BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009873
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 201/509 (39%), Positives = 286/509 (56%), Gaps = 60/509 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S+DY++VGGGT+GCPLAATLS+ + VL++ERG P P V F ++L Q D+ +
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 85
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
+ F+S DG+ N RGRVLGG+S IN G Y+RA +G WD +LV + YEWVE +
Sbjct: 86 VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 145
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
V+ P WQSV + LEAG+ P +G+SL+H EGT+I G+ FD G RH + +LL GN
Sbjct: 146 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 205
Query: 231 PKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
IIFSN A A G+ + S+G+ H+A++ G+V
Sbjct: 206 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFVRSK------GEV 253
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
I+SAG +G+PQLLLLSG+GP +L LNIP ++ VG+ + DNP ++ +P
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPN-- 309
Query: 351 PEPPEVVA-----------------------GVLPISS----NASRMPIAAKLAFPISKG 383
P P +V G P SS N++ A+K+A P+S G
Sbjct: 310 PIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYG 369
Query: 384 KLEL-DSTDPRQNPSIKFNYLAKEKDLHECV----KMVQLLD-------KVTKSQSVSSF 431
L L S++ R +P++KFNY + DL CV K+ +LL KV V F
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
LGI P K ++ C+ +V +++HYHGGC+VG V+D D+RV G+ LRV+DGS
Sbjct: 430 NILGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGS 488
Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
TF +P ++P +MLGRY G+K+++ER
Sbjct: 489 TFPYTPASHPQGFYLMLGRYVGIKILQER 517
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 201/509 (39%), Positives = 286/509 (56%), Gaps = 60/509 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S+DY++VGGGT+GCPLAATLS+ + VL++ERG P P V F ++L Q D+ +
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 85
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
+ F+S DG+ N RGRVLGG+S IN G Y+RA +G WD +LV + YEWVE +
Sbjct: 86 VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 145
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
V+ P WQSV + LEAG+ P +G+SL+H EGT+I G+ FD G RH + +LL GN
Sbjct: 146 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 205
Query: 231 PKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
IIFSN A A G+ + S+G+ H+A++ G+V
Sbjct: 206 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFVRSK------GEV 253
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
I+SAG +G+PQLLLLSG+GP +L LNIP ++ VG+ + DNP ++ +P
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPN-- 309
Query: 351 PEPPEVVA-----------------------GVLPISS----NASRMPIAAKLAFPISKG 383
P P +V G P SS N++ A+K+A P+S G
Sbjct: 310 PIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYG 369
Query: 384 KLEL-DSTDPRQNPSIKFNYLAKEKDLHECV----KMVQLLD-------KVTKSQSVSSF 431
L L S++ R +P++KFNY + DL CV K+ +LL KV V F
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
LGI P K ++ C+ +V +++HYHGGC+VG V+D D+RV G+ LRV+DGS
Sbjct: 430 NILGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGS 488
Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
TF +P ++P +MLGRY G+K+++ER
Sbjct: 489 TFPYTPASHPQGFYLMLGRYVGIKILQER 517
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 337 bits (864), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/510 (37%), Positives = 286/510 (56%), Gaps = 61/510 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S+DY++VGGGT+GCPLAATLS+ + VL++ERG P P + F ++L Q D+ +
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQTP 85
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
+ F+S DG+ + RGRVLGG+S IN G Y+RA +G WD +LV + Y+WVE +
Sbjct: 86 VERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQTYDWVEDTI 145
