BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009878
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 257 bits (657), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 266/525 (50%), Gaps = 75/525 (14%)
Query: 29 EQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR 88
E AG FVLVAGGLGERLGY+ IKV+LP ET T T +L Y+ +
Sbjct: 105 ENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRW--------AQ 156
Query: 89 LAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAM 148
GK E+PF IMTSDDTH RT +LL ++ + +LKQ +V C D+ A LA+
Sbjct: 157 RVGGK--EVPFVIMTSDDTHDRTLQLLRELQ---LEVPNLHVLKQGQVFCFADSAAHLAL 211
Query: 149 DPKNKYRIQTKPHGHGDVHALLYSSG------------------LLKEWHDAGLKWVLFF 190
D K + KPHGHGDVH+L+Y++ L+ +W AG + ++F
Sbjct: 212 DETGK--LLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFI 269
Query: 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRS-MVINVEYN 249
QDTN IP SL +SA +N +PR KE IG + R G +V NVEYN
Sbjct: 270 QDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYN 329
Query: 250 QLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK 308
+ RA GD V+ TG+SPFPG++N L+ +L Y++ L+++ G + EF+NPKY
Sbjct: 330 VFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYS 389
Query: 309 DASKTSFKSSTRLECMMQDYPKTLPP-SAKVGFTVMDTWLAYAPVKNNPEDAAK-VPKGN 366
D ++ SFK R+E +MQD +VG TV + + +Y PVKN+ E+AA V +GN
Sbjct: 390 DETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERF-SYQPVKNSLEEAAGLVAQGN 448
Query: 367 PYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEI- 425
+ A +GE A Y L+ G +F + EV K +G+ I
Sbjct: 449 GAYCAATGEAAFYELQRRRLKAIGLP-------LFYSSQPEV---TVAKDAFGVRLFPII 498
Query: 426 ----KNKVSGS-------------CSVSQKSTMVIKGRNVVLEDLSLNGALII----DSV 464
SGS + Q ST++++GR V++E L L GAL I DS+
Sbjct: 499 VLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRGPTDSM 557
Query: 465 DDAEVRVGGKVQNKGWTLEPV----DHKDTSVPEEIRIRGFKINK 505
V V+N GW++ + +D+ + E RIRGF + K
Sbjct: 558 ALPHVVRNAVVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKK 602
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 257 bits (657), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 187/521 (35%), Positives = 266/521 (51%), Gaps = 67/521 (12%)
Query: 29 EQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR 88
E AG FVLVAGGLGERLGY+ IKV+LP ET T T +L Y+ +
Sbjct: 105 ENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRW--------AQ 156
Query: 89 LAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAM 148
GK E+PF IMTSDDTH RT +LL ++ + +LKQ +V C D+ A LA+
Sbjct: 157 RVGGK--EVPFVIMTSDDTHDRTLQLLRELQ---LEVPNLHVLKQGQVFCFADSAAHLAL 211
Query: 149 DPKNKYRIQTKPHGHGDVHALLYSSG------------------LLKEWHDAGLKWVLFF 190
D K + KPHGHGDVH+L+Y++ L+ +W AG + ++F
Sbjct: 212 DETGK--LLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFI 269
Query: 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRS-MVINVEYN 249
QDTN IP SL +SA +N +PR KE IG + R G +V NVEYN
Sbjct: 270 QDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYN 329
Query: 250 QLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK 308
+ RA GD V+ TG+SPFPG++N L+ +L Y++ L+++ G + EF+NPKY
Sbjct: 330 VFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYS 389
Query: 309 DASKTSFKSSTRLECMMQDYPKTLPP-SAKVGFTVMDTWLAYAPVKNNPEDAAK-VPKGN 366
D ++ SFK R+E +MQD +VG TV + + +Y PVKN+ E+AA V +GN
Sbjct: 390 DETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERF-SYQPVKNSLEEAAGLVAQGN 448
Query: 367 PYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQ-EVEVWPRLTWKPKWGLTFSEI 425
+ A +GE A Y L+ G + ++ Q EV V + + +
Sbjct: 449 GAYCAATGEAAFYELQRRRLKAIGLPL------FYSSQPEVTVAKDAFGVRLFPIIVLDT 502
Query: 426 KNKVSGS-------------CSVSQKSTMVIKGRNVVLEDLSLNGALII----DSVDDAE 468
SGS + Q ST++++GR V++E L L GAL I DS+
Sbjct: 503 VCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRGPTDSMALPH 561
