Query 009873
Match_columns 523
No_of_seqs 244 out of 2218
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 18:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 6E-78 1.3E-82 636.5 43.9 460 51-521 53-583 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 3.3E-76 7E-81 598.4 34.5 452 47-522 51-620 (623)
3 PRK02106 choline dehydrogenase 100.0 7.9E-70 1.7E-74 580.2 43.9 450 50-518 2-535 (560)
4 TIGR01810 betA choline dehydro 100.0 6.3E-69 1.4E-73 570.3 44.2 444 55-517 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 1.6E-61 3.4E-66 509.0 35.3 449 50-517 4-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 3.5E-49 7.5E-54 409.1 32.7 420 54-517 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 2.4E-41 5.1E-46 334.2 18.1 267 54-336 1-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1.1E-31 2.5E-36 235.7 10.1 131 379-510 1-144 (144)
9 PRK06481 fumarate reductase fl 99.7 6.8E-17 1.5E-21 170.6 18.0 193 47-304 55-257 (506)
10 PRK07121 hypothetical protein; 99.7 8.4E-16 1.8E-20 162.3 15.2 208 37-305 4-246 (492)
11 PRK12845 3-ketosteroid-delta-1 99.6 2.2E-15 4.8E-20 160.2 16.5 77 47-167 10-89 (564)
12 PRK12835 3-ketosteroid-delta-1 99.6 3.4E-15 7.4E-20 159.7 15.4 61 228-305 222-282 (584)
13 PRK12837 3-ketosteroid-delta-1 99.6 9.2E-15 2E-19 154.7 16.7 58 229-304 184-241 (513)
14 PRK12844 3-ketosteroid-delta-1 99.6 1.5E-14 3.3E-19 154.2 15.3 61 227-305 216-276 (557)
15 PF00890 FAD_binding_2: FAD bi 99.6 1.4E-14 3E-19 150.2 12.5 185 55-303 1-207 (417)
16 PRK08274 tricarballylate dehyd 99.5 4.6E-14 1E-18 148.3 14.2 194 51-309 2-203 (466)
17 PRK12834 putative FAD-binding 99.5 1.5E-13 3.3E-18 146.8 16.5 35 51-85 2-37 (549)
18 PRK06175 L-aspartate oxidase; 99.5 7.6E-14 1.6E-18 144.5 13.0 51 230-299 140-190 (433)
19 TIGR01813 flavo_cyto_c flavocy 99.5 1.9E-13 4.2E-18 142.5 14.2 62 227-305 138-199 (439)
20 PRK06452 sdhA succinate dehydr 99.5 1.8E-13 3.9E-18 146.3 13.9 53 228-298 145-198 (566)
21 PRK07843 3-ketosteroid-delta-1 99.5 4.9E-13 1.1E-17 142.8 17.2 61 228-306 217-277 (557)
22 PTZ00306 NADH-dependent fumara 99.5 3.2E-13 6.9E-18 155.1 16.6 198 45-301 401-623 (1167)
23 PRK12839 hypothetical protein; 99.5 1.9E-13 4.1E-18 145.8 13.2 61 227-304 222-282 (572)
24 PRK07573 sdhA succinate dehydr 99.5 2.6E-13 5.5E-18 146.6 13.9 54 228-299 179-233 (640)
25 PRK08958 sdhA succinate dehydr 99.5 3.2E-13 7E-18 144.7 13.7 56 227-299 151-207 (588)
26 PLN00128 Succinate dehydrogena 99.5 2.4E-13 5.2E-18 146.3 12.7 56 228-300 196-252 (635)
27 PRK12843 putative FAD-binding 99.5 5.7E-13 1.2E-17 142.9 15.3 61 227-305 229-289 (578)
28 PRK07395 L-aspartate oxidase; 99.5 2.2E-13 4.8E-18 144.7 12.0 37 49-85 5-41 (553)
29 PTZ00139 Succinate dehydrogena 99.5 3.8E-13 8.2E-18 144.8 13.4 55 228-299 175-230 (617)
30 PRK09078 sdhA succinate dehydr 99.5 4.2E-13 9E-18 144.3 13.4 56 227-299 157-213 (598)
31 PRK06263 sdhA succinate dehydr 99.5 6.4E-13 1.4E-17 141.8 14.0 55 228-299 143-198 (543)
32 PRK12842 putative succinate de 99.5 1.5E-12 3.2E-17 139.8 16.7 60 228-305 223-282 (574)
33 PLN02815 L-aspartate oxidase 99.5 5.5E-13 1.2E-17 142.4 13.3 56 230-299 167-223 (594)
34 PRK06134 putative FAD-binding 99.4 1.7E-12 3.6E-17 139.4 16.7 59 228-304 226-284 (581)
35 COG2081 Predicted flavoprotein 99.4 1.1E-12 2.4E-17 127.9 13.1 168 52-302 2-171 (408)
36 PRK07804 L-aspartate oxidase; 99.4 9.4E-13 2E-17 140.1 13.4 37 49-85 12-49 (541)
37 COG0029 NadB Aspartate oxidase 99.4 8.4E-12 1.8E-16 124.5 18.9 54 228-298 143-196 (518)
38 PRK08626 fumarate reductase fl 99.4 9.5E-13 2.1E-17 142.5 13.2 54 228-299 167-221 (657)
39 PRK09077 L-aspartate oxidase; 99.4 1.7E-12 3.7E-17 138.1 14.3 35 51-85 6-40 (536)
40 PRK08071 L-aspartate oxidase; 99.4 1.2E-12 2.6E-17 138.3 12.7 50 232-299 142-191 (510)
41 PRK05945 sdhA succinate dehydr 99.4 1.4E-12 3E-17 139.9 12.8 55 227-299 143-198 (575)
42 PRK09231 fumarate reductase fl 99.4 3.1E-12 6.6E-17 137.2 14.7 52 230-299 145-197 (582)
43 PF03486 HI0933_like: HI0933-l 99.4 3.3E-13 7.2E-18 137.2 6.3 191 54-327 1-193 (409)
44 PRK07803 sdhA succinate dehydr 99.4 2.6E-12 5.6E-17 138.8 13.2 35 51-85 6-41 (626)
45 PRK08205 sdhA succinate dehydr 99.4 2.9E-12 6.4E-17 137.6 13.4 55 228-299 149-207 (583)
46 PRK08641 sdhA succinate dehydr 99.4 3.3E-12 7.2E-17 137.1 13.6 50 233-299 151-201 (589)
47 PRK07057 sdhA succinate dehydr 99.4 3.7E-12 7.9E-17 136.8 13.9 56 227-299 156-212 (591)
48 TIGR01176 fum_red_Fp fumarate 99.4 5.5E-12 1.2E-16 134.9 14.0 52 230-299 144-196 (580)
49 PRK06069 sdhA succinate dehydr 99.4 5.8E-12 1.3E-16 135.3 14.0 52 230-299 149-201 (577)
50 TIGR00551 nadB L-aspartate oxi 99.4 6.8E-12 1.5E-16 132.2 13.7 53 228-299 137-190 (488)
51 TIGR01812 sdhA_frdA_Gneg succi 99.3 7.4E-12 1.6E-16 134.6 13.8 55 227-299 137-192 (566)
52 PRK11101 glpA sn-glycerol-3-ph 99.3 1.4E-11 3E-16 131.4 15.2 62 228-308 158-220 (546)
53 TIGR02061 aprA adenosine phosp 99.3 2.7E-11 5.7E-16 129.5 13.3 53 230-298 137-191 (614)
54 PRK07512 L-aspartate oxidase; 99.3 1.9E-11 4.1E-16 129.3 11.8 50 231-299 149-198 (513)
55 TIGR01811 sdhA_Bsu succinate d 99.3 2.5E-11 5.3E-16 130.5 12.6 53 230-299 144-197 (603)
56 TIGR02734 crtI_fam phytoene de 99.3 2.3E-10 5E-15 121.5 19.8 57 227-305 227-283 (502)
57 PRK08275 putative oxidoreducta 99.3 3E-11 6.5E-16 129.2 11.7 55 228-299 146-201 (554)
58 PF01266 DAO: FAD dependent ox 99.2 6.6E-12 1.4E-16 127.1 6.2 57 228-308 156-212 (358)
59 PRK06854 adenylylsulfate reduc 99.2 7E-11 1.5E-15 127.3 12.8 35 51-85 9-46 (608)
60 PLN02464 glycerol-3-phosphate 99.2 9.8E-11 2.1E-15 126.4 12.3 63 227-307 240-304 (627)
61 PRK04176 ribulose-1,5-biphosph 99.2 1.3E-10 2.8E-15 111.4 11.6 35 51-85 23-58 (257)
62 TIGR02730 carot_isom carotene 99.2 4.9E-09 1.1E-13 111.0 24.0 56 227-304 237-292 (493)
63 COG1053 SdhA Succinate dehydro 99.2 8.2E-11 1.8E-15 124.1 10.0 52 230-298 150-202 (562)
64 PRK13800 putative oxidoreducta 99.2 2.5E-10 5.5E-15 128.5 13.5 39 47-85 7-46 (897)
65 TIGR00292 thiazole biosynthesi 99.1 2.4E-10 5.2E-15 109.2 10.5 34 52-85 20-54 (254)
66 COG0579 Predicted dehydrogenas 99.1 9.2E-10 2E-14 111.1 15.1 63 226-310 160-222 (429)
67 PTZ00383 malate:quinone oxidor 99.1 7.2E-10 1.6E-14 115.8 14.7 39 47-85 39-80 (497)
68 PF01946 Thi4: Thi4 family; PD 99.1 8.8E-11 1.9E-15 105.7 6.6 35 51-85 15-50 (230)
69 TIGR02733 desat_CrtD C-3',4' d 99.1 1.8E-08 3.9E-13 106.8 24.7 36 54-89 2-38 (492)
70 TIGR01373 soxB sarcosine oxida 99.1 6.5E-10 1.4E-14 114.9 13.3 37 49-85 26-65 (407)
71 TIGR02485 CobZ_N-term precorri 99.1 2.8E-10 6E-15 118.4 10.3 59 227-305 131-190 (432)
72 COG1233 Phytoene dehydrogenase 99.1 3E-09 6.4E-14 112.0 18.0 38 52-89 2-40 (487)
73 PRK13369 glycerol-3-phosphate 99.1 1.3E-09 2.9E-14 115.3 15.1 57 228-304 164-220 (502)
74 PRK12266 glpD glycerol-3-phosp 99.1 1.6E-09 3.4E-14 114.7 15.6 36 51-86 4-40 (508)
75 COG1635 THI4 Ribulose 1,5-bisp 99.1 5.3E-10 1.1E-14 100.0 9.2 34 52-85 29-63 (262)
76 COG0578 GlpA Glycerol-3-phosph 99.1 4.8E-09 1E-13 108.1 17.7 64 228-311 173-237 (532)
77 COG3573 Predicted oxidoreducta 99.1 3.2E-09 6.9E-14 100.4 14.6 35 51-85 3-38 (552)
78 PRK08401 L-aspartate oxidase; 99.1 2.3E-09 4.9E-14 112.4 15.3 32 54-85 2-34 (466)
79 PLN02661 Putative thiazole syn 99.1 1.2E-09 2.5E-14 107.5 11.6 36 50-85 89-126 (357)
80 TIGR01320 mal_quin_oxido malat 99.1 6E-09 1.3E-13 109.2 17.7 64 227-309 186-250 (483)
81 KOG2404 Fumarate reductase, fl 99.0 1.4E-09 2.9E-14 102.4 10.1 56 232-305 158-214 (477)
82 TIGR03329 Phn_aa_oxid putative 99.0 1.3E-09 2.9E-14 114.2 11.3 36 50-85 21-59 (460)
83 PRK05257 malate:quinone oxidor 99.0 4.9E-09 1.1E-13 110.0 14.6 35 51-85 3-40 (494)
84 TIGR01377 soxA_mon sarcosine o 99.0 5.8E-09 1.3E-13 106.8 14.2 32 54-85 1-33 (380)
85 PRK12409 D-amino acid dehydrog 99.0 4.6E-09 1E-13 108.7 13.1 32 54-85 2-34 (410)
86 PF12831 FAD_oxidored: FAD dep 99.0 2.8E-10 6E-15 118.0 3.9 60 228-309 99-158 (428)
87 PRK11259 solA N-methyltryptoph 99.0 6.5E-09 1.4E-13 106.3 13.1 34 52-85 2-36 (376)
88 KOG1298 Squalene monooxygenase 98.9 1.2E-08 2.5E-13 98.5 13.3 54 228-300 157-210 (509)
89 PRK00711 D-amino acid dehydrog 98.9 1.1E-08 2.3E-13 106.3 13.5 31 55-85 2-33 (416)
90 KOG0042 Glycerol-3-phosphate d 98.9 6.5E-09 1.4E-13 104.3 9.9 59 228-304 233-292 (680)
91 PRK10157 putative oxidoreducta 98.9 7.7E-09 1.7E-13 107.3 10.9 36 52-87 4-40 (428)
92 PRK11728 hydroxyglutarate oxid 98.9 1.2E-08 2.6E-13 104.9 12.0 33 53-85 2-37 (393)
93 TIGR03364 HpnW_proposed FAD de 98.9 6.1E-09 1.3E-13 106.1 8.5 32 54-85 1-33 (365)
94 COG0644 FixC Dehydrogenases (f 98.8 6.8E-09 1.5E-13 106.7 8.3 36 52-87 2-38 (396)
95 PTZ00363 rab-GDP dissociation 98.8 4.8E-08 1E-12 100.7 14.0 42 51-92 2-44 (443)
96 PRK13339 malate:quinone oxidor 98.8 1.3E-07 2.8E-12 98.6 17.3 35 51-85 4-41 (497)
97 KOG2415 Electron transfer flav 98.8 1.1E-08 2.3E-13 99.6 8.0 75 225-309 188-269 (621)
98 PRK10015 oxidoreductase; Provi 98.8 7.9E-09 1.7E-13 107.1 7.6 37 51-87 3-40 (429)
99 KOG2820 FAD-dependent oxidored 98.8 2.3E-08 5E-13 95.1 9.7 39 50-88 4-43 (399)
100 KOG4254 Phytoene desaturase [C 98.8 2.5E-07 5.3E-12 91.4 16.8 60 226-307 271-330 (561)
101 PRK05192 tRNA uridine 5-carbox 98.8 4.9E-08 1.1E-12 102.9 11.7 34 52-85 3-37 (618)
102 COG0665 DadA Glycine/D-amino a 98.8 1.6E-07 3.6E-12 96.3 15.4 35 51-85 2-37 (387)
103 TIGR00275 flavoprotein, HI0933 98.7 6.9E-08 1.5E-12 99.2 12.0 29 57-85 1-30 (400)
104 PLN02985 squalene monooxygenas 98.7 1.6E-07 3.4E-12 99.4 14.6 39 47-85 37-76 (514)
105 COG3380 Predicted NAD/FAD-depe 98.7 1.1E-07 2.3E-12 88.0 11.0 31 55-85 3-34 (331)
106 PRK13977 myosin-cross-reactive 98.7 1.1E-07 2.3E-12 99.4 12.4 60 227-299 234-294 (576)
107 PF01134 GIDA: Glucose inhibit 98.7 5.9E-08 1.3E-12 97.0 8.7 48 228-298 105-152 (392)
108 PRK01747 mnmC bifunctional tRN 98.7 1.6E-07 3.5E-12 103.0 12.1 33 53-85 260-293 (662)
109 PLN02697 lycopene epsilon cycl 98.6 1.3E-06 2.9E-11 92.0 18.2 35 51-85 106-141 (529)
110 PRK06185 hypothetical protein; 98.6 2.6E-07 5.6E-12 95.6 12.4 36 50-85 3-39 (407)
111 PF06039 Mqo: Malate:quinone o 98.6 3E-06 6.5E-11 85.1 18.6 66 225-309 187-254 (488)
112 PRK05675 sdhA succinate dehydr 98.6 2.9E-07 6.3E-12 98.7 12.3 56 227-299 134-190 (570)
113 KOG2853 Possible oxidoreductas 98.6 1.2E-06 2.7E-11 83.4 13.5 37 49-85 82-123 (509)
114 PRK07364 2-octaprenyl-6-methox 98.5 9.4E-07 2E-11 91.6 13.5 37 50-86 15-52 (415)
115 PLN02172 flavin-containing mon 98.5 6.3E-07 1.4E-11 93.4 11.7 36 52-87 9-45 (461)
116 PF13738 Pyr_redox_3: Pyridine 98.5 1.2E-07 2.7E-12 87.9 5.0 57 228-307 91-147 (203)
117 PRK06126 hypothetical protein; 98.5 2.6E-06 5.5E-11 91.6 15.5 35 51-85 5-40 (545)
118 PRK08773 2-octaprenyl-3-methyl 98.5 1E-06 2.2E-11 90.7 11.7 35 51-85 4-39 (392)
119 TIGR02032 GG-red-SF geranylger 98.5 8.5E-07 1.8E-11 87.2 10.3 32 54-85 1-33 (295)
120 PRK05249 soluble pyridine nucl 98.4 2.6E-06 5.6E-11 89.6 13.1 35 51-85 3-38 (461)
121 PRK06183 mhpA 3-(3-hydroxyphen 98.4 3.6E-06 7.9E-11 90.2 14.4 35 51-85 8-43 (538)
122 TIGR02023 BchP-ChlP geranylger 98.4 1.6E-06 3.5E-11 89.0 11.2 31 54-84 1-32 (388)
123 PRK07208 hypothetical protein; 98.4 2E-06 4.4E-11 90.9 11.9 39 51-89 2-41 (479)
124 TIGR01816 sdhA_forward succina 98.4 1.7E-06 3.6E-11 92.9 11.2 55 227-299 127-182 (565)
125 PLN00093 geranylgeranyl diphos 98.4 1.9E-06 4.2E-11 89.7 11.4 38 48-85 34-72 (450)
126 PRK07608 ubiquinone biosynthes 98.4 2.9E-06 6.3E-11 87.1 12.6 35 52-86 4-39 (388)
127 PF01494 FAD_binding_3: FAD bi 98.4 5.9E-07 1.3E-11 90.7 7.0 34 53-86 1-35 (356)
128 PRK05976 dihydrolipoamide dehy 98.4 3.1E-06 6.8E-11 89.2 12.4 34 51-84 2-36 (472)
129 PRK05329 anaerobic glycerol-3- 98.4 4.4E-06 9.6E-11 85.6 12.8 33 53-85 2-35 (422)
130 PRK08244 hypothetical protein; 98.4 3.4E-06 7.4E-11 89.5 12.5 33 53-85 2-35 (493)
131 PRK06847 hypothetical protein; 98.4 4.3E-06 9.2E-11 85.5 12.7 34 52-85 3-37 (375)
132 PRK08243 4-hydroxybenzoate 3-m 98.3 3.6E-06 7.8E-11 86.6 12.1 33 53-85 2-35 (392)
133 PRK06467 dihydrolipoamide dehy 98.3 4E-06 8.7E-11 88.2 12.6 35 51-85 2-37 (471)
134 PRK07045 putative monooxygenas 98.3 4.4E-06 9.6E-11 85.8 12.7 35 51-85 3-38 (388)
135 PRK08013 oxidoreductase; Provi 98.3 4.5E-06 9.8E-11 86.1 12.3 34 53-86 3-37 (400)
136 PRK05714 2-octaprenyl-3-methyl 98.3 5.6E-06 1.2E-10 85.6 13.0 33 53-85 2-35 (405)
137 COG2072 TrkA Predicted flavopr 98.3 4.6E-06 1E-10 86.6 12.0 37 50-86 5-43 (443)
138 PRK08020 ubiF 2-octaprenyl-3-m 98.3 4.5E-06 9.7E-11 85.9 11.9 35 51-85 3-38 (391)
139 TIGR00136 gidA glucose-inhibit 98.3 2.9E-06 6.2E-11 89.6 10.5 32 54-85 1-33 (617)
140 TIGR03378 glycerol3P_GlpB glyc 98.3 5.4E-06 1.2E-10 84.1 11.9 58 228-305 272-329 (419)
141 PRK07190 hypothetical protein; 98.3 3.8E-06 8.3E-11 88.5 11.1 35 51-85 3-38 (487)
142 TIGR02028 ChlP geranylgeranyl 98.3 2.9E-06 6.4E-11 87.2 10.0 32 54-85 1-33 (398)
143 COG2509 Uncharacterized FAD-de 98.3 1.2E-05 2.7E-10 80.1 13.7 39 47-85 12-56 (486)
144 KOG2844 Dimethylglycine dehydr 98.3 3E-06 6.5E-11 87.6 9.6 73 212-308 177-252 (856)
145 PRK06184 hypothetical protein; 98.3 9.4E-06 2E-10 86.3 13.8 33 53-85 3-36 (502)
146 PRK07333 2-octaprenyl-6-methox 98.3 4.4E-06 9.6E-11 86.2 10.8 33 53-85 1-36 (403)
147 PRK06834 hypothetical protein; 98.3 6.4E-06 1.4E-10 86.9 12.0 33 53-85 3-36 (488)
148 PRK11445 putative oxidoreducta 98.3 1E-05 2.2E-10 81.8 12.9 32 54-85 2-33 (351)
149 PRK09126 hypothetical protein; 98.2 6.2E-06 1.4E-10 84.8 11.0 34 53-86 3-37 (392)
150 PTZ00367 squalene epoxidase; P 98.2 1.7E-05 3.8E-10 84.5 14.4 34 52-85 32-66 (567)
151 TIGR01984 UbiH 2-polyprenyl-6- 98.2 1.1E-05 2.3E-10 82.8 12.5 32 55-86 1-34 (382)
152 TIGR01988 Ubi-OHases Ubiquinon 98.2 8.5E-06 1.8E-10 83.5 11.8 33 55-87 1-34 (385)
153 PLN02507 glutathione reductase 98.2 8.8E-06 1.9E-10 86.1 12.0 33 51-83 23-56 (499)
154 PTZ00058 glutathione reductase 98.2 1.8E-06 4E-11 91.9 6.3 36 50-85 45-81 (561)
155 PRK08132 FAD-dependent oxidore 98.2 2.1E-05 4.6E-10 84.5 14.2 35 51-85 21-56 (547)
156 PRK07588 hypothetical protein; 98.2 1.8E-05 4E-10 81.3 12.7 31 55-85 2-33 (391)
157 PF13450 NAD_binding_8: NAD(P) 98.2 1.5E-06 3.2E-11 64.9 3.0 30 58-87 1-31 (68)
158 TIGR01790 carotene-cycl lycope 98.1 7.7E-06 1.7E-10 84.0 9.1 31 55-85 1-32 (388)
159 COG0654 UbiH 2-polyprenyl-6-me 98.1 1.2E-05 2.7E-10 82.4 10.0 32 53-84 2-34 (387)
160 PRK07236 hypothetical protein; 98.1 3.3E-05 7.1E-10 79.3 13.1 33 53-85 6-39 (386)
161 PRK08163 salicylate hydroxylas 98.1 2.1E-05 4.5E-10 81.1 11.7 34 52-85 3-37 (396)
162 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 2E-05 4.3E-10 81.0 10.9 33 53-85 2-35 (390)
163 PRK08850 2-octaprenyl-6-methox 98.0 3.3E-05 7.2E-10 79.8 11.6 32 53-84 4-36 (405)
164 COG0445 GidA Flavin-dependent 98.0 8.2E-06 1.8E-10 83.1 6.8 34 52-85 3-37 (621)
165 TIGR01989 COQ6 Ubiquinone bios 98.0 4.4E-05 9.6E-10 79.6 12.6 32 54-85 1-37 (437)
166 TIGR01421 gluta_reduc_1 glutat 98.0 3.3E-06 7.1E-11 88.3 3.8 34 52-85 1-35 (450)
167 PF00743 FMO-like: Flavin-bind 98.0 1.8E-05 4E-10 83.8 9.4 33 55-87 3-36 (531)
168 PRK06996 hypothetical protein; 98.0 8.9E-05 1.9E-09 76.4 13.4 37 49-85 7-48 (398)
169 TIGR03377 glycerol3P_GlpA glyc 98.0 8.3E-05 1.8E-09 79.3 13.4 62 228-308 137-199 (516)
170 PRK07251 pyridine nucleotide-d 98.0 9.6E-06 2.1E-10 84.7 6.1 33 53-85 3-36 (438)
171 TIGR01372 soxA sarcosine oxida 98.0 6.5E-05 1.4E-09 85.9 13.2 35 51-85 161-196 (985)
172 TIGR01424 gluta_reduc_2 glutat 98.0 5.2E-06 1.1E-10 86.8 4.0 33 53-85 2-35 (446)
173 COG0562 Glf UDP-galactopyranos 98.0 6.9E-06 1.5E-10 78.1 4.3 39 53-91 1-40 (374)
174 PF05834 Lycopene_cycl: Lycope 98.0 2.2E-05 4.8E-10 80.1 8.4 31 55-85 1-34 (374)
175 PRK06370 mercuric reductase; V 98.0 6.5E-06 1.4E-10 86.6 4.4 35 51-85 3-38 (463)
176 PRK15317 alkyl hydroperoxide r 98.0 6.1E-05 1.3E-09 80.3 11.8 35 50-84 208-243 (517)
177 PRK06115 dihydrolipoamide dehy 97.9 6.9E-06 1.5E-10 86.3 4.1 32 53-84 3-35 (466)
178 PRK06116 glutathione reductase 97.9 7.8E-06 1.7E-10 85.7 4.1 34 52-85 3-37 (450)
179 PRK06753 hypothetical protein; 97.9 0.00018 3.8E-09 73.5 13.7 31 55-85 2-33 (373)
180 TIGR03140 AhpF alkyl hydropero 97.9 9.8E-05 2.1E-09 78.6 11.6 33 51-83 210-243 (515)
181 PF04820 Trp_halogenase: Trypt 97.9 1.8E-05 4E-10 82.5 5.6 33 55-87 1-37 (454)
182 KOG1335 Dihydrolipoamide dehyd 97.9 0.00017 3.7E-09 70.3 11.6 34 52-85 38-72 (506)
183 PRK06416 dihydrolipoamide dehy 97.9 1.1E-05 2.3E-10 85.0 3.9 34 52-85 3-37 (462)
184 KOG2665 Predicted FAD-dependen 97.8 0.00014 3E-09 69.1 10.6 39 47-85 42-83 (453)
185 PRK05868 hypothetical protein; 97.8 0.00024 5.1E-09 72.5 13.2 31 55-85 3-34 (372)
186 KOG1399 Flavin-containing mono 97.8 7.6E-05 1.7E-09 76.8 9.4 33 54-86 7-40 (448)
187 COG1249 Lpd Pyruvate/2-oxoglut 97.8 1.4E-05 3E-10 82.5 4.0 35 51-85 2-37 (454)
188 PLN02546 glutathione reductase 97.8 1.5E-05 3.2E-10 85.0 4.3 33 51-83 77-110 (558)
189 KOG2852 Possible oxidoreductas 97.8 0.00011 2.4E-09 68.9 9.3 61 228-308 157-217 (380)
190 KOG0029 Amine oxidase [Seconda 97.8 1.4E-05 3.1E-10 83.5 3.9 40 50-89 12-52 (501)
191 PRK07818 dihydrolipoamide dehy 97.8 1.6E-05 3.5E-10 83.7 4.3 34 52-85 3-37 (466)
192 PRK07494 2-octaprenyl-6-methox 97.8 1.5E-05 3.2E-10 81.9 3.9 35 51-85 5-40 (388)
193 PRK08010 pyridine nucleotide-d 97.8 1.4E-05 3E-10 83.5 3.7 33 53-85 3-36 (441)
194 PRK07538 hypothetical protein; 97.8 0.0002 4.4E-09 74.1 12.2 31 55-85 2-33 (413)
195 KOG0405 Pyridine nucleotide-di 97.8 0.00016 3.4E-09 69.7 10.1 37 49-85 16-53 (478)
196 PRK07845 flavoprotein disulfid 97.8 0.00036 7.7E-09 73.4 13.4 31 55-85 3-34 (466)
197 TIGR01350 lipoamide_DH dihydro 97.8 2E-05 4.3E-10 82.9 4.0 32 53-84 1-33 (461)
198 PRK06292 dihydrolipoamide dehy 97.7 2.1E-05 4.5E-10 82.8 4.0 33 52-84 2-35 (460)
199 PTZ00153 lipoamide dehydrogena 97.7 2.1E-05 4.7E-10 85.1 3.9 34 51-84 114-148 (659)
200 TIGR00031 UDP-GALP_mutase UDP- 97.7 2.3E-05 5.1E-10 79.1 3.8 36 54-89 2-38 (377)
201 TIGR01423 trypano_reduc trypan 97.7 3E-05 6.4E-10 81.7 4.5 33 52-84 2-36 (486)
202 PRK14694 putative mercuric red 97.7 3E-05 6.5E-10 81.7 4.2 36 50-85 3-39 (468)
203 TIGR02053 MerA mercuric reduct 97.7 2.5E-05 5.5E-10 82.1 3.7 32 54-85 1-33 (463)
204 PRK13748 putative mercuric red 97.7 2.9E-05 6.4E-10 83.8 4.1 34 52-85 97-131 (561)
205 PRK08849 2-octaprenyl-3-methyl 97.7 2.7E-05 5.8E-10 79.9 3.4 33 53-85 3-36 (384)
206 PLN02463 lycopene beta cyclase 97.7 2.7E-05 5.9E-10 80.8 3.4 35 51-85 26-61 (447)
207 PRK06327 dihydrolipoamide dehy 97.7 3.6E-05 7.8E-10 81.2 4.2 33 52-84 3-36 (475)
208 TIGR03143 AhpF_homolog putativ 97.6 3.1E-05 6.8E-10 83.1 3.6 34 52-85 3-37 (555)
209 COG0492 TrxB Thioredoxin reduc 97.6 3.3E-05 7.2E-10 75.7 3.3 34 52-85 2-37 (305)
210 KOG2960 Protein involved in th 97.6 5.1E-05 1.1E-09 67.8 4.1 33 53-85 76-111 (328)
211 PLN02676 polyamine oxidase 97.6 5.2E-05 1.1E-09 79.9 4.4 38 52-89 25-64 (487)
212 TIGR01292 TRX_reduct thioredox 97.6 4.1E-05 8.8E-10 75.5 3.3 32 54-85 1-33 (300)
213 PF13434 K_oxygenase: L-lysine 97.6 0.00035 7.7E-09 70.0 10.0 33 53-85 2-36 (341)
214 PRK12775 putative trifunctiona 97.6 0.00078 1.7E-08 77.0 13.8 36 52-87 429-465 (1006)
215 COG1231 Monoamine oxidase [Ami 97.6 5.9E-05 1.3E-09 75.7 4.2 37 51-87 5-42 (450)
216 PTZ00052 thioredoxin reductase 97.6 4.5E-05 9.8E-10 80.8 3.6 33 52-84 4-37 (499)
217 PRK14727 putative mercuric red 97.6 6.1E-05 1.3E-09 79.5 4.4 35 51-85 14-49 (479)
218 PRK06475 salicylate hydroxylas 97.6 0.00073 1.6E-08 69.7 12.1 31 55-85 4-35 (400)
219 PLN02268 probable polyamine ox 97.6 5.1E-05 1.1E-09 79.2 3.6 35 55-89 2-37 (435)
220 KOG2311 NAD/FAD-utilizing prot 97.6 0.00036 7.7E-09 69.9 9.0 35 51-85 26-61 (679)
221 PLN02576 protoporphyrinogen ox 97.5 5.6E-05 1.2E-09 80.3 3.8 39 51-89 10-50 (496)
222 PRK06617 2-octaprenyl-6-methox 97.5 5.3E-05 1.1E-09 77.4 3.3 32 54-85 2-34 (374)
223 PRK09897 hypothetical protein; 97.5 0.00042 9.1E-09 73.3 9.9 32 54-85 2-36 (534)
224 TIGR03862 flavo_PP4765 unchara 97.5 0.00071 1.5E-08 68.2 10.3 88 181-302 57-145 (376)
225 PRK11883 protoporphyrinogen ox 97.5 7E-05 1.5E-09 78.5 3.3 35 55-89 2-39 (451)
226 TIGR01438 TGR thioredoxin and 97.5 0.0001 2.2E-09 77.8 4.2 32 53-84 2-34 (484)
227 PRK05732 2-octaprenyl-6-methox 97.5 8.1E-05 1.8E-09 76.6 3.4 33 52-84 2-38 (395)
228 PF06100 Strep_67kDa_ant: Stre 97.4 0.0044 9.6E-08 63.5 15.4 58 228-297 216-273 (500)
229 TIGR02352 thiamin_ThiO glycine 97.4 0.00035 7.7E-09 70.0 7.5 52 227-302 145-196 (337)
230 PRK07233 hypothetical protein; 97.4 0.00011 2.3E-09 76.7 3.7 35 55-89 1-36 (434)
231 TIGR03452 mycothione_red mycot 97.4 0.00012 2.7E-09 76.6 4.1 32 53-85 2-33 (452)
232 TIGR01789 lycopene_cycl lycope 97.4 0.00014 3E-09 74.0 4.0 31 55-85 1-34 (370)
233 PLN02568 polyamine oxidase 97.4 0.00015 3.2E-09 77.2 3.9 38 52-89 4-47 (539)
234 PRK10262 thioredoxin reductase 97.3 0.00013 2.8E-09 72.9 3.3 35 51-85 4-39 (321)
235 PRK07846 mycothione reductase; 97.3 0.00017 3.7E-09 75.5 4.1 32 53-85 1-32 (451)
236 PLN02927 antheraxanthin epoxid 97.3 0.00017 3.6E-09 77.8 4.0 36 50-85 78-114 (668)
237 TIGR00562 proto_IX_ox protopor 97.3 0.00016 3.4E-09 76.2 3.5 36 54-89 3-43 (462)
238 PF07992 Pyr_redox_2: Pyridine 97.3 0.00015 3.3E-09 66.8 3.0 31 55-85 1-32 (201)
239 PRK08294 phenol 2-monooxygenas 97.2 0.0003 6.6E-09 76.6 4.5 36 50-85 29-66 (634)
240 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00022 4.9E-09 72.4 3.2 32 54-85 3-35 (436)
241 COG3349 Uncharacterized conser 97.2 0.00028 6.2E-09 72.2 3.3 34 56-89 3-37 (485)
242 COG1148 HdrA Heterodisulfide r 97.1 0.00032 6.8E-09 70.5 3.4 33 53-85 124-157 (622)
243 PRK12416 protoporphyrinogen ox 97.1 0.00031 6.8E-09 73.9 3.3 35 55-89 3-44 (463)
244 TIGR02731 phytoene_desat phyto 97.1 0.00034 7.4E-09 73.4 3.4 35 55-89 1-36 (453)
245 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0019 4E-08 62.4 7.8 61 228-306 399-460 (520)
246 TIGR03315 Se_ygfK putative sel 97.1 0.00045 9.8E-09 77.7 4.3 37 52-88 536-573 (1012)
247 COG3075 GlpB Anaerobic glycero 97.0 0.00051 1.1E-08 65.8 3.2 33 53-85 2-35 (421)
248 PRK12831 putative oxidoreducta 97.0 0.00062 1.3E-08 71.4 4.2 37 51-87 138-175 (464)
249 PRK06912 acoL dihydrolipoamide 97.0 0.00057 1.2E-08 71.8 3.8 32 55-86 2-34 (458)
250 KOG2614 Kynurenine 3-monooxyge 96.9 0.00072 1.6E-08 67.1 3.9 35 53-87 2-37 (420)