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
V+ P+ WQS+ + LEAG+LP NG+SL+H GT++ G+ FD G RH S +LL G+
Sbjct: 146 VYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNGTRHASDELLNKGD 205
Query: 231 PKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
P IIFS+N A G+ + S+G+ H+A++ G+V
Sbjct: 206 PNNLRVAVHASVEKIIFSSNSSG--VTAIGVIYKDSNGTP---HQAFVRGE------GEV 254
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
I+SAG +GSPQLLLLSG+GP +L LNIP ++ VG+ + DNP ++ +P +
Sbjct: 255 IVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPNPI 312
Query: 351 PEPPEVVAGVLPISSN-----ASRMPIAA-----------------------KLAFPISK 382
EP V VL I+SN S +P + K+ P+S
Sbjct: 313 -EPSTVT--VLGITSNFYQCSFSSLPFSIPPFAFFPNPTYPLPNSTFAHFVNKVPGPLSY 369
Query: 383 GKLELDS-TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF---------- 431
G + L+S +D R P++KFNY + DL CV ++ + ++ S ++ +
Sbjct: 370 GSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDG 429
Query: 432 ---LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDG 488
LGI P + ++ C+ V +++HYHGGC+VG V+D D+RV G+ LRV+DG
Sbjct: 430 FDILGI-PLPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVVDG 488
Query: 489 STFQESPGTNPMATVMMLGRYQGVKLVEER 518
STF SP ++P +MLGRY G K+++ER
Sbjct: 489 STFPYSPASHPQGFYLMLGRYVGSKILQER 518
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 126/506 (24%), Positives = 209/506 (41%), Gaps = 96/506 (18%)
Query: 55 DYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTD-EYTS 111
D ++VGGG+ G LAA LS++ VLL+E G P + + D +Y +
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRT 78
Query: 112 VAQSFISTDGVQNH--RGRVLGGSSAINGGFYSRAR-EDFV--------KKAGWDEELVK 160
AQ+ T G +H RGR++GGSS ++ Y R DF ++ GWDE L
Sbjct: 79 EAQA--GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL-- 134
Query: 161 KAYEWVESKVV-----------FPPELTPWQ-SVVEFGLLEAGI---LPYNGYSLE-HIE 204
++ +E + P L + S + +EAG LP LE H
Sbjct: 135 PVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLP----RLEGHNS 190
Query: 205 GTKIGGTAFD---QCGKRHTSADLLEAGNPKXXXXXXXXXXXXIIFSNNGKANESRAHG- 260
G IG T + G+R T+AD + + G+ N + G
Sbjct: 191 GEMIGVTPNSLNIRDGRRVTAAD------------------AWLTKAVRGRKNLTILTGS 232
Query: 261 -IRFIKSDGSSNHMHEAYLNKPGNSSTWGD-VILSAGALGSPQLLLLSGIGPHDHLKDLN 318
+R +K +G+ E + + G++ + D ++L AGAL SP LL+ SGIGPHD L
Sbjct: 233 RVRRLKLEGNQVRSLE-VVGRQGSAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAG 291
Query: 319 IPTIVDLQEVGEGMQDN---------------PCIAKLVDTMPQKRLPE-----PPEVV- 357
+ ++D+ ++G +QD+ P + ++M R PE+V
Sbjct: 292 VGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVV 351
Query: 358 -AGVLPISSNASRMPIAAK-------LAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDL 409
GV PI S + P A + P S+G + + + I YL +D
Sbjct: 352 GCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDR 411
Query: 410 HECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG- 468
+ ++ + ++ + + +++ E+ +V T +H G C +G
Sbjct: 412 ERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGK 471
Query: 469 ---SVVDKDYRVYGVKGLRVIDGSTF 491
+VVD + R+ + L V+D S
Sbjct: 472 DPDAVVDANLRLKALDNLFVVDASIM 497
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 37/256 (14%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-----------C 337
+V+LS GA+ +P+LL+LSGIGP HL + I +VD VGE +QD+P
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPM 323
Query: 338 IAKLVDTM------PQKRLPEPPEVVA--GVLPISSNASR---------MPIAAKLAFPI 380
+A+ P + + P+++ G +P N R + +
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHAR 383
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
S+G + L S D R P + Y + D+ V ++ ++ +++ + G +
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGSV------VDKDYRVYGVKGLRVIDGSTF 491
+ + +DE L+ + T YH G +G+V +D + RV GV GLRV D S
