Query 009878
Match_columns 523
No_of_seqs 250 out of 734
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 18:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 9E-130 2E-134 1067.4 48.4 517 5-522 95-615 (615)
2 PLN02474 UTP--glucose-1-phosph 100.0 5.9E-90 1.3E-94 731.8 34.2 388 32-481 73-464 (469)
3 cd06424 UGGPase UGGPase cataly 100.0 8E-90 1.7E-94 701.0 28.3 315 39-356 1-315 (315)
4 PLN02435 probable UDP-N-acetyl 100.0 6E-85 1.3E-89 697.1 33.2 387 6-425 80-479 (493)
5 KOG2638 UDP-glucose pyrophosph 100.0 1.5E-84 3.4E-89 661.3 24.9 392 30-481 95-490 (498)
6 PF01704 UDPGP: UTP--glucose-1 100.0 1.3E-81 2.7E-86 665.9 26.0 368 31-456 49-420 (420)
7 PTZ00339 UDP-N-acetylglucosami 100.0 5E-80 1.1E-84 660.9 32.9 376 22-428 88-473 (482)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 5.9E-75 1.3E-79 598.4 27.3 312 27-356 2-323 (323)
9 cd00897 UGPase_euk Eukaryotic 100.0 3E-74 6.5E-79 584.8 25.2 289 36-359 1-291 (300)
10 KOG2388 UDP-N-acetylglucosamin 100.0 1.5E-70 3.3E-75 572.6 20.5 386 9-430 63-462 (477)
11 COG4284 UDP-glucose pyrophosph 100.0 2.2E-64 4.7E-69 527.8 28.2 383 5-479 71-468 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 1.1E-62 2.4E-67 495.5 26.1 264 39-354 1-266 (266)
13 COG1207 GlmU N-acetylglucosami 98.9 3.8E-07 8.2E-12 96.1 22.0 274 38-416 2-279 (460)
14 PRK05293 glgC glucose-1-phosph 98.7 3.2E-07 6.9E-12 97.0 17.1 198 37-293 2-205 (380)
15 PRK00844 glgC glucose-1-phosph 98.7 3.8E-07 8.3E-12 97.6 16.7 206 35-294 2-213 (407)
16 TIGR02092 glgD glucose-1-phosp 98.7 2.9E-07 6.4E-12 96.9 15.5 157 38-234 2-165 (369)
17 PRK14356 glmU bifunctional N-a 98.7 3.5E-06 7.5E-11 91.2 23.8 183 38-293 5-189 (456)
18 PRK15480 glucose-1-phosphate t 98.6 8.4E-07 1.8E-11 91.2 16.3 150 38-240 3-156 (292)
19 PRK14359 glmU bifunctional N-a 98.6 1.2E-05 2.5E-10 86.3 24.1 179 38-293 2-180 (430)
20 PRK00725 glgC glucose-1-phosph 98.6 1.7E-06 3.8E-11 93.2 17.3 207 36-294 13-225 (425)
21 TIGR01207 rmlA glucose-1-phosp 98.5 1.9E-06 4.1E-11 88.3 15.7 147 41-240 2-152 (286)
22 cd04197 eIF-2B_epsilon_N The N 98.5 1.8E-06 4E-11 84.2 14.2 135 40-221 2-145 (217)
23 cd06425 M1P_guanylylT_B_like_N 98.5 3.2E-06 7E-11 83.1 15.4 177 40-288 2-183 (233)
24 PLN02241 glucose-1-phosphate a 98.5 2.3E-06 5E-11 92.5 15.6 219 37-294 2-232 (436)
25 PF00483 NTP_transferase: Nucl 98.5 7.1E-07 1.5E-11 88.0 10.7 183 41-293 2-192 (248)
26 PRK02862 glgC glucose-1-phosph 98.5 3.4E-06 7.4E-11 91.1 16.4 214 38-294 3-226 (429)
27 COG1208 GCD1 Nucleoside-diphos 98.5 1.2E-06 2.6E-11 92.5 12.6 142 39-233 2-147 (358)
28 cd04181 NTP_transferase NTP_tr 98.5 3.8E-06 8.3E-11 80.8 14.9 177 41-293 1-181 (217)
29 TIGR01105 galF UTP-glucose-1-p 98.4 1.9E-06 4.2E-11 88.7 12.7 64 38-117 3-69 (297)
30 cd02538 G1P_TT_short G1P_TT_sh 98.4 4.6E-06 1E-10 82.4 14.9 148 40-240 2-153 (240)
31 TIGR02623 G1P_cyt_trans glucos 98.4 7.3E-06 1.6E-10 82.2 15.8 159 41-232 2-163 (254)
32 cd02508 ADP_Glucose_PP ADP-glu 98.4 3E-06 6.6E-11 81.5 12.4 139 41-220 1-146 (200)
33 cd06422 NTP_transferase_like_1 98.4 6.2E-06 1.4E-10 80.3 14.7 140 41-232 2-146 (221)