251 KOG4716 Thioredoxin reductase 96.9 0.00082 1.8E-08 64.5 3.7 35 50-84 16-51 (503)
252 PLN02529 lysine-specific histo 96.9 0.0008 1.7E-08 73.6 3.8 38 51-88 158-196 (738)
253 PF13454 NAD_binding_9: FAD-NA 96.9 0.026 5.7E-07 49.7 12.9 29 57-85 1-35 (156)
254 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.00072 1.6E-08 69.1 3.2 32 54-85 1-33 (433)
255 TIGR03197 MnmC_Cterm tRNA U-34 96.8 0.0078 1.7E-07 61.6 10.6 52 227-303 143-194 (381)
256 PLN02328 lysine-specific histo 96.8 0.0011 2.3E-08 73.1 4.0 39 51-89 236-275 (808)
257 COG1232 HemY Protoporphyrinoge 96.8 0.001 2.3E-08 68.2 3.6 34 56-89 3-39 (444)
258 TIGR01316 gltA glutamate synth 96.8 0.0012 2.6E-08 69.1 4.1 37 51-87 131-168 (449)
259 PRK12810 gltD glutamate syntha 96.8 0.0012 2.6E-08 69.6 4.1 37 51-87 141-178 (471)
260 KOG0685 Flavin-containing amin 96.7 0.0013 2.9E-08 66.3 3.6 36 53-88 21-58 (498)
261 PLN02612 phytoene desaturase 96.7 0.0015 3.2E-08 70.4 4.2 37 51-87 91-128 (567)
262 TIGR02732 zeta_caro_desat caro 96.7 0.0013 2.8E-08 69.3 3.6 35 55-89 1-36 (474)
263 PLN02852 ferredoxin-NADP+ redu 96.6 0.0018 4E-08 67.8 4.4 37 52-88 25-64 (491)
264 PF00996 GDI: GDP dissociation 96.6 0.0013 2.8E-08 67.4 3.1 41 50-90 1-42 (438)
265 PF00070 Pyr_redox: Pyridine n 96.6 0.0019 4E-08 49.9 3.3 31 56-86 2-33 (80)
266 TIGR03219 salicylate_mono sali 96.6 0.0015 3.1E-08 67.8 3.2 31 55-85 2-34 (414)
267 PRK12779 putative bifunctional 96.6 0.0018 3.9E-08 73.4 4.1 36 52-87 305-341 (944)
268 PRK11749 dihydropyrimidine deh 96.6 0.0021 4.6E-08 67.5 4.2 37 51-87 138-175 (457)
269 PRK12778 putative bifunctional 96.6 0.002 4.3E-08 72.0 4.2 36 51-86 429-465 (752)
270 PLN02487 zeta-carotene desatur 96.5 0.0025 5.4E-08 68.1 4.6 37 52-88 74-111 (569)
271 PRK09853 putative selenate red 96.5 0.0021 4.5E-08 72.3 4.1 37 52-88 538-575 (1019)
272 KOG3855 Monooxygenase involved 96.5 0.0023 4.9E-08 63.4 3.8 37 49-85 32-73 (481)
273 PRK12769 putative oxidoreducta 96.5 0.002 4.3E-08 70.8 3.9 36 52-87 326-362 (654)
274 PRK04965 NADH:flavorubredoxin 96.5 0.022 4.7E-07 58.3 11.2 31 55-85 143-174 (377)
275 TIGR01350 lipoamide_DH dihydro 96.5 0.015 3.2E-07 61.2 10.2 32 54-85 171-203 (461)
276 KOG2403 Succinate dehydrogenas 96.4 0.0043 9.4E-08 63.6 5.3 35 51-85 53-88 (642)
277 TIGR03140 AhpF alkyl hydropero 96.4 0.038 8.3E-07 58.9 12.5 56 231-304 400-456 (515)
278 PRK15317 alkyl hydroperoxide r 96.4 0.036 7.7E-07 59.2 12.3 57 231-305 399-456 (517)
279 PRK12814 putative NADPH-depend 96.3 0.0035 7.5E-08 68.7 4.2 36 52-87 192-228 (652)
280 PRK07818 dihydrolipoamide dehy 96.3 0.025 5.4E-07 59.6 10.5 31 55-85 174-205 (466)
281 COG2907 Predicted NAD/FAD-bind 96.3 0.0036 7.8E-08 60.6 3.5 37 53-89 8-44 (447)
282 PRK09754 phenylpropionate diox 96.2 0.043 9.3E-07 56.5 11.4 31 55-85 146-177 (396)
283 PLN03000 amine oxidase 96.2 0.0042 9E-08 68.7 3.9 38 52-89 183-221 (881)
284 PRK05976 dihydrolipoamide dehy 96.1 0.04 8.6E-07 58.2 10.9 31 55-85 182-213 (472)
285 PRK08255 salicylyl-CoA 5-hydro 96.1 0.0037 8.1E-08 69.8 3.3 32 55-86 2-36 (765)
286 PRK12770 putative glutamate sy 96.1 0.0058 1.3E-07 61.8 4.3 35 53-87 18-53 (352)
287 PRK09564 coenzyme A disulfide 96.1 0.03 6.5E-07 58.6 9.7 32 54-85 150-182 (444)
288 TIGR01318 gltD_gamma_fam gluta 96.1 0.0052 1.1E-07 64.6 4.0 36 52-87 140-176 (467)
289 PRK06327 dihydrolipoamide dehy 96.0 0.035 7.7E-07 58.6 9.9 31 55-85 185-216 (475)
290 PLN02976 amine oxidase 95.9 0.0061 1.3E-07 70.1 3.9 38 51-88 691-729 (1713)
291 PRK14989 nitrite reductase sub 95.9 0.024 5.2E-07 63.8 8.6 58 231-309 199-256 (847)
292 PRK06567 putative bifunctional 95.9 0.0056 1.2E-07 68.2 3.4 34 52-85 382-416 (1028)
293 PRK06416 dihydrolipoamide dehy 95.9 0.047 1E-06 57.5 10.3 31 55-85 174-205 (462)
294 TIGR02053 MerA mercuric reduct 95.9 0.047 1E-06 57.4 10.0 32 54-85 167-199 (463)
295 TIGR01317 GOGAT_sm_gam glutama 95.8 0.0067 1.4E-07 64.1 3.6 34 52-85 142-176 (485)
296 PRK12809 putative oxidoreducta 95.8 0.0077 1.7E-07 65.9 4.0 36 52-87 309-345 (639)
297 PRK06370 mercuric reductase; V 95.8 0.06 1.3E-06 56.6 10.6 31 55-85 173-204 (463)
298 PTZ00188 adrenodoxin reductase 95.8 0.011 2.4E-07 61.3 4.6 36 54-89 40-77 (506)
299 PRK10262 thioredoxin reductase 95.7 0.14 3E-06 51.0 12.3 31 55-85 148-179 (321)
300 TIGR01316 gltA glutamate synth 95.7 0.066 1.4E-06 56.1 10.3 31 55-85 274-305 (449)
301 TIGR02374 nitri_red_nirB nitri 95.7 0.031 6.7E-07 62.7 8.2 31 55-85 142-173 (785)
302 KOG1276 Protoporphyrinogen oxi 95.7 0.01 2.2E-07 59.2 3.8 36 52-87 10-48 (491)
303 PRK14727 putative mercuric red 95.7 0.065 1.4E-06 56.6 10.1 30 55-84 190-220 (479)
304 PRK12771 putative glutamate sy 95.6 0.0092 2E-07 64.4 3.7 35 53-87 137-172 (564)
305 PRK06912 acoL dihydrolipoamide 95.6 0.091 2E-06 55.2 11.1 31 55-85 172-203 (458)
306 PRK06467 dihydrolipoamide dehy 95.6 0.074 1.6E-06 56.1 10.3 31 55-85 176-207 (471)
307 TIGR01292 TRX_reduct thioredox 95.5 0.21 4.5E-06 48.9 12.6 31 55-85 143-174 (300)
308 PRK12831 putative oxidoreducta 95.5 0.1 2.2E-06 54.9 10.7 31 55-85 283-314 (464)
309 PRK13984 putative oxidoreducta 95.4 0.014 3.1E-07 63.6 4.2 37 51-87 281-318 (604)
310 COG1252 Ndh NADH dehydrogenase 95.4 0.091 2E-06 53.4 9.6 33 53-85 155-201 (405)
311 COG4529 Uncharacterized protei 95.4 0.27 5.8E-06 50.5 12.8 32 54-85 2-37 (474)
312 PRK05249 soluble pyridine nucl 95.4 0.094 2E-06 55.2 10.2 31 55-85 177-208 (461)
313 PRK07846 mycothione reductase; 95.3 0.11 2.4E-06 54.4 10.3 32 54-85 167-199 (451)
314 COG1249 Lpd Pyruvate/2-oxoglut 95.3 0.17 3.7E-06 52.6 11.4 30 56-85 176-206 (454)
315 TIGR03385 CoA_CoA_reduc CoA-di 95.2 0.12 2.7E-06 53.7 10.4 31 55-85 139-170 (427)
316 TIGR01421 gluta_reduc_1 glutat 95.2 0.08 1.7E-06 55.5 8.9 31 55-85 168-199 (450)
317 PRK06115 dihydrolipoamide dehy 95.1 0.17 3.6E-06 53.3 11.1 31 55-85 176-207 (466)
318 PRK09564 coenzyme A disulfide 95.1 0.017 3.7E-07 60.4 3.5 58 228-309 200-257 (444)
319 PRK06116 glutathione reductase 95.1 0.11 2.4E-06 54.4 9.5 31 55-85 169-200 (450)
320 PLN02507 glutathione reductase 95.0 0.14 2.9E-06 54.5 10.0 31 55-85 205-236 (499)
321 PRK13512 coenzyme A disulfide 94.9 0.019 4.1E-07 59.9 3.3 32 55-86 3-37 (438)
322 PRK07845 flavoprotein disulfid 94.9 0.16 3.4E-06 53.5 10.0 31 55-85 179-210 (466)
323 PRK09754 phenylpropionate diox 94.9 0.02 4.3E-07 59.0 3.1 33 54-86 4-39 (396)
324 PRK13748 putative mercuric red 94.8 0.12 2.7E-06 55.8 9.2 30 55-84 272-302 (561)
325 KOG1800 Ferredoxin/adrenodoxin 94.8 0.031 6.8E-07 55.0 4.0 35 55-89 22-59 (468)
326 PRK08010 pyridine nucleotide-d 94.8 0.14 3.1E-06 53.4 9.3 31 55-85 160-191 (441)
327 PTZ00318 NADH dehydrogenase-li 94.7 0.027 5.9E-07 58.5 3.8 37 51-87 8-45 (424)
328 PRK14694 putative mercuric red 94.6 0.14 3E-06 54.0 8.9 30 55-84 180-210 (468)
329 KOG1439 RAB proteins geranylge 94.5 0.027 5.8E-07 55.8 2.8 42 51-92 2-44 (440)
330 TIGR01424 gluta_reduc_2 glutat 94.3 0.2 4.4E-06 52.4 9.3 31 55-85 168-199 (446)
331 KOG4405 GDP dissociation inhib 94.3 0.051 1.1E-06 53.9 4.1 40 50-89 5-45 (547)
332 PRK12770 putative glutamate sy 94.1 0.36 7.8E-06 48.8 10.2 31 55-85 174-206 (352)
333 TIGR01438 TGR thioredoxin and 94.0 0.25 5.4E-06 52.2 9.1 30 55-84 182-212 (484)
334 COG0493 GltD NADPH-dependent g 93.7 0.058 1.3E-06 56.1 3.7 35 54-88 124-159 (457)
335 COG5044 MRS6 RAB proteins gera 93.7 0.075 1.6E-06 52.2 4.0 41 52-92 5-46 (434)
336 TIGR01423 trypano_reduc trypan 93.6 0.38 8.3E-06 50.8 9.8 31 55-85 189-223 (486)
337 PRK11749 dihydropyrimidine deh 93.6 0.33 7.1E-06 51.0 9.2 31 55-85 275-307 (457)
338 PRK04965 NADH:flavorubredoxin 93.6 0.056 1.2E-06 55.2 3.3 59 228-309 192-250 (377)
339 COG1206 Gid NAD(FAD)-utilizing 93.6 0.059 1.3E-06 52.1 3.1 31 55-85 5-36 (439)
340 TIGR03169 Nterm_to_SelD pyridi 93.4 0.064 1.4E-06 54.5 3.4 33 55-87 1-37 (364)
341 KOG3851 Sulfide:quinone oxidor 92.7 0.1 2.2E-06 50.2 3.2 39 49-87 35-76 (446)
342 PTZ00052 thioredoxin reductase 92.6 0.6 1.3E-05 49.6 9.3 30 55-84 184-214 (499)
343 TIGR01372 soxA sarcosine oxida 92.5 1.4 2.9E-05 51.1 12.7 59 231-308 363-421 (985)
344 PRK12778 putative bifunctional 92.2 0.71 1.5E-05 51.8 9.8 31 55-85 572-604 (752)
345 PF13434 K_oxygenase: L-lysine 92.2 0.99 2.1E-05 45.3 9.8 36 50-85 187-225 (341)
346 PF02558 ApbA: Ketopantoate re 91.7 0.15 3.3E-06 44.4 3.0 30 56-85 1-31 (151)
347 COG0446 HcaD Uncharacterized N 91.6 0.14 3.1E-06 52.6 3.3 35 53-87 136-171 (415)
348 TIGR01318 gltD_gamma_fam gluta 91.6 1.3 2.8E-05 46.7 10.4 31 55-85 284-316 (467)
349 KOG1336 Monodehydroascorbate/f 91.6 0.97 2.1E-05 46.3 8.9 56 229-305 265-320 (478)
350 COG1252 Ndh NADH dehydrogenase 91.6 0.18 3.8E-06 51.3 3.7 34 55-88 5-41 (405)
351 COG0569 TrkA K+ transport syst 91.3 0.18 3.8E-06 47.4 3.2 31 55-85 2-33 (225)
352 PRK12779 putative bifunctional 91.1 2.3 5E-05 48.8 12.4 31 55-85 449-480 (944)
353 PRK12769 putative oxidoreducta 90.4 1.9 4E-05 47.6 10.6 31 55-85 470-502 (654)
354 KOG0404 Thioredoxin reductase 89.9 0.26 5.7E-06 45.1 2.8 33 53-85 8-41 (322)
355 KOG2755 Oxidoreductase [Genera 89.8 0.24 5.3E-06 46.4 2.6 30 56-85 2-34 (334)
356 PRK06567 putative bifunctional 89.7 0.74 1.6E-05 52.0 6.7 35 226-265 647-681 (1028)
357 PRK12814 putative NADPH-depend 89.4 2.5 5.5E-05 46.5 10.6 31 55-85 325-357 (652)
358 PF01210 NAD_Gly3P_dh_N: NAD-d 89.1 0.28 6.1E-06 43.2 2.4 30 56-85 2-32 (157)
359 PRK05708 2-dehydropantoate 2-r 88.9 0.35 7.5E-06 47.8 3.2 31 55-85 4-35 (305)
360 PF02737 3HCDH_N: 3-hydroxyacy 88.8 0.34 7.3E-06 43.8 2.8 30 56-85 2-32 (180)
361 KOG0399 Glutamate synthase [Am 88.6 0.46 1E-05 53.2 4.0 37 52-88 1784-1821(2142)
362 PRK07251 pyridine nucleotide-d 88.6 0.36 7.8E-06 50.4 3.3 31 55-85 159-190 (438)
363 PF03721 UDPG_MGDP_dh_N: UDP-g 88.4 0.46 1E-05 43.1 3.4 30 56-85 3-33 (185)
364 TIGR02374 nitri_red_nirB nitri 88.1 0.37 8E-06 54.2 3.1 59 228-309 191-249 (785)
365 PF13738 Pyr_redox_3: Pyridine 87.9 0.45 9.7E-06 43.6 3.1 32 54-85 168-200 (203)
366 PRK06249 2-dehydropantoate 2-r 87.3 0.54 1.2E-05 46.7 3.4 31 55-85 7-38 (313)
367 COG3486 IucD Lysine/ornithine 87.2 0.78 1.7E-05 46.0 4.4 36 50-85 2-39 (436)
368 PRK01438 murD UDP-N-acetylmura 87.0 0.52 1.1E-05 49.9 3.3 31 55-85 18-49 (480)
369 PRK02705 murD UDP-N-acetylmura 86.1 0.59 1.3E-05 49.1 3.2 31 56-86 3-34 (459)
370 PRK13512 coenzyme A disulfide 86.1 0.6 1.3E-05 48.7 3.2 31 55-85 150-181 (438)
371 PRK06129 3-hydroxyacyl-CoA deh 86.1 0.57 1.2E-05 46.4 2.8 31 55-85 4-35 (308)
372 PRK14989 nitrite reductase sub 86.1 0.66 1.4E-05 52.5 3.6 33 55-87 5-42 (847)
373 KOG3923 D-aspartate oxidase [A 85.5 0.75 1.6E-05 44.1 3.1 33 53-85 3-43 (342)
374 PRK12921 2-dehydropantoate 2-r 85.4 0.69 1.5E-05 45.6 3.1 28 56-83 3-31 (305)
375 PF01593 Amino_oxidase: Flavin 85.4 0.59 1.3E-05 48.0 2.7 27 63-89 1-28 (450)
376 PRK06522 2-dehydropantoate 2-r 85.3 0.73 1.6E-05 45.3 3.2 29 56-84 3-32 (304)
377 TIGR02731 phytoene_desat phyto 85.2 1.8 3.9E-05 45.4 6.3 55 228-298 222-276 (453)
378 TIGR03452 mycothione_red mycot 85.1 0.73 1.6E-05 48.3 3.2 31 55-85 171-202 (452)
379 PRK06292 dihydrolipoamide dehy 85.0 0.74 1.6E-05 48.4 3.2 31 55-85 171-202 (460)
380 PRK04148 hypothetical protein; 84.8 0.9 1.9E-05 38.6 3.0 30 55-85 19-49 (134)
381 KOG1335 Dihydrolipoamide dehyd 84.8 7.9 0.00017 38.8 9.7 56 231-309 264-320 (506)
382 PF01488 Shikimate_DH: Shikima 84.4 0.86 1.9E-05 39.0 2.8 32 54-85 13-46 (135)
383 PF02254 TrkA_N: TrkA-N domain 84.3 0.92 2E-05 37.4 2.9 30 56-85 1-31 (116)
384 PF00899 ThiF: ThiF family; I 84.3 0.99 2.1E-05 38.5 3.2 32 54-85 3-36 (135)
385 PRK14106 murD UDP-N-acetylmura 84.0 0.88 1.9E-05 47.7 3.3 31 55-85 7-38 (450)
386 PF13241 NAD_binding_7: Putati 84.0 0.75 1.6E-05 37.2 2.1 31 54-84 8-39 (103)
387 PTZ00153 lipoamide dehydrogena 83.9 0.92 2E-05 49.7 3.4 31 55-85 314-345 (659)
388 PRK06718 precorrin-2 dehydroge 83.6 0.98 2.1E-05 41.6 3.0 30 55-84 12-42 (202)
389 PTZ00058 glutathione reductase 83.5 0.94 2E-05 48.7 3.2 31 55-85 239-270 (561)
390 TIGR03143 AhpF_homolog putativ 83.5 0.96 2.1E-05 48.8 3.4 31 55-85 145-176 (555)
391 PRK08293 3-hydroxybutyryl-CoA 83.2 1 2.2E-05 44.1 3.1 31 55-85 5-36 (287)
392 PRK06719 precorrin-2 dehydroge 83.2 1.1 2.3E-05 39.5 3.0 28 55-82 15-43 (157)
393 PRK09260 3-hydroxybutyryl-CoA 83.0 0.97 2.1E-05 44.2 2.9 30 56-85 4-34 (288)
394 PRK07066 3-hydroxybutyryl-CoA 82.5 1.2 2.5E-05 44.2 3.3 30 56-85 10-40 (321)
395 PLN02546 glutathione reductase 82.4 1.1 2.4E-05 48.2 3.3 31 55-85 254-285 (558)
396 PRK08229 2-dehydropantoate 2-r 82.2 1.1 2.5E-05 44.9 3.2 30 55-84 4-34 (341)
397 PRK15116 sulfur acceptor prote 82.0 1.3 2.8E-05 42.7 3.2 33 53-85 30-64 (268)
398 PRK07819 3-hydroxybutyryl-CoA 82.0 1.3 2.7E-05 43.4 3.2 31 55-85 7-38 (286)
399 COG1004 Ugd Predicted UDP-gluc 81.8 1.3 2.9E-05 44.4 3.3 31 55-85 2-33 (414)
400 TIGR01470 cysG_Nterm siroheme 81.4 1.3 2.9E-05 40.8 3.0 30 55-84 11-41 (205)
401 TIGR02354 thiF_fam2 thiamine b 81.2 1.4 3E-05 40.5 3.1 33 53-85 21-55 (200)
402 TIGR00518 alaDH alanine dehydr 80.9 1.3 2.9E-05 45.0 3.1 33 53-85 167-200 (370)
403 cd01483 E1_enzyme_family Super 80.9 1.4 3.1E-05 37.9 2.9 30 56-85 2-33 (143)
404 cd01487 E1_ThiF_like E1_ThiF_l 80.6 1.7 3.6E-05 39.0 3.3 30 56-85 2-33 (174)
405 KOG2018 Predicted dinucleotide 80.4 1.6 3.5E-05 42.0 3.2 34 50-84 72-107 (430)
406 TIGR02732 zeta_caro_desat caro 80.3 3.2 7E-05 43.8 5.9 61 227-303 227-289 (474)
407 COG1748 LYS9 Saccharopine dehy 80.0 1.7 3.7E-05 44.0 3.4 31 55-85 3-35 (389)
408 PRK06035 3-hydroxyacyl-CoA deh 79.9 1.5 3.3E-05 42.9 3.1 30 56-85 6-36 (291)
409 PF01262 AlaDh_PNT_C: Alanine 79.7 1.6 3.5E-05 38.8 2.9 32 54-85 21-53 (168)
410 COG0686 Ald Alanine dehydrogen 79.5 1.9 4.1E-05 41.7 3.4 34 52-85 167-201 (371)
411 PRK07530 3-hydroxybutyryl-CoA 79.4 1.6 3.5E-05 42.7 3.1 30 56-85 7-37 (292)
412 cd01075 NAD_bind_Leu_Phe_Val_D 79.3 1.7 3.7E-05 40.0 3.0 31 55-85 30-61 (200)
413 PRK14620 NAD(P)H-dependent gly 78.9 1.7 3.6E-05 43.4 3.0 30 56-85 3-33 (326)
414 PRK12475 thiamine/molybdopteri 78.8 1.7 3.6E-05 43.6 3.0 33 53-85 24-58 (338)
415 COG4716 Myosin-crossreactive a 78.8 2.7 5.8E-05 41.7 4.2 33 55-87 24-61 (587)
416 PRK07688 thiamine/molybdopteri 78.5 2 4.3E-05 43.1 3.4 33 53-85 24-58 (339)
417 PRK12549 shikimate 5-dehydroge 78.4 1.8 4E-05 42.2 3.1 32 54-85 128-161 (284)
418 PRK08328 hypothetical protein; 78.2 1.8 4E-05 40.7 2.9 33 53-85 27-61 (231)
419 TIGR02355 moeB molybdopterin s 78.2 2.1 4.5E-05 40.7 3.3 34 52-85 23-58 (240)
420 PLN02172 flavin-containing mon 78.2 2.1 4.7E-05 44.9 3.7 31 55-85 206-237 (461)
421 PTZ00318 NADH dehydrogenase-li 78.0 1.9 4.2E-05 44.7 3.3 31 55-85 175-220 (424)
422 TIGR02356 adenyl_thiF thiazole 78.0 2 4.3E-05 39.6 3.0 34 52-85 20-55 (202)
423 PRK14618 NAD(P)H-dependent gly 77.7 2 4.3E-05 42.9 3.2 31 55-85 6-37 (328)
424 cd00401 AdoHcyase S-adenosyl-L 77.7 2 4.3E-05 44.1 3.2 31 55-85 204-235 (413)
425 cd01080 NAD_bind_m-THF_DH_Cycl 77.6 2.6 5.7E-05 37.5 3.6 33 52-84 43-77 (168)
426 COG1893 ApbA Ketopantoate redu 77.4 1.9 4.1E-05 42.6 2.8 30 56-85 3-33 (307)
427 TIGR01763 MalateDH_bact malate 77.4 2.1 4.6E-05 42.2 3.2 29 56-84 4-34 (305)
428 PRK05808 3-hydroxybutyryl-CoA 77.4 1.9 4.1E-05 42.0 2.9 31 55-85 5-36 (282)
429 PRK12548 shikimate 5-dehydroge 77.2 2 4.4E-05 42.0 3.0 31 55-85 128-160 (289)
430 KOG1346 Programmed cell death 77.1 11 0.00023 38.2 7.8 60 228-310 402-461 (659)
431 cd00757 ThiF_MoeB_HesA_family 77.1 2.1 4.5E-05 40.3 2.9 33 53-85 21-55 (228)
432 PRK08644 thiamine biosynthesis 76.9 2.2 4.7E-05 39.6 3.0 33 53-85 28-62 (212)
433 cd05311 NAD_bind_2_malic_enz N 76.6 2 4.4E-05 40.3 2.7 31 55-85 27-61 (226)
434 TIGR01381 E1_like_apg7 E1-like 76.3 2.3 5.1E-05 45.7 3.3 35 53-87 338-374 (664)
435 PRK05690 molybdopterin biosynt 76.2 2.3 5E-05 40.5 3.0 34 52-85 31-66 (245)
436 TIGR03736 PRTRC_ThiF PRTRC sys 76.1 2.6 5.7E-05 39.9 3.3 35 51-85 9-55 (244)
437 TIGR03026 NDP-sugDHase nucleot 76.0 2.7 5.8E-05 43.5 3.7 30 56-85 3-33 (411)
438 PRK06153 hypothetical protein; 76.0 2.7 5.9E-05 42.4 3.5 33 53-85 176-210 (393)
439 PRK06130 3-hydroxybutyryl-CoA 75.8 2.4 5.1E-05 42.0 3.1 31 55-85 6-37 (311)
440 cd01486 Apg7 Apg7 is an E1-lik 75.4 2.9 6.2E-05 40.8 3.4 31 56-86 2-34 (307)
441 PF13478 XdhC_C: XdhC Rossmann 75.2 3.3 7.1E-05 35.5 3.4 31 56-86 1-32 (136)
442 PRK11064 wecC UDP-N-acetyl-D-m 75.1 2.7 5.9E-05 43.5 3.4 30 56-85 6-36 (415)
443 COG2072 TrkA Predicted flavopr 75.0 3.2 6.9E-05 43.4 3.9 31 55-85 177-208 (443)
444 cd01484 E1-2_like Ubiquitin ac 75.0 2.6 5.7E-05 39.7 3.0 30 56-85 2-33 (234)
445 PLN02487 zeta-carotene desatur 74.8 5.7 0.00012 42.8 5.8 63 227-303 303-365 (569)
446 PLN02545 3-hydroxybutyryl-CoA 74.7 2.7 6E-05 41.2 3.2 30 56-85 7-37 (295)
447 PRK14027 quinate/shikimate deh 74.5 2.8 6.1E-05 40.8 3.2 31 55-85 129-161 (283)
448 PRK00094 gpsA NAD(P)H-dependen 74.5 2.8 6E-05 41.6 3.3 31 55-85 3-34 (325)
449 cd05292 LDH_2 A subgroup of L- 74.4 2.9 6.3E-05 41.3 3.3 31 55-85 2-35 (308)
450 cd01485 E1-1_like Ubiquitin ac 74.1 3.1 6.8E-05 38.2 3.2 33 53-85 19-53 (198)
451 PRK08223 hypothetical protein; 74.1 2.9 6.3E-05 40.5 3.1 34 52-85 26-61 (287)
452 KOG2304 3-hydroxyacyl-CoA dehy 74.1 3 6.5E-05 38.4 2.9 32 54-85 12-44 (298)
453 PRK02472 murD UDP-N-acetylmura 73.7 2.6 5.7E-05 44.1 2.9 30 56-85 8-38 (447)
454 TIGR00936 ahcY adenosylhomocys 73.1 3.2 7E-05 42.5 3.3 31 55-85 197-228 (406)
455 COG1179 Dinucleotide-utilizing 72.9 4.3 9.4E-05 37.9 3.7 35 54-88 31-67 (263)
456 TIGR02853 spore_dpaA dipicolin 72.8 3 6.6E-05 40.7 2.9 31 55-85 153-184 (287)
457 COG3634 AhpF Alkyl hydroperoxi 72.6 3.1 6.8E-05 40.9 2.8 34 52-85 353-387 (520)
458 cd05291 HicDH_like L-2-hydroxy 72.5 3.4 7.4E-05 40.8 3.3 30 56-85 3-35 (306)
459 cd01488 Uba3_RUB Ubiquitin act 72.4 3.2 7E-05 40.4 3.0 30 56-85 2-33 (291)
460 PRK12550 shikimate 5-dehydroge 72.4 3.4 7.5E-05 39.9 3.2 31 55-85 124-156 (272)
461 PRK15057 UDP-glucose 6-dehydro 72.3 3.4 7.4E-05 42.3 3.3 30 56-85 3-32 (388)
462 cd01492 Aos1_SUMO Ubiquitin ac 72.3 3.6 7.9E-05 37.7 3.2 33 53-85 21-55 (197)
463 cd01489 Uba2_SUMO Ubiquitin ac 72.1 3.2 6.9E-05 40.9 2.9 30 56-85 2-33 (312)
464 TIGR02279 PaaC-3OHAcCoADH 3-hy 72.0 3.2 6.9E-05 44.1 3.0 30 56-85 8-38 (503)
465 TIGR01809 Shik-DH-AROM shikima 71.9 3.5 7.7E-05 40.1 3.2 32 54-85 126-159 (282)
466 PLN02520 bifunctional 3-dehydr 71.8 3.2 7E-05 44.3 3.1 30 55-84 381-411 (529)
467 PRK10669 putative cation:proto 71.2 6.9 0.00015 42.3 5.5 33 53-85 417-450 (558)
468 TIGR01915 npdG NADPH-dependent 70.9 4 8.6E-05 38.1 3.2 30 56-85 3-34 (219)
469 PLN02572 UDP-sulfoquinovose sy 70.9 3.6 7.9E-05 42.9 3.2 29 55-83 49-79 (442)
470 PRK11730 fadB multifunctional 70.9 3.7 8E-05 45.7 3.4 30 56-85 316-346 (715)
471 cd00755 YgdL_like Family of ac 70.5 3.7 8.1E-05 38.6 2.9 33 53-85 11-45 (231)
472 TIGR02437 FadB fatty oxidation 70.1 3.9 8.5E-05 45.4 3.4 31 55-85 315-346 (714)
473 COG1250 FadB 3-hydroxyacyl-CoA 70.0 4.4 9.5E-05 39.7 3.3 30 56-85 6-36 (307)
474 TIGR00507 aroE shikimate 5-deh 69.5 4.4 9.5E-05 39.2 3.2 31 55-85 119-150 (270)
475 PRK08762 molybdopterin biosynt 69.5 4.3 9.3E-05 41.4 3.3 34 52-85 134-169 (376)
476 PRK05476 S-adenosyl-L-homocyst 69.3 4.2 9.1E-05 41.9 3.2 31 55-85 214-245 (425)
477 PRK07417 arogenate dehydrogena 69.3 3.9 8.5E-05 39.7 2.9 30 56-85 3-33 (279)
478 PLN02353 probable UDP-glucose 69.3 4.4 9.5E-05 42.6 3.4 31 55-85 3-36 (473)
479 COG3486 IucD Lysine/ornithine 69.3 11 0.00025 38.0 6.0 56 230-303 289-346 (436)
480 PLN02612 phytoene desaturase 69.2 7.4 0.00016 42.1 5.2 47 229-296 318-364 (567)
481 PLN02494 adenosylhomocysteinas 69.2 4.6 0.0001 42.0 3.4 31 55-85 256-287 (477)
482 PRK09424 pntA NAD(P) transhydr 69.2 4 8.8E-05 43.1 3.1 33 53-85 165-198 (509)
483 PRK05600 thiamine biosynthesis 68.9 4.1 8.9E-05 41.3 3.0 33 53-85 41-75 (370)
484 PRK08017 oxidoreductase; Provi 68.7 5 0.00011 38.0 3.4 30 56-85 5-36 (256)
485 PF00670 AdoHcyase_NAD: S-aden 68.7 3.5 7.6E-05 36.2 2.1 30 56-85 26-56 (162)
486 PRK08268 3-hydroxy-acyl-CoA de 68.5 4.4 9.5E-05 43.1 3.2 30 56-85 10-40 (507)
487 PRK14619 NAD(P)H-dependent gly 68.4 4.8 0.0001 39.8 3.3 31 55-85 6-37 (308)
488 PRK09496 trkA potassium transp 68.2 4.3 9.4E-05 42.4 3.1 31 55-85 2-33 (453)
489 PRK05597 molybdopterin biosynt 68.2 4.6 9.9E-05 40.8 3.1 33 53-85 28-62 (355)
490 cd01339 LDH-like_MDH L-lactate 67.9 4.2 9.1E-05 40.0 2.8 30 56-85 1-32 (300)
491 PRK08306 dipicolinate synthase 67.7 4.8 0.0001 39.5 3.1 32 54-85 153-185 (296)
492 cd01490 Ube1_repeat2 Ubiquitin 67.0 4.7 0.0001 41.6 3.0 30 56-85 2-38 (435)
493 COG1251 NirB NAD(P)H-nitrite r 66.9 14 0.0003 40.4 6.4 59 228-309 196-254 (793)
494 cd05191 NAD_bind_amino_acid_DH 66.9 6.1 0.00013 30.6 3.0 29 55-83 25-55 (86)
495 PRK07233 hypothetical protein; 66.9 8.2 0.00018 39.9 4.9 54 227-303 206-259 (434)
496 PRK00258 aroE shikimate 5-dehy 66.8 4.9 0.00011 39.0 3.0 31 55-85 125-157 (278)
497 PF00056 Ldh_1_N: lactate/mala 66.3 5.9 0.00013 34.1 3.0 31 55-85 2-36 (141)
498 PRK06223 malate dehydrogenase; 66.2 5.7 0.00012 39.2 3.3 31 55-85 4-36 (307)
499 PRK07531 bifunctional 3-hydrox 65.9 5.4 0.00012 42.4 3.3 30 56-85 7-37 (495)
500 PRK07878 molybdopterin biosynt 65.9 5.2 0.00011 41.0 3.1 34 52-85 41-76 (392)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=6e-78 Score=636.54 Aligned_cols=460 Identities=49% Similarity=0.852 Sum_probs=370.7
Q ss_pred CCcccEEEECCCCchHHHHhhhhccCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceec
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVL 130 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 130 (523)
..+|||||||+|.+||++|.+|+++.+|||||+|+.+..++.......+.... ....|.+.+|.....+++.+.+|++|
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~-~d~~~~~~~q~~~~~~~~~~~rGr~L 131 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGL-ADTSPTSASQAFISTDGVINARARVL 131 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcc-cccCCccccccccCCCceecccccee
Confidence 66799999999999999999999999999999998654444443333332221 12345566777777788899999999
Q ss_pred ccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeee
Q 009873 131 GGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGG 210 (523)
Q Consensus 131 GG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 210 (523)
||+|.+|+|++.|++.++++..+|+++.+.++|++.|+.....|...++...+.+++.+.|++++++...+...|...+.