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503
Query: 492 QESPGTNPMATVMMLG 507
E NP TVMM+G
Sbjct: 504 PEHVTVNPNITVMMIG 519
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 32/146 (21%)
Query: 45 DVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFS 102
+++ ++ + FDYIVVGGG+ G +AA LS++ SV LVE G G P V
Sbjct: 5 NIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEV--------- 55
Query: 103 LLQTDEYTSVAQSFISTDG-----------VQNHRGRVLGGSSAING--GFYSRAREDFV 149
LQ D + + +S D +++ R +V+GG S+ N F++ RED
Sbjct: 56 -LQLDRWMELLESGYDWDYPIEPQENGNSFMRHARAKVMGGCSSHNSCIAFWA-PREDLD 113
Query: 150 K------KAGWDEELVKKAYEWVESK 169
+ GW+ E Y+ +E+
Sbjct: 114 EWEAKYGATGWNAEAAWPLYKRLETN 139
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 37/256 (14%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-----------C 337
+V+LS GA+ +P+LL+LSGIGP HL + I +VD VGE +QD+P
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPM 323
Query: 338 IAKLVDTM------PQKRLPEPPEVVA--GVLPISSNASR---------MPIAAKLAFPI 380
+A+ P + + P+++ G +P N R + +
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHAR 383
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
S+G + L S D R P + Y + D+ V ++ ++ +++ + G +
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGSV------VDKDYRVYGVKGLRVIDGSTF 491
+ + +DE L+ + T YH G +G+V +D + RV GV GLRV D S
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503
Query: 492 QESPGTNPMATVMMLG 507
E NP TVMM+G
Sbjct: 504 PEHVTVNPNITVMMIG 519
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 32/146 (21%)
Query: 45 DVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFS 102
+++ ++ + FDYIVVGGG+ G +AA LS++ SV LVE G G P V
Sbjct: 5 NIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEV--------- 55
Query: 103 LLQTDEYTSVAQSFISTDG-----------VQNHRGRVLGGSSAING--GFYSRAREDFV 149
LQ D + + +S D +++ R +V+GG S+ N F++ RED
Sbjct: 56 -LQLDRWMELLESGYDWDYPIEPQENGNSFMRHARAKVMGGCSSHNACIAFWA-PREDLD 113
Query: 150 K------KAGWDEELVKKAYEWVESK 169
+ GW+ E Y+ +E+
Sbjct: 114 EWEAKYGATGWNAEAAWPLYKRLETN 139
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 73/299 (24%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDN------------- 335
+V+LSAG++G+P LL LSGIG + L + I TIV+ VG + D+
Sbjct: 267 EVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQ 326
Query: 336 -------------------------PCIAKLVDTMPQKRLPEP-------PEVVAG---- 359
P A + + + RLP P+ AG
Sbjct: 327 TFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSA 386
Query: 360 -------------VLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKE 406
+P S M + L P+++G ++L +++P P I YL+ E
Sbjct: 387 HWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTE 446
Query: 407 KDLHECVKMVQLLDKVTKSQSVSSFLGIKP-QEKLMSNSDE--LRKLCKNNVRTFYHYHG 463
D+ ++ V+ + Q+ + F+ I+P +L +D+ + ++N T +H G
Sbjct: 447 FDIFTMIQAVKSNLRFLSGQAWADFV-IRPFDPRLRDPTDDAAIESYIRDNANTIFHPVG 505
Query: 464 GCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVE 516
+ VVD D +V GV GLR++DGS +P + + ++G+ QG L++
Sbjct: 506 TASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK-QGADLIK 563
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 26/139 (18%)
Query: 54 FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGS---------PFGNPLVTDKRFFGFS 102
FDY+VVG G G +AA L+++ SVL++E G S P P + F ++
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 103 LLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSR-AREDFVKKA------GWD 155
YT+ AQ+ + + RGR+LGGSS+++ R + EDF + A GW+
Sbjct: 63 ------YTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116
Query: 156 EELVKKAYEWVESKVVFPP 174
+ +++ ++++V PP
Sbjct: 117 WDNIQQFVR--KNEMVVPP 133
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 37/256 (14%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-----------C 337