34 PRK14352 glmU bifunctional N-a 98.4 1.6E-05 3.4E-10 87.0 19.0 189 37-294 3-192 (482)
35 cd06915 NTP_transferase_WcbM_l 98.4 6.7E-06 1.5E-10 79.3 13.8 175 41-289 1-178 (223)
36 cd02524 G1P_cytidylyltransfera 98.4 6.1E-06 1.3E-10 82.4 13.5 160 41-241 1-170 (253)
37 cd04189 G1P_TT_long G1P_TT_lon 98.3 1.4E-05 3E-10 78.4 15.5 141 39-232 1-145 (236)
38 TIGR01173 glmU UDP-N-acetylglu 98.3 5.1E-05 1.1E-09 81.7 21.1 62 40-117 2-63 (451)
39 cd06428 M1P_guanylylT_A_like_N 98.3 1.6E-05 3.4E-10 79.6 15.1 179 41-288 1-187 (257)
40 cd02540 GT2_GlmU_N_bac N-termi 98.3 4.2E-05 9.1E-10 74.5 17.7 182 41-294 1-183 (229)
41 cd06426 NTP_transferase_like_2 98.3 6.7E-06 1.5E-10 79.7 12.0 140 41-234 1-143 (220)
42 PRK14358 glmU bifunctional N-a 98.3 2.3E-05 4.9E-10 85.9 17.4 149 37-241 6-155 (481)
43 cd02509 GDP-M1P_Guanylyltransf 98.2 2.9E-05 6.2E-10 79.0 15.1 198 40-295 2-209 (274)
44 PRK14360 glmU bifunctional N-a 98.2 6.2E-05 1.3E-09 81.3 18.4 185 39-294 2-187 (450)
45 PRK14357 glmU bifunctional N-a 98.2 3.4E-05 7.4E-10 83.3 16.3 177 40-293 2-179 (448)
46 PRK14353 glmU bifunctional N-a 98.2 6.3E-05 1.4E-09 81.2 18.3 184 38-294 5-190 (446)
47 PRK14355 glmU bifunctional N-a 98.2 3.8E-05 8.2E-10 83.4 16.6 184 38-293 3-188 (459)
48 PRK10122 GalU regulator GalF; 98.2 1.3E-05 2.9E-10 82.5 11.9 64 37-116 2-68 (297)
49 TIGR02091 glgC glucose-1-phosp 98.2 3.2E-05 6.9E-10 81.1 14.8 198 41-294 1-207 (361)
50 TIGR01208 rmlA_long glucose-1- 98.2 6.2E-05 1.4E-09 78.8 16.3 139 41-231 2-144 (353)
51 KOG1460 GDP-mannose pyrophosph 98.1 0.00043 9.4E-09 70.3 20.4 180 39-288 3-191 (407)
52 COG1209 RfbA dTDP-glucose pyro 98.1 5.7E-05 1.2E-09 76.0 12.9 146 41-240 3-152 (286)
53 cd02523 PC_cytidylyltransferas 98.0 0.00013 2.7E-09 71.5 14.7 123 41-221 1-126 (229)
54 PRK14354 glmU bifunctional N-a 98.0 0.00028 6E-09 76.4 18.0 184 38-294 2-186 (458)
55 TIGR01099 galU UTP-glucose-1-p 98.0 4.7E-05 1E-09 76.0 11.2 61 40-117 2-66 (260)
56 PRK05450 3-deoxy-manno-octulos 98.0 0.00031 6.8E-09 69.4 16.8 187 38-293 2-194 (245)
57 KOG1322 GDP-mannose pyrophosph 98.0 0.00011 2.4E-09 75.5 13.3 188 37-293 8-199 (371)
58 cd04198 eIF-2B_gamma_N The N-t 98.0 9.4E-05 2E-09 72.1 12.2 132 41-222 3-138 (214)
59 cd02517 CMP-KDO-Synthetase CMP 97.9 0.00068 1.5E-08 66.8 16.8 128 38-222 1-130 (239)
60 PRK09451 glmU bifunctional N-a 97.8 0.00078 1.7E-08 73.1 18.0 181 38-294 5-186 (456)
61 PF12804 NTP_transf_3: MobA-li 97.8 0.00026 5.7E-09 65.1 12.0 37 41-82 1-37 (160)
62 TIGR01479 GMP_PMI mannose-1-ph 97.8 0.00034 7.4E-09 76.6 14.8 196 40-295 2-211 (468)
63 PRK13389 UTP--glucose-1-phosph 97.8 0.00016 3.5E-09 74.7 11.4 162 39-233 9-183 (302)
64 cd02541 UGPase_prokaryotic Pro 97.8 0.0001 2.3E-09 73.9 9.4 62 40-117 2-66 (267)
65 COG1213 Predicted sugar nucleo 97.7 5.5E-05 1.2E-09 74.7 6.5 67 39-120 4-70 (239)
66 TIGR00454 conserved hypothetic 97.7 5.6E-05 1.2E-09 72.5 6.0 60 40-117 2-62 (183)
67 cd02513 CMP-NeuAc_Synthase CMP 97.7 0.0013 2.8E-08 63.7 15.0 134 38-222 1-137 (223)
68 PLN02917 CMP-KDO synthetase 97.6 0.0026 5.6E-08 65.6 17.5 183 38-293 47-237 (293)