T Consensus 132 GGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~ 211 (587)
T PLN02785 132 GGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGG 211 (587)
T ss_pred cchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHHHHHcCCCccCCCCCCCccceeeeE
Confidence 99999999999999998888789999999999999998766666677888999999999999888877666666666677
Q ss_pred eEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcE
Q 009873 211 TAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290 (523)
Q Consensus 211 ~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~V 290 (523)
+.++..|.|++++.+++.+.+.|++|+++++|++|+++++++ ..+++||++.+.+|+ .+++.. ..+++++|
T Consensus 212 ~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~--~~ra~GV~~~~~~g~---~~~~~~----~~~~~~eV 282 (587)
T PLN02785 212 TIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGK--RPRATGVIFKDENGN---QHQAFL----SNNKGSEI 282 (587)
T ss_pred EEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCCC--CceEEEEEEEECCCc---eEEEEe----ecccCceE
Confidence 777778999998887777778999999999999999986421 128999999886676 444421 01136899
Q ss_pred EEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEEEecCCCCCCCCCcc-----eeeeeec---
Q 009873 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPE-----VVAGVLP--- 362 (523)
Q Consensus 291 ILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~-----~~g~~~~--- 362 (523)
|||||+++||+|||+|||||.++|+++||+++.++|+||+||+||+...+.+.... +......+ ..|.|..
T Consensus 283 ILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 361 (587)
T PLN02785 283 ILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKA-PVEQSLIQTVGITKMGVYIEASS 361 (587)
T ss_pred EecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCC-CchhhhHhhhhhhccccceeccc
Confidence 99999999999999999999999999999999999999999999999877754321 11000000 0000100
Q ss_pred ---------------------------CC--------------CCC--Cc---ccEEeeecCcCcceEEEecCCCCCCCC
Q 009873 363 ---------------------------IS--------------SNA--SR---MPIAAKLAFPISKGKLELDSTDPRQNP 396 (523)
Q Consensus 363 ---------------------------~~--------------~~~--~~---~~~~~~~~~p~s~g~v~l~~~d~~~~p 396 (523)
.. ... .. ..+...++.|.|||+|+|.++||.+.|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P 441 (587)
T PLN02785 362 GFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNP 441 (587)
T ss_pred ccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCC
Confidence 00 000 00 123456679999999999999999999
Q ss_pred eeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCC-----------------CCCCCCCHHHHHHHHHccccccc
Q 009873 397 SIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKP-----------------QEKLMSNSDELRKLCKNNVRTFY 459 (523)
Q Consensus 397 ~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 459 (523)
.|++||+.+|.|++.+.++++.++++++...+..+...+. .|...+++++|++|+++...+.|
T Consensus 442 ~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t~~ 521 (587)
T PLN02785 442 SVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIW 521 (587)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCCCHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999988776642211 12224577899999999999999
Q ss_pred ccccceecccccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhh
Q 009873 460 HYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREI 521 (523)
Q Consensus 460 H~~Gt~~MG~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~~ 521 (523)
|++|||+||+|||+++||||++||||||+|+||.+|++||++|+||+|+|+|+.|++++++.
T Consensus 522 H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~ 583 (587)
T PLN02785 522 HYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGR 583 (587)
T ss_pred CCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=3.3e-76 Score=598.38 Aligned_cols=452 Identities=37% Similarity=0.543 Sum_probs=351.7
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhcc--CeeEEEecCCCCCCCCCccccchhccccC---CCCCCccccccC----c
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLL---QTDEYTSVAQSF----I 117 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Laeg--~~VlvlE~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~ 117 (523)
......+||+||||||.|||++|.+|+|+ .||||||+|+.+ +...+++.....++ .+..|.+.|+.. .
T Consensus 51 ~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m 127 (623)
T KOG1238|consen 51 GSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAM 127 (623)
T ss_pred ccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccChhhhhhh
Confidence 34467899999999999999999999994 999999999855 23334333332222 233567777765 5
Q ss_pred CCCceeecCceecccccccCCccccCCChhhHhh------CCCCHHHHHHHhHhhhccccCCCCCC--------------
Q 009873 118 STDGVQNHRGRVLGGSSAINGGFYSRAREDFVKK------AGWDEELVKKAYEWVESKVVFPPELT-------------- 177 (523)
Q Consensus 118 ~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~------~~w~~~~~~~~~~~~~~~~~~~p~~~-------------- 177 (523)
.++...|.|||++||+|.+|+|+|.|+.+.++++ .+|+++++.+||+|.|+.....++..
T Consensus 128 ~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~ 207 (623)
T KOG1238|consen 128 SEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAG 207 (623)
T ss_pred cCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccc
Confidence 6788999999999999999999999998544432 46999999999999999876554333
Q ss_pred ----hhHHHHHHHHHHcCCC--CCCCCCcCCCCcceeeeeEEcCCCeeechHhh-hh-h-CCCCCeEEEeccEEEEEEEc
Q 009873 178 ----PWQSVVEFGLLEAGIL--PYNGYSLEHIEGTKIGGTAFDQCGKRHTSADL-LE-A-GNPKNLVVLLNATVNNIIFS 248 (523)
Q Consensus 178 ----~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~-~-~~~~g~~i~~~~~V~~l~~~ 248 (523)
+....+.++..+.|.. ++++... .+... .-.-.++|.|+++... +. . ..++|+.+..++.|++|++|
T Consensus 208 ~~~~~~~~~~~~ag~e~G~~~~D~nG~~~---tg~~~-l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D 283 (623)
T KOG1238|consen 208 VYPNNLFTAFHRAGTEIGGSIFDRNGERH---TGASL-LQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLID 283 (623)
T ss_pred cccCchhhHhHHhHHhcCCCccCCCCccc---cchhh-hhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEc
Confidence 3344555566666631 1122111 11110 0111356778776654 44 3 34789999999999999999
Q ss_pred CCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCccc
Q 009873 249 NNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEV 328 (523)
Q Consensus 249 ~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~v 328 (523)
..++ ++.||++....|+ .+++++ +|+||||||+|+||+|||.|||||.+||+++|||++.++|+|
T Consensus 284 ~~~~----~a~gv~~~~~~~~---~~~v~a--------~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~V 348 (623)
T KOG1238|consen 284 PAGK----RAKGVEFVRDGGK---EHTVKA--------RKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGV 348 (623)
T ss_pred CCCc----eEEEEEEEecCce---eeeecc--------cceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCccc
Confidence 8765 9999999884477 888887 899999999999999999999999999999999999999999
Q ss_pred ccccccCcCceEEEecCCCCCCCCCcc------------------------eeeeeecCCC-------------------
Q 009873 329 GEGMQDNPCIAKLVDTMPQKRLPEPPE------------------------VVAGVLPISS------------------- 365 (523)
Q Consensus 329 G~~l~dh~~~~~~~~~~~~~~~~~~~~------------------------~~g~~~~~~~------------------- 365 (523)
|+||+||+...++..... +......+ ..+ |+....
T Consensus 349 G~nLqDH~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~-f~~t~~~~~~~~~PD~~~~~~~~~~ 426 (623)
T KOG1238|consen 349 GQNLQDHPMNPGFVFSTN-PVELSLIRLVGITTVGQYLEGGSGPLASPGVETLG-FINTVSSNLSLDWPDIELHFVAGSL 426 (623)
T ss_pred ccccccccccceeeecCC-CccccccccccchHHHHHHHcCCCCcccCcceeeE-EeccccccCcCCCCCeeEEeccccc
Confidence 999999999876643322 21111100 011 111100
Q ss_pred ------------C------------CCcccEEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHH
Q 009873 366 ------------N------------ASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDK 421 (523)
Q Consensus 366 ------------~------------~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~ 421 (523)
+ ...+.++..++.|.|+|+|.|.++||.+.|+|++||+.+|+|++.+.++++.+.+
T Consensus 427 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~ 506 (623)
T KOG1238|consen 427 SSDGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIR 506 (623)
T ss_pred cccchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHH
Confidence 0 0013356777899999999999999999999999999999999999999999999
Q ss_pred HhcccccccccCCCCC---CC----CCCCHHHHHHHHHcccccccccccceecc------cccCCCCcEeccCCcEEeec
Q 009873 422 VTKSQSVSSFLGIKPQ---EK----LMSNSDELRKLCKNNVRTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDG 488 (523)
Q Consensus 422 i~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG------~VvD~~~rv~g~~nL~V~D~ 488 (523)
+.+...++.+..-... |. ...++++|++|++....+.||++|||+|| +|||+++||||++||+|+|+
T Consensus 507 l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDa 586 (623)
T KOG1238|consen 507 LSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDA 586 (623)
T ss_pred HHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeec
Confidence 9999888877643222 11 24689999999999999999999999999 99999999999999999999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhc
Q 009873 489 STFQESPGTNPMATVMMLGRYQGVKLVEERREIC 522 (523)
Q Consensus 489 Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~~~ 522 (523)
|+||.++++||..|+||||+|.|+.|+++++.+.
T Consensus 587 SimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~ 620 (623)
T KOG1238|consen 587 SIMPESPSGNPNAPVMMIGEKAADMIKEEWLANK 620 (623)
T ss_pred cccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999988653
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=7.9e-70 Score=580.19 Aligned_cols=450 Identities=30% Similarity=0.451 Sum_probs=341.3
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCC-CCCCccccchhccccCC---CCCCccccccCcCCCcee
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPF-GNPLVTDKRFFGFSLLQ---TDEYTSVAQSFISTDGVQ 123 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 123 (523)
+..+|||||||||++|+++|.+|+| |.+|||||+|+... .......+..+...+.. ...|.+.++.+...+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 3467999999999999999999999 69999999997432 22222222221111111 123455666666666788
Q ss_pred ecCceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC---------------C-CCCChhH
Q 009873 124 NHRGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF---------------P-PELTPWQ 180 (523)
Q Consensus 124 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~---------------~-p~~~~~~ 180 (523)
+.+|++|||+|.+|+|++.|+.+.+++. .+|+++++++||+++|+...- . ....+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 8999999999999999999998766643 379999999999999986521 0 1234556
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCcee
Q 009873 181 SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRA 258 (523)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v 258 (523)
+.+.++++++|++...........+...... .+..|.|.++.. +++ +.++.|++|++++.|++|+++++ ++
T Consensus 162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~------~a 234 (560)
T PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK------RA 234 (560)
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC------eE
Confidence 7788888999986433222111222221111 245788887765 455 55678999999999999999854 99
Q ss_pred eEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCc
Q 009873 259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCI 338 (523)
Q Consensus 259 ~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~ 338 (523)
+||++.+.+++ ...+. +|.||||||+++||+|||+||||++++|+++||+++.++|+||+||+||+..
T Consensus 235 ~GV~~~~~~~~---~~~~~---------ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~ 302 (560)
T PRK02106 235 VGVEYERGGGR---ETARA---------RREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV 302 (560)
T ss_pred EEEEEEeCCcE---EEEEe---------eeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc
Confidence 99999885443 33334 5999999999999999999999999999999999999999999999999988
Q ss_pred eEEEecCCCCCC-C---CCc--------------------ceeeee----------------ecCC---CCC-----Ccc
Q 009873 339 AKLVDTMPQKRL-P---EPP--------------------EVVAGV----------------LPIS---SNA-----SRM 370 (523)
Q Consensus 339 ~~~~~~~~~~~~-~---~~~--------------------~~~g~~----------------~~~~---~~~-----~~~ 370 (523)
.+.+........ . .+. ...+.| ++.. .+. ..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 382 (560)
T PRK02106 303 YIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGF 382 (560)
T ss_pred eEEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccccceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeE
Confidence 766543221000 0 000 000001 1100 000 012
Q ss_pred cEEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHH
Q 009873 371 PIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRK 449 (523)
Q Consensus 371 ~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 449 (523)
.+...+..|.++|+|+|+++|+++.|.|+++|+.++.|++.+.++++.++++++.+++..+...+..|. ...+++++++
T Consensus 383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 462 (560)
T PRK02106 383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDA 462 (560)
T ss_pred EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccCCCcccCCHHHHHH
Confidence 234456799999999999999999999999999999999999999999999999988877654444443 2367888999
Q ss_pred HHHcccccccccccceecc----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 009873 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER 518 (523)
Q Consensus 450 ~~~~~~~~~~H~~Gt~~MG----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~ 518 (523)
|++....+.+|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||+|+|+|+.|+++.
T Consensus 463 ~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 463 FVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred HHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 9999988999999999999 79999999999999999999999999999999999999999999998864
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=6.3e-69 Score=570.30 Aligned_cols=444 Identities=30% Similarity=0.438 Sum_probs=338.8
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCC-CCCccccchhccccCC---CCCCccccccCcCCCceeecCce
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFG-NPLVTDKRFFGFSLLQ---TDEYTSVAQSFISTDGVQNHRGR 128 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ 128 (523)
||||||||++|+++|.+|+| + .||||||+|+.... +.....+..+...+.. ...|.+.++....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 6 79999999974321 2222222221111111 12455667777777788899999
Q ss_pred ecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC---------------CCCCChhHHHHHHH
Q 009873 129 VLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF---------------PPELTPWQSVVEFG 186 (523)
Q Consensus 129 ~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~---------------~p~~~~~~~~~~~~ 186 (523)
+|||+|.+|++++.|+++.+++. .+|.|+++.+||+++|+.... .+...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999998766542 379999999999999987541 11234567778888
Q ss_pred HHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEE
Q 009873 187 LLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFI 264 (523)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~ 264 (523)
++++|++...........++..... .+..|.|+++.. +++ +.++.|++|+++++|++|+++++ +++||++.
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~------ra~GV~~~ 233 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDS-TVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN------RATGVEFK 233 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEE-EcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC------eEEEEEEE
Confidence 8999986433322111222222112 245788888765 455 45588999999999999999855 99999998
Q ss_pred ecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEEEec
Q 009873 265 KSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDT 344 (523)
Q Consensus 265 ~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~ 344 (523)
+. ++ ..++.+ +|.||||||+++||+||++||||++++|+++||+++.++|+||+||+||+...+.+..
T Consensus 234 ~~-~~---~~~~~~--------ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~ 301 (532)
T TIGR01810 234 KG-GR---KEHTEA--------NKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHAC 301 (532)
T ss_pred eC-Cc---EEEEEE--------eeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEe
Confidence 73 33 344433 5999999999999999999999999999999999999999999999999988777643
Q ss_pred CCCCC-CCC--------------------Cc--c-eeeeee----------------cCC---CCC-----CcccEEeee
Q 009873 345 MPQKR-LPE--------------------PP--E-VVAGVL----------------PIS---SNA-----SRMPIAAKL 376 (523)
Q Consensus 345 ~~~~~-~~~--------------------~~--~-~~g~~~----------------~~~---~~~-----~~~~~~~~~ 376 (523)
..... ... .. . ..+.|+ +.. .+. ..+.+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 302 KQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGP 381 (532)
T ss_pred cCCcccccccchhhhhHHHHHHHhcCCCCccccccceeEEEecCCCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEee
Confidence 32100 000 00 0 000011 100 000 012234566
Q ss_pred cCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHHHHHccc
Q 009873 377 AFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRKLCKNNV 455 (523)
Q Consensus 377 ~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 455 (523)
..|.|+|+|+|+++|+.+.|.|+++|+.++.|++.+.++++.++++++..++..+...+..|. ...+++++++|++...
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~d~~~~~~ir~~~ 461 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRHG 461 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccCCCCCCCCHHHHHHHHhhhc
Confidence 799999999999999999999999999999999999999999999999988877654444442 3468899999999999
Q ss_pred ccccccccceecc------cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 009873 456 RTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517 (523)
Q Consensus 456 ~~~~H~~Gt~~MG------~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~ 517 (523)
.+.+|++|||||| +|||+++||||++||||+|+||||+.+++||++|+||+|+|+||.|+++
T Consensus 462 ~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 462 ETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred ccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 9999999999999 5999999999999999999999999999999999999999999999864
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-61 Score=509.03 Aligned_cols=449 Identities=27% Similarity=0.388 Sum_probs=349.7
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCC---CCCCccccccCcCCCceeec
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQ---TDEYTSVAQSFISTDGVQNH 125 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 125 (523)
...+|||||||||.+|+++|.+|++ +++|||||+|+....- ....+..+.....+ ...|.+.++.+...+.+.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4568999999999999999999999 8999999999743221 23334444443333 34567777777778889999
Q ss_pred CceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC--------C----C-------CCChh
Q 009873 126 RGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF--------P----P-------ELTPW 179 (523)
Q Consensus 126 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~--------~----p-------~~~~~ 179 (523)
++++|||+|++|+|++.|....+++. .+|+++++.+||+++|+.... + | ...+.
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999998876642 459999999999999975442 1 1 12356
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhh-hh-hCCCCCeEEEeccEEEEEEEcCCCCCCCce
Q 009873 180 QSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADL-LE-AGNPKNLVVLLNATVNNIIFSNNGKANESR 257 (523)
Q Consensus 180 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~ 257 (523)
...+.++..++|++....+......+.+......+ .|.|+++... +. +.+++|++|++++.|++|+++++ |
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~-~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~------r 235 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTIC-NGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD------R 235 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeecc-CCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC------e
Confidence 67777777888986554443333334333333444 7888877654 55 68899999999999999999998 9
Q ss_pred eeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcC
Q 009873 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPC 337 (523)
Q Consensus 258 v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~ 337 (523)
++||++...++.+ .....+ ++.||||||+++||+|||+||+|+.+++..+|+.++.++|.||+||+||..
T Consensus 236 ~~gv~~~~~~~~~--~~~~~a--------~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~ 305 (542)
T COG2303 236 AVGVEVEIGDGGT--IETAVA--------AREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLE 305 (542)
T ss_pred eEEEEEEeCCCCc--eEEEec--------CceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhh
Confidence 9999998754420 123333 699999999999999999999999999999999999999999999999998
Q ss_pred ceEEEecCCCCCCC---CCcce---------------------eeeeecCC----------------------CCCCccc
Q 009873 338 IAKLVDTMPQKRLP---EPPEV---------------------VAGVLPIS----------------------SNASRMP 371 (523)
Q Consensus 338 ~~~~~~~~~~~~~~---~~~~~---------------------~g~~~~~~----------------------~~~~~~~ 371 (523)
..+.+......... .+... .+ |+... .....++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~g-f~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 384 (542)
T COG2303 306 IYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGG-FVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFT 384 (542)
T ss_pred hhhheeccCccccccccccccccccceeEEeecCCCccccccccc-ccccCccccCCCcccccccccccccccccCCccE
Confidence 87765332221000 00000 01 11000 0011234
Q ss_pred EEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHHH
Q 009873 372 IAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRKL 450 (523)
Q Consensus 372 ~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 450 (523)
+.....+|.++|.|.++..|+...|.|+++|..++.|++.+..+.+..++++.+..+..+...+..|. ...+++++..|
T Consensus 385 ~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 464 (542)
T COG2303 385 LHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGPRVTTDEDISAA 464 (542)
T ss_pred EeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhcCCCccccHHHHHHH
Confidence 55666799999999999999999999999999999999999999999999999776666665565553 55677789999
Q ss_pred HHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 009873 451 CKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517 (523)
Q Consensus 451 ~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~ 517 (523)
++....+.+|++|||+|| +|+|++|||||++||||+|+|+||+++++||++|++|||+|+|++|+++
T Consensus 465 ~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 465 IRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred HHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 999999999999999999 4555999999999999999999999999999999999999999999974
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=3.5e-49 Score=409.12 Aligned_cols=420 Identities=17% Similarity=0.147 Sum_probs=275.1
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCC----Cc------cccchhc----cccCCCC-----------
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNP----LV------TDKRFFG----FSLLQTD----------- 107 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~----~~------~~~~~~~----~~~~~~~----------- 107 (523)
|||||||+|++|+++|+.|++ |++|+|||+|....... .. .....+. ..+...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999998 89999999997543210 00 0011110 0000000
Q ss_pred ---CCccccccCcC----------CCcee-ecCceecccccccCCccccCCChhhHhh--CCCC--HHHHHHHhHhhhcc
Q 009873 108 ---EYTSVAQSFIS----------TDGVQ-NHRGRVLGGSSAINGGFYSRAREDFVKK--AGWD--EELVKKAYEWVESK 169 (523)
Q Consensus 108 ---~~~~~~~~~~~----------~~~~~-~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~~w~--~~~~~~~~~~~~~~ 169 (523)
.+...+..+.. ..++. ..+.+.+||+|.+|++.++|..++.... .+|| ++++++||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 00000000000 01122 3577899999999999999987643221 3576 69999999999999
Q ss_pred ccCCCCC-------ChhHHHHHHHHHHcCC-CCCCCCCcCCCCcceeeeeEEcCCCeeechH-hhhh-h----CCCCCeE
Q 009873 170 VVFPPEL-------TPWQSVVEFGLLEAGI-LPYNGYSLEHIEGTKIGGTAFDQCGKRHTSA-DLLE-A----GNPKNLV 235 (523)
Q Consensus 170 ~~~~p~~-------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~-~----~~~~g~~ 235 (523)
+++.+.. ....+.+.+.+. |. ..... ... +.. + -|+.+.+++.. ..+. + .++.|++
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~----PlA-~~~--~-~c~~~ak~s~~~t~~~~~~~~~~~~~n~~ 230 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYK--GQRDFQPL----PLA-CHR--R-TDPTYVEWHSADTVFDLQPNDDAPSERFT 230 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhc--cccccccC----chh-hhc--c-CCCccceecCCccchhhhhhhhccCCCEE
Confidence 8776521 111112222221 22 11110 000 000 0 12335555432 2232 2 2478899
Q ss_pred EEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhh
Q 009873 236 VLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHL 314 (523)
Q Consensus 236 i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l 314 (523)
|++++.|++|++++++.. +|++|++.+. +|+ .++++| +.||||||+++||||||+|+++.....
T Consensus 231 l~~~a~v~~i~~d~~~~~---~v~~v~~~d~~~g~---~~~v~A---------~~vVLAagaIetpRLLL~S~~~~~~~p 295 (544)
T TIGR02462 231 LLTNHRCTRLVRNETNES---EIEAALVRDLLSGD---RFEIKA---------DVYVLACGAVHNPQILVNSGFGQLGRP 295 (544)
T ss_pred EEcCCEEEEEEeCCCCCc---eeEEEEEEECCCCc---EEEEEC---------CEEEEccCchhhHHHHHhCCCCCCcCC
Confidence 999999999999875411 8999999986 477 778887 999999999999999999998752211
Q ss_pred hhCCCCceec--CcccccccccCcCceEEEecCCCCCC----C----CC-c-----ceeee--------ee-c-------
Q 009873 315 KDLNIPTIVD--LQEVGEGMQDNPCIAKLVDTMPQKRL----P----EP-P-----EVVAG--------VL-P------- 362 (523)
Q Consensus 315 ~~~gi~~~~~--~p~vG~~l~dh~~~~~~~~~~~~~~~----~----~~-~-----~~~g~--------~~-~------- 362 (523)
.. +... ++.||+|||||+...+......+... . .+ . ...++ |. +
T Consensus 296 ~g----l~Nss~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 371 (544)
T TIGR02462 296 DP----TNPPPLLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTP 371 (544)
T ss_pred CC----cCCCCCCCCCCcchhcCCCccEEEEecchhhhhccCCccccccccccchhhhccccCCcccccccccCcccccc
Confidence 11 1122 37899999999987665433211000 0 00 0 00000 10 0
Q ss_pred ---C-CCCCC----c---------------cc-EEeeecCcCcceEEEecC--CCCCCCCeeecCCCCChhhHHHHHHHH
Q 009873 363 ---I-SSNAS----R---------------MP-IAAKLAFPISKGKLELDS--TDPRQNPSIKFNYLAKEKDLHECVKMV 416 (523)
Q Consensus 363 ---~-~~~~~----~---------------~~-~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~ 416 (523)
. .|+.. . .. .+.....|..+|+|+|++ +|.+|.|+++++|..+++|.+.+..+.
