.++|+++++++++++-|+.|+..|++++ .++.. +
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~ig-lala~~~~~ViGvEi~~~aV~dA~~nA~~NgisN----a~Fi~---g 438 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIG-LALARGVKRVIGVEISPDAVEDAEKNAQINGISN----ATFIV---G 438 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCcee-hhhhccccceeeeecChhhcchhhhcchhcCccc----eeeee---c
Confidence 56778888888877778899999999999554 4555667899999999999999999999999963 33332 2
Q ss_pred CCCc-chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 399 NRDH-IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 399 ~~~~-~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+++. +..+....-++-++|...|.-- ...+..+++.+...- .+.-.+|++-..
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~---------~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYK---------NPRRLVYVSCNP 492 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhcc---------CccceEEEEcCH
Confidence 2221 2111111112445444444332 345566666666554 345555555444
No 401
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.69 E-value=0.00068 Score=64.63 Aligned_cols=116 Identities=9% Similarity=0.012 Sum_probs=83.3
Q ss_pred CCCeEEEECCCccHHHHHHHhcC---CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 411 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~ 411 (523)
..-+||||.||.|-...-+.... +.+|+..|+++..++..+.-++.+++. ..+++...|-.+.+.+.. + .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~---~i~~f~~~dAfd~~~l~~---l-~ 207 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE---DIARFEQGDAFDRDSLAA---L-D 207 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc---cceEEEecCCCCHhHhhc---c-C
Confidence 44599999999997665555543 368999999999999999999999886 445777666555433332 2 3
Q ss_pred CCccEEEEccccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh
Q 009871 412 EGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE 466 (523)
Q Consensus 412 ~~fD~Ii~~d~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~ 466 (523)
..++++|.+-++-.. +.+...+.-+..++ .|+|.++.+..++.+..
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al---------~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARAL---------EPGGYLIYTGQPWHPQL 256 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHh---------CCCcEEEEcCCCCCcch
Confidence 478999988665332 34666777788888 67999988776544433
No 402
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.69 E-value=0.0002 Score=63.87 Aligned_cols=83 Identities=7% Similarity=-0.110 Sum_probs=60.8
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhh
Q 009871 362 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTA 441 (523)
Q Consensus 362 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~ 441 (523)
+++|+|+.||+.|+++....... ...++.+...|-.+. ++.+++||+|+++.++.+..+...+++.+.++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL- 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL- 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc-
Confidence 48999999999998766532211 112455555443321 345678999999998988889999999999999
Q ss_pred ccCCCCCCCCCcEEEEEEee
Q 009871 442 SSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 442 ~~~~~~~~~~~g~~~l~~~~ 461 (523)
+|||.+++....
T Consensus 72 --------kpGG~l~i~d~~ 83 (160)
T PLN02232 72 --------KPGSRVSILDFN 83 (160)
T ss_pred --------CcCeEEEEEECC
Confidence 779999877554
No 403
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.68 E-value=6.9e-05 Score=66.02 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=63.6
Q ss_pred CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871 337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 416 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~ 416 (523)
..+.|||+|+|.+ +++|+..+.+|++++.+|....+|.+|+..++. .++.+...|-.+- .-...|+
T Consensus 34 d~~~DLGaGsGiL-s~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~----~n~evv~gDA~~y---------~fe~ADv 99 (252)
T COG4076 34 DTFADLGAGSGIL-SVVAAHAAERVIAIEKDPKRARLAEENLHVPGD----VNWEVVVGDARDY---------DFENADV 99 (252)
T ss_pred hceeeccCCcchH-HHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC----cceEEEecccccc---------cccccce
Confidence 5799999999954 555666688999999999999999999877665 3555554433222 1135688
Q ss_pred EEEc--cccCCCCChHHHHHHHHHHh
Q 009871 417 ILGT--DVSYIPEAILPLFATAKELT 440 (523)
Q Consensus 417 Ii~~--d~~y~~~~~~~l~~~l~~ll 440 (523)
|+|- |...-.+...+.++.+-.+|
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFL 125 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFL 125 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHh
Confidence 8864 44444555666777777777
No 404
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.67 E-value=4.6e-05 Score=76.94 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.+++|||+=|=||..+.+.+..+ ..+||+||+|..+|+.|++|...++ .+..|+++|+.+.=-...-...+||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 48999999999999999988773 2279999999999999999876543 5689999998642000011245899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 296 l 296 (393)
T COG1092 296 L 296 (393)
T ss_pred E
Confidence 9
No 405
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.00018 Score=66.51 Aligned_cols=120 Identities=20% Similarity=0.124 Sum_probs=79.1
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc-eeEEEEc
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS-IDIVTME 153 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~~ 153 (523)
+.+++|||+|.|.-+.+|+=.+|+.+|+-+|...+-+...+.-... +-.+++++++-+++.. +... ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~-----~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG-----QEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc-----cccccCcEEEee
Confidence 6899999999999999999778999999999999887777664432 3367999999998651 1122 9999992
Q ss_pred cccccceeeec--ceEEecCCeEEEe-e-----CHHHHHHHHHhCCCcEEEEEeEe
Q 009871 154 RLTGKDQKISE--NFYVRGDGTRAFY-F-----SNDFLTSLFKENGFDVEELGLCC 201 (523)
Q Consensus 154 ~~~~~~~~~~~--~~~~~~~g~~~~~-~-----~~~~l~~ll~~~Gf~~~~~~~~~ 201 (523)
.+ .....+.+ .-+++.+|.+..+ + ...+........|+.+.++....
T Consensus 143 Av-a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 143 AV-ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred hc-cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEee
Confidence 22 11111100 0145555554321 1 23445666666778877665443
No 406
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.67 E-value=0.00046 Score=63.37 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=76.2
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHH----HHHHHHhccccCCCcEEEEEeeccCCccCCCCCCC
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR----AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 145 (523)
++..++.+||-+|..+|.+..+++.- .+...|+||++|+. .+..|+++ .|+--+..|+.....-..+ -+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~l-v~ 142 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRML-VE 142 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTT-S-
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhcc-cc
Confidence 34468899999999999999999998 66889999999995 45666665 6788889999753221122 24
Q ss_pred ceeEEEE-ccccccceeeec--ceEEecCCeEEEee---------CHH----HHHHHHHhCCCcEEEEE
Q 009871 146 SIDIVTM-ERLTGKDQKISE--NFYVRGDGTRAFYF---------SND----FLTSLFKENGFDVEELG 198 (523)
Q Consensus 146 ~fD~V~~-~~~~~~~~~~~~--~~~~~~~g~~~~~~---------~~~----~l~~ll~~~Gf~~~~~~ 198 (523)
.+|+|++ ..-......+.. ..+++++|.++... .++ +-.+.|++.||++.+..
T Consensus 143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence 8999999 000000011111 13678888776543 122 23556677889986553
No 407
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=5.9e-05 Score=76.83 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=59.5
Q ss_pred hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS 135 (523)
Q Consensus 63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~ 135 (523)
+...+.++...+.+..+||+.||||.++..+++... .|+||+++++++.-|+.++..+ ..|.+|+++-+++
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 445556677767889999999999999999998854 4999999999999999998655 4789999996654
No 408
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00076 Score=63.30 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=87.6
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCce
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI 147 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f 147 (523)
+...++.+|||-|.|+|.++.++++. .|..+++.+|+.+.-.+.|++..+. -+.++.+.+-|+....+. ..+..+
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~--~ks~~a 178 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL--IKSLKA 178 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc--cccccc
Confidence 44578999999999999999999998 7888999999999988888886543 357899999999876443 336789
Q ss_pred eEEEEccccccceeeec-ceEEecCCeEEEeeCH--HH---HHHHHHhCCCcEEEEE
Q 009871 148 DIVTMERLTGKDQKISE-NFYVRGDGTRAFYFSN--DF---LTSLFKENGFDVEELG 198 (523)
Q Consensus 148 D~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~--~~---l~~ll~~~Gf~~~~~~ 198 (523)
|+|+. ++..++..+.- .-.++.+|.+..-|++ |+ -.++|.+.||..++..
T Consensus 179 DaVFL-DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 179 DAVFL-DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred ceEEE-cCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 99998 11122211110 0034555655554543 33 4566778899865543
No 409
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.64 E-value=8.9e-05 Score=70.60 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=85.4
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC-------------CC-----------CC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP-------------PF-----------LA 388 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~-------------~~-----------~~ 388 (523)
..+|.++||+|||.-....+.|.....+|+++|..+.-++.+++=+...+.- .. ..
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3578899999999976655556667789999999998777666543322110 00 01
Q ss_pred ce-EEEeeecCCCCcchhhhhhcCCCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-
Q 009871 389 KL-ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR- 462 (523)
Q Consensus 389 ~v-~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r- 462 (523)
.| .+...|..+...+.....+ +.+||+|+++=|+-. .+.+...++.+.++| +|||.++++....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~-p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lL---------kpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVL-PPKFDCVISSFCLESACKDLDEYRRALRNISSLL---------KPGGHLILAGVLGS 203 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS--SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTE---------EEEEEEEEEEESS-
T ss_pred hhceEEEeeccCCCCCCccccC-ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHc---------CCCcEEEEEEEcCc
Confidence 12 2444455444333220011 236999998855532 345666666666777 6799999876653
Q ss_pred -------------CCChhHHHHHHHHcCCEEEEEc
Q 009871 463 -------------QVDEPSMLSAATQCGFRLVDKW 484 (523)
Q Consensus 463 -------------~~~~~~~~~~~~~~gf~~~~~~ 484 (523)
..+++.+.+.++++||.+.+.-
T Consensus 204 t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 204 TYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred eeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 2355677888999999998776
No 410
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.63 E-value=0.0002 Score=66.19 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=58.2
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcC-----C
Q 009871 310 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANL-----K 383 (523)
Q Consensus 310 ~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~-----~ 383 (523)
...|-..+.. +++.+. ...+.++...+|||||.|-+...+|.. +..+++|+++.+...+.++.+.+... .
T Consensus 21 ~~YGEi~~~~---~~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~ 96 (205)
T PF08123_consen 21 ETYGEISPEF---VSKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHY 96 (205)
T ss_dssp CCGGGCHHHH---HHHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred cceeecCHHH---HHHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 3445444433 333332 234567889999999999766666554 67789999999988877765443211 1
Q ss_pred CCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHH
Q 009871 384 PPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPL 432 (523)
Q Consensus 384 ~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l 432 (523)
.....++.+...|..+.+....+ -..-|+|+++...|.++....|
T Consensus 97 g~~~~~v~l~~gdfl~~~~~~~~----~s~AdvVf~Nn~~F~~~l~~~L 141 (205)
T PF08123_consen 97 GKRPGKVELIHGDFLDPDFVKDI----WSDADVVFVNNTCFDPDLNLAL 141 (205)
T ss_dssp TB---EEEEECS-TTTHHHHHHH----GHC-SEEEE--TTT-HHHHHHH
T ss_pred hcccccceeeccCccccHhHhhh----hcCCCEEEEeccccCHHHHHHH
Confidence 11124555555554433211111 1357999999988866544433
No 411
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0015 Score=65.24 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=76.4
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC----------------------------------------EEE
Q 009871 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD----------------------------------------LVV 362 (523)
Q Consensus 323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~----------------------------------------~V~ 362 (523)
||..|.......++..++|-=||+|-+++.+|..+.. .++
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 4555554445556789999999999888888776531 377
Q ss_pred EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-----CC----ChHHHH
Q 009871 363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PE----AILPLF 433 (523)
Q Consensus 363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~----~~~~l~ 433 (523)
++|+++.+++.|+.|++..++. +.|.+...|..+-.. + .+.+|+||++.. |. .. .+..+.