69 PRK13368 3-deoxy-manno-octulos 97.6 0.0025 5.4E-08 62.7 16.0 60 38-117 2-61 (238)
70 cd04183 GT2_BcE_like GT2_BcbE_ 97.6 0.00062 1.3E-08 66.6 11.3 39 41-82 1-42 (231)
71 COG0448 GlgC ADP-glucose pyrop 97.5 0.0012 2.6E-08 69.8 13.2 201 37-295 4-211 (393)
72 cd04182 GT_2_like_f GT_2_like_ 97.5 0.00015 3.3E-09 67.8 5.9 39 39-82 1-39 (186)
73 PF01128 IspD: 2-C-methyl-D-er 97.5 0.00018 3.9E-09 71.1 6.5 64 39-117 1-65 (221)
74 cd02507 eIF-2B_gamma_N_like Th 97.5 0.0017 3.7E-08 63.5 13.2 62 41-119 3-68 (216)
75 PRK13385 2-C-methyl-D-erythrit 97.4 0.00022 4.7E-09 70.3 5.9 64 39-117 3-67 (230)
76 PLN02728 2-C-methyl-D-erythrit 97.4 0.00028 6E-09 71.2 5.9 43 37-82 23-65 (252)
77 PF14134 DUF4301: Domain of un 97.4 0.0031 6.6E-08 68.3 14.0 264 52-359 161-508 (513)
78 TIGR03310 matur_ygfJ molybdenu 97.2 0.00054 1.2E-08 64.6 5.8 37 41-82 2-38 (188)
79 COG2266 GTP:adenosylcobinamide 97.2 0.00059 1.3E-08 64.6 5.9 62 39-118 1-62 (177)
80 COG0746 MobA Molybdopterin-gua 97.1 0.0032 6.8E-08 61.1 9.9 39 38-82 4-42 (192)
81 cd02503 MobA MobA catalyzes th 97.1 0.00068 1.5E-08 63.8 4.9 39 39-82 1-39 (181)
82 cd02516 CDP-ME_synthetase CDP- 97.0 0.00098 2.1E-08 64.5 5.7 41 39-82 1-41 (218)
83 PRK00560 molybdopterin-guanine 97.0 0.00084 1.8E-08 64.8 5.1 40 38-82 8-48 (196)
84 TIGR00453 ispD 2-C-methyl-D-er 96.9 0.0009 1.9E-08 65.0 4.5 39 40-81 1-39 (217)
85 PRK00155 ispD 2-C-methyl-D-ery 96.9 0.0012 2.6E-08 64.7 5.2 42 38-82 3-44 (227)
86 TIGR03202 pucB xanthine dehydr 96.8 0.0018 3.9E-08 61.7 5.1 37 40-81 2-38 (190)
87 TIGR02665 molyb_mobA molybdopt 96.8 0.0025 5.4E-08 60.2 5.9 38 39-80 1-38 (186)
88 COG1211 IspD 4-diphosphocytidy 96.7 0.0022 4.7E-08 63.8 5.3 65 38-116 4-68 (230)
89 PRK09382 ispDF bifunctional 2- 96.7 0.0021 4.6E-08 68.5 5.3 43 37-82 4-46 (378)
90 PRK02726 molybdopterin-guanine 96.6 0.0016 3.5E-08 63.0 3.8 39 38-81 7-45 (200)
91 PRK14489 putative bifunctional 96.6 0.0034 7.3E-08 66.7 6.2 42 36-81 3-44 (366)
92 PRK00317 mobA molybdopterin-gu 96.6 0.0018 3.9E-08 61.8 3.7 39 38-80 3-41 (193)
93 PRK14490 putative bifunctional 96.4 0.0044 9.5E-08 65.8 5.5 39 38-81 174-212 (369)
94 PRK14500 putative bifunctional 96.2 0.0044 9.5E-08 65.4 4.1 40 38-82 160-199 (346)
95 PRK15460 cpsB mannose-1-phosph 96.0 0.011 2.5E-07 64.8 6.1 199 38-295 5-220 (478)
96 TIGR00466 kdsB 3-deoxy-D-manno 96.0 0.095 2.1E-06 52.2 12.2 121 41-222 2-127 (238)
97 COG0836 {ManC} Mannose-1-phosp 95.9 0.014 2.9E-07 60.4 6.0 200 39-295 2-213 (333)
98 COG4750 LicC CTP:phosphocholin 95.9 0.012 2.5E-07 56.7 5.1 60 40-116 2-64 (231)
99 cd02518 GT2_SpsF SpsF is a gly 95.3 0.04 8.7E-07 54.1 6.6 59 41-117 2-62 (233)
100 COG1210 GalU UDP-glucose pyrop 94.5 0.053 1.1E-06 55.1 5.0 154 41-232 7-174 (291)
101 TIGR03584 PseF pseudaminic aci 93.1 1.4 3.1E-05 43.3 12.3 131 41-222 2-134 (222)
102 COG2068 Uncharacterized MobA-r 91.1 0.27 5.8E-06 47.9 4.2 60 38-115 5-65 (199)
103 KOG1462 Translation initiation 78.6 1.6 3.4E-05 46.6 2.7 66 38-118 9-77 (433)
104 COG1861 SpsF Spore coat polysa 61.1 18 0.0004 36.0 5.7 63 38-119 3-68 (241)
105 PF02348 CTP_transf_3: Cytidyl 50.4 48 0.001 31.6 6.8 38 40-83 1-38 (217)