T Consensus 372 ~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~ 451 (544)
T TIGR02462 372 FTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMM 451 (544)
T ss_pred cccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHH
Confidence 0 00000 0 00 123445799999999976 599999999999999999999999999
Q ss_pred HHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEEeecccc
Q 009873 417 QLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTF 491 (523)
Q Consensus 417 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~ 491 (523)
+.+.++++.++..... .. + .+ ...+.+.|++|||||| +|||++|||||++||||+|+|+|
T Consensus 452 ~~~~~i~~~~G~~~~~--~~-~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~ 516 (544)
T TIGR02462 452 TDMCNVAAKIGGYLPG--SL-P----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNI 516 (544)
T ss_pred HHHHHHHHHcCCCccc--cc-c----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcC
Confidence 9999999988753211 00 0 00 1124578999999999 89999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHH
Q 009873 492 QESPGTNPMATVMMLGRYQGVKLVEE 517 (523)
Q Consensus 492 P~~~~~nPtlTi~Ala~r~a~~i~~~ 517 (523)
|+++++|||+|+||+|+|+|++|+++
T Consensus 517 Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 517 PTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=2.4e-41 Score=334.16 Aligned_cols=267 Identities=36% Similarity=0.521 Sum_probs=185.2
Q ss_pred ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCCCCCccccchhcccc-CCCCCCccccccCcCCCceeecCceec
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFGNPLVTDKRFFGFSL-LQTDEYTSVAQSFISTDGVQNHRGRVL 130 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l 130 (523)
|||||||||++|+++|.+|++ + .+|||||+|+.............+.... .....+.+.++.....+.+.+.+|++|
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 80 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKGL 80 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-ST
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccccccceeeeecceec
Confidence 899999999999999999999 5 7999999998654433100000010000 011123344555666677778899999
Q ss_pred ccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccc-------------cC---CCCCChhHHHHHHHH
Q 009873 131 GGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKV-------------VF---PPELTPWQSVVEFGL 187 (523)
Q Consensus 131 GG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~-------------~~---~p~~~~~~~~~~~~~ 187 (523)
||+|.+|++++.|+++.++++ .+|+++++.++|+++|... .. .+...+..+.+.+++
T Consensus 81 GGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~ 160 (296)
T PF00732_consen 81 GGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDAA 160 (296)
T ss_dssp TGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHHH
T ss_pred CCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHHH
Confidence 999999999999998866553 3588999999999999332 22 224456678888999
Q ss_pred HHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe
Q 009873 188 LEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK 265 (523)
Q Consensus 188 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~ 265 (523)
.+.|++...........+.+...+ .|+.|.|+++.. +|+ +.+++|++|+++|+|++|++++++. +++||++.+
T Consensus 161 ~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~----~a~gV~~~~ 235 (296)
T PF00732_consen 161 EELGIPVPQDFNGCDPCGFCMTGF-NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGG----RATGVEYVD 235 (296)
T ss_dssp HHTTHHBCSCTTSSTCSEEEECEE-CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTST----EEEEEEEEE
T ss_pred HHcCCccccccccccccccccccc-cccchhceehhhcccchhhccCCccEEcCcEEEEEeeecccc----ceeeeeeee
Confidence 999986222222233333333222 477898887654 465 6677799999999999999974443 999999998
Q ss_pred cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCc
Q 009873 266 SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP 336 (523)
Q Consensus 266 ~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~ 336 (523)
.++. ...+.+. +|.||||||+++||+|||+||||+.++|+++||+++.++| ||+|||||+
T Consensus 236 ~~~~-~~~~~~~---------ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 236 NDGG-VQRRIVA---------AKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp TTTS-EEEEEEE---------EEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred cCCc-ceeeecc---------ceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 6543 0023344 5999999999999999999999999999999999999999 999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=1.1e-31 Score=235.65 Aligned_cols=131 Identities=35% Similarity=0.554 Sum_probs=109.1
Q ss_pred cCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccC-----CC--CC-CCCCCCHHHHHHH
Q 009873 379 PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG-----IK--PQ-EKLMSNSDELRKL 450 (523)
Q Consensus 379 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~-----~~--~~-~~~~~~~~~~~~~ 450 (523)
|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++... ++.+.. .. .. .....+++++++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999998 544421 11 11 1245677899999
Q ss_pred HHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHH
Q 009873 451 CKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQ 510 (523)
Q Consensus 451 ~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~ 510 (523)
++....+.+|++|||+|| +|||++|||||++||||+|+|+||+++++||++|+||+|+|+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 999999999999999999 999999999999999999999999999999999999999995
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.73 E-value=6.8e-17 Score=170.57 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=110.7
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeec
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNH 125 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (523)
+..++.++||||||+|.+|+++|+++++ |++|+||||.+
T Consensus 55 ~~~~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~---------------------------------------- 94 (506)
T PRK06481 55 PSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP---------------------------------------- 94 (506)
T ss_pred CccccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC----------------------------------------
Confidence 3456679999999999999999999999 99999999997
Q ss_pred CceecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCC--CCC----ChhHHHHHHHHHHcCCCCCCCCC
Q 009873 126 RGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP--PEL----TPWQSVVEFGLLEAGILPYNGYS 199 (523)
Q Consensus 126 ~g~~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--p~~----~~~~~~~~~~~~~~g~~~~~~~~ 199 (523)
.+||+|....+.+......++...+.. +..+++++...+..... +++ ........+++.+.|++ +....
T Consensus 95 ---~~GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~-~~~~~ 169 (506)
T PRK06481 95 ---VAGGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIK-LDNLT 169 (506)
T ss_pred ---CCCCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCce-Eeecc
Confidence 446666555554443333333322221 11122333222111110 100 00122345677777763 11100
Q ss_pred cCCCCcceeeeeEEcCCCeee--chHh-hhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEE
Q 009873 200 LEHIEGTKIGGTAFDQCGKRH--TSAD-LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEA 276 (523)
Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~~--~~~~-~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i 276 (523)
.. .+...........+... .... +...+++.|++|++++.|++|+.+++ +|+||++...+++ ..++
T Consensus 170 ~~--~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g------~V~Gv~~~~~~g~---~~~i 238 (506)
T PRK06481 170 IT--GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG------KVTGVKVKINGKE---TKTI 238 (506)
T ss_pred cC--CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC------EEEEEEEEeCCCe---EEEE
Confidence 00 00000000111111110 1111 23355678999999999999987655 8999998765555 5667
Q ss_pred EecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 277 YLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 277 ~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
.+ +.||||+|++..+.-++
T Consensus 239 ~a---------~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 239 SS---------KAVVVTTGGFGANKDMI 257 (506)
T ss_pred ec---------CeEEEeCCCcccCHHHH
Confidence 76 99999999998654433
No 10
>PRK07121 hypothetical protein; Validated
Probab=99.66 E-value=8.4e-16 Score=162.26 Aligned_cols=208 Identities=18% Similarity=0.210 Sum_probs=117.9
Q ss_pred CCCcccccccccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCcccccc
Q 009873 37 EVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQS 115 (523)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (523)
+.|++........++.++||||||+|.+|+++|++|++ |++|+||||..
T Consensus 4 ~~~~~~~~~~~~~~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~------------------------------ 53 (492)
T PRK07121 4 DIPRPVSAEDVTSWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAA------------------------------ 53 (492)
T ss_pred CCCccCCCccccccCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC------------------------------
Confidence 44444433444455789999999999999999999999 99999999987
Q ss_pred CcCCCceeecCceecccccccCCccccCC-ChhhHhhCCC--CHHHHHHHhHhhhccccCCCCC----ChhHHHHHHHHH
Q 009873 116 FISTDGVQNHRGRVLGGSSAINGGFYSRA-REDFVKKAGW--DEELVKKAYEWVESKVVFPPEL----TPWQSVVEFGLL 188 (523)
Q Consensus 116 ~~~~~~~~~~~g~~lGG~s~~~~~~~~r~-~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~ 188 (523)
.+||+|.+.++.++.. ....+...+. +.+.+.+++.+..... ..+++ ........+++.
T Consensus 54 -------------~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~~-~d~~l~~~~~~~s~~~i~wl~ 119 (492)
T PRK07121 54 -------------GAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGPG-VDEEKLRRYCEGSVEHFDWLE 119 (492)
T ss_pred -------------CCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHccHHHHHHHH
Confidence 4577777776655432 2233322232 2233333332221110 00110 011233456677
Q ss_pred HcCCCCCCCC----C-cC------CCCcc----ee--------eeeEEcCCCe---eechHhhh-hhCCCCCeEEEeccE
Q 009873 189 EAGILPYNGY----S-LE------HIEGT----KI--------GGTAFDQCGK---RHTSADLL-EAGNPKNLVVLLNAT 241 (523)
Q Consensus 189 ~~g~~~~~~~----~-~~------~~~~~----~~--------~~~~~~~~g~---~~~~~~~l-~~~~~~g~~i~~~~~ 241 (523)
+.|++..... . ++ ...+. .. ........+. .......| ..+++.|++|+++++
T Consensus 120 ~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~ 199 (492)
T PRK07121 120 GLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTR 199 (492)
T ss_pred HcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCE
Confidence 7775311100 0 00 00000 00 0000000010 00111123 356778999999999
Q ss_pred EEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 242 VNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 242 V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
|++|+.++++ +|+||++.+ +++ .+.+.+ ++.||||+|++....-|++
T Consensus 200 v~~l~~~~~g-----~v~Gv~~~~-~~~---~~~i~a--------~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 200 ATRLIVDDDG-----RVVGVEARR-YGE---TVAIRA--------RKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred EEEEEECCCC-----CEEEEEEEe-CCc---EEEEEe--------CCEEEECCCCcCcCHHHHH
Confidence 9999987644 899999865 455 566765 5999999999987555554
No 11
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.65 E-value=2.2e-15 Score=160.19 Aligned_cols=77 Identities=31% Similarity=0.456 Sum_probs=60.6
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeec
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNH 125 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (523)
...++++|||||||+| +|+++|..+++ |++|+||||.+
T Consensus 10 ~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~---------------------------------------- 48 (564)
T PRK12845 10 TPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS---------------------------------------- 48 (564)
T ss_pred CCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC----------------------------------------
Confidence 3466789999999999 89999999999 99999999986
Q ss_pred CceecccccccCCccccCCChhhHhhCCC--CHHHHHHHhHhhh
Q 009873 126 RGRVLGGSSAINGGFYSRAREDFVKKAGW--DEELVKKAYEWVE 167 (523)
Q Consensus 126 ~g~~lGG~s~~~~~~~~r~~~~~~~~~~w--~~~~~~~~~~~~~ 167 (523)
.+||++.++++.++.+....+...+. +.+++.+|+.+..
T Consensus 49 ---~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~ 89 (564)
T PRK12845 49 ---YVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVV 89 (564)
T ss_pred ---CCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHh
Confidence 67999999988888777666655543 3355555555443
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.63 E-value=3.4e-15 Score=159.69 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=49.3
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
.+++.|++|++++.|++|+.++++ +|+||++.. +|+ .+++.+ ++.||||||+|+...-|++
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g-----~V~Gv~~~~-~~~---~~~i~a--------~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDG-----AVVGAVVER-EGR---TLRIGA--------RRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCC-----cEEEEEEEe-CCc---EEEEEe--------ceeEEEecCcccCCHHHHH
Confidence 567789999999999999998654 899999865 676 677876 4589999999996554443
No 13
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.62 E-value=9.2e-15 Score=154.69 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=46.8
Q ss_pred CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
.++.|++|+++++|++|+.+++ +|+||++.. +|+ .+++++ +|.||||||+++...-|+
T Consensus 184 ~~~~gv~i~~~t~~~~Li~~~g------~v~Gv~~~~-~g~---~~~i~A--------~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 184 ARFPNARLRLNTPLVELVVEDG------RVVGAVVER-GGE---RRRVRA--------RRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HhCCCCEEEeCCEEEEEEecCC------EEEEEEEEE-CCc---EEEEEe--------CceEEEeCCCccCCHHHH
Confidence 4456999999999999998755 999999865 566 677887 568999999997654444
No 14
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.59 E-value=1.5e-14 Score=154.18 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=49.7
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..+++.|++|+++++|++|+.+++ +|+||++.. +|+ .+++.+ ++.||||+|+++...-|+.
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~~g------~v~Gv~~~~-~g~---~~~i~A--------~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVEDG------RVVGVVVVR-DGR---EVLIRA--------RRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCC------EEEEEEEEE-CCe---EEEEEe--------cceEEEecCCccCCHHHHH
Confidence 356778999999999999999865 999999875 566 667776 5689999999997655543
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.57 E-value=1.4e-14 Score=150.23 Aligned_cols=185 Identities=24% Similarity=0.309 Sum_probs=102.1
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceecccc
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGS 133 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 133 (523)
||||||+|.+|++||++|++ |.||+||||++ .+||+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~-------------------------------------------~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP-------------------------------------------RLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSS-------------------------------------------GGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeec-------------------------------------------ccccc
Confidence 89999999999999999999 99999999997 56777
Q ss_pred cccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCC--CC----CChhHHHHHHHHHHcCCCCCCCCCcCCCCcce
Q 009873 134 SAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP--PE----LTPWQSVVEFGLLEAGILPYNGYSLEHIEGTK 207 (523)
Q Consensus 134 s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 207 (523)
+....+.+.......+...+-. +..+.+++...+..... ++ +........+++.+.|++ +............
T Consensus 38 ~~~s~g~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~g~~~~~~ 115 (417)
T PF00890_consen 38 SAFSSGGFDAAGTPPQREAGIE-DSPEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEELGVP-FRRDEDGPFAPTP 115 (417)
T ss_dssp GGGTCSEEEESSSHSSHHTTTT-CHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHTT---B-BGTTSSBCEEE
T ss_pred cccccCceeeeccccccccccc-ccccccceeeecccccccccchhhhhhhcccceehhhhhhccc-ccccccccccccc
Confidence 7776666555443222212110 11222222222221111 10 111233456677777763 2210000000000
Q ss_pred e-----e-eeEE-cCCC------eeechHhhh-hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCc
Q 009873 208 I-----G-GTAF-DQCG------KRHTSADLL-EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNH 272 (523)
Q Consensus 208 ~-----~-~~~~-~~~g------~~~~~~~~l-~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~ 272 (523)
. . .... .... ........+ ..+++.+++|+++++|++|+.+++ +|+||++.+ .+|+
T Consensus 116 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g------~V~Gv~~~~~~~g~--- 186 (417)
T PF00890_consen 116 FGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG------RVTGVVAENPADGE--- 186 (417)
T ss_dssp ETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT------EEEEEEEEETTTCE---
T ss_pred cCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC------ceeEEEEEECCCCe---
Confidence 0 0 0111 1111 001111123 356677899999999999999877 999999984 3566
Q ss_pred eeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873 273 MHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303 (523)
Q Consensus 273 ~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL 303 (523)
.+++++ +.||||+|++.. .++
T Consensus 187 ~~~i~A---------~aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 187 FVRIKA---------KAVILATGGFGG-ELL 207 (417)
T ss_dssp EEEEEE---------SEEEE----BGG-HHH
T ss_pred EEEEee---------eEEEeccCcccc-ccc
Confidence 788888 799999999998 443
No 16
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.55 E-value=4.6e-14 Score=148.31 Aligned_cols=194 Identities=19% Similarity=0.132 Sum_probs=109.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCcee
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRV 129 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 129 (523)
..++||||||+|++|+++|++|++ |.+|+||||++.. .
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~-----------------------------------------~ 40 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPRE-----------------------------------------W 40 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc-----------------------------------------C
Confidence 357999999999999999999999 9999999998621 2
Q ss_pred cccccccCCccccCCChhhH-hhCCCCHHHHHHHhHhhhccccCC--CCC----ChhHHHHHHHHHHcCCCCCCCCCcCC
Q 009873 130 LGGSSAINGGFYSRAREDFV-KKAGWDEELVKKAYEWVESKVVFP--PEL----TPWQSVVEFGLLEAGILPYNGYSLEH 202 (523)
Q Consensus 130 lGG~s~~~~~~~~r~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~--p~~----~~~~~~~~~~~~~~g~~~~~~~~~~~ 202 (523)
.||+|.+.+++......... ....++.++ +++++.+..... +++ ..-.....+++.+.|++-..... .
T Consensus 41 ~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~--~ 115 (466)
T PRK08274 41 RGGNSRHTRNLRCMHDAPQDVLVGAYPEEE---FWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLS--G 115 (466)
T ss_pred CCcccccCCceeeeCCCchhhccccccHHH---HHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCC--C
Confidence 45666555552221111000 001112222 222222211111 100 00112345667777763111000 0
Q ss_pred CCcceeeeeEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCC
Q 009873 203 IEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPG 282 (523)
Q Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~ 282 (523)
..........+...| ......+...+++.|++|+++++|++|+.+++ +|+||++.+.+++ ...+.+
T Consensus 116 ~~~~~~~~~~~~g~g-~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g------~v~gv~~~~~~g~---~~~i~a---- 181 (466)
T PRK08274 116 ALHVARTNAFFWGGG-KALVNALYRSAERLGVEIRYDAPVTALELDDG------RFVGARAGSAAGG---AERIRA---- 181 (466)
T ss_pred ccccCCCCeeecCCH-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC------eEEEEEEEccCCc---eEEEEC----
Confidence 000000000111111 11111123356678999999999999998765 8999998654566 566776
Q ss_pred CCCCCCcEEEecCCchhHHHHHhhCCC
Q 009873 283 NSSTWGDVILSAGALGSPQLLLLSGIG 309 (523)
Q Consensus 283 ~~~~~~~VILaaGa~~tp~lLl~SGig 309 (523)
+.||||+|++.+++.+++.-.+
T Consensus 182 -----~~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 182 -----KAVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred -----CEEEECCCCCCCCHHHHHhhcC
Confidence 9999999999998877776444
No 17
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.53 E-value=1.5e-13 Score=146.79 Aligned_cols=35 Identities=40% Similarity=0.526 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||||||+|.+|+++|+.+++ |++|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368999999999999999999999 89999999996
No 18
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.52 E-value=7.6e-14 Score=144.46 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=41.9
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
++.|++|++++.|++|+.+++ +|.||.+.+ +++ .+.+.+ +.||||+|+++.
T Consensus 140 ~~~gV~i~~~t~v~~Li~~~~------~v~Gv~~~~-~g~---~~~i~A---------k~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIENDN------TCIGAICLK-DNK---QINIYS---------KVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEecCC------EEEEEEEEE-CCc---EEEEEc---------CeEEEccCcccc
Confidence 457999999999999998765 899988765 455 556776 999999999864
No 19
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.50 E-value=1.9e-13 Score=142.54 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=48.1
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..+++.|++|++++.|++|+.++++ +++||++.+.+++ .+.+.+ +.||||+|++....-|++
T Consensus 138 ~~~~~~gv~i~~~~~v~~l~~~~~g-----~v~Gv~~~~~~g~---~~~~~a---------~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 138 KKAKKEGIDTRLNSKVEDLIQDDQG-----TVVGVVVKGKGKG---IYIKAA---------KAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHcCCEEEeCCEeeEeEECCCC-----cEEEEEEEeCCCe---EEEEec---------ceEEEecCCCCCCHHHHH
Confidence 3566789999999999999997654 8999998875554 445565 999999999987544443
No 20
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.50 E-value=1.8e-13 Score=146.29 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=44.2
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~ 298 (523)
.+.+.|+++++++.+++|+.+++ +|+||.+.+.+ |+ .+.+.+ |.||||+|+++
T Consensus 145 ~~~~~gv~i~~~~~~~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~ 198 (566)
T PRK06452 145 RTSGLNVDFYNEWFSLDLVTDNK------KVVGIVAMQMKTLT---PFFFKT---------KAVVLATGGMG 198 (566)
T ss_pred HHHhCCCEEEeCcEEEEEEEECC------EEEEEEEEECCCCe---EEEEEe---------CeEEECCCccc
Confidence 44557999999999999999765 99999998743 45 566776 99999999997
No 21
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.50 E-value=4.9e-13 Score=142.76 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=49.6
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS 306 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S 306 (523)
.+++.|++|+++++|++|+.+++ +|+||++.. +++ .+++.+ ++.||||+|++.+..-|+..
T Consensus 217 ~~~~~gv~v~~~t~v~~l~~~~g------~v~Gv~~~~-~g~---~~~i~A--------~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 217 GLQRAGVPVLLNTPLTDLYVEDG------RVTGVHAAE-SGE---PQLIRA--------RRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHcCCCEEEeCCEEEEEEEeCC------EEEEEEEEe-CCc---EEEEEe--------ceeEEEccCCcCcCHHHHHH
Confidence 55678999999999999998765 999999865 566 677876 45799999999987666554
No 22
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.50 E-value=3.2e-13 Score=155.05 Aligned_cols=198 Identities=20% Similarity=0.193 Sum_probs=110.5
Q ss_pred ccccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCcee
Q 009873 45 DVKEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQ 123 (523)
Q Consensus 45 ~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (523)
...+....++||||||+|.+|++||+++++ |++|+||||++
T Consensus 401 ~~~i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~-------------------------------------- 442 (1167)
T PTZ00306 401 KKRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEA-------------------------------------- 442 (1167)
T ss_pred ccccccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccC--------------------------------------
Confidence 344556788999999999999999999999 99999999987
Q ss_pred ecCceecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccc-c--CCCC----CChhHHHHHHHHHHcCCCCCC
Q 009873 124 NHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKV-V--FPPE----LTPWQSVVEFGLLEAGILPYN 196 (523)
Q Consensus 124 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~-~--~~p~----~~~~~~~~~~~~~~~g~~~~~ 196 (523)
.+||+|.++++.++......+...+.. +..+.+++...... . ..++ +..-.....+++.+.|++ +.
T Consensus 443 -----~~GG~s~~s~ggi~~~~t~~q~~~gi~-D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~-f~ 515 (1167)
T PTZ00306 443 -----KLGGNSAKATSGINGWGTRAQAKQDVL-DGGKFFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVP-LT 515 (1167)
T ss_pred -----CCCCchhhcccccccCCchhhhhhccc-ccHHHHHHHHHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCC-ce
Confidence 457777665554444333333222211 11111111111100 0 0111 011123445677777763 21
Q ss_pred CCCcCCCCcceeeeeEEc---CCCee----echHhhhh-h---CCCCCeEEEeccEEEEEEEcCCC---CCCCceeeEEE
Q 009873 197 GYSLEHIEGTKIGGTAFD---QCGKR----HTSADLLE-A---GNPKNLVVLLNATVNNIIFSNNG---KANESRAHGIR 262 (523)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~---~~g~~----~~~~~~l~-~---~~~~g~~i~~~~~V~~l~~~~~g---~~~~~~v~GV~ 262 (523)
..... .+......... .++.. ......+. . ..+.|++|++++.|++|+.++++ ++...+|+||+
T Consensus 516 ~~~~~--gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~ 593 (1167)
T PTZ00306 516 VLSQL--GGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVR 593 (1167)
T ss_pred eeecc--CCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEE
Confidence 11000 01100001110 01110 01111222 2 23469999999999999997521 00001899999
Q ss_pred EEec---CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHH
Q 009873 263 FIKS---DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ 301 (523)
Q Consensus 263 ~~~~---~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~ 301 (523)
+.+. +|+ .+.+.+ |.||||+|+|+...
T Consensus 594 ~~~~~~~~g~---~~~i~A---------kaVILATGGf~~N~ 623 (1167)
T PTZ00306 594 YKQASDASGQ---VMDLLA---------DAVILATGGFSNDH 623 (1167)
T ss_pred EEecccCCCc---EEEEEe---------ceEEEecCCcccCc
Confidence 9875 676 677876 99999999999754
No 23
>PRK12839 hypothetical protein; Provisional
Probab=99.49 E-value=1.9e-13 Score=145.85 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=47.2
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
..+++.|++|++++.|++|+.++++ +|+||++.+.+|+ .++.+ ++.||||||++....-|+
T Consensus 222 ~~a~~~Gv~i~~~t~v~~Li~~~~g-----~V~GV~~~~~~g~----~~i~a--------ak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 222 RSADDLGVDLRVSTSATSLTTDKNG-----RVTGVRVQGPDGA----VTVEA--------TRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHCCCEEEcCCEEEEEEECCCC-----cEEEEEEEeCCCc----EEEEe--------CCEEEEcCCCcccCHHHH
Confidence 3566789999999999999987544 8999998775554 34444 599999999998754443
No 24
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.48 E-value=2.6e-13 Score=146.59 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=45.4
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+++.|++|++++.|++|+.+++ +|+||.+.+. +|+ .+.+.+ |.||||||+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g------~V~GV~~~~~~~g~---~~~i~A---------kaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG------RARGIVARNLVTGE---IERHTA---------DAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC------EEEEEEEEECCCCc---EEEEEC---------CEEEECCCCccc
Confidence 45678999999999999998765 9999999874 465 566776 999999999986
No 25
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=3.2e-13 Score=144.69 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=45.8
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+ .+.+.+ |.||||||+++.
T Consensus 151 ~~~~~~gi~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~ 207 (588)
T PRK08958 151 QQNLKNHTTIFSEWYALDLVKNQDG-----AVVGCTAICIETGE---VVYFKA---------RATVLATGGAGR 207 (588)
T ss_pred HHhhhcCCEEEeCcEEEEEEECCCC-----EEEEEEEEEcCCCc---EEEEEc---------CeEEECCCCccc
Confidence 3556789999999999999986443 999999865 3566 677876 999999999975
No 26
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.47 E-value=2.4e-13 Score=146.34 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=45.7
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhH
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp 300 (523)
.+.+.|++|++++.+++|+.++++ +|.||.+.+. +|+ .+.+.+ |.||||+|+++..
T Consensus 196 ~a~~~gv~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~g~~ 252 (635)
T PLN00128 196 QAMKHNTQFFVEYFALDLIMDSDG-----ACQGVIALNMEDGT---LHRFRA---------HSTILATGGYGRA 252 (635)
T ss_pred HHHhCCCEEEEeeEEEEEEEcCCC-----EEEEEEEEEcCCCe---EEEEEc---------CeEEECCCCCccc
Confidence 455679999999999999987443 9999998763 566 677776 9999999999753
No 27
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.47 E-value=5.7e-13 Score=142.89 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..+++.|++|++++.|++|+.+++ +|+||++.+ +|+ .+++.+ ++.||||+|+++...-|++
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~~g------~V~GV~~~~-~g~---~~~i~A--------~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETDHG------RVIGATVVQ-GGV---RRRIRA--------RGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCC------EEEEEEEec-CCe---EEEEEc--------cceEEECCCCcccCHHHHH
Confidence 356678999999999999998755 999998875 565 566765 5899999999997655544
No 28
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.47 E-value=2.2e-13 Score=144.74 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=34.0
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~ 85 (523)
..+.++||||||+|.+|++||+++++|.+|+||||++
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~ 41 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDT 41 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhcCCCEEEEEccC
Confidence 3567899999999999999999998799999999997
No 29
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.46 E-value=3.8e-13 Score=144.83 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=44.9
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+.+.|++|++++.|++|+.++++ +|.||.+.+ .+|+ .+.+.+ |.||||+|+++.
T Consensus 175 ~a~~~gv~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~ 230 (617)
T PTZ00139 175 QSLKYDCNFFIEYFALDLIMDEDG-----ECRGVIAMSMEDGS---IHRFRA---------HYTVIATGGYGR 230 (617)
T ss_pred HHHhCCCEEEeceEEEEEEECCCC-----EEEEEEEEECCCCe---EEEEEC---------CcEEEeCCCCcc
Confidence 556789999999999999984333 999999865 3566 667776 999999999975
No 30
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=4.2e-13 Score=144.28 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=46.0
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+ .+.+.+ +.||||+|+++.
T Consensus 157 ~~~~~~gi~i~~~~~v~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~ 213 (598)
T PRK09078 157 QQSLKHNAEFFIEYFALDLIMDDGG-----VCRGVVAWNLDDGT---LHRFRA---------HMVVLATGGYGR 213 (598)
T ss_pred HHHhhcCCEEEEeEEEEEEEEcCCC-----EEEEEEEEECCCCc---EEEEEc---------CEEEECCCCCcc
Confidence 3456789999999999999997643 899999865 3566 677776 999999999985
No 31
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=6.4e-13 Score=141.81 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=45.8
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+++.|++|++++.|++|+.++++ +|+||.+.+ .+|+ .+.+.+ |.||||+|+++.
T Consensus 143 ~~~~~gv~i~~~t~v~~Li~~~~~-----~v~Gv~~~~~~~g~---~~~i~A---------kaVIlATGG~~~ 198 (543)
T PRK06263 143 YLIKERIKILEEVMAIKLIVDENR-----EVIGAIFLDLRNGE---IFPIYA---------KATILATGGAGQ 198 (543)
T ss_pred HHhcCCCEEEeCeEeeeeEEeCCc-----EEEEEEEEECCCCc---EEEEEc---------CcEEECCCCCCC
Confidence 456689999999999999987653 699998876 5676 667776 999999999874
No 32
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=139.80 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=47.1
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
.+++.|++|++++.|++|+.+++ +|+||++.+.+ . ...+.+ ++.||||+|++....-++.
T Consensus 223 ~~~~~Gv~i~~~~~v~~l~~~~g------~V~GV~~~~~~-~---~~~i~a--------~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 223 SALDLGIPILTGTPARELLTEGG------RVVGARVIDAG-G---ERRITA--------RRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHhCCCEEEeCCEEEEEEeeCC------EEEEEEEEcCC-c---eEEEEe--------CCEEEEcCCCccchHHHHH
Confidence 56678999999999999998865 99999987633 3 345665 4689999999986655544
No 33
>PLN02815 L-aspartate oxidase
Probab=99.45 E-value=5.5e-13 Score=142.35 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
+..|++|++++.+++|+.+++++ ..+|+||.+.+. +|+ .+.+.+ |.||||||+++.
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~--~~~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGG--SIVCHGADVLDTRTGE---VVRFIS---------KVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCC--ccEEEEEEEEEcCCCe---EEEEEe---------ceEEEcCCccee
Confidence 45699999999999999875431 014999998753 466 677776 999999999974
No 34
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.45 E-value=1.7e-12 Score=139.43 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=47.3
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
.+++.|++|++++.|++|+.+++ +|+||.+.+ ++. .+++.+ ++.||||+|++....-++
T Consensus 226 ~a~~~Gv~i~~~t~v~~l~~~~g------~v~GV~~~~-~~~---~~~i~a--------~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 226 SAEDLGVRIWESAPARELLREDG------RVAGAVVET-PGG---LQEIRA--------RKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHhCCCEEEcCCEEEEEEEeCC------EEEEEEEEE-CCc---EEEEEe--------CCEEEEcCCCcccCHHHH
Confidence 56778999999999999998755 999999876 344 455665 589999999998765554
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=127.89 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=103.6
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceec
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVL 130 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 130 (523)
+.+||||||+|++|+++|..+++ |.+|+|||+++..... -.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrK-------------------------------------il~ 44 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRK-------------------------------------ILM 44 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccce-------------------------------------eEe
Confidence 46899999999999999999999 9999999999733210 023
Q ss_pred ccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeee
Q 009873 131 GGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGG 210 (523)
Q Consensus 131 GG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 210 (523)
-|++.+|...... ...+....+=....+...+.+.. .+.++++++..|+.-+-. .. +
T Consensus 45 sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft------------~~d~i~~~e~~Gi~~~e~-----~~-----G 101 (408)
T COG2081 45 SGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT------------PEDFIDWVEGLGIALKEE-----DL-----G 101 (408)
T ss_pred cCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCC------------HHHHHHHHHhcCCeeEEc-----cC-----c
Confidence 3444444443222 22222211111122222222221 256788888888742111 11 1
Q ss_pred eEEcCCCeeechHhh-hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCc
Q 009873 211 TAFDQCGKRHTSADL-LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGD 289 (523)
Q Consensus 211 ~~~~~~g~~~~~~~~-l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~ 289 (523)
..++...+..+..++ +..+++.|++|+++++|.+|..++. +..+...+|+ ++++ +.
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~---------~f~l~t~~g~-----~i~~---------d~ 158 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS---------GFRLDTSSGE-----TVKC---------DS 158 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc---------eEEEEcCCCC-----EEEc---------cE
Confidence 233332333333343 4578899999999999999998774 2334444564 4787 99
Q ss_pred EEEecCCchhHHH
Q 009873 290 VILSAGALGSPQL 302 (523)
Q Consensus 290 VILaaGa~~tp~l 302 (523)
+|||+|+..-|++
T Consensus 159 lilAtGG~S~P~l 171 (408)
T COG2081 159 LILATGGKSWPKL 171 (408)
T ss_pred EEEecCCcCCCCC
Confidence 9999999888864
No 36
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.43 E-value=9.4e-13 Score=140.13 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=34.8
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++.++||||||+|.+|++||+++++ |.+|+||||+.
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 46778999999999999999999999 89999999997
No 37
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.43 E-value=8.4e-12 Score=124.51 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=44.6
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~ 298 (523)
..+++|++|+.++.+.+|+.+++. .+.||.+.+.+++ ...+++ +.||||+|+++
T Consensus 143 v~~~p~I~v~e~~~a~~li~~~~~-----~~~Gv~~~~~~~~---~~~~~a---------~~vVLATGG~g 196 (518)
T COG0029 143 VRNRPNITVLEGAEALDLIIEDGI-----GVAGVLVLNRNGE---LGTFRA---------KAVVLATGGLG 196 (518)
T ss_pred HhcCCCcEEEecchhhhhhhcCCc-----eEeEEEEecCCCe---EEEEec---------CeEEEecCCCc
Confidence 456699999999999999999873 4559999875445 677886 99999999985
No 38
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.43 E-value=9.5e-13 Score=142.47 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=45.8
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+.+.|++|+.++.|++|+.+++ +|.||.+.+ .+|+ .+.+.+ |.||||||+++.
T Consensus 167 ~~~~~gv~i~~~~~~~~Li~~~g------~v~Gv~~~~~~~G~---~~~i~A---------kaVVLATGG~g~ 221 (657)
T PRK08626 167 EAIKLGVPVHDRKEAIALIHDGK------RCYGAVVRCLITGE---LRAYVA---------KATLIATGGYGR 221 (657)
T ss_pred HHHhCCCEEEeeEEEEEEEEECC------EEEEEEEEEcCCCc---EEEEEc---------CeEEECCCcccC
Confidence 56678999999999999998765 999999986 4576 667776 999999999874
No 39
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.42 E-value=1.7e-12 Score=138.14 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~ 85 (523)
..++||||||+|.+|+++|++|+++.+|+||||+.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~ 40 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGP 40 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccC
Confidence 46799999999999999999999888999999996
No 40
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.41 E-value=1.2e-12 Score=138.31 Aligned_cols=50 Identities=26% Similarity=0.461 Sum_probs=42.8
Q ss_pred CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.|++|++++.|++|+.+++ ++.||.+.+.+|+ .+.+.+ +.||||+|+++.