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~---d~I~f~~~d~~~l~~-----~--~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVG---DLIEFKQADATDLKE-----P--LEEYGVVISNPP-YGERLGSEALVAKLYREFG 327 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCC---ceEEEEEcchhhCCC-----C--CCcCCEEEeCCC-cchhcCChhhHHHHHHHHH
Confidence 9999999999999999999987 667777666544311 1 158999999754 43 21 344566
Q ss_pred HHHHHHh
Q 009871 434 ATAKELT 440 (523)
Q Consensus 434 ~~l~~ll 440 (523)
+++++.+
T Consensus 328 ~~lk~~~ 334 (381)
T COG0116 328 RTLKRLL 334 (381)
T ss_pred HHHHHHh
Confidence 6666666
No 412
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.59 E-value=4.1e-05 Score=68.47 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=89.9
Q ss_pred HHHHHHhcC-CCC-CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871 322 LMAAVLARN-PTI-VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 399 (523)
Q Consensus 322 ~la~~l~~~-~~~-~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~ 399 (523)
-+.++|... |.. ....++||||+|-|-++..++-. ..+|.+|++|..|...++.. + -+ -...++|.+
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~-----yn-Vl~~~ew~~ 165 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N-----YN-VLTEIEWLQ 165 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C-----Cc-eeeehhhhh
Confidence 345555544 222 13479999999999877766554 34699999999888777541 0 11 123456765
Q ss_pred CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------cC-
Q 009871 400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF---------------RQ- 463 (523)
Q Consensus 400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~---------------r~- 463 (523)
. +-+||+|.|-.++-...+.-.|++-+...| +|+ .|.++++-.. |+
T Consensus 166 t----------~~k~dli~clNlLDRc~~p~kLL~Di~~vl-~ps-------ngrvivaLVLP~~hYVE~N~~g~~~rPd 227 (288)
T KOG3987|consen 166 T----------DVKLDLILCLNLLDRCFDPFKLLEDIHLVL-APS-------NGRVIVALVLPYMHYVETNTSGLPLRPD 227 (288)
T ss_pred c----------CceeehHHHHHHHHhhcChHHHHHHHHHHh-ccC-------CCcEEEEEEecccceeecCCCCCcCCch
Confidence 4 348999999888777777888999999999 332 6666654332 11
Q ss_pred ---------CC--hhHHHHHHHHcCCEEEEEcC
Q 009871 464 ---------VD--EPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 464 ---------~~--~~~~~~~~~~~gf~~~~~~~ 485 (523)
.. ...|.+.++++||.++.-.+
T Consensus 228 n~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTr 260 (288)
T KOG3987|consen 228 NLLENNGRSFEEEVARFMELLRNCGYRVEAWTR 260 (288)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcCchhhhhhc
Confidence 11 13567888999999876554
No 413
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.59 E-value=0.00027 Score=61.71 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=48.7
Q ss_pred eEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871 338 KVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 400 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~ 400 (523)
.|||+|||.|..+..++..++. +|+++|.+|.+.+.+++|++.|+.. ++.+....+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~----~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP----NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEEeeeeCC
Confidence 4899999999888888877654 8999999999999999999998763 366666666554
No 414
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0014 Score=59.85 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=93.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC--EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD--LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 396 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~--~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld 396 (523)
|+.-|.+...++.-+.++.+|+||||-.|+.+-.++++... .|+++|+.|-- ....|.+.+.|
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d 93 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGD 93 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeee
Confidence 56677777777755557789999999999998888887433 59999998721 12347788888
Q ss_pred cCCCCcchhhhhh-cCCCccEEEEccccCC-----C-C------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 397 WGNRDHIEAIKEE-NNEGFEVILGTDVSYI-----P-E------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 397 w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~-----~-~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
....+..+.+... ....+|+|++ |.--. . + .....+......| +++|.+++-... .
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL---------~~~G~fv~K~fq-g 162 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVL---------KPGGSFVAKVFQ-G 162 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHee---------CCCCeEEEEEEe-C
Confidence 8888776666543 3445699995 32221 1 1 2223334444556 568888776544 5
Q ss_pred CChhHHHHHHHHcCCEEEEEcCC
Q 009871 464 VDEPSMLSAATQCGFRLVDKWPS 486 (523)
Q Consensus 464 ~~~~~~~~~~~~~gf~~~~~~~~ 486 (523)
.+.+.++..+++. |+..++..+
T Consensus 163 ~~~~~~l~~~~~~-F~~v~~~KP 184 (205)
T COG0293 163 EDFEDLLKALRRL-FRKVKIFKP 184 (205)
T ss_pred CCHHHHHHHHHHh-hceeEEecC
Confidence 5667788877664 776666554
No 415
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.55 E-value=0.00081 Score=62.25 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=76.7
Q ss_pred EEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-CccE
Q 009871 339 VLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-GFEV 416 (523)
Q Consensus 339 VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-~fD~ 416 (523)
|.|+||-=|.++..+++.+.. +|+++|+++.-++.|+.|+..+++. .++.+...| -+. .+.++ ..|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~---~~i~~rlgd-----GL~---~l~~~e~~d~ 69 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE---DRIEVRLGD-----GLE---VLKPGEDVDT 69 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T---TTEEEEE-S-----GGG---G--GGG---E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc---ccEEEEECC-----ccc---ccCCCCCCCE
Confidence 689999999999999999754 7999999999999999999998876 567665432 122 22233 3788
Q ss_pred EEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871 417 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 417 Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~ 483 (523)
|+.+-+-- ..+..++......+ .....++++... ....+...+.++||.+.+-
T Consensus 70 ivIAGMGG--~lI~~ILe~~~~~~---------~~~~~lILqP~~---~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 70 IVIAGMGG--ELIIEILEAGPEKL---------SSAKRLILQPNT---HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EEEEEE-H--HHHHHHHHHTGGGG---------TT--EEEEEESS----HHHHHHHHHHTTEEEEEE
T ss_pred EEEecCCH--HHHHHHHHhhHHHh---------ccCCeEEEeCCC---ChHHHHHHHHHCCCEEEEe
Confidence 88663321 22333333333333 224477776533 4567888899999998764
No 416
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.53 E-value=0.00039 Score=67.90 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=48.1
Q ss_pred cCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871 329 RNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397 (523)
Q Consensus 329 ~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw 397 (523)
+.....++..+||.+||.|+.+..++.... .+|+++|.|++|++.+++++.. ..++.+...+.
T Consensus 13 ~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f 77 (296)
T PRK00050 13 DALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNF 77 (296)
T ss_pred HhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCH
Confidence 333345678999999999999999998853 6899999999999999987643 13555554443
No 417
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.53 E-value=0.00051 Score=66.65 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccC
Q 009871 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS 139 (523)
Q Consensus 65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~ 139 (523)
+.+.+.+...++..|||||+|+|.++..|++.. .+|+++|+++.+++..+++.. ...+++++.+|+.+.+.+
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccH
Confidence 344444554678999999999999999999995 679999999999999998654 457899999999977543
No 418
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.53 E-value=0.0011 Score=63.62 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE- 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~- 412 (523)
+.++||=||-|.|+.+..+.+.. ..+|+++|+++.+++.+++-+..........++++..-| ...-++.. ..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D-----g~~~l~~~-~~~ 149 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD-----GRKFLKET-QEE 149 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST-----HHHHHHTS-SST
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh-----hHHHHHhc-cCC
Confidence 56899999999998888877764 569999999999999999866543322223566654322 11112222 34
Q ss_pred CccEEEEccccCC---C--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH---HHHHHHHcCCEEEE
Q 009871 413 GFEVILGTDVSYI---P--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS---MLSAATQCGFRLVD 482 (523)
Q Consensus 413 ~fD~Ii~~d~~y~---~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~---~~~~~~~~gf~~~~ 482 (523)
+||+|+. |+.-. . -.-.++++.+++.| +|+|.+++-.......... +...+++....+..
T Consensus 150 ~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L---------~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~ 217 (246)
T PF01564_consen 150 KYDVIIV-DLTDPDGPAPNLFTREFYQLCKRRL---------KPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKP 217 (246)
T ss_dssp -EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHE---------EEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEE
T ss_pred cccEEEE-eCCCCCCCcccccCHHHHHHHHhhc---------CCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEE
Confidence 8999997 33221 1 12468899999999 6689888765443444333 34455666554443
No 419
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00021 Score=64.46 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=60.8
Q ss_pred CCCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhcccc-----------CCCcEEEEEeeccCCccC
Q 009871 73 GAGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDF-----------TETRVSTFVCDLISDDLS 139 (523)
Q Consensus 73 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~-----------~~~~v~~~~~d~~~~~~~ 139 (523)
..++.+.||+|.|+|.++..+++. .++..++|||.-++.++.++++... ...++.++++|....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g--- 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG--- 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc---
Confidence 468899999999999999888766 3444459999999999999997632 125788999999876
Q ss_pred CCCCCCceeEEEE
Q 009871 140 RQISPSSIDIVTM 152 (523)
Q Consensus 140 ~~~~~~~fD~V~~ 152 (523)
.-+...||.|.+
T Consensus 157 -~~e~a~YDaIhv 168 (237)
T KOG1661|consen 157 -YAEQAPYDAIHV 168 (237)
T ss_pred -CCccCCcceEEE
Confidence 445678999987
No 420
>PHA01634 hypothetical protein
Probab=97.52 E-value=0.00048 Score=56.83 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 413 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~ 413 (523)
+++++|+|+|++.|.-++.++.+|+++|++.+.++...+.+++|++.|.+-. +. +....|... -++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~D---K~-v~~~eW~~~----------Y~~ 92 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICD---KA-VMKGEWNGE----------YED 92 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeee---ce-eeccccccc----------CCC
Confidence 5899999999999988889999999999999999999999999999986631 11 222367542 257
Q ss_pred ccEEEE
Q 009871 414 FEVILG 419 (523)
Q Consensus 414 fD~Ii~ 419 (523)
||+.+.
T Consensus 93 ~Di~~i 98 (156)
T PHA01634 93 VDIFVM 98 (156)
T ss_pred cceEEE
Confidence 887664
No 421
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.49 E-value=0.0022 Score=59.01 Aligned_cols=152 Identities=21% Similarity=0.267 Sum_probs=91.4
Q ss_pred ccccchhHH-HHHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCC
Q 009871 313 GLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPF 386 (523)
Q Consensus 313 G~~~W~~a~-~la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~ 386 (523)
+.++|+.-. -||..+.. +..+.+|.+||=||+.+|...+.++.- + ...|++++.++...+.+-.=++. .
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R---- 121 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-R---- 121 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-S----
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-C----
Confidence 577886543 25555543 345678999999999999777777765 4 44899999999665444321221 1
Q ss_pred CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh
Q 009871 387 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE 466 (523)
Q Consensus 387 ~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~ 466 (523)
.++--.. +++........+ -+..|+|++ |+- .++...-++..+..+| +++|.++++...|..+.
T Consensus 122 -~NIiPIl---~DAr~P~~Y~~l-v~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fL---------k~gG~~~i~iKa~siD~ 185 (229)
T PF01269_consen 122 -PNIIPIL---EDARHPEKYRML-VEMVDVIFQ-DVA-QPDQARIAALNARHFL---------KPGGHLIISIKARSIDS 185 (229)
T ss_dssp -TTEEEEE---S-TTSGGGGTTT-S--EEEEEE-E-S-STTHHHHHHHHHHHHE---------EEEEEEEEEEEHHHH-S
T ss_pred -Cceeeee---ccCCChHHhhcc-cccccEEEe-cCC-ChHHHHHHHHHHHhhc---------cCCcEEEEEEecCcccC
Confidence 1222221 222222222233 238899887 555 5677888899999999 66999999988875432
Q ss_pred ----hHH----HHHHHHcCCEEEEEcC
Q 009871 467 ----PSM----LSAATQCGFRLVDKWP 485 (523)
Q Consensus 467 ----~~~----~~~~~~~gf~~~~~~~ 485 (523)
..+ .+.+++.||++.+...
