BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009873
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 233/544 (42%), Positives = 315/544 (57%), Gaps = 96/544 (17%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S+DYIV+GGGT GCPLAATLS NFSVL++ERGG PF N V+ R F L +S
Sbjct: 62 SYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISA-SSA 120
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVF 172
+Q+F+STDGV N R RVLGG S IN GFYSRA FVK+AGWD +LVK++Y WVE ++V
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180
Query: 173 PPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPK 232
P+LT WQ + LLE G+ P+NG++ +H+ GTKIGGT FD+ G+RHT+A+LL NP+
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240
Query: 233 NLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYL-NKPGNSSTWGDVI 291
L VL+ ATV I+F +G R G+ F G + H+A L N+ G+ +VI
Sbjct: 241 KLRVLIYATVQKIVFDTSG--TRPRVTGVIFKDEKG---NQHQALLSNRKGS-----EVI 290
Query: 292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLV--------- 342
LS+GA+GSPQ+L+LSGIGP L+ L IP +++ + VG+GM DNP LV
Sbjct: 291 LSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQS 350
Query: 343 -----------------------------------------DTMPQK-RLPEPPEVVAGV 360
T+P K R PE +
Sbjct: 351 LIQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAY--- 407
Query: 361 LPISSNASRMP-------IAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECV 413
I+ N ++ I KLA+PIS+G L L +T+ NPS+ FNY DL CV
Sbjct: 408 --ITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCV 465
Query: 414 KMVQLLDKVTKSQ-------------------SVSSFLGIKPQEKLMSNSDELRKLCKNN 454
+ ++L+ KV S SV + + ++P++ ++++ + + CK+
Sbjct: 466 EAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQ--LNDTKSMAQFCKDT 523
Query: 455 VRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKL 514
V T +HYHGGC+VG VV + +V GV LRVIDGSTF ESPGTNP AT+MM+GRY GVK+
Sbjct: 524 VVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKI 583
Query: 515 VEER 518
+ ER
Sbjct: 584 LRER 587
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/505 (42%), Positives = 289/505 (57%), Gaps = 48/505 (9%)
Query: 54 FDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVA 113
+DYI+VGGGT GCPLAATLS +F VLL+ERGG P+ P V F +L + + S A
Sbjct: 54 YDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFLTTLTDVNNFDSPA 113
Query: 114 QSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKVV 171
QSFIS +GV N RGRVLGGSSAIN GFYSRA + F + +G WD V ++YEWVE +V
Sbjct: 114 QSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSSVNQSYEWVERAIV 173
Query: 172 FPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNP 231
F P+L WQ+ + LLE G+ P+NG++LEH GTKIGG+ FD+ G+RH+SADLL
Sbjct: 174 FRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGRRHSSADLLRYARS 233
Query: 232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVI 291
N+ V + ATV ++ +++ + S I + D H ++ G+VI
Sbjct: 234 SNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHALIRDR-------GEVI 286
Query: 292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIA-KLVDTMPQKR- 349
LSAGALGSPQLL LSGIGP +L IP +D VG+ + DNP +V +P +
Sbjct: 287 LSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIVPPVPMENS 346
Query: 350 -------------LPEPPEVVAGVLPISSNASRMP----------IAAKLAFPISKGKLE 386
L V+ P+ S R P I K+ P+S G L
Sbjct: 347 LIQVVGVTEDGAFLEAASNVIPFASPLHSVFIRAPASPLYVPVTTIMEKILGPVSIGLLR 406
Query: 387 LDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIK----------- 435
L STD R NP ++FNY + +DL CV + + ++ +S+++ F+ I+
Sbjct: 407 LASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQDFM-IREWFGNRRFRFV 465
Query: 436 --PQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQE 493
P SN + C+ V T +HYHGG +VG VVD D +V GV LR++DGSTF
Sbjct: 466 GAPLPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNI 525
Query: 494 SPGTNPMATVMMLGRYQGVKLVEER 518
SPGTNP AT+MMLGRY G+K++ ER
Sbjct: 526 SPGTNPQATLMMLGRYMGLKMLRER 550
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 358 bits (920), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 200/509 (39%), Positives = 293/509 (57%), Gaps = 59/509 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSP--FGNPLVTDKRFFGFSLLQTDEYT 110
S+DYI+VGGGT GCPLAATLS N+SVL++ERG P + N L++D F ++L Q D+
Sbjct: 53 SYDYIIVGGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISDG--FVYNLQQEDDGK 110
Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVES 168
+ + F+S DG+ N RGRVLGG+S IN G Y RA F + G WD +LV + YEWVE
Sbjct: 111 TPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNQTYEWVED 170
Query: 169 KVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEA 228
+VF P+ WQ+V+ LEAGILP NG+S++H+ GT++ G+ FD G RH S +LL
Sbjct: 171 TIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDNNGTRHASDELLNK 230
Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
G+P NL V + A V IIFS+N A G+ + S+G++ H+A++ G
Sbjct: 231 GDPNNLRVAVQAAVEKIIFSSNTSG--VTAIGVIYTDSNGTT---HQAFVRGE------G 279
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQK 348
+VILSAG +GSPQLLLLSG+GP +L LNI + VG+ + DNP ++ +P
Sbjct: 280 EVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYIYDNP--RNFINILPPN 337
Query: 349 RLPEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKG 383
+ V G+ LP + N + I K+ P+S G
Sbjct: 338 PIEASTVTVLGITSDFYQCSISSLPFDTPPFSFFPTTSYPLPNQTFAHIVNKVPGPLSHG 397
Query: 384 KLELD-STDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF----------- 431
+ L+ S+D R P++KFNY + DL CV ++ L +V + ++ +
Sbjct: 398 TVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGF 457
Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
LGI P + ++ C+ +V +++HYHGGC+VG V+D +RV G+ LRV+DGS
Sbjct: 458 NILGI-PLPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGS 516
Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
TF +P ++P +MLGRY G+++++ER
Sbjct: 517 TFPSTPASHPQGFYLMLGRYMGIQILQER 545
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 358 bits (918), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 198/507 (39%), Positives = 293/507 (57%), Gaps = 56/507 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S+DY++VGGGT+GCPLAATLS+ + VL++ERG P P V F ++L Q D+ +
Sbjct: 53 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 112
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
+ F+S DG+ N RGRVLGG+S IN G Y+RA +G WD +LV K YEWVE +
Sbjct: 113 VERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWDMDLVNKTYEWVEDTI 172
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
VF P PWQSV LEAG+ P +G+SL+H GT+I G+ FD G RH + +LL GN
Sbjct: 173 VFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDNKGTRHAADELLNKGN 232
Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
NL V ++A+V IIFSN A A G+ + S+G+ H A++ + G+V
Sbjct: 233 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HRAFVR------SKGEV 280
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
I+SAG +G+PQLLLLSG+GP +L LNIP ++ VG+ + DNP ++ +P +
Sbjct: 281 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPNPI 338
Query: 351 PEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKGKL 385
V G+ LP ++ N++ A+K+A P+S G L
Sbjct: 339 EPTIVTVLGISNDFYQCSFSSLPFTTPPFSFFPSTSYPLPNSTFAHFASKVAGPLSYGSL 398
Query: 386 EL-DSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF------------- 431
L S++ R +P++KFNY + DL CV ++ + ++ + ++ +
Sbjct: 399 TLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNI 458
Query: 432 LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTF 491
LGI P K ++ C+ +V +++HYHGGC+VG V+D D+RV G+ LRV+DGSTF
Sbjct: 459 LGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTF 517
Query: 492 QESPGTNPMATVMMLGRYQGVKLVEER 518
+P ++P +MLGRY G+K+++ER
Sbjct: 518 PYTPASHPQGFYLMLGRYVGIKILQER 544
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 205/509 (40%), Positives = 294/509 (57%), Gaps = 60/509 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
S+DY++VGGGT+GCPLAATLS+ + VL++ERG P P V F ++L Q D+ +
Sbjct: 53 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 112
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
+ F+S DG+ N RGRVLGG+S IN G Y+RA +G WD +LV + YEWVE +
Sbjct: 113 VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 172
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
V+ P WQSV + LEAG+ P +G+SL+H EGT+I G+ FD G RH + +LL GN
Sbjct: 173 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 232
Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
NL V ++A+V IIFSN A A G+ + S+G+ H+A++ G+V
Sbjct: 233 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFVRSK------GEV 280
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
I+SAG +G+PQLLLLSG+GP +L LNIP ++ VG+ + DNP ++ +P
Sbjct: 281 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPN-- 336
Query: 351 PEPPEVVA-----------------------GVLPISS----NASRMPIAAKLAFPISKG 383
P P +V G P +S N++ A+K+A P+S G
Sbjct: 337 PIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSASYPLPNSTFAHFASKVAGPLSYG 396