T Consensus 142 ~gV~i~~~~~v~~Li~~~g------~v~Gv~~~~~~g~---~~~i~A---------k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG------RCIGVLTKDSEGK---LKRYYA---------DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC------EEEEEEEEECCCc---EEEEEc---------CeEEEecCCCcc
Confidence 6999999999999998765 8999998875566 666776 999999999874
No 41
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=1.4e-12 Score=139.94 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=44.4
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+++.|++|++++.|++|+.+++ +|.||...+ .+|+ .+.+.+ +.||||+|+++.
T Consensus 143 ~~~~~~gi~i~~~t~v~~L~~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVVlATGG~~~ 198 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILEDN------QAKGVVMYHIADGR---LEVVRA---------KAVMFATGGYGR 198 (575)
T ss_pred HHHhhCCCEEEeCcEEEEEEEECC------EEEEEEEEEcCCCe---EEEEEC---------CEEEECCCCCcC
Confidence 355678999999999999998765 899998754 3455 556776 999999999864
No 42
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.40 E-value=3.1e-12 Score=137.17 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=42.8
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
+..|+++++++.|++|+.+++ +|.||.+.+ .+|+ .+.+.+ +.||||+|+++.
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG------HVRGLVAMNMMEGT---LVQIRA---------NAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC------EEEEEEEEEcCCCc---EEEEEC---------CEEEECCCCCcC
Confidence 346899999999999998765 999998865 3465 567776 999999999864
No 43
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.39 E-value=3.3e-13 Score=137.23 Aligned_cols=191 Identities=21% Similarity=0.249 Sum_probs=90.4
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceeccc
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGG 132 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG 132 (523)
|||||||||++|++||+.|++ |++|+||||+..... ++ .+-|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk--------Ki-----------------------------l~tG 43 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK--------KI-----------------------------LITG 43 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H--------HH-----------------------------HHCG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc--------ce-----------------------------eecC
Confidence 899999999999999999999 999999999973311 00 1112
Q ss_pred ccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeE
Q 009873 133 SSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTA 212 (523)
Q Consensus 133 ~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 212 (523)
.+.+|.........++....+-..+.+.+.++.. -..++.+.+.+.|++.... . .+..
T Consensus 44 ~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~~-----~-----~gr~ 101 (409)
T PF03486_consen 44 NGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKIE-----E-----DGRV 101 (409)
T ss_dssp GGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE------S-----TTEE
T ss_pred CCCccccccccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEEc-----C-----CCEE
Confidence 2223322211111111111000111111112111 1245677888888742110 0 1122
Q ss_pred EcCCCeeechHhhh-hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEE
Q 009873 213 FDQCGKRHTSADLL-EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVI 291 (523)
Q Consensus 213 ~~~~g~~~~~~~~l-~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VI 291 (523)
++......+..+.| ..+++.|++|+++++|++|..+++ .+..|++. ++ ..+.+ +.||
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~------~~f~v~~~--~~-----~~~~a---------~~vI 159 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED------GVFGVKTK--NG-----GEYEA---------DAVI 159 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT------EEEEEEET--TT-----EEEEE---------SEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC------ceeEeecc--Cc-----ccccC---------CEEE
Confidence 23332222233333 366788999999999999999887 77778762 22 35777 9999
Q ss_pred EecCCchhHHHHHhhCCCChhhhhhCCCCceecCcc
Q 009873 292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQE 327 (523)
Q Consensus 292 LaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~ 327 (523)
||+|+...|++ =.+|.| -..++++|+.++...|.
T Consensus 160 LAtGG~S~p~~-GS~G~g-y~~a~~lGh~i~~~~Pa 193 (409)
T PF03486_consen 160 LATGGKSYPKT-GSDGSG-YRIAKKLGHTITPPYPA 193 (409)
T ss_dssp E----SSSGGG-T-SSHH-HHHHHHTT--EEEEEEE
T ss_pred EecCCCCcccc-CCCcHH-HHHHHHCCCcEecCCCc
Confidence 99999877763 111111 12455667666555554
No 44
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=2.6e-12 Score=138.75 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||||||||++|++||++|++ |++|+||||+.
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 457999999999999999999999 89999999986
No 45
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=2.9e-12 Score=137.57 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=44.5
Q ss_pred hCCCCCeEEEeccEEEEEEEcCC---CCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNN---GKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~---g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+++.|++|++++.|++|+.+++ + +|+||.+.+ .+|+ .+.+.+ +.||||+|+++.
T Consensus 149 ~~~~~gv~i~~~~~v~~Li~~~~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~ 207 (583)
T PRK08205 149 NCVKHGVEFFNEFYVLDLLLTETPSGP-----VAAGVVAYELATGE---IHVFHA---------KAVVFATGGSGR 207 (583)
T ss_pred HHHhcCCEEEeCCEEEEEEecCCccCC-----cEEEEEEEEcCCCe---EEEEEe---------CeEEECCCCCcc
Confidence 56678999999999999998762 3 899998864 3455 566776 999999999874
No 46
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=3.3e-12 Score=137.08 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=41.0
Q ss_pred CeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 233 NLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 233 g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
++++++++.+++|+.++++ +|+||.+.+.. ++ .+.+.+ +.||||||+++.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG-----VCRGIVAQDLFTME---IESFPA---------DAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC-----EEEEEEEEECCCCc---EEEEEC---------CEEEECCCCCcC
Confidence 4899999999999986543 99999998753 44 456665 999999999975
No 47
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=3.7e-12 Score=136.82 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=44.8
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+.+.|+++++++.|++|+.++++ +|.||.+.+. +|+ .+.+.+ |.||||+|+++.
T Consensus 156 ~~~~~~gi~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~ 212 (591)
T PRK07057 156 QQNVAAKTQFFVEWMALDLIRDADG-----DVLGVTALEMETGD---VYILEA---------KTTLFATGGAGR 212 (591)
T ss_pred HHHHhcCCEEEeCcEEEEEEEcCCC-----eEEEEEEEEcCCCe---EEEEEC---------CeEEECCCCccc
Confidence 3456789999999999999987543 8999998653 455 566765 999999999875
No 48
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.37 E-value=5.5e-12 Score=134.91 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=43.4
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
+.+|++++.++.|++|+.+++ +|.||.+.+ .+|+ .+.+.+ +.||||+|+++.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG------RVCGLVAIEMAEGR---LVTILA---------DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC------EEEEEEEEEcCCCc---EEEEec---------CEEEEcCCCCcc
Confidence 446899999999999999765 999998865 3566 667776 999999999874
No 49
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=5.8e-12 Score=135.33 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=42.5
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
+..|+++++++.|++|+.+++ +++||.+.+. +|+ .+.+.+ +.||||+|+++.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------k~VIlATGG~~~ 201 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVENG------VFKGVTAIDLKRGE---FKVFQA---------KAGIIATGGAGR 201 (577)
T ss_pred hcCCCEEEECCEEEEEEEECC------EEEEEEEEEcCCCe---EEEEEC---------CcEEEcCchhcc
Confidence 347999999999999998765 9999988663 455 556776 999999999863
No 50
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.35 E-value=6.8e-12 Score=132.24 Aligned_cols=53 Identities=13% Similarity=0.287 Sum_probs=42.9
Q ss_pred hCCC-CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNP-KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~-~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+++ +|++|++++.|++|+.+++ ++.||.+.+. ++ ...+.+ +.||||+|++..
T Consensus 137 ~~~~~~gi~i~~~~~v~~l~~~~g------~v~Gv~~~~~-~~---~~~i~A---------~~VVlAtGG~~~ 190 (488)
T TIGR00551 137 KALNHPNIRIIEGENALDLLIETG------RVVGVWVWNR-ET---VETCHA---------DAVVLATGGAGK 190 (488)
T ss_pred HHHhcCCcEEEECeEeeeeeccCC------EEEEEEEEEC-Cc---EEEEEc---------CEEEECCCcccC
Confidence 4444 7999999999999998765 8999988764 44 456776 999999999864
No 51
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.35 E-value=7.4e-12 Score=134.59 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+.+.|+++++++.|++|+.+++ +|+||.+.+. +|+ ...+.+ +.||||+|++..
T Consensus 137 ~~~~~~gv~i~~~~~v~~L~~~~g------~v~Gv~~~~~~~g~---~~~i~A---------k~VVlAtGG~~~ 192 (566)
T TIGR01812 137 EQCLKLGVSFFNEYFALDLIHDDG------RVRGVVAYDLKTGE---IVFFRA---------KAVVLATGGYGR 192 (566)
T ss_pred HHHHHcCCEEEeccEEEEEEEeCC------EEEEEEEEECCCCc---EEEEEC---------CeEEECCCcccC
Confidence 344566999999999999998765 9999988753 465 566776 999999999864
No 52
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.34 E-value=1.4e-11 Score=131.36 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=49.5
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS 306 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S 306 (523)
.+.+.|++++++++|++|..+++ +++||++.+. .++ ...+.+ +.||+|||++ +..|+...
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~~------~v~gv~v~d~~~g~---~~~i~A---------~~VVnAaG~w-a~~l~~~~ 218 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREGD------TVCGVRVRDHLTGE---TQEIHA---------PVVVNAAGIW-GQHIAEYA 218 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcCC------eEEEEEEEEcCCCc---EEEEEC---------CEEEECCChh-HHHHHHhc
Confidence 56778999999999999998776 8999998763 344 456886 9999999985 77777655
Q ss_pred CC
Q 009873 307 GI 308 (523)
Q Consensus 307 Gi 308 (523)
|+
T Consensus 219 g~ 220 (546)
T PRK11101 219 DL 220 (546)
T ss_pred CC
Confidence 54
No 53
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.28 E-value=2.7e-11 Score=129.54 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=41.7
Q ss_pred CCCCeEEEeccEEEEEEEcCCC-CCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873 230 NPKNLVVLLNATVNNIIFSNNG-KANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g-~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~ 298 (523)
.+.+++|++++.|++|+.++++ + +|.||.+.+. +|+ .+.+.+ |.||||+|+++
T Consensus 137 ~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANE---VHVFKA---------KTVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCc---EEEEEC---------CEEEECCCccc
Confidence 3456799999999999997531 1 8999988653 465 667776 99999999986
No 54
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.28 E-value=1.9e-11 Score=129.33 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=40.9
Q ss_pred CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
+.|++++.++.|++|+.+++ +|+||.+.+ .+. .+.+.+ +.||||+|+++.
T Consensus 149 ~~gV~i~~~~~v~~Li~~~g------~v~Gv~~~~-~~~---~~~i~A---------k~VVLATGG~~~ 198 (513)
T PRK07512 149 TPSITVLEGAEARRLLVDDG------AVAGVLAAT-AGG---PVVLPA---------RAVVLATGGIGG 198 (513)
T ss_pred CCCCEEEECcChhheeecCC------EEEEEEEEe-CCe---EEEEEC---------CEEEEcCCCCcC
Confidence 45999999999999988765 899999876 344 456776 999999999864
No 55
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.27 E-value=2.5e-11 Score=130.53 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
++.|++|++++.|++|+.++++ +|+||.+.+. +|+ .+.+.+ |.||||+|+++.
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd~g-----rV~GV~~~~~~~g~---~~~i~A---------kaVVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVDGN-----RARGIIARNLVTGE---IETHSA---------DAVILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcCCC-----EEEEEEEEECCCCc---EEEEEc---------CEEEECCCCCcC
Confidence 3468999999999999987544 8999998874 455 566776 999999999864
No 56
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.27 E-value=2.3e-10 Score=121.54 Aligned_cols=57 Identities=21% Similarity=0.146 Sum_probs=44.5
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..+++.|++|++++.|++|..+++ ++++|++.+ |+ ++.+ +.||+|++...+...|+.
T Consensus 227 ~~~~~~G~~i~~~~~V~~i~~~~~------~~~~V~~~~--g~-----~~~a---------d~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 227 KLAEDLGGELRLNAEVIRIETEGG------RATAVHLAD--GE-----RLDA---------DAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHHHHCCCEEEECCeEEEEEeeCC------EEEEEEECC--CC-----EEEC---------CEEEECCcHHHHHHHhcC
Confidence 356678999999999999998876 888887643 55 3565 999999998777766653
No 57
>PRK08275 putative oxidoreductase; Provisional
Probab=99.25 E-value=3e-11 Score=129.22 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=43.9
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
.+++.|++|++++.|++|+.++++ ++.||.+.+ .+|+ .+.+.+ |.||||+|+++.
T Consensus 146 ~~~~~gv~i~~~~~v~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------k~VIlATGG~~~ 201 (554)
T PRK08275 146 QLKRARVLITNRIMATRLLTDADG-----RVAGALGFDCRTGE---FLVIRA---------KAVILCCGAAGR 201 (554)
T ss_pred HHHHCCCEEEcceEEEEEEEcCCC-----eEEEEEEEecCCCc---EEEEEC---------CEEEECCCCccc
Confidence 456789999999999999997433 899998765 3465 566776 999999999853
No 58
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.25 E-value=6.6e-12 Score=127.07 Aligned_cols=57 Identities=32% Similarity=0.433 Sum_probs=44.6
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
.+++.|++|+++++|++|..+++ +++||++.+ |+ +.+ +.||+|+|+ +++.|+..+|
T Consensus 156 ~~~~~Gv~i~~~~~V~~i~~~~~------~v~gv~~~~--g~------i~a---------d~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 156 EAQRAGVEIRTGTEVTSIDVDGG------RVTGVRTSD--GE------IRA---------DRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHTT-EEEESEEEEEEEEETT------EEEEEEETT--EE------EEE---------CEEEE--GG-GHHHHHHTTT
T ss_pred HHHHhhhhccccccccchhhccc------ccccccccc--cc------ccc---------ceeEecccc-cceeeeeccc
Confidence 55677999999999999999998 888888643 43 887 999999997 6888888776
Q ss_pred C
Q 009873 308 I 308 (523)
Q Consensus 308 i 308 (523)
+
T Consensus 212 ~ 212 (358)
T PF01266_consen 212 L 212 (358)
T ss_dssp T
T ss_pred c
Confidence 5
No 59
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.22 E-value=7e-11 Score=127.30 Aligned_cols=35 Identities=31% Similarity=0.673 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
..++||||||||++|++||+++++ |.+|+||||+.
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 457999999999999999999988 79999999996
No 60
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.20 E-value=9.8e-11 Score=126.37 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=49.7
Q ss_pred hhCCCCCeEEEeccEEEEEEEcC-CCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSN-NGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~-~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
..+++.|++++++++|++|..++ ++ ++++|++.+. +++ .+++.+ +.||+|||++ +..|+.
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g-----~v~gV~v~d~~tg~---~~~i~a---------~~VVnAaGaw-s~~l~~ 301 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDESTG-----RIVGARVRDNLTGK---EFDVYA---------KVVVNAAGPF-CDEVRK 301 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCCC-----cEEEEEEEECCCCc---EEEEEe---------CEEEECCCHh-HHHHHH
Confidence 36778899999999999999874 33 8999988763 344 556787 9999999985 777777
Q ss_pred hhC
Q 009873 305 LSG 307 (523)
Q Consensus 305 ~SG 307 (523)
..|
T Consensus 302 ~~g 304 (627)
T PLN02464 302 MAD 304 (627)
T ss_pred hcc
Confidence 654
No 61
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.19 E-value=1.3e-10 Score=111.44 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+|||||||+|++|+++|++|++ |++|+||||..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 347999999999999999999999 99999999986
No 62
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.18 E-value=4.9e-09 Score=110.98 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=44.5
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
..+++.|++|++++.|++|..+++ ++.+|++.+ |+ ++.+ +.||+|+|...+-..|+
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~~~------~~~gv~~~~--g~-----~~~a---------d~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILENG------KAVGVKLAD--GE-----KIYA---------KRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEecCC------cEEEEEeCC--CC-----EEEc---------CEEEECCChHHHHHHhC
Confidence 466788999999999999998876 899998653 54 3565 89999999877665554
No 63
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.17 E-value=8.2e-11 Score=124.06 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=42.5
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~ 298 (523)
+..+++++.+..|++|+.++++ ++.||...+.+ |+ .+.+++ |.||+|+|+.+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~-----~v~Gvv~~~~~~g~---~~~~~a---------kavilaTGG~g 202 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGG-----GVAGVVARDLRTGE---LYVFRA---------KAVILATGGAG 202 (562)
T ss_pred HhhcchhhhhhhhhhheecCCC-----cEEEEEEEEecCCc---EEEEec---------CcEEEccCCce
Confidence 3367899999999999998773 59999887744 66 666665 99999999998
No 64
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.15 E-value=2.5e-10 Score=128.46 Aligned_cols=39 Identities=33% Similarity=0.518 Sum_probs=35.2
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+.+..++||||||||.+|+.+|+++++ |++|+||||+.
T Consensus 7 ~~~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 7 TDALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred CCcceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3445678999999999999999999999 89999999996
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.14 E-value=2.4e-10 Score=109.22 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||+|++|+++|+.|++ |++|+||||+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 47999999999999999999999 89999999996
No 66
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.14 E-value=9.2e-10 Score=111.11 Aligned_cols=63 Identities=22% Similarity=0.194 Sum_probs=48.2
Q ss_pred hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 226 LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 226 l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
...+.+.|+++..|++|++|..+++ .++-+.. .+|+ .. +.+ |.||.|||. .+-+|+.+
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~d------g~~~~~~--~~g~---~~-~~a---------k~Vin~AGl-~Ad~la~~ 217 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSD------GVFVLNT--SNGE---ET-LEA---------KFVINAAGL-YADPLAQM 217 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCC------ceEEEEe--cCCc---EE-EEe---------eEEEECCch-hHHHHHHH
Confidence 3356677999999999999999887 2222322 3466 44 777 999999997 69999999
Q ss_pred hCCCC
Q 009873 306 SGIGP 310 (523)
Q Consensus 306 SGig~ 310 (523)
+|+..
T Consensus 218 ~g~~~ 222 (429)
T COG0579 218 AGIPE 222 (429)
T ss_pred hCCCc
Confidence 99865
No 67
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.13 E-value=7.2e-10 Score=115.79 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=34.3
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
....+.+|||||||||+.|+++|+.|++ + .+|+||||..
T Consensus 39 ~~~~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 39 NRLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred ccccCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 3455678999999999999999999998 3 7999999985
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.13 E-value=8.8e-11 Score=105.71 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+|||+|||+|++|+++|+.|++ |+||+|+|+..
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 457999999999999999999999 99999999986
No 69
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.11 E-value=1.8e-08 Score=106.83 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=33.1
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
-||||||||.+|+++|..|++ |++|+|+||....++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 489999999999999999999 999999999986654
No 70
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.11 E-value=6.5e-10 Score=114.92 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=32.8
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc--c-CeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD--N-FSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae--g-~~VlvlE~G~ 85 (523)
+...+|||||||||..|+++|++|++ | .+|+||||+.
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 34568999999999999999999996 6 5999999985
No 71
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.11 E-value=2.8e-10 Score=118.45 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=45.1
Q ss_pred hhCCCCCeEEEeccEEEEEEEcC-CCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSN-NGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~-~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..+++.|++|+++++|++|+.++ ++ +++||...+ + ...+.+ |.||||+|+++..+-++.
T Consensus 131 ~~a~~~Gv~i~~~~~v~~l~~~~~~g-----~v~gv~~~~--~----~~~i~a---------k~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 131 SSAERLGVEIRYGIAVDRIPPEAFDG-----AHDGPLTTV--G----THRITT---------QALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHcCCEEEeCCEEEEEEecCCCC-----eEEEEEEcC--C----cEEEEc---------CEEEEcCCCcccCHHHHH
Confidence 35678899999999999999873 32 899987642 2 235666 999999999987665544
No 72
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=3e-09 Score=111.95 Aligned_cols=38 Identities=29% Similarity=0.493 Sum_probs=34.8
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
..+||||||||.+|+++|..||+ |++|+||||....++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 36899999999999999999999 999999999886655
No 73
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.10 E-value=1.3e-09 Score=115.31 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=44.7
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
.+.+.|++++.+++|++|..+++ ..+|.+.+..|+ ++++.+ +.||+|||++ +..++.
T Consensus 164 ~a~~~Ga~i~~~~~V~~i~~~~~-------~~~v~~~~~~g~---~~~i~a---------~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 164 DAAERGATILTRTRCVSARREGG-------LWRVETRDADGE---TRTVRA---------RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHHCCCEEecCcEEEEEEEcCC-------EEEEEEEeCCCC---EEEEEe---------cEEEECCCcc-HHHHHh
Confidence 56788999999999999987653 456777664466 677887 9999999985 666655
No 74
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.10 E-value=1.6e-09 Score=114.69 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=33.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
.++|||||||||+.|+.+|+.|+. |+||+||||++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999 999999999863
No 75
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.08 E-value=5.3e-10 Score=99.98 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=31.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+-||||||+|++|+++|++||+ |+||+|+||.-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 35799999999999999999999 89999999974
No 76
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.08 E-value=4.8e-09 Score=108.10 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=53.9
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS 306 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S 306 (523)
.+...|.++++.++|++++.+++ +.||++.|.. |+ .+.+++ +.||.|||.+ +-.++...
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~-------v~gV~~~D~~tg~---~~~ira---------~~VVNAaGpW-~d~i~~~~ 232 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGG-------VWGVEVEDRETGE---TYEIRA---------RAVVNAAGPW-VDEILEMA 232 (532)
T ss_pred HHHhcccchhhcceeeeeeecCC-------EEEEEEEecCCCc---EEEEEc---------CEEEECCCcc-HHHHHHhh
Confidence 56789999999999999998875 8999999855 67 888997 9999999985 77888777
Q ss_pred CCCCh
Q 009873 307 GIGPH 311 (523)
Q Consensus 307 Gig~~ 311 (523)
+..+.
T Consensus 233 ~~~~~ 237 (532)
T COG0578 233 GLEQS 237 (532)
T ss_pred cccCC
Confidence 66543
No 77
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.07 E-value=3.2e-09 Score=100.43 Aligned_cols=35 Identities=43% Similarity=0.635 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||||||+|.+|+++|.+||+ |++|++||...
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 357999999999999999999999 99999999875
No 78
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.07 E-value=2.3e-09 Score=112.44 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=30.6
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+||||||||.+|+++|.+|++ |++|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 89999999985
No 79
>PLN02661 Putative thiazole synthesis
Probab=99.06 E-value=1.2e-09 Score=107.45 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=32.5
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~ 85 (523)
...++||||||+|++|+++|+.|++ |++|+||||+.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 3567999999999999999999996 69999999975
No 80
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.06 E-value=6e-09 Score=109.22 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=45.5
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..+++.|++|+++++|++|..++++ .+ .|.+.+ ..|+ ..++.+ +.||+|||+. +.+|+..
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~~~~-----~v-~v~~~~~~~g~---~~~i~A---------~~VV~AAG~~-s~~La~~ 246 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQSDG-----SW-TVTVKNTRTGG---KRTLNT---------RFVFVGAGGG-ALPLLQK 246 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCC-----eE-EEEEeeccCCc---eEEEEC---------CEEEECCCcc-hHHHHHH
Confidence 3556679999999999999876542 22 233332 2243 345776 9999999984 7888888
Q ss_pred hCCC
Q 009873 306 SGIG 309 (523)
Q Consensus 306 SGig 309 (523)
.|+.
T Consensus 247 ~Gi~ 250 (483)
T TIGR01320 247 SGIP 250 (483)
T ss_pred cCCC
Confidence 8875
No 81
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.03 E-value=1.4e-09 Score=102.38 Aligned_cols=56 Identities=25% Similarity=0.478 Sum_probs=45.9
Q ss_pred CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhH-HHHHh
Q 009873 232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP-QLLLL 305 (523)
Q Consensus 232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp-~lLl~ 305 (523)
.-++|++|++|++|+.+++ +|.||++.+..|+ ...+.. ..||||+|+|+-. .-|++
T Consensus 158 e~~ki~~nskvv~il~n~g------kVsgVeymd~sge---k~~~~~---------~~VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRNNG------KVSGVEYMDASGE---KSKIIG---------DAVVLATGGFGYSDKELLK 214 (477)
T ss_pred HHHhhhhcceeeeeecCCC------eEEEEEEEcCCCC---ccceec---------CceEEecCCcCcChHHHHH
Confidence 3599999999999996666 9999999998888 656665 9999999999853 44443
No 82
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.02 E-value=1.3e-09 Score=114.24 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=32.7
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
.+.++||||||||++|+++|++|++ |.+|+|||++.
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4567999999999999999999997 58999999985
No 83
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.01 E-value=4.9e-09 Score=109.96 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=31.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
...|||||||||+.|+++|++|++ +.+|+||||..
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 456899999999999999999987 58999999986
No 84
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.99 E-value=5.8e-09 Score=106.79 Aligned_cols=32 Identities=44% Similarity=0.620 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|||||||||++|+++|++|++ |++|+|||++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 799999999999999999999 89999999986
No 85
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.98 E-value=4.6e-09 Score=108.71 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=30.8
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+||||||||++|+++|++|++ |++|+||||+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 599999999999999999999 89999999996
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.98 E-value=2.8e-10 Score=117.96 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=0.0
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
.+.+.|++|++++.|.+++.+++ ++.||++.++.| ..++.+ +.||-|+| ...|+.++|
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~------~i~~V~~~~~~g----~~~i~A---------~~~IDaTG---~g~l~~~aG 156 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG------RITGVIVETKSG----RKEIRA---------KVFIDATG---DGDLAALAG 156 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc------cccccccccccc----cccccc---------cccccccc---ccccccccc
Confidence 44678999999999999999877 999999987655 466876 99999999 457888887
Q ss_pred CC
Q 009873 308 IG 309 (523)
Q Consensus 308 ig 309 (523)
+.
T Consensus 157 ~~ 158 (428)
T PF12831_consen 157 AP 158 (428)
T ss_dssp --
T ss_pred cc
Confidence 63
No 87
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.96 E-value=6.5e-09 Score=106.28 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=32.1
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||||+.|+++|++|++ |++|+||||+.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 36899999999999999999999 99999999986
No 88
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.95 E-value=1.2e-08 Score=98.54 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=44.9
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhH
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp 300 (523)
++..+|+++ ++..|..|+.+++ .|.||++.++.|+ +.+..| ..-|+|-|-|..=
T Consensus 157 a~slpNV~~-eeGtV~sLlee~g------vvkGV~yk~k~ge---e~~~~A---------pLTvVCDGcfSnl 210 (509)
T KOG1298|consen 157 AASLPNVRL-EEGTVKSLLEEEG------VVKGVTYKNKEGE---EVEAFA---------PLTVVCDGCFSNL 210 (509)
T ss_pred HhcCCCeEE-eeeeHHHHHhccC------eEEeEEEecCCCc---eEEEec---------ceEEEecchhHHH
Confidence 667899998 5567899998887 8999999998888 767776 9999999988553
No 89
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.93 E-value=1.1e-08 Score=106.25 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||||||||.+|+++|++|++ |.+|+||||+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 79999999999999999999 89999999985
No 90
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.89 E-value=6.5e-09 Score=104.31 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=49.6
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
.|.+.|+++....+|.+|+.++++ ++.|++++|.- |+ ++.|++ |.||-|||.| |-.|+.
T Consensus 233 TA~r~GA~v~Nh~ev~~Llkd~~~-----kv~Ga~~rD~iTG~---e~~I~A---------k~VVNATGpf-sDsIr~ 292 (680)
T KOG0042|consen 233 TAARNGATVLNHVEVVSLLKDKDG-----KVIGARARDHITGK---EYEIRA---------KVVVNATGPF-SDSIRK 292 (680)
T ss_pred HHHhcchhhhhHHHHHHHhhCCCC-----ceeeeEEEEeecCc---EEEEEE---------EEEEeCCCCc-cHHHHh
Confidence 456899999999999999999886 89999998843 77 899998 9999999998 444433
No 91
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.89 E-value=7.7e-09 Score=107.29 Aligned_cols=36 Identities=42% Similarity=0.647 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
++|||||||||++|+++|+.|++ |++|+||||+..+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 46999999999999999999999 9999999999743
No 92
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.88 E-value=1.2e-08 Score=104.89 Aligned_cols=33 Identities=24% Similarity=0.648 Sum_probs=30.8
Q ss_pred cccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
.|||||||||++|+++|++|++ |++|+||||+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4899999999999999999996 69999999985
No 93
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.86 E-value=6.1e-09 Score=106.06 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|||||||||++|+++|++|++ |++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 99999999986
No 94
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.84 E-value=6.8e-09 Score=106.69 Aligned_cols=36 Identities=33% Similarity=0.737 Sum_probs=33.6
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
.+|||||||+|++|++||++|++ |++|+||||+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 47999999999999999999999 8999999999754
No 95
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.83 E-value=4.8e-08 Score=100.72 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=37.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPL 92 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~ 92 (523)
+++|||||||+|.+||++|..|+. |+|||+||+.+..++...
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 568999999999999999999999 999999999987765433
No 96
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.83 E-value=1.3e-07 Score=98.64 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
...+||||||||++|+++|+.|++ +.+|+||||-+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~ 41 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLD 41 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 356899999999999999999998 49999999943
No 97
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.81 E-value=1.1e-08 Score=99.62 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=52.2
Q ss_pred hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe----cCCCCCceeEEEecCCCCCCCCCcEEEecCCch-
Q 009873 225 LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK----SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG- 298 (523)
Q Consensus 225 ~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~----~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~- 298 (523)
+|. .|+..|++|..+..+..+++++++ .|.||-+.| ++|... ..++.|....++.-|+|-|.-+
T Consensus 188 wLg~kAEe~GvEiyPg~aaSevly~edg-----sVkGiaT~D~GI~k~G~pK-----d~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 188 WLGEKAEELGVEIYPGFAASEVLYDEDG-----SVKGIATNDVGISKDGAPK-----DTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred HHHHHHHhhCceeccccchhheeEcCCC-----cEeeEeeccccccCCCCcc-----ccccccceecceeEEEeccccch
Confidence 454 678899999999999999999887 899998766 233310 0111222223499999988766
Q ss_pred -hHHHHHhhCCC
Q 009873 299 -SPQLLLLSGIG 309 (523)
Q Consensus 299 -tp~lLl~SGig 309 (523)
|-+++.+-++.
T Consensus 258 Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 258 LSKQIIKKFDLR 269 (621)
T ss_pred hHHHHHHHhCcc
Confidence 56777776554
No 98
>PRK10015 oxidoreductase; Provisional
Probab=98.81 E-value=7.9e-09 Score=107.12 Aligned_cols=37 Identities=41% Similarity=0.689 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
+++|||||||||++|+++|+.|++ |++|+||||+..+
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 357999999999999999999999 9999999999743
No 99
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.80 E-value=2.3e-08 Score=95.11 Aligned_cols=39 Identities=36% Similarity=0.397 Sum_probs=35.0
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
+.+..|+||||+|.-|+++|++|++ |.++|+||+-+.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 4567899999999999999999999 89999999987553
No 100
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.79 E-value=2.5e-07 Score=91.36 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=49.5
Q ss_pred hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 226 LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 226 l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
...+++.|.+|.|++.|..|+.|++ ++.||...+ |+ ++++ |.||-.|+-+.|=.-|+.
T Consensus 271 a~~~~~~GaeI~tka~Vq~Illd~g------ka~GV~L~d--G~-----ev~s---------k~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 271 AEGAKRAGAEIFTKATVQSILLDSG------KAVGVRLAD--GT-----EVRS---------KIVVSNATPWDTFEKLLP 328 (561)
T ss_pred HHHHHhccceeeehhhhhheeccCC------eEEEEEecC--Cc-----EEEe---------eeeecCCchHHHHHHhCC
Confidence 3477899999999999999999996 999999876 76 4665 899999999888855554
Q ss_pred hC
Q 009873 306 SG 307 (523)
Q Consensus 306 SG 307 (523)
-+
T Consensus 329 ~e 330 (561)
T KOG4254|consen 329 GE 330 (561)
T ss_pred Cc
Confidence 43
No 101
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.76 E-value=4.9e-08 Score=102.87 Aligned_cols=34 Identities=35% Similarity=0.621 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||||.||+.||..||+ |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 46999999999999999999999 99999999874
No 102
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.76 E-value=1.6e-07 Score=96.28 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||||||+|++|+++|+.|++ |.+|+|+|++.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 357899999999999999999999 89999999987
No 103
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.74 E-value=6.9e-08 Score=99.22 Aligned_cols=29 Identities=41% Similarity=0.688 Sum_probs=27.8
Q ss_pred EEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 57 IVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 57 IIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||||||++|+++|++|++ |++|+||||++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 699999999999999999 89999999987
No 104
>PLN02985 squalene monooxygenase
Probab=98.74 E-value=1.6e-07 Score=99.39 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=34.8
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+...+..+||||||||++|+++|..|++ |.+|+||||..
