Query 009877
Match_columns 523
No_of_seqs 210 out of 387
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 14:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009877.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009877hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 51.1 1.5 0.00011 37.3 -0.0 36 188-223 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 27.6 26 0.0019 29.0 4.1 29 387-416 17-45 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 20.3 6 0.00044 27.9 -1.2 26 391-416 1-30 (44)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.4 27 0.0019 28.3 1.7 18 390-407 3-20 (112)
5 d1jjcb2 a.6.1.1 (B:400-474) Do 15.7 27 0.0019 26.1 1.5 22 383-405 14-35 (75)
6 d1wgla_ a.5.2.4 (A:) Toll-inte 14.3 19 0.0014 26.5 0.3 49 421-474 10-58 (59)
7 d1okga1 c.46.1.2 (A:7-162) 3-m 14.3 84 0.0061 26.3 4.6 29 385-413 66-95 (156)
8 d1y0ya1 b.49.3.1 (A:73-163) Fr 13.7 32 0.0024 26.5 1.5 16 155-170 8-23 (91)
9 d2fr5a1 c.97.1.1 (A:11-146) mo 13.5 52 0.0038 27.1 2.9 99 330-441 28-133 (136)
10 d1mn3a_ a.5.2.4 (A:) Vacuolar 13.2 22 0.0016 25.7 0.3 14 421-434 13-26 (54)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=51.13 E-value=1.5 Score=37.30 Aligned_cols=36 Identities=33% Similarity=0.606 Sum_probs=29.9
Q ss_pred eEeccccccCccccCCC----C-CCCCCChHHHHHHhcccc
Q 009877 188 TLVIPIFHLNSVWRDSS----N-FGDIFDEDFFMHALRSNV 223 (523)
Q Consensus 188 TLVlP~l~~~s~W~D~S----~-F~dIFD~dhFI~sL~~dV 223 (523)
-||+|...-+++|+++- . =+.|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 38999999999999962 2 389999999998887654
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=27.63 E-value=26 Score=28.98 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 009877 387 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGK 416 (523)
Q Consensus 387 ~CPLTPeEvgl~LralGf~~~T~IYlAsGe 416 (523)
+|||||||+...|+.|=-+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998665544 5666554
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.27 E-value=6 Score=27.87 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=18.3
Q ss_pred CHHHHHH--HHhhcCCCCCcE--EEEeecc
Q 009877 391 TPLEVGM--MLRGMGFDNTTS--VYVAAGK 416 (523)
Q Consensus 391 TPeEvgl--~LralGf~~~T~--IYlAsGe 416 (523)
||+|... =|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 4555433 378999999884 6777766
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.38 E-value=27 Score=28.34 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.9
Q ss_pred CCHHHHHHHHhhcCCCCC
Q 009877 390 LTPLEVGMMLRGMGFDNT 407 (523)
Q Consensus 390 LTPeEvgl~LralGf~~~ 407 (523)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999744
No 5
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.68 E-value=27 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.9
Q ss_pred ccCCCCCCCHHHHHHHHhhcCCC
Q 009877 383 RVDGKCPLTPLEVGMMLRGMGFD 405 (523)
Q Consensus 383 R~~G~CPLTPeEvgl~LralGf~ 405 (523)
+..|.. ++++|+..+|+.|||.
T Consensus 14 ~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 14 RLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHhCCC-CCHHHHHHHHHHcCCc
Confidence 445666 9999999999999996
No 6
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.31 E-value=19 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=30.8
Q ss_pred cccchhHHhhCCCccccccCCCHHHHhhhhccccchhhhheeeeeccceeeecC
Q 009877 421 EKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQ 474 (523)
Q Consensus 421 ~~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAALDYiVcl~SDVFv~t~ 474 (523)
+..+..|++|||++- ++.+- .=|. .+..+..+|+|=+.-..-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 566999999999984 22221 1122 2345567888877777766666654
No 7
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=14.26 E-value=84 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=22.7
Q ss_pred CCCCCC-CHHHHHHHHhhcCCCCCcEEEEe
Q 009877 385 DGKCPL-TPLEVGMMLRGMGFDNTTSVYVA 413 (523)
Q Consensus 385 ~G~CPL-TPeEvgl~LralGf~~~T~IYlA 413 (523)
.|.=|| ++++....|+.+|.+++|.|-|=
T Consensus 66 ~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 66 TARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 343334 78999999999999999977663
No 8
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.71 E-value=32 Score=26.47 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=13.3
Q ss_pred CCCcEEEEEecCchhH
Q 009877 155 KSNGFLIIEANGGLNQ 170 (523)
Q Consensus 155 ~snGYL~V~~nGGLNQ 170 (523)
..||||.|...||.+.
T Consensus 8 ~~~G~l~v~~vGG~~~ 23 (91)
T d1y0ya1 8 EKNGFLRVAPIGGVDP 23 (91)
T ss_dssp CTTSCEEEEEESSCCG
T ss_pred CCCCeEEEEecCCCCh
Confidence 4789999999999774
No 9
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.46 E-value=52 Score=27.09 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=54.6
Q ss_pred EEEeecccchhhhhccccCC------CChhHHHHHHHHHHhhhccccccCCcccCCcccccCCCCCCCHHHH-HHHHhhc
Q 009877 330 VSVHLRFETDMVAFSCCEYD------GGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV-GMMLRGM 402 (523)
Q Consensus 330 iAlHLRfE~DMlAfsgC~~~------~~~~E~~eL~~~R~~~wk~k~~~~~~~i~~~~~R~~G~CPLTPeEv-gl~Lral 402 (523)
|+-=++.+ |=-.|.||.-. +--+|+-.+.++-...=+ ++. .-..+...... +++|=-. --+|..
T Consensus 28 VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~-~~~~~~~~~~~-----~~~PCG~CRQ~l~E- 98 (136)
T d2fr5a1 28 VGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DFR-AIAISSDLQEE-----FISPCGACRQVMRE- 98 (136)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEE-EEEEEESCSSS-----CCCCCHHHHHHHHH-
T ss_pred EEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cEE-EEEeecccCCC-----CCCcchhhhHHHHh-
Confidence 66666665 55566666522 123688887766432111 110 00001111111 2333222 235555
Q ss_pred CCCCCcEEEEeeccccCccccchhHHhhCCCccccccCC
Q 009877 403 GFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLA 441 (523)
Q Consensus 403 Gf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L~ 441 (523)
|..++.||+...+ |+.....|+++.|.-+++++|-
T Consensus 99 -~~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 99 -FGTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp -TCSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred -hCCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 4578899998776 5666778999999999998874
No 10
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.18 E-value=22 Score=25.71 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.6
Q ss_pred cccchhHHhhCCCc
Q 009877 421 EKYVAPLRQMFPRL 434 (523)
Q Consensus 421 ~~~m~pL~~~FPnl 434 (523)
+..++.|++|||++
T Consensus 13 ~e~~~~Lk~MFP~~ 26 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 34588999999987
Done!