Query 009877
Match_columns 523
No_of_seqs 210 out of 387
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 9.4E-15 3.2E-19 151.3 14.0 304 154-496 19-384 (408)
2 3zy2_A Putative GDP-fucose pro 99.1 1.6E-10 5.5E-15 119.1 10.5 275 155-489 6-347 (362)
3 2hhc_A NODZ, nodulation fucosy 97.4 0.0005 1.7E-08 68.6 10.4 40 156-195 3-42 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.4 0.0059 2E-07 66.1 18.1 250 157-487 145-418 (526)
5 1l2m_A REP protein; A+B fold, 20.4 92 0.0032 27.5 4.1 29 387-416 17-45 (118)
6 3l32_A Phosphoprotein; antipar 19.9 46 0.0016 24.9 1.7 21 300-320 2-22 (45)
7 2eqr_A N-COR1, N-COR, nuclear 19.2 81 0.0028 24.0 3.1 21 383-403 8-28 (61)
8 2ld4_A Anamorsin; methyltransf 16.5 1.1E+02 0.0036 26.4 3.6 94 298-415 70-167 (176)
9 2g7j_A Putative cytoplasmic pr 15.8 55 0.0019 29.0 1.5 19 390-408 3-21 (124)
10 1p3q_Q VPS9P, vacuolar protein 14.7 40 0.0014 26.1 0.3 37 422-463 14-50 (54)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.58 E-value=9.4e-15 Score=151.25 Aligned_cols=304 Identities=17% Similarity=0.269 Sum_probs=167.0
Q ss_pred CCCCcEEEEEec-C-chhHHHHHHHHHHHHHHHhcCe----EeccccccCccccCCC------CCCCCCChHHHHHHhcc
Q 009877 154 PKSNGFLIIEAN-G-GLNQQRLSICDAVAVAGLLNAT----LVIPIFHLNSVWRDSS------NFGDIFDEDFFMHALRS 221 (523)
Q Consensus 154 ~~snGYL~V~~n-G-GLNQqR~~IcdaVavAriLNAT----LVlP~l~~~s~W~D~S------~F~dIFD~dhFI~sL~~ 221 (523)
...++||+-..| | |.|.||...-.|.+.|+.||.| ||||-...---|+-.+ .|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 467899998864 5 8999999999999999999999 9999664333355432 59999999864 55
Q ss_pred cchhcccCchHHHhhhcccc-cceeecc--ccc-----C-----------------------CChhhHHhhhhhhhhhcc
Q 009877 222 NVNVVKELPEDILQQFDHNI-SSIVNLR--VKG-----W-----------------------SSPTHYLQKVLPKLQHLG 270 (523)
Q Consensus 222 dVrIVk~LP~~~~~~~~~~~-~~~~~~~--~~~-----~-----------------------s~~~yY~~~vlP~l~k~~ 270 (523)
.|+|+.. +++++..+... ..+.... ... | .++.|=...+ ......
T Consensus 95 ~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v--~~~~~~ 170 (408)
T 4ap5_A 95 NIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEET--RGLNVS 170 (408)
T ss_dssp TSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTC--EEEEEE
T ss_pred hCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCccccccc--ccCCce
Confidence 6677643 44443221110 0000000 000 0 0111100000 001111
Q ss_pred eEEEcCCcccccc----CCCCc---cccc-cceec----------ccccccchhHHHHHHHHHHHHhhcccCCCCceEEE
Q 009877 271 AVRIAPFSNRLAQ----GVPSN---IQGL-RCLAN----------FEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSV 332 (523)
Q Consensus 271 Vi~l~~f~~rLa~----~lP~d---iQrL-RCrvn----------f~ALrF~~~I~~lg~~lV~Rmr~~s~~~~g~yiAl 332 (523)
-+.+.+..+.+.. ..|.. +.+. .+.+. -..|+|.+.|.+.|++.++..-. ++|+++
T Consensus 171 c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~------~~~~~~ 244 (408)