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3445678999999999999999999999 99999999974
No 105
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=88.03 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+++|||+|++|+++|+.|++ |++|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 69999999999999999999 99999999996
No 106
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.72 E-value=1.1e-07 Score=99.44 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=44.6
Q ss_pred hhCCCCCeEEEeccEEEEEEEc-CCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFS-NNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~-~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+++.|++|+++++|++|+++ ++++ .+|+||++.. +|+ ...+.. .+++.||+++|++..
T Consensus 234 ~~Le~~GV~f~~~t~VtdL~~~~d~~~---~~VtgI~~~~-~~~---~~~I~l------~~~DlVivTnGs~t~ 294 (576)
T PRK13977 234 KYLEDHGVDFQYGTKVTDIDFDITGGK---KTATAIHLTR-NGK---EETIDL------TEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCCCc---eEEEEEEEEe-CCc---eeEEEe------cCCCEEEEeCCcCcc
Confidence 3678899999999999999996 3221 2899999976 344 333332 358999999999853
No 107
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.68 E-value=5.9e-08 Score=97.04 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=37.2
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~ 298 (523)
....+|++|+ +.+|++|+.+++ +|.||... +|+ .+.+ +.||+|+|.|.
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e~~------~v~GV~~~--~g~-----~~~a---------~~vVlaTGtfl 152 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVENG------KVKGVVTK--DGE-----EIEA---------DAVVLATGTFL 152 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEECTT------EEEEEEET--TSE-----EEEE---------CEEEE-TTTGB
T ss_pred HhcCCCeEEE-EcccceEEecCC------eEEEEEeC--CCC-----EEec---------CEEEEeccccc
Confidence 3457999996 689999999987 99999875 355 4776 99999999953
No 108
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.65 E-value=1.6e-07 Score=102.99 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++||||||||++|+++|++|++ |++|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5899999999999999999999 99999999985
No 109
>PLN02697 lycopene epsilon cyclase
Probab=98.64 E-value=1.3e-06 Score=91.97 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+..|||||||+|++|+++|..|++ |++|+|||++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 456999999999999999999999 99999999863
No 110
>PRK06185 hypothetical protein; Provisional
Probab=98.63 E-value=2.6e-07 Score=95.57 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=33.1
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+..+|||+|||||++|+++|+.|++ |++|+|||+.+
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3467999999999999999999999 99999999985
No 111
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.61 E-value=3e-06 Score=85.14 Aligned_cols=66 Identities=29% Similarity=0.360 Sum_probs=50.8
Q ss_pred hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873 225 LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL 302 (523)
Q Consensus 225 ~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l 302 (523)
++. ..+++|+++.++++|++|...+++ -.-|.+.+. .|+ ...+++ +-|++.||| ++=.|
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg------~W~v~~~~~~~~~---~~~v~a---------~FVfvGAGG-~aL~L 247 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG------RWEVKVKDLKTGE---KREVRA---------KFVFVGAGG-GALPL 247 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC------CEEEEEEecCCCC---eEEEEC---------CEEEECCch-HhHHH
Confidence 344 445569999999999999998874 234444442 355 677887 999999999 69999
Q ss_pred HHhhCCC
Q 009873 303 LLLSGIG 309 (523)
Q Consensus 303 Ll~SGig 309 (523)
|++|||.
T Consensus 248 Lqksgi~ 254 (488)
T PF06039_consen 248 LQKSGIP 254 (488)
T ss_pred HHHcCCh
Confidence 9999984
No 112
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=2.9e-07 Score=98.74 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=46.3
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+.+.|++|++++.+++|+.++++ +|+||.+.+ .+|+ .+.+.+ |.||||||+++.
T Consensus 134 ~~~~~~gi~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~ 190 (570)
T PRK05675 134 QGNLKNGTTFLNEWYAVDLVKNQDG-----AVVGVIAICIETGE---TVYIKS---------KATVLATGGAGR 190 (570)
T ss_pred HHHhccCCEEEECcEEEEEEEcCCC-----eEEEEEEEEcCCCc---EEEEec---------CeEEECCCCccc
Confidence 3556789999999999999987544 999999865 4576 677776 999999999985
No 113
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.56 E-value=1.2e-06 Score=83.45 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=32.4
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~ 85 (523)
.-..++||+|||+|..|+++|+-|.| |++|+|+||.+
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 34568999999999999999999865 59999999986
No 114
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.54 E-value=9.4e-07 Score=91.62 Aligned_cols=37 Identities=35% Similarity=0.621 Sum_probs=33.7
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
...+|||+|||||++|+++|..|++ |++|+|+||.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3457999999999999999999999 999999999873
No 115
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.52 E-value=6.3e-07 Score=93.44 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||||++|+++|.+|.+ |++|+|+||++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV 45 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35789999999999999999998 9999999998733
No 116
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.49 E-value=1.2e-07 Score=87.86 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=33.8
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
.+++.+++++++++|+++..+++ + .-|++. +++ ++.+ +.||+|+|.+..|+.+..-|
T Consensus 91 ~~~~~~l~i~~~~~V~~v~~~~~------~-w~v~~~--~~~-----~~~a---------~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 91 YAERFGLEIRFNTRVESVRRDGD------G-WTVTTR--DGR-----TIRA---------DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHTTGGEETS--EEEEEEETT------T-EEEEET--TS------EEEE---------EEEEE---SSCSB---S-TT
T ss_pred HHhhcCcccccCCEEEEEEEecc------E-EEEEEE--ecc-----eeee---------eeEEEeeeccCCCCcccccc
Confidence 45566777999999999999976 4 234432 343 4667 99999999998998765443
No 117
>PRK06126 hypothetical protein; Provisional
Probab=98.48 E-value=2.6e-06 Score=91.61 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||+|||||++|+++|+.|++ |.+|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 457999999999999999999999 99999999875
No 118
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.48 E-value=1e-06 Score=90.70 Aligned_cols=35 Identities=40% Similarity=0.573 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...+||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 467999999999999999999999 99999999986
No 119
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.46 E-value=8.5e-07 Score=87.20 Aligned_cols=32 Identities=41% Similarity=0.730 Sum_probs=30.9
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|||+|||||++|+++|+.|++ |.+|+||||..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 799999999999999999999 89999999986
No 120
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.41 E-value=2.6e-06 Score=89.63 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+|||||||||++|+.+|++|++ |++|+|+|++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 356999999999999999999999 99999999975
No 121
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.41 E-value=3.6e-06 Score=90.18 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||+|||+|++|+++|..|++ |.+|+||||..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 467999999999999999999999 99999999986
No 122
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.41 E-value=1.6e-06 Score=89.00 Aligned_cols=31 Identities=39% Similarity=0.758 Sum_probs=30.2
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
|||||||||++|+++|+.|++ |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 123
>PRK07208 hypothetical protein; Provisional
Probab=98.40 E-value=2e-06 Score=90.92 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.3
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
.+..||||||||++|+++|++|++ |++|+|+|+.+..++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 356799999999999999999999 999999999875544
No 124
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.39 E-value=1.7e-06 Score=92.92 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=45.9
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t 299 (523)
..+.+.|++|++++.|++|+.+++ +|+||...+ .+|+ .+.+.+ |.||||||+++.
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~~g------~v~Ga~~~~~~~g~---~~~i~A---------kaVILATGG~~~ 182 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLMEDG------ECRGVIAYCLETGE---IHRFRA---------KAVVLATGGYGR 182 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEeeCC------EEEEEEEEEcCCCc---EEEEEe---------CeEEECCCCccc
Confidence 356678999999999999998755 999999865 3466 677876 999999999975
No 125
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.39 E-value=1.9e-06 Score=89.65 Aligned_cols=38 Identities=32% Similarity=0.589 Sum_probs=35.0
Q ss_pred cccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 48 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+...+|||||||||++|+++|+.|++ |++|+||||..
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 466778999999999999999999999 99999999974
No 126
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.39 E-value=2.9e-06 Score=87.12 Aligned_cols=35 Identities=37% Similarity=0.631 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
.++||||||||++|+++|+.|++ |.+|+|+||+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46899999999999999999999 999999999873
No 127
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.38 E-value=5.9e-07 Score=90.68 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=30.0
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
+|||||||||++|+++|..|++ |++|+|+||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 5899999999999999999999 899999999863
No 128
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=3.1e-06 Score=89.19 Aligned_cols=34 Identities=32% Similarity=0.667 Sum_probs=32.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
..+||+||||||++|+.+|.+|++ |++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 457999999999999999999999 9999999986
No 129
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.36 E-value=4.4e-06 Score=85.64 Aligned_cols=33 Identities=36% Similarity=0.630 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||||||+|.+|+++|+.|++ |++|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999 99999999985
No 130
>PRK08244 hypothetical protein; Provisional
Probab=98.36 E-value=3.4e-06 Score=89.45 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||+|||||++|+++|..|++ |.+|+||||.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4899999999999999999999 99999999986
No 131
>PRK06847 hypothetical protein; Provisional
Probab=98.35 E-value=4.3e-06 Score=85.47 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=31.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+..||+|||||++|+++|..|++ |.+|+|+|+.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45799999999999999999999 99999999976
No 132
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.35 E-value=3.6e-06 Score=86.56 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++||+|||+|++|+++|+.|++ |.+|+|+||.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 5799999999999999999999 99999999986
No 133
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=4e-06 Score=88.21 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=32.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+||+||||+|++|..+|.+|++ |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 356999999999999999999999 99999999874
No 134
>PRK07045 putative monooxygenase; Reviewed
Probab=98.35 E-value=4.4e-06 Score=85.77 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||+|||||++|+++|..|++ |++|+|+||.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 457899999999999999999999 99999999997
No 135
>PRK08013 oxidoreductase; Provisional
Probab=98.33 E-value=4.5e-06 Score=86.08 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=32.0
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
+|||||||+|++|+++|+.|++ |++|+||||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5899999999999999999999 999999999873
No 136
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.33 E-value=5.6e-06 Score=85.57 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||+|||||++|+++|+.|++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999985
No 137
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.32 E-value=4.6e-06 Score=86.60 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=33.1
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCe-eEEEecCCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFS-VLLVERGGS 86 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~~ 86 (523)
....+||+|||||.+|+++|++|.+ |.. ++++||.+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 3467899999999999999999998 866 999999973
No 138
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.32 E-value=4.5e-06 Score=85.86 Aligned_cols=35 Identities=37% Similarity=0.639 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||||||+|++|+++|..|++ |++|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 467999999999999999999999 99999999975
No 139
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.32 E-value=2.9e-06 Score=89.58 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=30.5
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|||||||+|.+|+.+|..+++ |.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999974
No 140
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.31 E-value=5.4e-06 Score=84.10 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=45.8
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
.+++.|++++.+++|+++..+++ ++++|.+.+ ++ ...+.+ +.||||+|++-|..|+..
T Consensus 272 ~~~~~Gg~il~g~~V~~i~~~~~------~v~~V~t~~--g~---~~~l~A---------D~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 272 RFEQLGGVMLPGDRVLRAEFEGN------RVTRIHTRN--HR---DIPLRA---------DHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHCCCEEEECcEEEEEEeeCC------eEEEEEecC--Cc---cceEEC---------CEEEEccCCCcCHHHHhh
Confidence 55678999999999999998887 888877643 32 234776 999999999877777554
No 141
>PRK07190 hypothetical protein; Provisional
Probab=98.30 E-value=3.8e-06 Score=88.50 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...+||||||||++|+++|+.|++ |.+|+||||.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 456899999999999999999998 99999999986
No 142
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.30 E-value=2.9e-06 Score=87.24 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=30.4
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+||||||||++|+++|+.|++ |++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999964
No 143
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.30 E-value=1.2e-05 Score=80.07 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=34.5
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc------cCeeEEEecCC
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD------NFSVLLVERGG 85 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae------g~~VlvlE~G~ 85 (523)
...+...||+||||+|++|+.+|++++. .++|++||+|.
T Consensus 12 ~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~ 56 (486)
T COG2509 12 EALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL 56 (486)
T ss_pred HHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence 4556788999999999999999999984 37899999997
No 144
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.29 E-value=3e-06 Score=87.57 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=51.8
Q ss_pred EEcCCCeeechH--hhhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCC
Q 009873 212 AFDQCGKRHTSA--DLLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288 (523)
Q Consensus 212 ~~~~~g~~~~~~--~~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~ 288 (523)
+.+.+|..-++. ..|. +|++.|+.|+.+|.|++|....+ +..||++.. |. |.+ .
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~------~~~gVeT~~--G~------iet---------~ 233 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD------KFGGVETPH--GS------IET---------E 233 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC------CccceeccC--cc------eec---------c
Confidence 334455444332 2354 78899999999999999999888 566998754 76 776 8
Q ss_pred cEEEecCCchhHHHHHhhCC
Q 009873 289 DVILSAGALGSPQLLLLSGI 308 (523)
Q Consensus 289 ~VILaaGa~~tp~lLl~SGi 308 (523)
.||-|||-+. -..-.++|+
T Consensus 234 ~~VNaaGvWA-r~Vg~m~gv 252 (856)
T KOG2844|consen 234 CVVNAAGVWA-REVGAMAGV 252 (856)
T ss_pred eEEechhHHH-HHhhhhcCC
Confidence 9999999765 333445554
No 145
>PRK06184 hypothetical protein; Provisional
Probab=98.28 E-value=9.4e-06 Score=86.32 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=31.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5899999999999999999999 99999999986
No 146
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.27 E-value=4.4e-06 Score=86.25 Aligned_cols=33 Identities=30% Similarity=0.557 Sum_probs=30.9
Q ss_pred cccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
.|||||||||++|+++|+.|++ | .+|+||||.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 3899999999999999999998 6 9999999986
No 147
>PRK06834 hypothetical protein; Provisional
Probab=98.27 E-value=6.4e-06 Score=86.88 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++||||||+|++|+++|+.|++ |.+|+||||.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5899999999999999999999 99999999986
No 148
>PRK11445 putative oxidoreductase; Provisional
Probab=98.26 E-value=1e-05 Score=81.81 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=30.4
Q ss_pred ccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSDNFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~ 85 (523)
|||+|||+|++|+++|+.|++..+|+||||.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCC
Confidence 89999999999999999998879999999986
No 149
>PRK09126 hypothetical protein; Provisional
Probab=98.24 E-value=6.2e-06 Score=84.80 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=32.2
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
+|||||||||++|+++|+.|++ |++|+|+||...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 5899999999999999999999 999999999973
No 150
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=1.7e-05 Score=84.53 Aligned_cols=34 Identities=41% Similarity=0.584 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||||++|+++|..|++ |.+|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 57999999999999999999999 99999999974
No 151
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.24 E-value=1.1e-05 Score=82.76 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGS 86 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~ 86 (523)
||||||||++|+++|+.|++ | ++|+|+||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 89999999999999999999 9 99999999863
No 152
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.23 E-value=8.5e-06 Score=83.49 Aligned_cols=33 Identities=33% Similarity=0.619 Sum_probs=31.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
||||||||++|+++|+.|++ |.+|+|+||.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999743
No 153
>PLN02507 glutathione reductase
Probab=98.23 E-value=8.8e-06 Score=86.09 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=31.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER 83 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~ 83 (523)
..+||+||||||++|..+|.+|++ |+||+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 557999999999999999999999 999999997
No 154
>PTZ00058 glutathione reductase; Provisional
Probab=98.21 E-value=1.8e-06 Score=91.90 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=33.1
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...+||+||||+|++|..+|.+|++ |++|+||||+.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3468999999999999999999999 99999999974
No 155
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.19 E-value=2.1e-05 Score=84.52 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..++||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 467999999999999999999999 99999999986
No 156
>PRK07588 hypothetical protein; Provisional
Probab=98.17 E-value=1.8e-05 Score=81.30 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||+|||||++|+++|+.|++ |.+|+|+||.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 89999999999999999999 99999999985
No 157
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.15 E-value=1.5e-06 Score=64.91 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=27.0
Q ss_pred EECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 58 VVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 58 IVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
|||||++|+++|++|++ |.+|+|+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 89999999999999999 8999999999743
No 158
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.14 E-value=7.7e-06 Score=84.01 Aligned_cols=31 Identities=35% Similarity=0.600 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||||||||++|+++|+.|++ |++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 89999999999999999999 99999999986
No 159
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.12 E-value=1.2e-05 Score=82.43 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=30.9
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.+||+|||||++|+++|..|++ |++|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5899999999999999999999 9999999997
No 160
>PRK07236 hypothetical protein; Provisional
Probab=98.11 E-value=3.3e-05 Score=79.28 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=31.2
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..||||||||++|+++|+.|++ |++|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4799999999999999999999 99999999985
No 161
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.11 E-value=2.1e-05 Score=81.07 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=31.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...||+|||||++|+++|..|++ |.+|+|+||.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 35799999999999999999999 99999999986
No 162
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.09 E-value=2e-05 Score=80.95 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+||+|||||++|+++|..|++ |++|+|+||.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4799999999999999999999 99999999986
No 163
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.05 E-value=3.3e-05 Score=79.82 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=30.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.|||+|||+|++|+++|..|++ |++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5899999999999999999999 9999999996
No 164
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=8.2e-06 Score=83.08 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=31.1
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||+|-||+-||..+|+ |.+++||--..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 45999999999999999999999 99999997664
No 165
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.04 E-value=4.4e-05 Score=79.64 Aligned_cols=32 Identities=44% Similarity=0.811 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~ 85 (523)
|||||||||++|+++|+.|++ |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999986 79999999964
No 166
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.03 E-value=3.3e-06 Score=88.31 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++|||||||||++|..+|.+|++ |++|+|+||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 47999999999999999999999 99999999964
No 167
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.03 E-value=1.8e-05 Score=83.76 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=27.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
-|+|||||++|+++|..|.| |++|+++||.+..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence 38999999999999999998 9999999998744
No 168
>PRK06996 hypothetical protein; Provisional
Probab=97.99 E-value=8.9e-05 Score=76.41 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=32.8
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc-c----CeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD-N----FSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g----~~VlvlE~G~ 85 (523)
+...+|||+|||+|++|+++|+.|++ | ++|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45667999999999999999999998 6 4799999975
No 169
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.98 E-value=8.3e-05 Score=79.30 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=50.6
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS 306 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S 306 (523)
.+.+.|++|+++++|++|..+++ ++.||++.+. .|+ ...+.+ +.||+|||++ +..|+...
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~------~v~gv~v~~~~~g~---~~~i~a---------~~VVnAaG~w-a~~l~~~~ 197 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGG------RVTGVKVEDHKTGE---EERIEA---------QVVINAAGIW-AGRIAEYA 197 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECC------EEEEEEEEEcCCCc---EEEEEc---------CEEEECCCcc-hHHHHHhc
Confidence 67788999999999999998776 8999998753 355 566887 9999999985 77887766
Q ss_pred CC
Q 009873 307 GI 308 (523)
Q Consensus 307 Gi 308 (523)
|+
T Consensus 198 g~ 199 (516)
T TIGR03377 198 GL 199 (516)
T ss_pred CC
Confidence 65
No 170
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=9.6e-06 Score=84.68 Aligned_cols=33 Identities=42% Similarity=0.596 Sum_probs=31.7
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||||||||++|+.+|.+|++ |++|+|+||++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999999999999999999 99999999985
No 171
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.97 E-value=6.5e-05 Score=85.95 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...+||+|||||++|++||..|++ |++|+|+|+++
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 356899999999999999999999 99999999986
No 172
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.97 E-value=5.2e-06 Score=86.84 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=31.2
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+||+||||+|++|..+|++|++ |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence 6999999999999999999999 99999999963
No 173
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=6.9e-06 Score=78.13 Aligned_cols=39 Identities=36% Similarity=0.612 Sum_probs=34.8
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNP 91 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~ 91 (523)
.||+||||||.+|+++|..|++ |++||||||.+..+++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 3899999999999999999999 99999999998666543
No 174
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.97 E-value=2.2e-05 Score=80.05 Aligned_cols=31 Identities=42% Similarity=0.673 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHhhh--hc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATL--SD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~L--ae-g~~VlvlE~G~ 85 (523)
||||||+|++|+++|++| ++ |++|+|||+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~ 34 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKP 34 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 899999999999999999 66 89999999986
No 175
>PRK06370 mercuric reductase; Validated
Probab=97.95 E-value=6.5e-06 Score=86.58 Aligned_cols=35 Identities=43% Similarity=0.722 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+|||||||||++|..+|.+|++ |++|+|+|++.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 457999999999999999999999 99999999974
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.95 E-value=6.1e-05 Score=80.26 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=31.6
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
....|||+|||||++|+++|.+|++ |++|+|+|+.
T Consensus 208 ~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~ 243 (517)
T PRK15317 208 AKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER 243 (517)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3557999999999999999999999 9999999763
No 177
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=6.9e-06 Score=86.32 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=30.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
+||+||||+|++|+.+|.+|++ |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999 9999999974
No 178
>PRK06116 glutathione reductase; Validated
Probab=97.91 E-value=7.8e-06 Score=85.67 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||||++|+.+|.+|++ |++|+|+|++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 57999999999999999999999 99999999973
No 179
>PRK06753 hypothetical protein; Provisional
Probab=97.90 E-value=0.00018 Score=73.51 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||||||||++|+++|+.|++ |++|+|+||.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 79999999999999999999 99999999987
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.87 E-value=9.8e-05 Score=78.64 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=30.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER 83 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~ 83 (523)
...|||+|||||++|+++|.+|++ |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999974
No 181
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.86 E-value=1.8e-05 Score=82.50 Aligned_cols=33 Identities=45% Similarity=0.705 Sum_probs=26.8
Q ss_pred cEEEECCCCchHHHHhhhhc-c---CeeEEEecCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N---FSVLLVERGGSP 87 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g---~~VlvlE~G~~~ 87 (523)
||||||+|++|..+|..|++ + .+|+|||+...+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 79999999999999999998 5 899999998744
No 182
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.85 E-value=0.00017 Score=70.33 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=32.4
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+||+||||+|++|-+||.++++ |++...+|+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 68999999999999999999999 99999999965
No 183
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=1.1e-05 Score=84.99 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=32.2
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+||+||||||++|+.+|.+|++ |++|+|+||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 57999999999999999999999 99999999975
No 184
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.84 E-value=0.00014 Score=69.05 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=34.6
Q ss_pred ccccCCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 47 KEVAGKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
+......||.||||+|+.|++.|++|.- +++|+||||..
T Consensus 42 ~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~ 83 (453)
T KOG2665|consen 42 ESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK 83 (453)
T ss_pred cccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence 4566788999999999999999999874 69999999986
No 185
>PRK05868 hypothetical protein; Validated
Probab=97.83 E-value=0.00024 Score=72.50 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||+|||+|++|+++|+.|++ |++|+|+||.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 89999999999999999999 99999999986
No 186
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.82 E-value=7.6e-05 Score=76.77 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=30.8
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
-+|+|||||++||++|+.|.+ |+.|.++||.+.
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 479999999999999999988 999999999973
No 187
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.82 E-value=1.4e-05 Score=82.50 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+||+||||+|++|-++|.+|++ |+||+++|++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 458999999999999999999999 88899999995
No 188
>PLN02546 glutathione reductase
Probab=97.82 E-value=1.5e-05 Score=85.02 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER 83 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~ 83 (523)
..+|||||||+|++|..+|.+|++ |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 457999999999999999999999 999999996
No 189
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.81 E-value=0.00011 Score=68.88 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=42.4
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
+.++.|++++.+ +|..+.-+.. |+.+|......+. .+...+ ..+|||+|. +|++||..-+
T Consensus 157 a~k~~~V~lv~G-kv~ev~dEk~------r~n~v~~ae~~~t---i~~~d~---------~~ivvsaGP-WTskllp~~r 216 (380)
T KOG2852|consen 157 AEKRGGVKLVFG-KVKEVSDEKH------RINSVPKAEAEDT---IIKADV---------HKIVVSAGP-WTSKLLPFTR 216 (380)
T ss_pred HHhhcCeEEEEe-eeEEeecccc------cccccchhhhcCc---eEEeee---------eEEEEecCC-Cchhhccccc
Confidence 455667999876 5777763334 8888866543343 445555 899999998 5999988765
Q ss_pred C
Q 009873 308 I 308 (523)
Q Consensus 308 i 308 (523)
|
T Consensus 217 I 217 (380)
T KOG2852|consen 217 I 217 (380)
T ss_pred c
Confidence 5
No 190
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=1.4e-05 Score=83.51 Aligned_cols=40 Identities=40% Similarity=0.561 Sum_probs=35.2
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
..+..+|||||||++|++||+.|.+ |.+|+|||+-+..++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3467899999999999999999999 999999999875543
No 191
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=1.6e-05 Score=83.68 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.8
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 36999999999999999999999 99999999974
No 192
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.80 E-value=1.5e-05 Score=81.94 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+.|||||||+|++|+++|+.|++ |.+|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 456899999999999999999999 99999999975
No 193
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.80 E-value=1.4e-05 Score=83.53 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=31.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||||||||++|+.+|.+|++ |++|+|+|+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 6999999999999999999999 99999999975
No 194
>PRK07538 hypothetical protein; Provisional
Probab=97.79 E-value=0.0002 Score=74.14 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||+|||||++|+++|+.|++ |++|+|+||.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 89999999999999999999 99999999976
No 195
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=0.00016 Score=69.65 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=33.6
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...++||++|||+|.+|..+|+++++ |.||.|+|...
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 34568999999999999999999999 99999999874
No 196
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.75 E-value=0.00036 Score=73.45 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|+||||+|++|+.+|..|++ |++|+|+||+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999874
No 197
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.75 E-value=2e-05 Score=82.92 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=30.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
+|||||||||++|+.+|.+|++ |++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4999999999999999999999 9999999994
No 198
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.75 E-value=2.1e-05 Score=82.79 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=31.0
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.+||+||||||++|+.+|.+|++ |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35999999999999999999999 9999999994
No 199
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.73 E-value=2.1e-05 Score=85.07 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
+++|||||||+|++|..+|.++++ |+||+|||++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 458999999999999999999999 9999999975
No 200
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.73 E-value=2.3e-05 Score=79.07 Aligned_cols=36 Identities=47% Similarity=0.707 Sum_probs=32.3
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
+||+|||||++|+++|.+|++ |.+|+|||+....++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999998 899999999764433
No 201
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.71 E-value=3e-05 Score=81.68 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=30.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc--cCeeEEEecC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERG 84 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G 84 (523)
++||+||||+|++|..+|.++++ |+||+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 57999999999999999999998 6999999985
No 202
>PRK14694 putative mercuric reductase; Provisional
Probab=97.70 E-value=3e-05 Score=81.67 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=33.4
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...+|||||||||++|+++|.+|++ |++|+|+|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3568999999999999999999999 99999999974
No 203
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.69 E-value=2.5e-05 Score=82.13 Aligned_cols=32 Identities=31% Similarity=0.615 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||+||||||++|..+|.+|++ |++|+|+||+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999 99999999975
No 204
>PRK13748 putative mercuric reductase; Provisional
Probab=97.69 E-value=2.9e-05 Score=83.78 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+|||||||+|++|+.+|.+|++ |++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 47999999999999999999999 99999999974
No 205
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.67 E-value=2.7e-05 Score=79.87 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=31.1
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||+|||||++|+++|+.|++ |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999 99999999874
No 206
>PLN02463 lycopene beta cyclase
Probab=97.67 E-value=2.7e-05 Score=80.79 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=32.3
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...|||||||+|++|+++|..|++ |++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 456999999999999999999999 99999999965
No 207
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=3.6e-05 Score=81.19 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=31.1
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.+||+||||+|++|+++|.+|++ |++|+|||++
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~ 36 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAW 36 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 47999999999999999999999 9999999983
No 208
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.65 E-value=3.1e-05 Score=83.12 Aligned_cols=34 Identities=24% Similarity=0.595 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+.|||||||||++|+++|..|++ |++|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 46999999999999999999999 99999999975
No 209
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.3e-05 Score=75.71 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=30.2
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~ 85 (523)
+.|||||||||++|++||..++. +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 46999999999999999999999 888 77777764
No 210
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.64 E-value=5.1e-05 Score=67.80 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=30.0
Q ss_pred cccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
+-||||||+|.+|+++|+..++ +++|.+||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 5699999999999999999996 59999999874
No 211
>PLN02676 polyamine oxidase
Probab=97.60 E-value=5.2e-05 Score=79.89 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSPFG 89 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~~~ 89 (523)
..+||||||||++|+++|++|++ |. +|+|||+.+..++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 46799999999999999999999 87 6999999875543
No 212
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.60 E-value=4.1e-05 Score=75.47 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=30.5
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|||||||||++|+.+|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999998 99999999985
No 213
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.60 E-value=0.00035 Score=69.97 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=26.1
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.||+|+||.|++++++|..|.+ + .+++.|||.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 5899999999999999999999 5 9999999876
No 214
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.59 E-value=0.00078 Score=76.97 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=32.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||||++|+++|..|++ |++|+|+|+++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 35799999999999999999999 9999999998644
No 215
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.58 E-value=5.9e-05 Score=75.70 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
.+..||||||+|.+||++|++|.+ |++|+|||..+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 567899999999999999999999 9999999998744
No 216
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.58 E-value=4.5e-05 Score=80.76 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
..||+||||+|++|+.+|.+|++ |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 46999999999999999999999 9999999973
No 217
>PRK14727 putative mercuric reductase; Provisional
Probab=97.57 E-value=6.1e-05 Score=79.51 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...||+||||+|++|..+|.+|++ |.+|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 356999999999999999999999 99999999974
No 218
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.56 E-value=0.00073 Score=69.71 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|+|||||++|+++|+.|++ |++|+|+||.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999 99999999975
No 219
>PLN02268 probable polyamine oxidase
Probab=97.56 E-value=5.1e-05 Score=79.20 Aligned_cols=35 Identities=40% Similarity=0.593 Sum_probs=32.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
+|||||||.+|+++|++|.+ |++|+|||+.+..++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 79999999999999999998 899999999885544
No 220
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00036 Score=69.93 Aligned_cols=35 Identities=31% Similarity=0.615 Sum_probs=31.8
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+..|||||||+|-|||-+|..+|. |.+.++|-..-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 678999999999999999999999 99999997653
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=97.55 E-value=5.6e-05 Score=80.34 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=34.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFG 89 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~ 89 (523)
...+||||||||.+|+++|++|++ |.+|+|+|+.+..++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 456799999999999999999987 799999999875543
No 222
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.54 E-value=5.3e-05 Score=77.41 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=30.6
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+||+|||||++|+++|+.|++ |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999 99999999975
No 223
>PRK09897 hypothetical protein; Provisional
Probab=97.52 E-value=0.00042 Score=73.31 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.8
Q ss_pred ccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
.+|+|||+|++|+++|.+|++ + .+|+|+|++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 479999999999999999987 3 6999999976
No 224
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.48 E-value=0.00071 Score=68.22 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhhhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceee
Q 009873 181 SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAH 259 (523)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~ 259 (523)
.++.+.+.+.|++.... ..+..++......+..+.|. .+++.|++|+++++|++| +++ . .