T Consensus 186 t~~p~~vf~~e~~~L~~~~~~~~e~i~ 212 (229)
T PF01269_consen 186 TADPEEVFAEEVKKLKEEGFKPLEQIT 212 (229)
T ss_dssp SSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCChheEec
Confidence 222 3456677999977643
No 422
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.48 E-value=0.00069 Score=63.58 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=66.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871 311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 390 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v 390 (523)
+.|..+-.-..++...+ ....+.++..|||+|-|||.++..+...+ ++|+++++||.|+..+++.++.-.. .+.+
T Consensus 35 d~GQHilkNp~v~~~I~-~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~---~~kL 109 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIV-EKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPK---SGKL 109 (315)
T ss_pred ccchhhhcCHHHHHHHH-hccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCc---ccee
Confidence 34444443344444443 34456688899999999998888888875 5799999999999999887765333 2567
Q ss_pred EEEeeecCCCCcchhhhhhcCCCccEEEEc
Q 009871 391 ITKRLEWGNRDHIEAIKEENNEGFEVILGT 420 (523)
Q Consensus 391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~ 420 (523)
++...|.-..+ ...||++|++
T Consensus 110 qV~~gD~lK~d---------~P~fd~cVsN 130 (315)
T KOG0820|consen 110 QVLHGDFLKTD---------LPRFDGCVSN 130 (315)
T ss_pred eEEecccccCC---------Ccccceeecc
Confidence 77766665542 2378888864
No 423
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.46 E-value=0.0012 Score=60.09 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=77.7
Q ss_pred eEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871 338 KVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 416 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~ 416 (523)
+++|+|+|.|.-|+.+|-..+ .+|+++|....=+..++.-+..=++ .++.+...+..+ .....+||+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~--------~~~~~~fd~ 118 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----SNVEVINGRAEE--------PEYRESFDV 118 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--------TTTTT-EEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----CCEEEEEeeecc--------cccCCCccE
Confidence 799999999955555555444 4899999998777777665555444 346665444333 123579999
Q ss_pred EEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hHHHHHHHHcCCEEEEEcC
Q 009871 417 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 417 Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~~~~~~~~~gf~~~~~~~ 485 (523)
|++--+ ..+..++..+..++ +++|.+++.-..+..++ ......+...|.+...+..
T Consensus 119 v~aRAv----~~l~~l~~~~~~~l---------~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 119 VTARAV----APLDKLLELARPLL---------KPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp EEEESS----SSHHHHHHHHGGGE---------EEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred EEeehh----cCHHHHHHHHHHhc---------CCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence 998743 45788888888888 55777666533322111 2445556677877776643
No 424
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.45 E-value=0.00025 Score=73.88 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=61.7
Q ss_pred cCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 72 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.+.++.+|||++||+|.=+.++++.. ....|+++|+++..++..+++.... ..++...+.|...+. ...++.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~---~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG---AALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh---hhchhhcCe
Confidence 44678999999999999999999984 3468999999999999999877543 356778888877541 122457999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|++
T Consensus 187 ILv 189 (470)
T PRK11933 187 ILL 189 (470)
T ss_pred EEE
Confidence 997
No 425
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.45 E-value=0.0014 Score=62.42 Aligned_cols=155 Identities=18% Similarity=0.302 Sum_probs=83.3
Q ss_pred hHHHHHHHHhccccccc--chhhhHHHHhhhhc--CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHH
Q 009871 42 KKYWDLFYKRHQDRFFK--DRHYLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVM 116 (523)
Q Consensus 42 ~~~Wd~~y~~~~~~f~~--~~~~l~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~ 116 (523)
..|-+.+|........+ -..+..+.+.+.+. ...+.++||||||+-..-..-+.. +. .|+..|+++.-++..+
T Consensus 19 ~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~ 96 (256)
T PF01234_consen 19 RAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELE 96 (256)
T ss_dssp HHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHH
T ss_pred HHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHH
Confidence 45666677543222210 01223333333333 134678999999996664333323 33 4999999999887655
Q ss_pred hcccc----------------CC-------------CcE-EEEEeeccCCccCCC-C-CCCceeEEEE------------
Q 009871 117 THKDF----------------TE-------------TRV-STFVCDLISDDLSRQ-I-SPSSIDIVTM------------ 152 (523)
Q Consensus 117 ~~~~~----------------~~-------------~~v-~~~~~d~~~~~~~~~-~-~~~~fD~V~~------------ 152 (523)
+..+. .+ ..| ..+.+|+.+.+.-.+ . -+.+||+|++
T Consensus 97 kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~ 176 (256)
T PF01234_consen 97 KWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLD 176 (256)
T ss_dssp HHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHH
T ss_pred HHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHH
Confidence 52210 00 113 367899987642111 0 1236999999
Q ss_pred ---------ccccccceeeec------ceEEecCCeEE-EeeCHHHHHHHHHhCCCcEEEEE
Q 009871 153 ---------ERLTGKDQKISE------NFYVRGDGTRA-FYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 153 ---------~~~~~~~~~~~~------~~~~~~~g~~~-~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
.+++++++.+.- .+|.-++..+. ...+.+.+++.++++||.+....
T Consensus 177 ~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 177 EYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 455566666542 33444444332 34589999999999999988776
No 426
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00021 Score=67.66 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=67.9
Q ss_pred hHHHHHHHHhcccccccchhhhHHHHhhhh-cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871 42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYF-SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120 (523)
Q Consensus 42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~ 120 (523)
++|-...|..-...|...+.-......+++ ..+.+..++|+|||.|..+ ..+|.+.++|+|++...+..|++...
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~~ 86 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSGG 86 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCCC
Confidence 345445565544444444333322222222 2245889999999999986 33578889999999999999887531
Q ss_pred cCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.....+|+.++ |+++.+||.+++
T Consensus 87 -----~~~~~ad~l~~----p~~~~s~d~~ls 109 (293)
T KOG1331|consen 87 -----DNVCRADALKL----PFREESFDAALS 109 (293)
T ss_pred -----ceeehhhhhcC----CCCCCccccchh
Confidence 15778899888 889999999988
No 427
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.00096 Score=61.34 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=76.6
Q ss_pred CCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hh
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EE 409 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~ 409 (523)
....+++||||.=||.-++..|.. -..+|+++|+++...+...+-++..+.. ++|++....=- +.+.++. ..
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~---~KI~~i~g~a~--esLd~l~~~~ 145 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD---HKITFIEGPAL--ESLDELLADG 145 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc---ceeeeeecchh--hhHHHHHhcC
Confidence 346789999999998333333333 2458999999999999998888887776 56666543221 1232222 23
Q ss_pred cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871 410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 459 (523)
Q Consensus 410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~ 459 (523)
..+.||+++.- .+..........+-+|+ ++||++++-.
T Consensus 146 ~~~tfDfaFvD---adK~nY~~y~e~~l~Ll---------r~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVD---ADKDNYSNYYERLLRLL---------RVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEc---cchHHHHHHHHHHHhhc---------ccccEEEEec
Confidence 56799999986 56666668888888899 6688887644
No 428
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0022 Score=60.32 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
++....+..+|.+|||-|+|+|.++.+++..- ..+++-.|....-.+.|++-.+..++. ..+.+..-|.......
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~---~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG---DNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC---cceEEEEeecccCCcc
Confidence 34444567799999999999999988887762 348999999887778888888887765 5666666555543211
Q ss_pred hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871 404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~ 483 (523)
. ....+|.|+. |+.--...++ .+...| +.+|.-++|+.+--...+.-.+.++++||.-.+.
T Consensus 173 ~-----ks~~aDaVFL-DlPaPw~AiP----ha~~~l---------k~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 173 I-----KSLKADAVFL-DLPAPWEAIP----HAAKIL---------KDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred c-----cccccceEEE-cCCChhhhhh----hhHHHh---------hhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence 1 1246777765 4433333333 344466 2345455555443222344567778889876554
No 429
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0011 Score=60.10 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=88.9
Q ss_pred cccchhHHH--HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871 314 LMLWESAHL--MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 391 (523)
Q Consensus 314 ~~~W~~a~~--la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~ 391 (523)
+..|+.-+. +|+.+. .+|.+||++|-|.|.+...+-+..+.+=+.++..|.+++.++.+.-. ...+|.
T Consensus 83 Mm~WEtpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-----ek~nVi 152 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-----EKENVI 152 (271)
T ss_pred hhhhhhHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-----cccceE
Confidence 567876554 555554 47889999999999666666556677778899999999999876543 235677
Q ss_pred EEeeecCCCCcchhhhhhcCCCccEEEEcccc-CCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVS-YIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+....|.+.- ..++++.||-|+- |.. -.-+.+..+.+.+-+|| +|+|++=.+...
T Consensus 153 il~g~WeDvl-----~~L~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLL---------kP~gv~SyfNg~ 208 (271)
T KOG1709|consen 153 ILEGRWEDVL-----NTLPDKHFDGIYY-DTYSELYEDLRHFHQHVVRLL---------KPEGVFSYFNGL 208 (271)
T ss_pred EEecchHhhh-----ccccccCcceeEe-echhhHHHHHHHHHHHHhhhc---------CCCceEEEecCc
Confidence 8888998752 2456788999986 333 23456777888899999 779987665433
No 430
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.40 E-value=0.00031 Score=61.27 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCCCeEEEECCCccccHHHHHh-----hCCCCEEEEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCC
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIA-----AYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~ 144 (523)
.+...|+|+|||.|.++..|+. . ++.+|+|||.++..++.|.++.+.. ..++.+..+++... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 97 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE-----SSS 97 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh-----ccc
Confidence 5678999999999999999998 4 6889999999999999998865432 14455666555432 113
Q ss_pred CceeEEEE
Q 009871 145 SSIDIVTM 152 (523)
Q Consensus 145 ~~fD~V~~ 152 (523)
...++++.
T Consensus 98 ~~~~~~vg 105 (141)
T PF13679_consen 98 DPPDILVG 105 (141)
T ss_pred CCCeEEEE
Confidence 45566655
No 431
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.39 E-value=0.00011 Score=66.45 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=52.1
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCC
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISD 136 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~ 136 (523)
....|+|.-||.|..+..++.+++. |++||++|.-|..|+.+++. -+.++.|+++|+.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 5678999999999999999999655 99999999999999998853 246999999999754
No 432
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.39 E-value=0.00032 Score=68.32 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=52.0
Q ss_pred CCCeEEEECCCccccH----HHHHhhCC----CCEEEEEeCCHHHHHHHHhcc-c----------------------cC-
Q 009871 75 GRKDVLEVGCGAGNTI----FPLIAAYP----DVFVYACDFSPRAVNLVMTHK-D----------------------FT- 122 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~----~~l~~~~~----~~~v~gvD~S~~~l~~a~~~~-~----------------------~~- 122 (523)
..-+|+-.||+||--. ..+.+..+ +.+|+|+|+|+.+|+.|++-. . ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3479999999999754 33334321 478999999999999999731 0 00
Q ss_pred --------CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 123 --------ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 123 --------~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
...|.|.+.|+.+.++ .+.+.||+|+|
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~---~~~~~fD~I~c 229 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQW---AVPGPFDAIFC 229 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCC---ccCCCcceeeH
Confidence 1356788888875421 12578999999
No 433
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0029 Score=61.46 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=72.4
Q ss_pred CeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871 337 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 415 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD 415 (523)
++||-||-|.|+....+++.. ..+++++|+++.+++.+++-+..-.......++.+..-|- .+-++.. ..+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-----~~~v~~~-~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-----VEFLRDC-EEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-----HHHHHhC-CCcCC
Confidence 699999999999888888875 5699999999999999987554322111135565543321 1112222 34899
Q ss_pred EEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871 416 VILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILC 458 (523)
Q Consensus 416 ~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~ 458 (523)
+||.- +.-... .-..+.+.+++.| +++|.++.-
T Consensus 152 vIi~D-~tdp~gp~~~Lft~eFy~~~~~~L---------~~~Gi~v~q 189 (282)
T COG0421 152 VIIVD-STDPVGPAEALFTEEFYEGCRRAL---------KEDGIFVAQ 189 (282)
T ss_pred EEEEc-CCCCCCcccccCCHHHHHHHHHhc---------CCCcEEEEe
Confidence 99973 322211 2378999999999 668888775
No 434
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.36 E-value=0.00041 Score=67.56 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=73.8
Q ss_pred HHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCCC--cEEEEEeeccCCccCC
Q 009871 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTET--RVSTFVCDLISDDLSR 140 (523)
Q Consensus 64 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~ 140 (523)
..++..-++.-.+.+|||+|||+|..+..+.+.++. .+++++|.|+.|++.++........ ...+ ..+.... ..