Query: 469 VRVGGKVQNKGWTLEPV----DHKDTSVPEEIRIRGFKINK 505
V V+N GW++ + +D+ + E RIRGF + K
Sbjct: 562 VVRNAVVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKK 602
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 9/242 (3%)
Query: 14 TGEVLKFGDDTFINYEQAGVKEAKNA--AFVLVAGGLGERLGYNGIKVALPAETTTGTCF 71
T L D N+ + G+K N A +L+AGG G RLG + K E +
Sbjct: 77 TASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSL 136
Query: 72 LQNYIECILALQESSCR-LAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKL 130
Q E IL +++ + + L K I + IMTS T + T+ N+YFG+ QV
Sbjct: 137 FQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIF 196
Query: 131 LKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 190
Q + C + ++ ++ KN I P G+G ++ L +G+L + + G+K + +
Sbjct: 197 FNQGTLPCFNLQGNKILLELKN--SICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMY 254
Query: 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAV-PRKAKEAIGGITRLTHADGRSMVINVEYN 249
N L+ A P +G + K++ + + V R A E++G I L + + VI EY+
Sbjct: 255 CVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIV-LDQDNQKPCVI--EYS 311
Query: 250 QL 251
++
Sbjct: 312 EI 313
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 39 AAFVLVAGGLGERLGYNGIK----VALPAETTTGTCFLQNYIECILALQESSCRLAEGKC 94
A +L+AGG G RLG K V LP+ T Q E IL LQ+ + + KC
Sbjct: 103 VAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKT----LFQIQAERILKLQQVAEKYYGNKC 158
Query: 95 QEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKY 154
IP+ IMTS T T+E + YFG+K V +Q + + D ++ ++ KNK
Sbjct: 159 I-IPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAM-SFDGKIILEEKNK- 215
Query: 155 RIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK-AIPASLGVSATKQY 213
+ P G+G ++ L + ++++ G+ W + + +L K A P +G K
Sbjct: 216 -VSMAPDGNGGLYRALAAQNIVEDMEQRGI-WSIHVYCVDNILVKVADPRFIGFCIQKGA 273
Query: 214 HVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 251
+ V + E +G + R+ DG V VEY+++
Sbjct: 274 DCGAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSEI 307
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 40 AFVLVAGGLGERLGYNGIK----VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQ 95
A +L+AGG G RLG K V LP+ T Q E IL LQ+ + + KC
Sbjct: 104 AVLLLAGGQGTRLGVAYPKGMYDVGLPSRKT----LFQIQAERILKLQQVAEKYYGNKCI 159
Query: 96 EIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYR 155
IP+ IMTS T T+E + YFG+K V +Q + + D ++ ++ KNK
Sbjct: 160 -IPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAM-SFDGKIILEEKNK-- 215
Query: 156 IQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK-AIPASLGVSATKQYH 214
+ P G+G ++ L + ++++ G+ W + + +L K A P +G K
Sbjct: 216 VSMAPDGNGGLYRALAAQNIVEDMEQRGI-WSIHVYCVDNILVKVADPRFIGFCIQKGAD 274
Query: 215 VNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 251
+ V + E +G + R+ DG V VEY+++
Sbjct: 275 CGAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSEI 307
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 36/371 (9%)
Query: 39 AAFVLVAGGLGERLGYNGIK--VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQE 96
A + AGG G RLG+ K LP E Q E +L LQE + + K
Sbjct: 36 TALITPAGGQGSRLGFEHPKGMFVLPFEIPKSI--FQMTSERLLRLQELASEYSHQKNVM 93
Query: 97 IPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI 156
I + +MT+++T + + YFG+ Q+ Q + +D N ++ + K+K +
Sbjct: 94 IHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFN-GKILYEKKDKPYM 152
Query: 157 QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVN 216
P+GHG + L +G+L+ ++ G+K+ + N L P +G Q +
Sbjct: 153 --APNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEIC 210
Query: 217 SLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 276
V + KE G+ L R V VEY +L L +G+ G+ G
Sbjct: 211 IKIVKKGFKEEKVGV--LVKEQERIKV--VEYTELTDELNKQ-LSNGEFIYNCGHISING 265
Query: 277 NINQLILELG----PYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTL 332