+V+LS GA+ +P+LL+LSGIGP HL + I +VD VGE +QD+P
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPM 323
Query: 338 IAKLVDTM------PQKRLPEPPEVVA--GVLPISSNASR---------MPIAAKLAFPI 380
+A+ P + + P+++ G +P N R + +
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHAR 383
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
S+G + L S D R P + Y + D+ V ++ ++ +++ + G +
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGSV------VDKDYRVYGVKGLRVIDGSTF 491
+ + +DE L+ + T YH G +G+V +D + RV GV GLRV D S
Sbjct: 444 GVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503
Query: 492 QESPGTNPMATVMMLG 507
E NP TVMM+G
Sbjct: 504 PEHVTVNPNITVMMIG 519
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 32/146 (21%)
Query: 45 DVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFS 102
+++ ++ + FDYIVVGGG+ G +AA LS++ SV LVE G G P V
Sbjct: 5 NIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEV--------- 55
Query: 103 LLQTDEYTSVAQSFISTDG-----------VQNHRGRVLGGSSAING--GFYSRAREDFV 149
LQ D + + +S D +++ R +V+GG S+ N F++ RED
Sbjct: 56 -LQLDRWMELLESGYDWDYPIEPQENGNSFMRHARAKVMGGCSSHNSCIAFWA-PREDLD 113
Query: 150 K------KAGWDEELVKKAYEWVESK 169
+ GW+ E Y+ +E+
Sbjct: 114 EWEAKYGATGWNAEAAWPLYKRLETN 139
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Query: 37 EVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGN-PLV 93
+V + SD +VAGK++DYI+ GGG TG +AA L++N VL++E+G + ++
Sbjct: 8 DVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAII 67
Query: 94 TDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHR-----GRVLGGSSAINGGFYSRAREDF 148
D +G T+V Q++++ + N G+ LGGS+ ING S R D
Sbjct: 68 EDPNAYGQIF-----GTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGD--SWTRPDK 120
Query: 149 VKKAGWDEELVKKAYEW 165
V+ W++ + + W
Sbjct: 121 VQIDSWEKVFGMEGWNW 137
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 378 FPISKGKLELDSTDP-----RQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFL 432
P ++G + + S+DP +P N E DL +L +T ++ +
Sbjct: 433 IPFTRGSVHILSSDPYLWQFANDPKFFLN----EFDLLGQAAASKLARDLTSQGAMKEYF 488
Query: 433 G--IKPQEKLMSNS--DELRKLCKNNVRTFYHYHGGCI-----VGSVVDKDYRVYGVKGL 483
P L+ N+ + N R +H C +G VVD +VYG +GL
Sbjct: 489 AGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGL 548
Query: 484 RVIDGS 489
RVIDGS
Sbjct: 549 RVIDGS 554
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQD 334
+V+L+AG+ SP +L SGIG L N+ ++DL VG MQD
Sbjct: 288 EVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDL-PVGINMQD 332
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 42 MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGN-PLVTDKRF 98
+ +D K+V+G++ DYI+ GGG TG AA L++ N SVL++E G P++ D
Sbjct: 8 LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNA 67
Query: 99 FGFSLLQTDEY-TSVAQSFISTDGVQNHR------GRVLGGSSAINGGFYSRAREDFVKK 151
+G D + +SV ++ + + N++ G LGGS+ +NGG ++R + V
Sbjct: 68 YG------DIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS 121
Query: 152 AGWDEELVKKAYEW 165
W+ + + W
Sbjct: 122 --WETVFGNEGWNW 133
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 378 FPISKGKLELDSTDPR-QNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--I 434
P ++G + + DP + + Y E DL QL ++ S ++ ++
Sbjct: 429 LPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET 488
Query: 435 KPQEKLMSNSD--ELRKLCKNNVRTFYHYHGGCIV-----GSVVDKDYRVYGVKGLRVID 487
P + L ++D + + R YH G C + G VVD RVYGV+GLRVID
Sbjct: 489 IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVID 548
Query: 488 GS 489
GS
Sbjct: 549 GS 550
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 245 IIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304
++ S NG RA G+ F G++++++ + +V+L+AG+ SP +L
Sbjct: 253 VLLSQNGTT--PRAVGVEFGTHKGNTHNVYAKH-----------EVLLAAGSAVSPTILE 299
Query: 305 LSGIGPHDHLKDLNIPTIVDLQEVGEGMQD 334