106 COG1212 KdsB CMP-2-keto-3-deox 48.4 61 0.0013 32.6 7.0 91 38-139 3-105 (247)
107 PF03641 Lysine_decarbox: Poss 38.8 49 0.0011 29.9 4.5 21 96-116 84-104 (133)
108 COG1535 EntB Isochorismate hyd 28.2 3.3E+02 0.0072 26.6 8.2 102 68-192 49-151 (218)
109 PF10162 G8: G8 domain; Inter 26.4 2.1E+02 0.0045 25.6 6.3 68 433-501 15-84 (125)
110 TIGR03769 P_ac_wall_RPT actino 24.0 40 0.00086 24.5 1.0 14 509-522 5-18 (41)
111 PF13651 EcoRI_methylase: Aden 20.3 4.4E+02 0.0095 28.0 8.0 127 68-219 46-199 (336)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=8.8e-130 Score=1067.38 Aligned_cols=517 Identities=72% Similarity=1.148 Sum_probs=489.9
Q ss_pred ccceeecCCCcccccCCchHHHHHHHHhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHH
Q 009878 5 LLVIILQVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQE 84 (523)
Q Consensus 5 ~~~~~~~vP~g~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~ 84 (523)
..++.|++|.+..+++++.++.+|+++|+++|+|+|||+||||||||||+++||++||+++.+++||||++++||+++|+
T Consensus 95 ~~~i~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~ 174 (615)
T PLN02830 95 FEGWTPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQE 174 (615)
T ss_pred hhhcccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCc
Q 009878 85 SSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHG 164 (523)
Q Consensus 85 ~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG 164 (523)
++.....+....|||+||||++||++|++||++|+|||++++||+||+|+++||+++++|++++++.++++++|+|+|||
T Consensus 175 la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhG 254 (615)
T PLN02830 175 RAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHG 254 (615)
T ss_pred HHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCcc
Confidence 98653222234899999999999999999999999999999999999999999999888999996656889999999999
Q ss_pred hhhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEE
Q 009878 165 DVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVI 244 (523)
Q Consensus 165 di~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~ 244 (523)
|+|.+|++||+|++|+++|+||+||+||||+|++.+||.||||++.++++|+++||+|+|+|++|++|++++.||+.+++
T Consensus 255 di~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~~~~~~dG~~l~~ 334 (615)
T PLN02830 255 DVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIAKLTHKDGREMVI 334 (615)
T ss_pred HHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEEEEecCCCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899987778
Q ss_pred EEeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhh
Q 009878 245 NVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECM 324 (523)
Q Consensus 245 nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~ 324 (523)
||||+|++++++.+++++|++.++++||+|||||||||++|++|+++|+++.+.||+||||||.|++++.++.++|||||
T Consensus 335 vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~~v~q~~trle~~ 414 (615)
T PLN02830 335 NVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDATKTAFKSPTRLECM 414 (615)
T ss_pred EEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCCCceeecchHHHHH