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~-~~- 98 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRD-FL- 98 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcc-cc-
Confidence 334433344456789999999999988877776653 4699999999999999885432211 1111 1111110 00
Q ss_pred CCCCCceeEEEE----ccccc---------cceeeecceEEecCCeEEEeeCHHHHHHHHHhCCCcEE
Q 009871 141 QISPSSIDIVTM----ERLTG---------KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVE 195 (523)
Q Consensus 141 ~~~~~~fD~V~~----~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~ 195 (523)
++ ...|+|++ ..+.. -+....+..++-..|+..-|-...++++.|.+.|+.++
T Consensus 99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 12 22399999 11100 00111223345556666655567778888877777654
No 435
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.35 E-value=0.0023 Score=61.38 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=39.3
Q ss_pred hHHHHhhhhc----CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHH
Q 009871 63 LDKEWGRYFS----GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114 (523)
Q Consensus 63 l~~~~~~~~~----~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~ 114 (523)
+...+.++.+ .....+||--|||.|+++..++.+ +..+.|.|+|--|+-.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~ 93 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLA 93 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHH
Confidence 4444444444 245678999999999999999999 6779999999999744
No 436
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.35 E-value=0.0029 Score=59.47 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=75.4
Q ss_pred CeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-Cc
Q 009871 337 KKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-GF 414 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-~f 414 (523)
..+||||||.|.....+|+..+. .++|+|+....+..|...+...++. ++.+...| . ..-+..+.++ +.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~~D---A--~~~l~~~~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLCGD---A--VEVLDYLIPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEcCC---H--HHHHHhcCCCCCe
Confidence 47999999999888888888654 8999999998988888888776652 34443322 1 1112233344 88
Q ss_pred cEEEEc--cccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 415 EVILGT--DVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 415 D~Ii~~--d~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
|-|..+ |.-.-.. ..+.+++.+.+.| ++||.+.+..-.
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~L---------k~gG~l~~aTD~ 166 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKL---------KPGGVLHFATDN 166 (227)
T ss_pred eEEEEECCCCCCCccccccccCCHHHHHHHHHHc---------cCCCEEEEEecC
Confidence 888765 3322221 4688999999999 789999998644
No 437
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.35 E-value=0.0022 Score=62.49 Aligned_cols=126 Identities=16% Similarity=0.099 Sum_probs=68.7
Q ss_pred CCCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 409 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~ 409 (523)
.+..++|||+|||+| .+..++.. ...+++++|.|+.|++.++.-+.. ..... . ..|... ..... .
T Consensus 31 ~f~P~~vLD~GsGpG-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~--~-----~~~~~~-~~~~~--~ 98 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPG-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNR--N-----AEWRRV-LYRDF--L 98 (274)
T ss_pred CCCCceEEEecCChH-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccc--c-----chhhhh-hhccc--c
Confidence 457789999999998 55554443 245899999999999988774433 22110 0 011111 00000 1
Q ss_pred cCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEE
Q 009871 410 NNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLV 481 (523)
Q Consensus 410 ~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~ 481 (523)
+....|+|+++-++-.-.. ...+++.+...+ .+.+++....-..+- ....+.+.+.|+.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~-----------~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKT-----------APVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhc-----------cCcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 1124499999988766444 334444444434 336666544322221 123344455666664
No 438
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.35 E-value=0.0014 Score=70.35 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCeEEEECCCccHHHHHHHhcC---------CCEEEEEcCChHHHHHHHHHHHhcC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS---------ADLVVATDGDSIALDLLAQNVTANL 382 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~---------~~~V~~~D~~~~~l~~~~~n~~~n~ 382 (523)
.+.+|||.|||+|.+...++... ...+++.|+++.++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 45699999999998877776532 1479999999999999999987654
No 439
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.34 E-value=0.00078 Score=63.17 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=57.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+...+|+|||||.--++.++....++..++|+||+..+++...+.....+...++...|+... .+....|+.+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-----~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-----PPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-----HTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-----CCCCCcchhhH
Confidence 458899999999999999999888889999999999999999886655557788888888754 34667999988
No 440
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00097 Score=63.44 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=61.4
Q ss_pred HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 403 (523)
Q Consensus 324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~ 403 (523)
.+.+....+..++.+|||||+|.|.++..+++++. +|+++++|+.+++.+++.... ..++.+...|.-..+..
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcch
Confidence 45555555556788999999999999999999865 599999999999999876541 14555554444332110
Q ss_pred hhhhhhcCCCccEEEEccccCCC
Q 009871 404 EAIKEENNEGFEVILGTDVSYIP 426 (523)
Q Consensus 404 ~~~~~~~~~~fD~Ii~~d~~y~~ 426 (523)
.+ ..++.|+++ +-|+.
T Consensus 92 ----~l--~~~~~vVaN-lPY~I 107 (259)
T COG0030 92 ----SL--AQPYKVVAN-LPYNI 107 (259)
T ss_pred ----hh--cCCCEEEEc-CCCcc
Confidence 00 067888886 55553
No 441
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00044 Score=67.09 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=61.4
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-----CCcEEEEEeeccCCccCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+..++||-||-|.|..+..+++..+-.+++.||++++.++.|++..... .++++.+..|..+. -... .++||
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~--v~~~-~~~fD 151 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF--LRDC-EEKFD 151 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH--HHhC-CCcCC
Confidence 4457999999999999999999977678999999999999999965321 47899999998653 1111 23899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|++
T Consensus 152 vIi~ 155 (282)
T COG0421 152 VIIV 155 (282)
T ss_pred EEEE
Confidence 9999
No 442
>PRK00536 speE spermidine synthase; Provisional
Probab=97.30 E-value=0.0012 Score=63.41 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=74.0
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCC
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~ 144 (523)
+...+.+++||=||-|-|..+..++++- .+|+-||+++++++.|++... ...++++.+. .+.+ ...
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~------~~~ 137 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD------LDI 137 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh------ccC
Confidence 4455788999999999999999999883 389999999999999999542 2457777765 2211 124
Q ss_pred CceeEEEE-----ccccccceeeecceEEecCCeEEE-----eeCHHH---HHHHHHhCCCcEE
Q 009871 145 SSIDIVTM-----ERLTGKDQKISENFYVRGDGTRAF-----YFSNDF---LTSLFKENGFDVE 195 (523)
Q Consensus 145 ~~fD~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~---l~~ll~~~Gf~~~ 195 (523)
++||+|++ ..|.+...+ .++++|.++. ++..+. +.+.+++ .|..+
T Consensus 138 ~~fDVIIvDs~~~~~fy~~~~~-----~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 138 KKYDLIICLQEPDIHKIDGLKR-----MLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred CcCCEEEEcCCCChHHHHHHHH-----hcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCce
Confidence 68999999 222222222 4566665543 234444 4444554 57643
No 443
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.29 E-value=0.00055 Score=65.87 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=45.3
Q ss_pred CCCeEEEECCCccccHHHHHh-h-CCCCEEEEEeCCHHHHHHHHhccc---cCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIA-A-YPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTFVCDLISDDLSRQISPSSIDI 149 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~-~-~~~~~v~gvD~S~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 149 (523)
.+++|+=||||.=-++..+.. + .++..|+++|+++++++.+++-.. ....+++|+.+|+.+. ...-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~----~~dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV----TYDLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-----GG----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc----ccccccCCE
Confidence 346999999998777655544 3 567889999999999999988543 1257899999999755 223357999
Q ss_pred EEE
Q 009871 150 VTM 152 (523)
Q Consensus 150 V~~ 152 (523)
|+.
T Consensus 196 V~l 198 (276)
T PF03059_consen 196 VFL 198 (276)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 444
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.27 E-value=0.00039 Score=69.39 Aligned_cols=89 Identities=15% Similarity=0.310 Sum_probs=59.5
Q ss_pred hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhh-------CCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEE
Q 009871 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-------YPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFV 130 (523)
Q Consensus 61 ~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~ 130 (523)
..+.+.+.+++...++.+|+|-+||+|.++..+.+. .+..+++|+|+++.++..|+-+.... ........
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 344445556666667778999999999999888774 35788999999999999998764222 23345778
Q ss_pred eeccCCccCCCC-CCCceeEEEE
Q 009871 131 CDLISDDLSRQI-SPSSIDIVTM 152 (523)
Q Consensus 131 ~d~~~~~~~~~~-~~~~fD~V~~ 152 (523)
+|....+ .. ....||+|++
T Consensus 112 ~d~l~~~---~~~~~~~~D~ii~ 131 (311)
T PF02384_consen 112 GDSLEND---KFIKNQKFDVIIG 131 (311)
T ss_dssp S-TTTSH---SCTST--EEEEEE
T ss_pred ccccccc---ccccccccccccC
Confidence 8876442 11 2578999999
No 445
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.24 E-value=0.00092 Score=61.45 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCCeEEEECCCccccH----HHHHhh----CC-CCEEEEEeCCHHHHHHHHhcc------c-------------c-C---
Q 009871 75 GRKDVLEVGCGAGNTI----FPLIAA----YP-DVFVYACDFSPRAVNLVMTHK------D-------------F-T--- 122 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~----~~l~~~----~~-~~~v~gvD~S~~~l~~a~~~~------~-------------~-~--- 122 (523)
..-+|+-+||++|.-. ..+.+. .+ ..+|+|+|+|+.+|+.|++-. . . .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5678999999999753 334441 11 479999999999999998721 0 0 0
Q ss_pred ------CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 123 ------ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 123 ------~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
...++|.+.|+.+. +.+.+.||+|+|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~----~~~~~~fD~I~C 142 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP----DPPFGRFDLIFC 142 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S----------EEEEEE
T ss_pred eEChHHcCceEEEecccCCC----CcccCCccEEEe
Confidence 14689999999872 335678999999
No 446
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.23 E-value=0.00079 Score=60.34 Aligned_cols=61 Identities=15% Similarity=0.419 Sum_probs=46.5
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--------CCCcEEEEEeeccC
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--------TETRVSTFVCDLIS 135 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--------~~~~v~~~~~d~~~ 135 (523)
....+.|||||.|.++..|+..+|+--+.|++|-.+.-+..+++... ...++.....+...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 44679999999999999999999999999999988877777665321 12455666655543
No 447
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.23 E-value=0.00089 Score=65.76 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=50.7
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.++.++|||||++|..+..|+++ +.+|+|||.++ |-.... ..++|.....|..... | +.+.+|.|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~~---p-~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKFR---P-PRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cCHhhh-----CCCCEEEEeccCcccC---C-CCCCCCEEEE
Confidence 57889999999999999999998 56899999665 222222 2367888888876541 1 2668999999
No 448
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.21 E-value=0.0004 Score=67.43 Aligned_cols=117 Identities=19% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
..+++|||+=|=||.++...+..+ ..+|++||.|..+++.|+++...+ ..+++|++.|+.+. +..--..++||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~-l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF-LKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH-HHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HHHHhcCCCCCEE
Confidence 457899999999999998877653 347999999999999999987544 35789999998642 1100124689999
Q ss_pred EE--ccccccceeeec---------ceEEecCCeEEEe-----eCHHHHHHHHHhCCC
Q 009871 151 TM--ERLTGKDQKISE---------NFYVRGDGTRAFY-----FSNDFLTSLFKENGF 192 (523)
Q Consensus 151 ~~--~~~~~~~~~~~~---------~~~~~~~g~~~~~-----~~~~~l~~ll~~~Gf 192 (523)
++ ..|.+....+.. .-.++++|.++.. .+.+.+.+.+.+++-
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~ 257 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR 257 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence 99 333111111110 1135667776543 366777777766553
No 449
>PRK10742 putative methyltransferase; Provisional
Probab=97.19 E-value=0.0019 Score=60.88 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=61.3
Q ss_pred CCCC--eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-----CCceEEEeeecCCCCcchhh
Q 009871 334 VAGK--KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-----LAKLITKRLEWGNRDHIEAI 406 (523)
Q Consensus 334 ~~~~--~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-----~~~v~~~~ldw~~~~~~~~~ 406 (523)
.+|. +|||+=+|+|..+..++++|+. |+++|.++.+..+++.|++.-..... ..++++... +...-+
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~-----da~~~L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA-----SSLTAL 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC-----cHHHHH
Confidence 3555 8999999999999999999876 99999999999999999987321100 023333222 222222
Q ss_pred hhhcCCCccEEEEccccCCCCChHH
Q 009871 407 KEENNEGFEVILGTDVSYIPEAILP 431 (523)
Q Consensus 407 ~~~~~~~fD~Ii~~d~~y~~~~~~~ 431 (523)
... ..+||+|.. |..|-...-..