T 4ap5_A 171 CLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLN------STDDAD 244 (408)
T ss_dssp EEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHC------CCTTTT
T ss_pred eEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhC------ccccee
Confidence 1222222222110 00100 0000 01111 13689999999999998887652 366677
Q ss_pred eecccchhhhhccccCCCChhHHHHHHHHHHhhhccccccCCcccCCcccccCC-CCCCCHHHHHHHHhhcCCCCCcEEE
Q 009877 333 HLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDG-KCPLTPLEVGMMLRGMGFDNTTSVY 411 (523)
Q Consensus 333 HLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~wk~k~~~~~~~i~~~~~R~~G-~CPLTPeEvgl~LralGf~~~T~IY 411 (523)
|+|.+.|+... |....... ...+..-+.|++ +-..... .||-.++-+..+.+.|-=.+-+.||
T Consensus 245 h~r~~~dw~~~--~~~~~~~~---------~~~y~~~H~Rr~-----d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~Vy 308 (408)
T 4ap5_A 245 RIPFQEDWMKM--KVKLGSAL---------GGPYLGVHLRRK-----DFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVF 308 (408)
T ss_dssp TCCCCSSGGGC--CCCTTCBC---------CEEEEEEEECCT-----TTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEE
T ss_pred ecccchhHhhh--hccccccc---------CCCccccccccc-----cchhhhhccCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77776666553 32211100 000111111111 0001111 2333222223333323222445899
Q ss_pred EeeccccCccccchhHHhhCCCccccccCCCHHHHhhhhccccchhhhheeeeeccceeeecCCCChhhhhhhhhhcccC
Q 009877 412 VAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYG 491 (523)
Q Consensus 412 lAsGeiyGg~~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAALDYiVcl~SDVFv~t~~GNfa~~V~GhR~y~~~ 491 (523)
||+-+ .+..+..|++.+|.++.-.. ..+++..+. ...+|.||-+||.+||+||+|..++|+..|.=.|-++
T Consensus 309 iATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~-- 379 (408)
T 4ap5_A 309 VATDA---VRKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL-- 379 (408)
T ss_dssp EEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHH--
T ss_pred EeCCC---chhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhc--
Confidence 99875 24457889999998764332 345666664 4567999999999999999999999999999999987
Q ss_pred Ccccc
Q 009877 492 GHAKT 496 (523)
Q Consensus 492 G~~kT 496 (523)
|+.+.
T Consensus 380 G~~~~ 384 (408)
T 4ap5_A 380 GLDPK 384 (408)
T ss_dssp TBCGG
T ss_pred CCCCC
Confidence 87643
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.12 E-value=1.6e-10 Score=119.07 Aligned_cols=275 Identities=19% Similarity=0.262 Sum_probs=156.8
Q ss_pred CCCcEEEEE-ecCchhHHHHHHHHHHHHHHHhcCeEeccccccCccccCCCC---CCCCCChHHHHHHhcccchhcccCc
Q 009877 155 KSNGFLIIE-ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN---FGDIFDEDFFMHALRSNVNVVKELP 230 (523)
Q Consensus 155 ~snGYL~V~-~nGGLNQqR~~IcdaVavAriLNATLVlP~l~~~s~W~D~S~---F~dIFD~dhFI~sL~~dVrIVk~LP 230 (523)
.+||||+-= |-|-..||-....-+.+.|+.||.|||||-+-.-.. +. +. |++-|+++. |+..-|||..