Query: 384 KLEL-DSTDPRQNPSIKFNYLAKEKDLHECV----KMVQLLD-------KVTKSQSVSSF 431
L L S++ R +P++KFNY + DL CV K+ +LL KV V F
Sbjct: 397 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 456
Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
LGI P K ++ C+ +V +++HYHGGC+VG V+D D+RV G+ LRV+DGS
Sbjct: 457 NILGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGS 515
Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
TF +P ++P +MLGRY G+K+++ER
Sbjct: 516 TFPYTPASHPQGFYLMLGRYVGIKILQER 544
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 352 bits (903), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 285/507 (56%), Gaps = 55/507 (10%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
++DYI+VGGGT GCPLAATLS N+SVL++ERG P P + F ++L Q D+ +
Sbjct: 54 TYDYIIVGGGTAGCPLAATLSANYSVLVLERGTLPTEYPNLLTSDGFIYNLQQEDDGQTP 113
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
+ F+S DG+ N RGRVLGG+S IN G Y RA F + G WD +LV K Y+WVE +
Sbjct: 114 VERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNKTYDWVEDTI 173
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
VF P+ WQ++ LE GILP NG+SL+H+EGT++ G+ FD G RH S +LL G+
Sbjct: 174 VFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRLTGSTFDNNGTRHASDELLNKGD 233
Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
P NL V ++A V IIFS++ A G+ + S+G++ H+A++ G+V
Sbjct: 234 PNNLRVAVHAAVEKIIFSSDSSG--VTAIGVIYTDSNGTT---HQAFVRGD------GEV 282
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
ILSAG +GSPQLLLLSG+G +L LNI + VG+ + DNP ++ +P +
Sbjct: 283 ILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNP--RNFINILPPNPI 340
Query: 351 PEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKGKL 385
V G+ LP S+ N + I K+ P+S G +
Sbjct: 341 EASTVTVLGITSDFYQCSISSLPFSTAPFGFFPNPTYPLPNTTFAHIVNKVPGPLSHGTV 400
Query: 386 ELDST-DPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF------------- 431
L ST D R P++ FNY + DL CV ++ + + S ++ +
Sbjct: 401 LLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGFDI 460
Query: 432 LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTF 491
LGI P + ++ C+ V +++HYHGGC+VG V+D D+RV G+ LRV+DGSTF
Sbjct: 461 LGI-PLPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTF 519
Query: 492 QESPGTNPMATVMMLGRYQGVKLVEER 518
+P ++P +MLGRY G K+++ER
Sbjct: 520 PSTPASHPQGFYLMLGRYMGTKILQER 546
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 348 bits (892), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 197/508 (38%), Positives = 295/508 (58%), Gaps = 57/508 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERG--GSPFGNPLVTDKRFFGFSLLQTDEYT 110
S+DYIV+GGGT+GCPLAATLS+ + VLL+ERG + + N L D F ++L Q D+
Sbjct: 53 SYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEYPNTLTADG--FAYNLQQQDDGK 110
Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVES 168
+ + F+S DG+ N R R+LGG++ IN G Y+RA F + G WD +LV K YEWVE
Sbjct: 111 TPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYSQTGIEWDLDLVNKTYEWVED 170
Query: 169 KVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEA 228
+V P WQSV+ G LEAGILP NG+SL+H GT++ G+ FD G RH + +LL
Sbjct: 171 AIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTGSTFDNNGTRHAADELLNK 230
Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
G+P NL+V + A+V I+FS+N + A G+ + SDG+S H+A++ GN G
Sbjct: 231 GDPNNLLVAVQASVEKILFSSN--TSNLSAIGVIYTDSDGNS---HQAFVR--GN----G 279
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQK 348
+VI+SAG +G+PQLLLLSG+GP +L LNI + VG+ + +NP ++ P
Sbjct: 280 EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNP--RNFINNFPPN 337
Query: 349 RLPEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKG 383
+ V G+ LP S+ N++ I +++ P+S G
Sbjct: 338 PIEASVVTVLGIRSDYYQVSLSSLPFSTPPFSLFPTTSYPLPNSTFAHIVSQVPGPLSHG 397
Query: 384 KLELD-STDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF-----LGIK-- 435
+ L+ S+D R P+IKFNY + DL CV ++ L + +++++ + LGI
Sbjct: 398 SVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGF 457
Query: 436 -----PQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGST 490
P + ++ C +NV +++HYHGG +VG V+D +RV G+K LRV+D ST
Sbjct: 458 NYLGVPLPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDAST 517
Query: 491 FQESPGTNPMATVMMLGRYQGVKLVEER 518
F P ++P +MLGRY G+++++ER
Sbjct: 518 FPYEPNSHPQGFYLMLGRYVGLQILQER 545
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 57/508 (11%)
Query: 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERG--GSPFGNPLVTDKRFFGFSLLQTDEYT 110
S+DYI+VGGGT+GCPLAATLS N+SVL++ERG + + N L D F ++L Q D+
Sbjct: 54 SYDYIIVGGGTSGCPLAATLSANYSVLVLERGTIATEYPNTLTVDG--FAYNLQQQDDGK 111
Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVES 168
+ + F+S DG+ N R R+LGG++ IN G Y+RA E F +G WD +LV +AYEWVE
Sbjct: 112 TPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVED 171
Query: 169 KVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEA 228
+V+ P WQS+ LEAG+ P NG+ L H EGT++ G+ FD G RH S +LL
Sbjct: 172 AIVYKPSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDNSGTRHASDELLNK 231
Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
G+P NL V + A V IIFS +++ A G+ + S+G+S H A + S G
Sbjct: 232 GDPDNLKVAVEAAVQKIIFST--ESSGLTAVGVVYTDSNGTS---HRALV------SGKG 280
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQK 348
+VILSAG LG+PQLLLLSG+GP +L LNI + VG+ + DNP ++ +P
Sbjct: 281 EVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVASHPYVGQYVNDNP--RNFINILPPN 338
Query: 349 RLPEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKG 383
+ V G+ LP + N + I +K+ P+S G
Sbjct: 339 PIEPSTVTVLGITSDFYQCSLSSLPFDTPPFSLFPTTSYPLPNQTFAHIVSKVPGPLSAG 398
Query: 384 KLELD-STDPRQNPSIKFNYLAKEKDLHECVKMVQ-----LLDKVTKSQSVSSFLGI--- 434
L L S++ P++KFNY + DL CV ++ L K V GI
Sbjct: 399 SLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGF 458
Query: 435 ----KPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGST 490
P + ++ K C++ V +++HYHGG IVG V+D ++RV G+ LRV+DGST
Sbjct: 459 NILGTPLPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGST 518
Query: 491 FQESPGTNPMATVMMLGRYQGVKLVEER 518
F +P ++P +MLGRY G K+V+ER
Sbjct: 519 FPATPASHPQGFYLMLGRYVGTKIVQER 546
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 150/548 (27%), Positives = 234/548 (42%), Gaps = 128/548 (23%)
Query: 54 FDYIVVGGGTTGCPLAATLSDNFSV--LLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT- 110
FDYIVVGGG+ GC LAA LS+N SV L+E G +PL+ GF+ + T +T
Sbjct: 5 FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDT-HPLI--HMPVGFAKMTTGPHTW 61
Query: 111 ---SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR-EDFVKKA-----GWDEELVKK 161
+ Q + + +GR+LGG S+IN ++R DF + A GW V+K
Sbjct: 62 DLLTEPQKHANNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQK 121
Query: 162 AYEWVESKVVF--------------------PPELTPWQSVVEFGLLEAGILPYN-GYSL 200
+ E VF P QS E GL PYN ++
Sbjct: 122 YFIRSEGNAVFSGTWHGTNGPLGVSNLAEPNPTSRAFVQSCQEMGL------PYNPDFNG 175
Query: 201 EHIEGTKIGGTAFDQCGKRHTSADLLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAH 259
EG I + T+ L A KNL V+ A V I+F N +RA
Sbjct: 176 ASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVF------NGTRAT 229
Query: 260 GIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNI 319
G+++I ++G+ N + +++++AGA+G+P+L++LSG+GP HL++ I
Sbjct: 230 GVQYI-ANGTLNTAEASQ-----------EIVVTAGAIGTPKLMMLSGVGPAAHLRENGI 277
Query: 320 PTIVDLQEVGEGMQDN-------------------------------------PCIAKLV 342
P + DL VGE +QD+ P + +V
Sbjct: 278 PVVQDLPGVGENLQDHFGVDIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASNVV 337
Query: 343 D------TMPQKRLPE-------PPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDS 389
+ + P +P+ AGV + AS + + + + P S+G + L S
Sbjct: 338 EGGAFWYSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTVRLRS 397
Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSS-------FLGIKPQEKLMS 442
DPR NP + N+L DL + V+L ++ S+ F G +P ++
Sbjct: 398 ADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKHIRKTCFFSGKQPTMQM-- 455
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
R + + RT YH C +G SVVD +V+G++G+R+ D S G+N
Sbjct: 456 ----YRDYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSN 511
Query: 499 PMATVMML 506
A +M+
Sbjct: 512 TNAATIMI 519
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 143/538 (26%), Positives = 236/538 (43%), Gaps = 102/538 (18%)
Query: 54 FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
FDYI++G G+ G LA L+++ SVLL+E GG + T LQ Y
Sbjct: 5 FDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 64
Query: 112 VAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELVK 160
++ ++ ++ RG+ LGGSS ING Y R +++ K G W
Sbjct: 65 AYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCL 124
Query: 161 KAYEWVESKVVFPPEL----------TP-------WQSVVEFGLLEAGILPYNGYSLEHI 203
+ ES+ + P + TP + ++VE G+ +AG + +
Sbjct: 125 PYFRKAESRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGV-QAGYPRTDDLNGYQQ 183