T Consensus 57 ~d~~~fF~~~Gi~~~~e----------~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~------~-~ 117 (376)
T TIGR03862 57 VALQDWARGLGIETFVG----------SSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG------T-L 117 (376)
T ss_pred HHHHHHHHHCCCceEEC----------CCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC------c-E
Confidence 55778888999841110 01123333333333444443 778899999999999999 332 2 3
Q ss_pred EEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873 260 GIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL 302 (523)
Q Consensus 260 GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l 302 (523)
.|.+.. +. ..+.+ +.||||+|+...|.+
T Consensus 118 ~v~~~~--~~----~~~~a---------~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 118 RFETPD--GQ----STIEA---------DAVVLALGGASWSQL 145 (376)
T ss_pred EEEECC--Cc----eEEec---------CEEEEcCCCcccccc
Confidence 454422 22 23666 999999999877764
No 225
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.48 E-value=7e-05 Score=78.52 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~~~ 89 (523)
+|||||||++|+++|+.|++ | ++|+|+|+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 59999999999999999998 7 89999999875543
No 226
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.46 E-value=0.0001 Score=77.81 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=30.7
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
+||+||||+|++|..+|.+|++ |++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 6999999999999999999999 9999999985
No 227
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.45 E-value=8.1e-05 Score=76.58 Aligned_cols=33 Identities=42% Similarity=0.649 Sum_probs=30.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc----cCeeEEEecC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD----NFSVLLVERG 84 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G 84 (523)
..+||+|||||++|+++|+.|++ |.+|+|+||-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 35899999999999999999976 8999999995
No 228
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.44 E-value=0.0044 Score=63.49 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=44.1
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCc
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL 297 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~ 297 (523)
..+..||++..+++|++|.++..+. ...|+++++.. +|+ ..+|.. .+.+.|++.-|.+
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~~--~~~~~~i~~~~-~g~---~~~i~l------~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITGD--KKTATRIHIEQ-DGK---EETIDL------GPDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccCC--CeeEEEEEEEc-CCC---eeEEEe------CCCCEEEEECCcc
Confidence 5678999999999999999975432 23678888775 676 556654 4578899988875
No 229
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.42 E-value=0.00035 Score=70.05 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=40.6
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL 302 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l 302 (523)
..+.+.|++++++++|+.|..+++ ++.+|... +|. +.+ +.||+|+|++ ++.|
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~~~------~~~~v~~~--~g~------~~a---------~~vV~a~G~~-~~~l 196 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIRGE------KVTAIVTP--SGD------VQA---------DQVVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHcCCEEEccceEEEEEeeCC------EEEEEEcC--CCE------EEC---------CEEEEcCChh-hhhc
Confidence 366778999999999999998765 78888643 243 776 9999999985 5554
No 230
>PRK07233 hypothetical protein; Provisional
Probab=97.41 E-value=0.00011 Score=76.66 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=32.1
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
+|||||||++|+++|+.|++ |++|+|||+.+..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 58999999999999999998 999999999986654
No 231
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.41 E-value=0.00012 Score=76.55 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=27.8
Q ss_pred cccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~ 85 (523)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 69999999999998887654 399999999864
No 232
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.38 E-value=0.00014 Score=73.96 Aligned_cols=31 Identities=39% Similarity=0.723 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
||||||||++|+++|.+|++ |++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 89999999999999999986 79999999986
No 233
>PLN02568 polyamine oxidase
Probab=97.35 E-value=0.00015 Score=77.21 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=33.4
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-----CeeEEEecCCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-----FSVLLVERGGSPFG 89 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-----~~VlvlE~G~~~~~ 89 (523)
+..||||||||++|+++|.+|++ | ++|+|+|+....++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 45799999999999999999997 6 89999999986544
No 234
>PRK10262 thioredoxin reductase; Provisional
Probab=97.35 E-value=0.00013 Score=72.86 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.8
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+.+||||||+|++|+.+|..|++ |++|+++|+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 467999999999999999999998 99999999653
No 235
>PRK07846 mycothione reductase; Reviewed
Probab=97.33 E-value=0.00017 Score=75.46 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=28.3
Q ss_pred cccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~ 85 (523)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 48999999999999998774 399999999974
No 236
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.33 E-value=0.00017 Score=77.84 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=33.1
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+.++|+|||||++|+++|..|++ |++|+|+||..
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3567999999999999999999999 99999999974
No 237
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.30 E-value=0.00016 Score=76.21 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=31.9
Q ss_pred ccEEEECCCCchHHHHhhhhc-----cCeeEEEecCCCCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGGSPFG 89 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~~~~~ 89 (523)
.||||||||++|+++|++|++ |++|+|+|+.+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 589999999999999999986 689999999875543
No 238
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.30 E-value=0.00015 Score=66.81 Aligned_cols=31 Identities=32% Similarity=0.648 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
||||||||++|+.+|.+|++ +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999998 89999998875
No 239
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.21 E-value=0.0003 Score=76.57 Aligned_cols=36 Identities=36% Similarity=0.529 Sum_probs=32.9
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~ 85 (523)
+..++||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 3568999999999999999999998 79999999975
No 240
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.20 E-value=0.00022 Score=72.36 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-||+|||||.+|+.+|+.|++ |++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 489999999999999999999 99999999876
No 241
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00028 Score=72.18 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=31.7
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
|+|+|||.||+++|++|++ |++|.|+|+++..++
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 8999999999999999999 999999999986654
No 242
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.14 E-value=0.00032 Score=70.53 Aligned_cols=33 Identities=42% Similarity=0.662 Sum_probs=31.1
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+=+++|||+|.+|+.||+.|++ |.+|.|+||.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4469999999999999999999 99999999997
No 243
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.11 E-value=0.00031 Score=73.93 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=30.4
Q ss_pred cEEEECCCCchHHHHhhhhc-c------CeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N------FSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g------~~VlvlE~G~~~~~ 89 (523)
+|||||||++|+++|++|++ + .+|+|||+.+..++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 59999999999999999987 3 78999999875543
No 244
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.09 E-value=0.00034 Score=73.42 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
+|+|||+|++|+++|++|++ |++|+|+|+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999875443
No 245
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0019 Score=62.42 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=51.5
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS 306 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S 306 (523)
.+.-+|++|++|++-+.|.=+++ +|+|++|+++. |+ .+.+.. ..|.+--|-+-++.+|.-+
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gdg~------kV~Gl~Y~dr~sge---~~~l~L---------eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGDGD------KVTGLEYRDRVSGE---EHHLEL---------EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred HhcCCCcEEEecceeeEEecCCc------eecceEEEeccCCc---eeEEEe---------eeeEEEEecccChhHhhch
Confidence 45568999999999999987766 99999999865 66 788887 8899999988888888755
No 246
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.08 E-value=0.00045 Score=77.73 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.2
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
...||+|||||+||++||+.|++ |++|+|+|+.+..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 45799999999999999999999 99999999986443
No 247
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00051 Score=65.84 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=31.8
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+|||+|||+|.+|+++|++|++ |+++.+|-+|.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 6999999999999999999999 99999999996
No 248
>PRK12831 putative oxidoreductase; Provisional
Probab=97.00 E-value=0.00062 Score=71.44 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
....||+|||||++|+++|+.|++ |++|+|+|+....
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 456799999999999999999999 9999999997643
No 249
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.98 E-value=0.00057 Score=71.76 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
++||||+|++|.++|.+|++ |++|+||||+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 69999999999999999999 999999999863
No 250
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.95 E-value=0.00072 Score=67.10 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=31.3
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
+-+|||||||.+|+++|..|++ |.+|+|+|+-..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 3579999999999999999999 9999999996543
No 251
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00082 Score=64.54 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.3
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
...+||.||||+|.+|+++|.+++. |+||.+|+-=
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4578999999999999999999999 9999999865
No 252
>PLN02529 lysine-specific histone demethylase 1
Probab=96.86 E-value=0.0008 Score=73.60 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
....||+|||||++|+++|..|++ |++|+|+|+.+..+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 456899999999999999999999 99999999987443
No 253
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.86 E-value=0.026 Score=49.75 Aligned_cols=29 Identities=17% Similarity=0.458 Sum_probs=25.0
Q ss_pred EEECCCCchHHHHhhhhc------cCeeEEEecCC
Q 009873 57 IVVGGGTTGCPLAATLSD------NFSVLLVERGG 85 (523)
Q Consensus 57 IIVGsG~aG~~~A~~Lae------g~~VlvlE~G~ 85 (523)
.|||+|++|++++.+|.+ ..+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 489999999999999965 26899999964
No 254
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.85 E-value=0.00072 Score=69.12 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=30.0
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.||+|||||.+|+.+|+.|++ |.+|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 389999999999999999999 99999999875
No 255
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.82 E-value=0.0078 Score=61.61 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.8
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL 303 (523)
..+.+ |+++++++.|++|..+++ + ..|+. .+|. .+.+ +.||+|+|++ ++.++
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~~~------~-~~v~t--~~g~-----~~~a---------~~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERDGE------G-WQLLD--ANGE-----VIAA---------SVVVLANGAQ-AGQLA 194 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEcCC------e-EEEEe--CCCC-----EEEc---------CEEEEcCCcc-ccccc
Confidence 35667 999999999999987654 4 33433 2354 3566 9999999985 55544
No 256
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.79 E-value=0.0011 Score=73.07 Aligned_cols=39 Identities=31% Similarity=0.458 Sum_probs=34.3
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
....||||||||++|+++|+.|++ |++|+|+|+....++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 456799999999999999999999 999999999875543
No 257
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.78 E-value=0.001 Score=68.20 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=30.6
Q ss_pred EEEECCCCchHHHHhhhhc-c--CeeEEEecCCCCCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSPFG 89 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~~~ 89 (523)
++|||||.+|+++|++|.+ + ..|.|+|+++..++
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 8999999999999999999 6 89999999975543
No 258
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.77 E-value=0.0012 Score=69.12 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+||+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 356899999999999999999999 9999999997643
No 259
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.76 E-value=0.0012 Score=69.58 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
....||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 345799999999999999999999 9999999998644
No 260
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.70 E-value=0.0013 Score=66.32 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=31.3
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPF 88 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~ 88 (523)
+.-+||||||++|++||.+|-+ | .+|+|+|..+..+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 3469999999999999999997 5 8999999987544
No 261
>PLN02612 phytoene desaturase
Probab=96.69 E-value=0.0015 Score=70.37 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
....||+|||+|.+|+++|++|++ |++|+|+|+....
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 345799999999999999999999 9999999997644
No 262
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.68 E-value=0.0013 Score=69.32 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
+|+|||+|.+|+++|++|++ |++|+|+|+.+..++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 48999999999999999999 999999999875543
No 263
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.64 E-value=0.0018 Score=67.76 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSPF 88 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~~ 88 (523)
....|+|||||++|+.+|..|++ |++|.|+|+.+.++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 45679999999999999999984 79999999998554
No 264
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.63 E-value=0.0013 Score=67.43 Aligned_cols=41 Identities=34% Similarity=0.446 Sum_probs=31.2
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGN 90 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~ 90 (523)
++++|||||+|.|..-+.+|..|+. |+|||.||+.+..++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~ 42 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGE 42 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCc
Confidence 3679999999999999999999998 9999999999977653
No 265
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.62 E-value=0.0019 Score=49.93 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=29.3
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
++|||||..|+-+|..|++ |.+|.|||+.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 7999999999999999999 999999999973
No 266
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.59 E-value=0.0015 Score=67.81 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.|+|||||++|+++|+.|++ | .+|+|+||.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 58999999999999999998 7 6999999975
No 267
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.58 E-value=0.0018 Score=73.41 Aligned_cols=36 Identities=28% Similarity=0.200 Sum_probs=32.4
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||||+||+++|+.|++ |++|+|+|+.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 35689999999999999999999 9999999998644
No 268
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.56 E-value=0.0021 Score=67.50 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
....+|+|||||++|+.+|..|++ |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 345799999999999999999999 9999999998643
No 269
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.55 E-value=0.002 Score=72.01 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.3
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
....||+|||||++|+++|..|++ |++|+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346799999999999999999999 999999999653
No 270
>PLN02487 zeta-carotene desaturase
Probab=96.53 E-value=0.0025 Score=68.12 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
+..+|+|||+|++|+++|++|++ |++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 44699999999999999999998 99999999987554
No 271
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.53 E-value=0.0021 Score=72.26 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=32.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
..-+|+|||||++|+++|+.|++ |++|+|+|+.+..+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 45689999999999999999999 99999999987543
No 272
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.53 E-value=0.0023 Score=63.40 Aligned_cols=37 Identities=38% Similarity=0.696 Sum_probs=32.1
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG 85 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~ 85 (523)
...+.|||||||||+.|.+.|..|.. .+||+++|.+.
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 34558999999999999999999975 28999999995
No 273
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.53 E-value=0.002 Score=70.80 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=32.4
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||||++|+++|..|++ |++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45699999999999999999999 9999999998643
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.51 E-value=0.022 Score=58.28 Aligned_cols=31 Identities=39% Similarity=0.569 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 69999999999999999998 89999999986
No 275
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.50 E-value=0.015 Score=61.21 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=29.6
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 379999999999999999998 99999999985
No 276
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=96.43 E-value=0.0043 Score=63.56 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+..||.+|||+|.+|+-+|..|+| |.+|.++-+-.
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~ 88 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF 88 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence 345999999999999999999999 89999998764
No 277
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.38 E-value=0.038 Score=58.93 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=42.6
Q ss_pred CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL 304 (523)
Q Consensus 231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl 304 (523)
+.|+++++++.|+++.-+++ ++.+|++.+. .|+ ..++.+ +.||+|.|..-++.+|.
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~------~v~~v~~~~~~~~~---~~~i~~---------D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGD------KVTGIRYQDRNSGE---EKQLDL---------DGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcCCC------EEEEEEEEECCCCc---EEEEEc---------CEEEEEeCCcCCchHHh
Confidence 36899999999999976544 7888988763 244 456776 99999999876666654
No 278
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.38 E-value=0.036 Score=59.23 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=44.4
Q ss_pred CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
..|+++++++.++++..+++ ++++|++.+. +|+ ..++.+ +.|+++.|...++.+|..
T Consensus 399 ~~gI~i~~~~~v~~i~~~~g------~v~~v~~~~~~~g~---~~~i~~---------D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGDGD------KVTGLTYKDRTTGE---EHHLEL---------EGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCCcEEEECcEEEEEEcCCC------cEEEEEEEECCCCc---EEEEEc---------CEEEEeECCccCchHHhh
Confidence 46899999999999986544 8899988763 355 567777 999999998776676644
No 279
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.31 E-value=0.0035 Score=68.73 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=32.6
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45689999999999999999999 9999999998744
No 280
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.30 E-value=0.025 Score=59.57 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 58888888888888888887 88888888765
No 281
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.26 E-value=0.0036 Score=60.63 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=33.0
Q ss_pred cccEEEECCCCchHHHHhhhhccCeeEEEecCCCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFG 89 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~~~~ 89 (523)
.-++.|||||.+|+++|+.|+.-++|.|.|++...++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGG 44 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGG 44 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccC
Confidence 3479999999999999999999999999999985544
No 282
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.19 E-value=0.043 Score=56.47 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 59999999999999999998 99999999986
No 283
>PLN03000 amine oxidase
Probab=96.18 E-value=0.0042 Score=68.68 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
...||+|||||++|+.+|+.|++ |++|+|+|+.....+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 45799999999999999999998 999999999875543
No 284
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.12 E-value=0.04 Score=58.19 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|.+|+-+|..|++ |.+|.|+|+++
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 69999999999999999998 89999999986
No 285
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.12 E-value=0.0037 Score=69.79 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS 86 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~ 86 (523)
+|+|||||++|+++|+.|++ |++|+|+||...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999987 589999999874
No 286
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.10 E-value=0.0058 Score=61.84 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=31.8
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
..+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999998 8999999998754
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.08 E-value=0.03 Score=58.59 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=29.1
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 369999999999999999988 89999999875
No 288
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.08 E-value=0.0052 Score=64.60 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45789999999999999999998 9999999998643
No 289
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.01 E-value=0.035 Score=58.59 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999999888 89999999875
No 290
>PLN02976 amine oxidase
Probab=95.95 E-value=0.0061 Score=70.07 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
...+||+|||+|++|+.+|+.|++ |++|+|||+....+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 345899999999999999999999 89999999976443
No 291
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.94 E-value=0.024 Score=63.80 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCC
Q 009873 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIG 309 (523)
Q Consensus 231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig 309 (523)
+.|+++++++.|++|..++.+ .+..|.+. +|+ .+.+ +.||+|+|.--+..|+..+|+.
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~-----~~~~v~~~--dG~-----~i~~---------D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVE-----ARKTMRFA--DGS-----ELEV---------DFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCC-----ceEEEEEC--CCC-----EEEc---------CEEEECCCcccCchHHhhcCcc
Confidence 567889999999999754432 45556553 465 3666 9999999988777777777763
No 292
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.92 E-value=0.0056 Score=68.18 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=30.8
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
....|+|||+|+||+++|+.|+. |++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 44579999999999999999998 99999999864
No 293
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.92 E-value=0.047 Score=57.45 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=27.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 58999999999999998888 88999999875
No 294
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.85 E-value=0.047 Score=57.44 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.4
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 369999999999999999998 89999999985
No 295
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.85 E-value=0.0067 Score=64.10 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.4
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34699999999999999999999 99999999986
No 296
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.82 E-value=0.0077 Score=65.93 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=32.6
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
...+|+|||||++|+++|..|++ |++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 35689999999999999999999 9999999998754
No 297
>PRK06370 mercuric reductase; Validated
Probab=95.81 E-value=0.06 Score=56.65 Aligned_cols=31 Identities=29% Similarity=0.590 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 68999999999999999998 89999999886
No 298
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.78 E-value=0.011 Score=61.33 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=31.2
Q ss_pred ccEEEECCCCchHHHHhhhh-c-cCeeEEEecCCCCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLS-D-NFSVLLVERGGSPFG 89 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~La-e-g~~VlvlE~G~~~~~ 89 (523)
.-|.|||||++|+.+|.+|+ + |++|.|+||.+.+++
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 45999999999999999875 4 899999999986654
No 299
>PRK10262 thioredoxin reductase; Provisional
Probab=95.72 E-value=0.14 Score=51.01 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ +.+|.++++.+
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 69999999999999999999 89999999874
No 300
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.70 E-value=0.066 Score=56.05 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 59999999999999999998 99999999874
No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.70 E-value=0.031 Score=62.70 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=29.1
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 58999999999999999999 99999999875
No 302
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.67 E-value=0.01 Score=59.20 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=30.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSP 87 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~ 87 (523)
..-+|+|||+|.+|+++|+.|+. + ..|.|.|+++..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 35689999999999999999998 4 567889999744
No 303
>PRK14727 putative mercuric reductase; Provisional
Probab=95.66 E-value=0.065 Score=56.64 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=25.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 48888888888888888887 8888888864
No 304
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.64 E-value=0.0092 Score=64.44 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
.-+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999998 9999999997644
No 305
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.63 E-value=0.091 Score=55.21 Aligned_cols=31 Identities=35% Similarity=0.654 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 69999999999999999988 89999999885
No 306
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.61 E-value=0.074 Score=56.10 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 68999999999999999988 89999999886
No 307
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.51 E-value=0.21 Score=48.92 Aligned_cols=31 Identities=35% Similarity=0.428 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|..|+-+|..|++ +.+|.++++++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 79999999999999999998 89999999874
No 308
>PRK12831 putative oxidoreductase; Provisional
Probab=95.50 E-value=0.1 Score=54.91 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|..|+-+|..|+. |.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999988 88899999764
No 309
>PRK13984 putative oxidoreductase; Provisional
Probab=95.43 E-value=0.014 Score=63.61 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
....+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 456789999999999999999999 9999999998744
No 310
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.41 E-value=0.091 Score=53.38 Aligned_cols=33 Identities=42% Similarity=0.773 Sum_probs=28.1
Q ss_pred cccEEEECCCCchHHHHhhhhc--c------------CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD--N------------FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae--g------------~~VlvlE~G~ 85 (523)
.-+++|||||++|-=+|.+|++ . .+|.|+|+++
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p 201 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence 3579999999999999999976 1 2899999987
No 311
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.27 Score=50.47 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.0
Q ss_pred ccEEEECCCCchHHHHhhhhcc----CeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSDN----FSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Laeg----~~VlvlE~G~ 85 (523)
++|.|||+|++|.++|.+|.+. .+|.|+|+-.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 6899999999999999999871 3499999876
No 312
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.38 E-value=0.094 Score=55.18 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 58999999999999999998 89999999875
No 313
>PRK07846 mycothione reductase; Reviewed
Probab=95.30 E-value=0.11 Score=54.41 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=29.5
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 369999999999999999999 99999999985
No 314
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.29 E-value=0.17 Score=52.61 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=29.2
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++|||+|..|+-.|.-++. |.+|.|||+++
T Consensus 176 lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 9999999999999999999 99999999997
No 315
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.25 E-value=0.12 Score=53.67 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|..|+-+|..|++ |.+|.++++++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 69999999999999999998 89999999875
No 316
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.22 E-value=0.08 Score=55.47 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 59999999999999999998 99999999886
No 317
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.14 E-value=0.17 Score=53.34 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999998888 89999999875
No 318
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.09 E-value=0.017 Score=60.44 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=41.8
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
..++.|++++++++|++|.. ++ ++..+.. ++. ++.+ +.||+|+|...+..+|..+|
T Consensus 200 ~l~~~gI~v~~~~~v~~i~~-~~------~~~~v~~---~~~-----~i~~---------d~vi~a~G~~p~~~~l~~~g 255 (444)
T PRK09564 200 ELRENGVELHLNEFVKSLIG-ED------KVEGVVT---DKG-----EYEA---------DVVIVATGVKPNTEFLEDTG 255 (444)
T ss_pred HHHHCCCEEEcCCEEEEEec-CC------cEEEEEe---CCC-----EEEc---------CEEEECcCCCcCHHHHHhcC
Confidence 55678999999999999953 22 4555543 233 2666 99999999876677787777
Q ss_pred CC
Q 009873 308 IG 309 (523)
Q Consensus 308 ig 309 (523)
+.
T Consensus 256 l~ 257 (444)
T PRK09564 256 LK 257 (444)
T ss_pred cc
Confidence 63
No 319
>PRK06116 glutathione reductase; Validated
Probab=95.06 E-value=0.11 Score=54.43 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=27.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 58899999999999988888 88999998875
No 320
>PLN02507 glutathione reductase
Probab=95.00 E-value=0.14 Score=54.48 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=26.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 58888888888888888888 88888888775
No 321
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.93 E-value=0.019 Score=59.92 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS 86 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~ 86 (523)
.|||||+|++|+.+|.+|.+ +.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 59999999999999999986 489999999973
No 322
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.88 E-value=0.16 Score=53.54 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=26.5
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 58889999999888888888 88899998875
No 323
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.87 E-value=0.02 Score=58.99 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.4
Q ss_pred ccEEEECCCCchHHHHhhhhc-c--CeeEEEecCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGS 86 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~ 86 (523)
-+|||||+|++|+.+|..|++ + .+|+|+++...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 479999999999999999998 5 58999999863
No 324
>PRK13748 putative mercuric reductase; Provisional
Probab=94.77 E-value=0.12 Score=55.76 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=26.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.++|||+|..|+-+|..|++ |.+|.|||+.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 58999999999999999988 8999999875
No 325
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.031 Score=54.97 Aligned_cols=35 Identities=34% Similarity=0.459 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHhhhhc---cCeeEEEecCCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSPFG 89 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~~~ 89 (523)
-|+|||||+||..+|..|.+ +.+|-|+|+-+-+++
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 59999999999999999876 599999999986543
No 326
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.75 E-value=0.14 Score=53.41 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=24.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57888888888888888877 78888888764
No 327
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.74 E-value=0.027 Score=58.53 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
....+|||||+|.+|+.+|.+|.. +.+|+|||+.+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 345689999999999999999977 6899999988743
No 328
>PRK14694 putative mercuric reductase; Provisional
Probab=94.61 E-value=0.14 Score=53.98 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.++|||+|..|+-+|..|++ |.+|.|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 57888888888888888877 7888888764
No 329
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.027 Score=55.82 Aligned_cols=42 Identities=33% Similarity=0.481 Sum_probs=37.0
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPL 92 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~ 92 (523)
+++|||||+|.|..=|..+..|+- |.+||.++|.+..++...
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 456999999999999999999998 999999999997766544
No 330
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.34 E-value=0.2 Score=52.36 Aligned_cols=31 Identities=26% Similarity=0.496 Sum_probs=26.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 48888999999888888887 88899998875
No 331
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=0.051 Score=53.92 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=36.0
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
...+|||||||.|..=+++|...+. |.+||=|++..+.++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 3568999999999999999999999 999999999986654
No 332
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.07 E-value=0.36 Score=48.76 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+ |.|+|+..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999999999999999887 875 99999764
No 333
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.95 E-value=0.25 Score=52.24 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 48888888888888888888 8888888863
No 334
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.73 E-value=0.058 Score=56.07 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=31.9
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
-.|-|||||++|+.+|..|+. |++|++.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 579999999999999999999 99999999987553
No 335
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.075 Score=52.17 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=36.0
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPL 92 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~ 92 (523)
..|||||+|.|..=|+.+.+|+- |.+||.|+|.+..++...
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a 46 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA 46 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence 37999999999999999999997 999999999987665433
No 336
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.64 E-value=0.38 Score=50.83 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=24.8
Q ss_pred cEEEECCCCchHHHHhhh---hc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATL---SD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~L---ae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..+ .+ |.+|.|+|+++
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~ 223 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN 223 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 488999999998888644 34 78999999875
No 337
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.61 E-value=0.33 Score=51.02 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=27.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~ 85 (523)
.|+|||+|..|+-+|..|++ |. +|.++++..
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999999999999999988 76 899999864
No 338
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.60 E-value=0.056 Score=55.24 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=42.6
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
..++.|+++++++.|+++..+++ . ..|+.. +|+ ++.+ +.||+|+|.-.++.++..+|
T Consensus 192 ~l~~~gV~i~~~~~v~~i~~~~~------~-~~v~~~--~g~-----~i~~---------D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 192 RLTEMGVHLLLKSQLQGLEKTDS------G-IRATLD--SGR-----SIEV---------DAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHhCCCEEEECCeEEEEEccCC------E-EEEEEc--CCc-----EEEC---------CEEEECcCCCcchHHHHHCC
Confidence 55678999999999999976543 2 234432 454 4666 99999999876677777776
Q ss_pred CC
Q 009873 308 IG 309 (523)
Q Consensus 308 ig 309 (523)
+.
T Consensus 249 l~ 250 (377)
T PRK04965 249 LA 250 (377)
T ss_pred CC
Confidence 63
No 339
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.56 E-value=0.059 Score=52.08 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|.|||+|.+|+-+|+.+++ |.+|.|.|-.+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 38899999999999999999 99999999775
No 340
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.44 E-value=0.064 Score=54.46 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHhhhhc----cCeeEEEecCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD----NFSVLLVERGGSP 87 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~~ 87 (523)
.|||||+|++|+.+|.+|.+ +.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 38999999999999999953 5899999998743
No 341
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.65 E-value=0.1 Score=50.22 Aligned_cols=39 Identities=38% Similarity=0.484 Sum_probs=33.2
Q ss_pred ccCCcccEEEECCCCchHHHHhhhhc--c-CeeEEEecCCCC
Q 009873 49 VAGKSFDYIVVGGGTTGCPLAATLSD--N-FSVLLVERGGSP 87 (523)
Q Consensus 49 ~~~~~~DvIIVGsG~aG~~~A~~Lae--g-~~VlvlE~G~~~ 87 (523)
...++|.|+|||+|.+|+.+|.++.. + -+|.+||-....
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 45678999999999999999999987 4 689999976543
No 342
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.55 E-value=0.6 Score=49.63 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=26.1
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 58999999999999999888 8899999863
No 343
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.49 E-value=1.4 Score=51.09 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=44.2
Q ss_pred CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCC
Q 009873 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGI 308 (523)
Q Consensus 231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGi 308 (523)
+.|+++++++.|+++.-+ + ++.+|++...+|. ..++.+ +.|+++.|-.-+..|+...|.
T Consensus 363 ~~GV~i~~~~~v~~i~g~-~------~v~~V~l~~~~g~---~~~i~~---------D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 363 ELGIEVLTGHVVAATEGG-K------RVSGVAVARNGGA---GQRLEA---------DALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HcCCEEEcCCeEEEEecC-C------cEEEEEEEecCCc---eEEEEC---------CEEEEcCCcCchhHHHHhcCC
Confidence 457889999999998632 2 6788887643344 556776 999999998888888776664
No 344
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.19 E-value=0.71 Score=51.77 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~ 85 (523)
.|||||+|..|+-+|..|.. |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 59999999999999999988 865 99999864
No 345
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.17 E-value=0.99 Score=45.31 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=27.2
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
......|+|||||-+++-++..|.+ + .+|.++=|+.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 3455679999999999999999988 4 5899998886
No 346
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.66 E-value=0.15 Score=44.41 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+.|+|+|..|+..|.+|++ |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999998 89999999875
No 347
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.62 E-value=0.14 Score=52.56 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=32.0
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP 87 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~ 87 (523)
.-+++|||+|..|+.+|..|++ |++|.++|+.+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 3589999999999999999999 9999999999744
No 348
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.61 E-value=1.3 Score=46.71 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=27.5
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..+.+ | .+|.|+++.+
T Consensus 284 ~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 284 RVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 69999999999999999887 7 4799999875
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.58 E-value=0.97 Score=46.25 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=43.9
Q ss_pred CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL 305 (523)
Q Consensus 229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~ 305 (523)
.++.|++++.++.+..+..+.+| +++.|...+ |+ ++.+ +.||+..|+--...++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~G-----ev~~V~l~d--g~-----~l~a---------dlvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSDG-----EVSEVKLKD--GK-----TLEA---------DLVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccCCCC-----cEEEEEecc--CC-----Eecc---------CeEEEeeccccccccccc
Confidence 34678999999999999988765 888888776 55 4766 999999998655555554
No 350
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.57 E-value=0.18 Score=51.33 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSPF 88 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~~ 88 (523)
-+||||||.+|+.+|.+|.. . .+|+|||+.....
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 38999999999999999998 3 8899999998543
No 351
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.18 Score=47.42 Aligned_cols=31 Identities=32% Similarity=0.655 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|-.|..+|..|++ |..|+++|+-.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 48999999999999999999 89999999986
No 352
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.11 E-value=2.3 Score=48.76 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=28.1
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|||||+|..|+=+|..+.. |.+|.++++..
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 59999999999999999988 88999998764
No 353
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.42 E-value=1.9 Score=47.64 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=26.5
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.|+|||+|..|+-+|..+.+ | .+|.++++..
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 59999999999999988776 7 4799998864
No 354
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.26 Score=45.07 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=29.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.-.|+|||||+++-.+|+.+++ .+|-+|+|-+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~ 41 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM 41 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence 3469999999999999999999 79999999764
No 355
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=89.81 E-value=0.24 Score=46.44 Aligned_cols=30 Identities=37% Similarity=0.697 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD---NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~ 85 (523)
+||||+|++|-++|-.|+. ..+||+|-+.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 7999999999999999987 58999998876
No 356
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.74 E-value=0.74 Score=51.95 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=29.0
Q ss_pred hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe
Q 009873 226 LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK 265 (523)
Q Consensus 226 l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~ 265 (523)
+..|.+.|+++.+++.-.+|+.++++ ++++|++..
T Consensus 647 v~~A~eEGV~f~~~~~P~~i~~d~~g-----~v~~l~~~~ 681 (1028)
T PRK06567 647 LIYALALGVDFKENMQPLRINVDKYG-----HVESVEFEN 681 (1028)
T ss_pred HHHHHHcCcEEEecCCcEEEEecCCC-----eEEEEEEEE
Confidence 33567899999999999999987654 899998863
No 357
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.36 E-value=2.5 Score=46.53 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.|||||+|..|+-+|..|.+ | .+|.|+++..
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 59999999999999999887 7 4799999874
No 358
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.07 E-value=0.28 Score=43.20 Aligned_cols=30 Identities=40% Similarity=0.519 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|+|||..|.++|..|++ |.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899999999999999999 89999998864
No 359
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.88 E-value=0.35 Score=47.81 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|.|||+|+.|+..|..|++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 58999999999999999999 89999999974
No 360
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.79 E-value=0.34 Score=43.80 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=25.9
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|...|..++. |++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899999999999999988 99999999874
No 361
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=88.63 E-value=0.46 Score=53.21 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF 88 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~ 88 (523)
.-.-|-|||||++|+.+|..|-+ |+-|+|-||.+...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 34569999999999999999999 99999999987543
No 362
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.63 E-value=0.36 Score=50.41 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 59999999999999999998 99999999986
No 363
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.43 E-value=0.46 Score=43.10 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=24.5
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||.|..|+++|..||+ |++|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999 99999999875
No 364
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=88.08 E-value=0.37 Score=54.21 Aligned_cols=59 Identities=29% Similarity=0.380 Sum_probs=44.0
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
..++.|+++++++.|++|.-+ + ++.+|++. +|+ ++.+ +.||+|+|.--++.|+..+|
T Consensus 191 ~l~~~GV~v~~~~~v~~i~~~-~------~~~~v~~~--dG~-----~i~~---------D~Vi~a~G~~Pn~~la~~~g 247 (785)
T TIGR02374 191 ELEQKGLTFLLEKDTVEIVGA-T------KADRIRFK--DGS-----SLEA---------DLIVMAAGIRPNDELAVSAG 247 (785)
T ss_pred HHHHcCCEEEeCCceEEEEcC-C------ceEEEEEC--CCC-----EEEc---------CEEEECCCCCcCcHHHHhcC
Confidence 456789999999999998643 2 56777764 365 3666 99999999876677766676
Q ss_pred CC
Q 009873 308 IG 309 (523)
Q Consensus 308 ig 309 (523)
+.