Confidence 89999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hccccccCCCCCceeEEEecccceeecccCCCccc-ccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccc-ccC
Q 009878 325 MQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA-AKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQE-VFN 402 (523)
Q Consensus 325 m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~-~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~-~~~ 402 (523)
||||++.+..++++||++++||.+|+||||+..+| +|+++|+|++||++++.|+|++++.+|+++|+.+.++... .++
T Consensus 415 mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~ 494 (615)
T PLN02830 415 MQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFN 494 (615)
T ss_pred HHHHhhhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccC
Confidence 99999999888899999999999999999996666 6679999999999999999999999999999988755544 688
Q ss_pred CeeecCCCeEEEcCCcCCCHHHHhhhc-CCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC-eeEccce
Q 009878 403 GQEVEVWPRLTWKPKWGLTFSEIKNKV-SGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG-KVQNKGW 480 (523)
Q Consensus 403 ~~~~~~~P~i~l~p~~~~~~~~~~~k~-~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~-~v~N~g~ 480 (523)
+++++.+|+|.|+|.|+++++++++|| +++|+|+++|+|+|+|+++||+||+|||+|+|.|++|++|+|++ +|+|+||
T Consensus 495 ~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~~~i~g~~v~N~g~ 574 (615)
T PLN02830 495 GIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVPGAEVTVGGLRVKNKGW 574 (615)
T ss_pred CcccCCCCeEEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCCCCeEEecCeEEecCCc
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999988 9999999
Q ss_pred eeeeCCCCCCCCccceeeecceeeeeeeEEEEecCCCceecC
Q 009878 481 TLEPVDHKDTSVPEEIRIRGFKINKLEQLERSYSEPGKFSLK 522 (523)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~g~~~~~ 522 (523)
+|++++ .|+++||++|||||+++|.|+.++.||+||+|+|+
T Consensus 575 ~~~~~~-~~~~~~~~~~irg~~~~~~e~~~~~~~~~g~~~~~ 615 (615)
T PLN02830 575 TWEPVD-KGTSAPEEIRIRGFVIKKVETAELVFDKPGKYTVP 615 (615)
T ss_pred EEEecC-CCCCcchhhhhcceeEeeeeeEEEEecCCCceeCC
Confidence 999998 56789999999999999999999999999999985
No 2
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=5.9e-90 Score=731.80 Aligned_cols=388 Identities=18% Similarity=0.209 Sum_probs=341.6
Q ss_pred hHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHH
Q 009878 32 GVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 111 (523)
Q Consensus 32 G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t 111 (523)
..++|+|+|||+|||||||||||++||+++|++ +++||||++++||+++++.|+. .|||+||||+.||++|
T Consensus 73 ~~~~L~k~avlkLnGGlGTrmG~~~PKs~i~v~--~~~sfldl~~~qi~~l~~~~g~-------~vPl~iMtS~~T~~~T 143 (469)
T PLN02474 73 TKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNKKYGC-------NVPLLLMNSFNTHDDT 143 (469)
T ss_pred HHHHHhcEEEEEecCCcccccCCCCCceeEEcC--CCCcHHHHHHHHHHHHHHHcCC-------CceEEEECCCchhHHH
Confidence 356789999999999999999999999999986 8999999999999999999876 8999999999999999
Q ss_pred HHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeec-CCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEE
Q 009878 112 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 190 (523)
Q Consensus 112 ~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~ 190 (523)
++||++|++|+ ++|++|+|+++||++. ++++.+. .......+|+|+||||+|.+|++||+|++|+++|+||+||+
T Consensus 144 ~~~l~k~~~~~---~~i~~F~Q~~~P~l~~-~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~ 219 (469)
T PLN02474 144 QKIVEKYTNSN---IEIHTFNQSQYPRVVA-DDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIA 219 (469)
T ss_pred HHHHHHcCCCc---cceEEEecCceeeEec-CCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEE
Confidence 99999999884 5799999999999975 5666552 11123567999999999999999999999999999999999
Q ss_pred eCCCccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCC
Q 009878 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 191 ~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
|+|| |++++||.||||++.++++|++||++|+ +.+++|++|.+ +|++++ +||+|+|++.++... | ..
T Consensus 220 nvDN-Lga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~---dgk~~l--vEysqvp~e~~~~f~--~----~~ 287 (469)
T PLN02474 220 NSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFK--S----IE 287 (469)
T ss_pred ecCc-cccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEE---CCEEEE--EEEecCCHHHHHhhc--c----cc
Confidence 9999 9999999999999999999999999986 66667778876 999988 999999999875432 2 23
Q ss_pred CCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEeccccee
Q 009878 270 GYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAY 349 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~F 349 (523)
+|.+| |||||||+|++++++++.....++.++|||..|+ .+..|||++|||++++|+++ ..++||| +||
T Consensus 288 kf~~f--Ntnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g-----~kv~q~Et~ig~ai~~f~~~---~~v~VpR-~rF 356 (469)
T PLN02474 288 KFKIF--NTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-----VKVLQLETAAGAAIRFFDNA---IGINVPR-SRF 356 (469)
T ss_pred cceee--eeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCC-----eeEEEeHHHHHHHHHhCCCc---eEEEEch-hhc
Confidence 36654 9999999999999998754444556789998864 46789999999999998643 4469999 579
Q ss_pred ecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCcCCCHHHHhhhc
Q 009878 350 APVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKV 429 (523)
Q Consensus 350 sPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~ 429 (523)
+||||++++ .++++|+|.++++||..+|++.. ...|.|.|+|.| .++++|.+||
T Consensus 357 ~PVK~~~dl-------------l~~rsdly~l~~~~l~~~~~~~~------------~~~p~IeL~~~f-~~v~~f~~rf 410 (469)
T PLN02474 357 LPVKATSDL-------------LLVQSDLYTLVDGFVIRNKARTN------------PSNPSIELGPEF-KKVANFLSRF 410 (469)
T ss_pred cCCCCCCCH-------------HHHHHHHHHhccCeEEecCcccC------------CCCCcEEECccc-ccHHhHHHhc
Confidence 999999975 59999999999999999988642 246899999996 5899999999
Q ss_pred CCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC--eeEcccee
Q 009878 430 SGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGWT 481 (523)
Q Consensus 430 ~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~--~v~N~g~~ 481 (523)
+++|+|.++++|+|+|||+||+||+|+|+|+|.|++|.+++||+ +++|+-+.