Query: 204 EGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGI 261
EG G+R ++A L +A NL ++ +AT + I+F +GK RA G+
Sbjct: 184 EGFGPMDRTVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILF--DGK----RASGV 237
Query: 262 RFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPT 321
++ G++N EA + +V+L AGA+ SPQ+L SG+GP L++L+I
Sbjct: 238 SYLI--GNANDATEARARR--------EVLLCAGAIASPQILQRSGVGPAALLRELDIAL 287
Query: 322 IVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEP--------------------- 353
+ +L VG+ +QD+ C + K L +P
Sbjct: 288 VHELPGVGQNLQDHLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEA 347
Query: 354 ------------PEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDSTDPR 393
P + LP++ N + + F S+G+++L S DPR
Sbjct: 348 GGFIRTRPEFAWPNIQFHFLPVAINYNGSNAVNEHGFQAHVGSMRSPSRGRIQLKSKDPR 407
Query: 394 QNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSD-ELRKLCK 452
Q+PSI FNY++ E+D E +++ ++ ++ S+ G + + SD EL +
Sbjct: 408 QHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISPGIDCQSDAELDAFIR 467
Query: 453 NNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+ T +H C +G +VVD RV+GV+GLRV+D S E N AT +M+
Sbjct: 468 EHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGNLNATTIMM 525
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 146/549 (26%), Positives = 241/549 (43%), Gaps = 116/549 (21%)
Query: 49 VAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQT 106
+A K +DYI++G G+ G LA L+++ +VLL+E GG + T LQ
Sbjct: 1 MAAKEYDYIIIGAGSAGNVLATRLTEDRDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQG 60
Query: 107 DEYTSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKA 162
Y ++ F++ ++ RG+ LGGSS ING Y R + + GW E +
Sbjct: 61 RRYNWAYETDPEPFMNNRRMECGRGKGLGGSSLINGMCYIRG--NALDYDGWAERKGLEN 118
Query: 163 YEWVESKVVF------------------PPELTPWQSVVE---FGLLEAGILP------- 194
+ +++ F P +T + V ++EAG+
Sbjct: 119 WTYLDCLPYFRKAETRDAGANDYHGGDGPVHVTTSKRGVNPLFEAMVEAGVQAGYPRTDD 178
Query: 195 YNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLEAGNPK-NLVVLLNATVNNIIFSNNGK 252
NGY E TA G+R ++A L+ P+ NL ++ AT + I+FS
Sbjct: 179 LNGYQQEGFGPMDRTVTA---NGRRASTARGYLDQARPRPNLTIVTYATTDRILFSGK-- 233
Query: 253 ANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHD 312
RA G+ ++ DG + A +V+L +GA+ SPQ+L SG+GP
Sbjct: 234 ----RAQGVVYL--DGQAQITAHARR----------EVLLCSGAIASPQILQRSGVGPGG 277
Query: 313 HLKDLNIPTIVDLQEVGEGMQDN-------PCI-------AKLVDTMP------------ 346
L+DL+IP ++DL VG+ +QD+ C A L+ P
Sbjct: 278 WLRDLDIPVVLDLPGVGQNLQDHLEMYMQYECKEPVSLYPALLLRNQPAIGIEWMLKGTG 337
Query: 347 -------------QKRLPEP-PEVVAGVLPIS-----SNASRM----PIAAKLAFPISKG 383
+ R +P P + LP++ +NA +M + P S+G
Sbjct: 338 IGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGTNAIKMHGFQAHVGSMRSP-SRG 396
Query: 384 KLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLM 441
+++L S DPR++PSI FNY+A+ D E +++ ++ ++ F G + P +L
Sbjct: 397 RVKLRSRDPREHPSILFNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELSPGAELQ 456
Query: 442 SNSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGT 497
S++ ++ + T YH C +G +VVD + RV+G++GLRV+D S
Sbjct: 457 SDA-QIDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVHGLEGLRVVDASIMPRITTG 515
Query: 498 NPMATVMML 506
N A +ML
Sbjct: 516 NLNAPTIML 524
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 149/548 (27%), Positives = 238/548 (43%), Gaps = 118/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
K FDYI+VG G+ G LA L+++ SVLL+E GG + T LQ Y
Sbjct: 3 KEFDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRARE-DFVKKAGWDEELVKKAYE 164
++ F+ ++ RG+ LGGSS ING Y R DF GW E + +
Sbjct: 63 NWAYETDPEPFMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDF---DGWAE--LPGLED 117
Query: 165 W-----------VESKVVFPPELTPWQSVVEFGLLEAGILPY----------NGY-SLEH 202
W E++ + P + + V +AG P GY E
Sbjct: 118 WTYLDCLPYFRKAETRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGYPRTED 177
Query: 203 IEGTKIGG-----TAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANE 255
+ G + G + + G+R ++A L +A NL ++ +A + ++F +GK
Sbjct: 178 LNGYQQEGFGPMDRSVTKKGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLF--DGK--- 232
Query: 256 SRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLK 315
RA G+ ++ D S EA K +VI+S+GA+ SPQLL SG+GP L+
Sbjct: 233 -RAVGVTYLVGD--SEERVEARARK--------EVIVSSGAIASPQLLQRSGVGPRALLE 281
Query: 316 DLNIPTIVDLQEVGEGMQDN------------------------PCIAK----------- 340
L+IP + DL VGE +QD+ P I
Sbjct: 282 SLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGA 341
Query: 341 --------LVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGK 384
+ T P+ + P + LP++ N + + F ++G+
Sbjct: 342 SNQFEAGGFIRTRPEFKWPN---IQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGR 398
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++ S DPRQ+PSI FNY++ E+D E ++L ++ ++ +F G I P + +
Sbjct: 399 IQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDAFRGREISPGAHVQT 458
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
+ +EL K + + T +H C +G+ VVD + RV+G++GLRV+D S N
Sbjct: 459 D-EELDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMQGLRVVDASIMPLIITGN 517
Query: 499 PMATVMML 506
AT +M+
Sbjct: 518 LNATTIMI 525
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 149/552 (26%), Positives = 241/552 (43%), Gaps = 126/552 (22%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ FDYI+VG G+ G LA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 QEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRARE-DFVKKAGWDEELVKKAYE 164
++ ++ ++ RG+ LGGSS ING Y R DF GW E + +
Sbjct: 63 NWAYETDPEPYMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDF---DGWAE--LPGLED 117
Query: 165 W-----------VESKVVFPPEL----------TP-------WQSVVEFGLLEAG---IL 193
W E++ + P + TP + ++VE G+ +AG
Sbjct: 118 WTYLDCLPYFRKAETRDIGPNDYHGGDGPVSVATPKAGNNPLFHAMVEAGV-QAGYPRTE 176
Query: 194 PYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNG 251
NGY EG + + G+R ++A L +A NL ++ +A + ++F +G
Sbjct: 177 DLNGY---QQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLF--DG 231
Query: 252 KANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPH 311
K RA G+ ++ D S EA K +VI+S+GA+ SPQLL SG+GP
Sbjct: 232 K----RAVGVTYLVGD--SEERVEARARK--------EVIVSSGAIASPQLLQRSGVGPR 277
Query: 312 DHLKDLNIPTIVDLQEVGEGMQDN------------------------PCIAK------- 340
L+ L+IP + DL VGE +QD+ P I
Sbjct: 278 ALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGT 337
Query: 341 ------------LVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPI-------- 380
+ T P+ + P + LP++ N + + F
Sbjct: 338 GIGASNQFEAGGFIRTRPEFKWPN---IQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSP 394
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQE 438
++G+++ S DPRQ+PSI FNY++ E+D E ++L ++ ++ + G I P
Sbjct: 395 ARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGA 454
Query: 439 KLMSNSDELRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQES 494
+ ++ +EL K + + T +H C +G+ VVD + RV+G+KGLRV+D S
Sbjct: 455 HVQTD-EELDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLI 513
Query: 495 PGTNPMATVMML 506
N AT +M+
Sbjct: 514 ITGNLNATTIMI 525
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 237/551 (43%), Gaps = 124/551 (22%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ FDYI+VG G+ G LA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 QEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRARE-DFVKKAGWDEELVKKAYE 164
++ ++ ++ RG+ LGGSS ING Y R DF GW E + +
Sbjct: 63 NWAYETDPEPYMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDF---DGWAE--LPGLED 117
Query: 165 W-----------VESKVVFPPELTPWQSVVEF------------GLLEAGILP------- 194
W E++ + P + + V ++EAG+
Sbjct: 118 WTYLDCLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTED 177
Query: 195 YNGYSLEHIEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGK 252
NGY EG + G+R ++A L +A NL ++ +A + ++F +GK
Sbjct: 178 LNGY---QQEGFGPMDRTVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLF--DGK 232
Query: 253 ANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHD 312
RA G+ ++ D S EA K +VI+S+GA+ SPQLL SG+GP
Sbjct: 233 ----RAIGVTYLVGD--SEERVEARARK--------EVIVSSGAIASPQLLQRSGVGPRA 278
Query: 313 HLKDLNIPTIVDLQEVGEGMQDN------------------------PCIAK-------- 340
L+ L+IP + DL VGE +QD+ P I
Sbjct: 279 LLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFNGTG 338
Query: 341 -----------LVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPI--------S 381
+ T P+ + P + LP++ N + + F +
Sbjct: 339 IGASNQFEAGGFIRTRPEFKWPN---IQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPA 395
Query: 382 KGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEK 439
+G++++ S DPRQ+PSI FNY++ E+D E ++L ++ ++ + G I P
Sbjct: 396 RGRIQVKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGAD 455
Query: 440 LMSNSDELRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESP 495