T Consensus 159 ~~~-~~~fDVVYl-DPMfp~~~ksa 181 (250)
T PRK10742 159 TDI-TPRPQVVYL-DPMFPHKQKSA 181 (250)
T ss_pred hhC-CCCCcEEEE-CCCCCCCcccc
Confidence 232 347999997 77777544333
No 450
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.19 E-value=0.0094 Score=57.29 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC---------------------------
Q 009871 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF--------------------------- 386 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~--------------------------- 386 (523)
....+||=-|||.|.++--+|.+|. .|.+.|.|--|+=. .|.-.|.....
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3456999999999999999999976 69999999877533 34444432100
Q ss_pred -----------CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871 387 -----------LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF 455 (523)
Q Consensus 387 -----------~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~ 455 (523)
...+.....|+.+. -. .+...+.||+|+.+=-+=-.+++-..++++.++| +|||..
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~---y~-~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL---------kpgG~W 198 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEV---YG-PDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL---------KPGGYW 198 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEe---cC-CcccCCcccEEEEEEEeechHHHHHHHHHHHHHh---------ccCCEE
Confidence 00111111111111 00 0001368999998832333567888999999999 678866
Q ss_pred EEEEee----c----------CCChhHHHHHHHHcCCEEEEE
Q 009871 456 ILCHIF----R----------QVDEPSMLSAATQCGFRLVDK 483 (523)
Q Consensus 456 ~l~~~~----r----------~~~~~~~~~~~~~~gf~~~~~ 483 (523)
|-..+. . .++.+++...+++.||++.+.
T Consensus 199 IN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 199 INFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred EecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 633222 1 123478899999999999764
No 451
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.17 E-value=0.0015 Score=64.12 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=55.5
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
..+|.+||||||++|+.+-.++.+|+ +|+++|..+ |- .++.. ..+|.....+=.... + ...
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~------~~~V~h~~~d~fr~~------p-~~~ 269 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD------TGQVEHLRADGFKFR------P-PRK 269 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC------CCCEEEEeccCcccC------C-CCC
Confidence 46899999999999999999999987 899999754 21 22222 134444332211110 0 145
Q ss_pred CccEEEEccccCCCCChHHHHHHHHHHh
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKELT 440 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll 440 (523)
.+|+|++ |+.-.+ ..+.+.+.++|
T Consensus 270 ~vDwvVc-Dmve~P---~rva~lm~~Wl 293 (357)
T PRK11760 270 NVDWLVC-DMVEKP---ARVAELMAQWL 293 (357)
T ss_pred CCCEEEE-ecccCH---HHHHHHHHHHH
Confidence 8999998 666544 45667777777
No 452
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.14 E-value=0.0033 Score=57.57 Aligned_cols=115 Identities=10% Similarity=0.221 Sum_probs=81.4
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCC-CCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS-PSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~-~~~fD~V~ 151 (523)
.+.++.||||-.|.+..+|.+.++..++++.|+++..++.|.++.... ..+++...+|... ++. +..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-----~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-----VLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-----ccCccCCcCEEE
Confidence 445599999999999999999999889999999999999999876433 4667777777743 233 33789988
Q ss_pred E--------cccccccee-ee--cceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871 152 M--------ERLTGKDQK-IS--ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 200 (523)
Q Consensus 152 ~--------~~~~~~~~~-~~--~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~ 200 (523)
. ..++..+.. +. +.+.+-|+- ...++++.|...+|.+......
T Consensus 91 IAGMGG~lI~~ILee~~~~l~~~~rlILQPn~------~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 91 IAGMGGTLIREILEEGKEKLKGVERLILQPNI------HTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred EeCCcHHHHHHHHHHhhhhhcCcceEEECCCC------CHHHHHHHHHhCCceeeeeeee
Confidence 7 122222211 10 112344432 5788999999999998665543
No 453
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.11 E-value=0.0048 Score=56.61 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhcCCCCCC----CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 009871 318 ESAHLMAAVLARNPTIVA----GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 393 (523)
Q Consensus 318 ~~a~~la~~l~~~~~~~~----~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 393 (523)
+++..|.+||.......+ ..++||+||=+.... +...+.-.|+.+|+++. .. .+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~----------~~---------~I~ 88 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQ----------HP---------GIL 88 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCC----------CC---------Cce
Confidence 578899999987543222 259999999654222 22233346999999761 10 112
Q ss_pred eeecCCCCcchhhhhhcCCCccEEEEccccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcE-----EEEEEee----
Q 009871 394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPA-----FILCHIF---- 461 (523)
Q Consensus 394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~-----~~l~~~~---- 461 (523)
+-|+-+.. + ...+.++||+|.++=|+-+. ..--.+++.+.++| +++|. +++..+.
T Consensus 89 qqDFm~rp-l---p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL---------~~~g~~~~~~LFlVlP~~Cv~ 155 (219)
T PF11968_consen 89 QQDFMERP-L---PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL---------KPPGLSLFPSLFLVLPLPCVT 155 (219)
T ss_pred eeccccCC-C---CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh---------CCCCccCcceEEEEeCchHhh
Confidence 22333221 0 01135689999999777443 34557888899999 44555 7665554
Q ss_pred --cCCChhHHHHHHHHcCCEEEEEcC
Q 009871 462 --RQVDEPSMLSAATQCGFRLVDKWP 485 (523)
Q Consensus 462 --r~~~~~~~~~~~~~~gf~~~~~~~ 485 (523)
|..+.+.+.+.+...||...+...
T Consensus 156 NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 156 NSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred cccccCHHHHHHHHHhCCcEEEEEEe
Confidence 456667888999999999877644
No 454
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.10 E-value=0.00032 Score=63.84 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=55.0
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC-CCCCCceeEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR-QISPSSIDIVT 151 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~ 151 (523)
.+.++||+=||+|.++...+.++ ..+|+.||.++.+++..+++.+.. ..++..++.|+... +.. ......||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~-l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF-LLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH-HHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH-HHhhcccCCCceEEE
Confidence 68999999999999999988885 357999999999999999987532 23588888886532 100 11367899997
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 120 l 120 (183)
T PF03602_consen 120 L 120 (183)
T ss_dssp E
T ss_pred E
Confidence 7
No 455
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.07 E-value=0.00072 Score=67.47 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--------CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--------SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 393 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--------~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 393 (523)
++++++ ...++.+|||..||+|.+...+... ....++|.|+++.++..++.|+..++... ....+.
T Consensus 37 l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~--~~~~i~ 110 (311)
T PF02384_consen 37 LMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN--SNINII 110 (311)
T ss_dssp HHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC--BGCEEE
T ss_pred HHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc--cccccc
Confidence 444554 3446779999999999877666552 45589999999999999999998766542 112232
Q ss_pred eeecCCCCcchhhhhhcCCCccEEEEcccc
Q 009871 394 RLEWGNRDHIEAIKEENNEGFEVILGTDVS 423 (523)
Q Consensus 394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~ 423 (523)
..|.-.... ......||+|+++...
T Consensus 111 ~~d~l~~~~-----~~~~~~~D~ii~NPPf 135 (311)
T PF02384_consen 111 QGDSLENDK-----FIKNQKFDVIIGNPPF 135 (311)
T ss_dssp ES-TTTSHS-----CTST--EEEEEEE--C
T ss_pred ccccccccc-----cccccccccccCCCCc
Confidence 222211110 0013589999998543
No 456
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.04 E-value=0.0016 Score=63.08 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=68.3
Q ss_pred HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 401 (523)
Q Consensus 322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~ 401 (523)
-+++.+.+.....++..|||+|+|+|.++..++..+ .+|+++|.++.+++.+++.... ..++.+...|.-+.+
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh------cccceeeecchhccc
Confidence 344555554455588999999999999999998887 8999999999999999876552 256777666655443
Q ss_pred cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHH
Q 009871 402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 438 (523)
Q Consensus 402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ 438 (523)
.... .......|+++ +.|+ .-.+++..+-.
T Consensus 90 ~~~~----~~~~~~~vv~N-lPy~--is~~il~~ll~ 119 (262)
T PF00398_consen 90 LYDL----LKNQPLLVVGN-LPYN--ISSPILRKLLE 119 (262)
T ss_dssp GGGH----CSSSEEEEEEE-ETGT--GHHHHHHHHHH
T ss_pred cHHh----hcCCceEEEEE-eccc--chHHHHHHHhh
Confidence 2210 12355677776 5553 23344444444
No 457
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.04 E-value=0.0026 Score=55.37 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=41.9
Q ss_pred CCCCeEEEECCCccHHHHHHHh-----cCCCEEEEEcCChHHHHHHHHHHHhcC
Q 009871 334 VAGKKVLELGCGCGGICSMVAA-----GSADLVVATDGDSIALDLLAQNVTANL 382 (523)
Q Consensus 334 ~~~~~VLElG~G~G~l~~~~a~-----~~~~~V~~~D~~~~~l~~~~~n~~~n~ 382 (523)
.+..+|+|+|||-|.++..++. ....+|+++|.++..++.++...+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4667999999999999999988 556699999999999999888776644
No 458
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.03 E-value=0.0017 Score=66.51 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=75.8
Q ss_pred CcccccchhHHHHHHHHhcCCCC-CCC---CeEEEECCCccHHHHHHHhcCCCEEE--EEcCChHHHHHHHHHHHhcCCC
Q 009871 311 STGLMLWESAHLMAAVLARNPTI-VAG---KKVLELGCGCGGICSMVAAGSADLVV--ATDGDSIALDLLAQNVTANLKP 384 (523)
Q Consensus 311 ~~G~~~W~~a~~la~~l~~~~~~-~~~---~~VLElG~G~G~l~~~~a~~~~~~V~--~~D~~~~~l~~~~~n~~~n~~~ 384 (523)
+.|.+...++....+.|.+.... ..+ +.+||+|||+|.++..+..++.-.+. .-|..+..++.|.+ -++.
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvp 164 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVP 164 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcc
Confidence 44455555665555555544322 122 47899999999999988888643222 12444444444432 1222
Q ss_pred CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC-ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871 385 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 463 (523)
Q Consensus 385 ~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~ 463 (523)
.....+...+ .+++...||+|-++.|+-... .-.-++-.+.++| .|||.++++...-.
T Consensus 165 a~~~~~~s~r------------LPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvL---------RpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 165 AMIGVLGSQR------------LPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVL---------RPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhhhcccc------------ccCCccchhhhhcccccccchhcccceeehhhhhh---------ccCceEEecCCccc
Confidence 1101110111 256778999999998875422 2234778899999 78999999887643
No 459
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.97 E-value=0.0017 Score=64.63 Aligned_cols=48 Identities=27% Similarity=0.268 Sum_probs=43.1
Q ss_pred eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC
Q 009871 338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP 385 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~ 385 (523)
.|||+|+|||.++.+++..|+..|++++.=.-|.++|++-...|+.+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sd 116 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSD 116 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCcc
Confidence 689999999977777777799999999988889999999999999873
No 460
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.012 Score=59.55 Aligned_cols=144 Identities=22% Similarity=0.213 Sum_probs=89.2
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC---CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395 (523)
Q Consensus 319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 395 (523)
+|.+.+..| +..+|.+|||+.++.|+=+..+|+... ..|++.|.++.=++.++.|+..-++. ++.+...