T Consensus 411 ~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~ 464 (469)
T PLN02474 411 KSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDIN 464 (469)
T ss_pred CCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeec
Confidence 99999999999999999999999999999999999999999997 99987653
No 3
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=8e-90 Score=700.96 Aligned_cols=315 Identities=68% Similarity=1.107 Sum_probs=299.0
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhC
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 118 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~ 118 (523)
+|+|+||||||||||+++||+++|+++.+++||||++++||+++|+++.. +....|||+||||+.||++|++||++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~---~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK---GEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc---cCCCceeEEEECCCchhHHHHHHHHHC
Confidence 58999999999999999999999999889999999999999999998753 123389999999999999999999999
Q ss_pred CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcccc
Q 009878 119 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 198 (523)
Q Consensus 119 ~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~ 198 (523)
+|||++++||+||+|+++||+++.+|++++..+++++++|+|+||||+|.+|+++|+||+|+++|+||++|+||||+|++
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 99999999999999999999987899995333778899999999999999999999999999999999999999999999
Q ss_pred ccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccce
Q 009878 199 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 278 (523)
Q Consensus 199 ~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNi 278 (523)
++||.|+|+++.++++++++||+|+|+|++|++|++++.||+++++|||||||+++++++++++|+..+.+|||+|||||
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 99999999999999999999999999999999999877899999999999999999999998889888889999999999
Q ss_pred eeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeecccCCC
Q 009878 279 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 356 (523)
Q Consensus 279 nnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~ 356 (523)
|+|+|+|++|.+.|+++.+.+|+|+||||.|.+++.+++|+||||||||++++|+.+.++++++|+||.+||||||+.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCCC
Confidence 999999999999999988899999999999999899999999999999999999999999999999999999999974
No 4
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=6e-85 Score=697.14 Aligned_cols=387 Identities=24% Similarity=0.321 Sum_probs=336.1
Q ss_pred cceeecCCCcccccCCc---hHHHHHHHHhHHhh--cceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHH
Q 009878 6 LVIILQVPTGEVLKFGD---DTFINYEQAGVKEA--KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 80 (523)
Q Consensus 6 ~~~~~~vP~g~~l~~~~---~~~~~~~~~G~~~l--~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~ 80 (523)
..+.| +|++...+... ++..+|+++|+++| +|||||+||||||||||+++||+++||++++++||||++++||+
T Consensus 80 ~~i~P-~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~ 158 (493)
T PLN02435 80 PAIEP-VPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERIL 158 (493)
T ss_pred hccCC-CChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHH
Confidence 45666 77766554432 56789999999999 49999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccc---CCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccc
Q 009878 81 ALQESSCRLAE---GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQ 157 (523)
Q Consensus 81 ~l~~~~~~~~~---g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~ 157 (523)
++|+++..... +....|||+||||+.||++|++||++|+|||++++||+||+|+++||++ .+|++++ +++++++
T Consensus 159 ~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l--~~~~~i~ 235 (493)
T PLN02435 159 CVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIM--ETPFKVA 235 (493)
T ss_pred HHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCccc--CCCcccc
Confidence 99999865311 1223899999999999999999999999999999999999999999996 7999999 7888999
Q ss_pred cccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEec
Q 009878 158 TKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTH 236 (523)
Q Consensus 158 ~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~ 236 (523)
|+|+||||+|.+|++||+|++|+++|++|+||+|+||+|++++||.||||++.++++|++|||+|+ |.|++|++|+. .