+ ++ ++L K + + T +H C +G+ VVD + RV+G+KGLRV+D S
Sbjct: 456 VQTD-EQLDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLII 514
Query: 496 GTNPMATVMML 506
N AT +M+
Sbjct: 515 TGNLNATTIMI 525
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 141/545 (25%), Positives = 231/545 (42%), Gaps = 114/545 (20%)
Query: 54 FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
FDYI++G G+ G LA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDSDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 62
Query: 112 VAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELVK 160
++ +++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 63 AYETEPEPYMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAQQPGLERWTYLDCL 122
Query: 161 KAYEWVESKVVF---------PPELT---PWQSVVEFGLLEAGILP-------YNGYSLE 201
Y E++ + P +T P + + ++EAG+ NGY E
Sbjct: 123 PYYRKSETRDIGANDYHGGDGPVSITTCKPGNNPLFAAMIEAGVQAGYPRTDDLNGYQQE 182
Query: 202 HIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANE 255
G D+ G+R ++A L A NL ++ +AT + I+F N
Sbjct: 183 -------GFGPMDRFVTPKGRRSSTARGYLDTAKQRPNLKIITHATTDRILFEN------ 229
Query: 256 SRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLK 315
RA G+ ++ G+SN E + + +V+L AGA+ SPQ+L SG+G + LK
Sbjct: 230 KRAVGVAYLH--GASNTPQEVHARR--------EVLLCAGAIASPQILQRSGVGNAELLK 279
Query: 316 DLNIPTIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEP--------------- 353
+IP + DL VGE +QD+ C + K +P
Sbjct: 280 QFDIPVVHDLPGVGENLQDHLEMYLQYECKEPVSLYPALKWWNQPKIGAEWLFNGTGIGA 339
Query: 354 ------------------PEVVAGVLPISSNASRMPIAAKLAFPISKGKL--------EL 387
P + LP++ N + F G + +
Sbjct: 340 SNHFEGGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVEAHGFQCHVGSMRSPSRGHVRI 399
Query: 388 DSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE- 446
S DP Q+P+I FNY++ E+D E +++ ++ ++ F G + + +DE
Sbjct: 400 KSRDPHQHPAILFNYMSHEQDWQEFRDAIRITRQIINQPALDKFRGREISPGIDCQTDEQ 459
Query: 447 LRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMAT 502
L + +N+ T YH G C +GS VVD + RV+G++GLRV+D S N AT
Sbjct: 460 LDEFVRNHAETAYHPCGTCKMGSDEMAVVDDEGRVHGLEGLRVVDASIMPLIITGNLNAT 519
Query: 503 VMMLG 507
+M+G
Sbjct: 520 TIMIG 524
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/541 (25%), Positives = 240/541 (44%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAG-VQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 240/541 (44%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGSAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ DL VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHDLPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G +VVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 239/541 (44%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESK----------------VVFPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 239/541 (44%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESK----------------VVFPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 239/541 (44%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESK----------------VVFPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 242/542 (44%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAG-VQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 242/542 (44%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAG-VQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 242/542 (44%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAG-VQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 242/542 (44%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAG-VQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 242/542 (44%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAG-VQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
LP++ N + + F S+G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 145/548 (26%), Positives = 236/548 (43%), Gaps = 118/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ FDYI+VG G+ G LA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 QEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRARE-DFVKKAGWDEELVKKAYE 164
++ + ++ RG+ LGGSS ING Y R DF GW E + +
Sbjct: 63 NWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDF---DGWAE--LPGLQD 117
Query: 165 W-----------VESKVVFPPELTPWQSVVEFGLLEAGILPY----------NGY-SLEH 202
W E++ + P + + V +AG P GY E
Sbjct: 118 WTYLDCLPYFRKAETRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGYPRTED 177
Query: 203 IEGTKIGG-----TAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANE 255
+ G + G + + G+R ++A L +A NL ++ +A + ++F +GK
Sbjct: 178 LNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLF--DGK--- 232
Query: 256 SRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLK 315
RA G+ ++ D S EA K +VI+S+GA+ SPQLL SG+GP L+
Sbjct: 233 -RAVGVTYLVGD--SEERVEARARK--------EVIVSSGAIASPQLLQRSGVGPRALLE 281
Query: 316 DLNIPTIVDLQEVGEGMQDN------------------------PCIAK----------- 340
L+IP + DL VGE +QD+ P I
Sbjct: 282 SLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFKGTGIGA 341
Query: 341 --------LVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGK 384
+ T P+ + P + LP++ N + + F ++G+
Sbjct: 342 SNQFEAGGFIRTRPEFKWPN---IQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGR 398
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++ S DPRQ+PSI FNY++ E+D E ++L ++ ++ + G I P + +
Sbjct: 399 IQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGADVQT 458
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
+ ++L K + + T +H C +G+ VVD + RV+G+KGLRV+D S N
Sbjct: 459 D-EQLDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLIITGN 517
Query: 499 PMATVMML 506
AT +M+
Sbjct: 518 LNATTIMI 525
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 139/542 (25%), Positives = 238/542 (43%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ K+ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF + RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF------DCKRAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ DL VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHDLPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPISKGKL--------ELDSTD 391
LP++ N + + F G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 139/542 (25%), Positives = 238/542 (43%), Gaps = 106/542 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N SVLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ K+ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF + RA G
Sbjct: 181 QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIF------DCKRAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ DL VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHDLPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPISKGKL--------ELDSTD 391
LP++ N + + F G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRK 449
P Q+P+I FNY++ E+D E +++ ++ ++ + G I P + ++ ++L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTD-EQLDE 462
Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M
Sbjct: 463 FVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIM 522
Query: 506 LG 507
+G
Sbjct: 523 IG 524
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 139/548 (25%), Positives = 231/548 (42%), Gaps = 118/548 (21%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ +++ ++ RG+ LGGSS ING Y R +++ K+ G W
Sbjct: 62 WAYETEPEPYMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHWSYLDC 121
Query: 160 KKAYEWVESKVVFPPEL------------TPWQSVVEFGLLEAGILP-------YNGYSL 200
Y E++ + P + P + + ++EAG+ NGY
Sbjct: 122 LPYYRKAETRDIGPNDYHGGDGPVSVTTPKPGNNPLFEAMVEAGVQAGYPRTDDLNGYQQ 181
Query: 201 EHIEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRA 258
E + T Q G+R ++A L +A NL + +A ++IIF+ RA
Sbjct: 182 EGF--GPMDRTVTPQ-GRRASTARGYLDQARGRPNLTIRTHALTDHIIFAG------KRA 232
Query: 259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLN 318
G+ ++ +G S +A NK +V+L AGA+ SPQ+L SG+G + L+ +
Sbjct: 233 VGVEWL--EGESTIPSKATANK--------EVLLCAGAIASPQILQRSGVGNPELLRQFD 282
Query: 319 IPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEP------------------------- 353
IP + DL VGE +QD+ ++ Q EP
Sbjct: 283 IPVVHDLPGVGENLQDH------LEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTG 336
Query: 354 ---------------------PEVVAGVLPISSNASRMPIAAKLAFPISKGKL------- 385
P + LP++ N + + F G +
Sbjct: 337 IGASNQFEAGGFIRSRAEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGH 396
Query: 386 -ELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNS 444
L S DP +P+I FNY++ E+D E +++ ++ ++ + G + + S
Sbjct: 397 VRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGIECQS 456
Query: 445 D-ELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNP 499
D EL + +N+ T +H G C +G +VVD + RV+G++GLRV+D S + N
Sbjct: 457 DAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNL 516
Query: 500 MATVMMLG 507
AT +M+G
Sbjct: 517 NATTIMIG 524