SGIG L+ L I T+VDL VG +QD
Sbjct: 300 YSGIGMKSILEPLGIDTVVDL-PVGLNLQD 328
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 361 LPISSNASRMPIAAKLAFPISK-GKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQL- 418
P + + L PIS G++ L+S DP Q P+I N+ A + D+ + ++
Sbjct: 408 FPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFS 467
Query: 419 LDKVTKSQSVSSFLGIK-PQEKLMSNSDELRKLCKNNVRTFYHYHGGC-----IVGSVVD 472
D + K + + + P E + + E+ + + +T +H G I VVD
Sbjct: 468 YDLLFKGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVD 527
Query: 473 KDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREI 521
+V+G+K LRV D S P +V +G + E +++
Sbjct: 528 PKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHKDL 576
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCI 338
+VILS G +P+LL+LSGIGP L I TIVD + VG+ + D+P +
Sbjct: 261 EVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV 310
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 23/102 (22%)
Query: 51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERG-GSPFGNPLVT------DKR---- 97
G FD+++VGGGT G +A L++ N +VL+VE G G+P P +T D R
Sbjct: 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKY 63
Query: 98 --FFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAIN 137
+ ++++ D+Y + + N RG+ LGGSS++N
Sbjct: 64 DWAYKTTMVRRDDYERIEKP--------NTRGKTLGGSSSLN 97
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 82/300 (27%)
Query: 288 GDVILSAGALGSPQLLLLSGIGPHDHLKDLNI-PTI----------VDLQEVGEGMQDNP 336
G VILSAGA G+ ++L SGIGP D ++ + PT ++L VG QDNP
Sbjct: 246 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINL-PVGMNAQDNP 304
Query: 337 CIAKLVDTMPQKRL----------PEPPE----------VVAGVLP-------------- 362
I LV T P P P + V AG P
Sbjct: 305 SI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGF 363
Query: 363 -----------ISSNASRMPIAAKLAFPI---------SKGKLELDSTDPRQNPSIKFNY 402
+S S +P A F I S+G++ +D+ + + +
Sbjct: 364 TRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAA--LRGTVLTPPW 421
Query: 403 LAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQ--EKLMSNSDELRKLCKNNVRTFYH 460
L D + V + L D V+ S+ I P + L D N+ H
Sbjct: 422 LVNPVD--KTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNS----NH 475
Query: 461 YHGGCIVGS-----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLV 515
+ +GS VVD + +V+G L ++D P NP T+M K++
Sbjct: 476 WVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 535
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERG-------GSPFGNPLVTDKRFFGFSL-- 103
+DYI+VG G G A LS+ VLL+ERG G + P T F +
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62
Query: 104 ----LQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRARE-DFVKKAGWDEEL 158
L TD + F + G ++GG +++NG Y + DF GW
Sbjct: 63 LFESLFTD-----SNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSW 117
Query: 159 VKKA 162
A
Sbjct: 118 TNHA 121
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 82/300 (27%)
Query: 288 GDVILSAGALGSPQLLLLSGIGPHDHLKDLNI-PTI----------VDLQEVGEGMQDNP 336
G VILSAGA G+ ++L SGIGP D ++ + PT ++L VG QDNP
Sbjct: 251 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINL-PVGMNAQDNP 309
Query: 337 CIAKLVDTMPQKRL----------PEPPE----------VVAGVLP-------------- 362
I LV T P P P + V AG P
Sbjct: 310 SI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGF 368
Query: 363 -----------ISSNASRMPIAAKLAFPI---------SKGKLELDSTDPRQNPSIKFNY 402
+S S +P A F I S+G++ +D+ + + +
Sbjct: 369 TRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAA--LRGTVLTPPW 426
Query: 403 LAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQ--EKLMSNSDELRKLCKNNVRTFYH 460
L D + V + L D V+ S+ I P + L D N+ H
Sbjct: 427 LVNPVD--KTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNS----NH 480