+ + PY KK FVN + S + + E D
Sbjct: 266 YSTSFLEKAAEYQLPYHIAKKKV-----PFVNEQ-GIVIHPSENNGIKKEIFFFD---VF 316
Query: 333 PPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQ 392
P + KV + ++ ++ +KN+ ++ + + + + Y N L+KAGA
Sbjct: 317 PLATKVSIFEIQRFIEFSALKNSLNES--------FDNVNTVKRDWYRLNIYYLKKAGAI 368
Query: 393 VDD---PVQEV 400
VDD P+ E+
Sbjct: 369 VDDSKSPICEI 379
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 40 AFVLVAGGLGERLGYNGIK----VALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQ 95
A +L+AGG G RLG + K V LP+ T Q E IL LQ+ + + KC
Sbjct: 116 AVLLLAGGQGTRLGVSYPKGXYDVGLPSHKT----LFQIQAERILKLQQLAEKHHGNKCT 171
Query: 96 EIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYR 155
IP+ I TS T T+E + +FG+K V +Q + D ++ ++ KNK
Sbjct: 172 -IPWYIXTSGRTXESTKEFFTKHKFFGLKKENVVFFQQGXLPAX-SFDGKIILEEKNK-- 227
Query: 156 IQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHV 215
+ P G+G ++ L + ++++ G+ + + N L+ A P +G K
Sbjct: 228 VSXAPDGNGGLYRALAAQNIVEDXEQRGICSIHVYCVDNILVKVADPRFIGFCIQKGADC 287
Query: 216 NSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 251
+ V + E +G + R+ DG V VEY+++
Sbjct: 288 GAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSEI 319
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 37 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQE 96
+ A + + GGLG +G NG K L + G FL ALQ R C
Sbjct: 75 RQAVVLKLNGGLGTGMGLNGPKSLL--QVKNGQTFLD-----FTALQLEHFRQVR-NCN- 125
Query: 97 IPFAIMTSDDTHSRTQELLESN-SYFGMKPTQVKLLKQEKVACLDDN--DARLAMDPKNK 153
+PF +M S T T+ L + + + + ++L++ DN DP +
Sbjct: 126 VPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCE 185
Query: 154 YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194
+ P GHGDV+ +LYSSG L G +++ N
Sbjct: 186 W----VPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN 222
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 30/203 (14%)
Query: 2 ASHLLVIILQVPTGEVLKFGDDTFINYEQA-----GVKEAKNAAFVLVA----GGLGERL 52
A H+ +Q PT E++ + YE+ V E KN LV GGLG +
Sbjct: 41 AQHIEWSKIQTPTDEIV-------VPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTM 93
Query: 53 GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 112
G G K + E G FL ++ +Q + G C+ +P +M S +TH T
Sbjct: 94 GCTGPKSVI--EVRDGLTFLD-----LIVIQIENLNNKYG-CK-VPLVLMNSFNTHDDTH 144
Query: 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQT-KPHGHGDVHALLY 171
+++E + + K +V D + K K + P GHGDV L
Sbjct: 145 KIVEKYTNSNVDIHTFNQSKYPRVVA----DEFVPWPSKGKTDKEGWYPPGHGDVFPALM 200
Query: 172 SSGLLKEWHDAGLKWVLFFQDTN 194
+SG L + G ++V N
Sbjct: 201 NSGKLDTFLSQGKEYVFVANSDN 223
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 30/203 (14%)
Query: 2 ASHLLVIILQVPTGEVLKFGDDTFINYEQA-----GVKEAKNAAFVLVA----GGLGERL 52
A H+ +Q PT E++ + YE+ V E KN LV GGLG +
Sbjct: 41 AQHIEWSKIQTPTDEIV-------VPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTM 93
Query: 53 GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 112
G G K + E G FL ++ +Q + G C+ +P +M S +TH T
Sbjct: 94 GCTGPKSVI--EVRDGLTFLD-----LIVIQIENLNNKYG-CK-VPLVLMNSFNTHDDTH 144
Query: 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQT-KPHGHGDVHALLY 171
+++E + + K +V D + K K + P GHGDV L
Sbjct: 145 KIVEKYTNSNVDIHTFNQSKYPRVVA----DEFVPWPSKGKTDKEGWYPPGHGDVFPALM 200
Query: 172 SSGLLKEWHDAGLKWVLFFQDTN 194
+SG L + G ++V N
Sbjct: 201 NSGKLDTFLSQGKEYVFVANSDN 223
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 118/298 (39%), Gaps = 32/298 (10%)
Query: 42 VLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAI 101
V + GGLG +G G K + FL ++ I L ++ ++P +
Sbjct: 131 VKLNGGLGTSMGCKGPKSLIGVRNEN--TFLDLTVQQIEHLNKTYN-------TDVPLVL 181
Query: 102 MTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTK-- 159
M S +T T+++L+ ++ +K + Q + ++ ++ L + Y +
Sbjct: 182 MNSFNTDEDTKKILQKYNHCRVK---IYTFNQSRYPRIN-KESLLPVAKDVSYSGENTEA 237