T Consensus 144 sS~l~a~~L----~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~----nv~~~~~ 215 (355)
T COG0144 144 ASQLPALVL----DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR----NVIVVNK 215 (355)
T ss_pred HHHHHHHHc----CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC----ceEEEec
Confidence 344445444 335789999999999998888888742 45799999999999999999997764 2333322
Q ss_pred ecCCCCcchhhhhhcCCCccEEEEc-------------cccCCC---------CChHHHHHHHHHHhhccCCCCCCCCCc
Q 009871 396 EWGNRDHIEAIKEENNEGFEVILGT-------------DVSYIP---------EAILPLFATAKELTASSNKSLREDQQP 453 (523)
Q Consensus 396 dw~~~~~~~~~~~~~~~~fD~Ii~~-------------d~~y~~---------~~~~~l~~~l~~ll~~~~~~~~~~~~g 453 (523)
|=...... .....+||.|+.- |+.+.. ..-..++....++| +|||
T Consensus 216 d~~~~~~~----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l---------k~GG 282 (355)
T COG0144 216 DARRLAEL----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL---------KPGG 282 (355)
T ss_pred cccccccc----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc---------CCCC
Confidence 21111000 0112259999942 111221 13455666777777 6799
Q ss_pred EEEEEEeecCCCh-hHHHH-HHHHc-CCEEEEE
Q 009871 454 AFILCHIFRQVDE-PSMLS-AATQC-GFRLVDK 483 (523)
Q Consensus 454 ~~~l~~~~r~~~~-~~~~~-~~~~~-gf~~~~~ 483 (523)
.++.+...-...+ +...+ .++++ +|++..+
T Consensus 283 ~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 283 VLVYSTCSLTPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred EEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence 9987766654443 34444 44444 6766665
No 461
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0055 Score=60.78 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
.++.+|||.=||.|.+++.++..... .|+++|++|.+++..+++.+.+. ..+..+++|+... ....+.||-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev----~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV----APELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh----hhccccCCEEE
Confidence 46899999999999999999988533 39999999999999999876542 4588999999876 33337899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
+
T Consensus 262 m 262 (341)
T COG2520 262 M 262 (341)
T ss_pred e
Confidence 9
No 462
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.015 Score=53.87 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC-
Q 009871 336 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG- 413 (523)
Q Consensus 336 ~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~- 413 (523)
+++++|||+|.|.-|..+|-. ...+|+.+|....=+..++.-...-++ .++.+....- +...+ ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L----~nv~i~~~Ra---E~~~~-----~~~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL----ENVEIVHGRA---EEFGQ-----EKKQ 135 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC----CCeEEehhhH---hhccc-----cccc
Confidence 689999999999544544423 334699999887666666654444333 2344433222 21111 123
Q ss_pred ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-hhHHHHHHHHcCCEEEEEcCCCCC
Q 009871 414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKWPSKNS 489 (523)
Q Consensus 414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-~~~~~~~~~~~gf~~~~~~~~~~~ 489 (523)
||+|++-- ...+..++.-+..++ +++|.++........+ ..+...++...|+.+..+..-..+
T Consensus 136 ~D~vtsRA----va~L~~l~e~~~pll---------k~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 136 YDVVTSRA----VASLNVLLELCLPLL---------KVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred CcEEEeeh----ccchHHHHHHHHHhc---------ccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 99999863 245777888888888 5566664433332222 235566677788998888664333
No 463
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.89 E-value=0.002 Score=62.97 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=65.5
Q ss_pred hhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CC
Q 009871 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR 140 (523)
Q Consensus 62 ~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~ 140 (523)
.+..+.-+.+...++..++|.=-|.|.++..+++..++++|+|+|.++.+++.|+++......++.+++++..++.- ..
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHH
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHH
Confidence 46667767777788889999999999999999999888999999999999999999876556889999999876420 00
Q ss_pred CC-CCCceeEEEE
Q 009871 141 QI-SPSSIDIVTM 152 (523)
Q Consensus 141 ~~-~~~~fD~V~~ 152 (523)
.. ....+|.|+.
T Consensus 87 ~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 87 ELNGINKVDGILF 99 (310)
T ss_dssp HTTTTS-EEEEEE
T ss_pred HccCCCccCEEEE
Confidence 11 2357899877
No 464
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0068 Score=61.33 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=61.7
Q ss_pred hhcCCCCCeEEEECCCccccHHHHHhhCC--CCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCC-C
Q 009871 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISP-S 145 (523)
Q Consensus 70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~-~ 145 (523)
++.+.++.+|||.+++.|.=+.++++..+ +..|+++|+|+.-++..+++.+.. ..++...+.|.... +...+. +
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~--~~~~~~~~ 228 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL--AELLPGGE 228 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc--cccccccC
Confidence 34557889999999999999999999865 366799999999999999887543 35567788777643 111222 3
Q ss_pred ceeEEEE
Q 009871 146 SIDIVTM 152 (523)
Q Consensus 146 ~fD~V~~ 152 (523)
.||.|++
T Consensus 229 ~fD~iLl 235 (355)
T COG0144 229 KFDRILL 235 (355)
T ss_pred cCcEEEE
Confidence 5999999
No 465
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.88 E-value=0.0019 Score=57.09 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
....+.|+|+|+|.++...+.. .-+|++|+.+|...+.|.++.... ..+++.+.+|+.+.+ | +..|+|+|
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~----f--e~ADvvic 102 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD----F--ENADVVIC 102 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----c--cccceeHH
Confidence 3478999999999999776666 346999999999999999986433 368999999999773 3 35799999
No 466
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.014 Score=53.39 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD 148 (523)
.++.+|+|+||-+|..+..+++. .++..|+|+|+.|-- ...++.++++|++..+. -..+....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 46899999999999999888888 455679999997762 12459999999987532 1123345589
Q ss_pred EEEE---ccccccceeee--------------cceEEecCCeEEEe-e---CHHHHHHHHHhCCCcEEEEE
Q 009871 149 IVTM---ERLTGKDQKIS--------------ENFYVRGDGTRAFY-F---SNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 149 ~V~~---~~~~~~~~~~~--------------~~~~~~~~g~~~~~-~---~~~~l~~ll~~~Gf~~~~~~ 198 (523)
+|+| .+. .....+. ...+++++|.+..- | ..+++...+++ .|+.+++.
T Consensus 114 vV~sD~ap~~-~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~-~F~~v~~~ 182 (205)
T COG0293 114 VVLSDMAPNT-SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR-LFRKVKIF 182 (205)
T ss_pred eEEecCCCCc-CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH-hhceeEEe
Confidence 9998 111 0000000 02267778877542 2 45556666654 47776654
No 467
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.82 E-value=0.015 Score=56.83 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=81.1
Q ss_pred eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871 338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 417 (523)
Q Consensus 338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I 417 (523)
+|+||.||.|++..-+...|...|.++|+++.+++..+.|.... +...|..+.... .+ ...+|+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~----~~-~~~~D~l 66 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEK----DF-IPDIDLL 66 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchh----hc-CCCCCEE
Confidence 69999999998887777778888999999999999998886421 011111111100 11 2479999
Q ss_pred EEccccCC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC-------ChhHHHHHHHHcCCEE
Q 009871 418 LGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-------DEPSMLSAATQCGFRL 480 (523)
Q Consensus 418 i~~d~~y~----------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~-------~~~~~~~~~~~~gf~~ 480 (523)
+++...-. .+....|+..+.++++.. .+.+++....... ....+.+.+++.|+.+
T Consensus 67 ~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~--------~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 67 TGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEK--------KPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred EeCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhc--------CCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 98754332 122334666666777321 2334443333221 1245677788999998
Q ss_pred EEEcCCCCCCCCcch
Q 009871 481 VDKWPSKNSASPSES 495 (523)
Q Consensus 481 ~~~~~~~~~~~~~~~ 495 (523)
....-...+.+..+.
T Consensus 139 ~~~~l~a~~~GvPQ~ 153 (275)
T cd00315 139 YWKLLNASDYGVPQN 153 (275)
T ss_pred EEEEEEHHHcCCCCC
Confidence 665443344444443
No 468
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0032 Score=56.65 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (523)
-.+.++||+=+|+|.++...+.++ ...++.||.+..++...++|.+... .+...+..|+... +...-..+.||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~-L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA-LKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH-HHhcCCCCcccEEE
Confidence 578999999999999999999886 4579999999999999999875433 6788889898721 11111122599998
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
.
T Consensus 120 l 120 (187)
T COG0742 120 L 120 (187)
T ss_pred e
Confidence 8
No 469
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.79 E-value=0.016 Score=50.71 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=47.0
Q ss_pred EEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCCCc-EEEEEeeccC--CccCCCCCC-CceeEE
Q 009871 79 VLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLIS--DDLSRQISP-SSIDIV 150 (523)
Q Consensus 79 iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~-~~fD~V 150 (523)
++|+|||+|... .+....+. ..++|+|+++.|+..++......... +.+...|... . ++.. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVL----PFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCC----CCCCCCceeEE
Confidence 999999999976 34444322 47999999999999966544221111 6788888765 4 4555 489999
No 470
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.0019 Score=57.75 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=59.2
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
.+++|||+|+|+|..+...++.+ ...|++.|+.|..+...+-|.+.++..+.+...|+.. .+..||+++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEe
Confidence 57899999999999998887775 3469999999999998888888777888888888852 4678999987
No 471
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.77 E-value=0.00047 Score=62.92 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=47.4
Q ss_pred CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCc----cCCCCC--CCc
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD----LSRQIS--PSS 146 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~~~--~~~ 146 (523)
..+.+|||+||++|..+..++++. +...|+|+|+.+. . ....+.++++|+.+.. +...+. .+.
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D----PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G----S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc------c----cccceeeeecccchhhHHHhhhhhccccccC
Confidence 356899999999999999999985 5689999999887 1 1134555566654321 111122 268
Q ss_pred eeEEEE
Q 009871 147 IDIVTM 152 (523)
Q Consensus 147 fD~V~~ 152 (523)
||+|+|
T Consensus 92 ~dlv~~ 97 (181)
T PF01728_consen 92 FDLVLS 97 (181)
T ss_dssp ESEEEE
T ss_pred cceecc
Confidence 999999
No 472
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.76 E-value=0.0026 Score=60.91 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+++.+||=||-|.|..+..+++..+..+|+.||+++.+++.|++... ...++++++.+|.... +. .....+||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~-~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LK-ETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HH-TSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HH-hccCCccc
Confidence 57899999999999999999887656789999999999999998643 2357899999998642 00 11122899
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
+|+.
T Consensus 153 vIi~ 156 (246)
T PF01564_consen 153 VIIV 156 (246)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 473
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.077 Score=48.00 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=92.9
Q ss_pred cccchhHHH-HHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHH-HhcCCCCCC
Q 009871 314 LMLWESAHL-MAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNV-TANLKPPFL 387 (523)
Q Consensus 314 ~~~W~~a~~-la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~-~~n~~~~~~ 387 (523)
.+.|+.-.- ||..++. +..+.+|.+||=||+-+|-..+.++.- +...|++++.++.+..-+-.-+ +.+++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni---- 126 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI---- 126 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc----
Confidence 567865432 4444443 345668999999999999777887776 4458999999997664433222 22221
Q ss_pred CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-
Q 009871 388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 466 (523)
Q Consensus 388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~- 466 (523)
+.. .+++...+....+ -+..|+|.. |+ -.+....-+...+..+| +++|.++++...|..+.
T Consensus 127 --~PI----L~DA~~P~~Y~~~-Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FL---------k~~G~~~i~iKArSIdvT 188 (231)
T COG1889 127 --IPI----LEDARKPEKYRHL-VEKVDVIYQ-DV-AQPNQAEILADNAEFFL---------KKGGYVVIAIKARSIDVT 188 (231)
T ss_pred --eee----ecccCCcHHhhhh-cccccEEEE-ec-CCchHHHHHHHHHHHhc---------ccCCeEEEEEEeeccccc
Confidence 111 1222111111111 124666655 32 23667788888999999 66999999888887542
Q ss_pred ---hHHH----HHHHHcCCEEEEEcC
Q 009871 467 ---PSML----SAATQCGFRLVDKWP 485 (523)
Q Consensus 467 ---~~~~----~~~~~~gf~~~~~~~ 485 (523)
.+++ +.+++.||++.++..
T Consensus 189 ~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 189 ADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred CCHHHHHHHHHHHHHhcCceeeEEec
Confidence 3333 456789999988765
No 474
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.75 E-value=0.0058 Score=59.48 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=46.7
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccC-CCCCCCceeEEE
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLS-RQISPSSIDIVT 151 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~-~~~~~~~fD~V~ 151 (523)
..++||||||...+--.|..+..+++++|.|+++..++.|+++...+ ..+|+++...-...=+. ...+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 56899999999987544544433899999999999999999987554 46788765532211011 012346899999
Q ss_pred E
Q 009871 152 M 152 (523)
Q Consensus 152 ~ 152 (523)
|
T Consensus 183 C 183 (299)
T PF05971_consen 183 C 183 (299)
T ss_dssp E
T ss_pred c
Confidence 9
No 475
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.75 E-value=0.026 Score=49.26 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=64.3
Q ss_pred EEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC-CCcc
Q 009871 339 VLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN-EGFE 415 (523)
Q Consensus 339 VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~-~~fD 415 (523)
++|+|||+|... .++.... ..++++|.++.++..++..... ... ..+.+...++... ..++.. ..||
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-----~~~~~~~~~~d 121 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL---GLVDFVVADALGG-----VLPFEDSASFD 121 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC---CceEEEEeccccC-----CCCCCCCCcee
Confidence 999999999654 3334333 3799999999999885443322 111 1134444444331 012223 3799
Q ss_pred EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871 416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 462 (523)
Q Consensus 416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r 462 (523)
++......+... ...++..+.+.+ +++|.+++.....