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~-~~~vpf~~yF~v~~----l~~yhrvi~m-- 77 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PE-TKMIPFEFLFQVGT----VAKYTRVVTM-- 77 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SS-CEEECHHHHBCHHH----HTTTSCEECH--
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Cc-ccccchhheeecch----hhhhceeeeH--
Confidence 479998875 999999999999999999999999999998753111 12 33 778888764 4444444422
Q ss_pred hHHHhh-------------hcc-------------cc----cce-------eecccc-c--CCC----hhh----HHhhh
Q 009877 231 EDILQQ-------------FDH-------------NI----SSI-------VNLRVK-G--WSS----PTH----YLQKV 262 (523)
Q Consensus 231 ~~~~~~-------------~~~-------------~~----~~~-------~~~~~~-~--~s~----~~y----Y~~~v 262 (523)
+++|+. |-. ++ .|+ .+++.. + +.+ ..| |.++=
T Consensus 78 e~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W 157 (362)
T 3zy2_A 78 QEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKW 157 (362)
T ss_dssp HHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CH
T ss_pred HHHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHH
Confidence 222110 000 00 000 000000 0 111 111 11111
Q ss_pred hhhh--hhcceEEEcCCccccccCCCC---ccccccceecccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeeccc
Q 009877 263 LPKL--QHLGAVRIAPFSNRLAQGVPS---NIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFE 337 (523)
Q Consensus 263 lP~l--~k~~Vi~l~~f~~rLa~~lP~---diQrLRCrvnf~ALrF~~~I~~lg~~lV~Rmr~~s~~~~g~yiAlHLRfE 337 (523)
...+ .+|=|+.+++--. ++.+.. .||| -|+++++|.+.|++.++.-- .++|||+|||--
T Consensus 158 ~~~~p~~~~pVlAf~gaPa--~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L------~rpyVgIHLR~G 221 (362)
T 3zy2_A 158 LEKFPSEEYPVLAFSSAPA--PFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL------AKPFVAVHLRND 221 (362)
T ss_dssp HHHSCTTTCSEEEESSCSS--CSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC------CSSEEEEEECCC
T ss_pred HHhCCcccCceEeecCCCC--CCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc------CCCeEEEEEecC
Confidence 1111 2445555543211 111111 3444 58999999999999888743 249999999999
Q ss_pred chhhhhccccCCCChh------HHHHHHHHHHhhhccccccCCcccCCcccccCCCCCCCHHH----HHHHHhhcCCCCC
Q 009877 338 TDMVAFSCCEYDGGEE------EKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLE----VGMMLRGMGFDNT 407 (523)
Q Consensus 338 ~DMlAfsgC~~~~~~~------E~~eL~~~R~~~wk~k~~~~~~~i~~~~~R~~G~CPLTPeE----vgl~LralGf~~~ 407 (523)
.|+.-. |.+--..+ .-.-+ .|... ++ . =-...|==+.++ +..+++.++ -
T Consensus 222 ~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy~~~---~~-~------lt~emClPSle~I~rqIk~~vk~~~---l 280 (362)
T 3zy2_A 222 ADWVRV--CEHIDTTTNRPLFASEQCL------GEGHH---LG-T------LTKEICSPSKQQILEQIVEKVGSIG---A 280 (362)
T ss_dssp HHHHHH--HHTCCTTTCCCCTTTHHHH------CGGGT---TC-C------CCHHHHSCCHHHHHHHHHHHHHHHT---C
T ss_pred CcHHHH--HhhhccccCcccccCCccc------CCccc---Cc-c------cchhccCCCHHHHHHHHHHHHHhcC---C
Confidence 899866 76521100 00000 01000 00 0 001124223333 444555555 4
Q ss_pred cEEEEeeccccCccccchhHHhhCCCccccccCCCHHHHhhhhccccchhhhheeeeeccceeeecCCCChhhhhhhhhh
Q 009877 408 TSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRR 487 (523)
Q Consensus 408 T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAALDYiVcl~SDVFv~t~~GNfa~~V~GhR~ 487 (523)
..||||+-. +..+.-|+++|+....+ +.+ + ..-.|+||.+||.+||+||+|..++|...|.=.|-
T Consensus 281 ksVFIATDa----~~~~~ELk~~L~~~~v~--vv~------~---~pe~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERd 345 (362)
T 3zy2_A 281 KSVFVASDK----DHMIDEINEALKPYEIE--AHR------Q---EPDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERD 345 (362)
T ss_dssp SEEEEEESS----CCCHHHHHHHHGGGTCC--EEC------C---SSCCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHH
T ss_pred cEEEEecCC----HHHHHHHHHHhhccCce--EEE------e---CCchhHHHHHHHHhCCEeecCccccccHHHHHHHH
Confidence 499999976 44578888888642100 100 0 01179999999999999999999999999999997
Q ss_pred cc
Q 009877 488 YL 489 (523)
Q Consensus 488 y~ 489 (523)
-+
T Consensus 346 i~ 347 (362)
T 3zy2_A 346 HA 347 (362)
T ss_dssp HS
T ss_pred hc
Confidence 55