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 223/529 (42%), Gaps = 114/529 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ +DYI+VG G+ G LA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 QEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ ++ ++ RG+ LGGSS ING Y R + + K G W
Sbjct: 63 NWAYETDPEPHMNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTYLD 122
Query: 159 VKKAYEWVESKVVFPPELTPWQSVVEF------------GLLEAGILP-------YNGYS 199
+ E++ + P + + V ++EAG+ NGY
Sbjct: 123 CLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQ 182
Query: 200 LEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKA 253
E G D+ G+R ++A L A L ++ +A + I+F
Sbjct: 183 QE-------GFGPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFEGK--- 232
Query: 254 NESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDH 313
RA G+ +++ GS+ EA K +VI+S+GA+ SPQLL SG+GP
Sbjct: 233 ---RAVGVSYLQ--GSTEERVEARARK--------EVIVSSGAIASPQLLQRSGVGPRAL 279
Query: 314 LKDLNIPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP--------------------- 351
L+ L+IP + DL VGE +QD+ + T P P
Sbjct: 280 LESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGI 339
Query: 352 ------------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKL 385
E P + LP++ N + + F S+G++
Sbjct: 340 GASNQFEAGGFIRTREEFEWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRV 399
Query: 386 ELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSD 445
+L S DPRQ+PSI FNY+A E+D E ++L ++ + ++ F G + + +D
Sbjct: 400 QLKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEVQTD 459
Query: 446 E-LRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGS 489
E L K + + T +H C +G+ VVD RV+G++GLRV+D S
Sbjct: 460 EQLDKFVREHAETAFHPSCSCKMGTDDMAVVDGQGRVHGMQGLRVVDAS 508
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 232/548 (42%), Gaps = 117/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
K +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 4 KEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRY 63
Query: 110 T----SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
+ + ++ ++ RG+ LGGSS ING Y R E + G W
Sbjct: 64 NWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTYAD 123
Query: 159 VKKAYEWVESKVVFPPEL----------TP--WQSVVEFGLLEAGILP-------YNGYS 199
Y+ E++ + + TP +V+ ++EAG+ NGY
Sbjct: 124 CLPYYKKAETRDIGGNDYHGDSGPVSVATPKNGNNVLFHAMVEAGVQAGYPRTDDLNGYQ 183
Query: 200 LEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKA 253
E G D+ G+R ++A L A NL +L +AT N I+F
Sbjct: 184 QE-------GFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILF------ 230
Query: 254 NESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDH 313
N+ +A G+ +I N++ A + + +V+L AGA+ SPQ+L SG+G
Sbjct: 231 NQKQAIGVEYIIG-ADQNNLQRALVKR--------EVLLCAGAIASPQILQRSGVGQSTF 281
Query: 314 LKDLNIPTIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEV---------- 356
LK ++I + DL VGE +QD+ C + V P + P +
Sbjct: 282 LKSMDIDVVHDLPGVGENLQDHLEMYLQYKC-KQPVSLYPALKWYNQPAIGAEWLFNGTG 340
Query: 357 -------VAGVLPISSNASRMPIAAKLAFPI-------------------------SKGK 384
AG SS+ + P P+ S+G+
Sbjct: 341 IGASNQFEAGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGR 400
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++L S DP +PSI FNY++ E+D E +++ ++ ++ + G I P + L +
Sbjct: 401 IKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISPGKHLQT 460
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
++ EL +N+ T YH C +G +VVD RV+G+ GLRV+D S N
Sbjct: 461 DA-ELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGN 519
Query: 499 PMATVMML 506
AT +M+
Sbjct: 520 LNATTIMI 527
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 232/548 (42%), Gaps = 117/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
K +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 4 KEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRY 63
Query: 110 T----SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
+ + ++ ++ RG+ LGGSS ING Y R E + G W
Sbjct: 64 NWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTYAD 123
Query: 159 VKKAYEWVESKVVFPPEL----------TP--WQSVVEFGLLEAGILP-------YNGYS 199
Y+ E++ + + TP +V+ ++EAG+ NGY
Sbjct: 124 CLPYYKKAETRDIGGNDYHGDSGPVSVATPKNGNNVLFHAMVEAGVQAGYPRTDDLNGYQ 183
Query: 200 LEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKA 253
E G D+ G+R ++A L A NL +L +AT N I+F
Sbjct: 184 QE-------GFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILF------ 230
Query: 254 NESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDH 313
N+ +A G+ +I N++ A + + +V+L AGA+ SPQ+L SG+G
Sbjct: 231 NQKQAIGVEYIIG-ADQNNLQRALVKR--------EVLLCAGAIASPQILQRSGVGQSTF 281
Query: 314 LKDLNIPTIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEV---------- 356
LK ++I + DL VGE +QD+ C + V P + P +
Sbjct: 282 LKSMDIDVVHDLPGVGENLQDHLEMYLQYKC-KQPVSLYPALKWYNQPAIGAEWLFNGTG 340
Query: 357 -------VAGVLPISSNASRMPIAAKLAFPI-------------------------SKGK 384
AG SS+ + P P+ S+G+
Sbjct: 341 IGASNQFEAGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGR 400
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++L S DP +PSI FNY++ E+D E +++ ++ ++ + G I P + L +
Sbjct: 401 IKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISPGKHLQT 460
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
++ EL +N+ T YH C +G +VVD RV+G+ GLRV+D S N
Sbjct: 461 DA-ELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGN 519
Query: 499 PMATVMML 506
AT +M+
Sbjct: 520 LNATTIMI 527
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 232/548 (42%), Gaps = 117/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
K +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 4 KEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRY 63
Query: 110 T----SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
+ + ++ ++ RG+ LGGSS ING Y R E + G W
Sbjct: 64 NWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTYAD 123
Query: 159 VKKAYEWVESKVVFPPEL----------TP--WQSVVEFGLLEAGILP-------YNGYS 199
Y+ E++ + + TP +V+ ++EAG+ NGY
Sbjct: 124 CLPYYKKAETRDIGGNDYHGDSGPVSVATPKNGNNVLFHAMVEAGVQAGYPRTDDLNGYQ 183
Query: 200 LEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKA 253
E G D+ G+R ++A L A NL +L +AT N I+F
Sbjct: 184 QE-------GFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILF------ 230
Query: 254 NESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDH 313
N+ +A G+ +I N++ A + + +V+L AGA+ SPQ+L SG+G
Sbjct: 231 NQKQAIGVEYIIG-ADQNNLQRALVKR--------EVLLCAGAIASPQILQRSGVGQSTF 281
Query: 314 LKDLNIPTIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEV---------- 356
LK ++I + DL VGE +QD+ C + V P + P +
Sbjct: 282 LKSMDIDVVHDLPGVGENLQDHLEMYLQYKC-KQPVSLYPALKWYNQPAIGAEWLFNGTG 340
Query: 357 -------VAGVLPISSNASRMPIAAKLAFPI-------------------------SKGK 384
AG SS+ + P P+ S+G+
Sbjct: 341 IGASNQFEAGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGR 400
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++L S DP +PSI FNY++ E+D E +++ ++ ++ + G I P + L +
Sbjct: 401 IKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISPGKHLQT 460
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
++ EL +N+ T YH C +G +VVD RV+G+ GLRV+D S N
Sbjct: 461 DA-ELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGN 519
Query: 499 PMATVMML 506
AT +M+
Sbjct: 520 LNATTIMI 527
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 232/548 (42%), Gaps = 117/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
K +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 4 KEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRY 63
Query: 110 T----SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
+ + ++ ++ RG+ LGGSS ING Y R E + G W
Sbjct: 64 NWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTYAD 123
Query: 159 VKKAYEWVESKVVFPPEL----------TP--WQSVVEFGLLEAGILP-------YNGYS 199
Y+ E++ + + TP +V+ ++EAG+ NGY
Sbjct: 124 CLPYYKKAETRDIGGNDYHGDSGPVSVATPKNGNNVLFHAMVEAGVQAGYPRTDDLNGYQ 183
Query: 200 LEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKA 253
E G D+ G+R ++A L A NL +L +AT N I+F
Sbjct: 184 QE-------GFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILF------ 230
Query: 254 NESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDH 313
N+ +A G+ +I N++ A + + +V+L AGA+ SPQ+L SG+G
Sbjct: 231 NQKQAIGVEYIIG-ADQNNLQRALVKR--------EVLLCAGAIASPQILQRSGVGQSTF 281
Query: 314 LKDLNIPTIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEV---------- 356
LK ++I + DL VGE +QD+ C + V P + P +
Sbjct: 282 LKSMDIDVVHDLPGVGENLQDHLEMYLQYKC-KQPVSLYPALKWYNQPAIGAEWLFNGTG 340
Query: 357 -------VAGVLPISSNASRMPIAAKLAFPI-------------------------SKGK 384
AG SS+ + P P+ S+G+
Sbjct: 341 IGASNQFEAGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGR 400
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++L S DP +PSI FNY++ E+D E +++ ++ ++ + G I P + L +
Sbjct: 401 IKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISPGKHLQT 460
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