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~l---------~~~g~~~~~~~~~ 158 (257)
T COG0500 122 LVISLLVLHLLP-PAKALRELLRVL---------KPGGRLVLSDLLR 158 (257)
T ss_pred EEeeeeehhcCC-HHHHHHHHHHhc---------CCCcEEEEEeccC
Confidence 994433333344 788899999999 6688888776653
No 476
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.71 E-value=0.031 Score=51.37 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-CC
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NE 412 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-~~ 412 (523)
.+.++.|+||-=|.++..+...+ +..+++.|+++..++.|.+|+..|++. +++.+..+|--. .+. ..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~---~~i~vr~~dgl~--------~l~~~d 84 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS---ERIDVRLGDGLA--------VLELED 84 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc---ceEEEeccCCcc--------ccCccC
Confidence 45569999999999999999985 568999999999999999999999886 677776554321 122 33
Q ss_pred CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 482 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~ 482 (523)
.+|+|+.+- ..-..+...+..-...| +.-..++++... ....+.+.+.+.+|.+..
T Consensus 85 ~~d~ivIAG--MGG~lI~~ILee~~~~l---------~~~~rlILQPn~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 85 EIDVIVIAG--MGGTLIREILEEGKEKL---------KGVERLILQPNI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred CcCEEEEeC--CcHHHHHHHHHHhhhhh---------cCcceEEECCCC---CHHHHHHHHHhCCceeee
Confidence 799988663 22345666666666666 223467776433 345677788888888754
No 477
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.71 E-value=0.0023 Score=68.71 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=52.8
Q ss_pred CCCeEEEECCCccccHHHHHhhCC--------CCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCC-CCCC
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYP--------DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR-QISP 144 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~~ 144 (523)
...+|||.|||+|.++..++.+.+ ...++|+|+++.++..|+.+..... ..++..+.|.....+.. .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456899999999999998887643 2579999999999999988653221 23444544433211100 1113
Q ss_pred CceeEEEE
Q 009871 145 SSIDIVTM 152 (523)
Q Consensus 145 ~~fD~V~~ 152 (523)
+.||+|++
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 57999999
No 478
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.68 E-value=0.0043 Score=56.93 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=64.3
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE---
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM--- 152 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--- 152 (523)
..++|||||=+..+... ..+-..|+.||+.+. . -.+.+.|+.+..+|. -+.++||+|.+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-------~-------~~I~qqDFm~rplp~-~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-------H-------PGILQQDFMERPLPK-NESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC-------C-------CCceeeccccCCCCC-CcccceeEEEEEEE
Confidence 46899999986665433 222345999999873 1 135677777664432 34779999999
Q ss_pred ccc----------cccceeeecceEEecCCe-----E-----------EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871 153 ERL----------TGKDQKISENFYVRGDGT-----R-----------AFYFSNDFLTSLFKENGFDVEELG 198 (523)
Q Consensus 153 ~~~----------~~~~~~~~~~~~~~~~g~-----~-----------~~~~~~~~l~~ll~~~Gf~~~~~~ 198 (523)
..| ...... +++++|. + ..|++.+.+..++...||..++.+
T Consensus 114 LNfVP~p~~RG~Ml~r~~~-----fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHK-----FLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred EeeCCCHHHHHHHHHHHHH-----HhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 111 111111 3444444 2 235689999999999999987664
No 479
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.007 Score=58.17 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=73.1
Q ss_pred hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-
Q 009871 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL- 138 (523)
Q Consensus 61 ~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~- 138 (523)
..|..+.-+.+...+++..+|.=-|.|.++..++++++ ..+++|+|-++.+++.|++.......++.+++.+..++..
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEA 88 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHH
Confidence 34667776777778889999999999999999999976 4569999999999999999876556789999988765421
Q ss_pred CCCCCCCceeEEEE
Q 009871 139 SRQISPSSIDIVTM 152 (523)
Q Consensus 139 ~~~~~~~~fD~V~~ 152 (523)
.....-+++|.|+.
T Consensus 89 l~~~~i~~vDGiL~ 102 (314)
T COG0275 89 LKELGIGKVDGILL 102 (314)
T ss_pred HHhcCCCceeEEEE
Confidence 01123468999988
No 480
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.65 E-value=0.0031 Score=64.00 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
+.+|||+-||+|..+..++.+.++ .+|+++|+++.+++.+++|.+.+. .++++.+.|+...- . .....||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l-~--~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL-R--YRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH-H--HhCCCCCEEEe
Confidence 358999999999999999988433 579999999999999999886543 35888898887541 1 11357999966
No 481
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.65 E-value=0.00014 Score=65.13 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=37.4
Q ss_pred CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhc
Q 009871 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118 (523)
Q Consensus 75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~ 118 (523)
.+.++||+|+|.|..+..++..+.. |++.++|..|..+.+++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc
Confidence 4578999999999999999888655 99999999999998875
No 482
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.49 E-value=0.0034 Score=57.11 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871 321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 400 (523)
Q Consensus 321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~ 400 (523)
..+|....... .-..|+|.-||.|+-....|.+++ .|+++|+||.-+..|++|++..|+. .+|.+.+.||-+.
T Consensus 83 ~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~---~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 83 EHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP---DRITFICGDFLDL 155 (263)
T ss_pred HHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC---ceeEEEechHHHH
Confidence 34444444332 334799999999999999999976 5999999999999999999999997 5899999998653
Q ss_pred CcchhhhhhcCCCccEEEEcc
Q 009871 401 DHIEAIKEENNEGFEVILGTD 421 (523)
Q Consensus 401 ~~~~~~~~~~~~~fD~Ii~~d 421 (523)
- ..+ .+....+|+|..+.
T Consensus 156 ~--~~l-q~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 156 A--SKL-KADKIKYDCVFLSP 173 (263)
T ss_pred H--HHH-hhhhheeeeeecCC
Confidence 2 111 22233467888664
No 483
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.49 E-value=0.058 Score=53.03 Aligned_cols=133 Identities=11% Similarity=0.089 Sum_probs=81.2
Q ss_pred CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHH---HhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871 335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNV---TANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 410 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~---~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~ 410 (523)
.-.+||=||-|-|.-...+.+.. ..+|+.+|+||.|++.+++|. ..|..+....++++..-|- ..=+ .-.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA-----f~wl-r~a 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA-----FQWL-RTA 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH-----HHHH-Hhh
Confidence 34689999999994445555553 569999999999999999764 3455554556666653221 1111 112
Q ss_pred CCCccEEEEccccCC-CC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEE
Q 009871 411 NEGFEVILGTDVSYI-PE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLV 481 (523)
Q Consensus 411 ~~~fD~Ii~~d~~y~-~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~ 481 (523)
...||+||.- ..-- .. .-.++-..+++.| +++|.+++-...--...+ .+...++++|+.+.
T Consensus 363 ~~~fD~vIVD-l~DP~tps~~rlYS~eFY~ll~~~l---------~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~ 432 (508)
T COG4262 363 ADMFDVVIVD-LPDPSTPSIGRLYSVEFYRLLSRHL---------AETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVW 432 (508)
T ss_pred cccccEEEEe-CCCCCCcchhhhhhHHHHHHHHHhc---------CcCceEEEecCCCccCCceeeeehhHHHhCcceee
Confidence 4589999963 2111 11 1234555566666 568888875544222222 34577889998875
Q ss_pred EE
Q 009871 482 DK 483 (523)
Q Consensus 482 ~~ 483 (523)
-.
T Consensus 433 Py 434 (508)
T COG4262 433 PY 434 (508)
T ss_pred ee
Confidence 43
No 484
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.0088 Score=59.83 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCC--------------------------------C-------EEEEEeCCHHHHHH
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPD--------------------------------V-------FVYACDFSPRAVNL 114 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~v~gvD~S~~~l~~ 114 (523)
.++..++|-=||+|.++...+-..++ + .++|+|+++.||+.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 34568999999999999877766532 1 27799999999999
Q ss_pred HHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 115 VMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 115 a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
|+.|+... ...++|.++|+..+ ..++ +.+|+|+|
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l--~~~~--~~~gvvI~ 305 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDL--KEPL--EEYGVVIS 305 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhC--CCCC--CcCCEEEe
Confidence 99987543 46799999999966 2222 78999999
No 485
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.42 E-value=0.0072 Score=55.98 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=48.3
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc----------cCCCcEEEEEeeccCCccCC
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD----------FTETRVSTFVCDLISDDLSR 140 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~----------~~~~~v~~~~~d~~~~~~~~ 140 (523)
+...++...+|||||.|......+-..+-.+++||++.+...+.|+.... ....++++.++|+.+.++..
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 34467889999999999999887766543459999999998888875321 12356788888887542110
Q ss_pred CCCCCceeEEEE
Q 009871 141 QISPSSIDIVTM 152 (523)
Q Consensus 141 ~~~~~~fD~V~~ 152 (523)
. .-...|+|++
T Consensus 118 ~-~~s~AdvVf~ 128 (205)
T PF08123_consen 118 D-IWSDADVVFV 128 (205)
T ss_dssp H-HGHC-SEEEE
T ss_pred h-hhcCCCEEEE
Confidence 0 0124688877
No 486
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.012 Score=57.42 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=67.5
Q ss_pred CCCCCCeEEEECCCccHHHHHHHhc-C--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871 332 TIVAGKKVLELGCGCGGICSMVAAG-S--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 408 (523)
Q Consensus 332 ~~~~~~~VLElG~G~G~l~~~~a~~-~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~ 408 (523)
..+.-++|||+|.|.| .++.++.. . ...++.++.|+. +...-..+..|... ...+|...+-.....+
T Consensus 110 ~dfapqsiLDvG~GPg-tgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t--------~~td~r~s~vt~dRl~ 179 (484)
T COG5459 110 PDFAPQSILDVGAGPG-TGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVST--------EKTDWRASDVTEDRLS 179 (484)
T ss_pred CCcCcchhhccCCCCc-hhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhccc--------ccCCCCCCccchhccC
Confidence 4467788999999998 55544433 2 347888888873 34444444544332 2355655432222122
Q ss_pred hc-CCCccEEEEccccCCCCC---hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871 409 EN-NEGFEVILGTDVSYIPEA---ILPLFATAKELTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 409 ~~-~~~fD~Ii~~d~~y~~~~---~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
++ ...|++|+..|-+..... +...++.+..++ .|||.+++|...
T Consensus 180 lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~---------~~gg~lVivErG 227 (484)
T COG5459 180 LPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLL---------APGGHLVIVERG 227 (484)
T ss_pred CCccceeehhhhhhhhccccCcchHHHHHHHHHHhc---------cCCCeEEEEeCC
Confidence 22 347899888877666443 444566666666 579999998755
No 487
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.30 E-value=0.017 Score=55.62 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=62.5
Q ss_pred cccccccchhh---hHHHH-hhhhcCC--CCCeEEEECCCcccc----HHHHHhhCC-----CCEEEEEeCCHHHHHHHH
Q 009871 52 HQDRFFKDRHY---LDKEW-GRYFSGA--GRKDVLEVGCGAGNT----IFPLIAAYP-----DVFVYACDFSPRAVNLVM 116 (523)
Q Consensus 52 ~~~~f~~~~~~---l~~~~-~~~~~~~--~~~~iLDiGcG~G~~----~~~l~~~~~-----~~~v~gvD~S~~~l~~a~ 116 (523)
+...||.+.+. +.+++ |.++... ..-+|.-+||+||-- +..|.+..+ ..+|+|+|+|..+|+.|+
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 44666655432 22222 3333322 367899999999964 444555553 589999999999999998
Q ss_pred hcc-c-----c-------------C-C----------CcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871 117 THK-D-----F-------------T-E----------TRVSTFVCDLISDDLSRQISPSSIDIVTME 153 (523)
Q Consensus 117 ~~~-~-----~-------------~-~----------~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (523)
+=. . . . . ..|.|.+.|+... +...+.||+|+|.