Query: 160 --PHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNS 217
P GHGD++A Y+SGLL + G +++ F + +LG + Y +N
Sbjct: 238 WYPPGHGDIYASFYNSGLLDTFIGEGKEYI----------FVSNIDNLG-ATVDLYILNH 286
Query: 218 LAVPRKAK--EAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275
L P K E + +T T AD + + +Y L+ P V+ S F
Sbjct: 287 LMNPPNGKRCEFVMEVTNKTRADVKGGTL-TQYEGKLRLVEIAQVPKAHVDEFKSVSKFK 345
Query: 276 -GNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTL 332
N N L + L ++ ++ VN K D + T + ++ + +L
Sbjct: 346 IFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSL 403
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 94 CQE-IPFAIMTSDDTHSRTQELLESNS--YFGMKPTQVKLLKQEKVACLDDN--DARLAM 148
C E + F + S +T + T+ L++ + + ++V+L + + L D A A
Sbjct: 121 CSEHLRFXLXDSFNTSASTKSFLKARYPWLYQVFDSEVELXQNQVPKILQDTLEPAAWAE 180
Query: 149 DPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKW 186
+P ++ P GHGD++ LY SG L+E + G ++
Sbjct: 181 NPAYEW----APPGHGDIYTALYGSGKLQELVEQGYRY 214
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 147 AMDPKNKYRIQTKPHGHGDVH--AL-LYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 199
A+ P R+++ P G +V AL + GL +EW +A LK +L FQD G L++
Sbjct: 505 ALLPLKVVRVESLPPGLLEVAEGALGRFPLGLWREWVEAPLKPLLTFQDGKGALYR 560
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 22 DDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYN--GIKVALPA 63
DD I E ++ K VL G LGE G N G+ +ALPA
Sbjct: 126 DDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPA 169
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
Length = 470
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 22 DDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYN--GIKVALPA 63
DD I E ++ K VL G LGE G N G+ +ALPA
Sbjct: 126 DDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPA 169
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 22 DDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYN--GIKVALPA 63
DD I E ++ K VL G LGE G N G+ +ALPA
Sbjct: 126 DDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPA 169
>pdb|1Y3H|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
pdb|1Y3H|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
Length = 307
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 447 NVVLEDLSLNGALIIDSVDDAEVRVGGKVQNKGWTLEPV 485
+VV +D + L +D V VR GG++ N+GW L V
Sbjct: 127 HVVAQDYRVEDRLTLDVV----VRQGGRIVNRGWALNEV 161
>pdb|1U0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1Y3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
pdb|1Y3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
Length = 307
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 447 NVVLEDLSLNGALIIDSVDDAEVRVGGKVQNKGWTLEPV 485
+VV +D + L +D V VR GG++ N+GW L V
Sbjct: 127 HVVAQDYRVEDRLTLDVV----VRQGGRIVNRGWALNEV 161
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 16 EVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNY 75
EV+K+ I+ + V A + + GGLG +G G K + E G FL
Sbjct: 73 EVVKY---EIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVI--EVREGNTFLDLS 127
Query: 76 IECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEK 135
+ I L ++P +M S +T T+ L++ + +++ Q +
Sbjct: 128 VRQIEYLNRQYD-------SDVPLLLMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSR 177
Query: 136 VACLDDNDARLAMDPKNKYRIQT-KPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194
+ D+ L + + + P GHGD+ L+ SG L G + +LF + +
Sbjct: 178 FPRVY-KDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQG-REILFVSNGD 235
Query: 195 GL 196
L
Sbjct: 236 NL 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,425,568
Number of Sequences: 62578
Number of extensions: 707144
Number of successful extensions: 1493
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1455
Number of HSP's gapped (non-prelim): 27
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)