++ EL +N+ T YH C +G +VVD RV+G+ GLRV+D S N
Sbjct: 461 DA-ELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGN 519
Query: 499 PMATVMML 506
AT +M+
Sbjct: 520 LNATTIMI 527
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 232/548 (42%), Gaps = 117/548 (21%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
K +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 4 KEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRY 63
Query: 110 T----SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
+ + ++ ++ RG+ LGGSS ING Y R E + G W
Sbjct: 64 NWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTYAD 123
Query: 159 VKKAYEWVESKVVFPPEL----------TP--WQSVVEFGLLEAGILP-------YNGYS 199
Y+ E++ + + TP +V+ ++EAG+ NGY
Sbjct: 124 CLPYYKKAETRDIGGNDYHGDSGPVSVATPKNGNNVLFHAMVEAGVQAGYPRTDDLNGYQ 183
Query: 200 LEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKA 253
E G D+ G+R ++A L A NL +L +AT N I+F
Sbjct: 184 QE-------GFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILF------ 230
Query: 254 NESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDH 313
N+ +A G+ +I N++ A + + +V+L AGA+ SPQ+L SG+G
Sbjct: 231 NQKQAIGVEYIIG-ADQNNLQRALVKR--------EVLLCAGAIASPQILQRSGVGQSTF 281
Query: 314 LKDLNIPTIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEV---------- 356
LK ++I + DL VGE +QD+ C + V P + P +
Sbjct: 282 LKSMDIDVVHDLPGVGENLQDHLEMYLQYKC-KQPVSLYPALKWYNQPAIGAEWLFNGTG 340
Query: 357 -------VAGVLPISSNASRMPIAAKLAFPI-------------------------SKGK 384
AG SS+ + P P+ S+G+
Sbjct: 341 IGASNQFEAGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGR 400
Query: 385 LELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
++L S DP +PSI FNY++ E+D E +++ ++ ++ + G I P + L +
Sbjct: 401 IKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISPGKHLQT 460
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
++ EL +N+ T YH C +G +VVD RV+G+ GLRV+D S N
Sbjct: 461 DA-ELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGN 519
Query: 499 PMATVMML 506
AT +M+
Sbjct: 520 LNATTIMI 527
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 141/533 (26%), Positives = 229/533 (42%), Gaps = 122/533 (22%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ FDYI+VG G+ G LA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 QEFDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ + ++ RG+ LGGSS ING Y R + + K G W
Sbjct: 63 NWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLD 122
Query: 159 VKKAYEWVESKVVFPPEL----------TP-------WQSVVEFGLLEAG---ILPYNGY 198
+ E++ + P + TP + ++VE G+ +AG NGY
Sbjct: 123 CLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGV-QAGYPRTEDLNGY 181
Query: 199 SLEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGK 252
E G D+ G+R ++A L A L ++ +A + ++F
Sbjct: 182 QQE-------GFGPMDRTVTPNGRRASTARGYLDVAKKRSTLTIVTHALTDKVLFEGK-- 232
Query: 253 ANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHD 312
RA G+R++ G++ EA K +VI+ +GA+ SPQLL SG+GP
Sbjct: 233 ----RAVGVRYLV--GAAEERVEARARK--------EVIVCSGAIASPQLLQRSGVGPAK 278
Query: 313 HLKDLNIPTIVDLQEVGEGMQDN------------------------PCIAK-------- 340
L+ L+IP + DL VGE +QD+ P I
Sbjct: 279 LLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTG 338
Query: 341 -----------LVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPI--------S 381
+ T P+ E P + LP++ N + + F S
Sbjct: 339 IGASNQFEAGGFIRTRPEF---EWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPS 395
Query: 382 KGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLM 441
+G++++ S DPRQ+PSI FNY+A E+D E ++L ++ + ++ +F G + +
Sbjct: 396 RGRVQVKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDAFRGREISPGIE 455
Query: 442 SNSDE-LRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGS 489
+DE L K + + T +H C +G+ VVD + RV+G++GLRV+D S
Sbjct: 456 VQTDEQLDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMQGLRVVDAS 508
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 138/549 (25%), Positives = 232/549 (42%), Gaps = 120/549 (21%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ +++ ++ RG+ LGGSS ING Y R +++ K+ G W
Sbjct: 62 WAYETEPEPYMNHRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHWSYLDC 121
Query: 160 KKAYEWVESKVVFPPEL------------TPWQSVVEFGLLEAGILP-------YNGYSL 200
Y E++ + P + P + + ++ AG+ NGY
Sbjct: 122 LPYYRKAETRDIGPNDYHGGDGPVSVTTPKPGNNPLFEAMVTAGVQAGYPRTDDLNGYQQ 181
Query: 201 EHIEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRA 258
E + T Q G+R ++A L +A NL + +A ++IIF+ RA
Sbjct: 182 EGF--GPMDRTVTPQ-GRRASTARGYLDQARGRPNLTIRTHALTDHIIFAG------KRA 232
Query: 259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLN 318
G+ ++ +G S +A NK +V+L AGA+ SPQ+L SG+G + L+ +
Sbjct: 233 VGVEWL--EGESTIPSKATANK--------EVLLCAGAIASPQILQRSGVGNPELLRQFD 282
Query: 319 IPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEP------------------------- 353
IP + DL VGE +QD+ ++ Q EP
Sbjct: 283 IPVVHDLPGVGENLQDH------LEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTG 336
Query: 354 ---------------------PEVVAGVLPISSNASRMPIAAKLAFPISKGKL------- 385
P + LP++ N + + F G +
Sbjct: 337 IGASNQFEAGGFIRSRAEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGH 396
Query: 386 -ELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMS 442
L S DP +P+I FNY++ E+D E +++ ++ ++ + G I P + S
Sbjct: 397 VRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGTECQS 456
Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
++ EL + +N+ T +H G C +G +VVD + RV+G++G+RV+D S + N
Sbjct: 457 DA-ELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGVRVVDASIMPQIITGN 515
Query: 499 PMATVMMLG 507
AT +M+G
Sbjct: 516 LNATTIMIG 524
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/541 (24%), Positives = 236/541 (43%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESK----------------VVFPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ + P + P +++++E G ++AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVITSKPGVNPLFEAMIEAG-MQAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R +++ L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPHGRRASTSRGYLDQAKSRPNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P + A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPRIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPISKGKL--------ELDSTD 391
LP++ N + + F G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPGILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G +VVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 237/541 (43%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++I F +GK RA G
Sbjct: 181 QEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIFF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPISKGKL--------ELDSTD 391
LP++ N + + F G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G +VVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 237/541 (43%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++I F +GK RA G
Sbjct: 181 QEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIFF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G + L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A GV
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPISKGKL--------ELDSTD 391
LP++ N + + F G + + S D
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRD 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G +VVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 133/542 (24%), Positives = 232/542 (42%), Gaps = 106/542 (19%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 REYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRVDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ ++ ++ RG+ LGGSS ING Y R + + K+ G W
Sbjct: 63 NWAYETEPEPYMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRD 122
Query: 159 VKKAYEWVESKVVFPPEL----------TPWQ--SVVEFGLLEAGILP-------YNGYS 199
V + E++ + + TP +V+ ++EAG+ NGY
Sbjct: 123 VLPYFRKAETRDIGANDYHGGDGPVSVATPKNDNNVLFHAMVEAGVQAGYPRTGDLNGYQ 182
Query: 200 LEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKN-LVVLLNATVNNIIFSNNGKANESRA 258
E + T + + T+ L+ P++ L ++ +AT + I+F+ RA
Sbjct: 183 QEGF--GPMDRTVTPRGRRASTARGYLDMAKPRDGLHIVTHATTDRILFAGK------RA 234
Query: 259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLN 318
G+ ++ G+S+ +A+ + +V++ AGA+ SPQLL SG+G D L+ L+
Sbjct: 235 IGVHYLV--GNSSEGIDAHARR--------EVLVCAGAIASPQLLQRSGVGAPDLLRALD 284
Query: 319 IPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP-------------------------- 351
+ + DL VG+ +QD+ + T P P
Sbjct: 285 VQLVHDLPGVGQNLQDHLEVYIQYACTKPVSLYPALQWWNQPAIGAQWLFAGTGTGASNQ 344
Query: 352 -------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDST 390
+ P + LP++ N + + F S+G++ S
Sbjct: 345 FEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHAKSR 404
Query: 391 DPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELR 448
DPRQ+PSI FNY + ++D E +++ ++ ++ ++ G I P +++ EL