T Consensus 147 ~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~----~~~~~~fD~IfCR 209 (268)
T COG1352 147 AGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDD----SPFLGKFDLIFCR 209 (268)
T ss_pred cCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCC----ccccCCCCEEEEc
Confidence 611 0 0 0 0 2467777777655 2246679999993
No 488
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.28 E-value=0.0095 Score=59.03 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=46.9
Q ss_pred CCCCeEEEECCCccccHHHHHhhC----CCCEEEEEeCCHHHHHHHHhccc-cCCCcEEE--EEeeccC
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAY----PDVFVYACDFSPRAVNLVMTHKD-FTETRVST--FVCDLIS 135 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~----~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~--~~~d~~~ 135 (523)
+++..|+|+|||+|.-+..|++.. +..++++||+|..+++.+.++.. ..-+.+.+ +++|..+
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 456689999999999987776653 35789999999999999988765 33344444 6777754
No 489
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.25 E-value=0.0063 Score=59.59 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=61.9
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSID 148 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD 148 (523)
+.+.++.+|||+++|.|.=+..+++... ...|++.|+++.-+...+++... ...++.....|...... ......||
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~--~~~~~~fd 158 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP--KKPESKFD 158 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH--HHHTTTEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc--cccccccc
Confidence 4557888999999999999999999854 67999999999999999887643 34677777777765411 12234699
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.|+.
T Consensus 159 ~Vlv 162 (283)
T PF01189_consen 159 RVLV 162 (283)
T ss_dssp EEEE
T ss_pred hhhc
Confidence 9999
No 490
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.20 E-value=0.014 Score=53.03 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
.++++||.||-|-|.....+.++.|.- =+-|+..|..++..+...-..-.+|-...+-.++ ....++++.||.|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD--vl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPDVLKRMRDWGWREKENVIILEGRWED--VLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcc-eEEEecCHHHHHHHHhcccccccceEEEecchHh--hhccccccCcceeEee
Confidence 688999999999999998887776643 4568999999999998765444667777665543 222577899999988
Q ss_pred ---------ccccccceeeecceEEecCCeEEEee
Q 009871 153 ---------ERLTGKDQKISENFYVRGDGTRAFYF 178 (523)
Q Consensus 153 ---------~~~~~~~~~~~~~~~~~~~g~~~~~~ 178 (523)
..|.+..-+ .++|+|.+.||-
T Consensus 177 Ty~e~yEdl~~~hqh~~r-----LLkP~gv~SyfN 206 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVR-----LLKPEGVFSYFN 206 (271)
T ss_pred chhhHHHHHHHHHHHHhh-----hcCCCceEEEec
Confidence 222222222 678888888753
No 491
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.15 E-value=0.015 Score=53.70 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCC-c-cCCCCCCCcee
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISD-D-LSRQISPSSID 148 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~-~-~~~~~~~~~fD 148 (523)
-.+++.||||.=||..++.++...| +++|+++|+++...+.+.+..+. ....+++++++..+. + +-...+.++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 4678999999999999999998855 68999999999999999775432 246799999987641 1 11123578999
Q ss_pred EEEE
Q 009871 149 IVTM 152 (523)
Q Consensus 149 ~V~~ 152 (523)
.+|.
T Consensus 152 faFv 155 (237)
T KOG1663|consen 152 FAFV 155 (237)
T ss_pred EEEE
Confidence 9987
No 492
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.09 E-value=0.013 Score=59.00 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 412 (523)
Q Consensus 333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~ 412 (523)
..++..++|+|||.|+...+.+......+++.|.++.-+.....-.....+.. ...+ ..-+..+. ++++.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~--~~~~~~~~-------~fedn 177 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNF--VVADFGKM-------PFEDN 177 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcce--ehhhhhcC-------CCCcc
Confidence 34666899999999988888888877789999998865544433222222221 1122 22222221 34567
Q ss_pred CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871 413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFIL 457 (523)
Q Consensus 413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l 457 (523)
.||.+-+.|+.-+......+++.+.+.+ +|||.++.
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~---------kpGG~~i~ 213 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVL---------KPGGLFIV 213 (364)
T ss_pred ccCcEEEEeecccCCcHHHHHHHHhccc---------CCCceEEe
Confidence 9999999999999999999999999999 67888775
No 493
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.098 Score=47.34 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=56.9
Q ss_pred hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (523)
Q Consensus 71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 150 (523)
++..++.+||=+|+-+|....+++.-.+...|+||++|+.+....-..+.. ..|+--+..|+....--..+ =+.+|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~-Ve~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEKYRHL-VEKVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHHhhhh-cccccEE
Confidence 456789999999999999999999987778899999999876443322211 15677788888643110011 2458999
Q ss_pred EE
Q 009871 151 TM 152 (523)
Q Consensus 151 ~~ 152 (523)
+.
T Consensus 150 y~ 151 (231)
T COG1889 150 YQ 151 (231)
T ss_pred EE
Confidence 88
No 494
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.88 E-value=0.056 Score=53.61 Aligned_cols=113 Identities=15% Similarity=0.053 Sum_probs=67.9
Q ss_pred CCCeEEEECCCccHHHHHHHh----c-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc-chhhh-
Q 009871 335 AGKKVLELGCGCGGICSMVAA----G-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH-IEAIK- 407 (523)
Q Consensus 335 ~~~~VLElG~G~G~l~~~~a~----~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~-~~~~~- 407 (523)
++..++|||||+|.=...+.. . ...+++++|+|.++|+.+..++..... ..+.+.. -|++... +.-+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~-l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAG-LLGTYDDGLAWLKR 150 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEE-EEecHHHHHhhccc
Confidence 566899999999954444332 1 245799999999999999888873222 2344432 2332211 11010
Q ss_pred hhcCCCccEEEEc-cccC--CCCChHHHHHHHHH-HhhccCCCCCCCCCcEEEEEEee
Q 009871 408 EENNEGFEVILGT-DVSY--IPEAILPLFATAKE-LTASSNKSLREDQQPAFILCHIF 461 (523)
Q Consensus 408 ~~~~~~fD~Ii~~-d~~y--~~~~~~~l~~~l~~-ll~~~~~~~~~~~~g~~~l~~~~ 461 (523)
+.......+|+.- ..+- .+.....+++.+.+ .| .|++.+++..-.
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l---------~~~d~lLiG~D~ 199 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATAL---------SPSDSFLIGLDG 199 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhC---------CCCCEEEEecCC
Confidence 0012345666633 2343 35567788888888 88 668888886544
No 495
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.74 E-value=0.029 Score=55.01 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=56.8
Q ss_pred CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcc--------ccCCCcEEEEEeeccCCccCCCCCC
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHK--------DFTETRVSTFVCDLISDDLSRQISP 144 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~--------~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (523)
+...+||-+|-|.|-.+..+.+. | --+|+-||++|+|++.++++. ....++++.+..|+.+. - .-..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w--l-r~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW--L-RTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH--H-Hhhc
Confidence 45678999999999999888755 5 357999999999999999532 11247889998888642 1 1124
Q ss_pred CceeEEEE
Q 009871 145 SSIDIVTM 152 (523)
Q Consensus 145 ~~fD~V~~ 152 (523)
+.||+|+.
T Consensus 364 ~~fD~vIV 371 (508)
T COG4262 364 DMFDVVIV 371 (508)
T ss_pred ccccEEEE
Confidence 58999998
No 496
>PRK10742 putative methyltransferase; Provisional
Probab=95.71 E-value=0.028 Score=53.04 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCCC--eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-------CC---CcEEEEEeeccCCccCCC
Q 009871 74 AGRK--DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------TE---TRVSTFVCDLISDDLSRQ 141 (523)
Q Consensus 74 ~~~~--~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-------~~---~~v~~~~~d~~~~~~~~~ 141 (523)
.++. +|||+=+|.|..++.++.+ ++.|+++|-++.+....+..... .. .+++.+++|.... +. .
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~-L~-~ 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LT-D 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH-Hh-h
Confidence 3444 8999999999999999988 77799999999998888775432 11 4678888887643 11 1
Q ss_pred CCCCceeEEEE
Q 009871 142 ISPSSIDIVTM 152 (523)
Q Consensus 142 ~~~~~fD~V~~ 152 (523)
. ..+||+|++
T Consensus 161 ~-~~~fDVVYl 170 (250)
T PRK10742 161 I-TPRPQVVYL 170 (250)
T ss_pred C-CCCCcEEEE
Confidence 2 337999999
No 497
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.46 E-value=0.044 Score=50.43 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHHHhcC-CCCC-CCCeEEEECCCccHHHHHHHh-cCCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecC
Q 009871 323 MAAVLARN-PTIV-AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWG 398 (523)
Q Consensus 323 la~~l~~~-~~~~-~~~~VLElG~G~G~l~~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~ 398 (523)
|++.|..- .... ++.++||+|.|.-.+=-++-. ..+-+.+++|+|+.+++.|+.++..| ++. ..++.+.- .
T Consensus 64 laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~---~~I~lr~q--k 138 (292)
T COG3129 64 LADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE---RAIRLRRQ--K 138 (292)
T ss_pred HHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh---hheeEEec--c
Confidence 56666543 3332 455889998886532222222 24558999999999999999999999 443 22332211 0
Q ss_pred CCCcchhhhhhcCCCccEEEEccccCCC
Q 009871 399 NRDHIEAIKEENNEGFEVILGTDVSYIP 426 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 426 (523)
+.+.+-+-..-..+.||..+|+..+|..
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred CccccccccccccceeeeEecCCCcchh
Confidence 1111100000124689999999888863
No 498
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.43 E-value=0.069 Score=50.03 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=61.9
Q ss_pred CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (523)
Q Consensus 74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (523)
..+++||=+|=+--. ++.++-.++..+|+-+|+++.+++..++.+...+.+++.++.|+.+. +|.. -.++||++++
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~-LP~~-~~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDP-LPEE-LRGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TT-TSS-BSEEEE-
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccccc-CCHH-HhcCCCEEEeC
Confidence 468899999844332 33444445567899999999999999887766666699999999862 3321 2478999999
Q ss_pred --------ccccccceeeecceEEecCCeEEEe-e-----CHH---HHHHHHHhCCCcEEEEEe
Q 009871 153 --------ERLTGKDQKISENFYVRGDGTRAFY-F-----SND---FLTSLFKENGFDVEELGL 199 (523)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~g~~~~~-~-----~~~---~l~~ll~~~Gf~~~~~~~ 199 (523)
.-|+..+-. .+++.|...|+ + +.+ ++++.+.+.||.+..+..
T Consensus 120 PPyT~~G~~LFlsRgi~-----~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 120 PPYTPEGLKLFLSRGIE-----ALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp --SSHHHHHHHHHHHHH-----TB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHH-----HhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 112111111 23334422221 1 232 578888899998866643
No 499
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.37 E-value=0.04 Score=54.26 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=50.1
Q ss_pred CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (523)
Q Consensus 76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (523)
-...+|+|.|.|+.+..++..+|. |-|+++....+..++.... +.|..+-+|+.+. . |. -|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~----P~--~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-T----PK--GDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc---CCcceeccccccc-C----CC--cCeEEE
Confidence 478999999999999999999988 8888888777766665442 3378888888764 2 22 368888
No 500
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.33 E-value=0.11 Score=51.34 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=68.0
Q ss_pred CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871 337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 416 (523)
Q Consensus 337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~ 416 (523)
...+|+|.|+|.+...+.... .+|-+++.+..-+-.+..+.. -++ ..+. .|--+ +. ..-|+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~gV----~~v~---gdmfq--------~~--P~~da 239 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PGV----EHVA---GDMFQ--------DT--PKGDA 239 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CCc----ceec---ccccc--------cC--CCcCe
Confidence 688999999999998888854 458888887766666655553 222 1121 11111 11 25679
Q ss_pred EEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871 417 ILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHI 460 (523)
Q Consensus 417 Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~ 460 (523)
|+..+|+++. ++...+++.+++.| +|+|.+++...
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL---------~~~GkIiv~E~ 276 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSL---------PPGGKIIVVEN 276 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhC---------CCCCEEEEEec
Confidence 9999999884 57888999999999 67999888765
Done!