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.45 E-value=0.0005 Score=68.64 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=35.8
Q ss_pred CCcEEEEEecCchhHHHHHHHHHHHHHHHhcCeEeccccc
Q 009877 156 SNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFH 195 (523)
Q Consensus 156 snGYL~V~~nGGLNQqR~~IcdaVavAriLNATLVlP~l~ 195 (523)
+..||++...|||.+|=-+++.|.++|...|.+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 4579999999999999999999999999999998876443
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.36 E-value=0.0059 Score=66.07 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=138.6
Q ss_pred CcEEEEEe--cCchhHHHHHHHHHHHHHHHhcCeEeccccccCccccC-CCCCCCCCChHHHHHHhcccchhcccCchHH
Q 009877 157 NGFLIIEA--NGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRD-SSNFGDIFDEDFFMHALRSNVNVVKELPEDI 233 (523)
Q Consensus 157 nGYL~V~~--nGGLNQqR~~IcdaVavAriLNATLVlP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~dVrIVk~LP~~~ 233 (523)
..||+... -.|+..+=..++-|..+|-.+|.|||+-.=. |.- ...|.++|+. +...+... |
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~--- 208 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------S--- 208 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------C---
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------C---
Confidence 47888876 4799999999999999999999999994432 432 2467777764 11111110 0
Q ss_pred HhhhcccccceeecccccCCChhhHHhhhhhhhhhcceEEEcCCcc--c---cc-cCCCCcc----cccc-------cee
Q 009877 234 LQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSN--R---LA-QGVPSNI----QGLR-------CLA 296 (523)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~yY~~~vlP~l~k~~Vi~l~~f~~--r---La-~~lP~di----QrLR-------Crv 296 (523)
......|..... -..+.||.+.-.++ + .. ..+|.++ +++. |..
T Consensus 209 ------------~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q 268 (526)
T 2de0_X 209 ------------GISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQ 268 (526)
T ss_dssp ------------CSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHH
T ss_pred ------------ccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHH
Confidence 001122322110 02344444322211 1 10 1234332 2222 011
Q ss_pred cc-cccccchhHHHHHHHHHHHHhhcccCCCCceEEEeecccchhhhhccccCCCChhHHHHHHHHHHhhhccccccCCc
Q 009877 297 NF-EALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGR 375 (523)
Q Consensus 297 nf-~ALrF~~~I~~lg~~lV~Rmr~~s~~~~g~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~wk~k~~~~~~ 375 (523)
.+ ..+|+.++|++.-+.+.+.+. -+++.|+||.|- -|-+.. .....+-+ +-+.... .|-.
T Consensus 269 ~~~yl~rP~~~i~~~I~~~~~~l~-----~~~piVGVHIRr-GDk~~~---E~~~~~~~-~Y~~~v~--~~~~------- 329 (526)
T 2de0_X 269 FVKYLIRPQPWLEKEIEEATKKLG-----FKHPVIGVHVRR-TDKVGT---EAAFHPIE-EYMVHVE--EHFQ------- 329 (526)
T ss_dssp HHHHHTCBCHHHHHHHHHHHHHHT-----CCSSEEEEEECC-C--------CCCSCSHH-HHHHHHH--HHHH-------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC-----CCCCEEEEEEeC-CCCCcc---ccccCCHH-HHHHHHH--HHHH-------
Confidence 11 247899999998888887764 257999999995 343221 11111111 1111111 1111
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCc--cccccCCCH-HHHhhhhcc
Q 009877 376 VIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRL--ETKDTLATP-EELAAFKGH 452 (523)
Q Consensus 376 ~i~~~~~R~~G~CPLTPeEvgl~LralGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl--~tKe~L~s~-eEL~pf~~~ 452 (523)
.|+.......+.||||+.+ ...++-+++.||+. ++-...... ..-..+...
T Consensus 330 ----------------------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~ 383 (526)
T 2de0_X 330 ----------------------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTEN 383 (526)
T ss_dssp ----------------------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCT
T ss_pred ----------------------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHH
Confidence 1222345778899999988 56678888889985 332222111 111111111
Q ss_pred ccchhhhheeeeeccceeeecCCCChhhhhhhhhh
Q 009877 453 SSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRR 487 (523)
Q Consensus 453 ss~lAALDYiVcl~SDVFv~t~~GNfa~~V~GhR~ 487 (523)
+-..+.+|..+..+||+||+|.++||++++...+.