Sbjct: 405 DPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDAYRGREISPSADCKTDA-ELD 463
Query: 449 KLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVM 504
++ T YH C +G+ VVD RV+G++GLRVID S N AT +
Sbjct: 464 AFVRSRAETAYHPSCSCAMGTDAMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTI 523
Query: 505 ML 506
M+
Sbjct: 524 MI 525
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 236/541 (43%), Gaps = 104/541 (19%)
Query: 53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
FDYI++G G+ G LA L++ N +VLL+E GG + T LQ Y
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 111 SVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELV 159
++ F++ ++ RG+ LGGSS ING Y R +++ ++ G W
Sbjct: 62 WAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDC 121
Query: 160 KKAYEWVESKVV----------------FPPELTP-WQSVVEFGLLEAGILPYNGYSLEH 202
Y E++ V P + P +++++E G+ +AG + +
Sbjct: 122 LPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGV-QAGYPRTDDLNGYQ 180
Query: 203 IEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHG 260
EG G+R ++A L +A + NL + +A ++IIF +GK RA G
Sbjct: 181 QEGFGPMDRTVTPHGRRASTARGYLDQAKSRSNLTIRTHAMTDHIIF--DGK----RAVG 234
Query: 261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIP 320
+ +++ D + P ++ +V+L AGA+ SPQ+L SG+G L + +IP
Sbjct: 235 VEWLEGDSTI----------PTRAAANKEVLLCAGAIASPQILQRSGVGNAGLLAEFDIP 284
Query: 321 TIVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEPPEVVA-------GV------ 360
+ +L VGE +QD+ C + V P + P++ A G+
Sbjct: 285 LVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNHF 343
Query: 361 ---------------------LPISSNASRMPIAAKLAFPISKGKL--------ELDSTD 391
LP++ N + + F G + + S
Sbjct: 344 EAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRA 403
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
P Q+P+I FNY++ E+D E +++ ++ ++ + G + + +DE L +
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYHGREISPGVECQTDEQLDEF 463
Query: 451 CKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
+N+ T +H G C +G SVVD + RV+G++GLRV+D S + N AT +M+
Sbjct: 464 VRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
Query: 507 G 507
G
Sbjct: 524 G 524
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 133/542 (24%), Positives = 231/542 (42%), Gaps = 106/542 (19%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ +DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 3 REYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ ++ ++ RG+ LGGSS ING Y R + + K+ G W
Sbjct: 63 NWAYETEPEPYMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRD 122
Query: 159 VKKAYEWVESKVVFPPEL----------TPWQ--SVVEFGLLEAGILP-------YNGYS 199
V + E++ + + TP +V+ ++EAG+ NGY
Sbjct: 123 VLPYFRKAETRDIGANDYHGGDGPVSVATPKNDNNVLFHAMVEAGVQAGYPRTDDLNGYQ 182
Query: 200 LEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKN-LVVLLNATVNNIIFSNNGKANESRA 258
E + T + + T+ L+ P++ L ++ +AT + I+F+ RA
Sbjct: 183 QEGF--GPMDRTVTPRGRRASTARGYLDMAKPRDGLHIVTHATTDRILFAGK------RA 234
Query: 259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLN 318
G+ ++ G+S+ +A+ + +V++ AGA+ SPQLL SG+G D L+ L+
Sbjct: 235 IGVHYLV--GNSSEGIDAHARR--------EVLVCAGAIASPQLLQRSGVGAPDLLRALD 284
Query: 319 IPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP-------------------------- 351
+ + DL VG+ +QD+ + T P P
Sbjct: 285 VQLVHDLPGVGQNLQDHLEVYIQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASNQ 344
Query: 352 -------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDST 390
+ P + LP++ N + + F S+G++ S
Sbjct: 345 FEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHAKSR 404
Query: 391 DPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELR 448
DPRQ+PSI FNY + ++D E +++ ++ ++ + G I P +++ EL
Sbjct: 405 DPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-ELD 463
Query: 449 KLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVM 504
++ T YH C +G+ VVD RV+G++GLRVID S N AT +
Sbjct: 464 AFVRSRAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTI 523
Query: 505 ML 506
M+
Sbjct: 524 MI 525
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/523 (25%), Positives = 224/523 (42%), Gaps = 106/523 (20%)
Query: 54 FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
+DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 7 YDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 66
Query: 112 VAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWV- 166
++ ++ ++ RG+ LGGSS ING Y R + + GW +E + + ++
Sbjct: 67 AYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRG--NAMDYDGWAKEPGLEDWSYLD 124
Query: 167 --------ESKVVFPPEL----------TP-------WQSVVEFGLLEAGILPYNGYSLE 201
E++ + P + TP + ++VE G+ +AG + +
Sbjct: 125 CLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGV-QAGFPRTDDLNGY 183
Query: 202 HIEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAH 259
EG G+R ++A L EA L ++ +A + I+F RA
Sbjct: 184 QQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK------RAV 237
Query: 260 GIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNI 319
G+ ++ D S+ +A K +V+L GA+ SPQ+L SG+GP + L L+I
Sbjct: 238 GVAYLVGD--SDTRIQARARK--------EVLLCGGAIASPQILQRSGVGPAEVLNKLDI 287
Query: 320 PTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP--------------------------- 351
P + DL VG+ +QD+ + T P P
Sbjct: 288 PVVHDLPGVGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQF 347
Query: 352 ------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDSTD 391
E P + LP++ N + + F S+G++++ S D
Sbjct: 348 EAGGFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGRVQVKSKD 407
Query: 392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LRKL 450
PR+ PSI FNY+A E+D E ++L ++ + ++ + G + + SDE L +
Sbjct: 408 PREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDVQSDEALDQF 467
Query: 451 CKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGS 489
+ + T YH C +G+ VVD RV+G++ LRV+D S
Sbjct: 468 VREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDAS 510
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/543 (25%), Positives = 231/543 (42%), Gaps = 108/543 (19%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ +DYI++G G+ G LAA L+++ SVLL+E GG + T LQ Y
Sbjct: 3 REYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ + ++ RG+ LGGSS ING Y R + + K+ G W
Sbjct: 63 NWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRD 122
Query: 159 VKKAYEWVESKVVFPPEL----------TP-------WQSVVEFGLLEAG---ILPYNGY 198
V + E++ + + TP +Q++V+ G+ +AG NGY
Sbjct: 123 VLPYFRKAETRDIGANDYHGGEGPVSVATPKNDNNVLFQAMVDAGV-QAGYPRTDDLNGY 181
Query: 199 SLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKN-LVVLLNATVNNIIFSNNGKANESR 257
E + T Q + T+ L+ P++ L ++ +AT + I+F+ R
Sbjct: 182 QQEGF--GPMDRTVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK------R 233
Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL 317
A G+ ++ G+S+ +A+ + +V++ AGA+ SPQLL SG+G D L+ L
Sbjct: 234 AVGVHYLV--GNSSEGIDAHARR--------EVLVCAGAIASPQLLQRSGVGAPDLLRAL 283
Query: 318 NIPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP------------------------- 351
++ + DL VG+ +QD+ + T P P
Sbjct: 284 DVQLVHDLPGVGQNLQDHLEVYMQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASN 343
Query: 352 --------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDS 389
+ P + LP++ N + + F S+G++ S
Sbjct: 344 QFEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARS 403
Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDEL 447
DPRQ+PSI FNY + ++D E +++ ++ ++ + G I P +++ EL
Sbjct: 404 RDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-EL 462
Query: 448 RKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATV 503
+ T YH C +G+ VVD RV+G++GLRVID S N AT
Sbjct: 463 DAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATT 522
Query: 504 MML 506
+M+
Sbjct: 523 IMI 525
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/543 (25%), Positives = 231/543 (42%), Gaps = 108/543 (19%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ +DYI++G G+ G LAA L+++ SVLL+E GG + T LQ Y
Sbjct: 3 REYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ + ++ RG+ LGGSS ING Y R + + K+ G W
Sbjct: 63 NWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRD 122
Query: 159 VKKAYEWVESKVVFPPEL----------TP-------WQSVVEFGLLEAG---ILPYNGY 198
V + E++ + + TP +Q++V+ G+ +AG NGY
Sbjct: 123 VLPYFRKAETRDIGANDYHGGEGPVSVATPKNDNNVLFQAMVDAGV-QAGYPRTDDLNGY 181
Query: 199 SLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKN-LVVLLNATVNNIIFSNNGKANESR 257
E + T Q + T+ L+ P++ L ++ +AT + I+F+ R
Sbjct: 182 QQEGF--GPMDRTVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK------R 233
Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL 317
A G+ ++ G+S+ +A+ + +V++ AGA+ SPQLL SG+G D L+ L
Sbjct: 234 AVGVHYLV--GNSSEGIDAHARR--------EVLVCAGAIASPQLLQRSGVGAPDLLRAL 283
Query: 318 NIPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP------------------------- 351
++ + DL VG+ +QD+ + T P P