Query: 461 YHGGCIVGS-----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLV 515
+ +GS VVD + +V+G L ++D P NP T+M K++
Sbjct: 481 WVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG-------GSPFGNPLVTDKRFFG 100
V+ +DYI+VG G G A LS+ VLL+ERG G + P T
Sbjct: 3 VSATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
Query: 101 FSL------LQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRARE-DFVKKAG 153
F + L TD + F + G ++GG +++NG Y + DF G
Sbjct: 63 FDIPGLFESLFTD-----SNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVG 117
Query: 154 WDEELVKKA 162
W A
Sbjct: 118 WPSSWTNHA 126
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
YH GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
YH GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 439 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 497
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
YH GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
YH GGC++G D RV G K L V DGS S G +P T+ L +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVERIIKQ 499
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
Y GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 443 YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 501
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
Y+ GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 441 YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
Y GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 441 YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
Y GGC++G D RV G K L V DGS S G NP T+ L +++++
Sbjct: 441 YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
YH GGC++G D RV G K L V DGS S G P T+ L +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITALAERNVERIIKQ 499
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/482 (21%), Positives = 179/482 (37%), Gaps = 82/482 (17%)
Query: 74 DNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQT-DEYTSVAQSFISTDGVQNHRGRVLGG 132
D S+ L ++ P N F GF + ++ D Y V S G++ ++GR +GG
Sbjct: 63 DKRSMWLADKTDQPVSN-------FMGFGINKSIDRYVGVLDS-ERFSGIKVYQGRGVGG 114
Query: 133 SSAINGGFYSRAREDFVKK---AGWDEELVKKAY--------------EWVESKVVFPPE 175
S +NGG + ++ ++ + E+ K + W ES +
Sbjct: 115 GSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFA 174
Query: 176 LTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKXXX 235
T ++ G A +P N Y E+++ G Q K +++ N
Sbjct: 175 RTGRKTAQRSGFTTA-FVP-NVYDFEYMKKEAAG-----QVTKSGLGGEVIYGNNAGKKS 227
Query: 236 XXXXXXXXXIIFSNNGKANESRAHGI-RFIKSDGSSNHMHEAYLNKPGNSS-----TWGD 289
+ GK + H + + + GS + +++ GN T
Sbjct: 228 LDKTYLAQA---AATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADR 284
Query: 290 VILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIA-----KLVDT 344
V +AG++G+ +LL+ + HL +L+ +VGEG +N I + D
Sbjct: 285 VFFAAGSVGTSKLLV--SMKAQGHLPNLS-------SQVGEGWGNNGNIMVGRANHMWDA 335
Query: 345 MPQKRLPEPPEVVAGVLPISSNAS-RMPIAAKLAFPISKG-----KLELDSTDPRQNPSI 398
K+ P + I + A PI A++A P+ G L L T +
Sbjct: 336 TGSKQATIP------TMGIDNWADPTAPIFAEIA-PLPAGLETYVSLYLAITKNPERARF 388
Query: 399 KFNYLAKEKDL----HECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNN 454
+FN + DL + K + + KV F I +E + +D K
Sbjct: 389 QFNSGTGKVDLTWAQSQNQKGIDMAKKV--------FDKINQKEGTIYRTDLFGVYYKTW 440
Query: 455 VRTF-YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVK 513
F YH GG ++ D R+ GL V+DGS + G NP T+ L K
Sbjct: 441 GDDFTYHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDK 500
Query: 514 LV 515
++
Sbjct: 501 II 502
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVE 82
+AG FD +V+GGG +G A L++ SVL++E
Sbjct: 9 IAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLE 43
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVE 82
+AG FD +V+GGG +G A LS+ +VL++E
Sbjct: 17 LAGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLE 51