T Consensus 384 ~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~ 418 (526)
T 2de0_X 384 SLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQ 418 (526)
T ss_dssp HHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhc
Confidence 11458899999999999999999999998877663
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=20.38 E-value=92 Score=27.47 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 009877 387 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGK 416 (523)
Q Consensus 387 ~CPLTPeEvgl~LralGf~~~T~IYlAsGe 416 (523)
.||||+||+...|+.+--+.+ ..||...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 699999999999999885543 56665554
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=19.90 E-value=46 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred ccccchhHHHHHHHHHHHHhh
Q 009877 300 ALRFSEPIRMLAEKMVDRMVK 320 (523)
Q Consensus 300 ALrF~~~I~~lg~~lV~Rmr~ 320 (523)
++-|+.-+.++|.++|.||+.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 345777889999999999995
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.19 E-value=81 Score=24.02 Aligned_cols=21 Identities=10% Similarity=-0.213 Sum_probs=17.7
Q ss_pred ccCCCCCCCHHHHHHHHhhcC
Q 009877 383 RVDGKCPLTPLEVGMMLRGMG 403 (523)
Q Consensus 383 R~~G~CPLTPeEvgl~LralG 403 (523)
.++...|.|+||..+|++++-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHH
Confidence 336778999999999999874
No 8
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=16.51 E-value=1.1e+02 Score=26.40 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=50.9
Q ss_pred ccccccc-hhHHHHHHHHHHHHhhcccCCCCceEEEeecccchhhhhccccCCCChhHHHHHHHHHHhhhccccccCCcc
Q 009877 298 FEALRFS-EPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRV 376 (523)
Q Consensus 298 f~ALrF~-~~I~~lg~~lV~Rmr~~s~~~~g~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~wk~k~~~~~~~ 376 (523)
..+|.+. ++..++-..+.+-|+ .+|.++-.|.-++.+. ...+....+|-. ...++..|
T Consensus 70 ~~~l~~~~~~~~~~l~~~~r~Lk-----pgG~l~~~~~~~~~~~----~~~~~~~~~~~~--~~l~~aGf---------- 128 (176)
T 2ld4_A 70 GLVPGSTTLHSAEILAEIARILR-----PGGCLFLKEPVETAVD----NNSKVKTASKLC--SALTLSGL---------- 128 (176)
T ss_dssp CCSTTCCCCCCHHHHHHHHHHEE-----EEEEEEEEEEEESSSC----SSSSSCCHHHHH--HHHHHTTC----------
T ss_pred CChhhhcccCHHHHHHHHHHHCC-----CCEEEEEEcccccccc----cccccCCHHHHH--HHHHHCCC----------
Confidence 3455554 666777777777776 4788887666443211 011211222211 11222223
Q ss_pred cCCcccccCCCCCCCHHHHHHHHhhcCCCCC---cEEEEeec
Q 009877 377 IRPGANRVDGKCPLTPLEVGMMLRGMGFDNT---TSVYVAAG 415 (523)
Q Consensus 377 i~~~~~R~~G~CPLTPeEvgl~LralGf~~~---T~IYlAsG 415 (523)
+. .+....-|++|+++..+....|+..+ ..+++|.-
T Consensus 129 i~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~K 167 (176)
T 2ld4_A 129 VE---VKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKK 167 (176)
T ss_dssp EE---EEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEEEEC
T ss_pred cE---eecCcccCCCHHHHHHHHHHhcccCCceEEEEEeccC
Confidence 11 11223458999999999999999866 44555543
No 9
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=15.79 E-value=55 Score=28.95 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.5
Q ss_pred CCHHHHHHHHhhcCCCCCc
Q 009877 390 LTPLEVGMMLRGMGFDNTT 408 (523)
Q Consensus 390 LTPeEvgl~LralGf~~~T 408 (523)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999997553
No 10
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=14.73 E-value=40 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=19.5
Q ss_pred ccchhHHhhCCCccccccCCCHHHHhhhhccccchhhhheee
Q 009877 422 KYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTV 463 (523)
Q Consensus 422 ~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAALDYiV 463 (523)
..+..|++|||++ ++|-+-. =|. .|....-+|||...
T Consensus 14 ~~~~~L~~MFP~l-D~evI~~--Vl~--a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIED--VCI--AAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHHH--HHH--HSCC--CGGGC---
T ss_pred HHHHHHHHHcccC-CHHHHHH--HHH--HcCCCHHHHHHHHH
Confidence 3578899999998 3333321 122 34456668888654
Done!