Sbjct: 284 DVQLVHDLPGVGQNLQDHLEVYMQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASN 343
Query: 352 --------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDS 389
+ P + LP++ N + + F S+G++ S
Sbjct: 344 QFEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARS 403
Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDEL 447
DPRQ+PSI FNY + ++D E +++ ++ ++ + G I P +++ EL
Sbjct: 404 RDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-EL 462
Query: 448 RKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATV 503
+ T YH C +G+ VVD RV+G++GLRVID S N AT
Sbjct: 463 DAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATT 522
Query: 504 MML 506
+M+
Sbjct: 523 IMI 525
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/543 (25%), Positives = 231/543 (42%), Gaps = 108/543 (19%)
Query: 52 KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEY 109
+ +DYI++G G+ G LAA L+++ SVLL+E GG + T LQ Y
Sbjct: 3 REYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 62
Query: 110 TSVAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEEL 158
++ + ++ RG+ LGGSS ING Y R + + K+ G W
Sbjct: 63 NWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRD 122
Query: 159 VKKAYEWVESKVVFPPEL----------TP-------WQSVVEFGLLEAG---ILPYNGY 198
V + E++ + + TP +Q++V+ G+ +AG NGY
Sbjct: 123 VLPYFRKAETRDIGANDYHGGEGPVSVATPKNDNNVLFQAMVDAGV-QAGYPRTDDLNGY 181
Query: 199 SLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKN-LVVLLNATVNNIIFSNNGKANESR 257
E + T Q + T+ L+ P++ L ++ +AT + I+F+ R
Sbjct: 182 QQEGF--GPMDRTVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK------R 233
Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL 317
A G+ ++ G+S+ +A+ + +V++ AGA+ SPQLL SG+G D L+ L
Sbjct: 234 AVGVHYLV--GNSSEGIDAHARR--------EVLVCAGAIASPQLLQRSGVGAPDLLRAL 283
Query: 318 NIPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP------------------------- 351
++ + DL VG+ +QD+ + T P P
Sbjct: 284 DVQLVHDLPGVGQNLQDHLEVYMQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASN 343
Query: 352 --------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDS 389
+ P + LP++ N + + F S+G++ S
Sbjct: 344 QFEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARS 403
Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDEL 447
DPRQ+PSI FNY + ++D E +++ ++ ++ + G I P +++ EL
Sbjct: 404 RDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-EL 462
Query: 448 RKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATV 503
+ T YH C +G+ VVD RV+G++GLRVID S N AT
Sbjct: 463 DAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATT 522
Query: 504 MML 506
+M+
Sbjct: 523 IMI 525
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/521 (25%), Positives = 222/521 (42%), Gaps = 106/521 (20%)
Query: 55 DYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDE---Y 109
DY++VG G+ G +A LS++ +SV+++E GGS FG P + + + Y
Sbjct: 4 DYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFG-PFIQMPAALAWPMSMKRYNWGY 62
Query: 110 TSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR-EDFVK-----KAGWDEELVKKAY 163
S + + + RG+V+GGSS+ING Y R EDF + GW V +
Sbjct: 63 LSEPEPNLDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYF 122
Query: 164 E-----------WVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSL-EHIEGTKIGGT 211
+ W + + P + + ++AG G+ L + G+K G
Sbjct: 123 KRMEHSHGGEEGWRGTDGPLHVQRGPVSNPLFHAFIQAGAQA--GFELTDDYNGSKQEGF 180
Query: 212 AFDQ----CGKRHTSAD-LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS 266
+ G+R ++A+ L+ + V L+N +I N RA G+ +
Sbjct: 181 GLMEQTIHNGRRWSAANAYLKPALKRGNVTLVNGFARKVIIEN------GRAVGVEIERR 234
Query: 267 DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQ 326
+ N+ +VI+SA + SP+LL+LSGIGP HLKD+ I D
Sbjct: 235 ----GRVETVKANR--------EVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRP 282
Query: 327 EVGEGMQDN-PCIAKLVDTMP---QKRLP------------------------------- 351
VG +QD+ + V T P LP
Sbjct: 283 GVGANLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLR 342
Query: 352 -----EPPEVVAGVLPIS------SNASRMPIAAKLAFPISK--GKLELDSTDPRQNPSI 398
+ P++ LP++ + A A + + +SK G + L S DP +P I
Sbjct: 343 SAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKSRGNVTLRSADPHDDPVI 402
Query: 399 KFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRKLCKNNVR 456
+FNY++ +D + V+L ++ ++ F G I+P E + ++ +++ + ++
Sbjct: 403 RFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFRGPEIQPGENIETD-EQIDAFLREHLE 461
Query: 457 TFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDGSTF 491
+ YH G C +G +VVD + RV GV+GLRV D S F
Sbjct: 462 SAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIF 502
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 131/525 (24%), Positives = 221/525 (42%), Gaps = 110/525 (20%)
Query: 54 FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
+DYI++G G+ G LAA L+++ +VLL+E GG + T LQ Y
Sbjct: 7 YDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 66
Query: 112 VAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWV- 166
++ ++ ++ RG+ LGGSS ING Y R + + GW +E + + ++
Sbjct: 67 AYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRG--NAMDYDGWAKEPGLEDWSYLD 124
Query: 167 --------ESKVVFPPELTPWQSVVEF------------GLLEAGILP-------YNGYS 199
E++ + P + + V ++EAG+ NGY
Sbjct: 125 CLPYFRKAETRDIGPNDYHGGEGPVSVTKPKAGNNPLFHAMVEAGVQAGFPRTDDLNGYQ 184
Query: 200 LEHIEGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESR 257
E G G+R ++A L EA L ++ +A + I+F R
Sbjct: 185 QE---GFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK------R 235
Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL 317
A G+ ++ D S+ +A K +V+L GA+ SPQ+L SG+GP + L L
Sbjct: 236 AVGVAYLVGD--SDTRIQARARK--------EVLLCGGAIASPQILQRSGVGPAEVLNKL 285
Query: 318 NIPTIVDLQEVGEGMQDN-PCIAKLVDTMPQKRLP------------------------- 351
+IP + DL VG+ +QD+ + T P P
Sbjct: 286 DIPVVHDLPGVGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAKWMFLGTGIGASN 345
Query: 352 --------------EPPEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDS 389
E P + LP++ N + + F S+G++++ S
Sbjct: 346 QFEAGGFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGRVQVKS 405
Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE-LR 448
DPR+ PSI FNY++ E+D E ++L ++ + ++ + G + + SDE L
Sbjct: 406 KDPREYPSILFNYMSSEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDVQSDEALD 465
Query: 449 KLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGS 489
+ + + T YH C +G+ VVD RV+G++ LRV+D S
Sbjct: 466 QFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDAS 510
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 142/552 (25%), Positives = 228/552 (41%), Gaps = 117/552 (21%)
Query: 54 FDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGS-PFGNPLVTDKRFFGFSLLQTD-EY 109
+D+IV+GGG+ G +A+ LS+ + VLL+E GG P G + + F F D Y
Sbjct: 65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPS--MFLNFIGSDIDYRY 122
Query: 110 TSVAQSFISTDGVQNH----RGRVLGGSSAINGGFYSRA-REDFVKKA-----GWDEELV 159
+ + ++ RG+VLGG+S +NG Y R RED+ A GW + V
Sbjct: 123 NTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDV 182
Query: 160 KKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYN--------------GYSLEHIEG 205
++ E + T + + + GLL G PYN G+S++ + G
Sbjct: 183 LPFFKKSEDNLELDAVGTEYHA--KGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNG 240
Query: 206 TKIGGTAFDQC----GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAH 259
G Q G R++SA L A NL +LLN TV ++ K
Sbjct: 241 QNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPGTK----NVV 296
Query: 260 GIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNI 319
G+ GS M + + K +VI+S GA+ SPQ+LLLSG+GP + L+ +N+
Sbjct: 297 GVEVSDQFGS---MRKILVKK--------EVIVSGGAVNSPQILLLSGVGPKEDLQKVNV 345
Query: 320 PTIVDLQEVG-----------------------------------EGMQDNPCIAKLVDT 344
+ L VG +G+ I+ +
Sbjct: 346 RPVHHLPGVGKNLHNHVAYFTNFFIDDADTAPLNWATAMEYLLFRDGLMSGTGISDVTAK 405
Query: 345 MPQK-----RLPEPPEVVAGVLP-----------ISSNASRMPIAAKLAFPISKGKLELD 388
M + LP+ G L +S+N+ + I + P S+G + L
Sbjct: 406 MATRWADRPNLPDLQLYFGGYLASCARTGQVGELLSNNSRAIQIFPAVLNPKSRGYITLR 465
Query: 389 STDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF------LGIKPQEKLMS 442
S DP P I NYL E+D+ V+ ++ +++++ + + +K E
Sbjct: 466 SADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAF 525
Query: 443 NSDELRKLC-KNNVRTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESP 495
SD + + N H G C +G +VV+ + RV+GV+GLRV+D S +
Sbjct: 526 ASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVT 585
Query: 496 GTNPMATVMMLG 507
N A +M+
Sbjct: 586 AGNTHAPAVMIA 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,483,815
Number of Sequences: 539616
Number of extensions: 9426775
Number of successful extensions: 25815
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 25015
Number of HSP's gapped (non-prelim): 465
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)