T Consensus 248 l~ 249 (785)
T TIGR02374 248 IK 249 (785)
T ss_pred Cc
Confidence 53
No 365
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.95 E-value=0.45 Score=43.58 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=27.0
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-.|+|||+|.++.-+|..|++ +.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 459999999999999999999 89999998876
No 366
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.26 E-value=0.54 Score=46.66 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+.|||+|..|+..|..|++ |++|.++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 49999999999999999999 89999999874
No 367
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.22 E-value=0.78 Score=46.03 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=32.8
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG 85 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~ 85 (523)
+.+.+|+|.||-|+.-+.+|..|.+ +.+++.|||-+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 4567999999999999999999999 58999999987
No 368
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.03 E-value=0.52 Score=49.85 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 59999999999999999988 99999999765
No 369
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.10 E-value=0.59 Score=49.09 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=28.6
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
|.|||.|.+|+++|+.|++ |++|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 7999999999999999998 999999998763
No 370
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.10 E-value=0.6 Score=48.74 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 69999999999999999998 99999999986
No 371
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.08 E-value=0.57 Score=46.37 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|.|||+|..|+..|..|++ |++|.++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 48999999999999999998 89999999875
No 372
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=86.05 E-value=0.66 Score=52.46 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHhhhhc-----cCeeEEEecCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-----NFSVLLVERGGSP 87 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~~~ 87 (523)
.|||||+|++|+.+|.+|.+ +.+|+|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 69999999999999999864 3799999998754
No 373
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=85.54 E-value=0.75 Score=44.11 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=26.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-------CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-------FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-------~~VlvlE~G~ 85 (523)
..+++|||+|..|+++|..+.+ . .+|.|++--.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 4589999999999999977765 2 6788887554
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.42 E-value=0.69 Score=45.60 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=26.9
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVER 83 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~ 83 (523)
+.|||+|..|+..|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999 899999998
No 375
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=85.36 E-value=0.59 Score=48.05 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.6
Q ss_pred CchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873 63 TTGCPLAATLSD-NFSVLLVERGGSPFG 89 (523)
Q Consensus 63 ~aG~~~A~~Lae-g~~VlvlE~G~~~~~ 89 (523)
.+|++||++|++ |.+|+|+|+.+..++
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 379999999999 999999999985544
No 376
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.30 E-value=0.73 Score=45.33 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.3
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
+.|||+|..|+..|..|++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 7899999999999999999 8999999984
No 377
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=85.24 E-value=1.8 Score=45.38 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=39.9
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~ 298 (523)
.+++.|.+|++++.|++|..++++ +++||++.+..+++ .+++.+ +.||+|+..-.
T Consensus 222 ~l~~~g~~i~l~~~V~~I~~~~~~-----~v~~v~~~~~~~~~--~~~~~a---------~~VI~a~p~~~ 276 (453)
T TIGR02731 222 YITSRGGEVRLNSRLKEIVLNEDG-----SVKHFVLADGEGQR--RFEVTA---------DAYVSAMPVDI 276 (453)
T ss_pred HHHhcCCEEeCCCeeEEEEECCCC-----CEEEEEEecCCCCc--eeEEEC---------CEEEEcCCHHH
Confidence 444578999999999999876653 78999986533330 235665 99999997633
No 378
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.06 E-value=0.73 Score=48.32 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 69999999999999999998 99999999986
No 379
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=84.96 E-value=0.74 Score=48.37 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 69999999999999999998 99999999986
No 380
>PRK04148 hypothetical protein; Provisional
Probab=84.82 E-value=0.9 Score=38.59 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=27.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-+++||.| .|..+|..|++ |.+|+.+|..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 49999999 88888999999 99999999876
No 381
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=84.77 E-value=7.9 Score=38.79 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCC
Q 009873 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIG 309 (523)
Q Consensus 231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig 309 (523)
++|++++++++|.....++++ .+-|++.+. .++ ..++.+ +.+.+|.|= .| +..|+|
T Consensus 264 kQgikF~l~tkv~~a~~~~dg------~v~i~ve~ak~~k---~~tle~---------DvlLVsiGR--rP---~t~GLg 320 (506)
T KOG1335|consen 264 KQGIKFKLGTKVTSATRNGDG------PVEIEVENAKTGK---KETLEC---------DVLLVSIGR--RP---FTEGLG 320 (506)
T ss_pred hcCceeEeccEEEEeeccCCC------ceEEEEEecCCCc---eeEEEe---------eEEEEEccC--cc---cccCCC
Confidence 466778999999999988874 334555553 356 677887 999999993 34 235665
No 382
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.37 E-value=0.86 Score=38.97 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=27.7
Q ss_pred ccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~ 85 (523)
--++|||+|.+|-.+|..|++ |. +|.|+-|-.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 359999999999999999998 85 599998753
No 383
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.34 E-value=0.92 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.561 Sum_probs=26.7
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|||||.|..|..+|..|.+ +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999 56999999985
No 384
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=84.32 E-value=0.99 Score=38.51 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=28.4
Q ss_pred ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.-|+|||+|..|+.+|..|+. | .++.|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 348999999999999999999 8 5899999875
No 385
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.99 E-value=0.88 Score=47.66 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|..|+.+|..|++ |++|.++|+..
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 48999999999999999999 99999999864
No 386
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.98 E-value=0.75 Score=37.25 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=27.7
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
--|+|||+|..|..-+..|.+ |.+|.|+-..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 459999999999999999999 9999999876
No 387
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=83.94 E-value=0.92 Score=49.69 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 69999999999999999998 99999999986
No 388
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.60 E-value=0.98 Score=41.61 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=27.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
-++|||+|-.|...|..|.+ |.+|.|+++.
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 59999999999999999988 8999999753
No 389
>PTZ00058 glutathione reductase; Provisional
Probab=83.50 E-value=0.94 Score=48.73 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 59999999999999999998 99999999986
No 390
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.46 E-value=0.96 Score=48.77 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 59999999999999999998 89999999986
No 391
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.24 E-value=1 Score=44.10 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|.|||+|..|..+|..|++ |.+|.++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999999999999999998 89999999764
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=83.21 E-value=1.1 Score=39.49 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEe
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVE 82 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE 82 (523)
-++|||+|-.|.--|..|.+ |++|.||.
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 49999999999999999988 99999994
No 393
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.04 E-value=0.97 Score=44.23 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|...|..|++ |++|+++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 8899999999999999998 89999999875
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.55 E-value=1.2 Score=44.24 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|...|..++. |++|.+.|..+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999988 99999999864
No 395
>PLN02546 glutathione reductase
Probab=82.40 E-value=1.1 Score=48.19 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|||+|..|+-+|..|++ +.+|.|+|+++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 69999999999999999998 89999999986
No 396
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=82.21 E-value=1.1 Score=44.87 Aligned_cols=30 Identities=33% Similarity=0.606 Sum_probs=27.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
.|.|||+|..|+..|..|++ |++|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 38999999999999999999 8999999985
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.96 E-value=1.3 Score=42.66 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
..-|+|||.|..|+.+|..|+. | .++.|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4569999999999999999999 8 7999999764
No 398
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.95 E-value=1.3 Score=43.38 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|-|||+|..|...|..++. |++|+++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 38899999999999999998 99999999875
No 399
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.80 E-value=1.3 Score=44.39 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.+.|||+|..|++.|.-||+ |+.|+.+|.-.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 36899999999999999999 99999999875
No 400
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.40 E-value=1.3 Score=40.85 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=27.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
-|+|||+|..|..-|..|.+ |.+|.|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 59999999999999999998 9999999754
No 401
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.17 E-value=1.4 Score=40.51 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=29.1
Q ss_pred cccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~ 85 (523)
..-|+|||+|..|+.+|..|+. |. ++.++|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4569999999999999999999 85 799998773
No 402
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.94 E-value=1.3 Score=44.96 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=29.3
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..+++|||+|..|..+|..|.. |.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3469999999999999999988 99999999864
No 403
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.92 E-value=1.4 Score=37.90 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
|+|||.|..|+.+|..|+. | .++.+++...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 7899999999999999999 8 5899999775
No 404
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.59 E-value=1.7 Score=39.02 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=27.3
Q ss_pred EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
|+|||+|..|+.+|..|+. | .++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999999 8 4799999875
No 405
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=1.6 Score=41.96 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=28.6
Q ss_pred cCCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecC
Q 009873 50 AGKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERG 84 (523)
Q Consensus 50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G 84 (523)
...+| |||||+|..|+.+|.-|.. | .|+.+++=.
T Consensus 72 l~~sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 72 LTNSY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred hcCcE-EEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 34556 9999999999999999998 7 788888744
No 406
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=80.32 E-value=3.2 Score=43.76 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=43.3
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCC--CCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNN--GKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~--g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL 303 (523)
+..++.|.+|+++++|++|..+++ +. .++++|++.+.++. ..+.+ +.||+|+......+||
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~---~~v~~v~~~~g~~~----~~~~a---------D~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGS---TRVTGLIMSKPEGK----KVIKA---------DAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCc---eeEEEEEEecCCcc----eEEEC---------CEEEECCChHHHHhhC
Confidence 344568999999999999998752 21 03888887542221 23565 9999999988777765
No 407
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.02 E-value=1.7 Score=44.03 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+++|||+|..|.++|..|++ + .+|++.+|-.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 68999999999999999998 5 8999999974
No 408
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.91 E-value=1.5 Score=42.90 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|...|..|+. |.+|+++|+.+
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8899999999999999998 89999999864
No 409
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=79.67 E-value=1.6 Score=38.82 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=27.5
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.-|+|+|+|.+|..||.-|.. |.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 459999999999999999988 99999999864
No 410
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.48 E-value=1.9 Score=41.72 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
..-+|+|+|+|..|.-+|.-+.. |.+|.++|...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 45689999999999999998888 89999999985
No 411
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.36 E-value=1.6 Score=42.72 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|...|..|+. |.+|++.++..
T Consensus 7 I~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 7 VGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 8899999999999999998 89999999864
No 412
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.28 E-value=1.7 Score=39.96 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=28.1
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-++|+|.|-.|..+|.+|.+ |.+|++.++..
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 39999999999999999998 99999998653
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.93 E-value=1.7 Score=43.40 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+.|||+|..|+..|..|++ |.+|.++.|..
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 7899999999999999999 89999998853
No 414
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.78 E-value=1.7 Score=43.56 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=29.2
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||+|..|+.+|..|+. | .++.|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3459999999999999999999 8 4899999875
No 415
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=78.77 E-value=2.7 Score=41.75 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc-----cCeeEEEecCCCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-----NFSVLLVERGGSP 87 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~~~ 87 (523)
-+-|||+|.+|+++|.-|-+ |.++.+||.-+..
T Consensus 24 saY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~ 61 (587)
T COG4716 24 SAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLA 61 (587)
T ss_pred eeEEEccchHhhhheeEEEeccccCCceeEeeecCccc
Confidence 37789999999999999864 5899999987643
No 416
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=78.45 E-value=2 Score=43.08 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=29.5
Q ss_pred cccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~ 85 (523)
+.-|+|||+|..|+.+|..|+. |. ++.++|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4569999999999999999999 84 999999864
No 417
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=78.45 E-value=1.8 Score=42.17 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=28.1
Q ss_pred ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
-.|+|||+|.+|.++|..|++ | .+|.|+.|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 359999999999999999998 8 4899998864
No 418
>PRK08328 hypothetical protein; Provisional
Probab=78.23 E-value=1.8 Score=40.73 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||+|..|+.+|..|+. | .++.++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3469999999999999999999 8 6899997654
No 419
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=78.21 E-value=2.1 Score=40.67 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
....|+|||+|..|+.+|..|+. | .++.++|...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 34679999999999999999999 8 6899998775
No 420
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=78.18 E-value=2.1 Score=44.86 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|.+|+=+|..|++ +.+|.++.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 59999999999999999999 89999999875
No 421
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=77.97 E-value=1.9 Score=44.72 Aligned_cols=31 Identities=45% Similarity=0.820 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc---------------cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD---------------NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae---------------g~~VlvlE~G~ 85 (523)
.++|||+|..|.-+|..|++ +.+|.|+|+++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 69999999999999998874 57899999986
No 422
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=77.96 E-value=2 Score=39.60 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=29.8
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.+.-|+|||.|..|+.+|..|+. | .++.+++...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 34569999999999999999999 8 5899999875
No 423
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.72 E-value=2 Score=42.89 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|.|||+|..|...|..|++ |++|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 38999999999999999998 89999999853
No 424
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.65 E-value=2 Score=44.09 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|+|.|..|..+|..|.. |.+|+++|..+
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 59999999999999999987 99999999864
No 425
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.57 E-value=2.6 Score=37.47 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=28.2
Q ss_pred CcccEEEECCCC-chHHHHhhhhc-cCeeEEEecC
Q 009873 52 KSFDYIVVGGGT-TGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 52 ~~~DvIIVGsG~-aG~~~A~~Lae-g~~VlvlE~G 84 (523)
....++|||+|- +|..+|..|.+ |.+|.++.|-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 345799999996 69989999988 8899999986
No 426
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=77.43 E-value=1.9 Score=42.59 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+.|+|+|+.|+..|++|++ |..|+++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 7899999999999999999 88899998875
No 427
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=77.42 E-value=2.1 Score=42.18 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=26.4
Q ss_pred EEEECCCCchHHHHhhhhc-cC-eeEEEecC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NF-SVLLVERG 84 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G 84 (523)
|.|||+|..|+.+|..|+. |+ +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999988 65 89999983
No 428
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.42 E-value=1.9 Score=42.02 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|.|||+|..|+..|..|+. |++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 38999999999999999998 89999998764
No 429
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=77.23 E-value=2 Score=41.99 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=26.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~ 85 (523)
-++|+|+|.+|.++|..|++ |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 48999999999999999988 865 99998763
No 430
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=77.11 E-value=11 Score=38.19 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=44.7
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
..++.|+.++.|+.|..+..... -+...-.+|. ++.. +.||+|.|---+..|...||
T Consensus 402 kir~~GV~V~pna~v~sv~~~~~---------nl~lkL~dG~-----~l~t---------D~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 402 KIRKGGVDVRPNAKVESVRKCCK---------NLVLKLSDGS-----ELRT---------DLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred HHHhcCceeccchhhhhhhhhcc---------ceEEEecCCC-----eeee---------eeEEEEecCCCchhhccccc
Confidence 56789999999999999876554 2334444676 4665 99999999766778888887
Q ss_pred CCC
Q 009873 308 IGP 310 (523)
Q Consensus 308 ig~ 310 (523)
+.-
T Consensus 459 Lei 461 (659)
T KOG1346|consen 459 LEI 461 (659)
T ss_pred cee
Confidence 643
No 431
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=77.05 E-value=2.1 Score=40.31 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=29.0
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||.|..|+.+|..|+. | .++.|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4569999999999999999999 8 6899998764
No 432
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.89 E-value=2.2 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.1
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
..-|+|||+|..|+.+|..|+. | .++.++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4569999999999999999999 8 5799999864
No 433
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=76.61 E-value=2 Score=40.32 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc-cC---eeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NF---SVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~---~VlvlE~G~ 85 (523)
-++|+|+|.+|..+|..|.+ |. +|.|++|..
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 49999999999999999988 74 699999974
No 434
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=76.27 E-value=2.3 Score=45.67 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=30.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSP 87 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~ 87 (523)
..-|+|||+|.-|+.+|..|+. | .++.+++.+.-.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve 374 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVS 374 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEEC
Confidence 4559999999999999999999 8 689999988643
No 435
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=76.20 E-value=2.3 Score=40.47 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.9
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.+..|+|||.|..|+.+|..|+. | .++.|++...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 34679999999999999999999 8 6899998764
No 436
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=76.10 E-value=2.6 Score=39.91 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=28.4
Q ss_pred CCcccEEEECCCCchHHHHhhhhc-c-----------CeeEEEecCC
Q 009873 51 GKSFDYIVVGGGTTGCPLAATLSD-N-----------FSVLLVERGG 85 (523)
Q Consensus 51 ~~~~DvIIVGsG~aG~~~A~~Lae-g-----------~~VlvlE~G~ 85 (523)
.....|+|||+|..|+.+|..|+. | .++.|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 345789999999999999999986 4 2778887654
No 437
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=76.04 E-value=2.7 Score=43.48 Aligned_cols=30 Identities=40% Similarity=0.478 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||.|..|+..|..|++ |++|+++++..
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 7899999999999999998 89999999865
No 438
>PRK06153 hypothetical protein; Provisional
Probab=75.98 E-value=2.7 Score=42.37 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=29.6
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
..-|.|||.|..|+.+|..|++ | .++.|+|...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4579999999999999999999 8 6899999764
No 439
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.78 E-value=2.4 Score=41.97 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|.|||+|..|+..|..|+. |++|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 38899999999999999998 89999999754
No 440
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.42 E-value=2.9 Score=40.78 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHhhhhc-c-CeeEEEecCCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGGS 86 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~ 86 (523)
|+|||+|.-|+.+|..|+. | .++.+++.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 7999999999999999999 8 68999998763
No 441
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=75.20 E-value=3.3 Score=35.45 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.1
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGS 86 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~ 86 (523)
++|+|+|..+..+|.-++. |++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999988888 999999998753
No 442
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=75.08 E-value=2.7 Score=43.46 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||.|..|++.|..|++ |++|+++++..
T Consensus 6 I~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 8899999999999999999 99999999865
No 443
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=75.03 E-value=3.2 Score=43.37 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|.+|.-+|-+|++ +.+|.++=|.+
T Consensus 177 rV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred eEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 59999999999999999999 89999999987
No 444
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=75.01 E-value=2.6 Score=39.73 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.2
Q ss_pred EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
|+|||+|..|+.++..|+. | .++.|+|...
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999998 8 6899998764
No 445
>PLN02487 zeta-carotene desaturase
Probab=74.75 E-value=5.7 Score=42.84 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=44.3
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL 303 (523)
+..++.|.+|++++.|.+|..+.++.+ ..+++||++.+ +++ ...+.+ +.||+|++.....+||
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g-~~~v~gv~~~~-~~~---~~~~~a---------D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDG-ETYVTGLKVSK-ATE---KEIVKA---------DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCC-ceeEEEEEEec-CCC---ceEEEC---------CEEEECCCHHHHHHhC
Confidence 356788999999999999999853210 11589998852 233 334665 9999999987665554
No 446
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.72 E-value=2.7 Score=41.17 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|...|..|+. |.+|.+.|+..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8899999999999999998 89999999864
No 447
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=74.52 E-value=2.8 Score=40.81 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
-++|+|+|.++-++|+.|++ | .+|.|+.|..
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 48999999999999999998 7 5799998753
No 448
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=74.52 E-value=2.8 Score=41.65 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|.|||+|..|+..|..|++ |.+|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 89999999864
No 449
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.42 E-value=2.9 Score=41.31 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
.+.|||+|..|+++|+.|+. | ..|.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 48999999999999999988 7 5899999865
No 450
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=74.14 E-value=3.1 Score=38.15 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.2
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||.|..|+.+|..|+. | .++.+++...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4569999999999999999999 8 6799998764
No 451
>PRK08223 hypothetical protein; Validated
Probab=74.14 E-value=2.9 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=29.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.+.-|+|||.|.-|+.+|..|+. | .++.++|-..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34569999999999999999999 8 6899998765
No 452
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=74.08 E-value=3 Score=38.42 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=29.1
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
--|-|||+|..|+-+|.-.+. |+.|.|+++..
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 359999999999999999888 99999999875
No 453
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.72 E-value=2.6 Score=44.05 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=27.8
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++|+|+|..|.++|..|++ |.+|++.|+..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 8999999999999999998 99999999764
No 454
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=73.07 E-value=3.2 Score=42.48 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|+|||.|..|..+|..|.. |.+|+++|..+
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 59999999999999999988 99999999765
No 455
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=72.86 E-value=4.3 Score=37.94 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=30.6
Q ss_pred ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPF 88 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~ 88 (523)
.-|+|||-|..|+.++-.|+. | -++.||+.-....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 459999999999999999999 8 6899999876443
No 456
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=72.81 E-value=3 Score=40.69 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 59999999999999999988 99999999864
No 457
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=3.1 Score=40.91 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=29.8
Q ss_pred CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+--||.|||+|-+|.-+|+.||- -..|.|||=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 34589999999999999999998 57799999776
No 458
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=72.53 E-value=3.4 Score=40.78 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=27.1
Q ss_pred EEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
|.|||+|..|.++|+.|+. | ..|.++++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7899999999999999988 7 4899999865
No 459
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.42 E-value=3.2 Score=40.41 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=27.0
Q ss_pred EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
|+|||+|..|+.+|..|+. | .++.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 7999999999999999998 8 6899998764
No 460
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=72.41 E-value=3.4 Score=39.94 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.++|+|+|.++.++|+.|++ | .+|.|+.|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 59999999999999999998 7 5799998864
No 461
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.34 E-value=3.4 Score=42.25 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSDNFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Laeg~~VlvlE~G~ 85 (523)
|.|||.|..|+.+|..++.|++|+++|+..
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 789999999999998888799999999875
No 462
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=72.32 E-value=3.6 Score=37.67 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.8
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||+|.-|+.+|..|+. | .++.+++-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3459999999999999999999 8 6799998764
No 463
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.12 E-value=3.2 Score=40.91 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
|+|||+|..|+-+|..|+. | .++.|+|...
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 7999999999999999998 8 6899998775
No 464
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.97 E-value=3.2 Score=44.06 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|-|||+|..|...|..|+. |++|.|.|+..
T Consensus 8 V~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8999999999999999998 99999999875
No 465
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=71.92 E-value=3.5 Score=40.14 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.8
Q ss_pred ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
-.++|||+|.+|-++|..|++ | .+|.|+.|-.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 359999999999999999998 8 5799998753
No 466
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.83 E-value=3.2 Score=44.34 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG 84 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G 84 (523)
-++|+|+|.+|.++|+.|++ |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 48999999999999999998 8999999774
No 467
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.19 E-value=6.9 Score=42.26 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.3
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+-.+||+|.|..|-.+|.+|.+ |.+|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4579999999999999999998 89999999875
No 468
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.93 E-value=4 Score=38.07 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.8
Q ss_pred EEEEC-CCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVG-GGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVG-sG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
+.||| +|..|.++|..|++ |++|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 89999998764
No 469
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.90 E-value=3.6 Score=42.95 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=26.1
Q ss_pred cEEEECC-CCchHHHHhhhhc-cCeeEEEec
Q 009873 55 DYIVVGG-GTTGCPLAATLSD-NFSVLLVER 83 (523)
Q Consensus 55 DvIIVGs-G~aG~~~A~~Lae-g~~VlvlE~ 83 (523)
-|+|.|| |..|..++.+|++ |++|.++++
T Consensus 49 ~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 49 KVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 3899996 9999999999998 899999875
No 470
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.86 E-value=3.7 Score=45.68 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||+|..|.-+|..++. |++|.++|...
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 8999999999999999998 99999999875
No 471
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.51 E-value=3.7 Score=38.61 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=28.9
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||.|..|+.+|..|+. | .++.|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3459999999999999999999 8 6899998764
No 472
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.06 E-value=3.9 Score=45.43 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|.|||+|..|.-+|..++. |+.|.++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38999999999999999998 99999999875
No 473
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=70.04 E-value=4.4 Score=39.73 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=27.7
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|-|||||..|.-.|..++. |++|.+.|...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 7899999999999999998 79999999874
No 474
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=69.50 E-value=4.4 Score=39.20 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.9
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|+|+|..|..+|..|++ |.+|.++.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999998 88999998763
No 475
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.50 E-value=4.3 Score=41.41 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.6
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.+.-|+|||+|..|+.+|..|+. | .++.+++...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34569999999999999999999 8 5899999774
No 476
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=69.35 E-value=4.2 Score=41.91 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
-|+|||.|..|..+|..|.. |.+|++.|+.+
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 49999999999999999988 99999999865
No 477
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.31 E-value=3.9 Score=39.74 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|.|||.|..|.+.|..|++ |.+|+++++..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899999999999999988 89999998754
No 478
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=69.29 E-value=4.4 Score=42.58 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=27.6
Q ss_pred cEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
.+.|||+|..|+++|..||+ | .+|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 38999999999999999998 5 8899999765
No 479
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.28 E-value=11 Score=38.03 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=41.1
Q ss_pred CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCc-hhHHHH
Q 009873 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGAL-GSPQLL 303 (523)
Q Consensus 230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~-~tp~lL 303 (523)
.++++.++.++.|..+.-+++| + .-+.++.. .|+ ..++.. ++||||||-= ..|.+|
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~g-----~-~~l~~~~~~~~~---~~t~~~---------D~vIlATGY~~~~P~fL 346 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGDG-----R-YRLTLRHHETGE---LETVET---------DAVILATGYRRAVPSFL 346 (436)
T ss_pred CCCCeeeccccceeeeecCCCc-----e-EEEEEeeccCCC---ceEEEe---------eEEEEecccccCCchhh
Confidence 4789999999999999987764 5 44555543 355 667776 9999999975 345443
No 480
>PLN02612 phytoene desaturase
Probab=69.18 E-value=7.4 Score=42.10 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=36.0
Q ss_pred CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCC
Q 009873 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGA 296 (523)
Q Consensus 229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa 296 (523)
.++.|.+|++++.|++|..++++ ++++|++. +|+ .+.+ +.||+|+..
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g-----~v~~v~~~--~G~-----~~~a---------d~VI~a~p~ 364 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDG-----TVKHFLLT--NGS-----VVEG---------DVYVSATPV 364 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCC-----cEEEEEEC--CCc-----EEEC---------CEEEECCCH
Confidence 34579999999999999987654 67777764 365 3565 999998864
No 481
>PLN02494 adenosylhomocysteinase
Probab=69.16 E-value=4.6 Score=41.98 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.++|+|.|..|..+|.+|.. |.+|+++|+.+
T Consensus 256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 49999999999999999987 89999999875
No 482
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=69.16 E-value=4 Score=43.10 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=28.7
Q ss_pred cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.-.|+|+|+|++|+.++..+.. |.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3469999999999999888877 89999999875
No 483
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=68.92 E-value=4.1 Score=41.34 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=29.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||+|..|+.+|..|+. | .++.+++...
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4569999999999999999999 8 6899999775
No 484
>PRK08017 oxidoreductase; Provisional
Probab=68.70 E-value=5 Score=38.04 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=27.1
Q ss_pred EEEECC-CCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGG-GTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGs-G~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++|+|+ |..|..+|.+|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999988 89999998764
No 485
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=68.67 E-value=3.5 Score=36.23 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
++|+|=|..|..+|.+|.. |.+|.|.|..+
T Consensus 26 vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 26 VVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp EEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred EEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 9999999999999999988 99999999875
No 486
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=68.47 E-value=4.4 Score=43.09 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|-|||+|..|...|..|+. |+.|.|.|+..
T Consensus 10 V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999998 99999999875
No 487
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.36 E-value=4.8 Score=39.77 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|.|||+|..|..+|..|++ |++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999998 89999998864
No 488
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.23 E-value=4.3 Score=42.43 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
.|+|||+|..|..+|..|.+ |.+|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999998 89999999864
No 489
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.19 E-value=4.6 Score=40.81 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=29.4
Q ss_pred cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
+.-|+|||.|..|+.+|..|+. | .++.+++...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4569999999999999999999 8 6899999775
No 490
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=67.94 E-value=4.2 Score=40.01 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=26.5
Q ss_pred EEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NF-SVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~ 85 (523)
|.|||+|..|..+|..|+. ++ +|.++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4799999999999999987 65 999999874
No 491
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=67.72 E-value=4.8 Score=39.52 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=29.1
Q ss_pred ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
--++|||.|.+|..+|..|.. |.+|.+.++-.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 459999999999999999988 99999998874
No 492
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=67.01 E-value=4.7 Score=41.59 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=27.0
Q ss_pred EEEECCCCchHHHHhhhhc-cC------eeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NF------SVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~------~VlvlE~G~ 85 (523)
|+|||+|+.||-++..|+. |. ++.|+|...
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 7999999999999999988 76 899998765
No 493
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=66.93 E-value=14 Score=40.40 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=42.8
Q ss_pred hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873 228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG 307 (523)
Q Consensus 228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG 307 (523)
..++.|++++++..++.|.- .+ ++.+|+..+ |. .+.+ +-||.|+|---...+-..+|
T Consensus 196 ~le~~Gi~~~l~~~t~ei~g-~~------~~~~vr~~D--G~-----~i~a---------d~VV~a~GIrPn~ela~~aG 252 (793)
T COG1251 196 KLEDLGIKVLLEKNTEEIVG-ED------KVEGVRFAD--GT-----EIPA---------DLVVMAVGIRPNDELAKEAG 252 (793)
T ss_pred HHHhhcceeecccchhhhhc-Cc------ceeeEeecC--CC-----cccc---------eeEEEecccccccHhHHhcC
Confidence 34566777888877777765 33 788888765 65 2554 99999999877777777777
Q ss_pred CC
Q 009873 308 IG 309 (523)
Q Consensus 308 ig 309 (523)
+.
T Consensus 253 la 254 (793)
T COG1251 253 LA 254 (793)
T ss_pred cC
Confidence 64
No 494
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=66.92 E-value=6.1 Score=30.60 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=26.0
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEec
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVER 83 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~ 83 (523)
.++|+|+|..|..+|..|.+ + .+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 49999999999999999988 4 78999888
No 495
>PRK07233 hypothetical protein; Provisional
Probab=66.91 E-value=8.2 Score=39.91 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=39.7
Q ss_pred hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873 227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303 (523)
Q Consensus 227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL 303 (523)
..+++.|++|+++++|++|..+++ +++++.. +++ ++.+ +.||+|+..-..+.+|
T Consensus 206 ~~l~~~g~~v~~~~~V~~i~~~~~------~~~~~~~---~~~-----~~~a---------d~vI~a~p~~~~~~ll 259 (434)
T PRK07233 206 EAIEARGGEIRLGTPVTSVVIDGG------GVTGVEV---DGE-----EEDF---------DAVISTAPPPILARLV 259 (434)
T ss_pred HHHHhcCceEEeCCCeeEEEEcCC------ceEEEEe---CCc-----eEEC---------CEEEECCCHHHHHhhc
Confidence 355667899999999999998766 6666542 243 3666 9999999876666554
No 496
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=66.75 E-value=4.9 Score=39.03 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.++|+|+|.+|..+|..|++ | .+|.|+.|..
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 58999999999999999998 8 7999998864
No 497
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=66.32 E-value=5.9 Score=34.09 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.1
Q ss_pred cEEEECC-CCchHHHHhhhhc-c--CeeEEEecCC
Q 009873 55 DYIVVGG-GTTGCPLAATLSD-N--FSVLLVERGG 85 (523)
Q Consensus 55 DvIIVGs-G~aG~~~A~~Lae-g--~~VlvlE~G~ 85 (523)
-|.|||+ |..|..+|+.|.. + .++.|++...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 3789999 9999999999987 4 5799999874
No 498
>PRK06223 malate dehydrogenase; Reviewed
Probab=66.20 E-value=5.7 Score=39.20 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.2
Q ss_pred cEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873 55 DYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG 85 (523)
Q Consensus 55 DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~ 85 (523)
-|.|||+|..|..+|..++. +. .|.++|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 48999999999999999987 64 999999843
No 499
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=65.89 E-value=5.4 Score=42.35 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=27.8
Q ss_pred EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873 56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85 (523)
Q Consensus 56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~ 85 (523)
|-|||+|..|...|..|+. |++|.|.++.+
T Consensus 7 IavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 7 AACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999998 89999999864
No 500
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=65.87 E-value=5.2 Score=41.02 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=29.7
Q ss_pred CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873 52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG 85 (523)
Q Consensus 52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~ 85 (523)
.+.-|+|||.|..|+.+|..|+. | .++.|+|-..
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 35579999999999999999999 8 6899998764
Done!