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 25/127 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S D +++G G G LA L+D V+++ +G P+ F+ +
Sbjct: 8 SCDVLIIGSGAAGLSLALRLADQHQVIVLSKG------PVTEGSTFYAQG--------GI 53
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEW-VESKVV 171
A F TD + +H L + G R +FV + +W ++ V+
Sbjct: 54 AAVFDETDSIDSHVEDTLIAGA----GICDRHAVEFVASNA------RSCVQWLIDQGVL 103
Query: 172 FPPELTP 178
F + P
Sbjct: 104 FDTHIQP 110
>pdb|3II1|A Chain A, Structural Characterization Of Difunctional Glucanase-
Xylanse Celm2
Length = 535
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 145 REDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIE 204
R + ++ WD + + W+ KV P L W S G L A I YN + HI
Sbjct: 332 RRNRSTRSLWDPNYIDET--WINDKVQLIPRLKNWVSTYYPGTLTA-ITEYNWGAESHIN 388
Query: 205 G 205
G
Sbjct: 389 G 389
>pdb|3FW6|A Chain A, Crystal Structure Of Celm2, A Bifunctional Glucanase-
Xylanase Protein From A Metagenome Library
Length = 534
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 145 REDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIE 204
R + ++ WD + + W+ KV P L W S G L A I YN + HI
Sbjct: 332 RRNRSTRSLWDPNYIDET--WINDKVQLIPRLKNWVSTYYPGTLTA-ITEYNWGAESHIN 388
Query: 205 G 205
G
Sbjct: 389 G 389
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 25/127 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S D +++G G G LA L+D V+++ +G P+ F+ +
Sbjct: 8 SCDVLIIGSGAAGLSLALRLADQHQVIVLSKG------PVTEGSTFYAQG--------GI 53
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEW-VESKVV 171
A F TD + +H L + G R +FV + +W ++ V+
Sbjct: 54 AAVFDETDSIDSHVEDTLIAGA----GICDRHAVEFVASNA------RSCVQWLIDQGVL 103
Query: 172 FPPELTP 178
F + P
Sbjct: 104 FDTHIQP 110
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 51 GKSFDYIVVGGGTTGCPLAATL-SDNFSVLLVER 83
K FDY++VG G G LA L S VL+V+R
Sbjct: 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR 60
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 99 FGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEEL 158
GF+LL+ + YT + +G + A+ F K G+
Sbjct: 148 LGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI---------LAKRPFFTKEGYGS-- 196
Query: 159 VKKAYEWVESKVVFPPELTPWQ 180
+KK Y W + +F PE WQ
Sbjct: 197 IKKIYVWTDQDEIFLPEFQLWQ 218
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 99 FGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEEL 158
GF+LL+ + YT + +G + A+ F K G+
Sbjct: 147 LGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI---------LAKRPFFTKEGYGS-- 195
Query: 159 VKKAYEWVESKVVFPPELTPWQ 180
+KK Y W + +F PE WQ
Sbjct: 196 IKKIYVWTDQDEIFLPEFQLWQ 217
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 99 FGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEEL 158
GF+LL+ + YT + +G + A+ F K G+
Sbjct: 148 LGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI---------LAKRPFFTKEGYGS-- 196
Query: 159 VKKAYEWVESKVVFPPELTPWQ 180
+KK Y W + +F PE WQ
Sbjct: 197 IKKIYVWTDQDEIFLPEFQLWQ 218
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 99 FGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEEL 158
GF+LL+ + YT + +G + A+ F K G+
Sbjct: 148 LGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI---------LAKRPFFTKEGYGS-- 196
Query: 159 VKKAYEWVESKVVFPPELTPWQ 180
+KK Y W + +F PE WQ
Sbjct: 197 IKKIYVWTDQDEIFLPEFQLWQ 218
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDNF---SVLLVERGGSPFGN 90
KS+D I+VGGG G A L+ N +V ++E+G GN
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,067,938
Number of Sequences: 62578
Number of extensions: 687842
Number of successful extensions: 1757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1670
Number of HSP's gapped (non-prelim): 87
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)