T Consensus 236 ~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~-~ 314 (493)
T PLN02435 236 KAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRR-G 314 (493)
T ss_pred cCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEe-c
Confidence 999999999999999999999999999999999999999999999999999999999999999975 89999999985 3
Q ss_pred CCCceEEEEEeccCCCHHHHhcCCCC-CCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCCC
Q 009878 237 ADGRSMVINVEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASK 312 (523)
Q Consensus 237 ~~G~~~v~nvEYsel~~~~~~~~~~~-g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK---~~d~~~ 312 (523)
.+|++.+ |||+||+++++++++++ |++. +..|||+||||++++++++.+.....+|.|+..| |.|..
T Consensus 315 ~~g~~~v--vEYsEl~~~~~~~~~~~~g~L~------~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~- 385 (493)
T PLN02435 315 KGGPLTV--VEYSELDQAMASAINQQTGRLR------YCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGY- 385 (493)
T ss_pred CCCCEEE--EEeccCCHHHHhccCccccccc------cchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCC-
Confidence 5888765 99999999999888765 7665 4579999999999999988764444599998876 45532
Q ss_pred CcccCcchhhhhhccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCc
Q 009878 313 TSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQ 392 (523)
Q Consensus 313 ~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~ 392 (523)
.+.+|||+||||++.+ +.++++++|+|++|||||||+.+.. .|||+||+.+|+++|++||+++|+.
T Consensus 386 ---~ngiK~E~FiFDvf~~---a~~~~~~eV~R~~EFaPlKN~~g~~--------~Dsp~tar~~l~~~~~~wl~~aG~~ 451 (493)
T PLN02435 386 ---TMGLKLEQFIFDAFPY---APSTALFEVLREEEFAPVKNANGSN--------FDTPESARLLVLRLHTRWVVAAGGF 451 (493)
T ss_pred ---cceEEeeeeeecchhh---cCceEEEEEchhhccCcccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHcCCE
Confidence 4789999999998544 5678999999999999999999864 8999999999999999999999997
Q ss_pred ccCCcccccCCeeecCCCeEEEcCCcCCCHHHH
Q 009878 393 VDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEI 425 (523)
Q Consensus 393 v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~ 425 (523)
+.+.... ....++++|+++|+ |+.++.+
T Consensus 452 ~~~~~~~--~~~~vEisP~~sY~---gE~L~~~ 479 (493)
T PLN02435 452 LTHSVPL--YATGVEVSPLCSYA---GENLEAI 479 (493)
T ss_pred ecCCccc--cCCcEEeCCceeeC---CCCchhh
Confidence 7532110 01257889999999 7777665
No 5
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-84 Score=661.34 Aligned_cols=392 Identities=18% Similarity=0.231 Sum_probs=353.2
Q ss_pred HHhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchH
Q 009878 30 QAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 109 (523)
Q Consensus 30 ~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e 109 (523)
+.+..+|+|+||++|+||+||.|||.+||++++|+ +|.||||+.++||+.|+++|+. ++|+++|||++|++
T Consensus 95 ~~~~~~L~KLavlKLNGGlGttmGc~gPKS~ieVR--~g~tFLDL~V~QIe~LN~~Y~~-------dVPlvLMNSfnTde 165 (498)
T KOG2638|consen 95 ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVIEVR--DGLTFLDLTVRQIENLNKTYNV-------DVPLVLMNSFNTDE 165 (498)
T ss_pred hhHHHhhhheEEEEecCCcCCccccCCCceeEEEc--CCCchhHHHHHHHHHHHhhcCC-------CCCEEEecccccch
Confidence 66788899999999999999999999999999999 8999999999999999999987 89999999999999
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeec-CCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEE
Q 009878 110 RTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVL 188 (523)
Q Consensus 110 ~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~ 188 (523)
+|++++++|.++ +.+|++|.|+++|+++.++..|+.+ ..+....+|||+||||+|.+|+.||+||+|+++|+||+|
T Consensus 166 dT~kil~ky~~~---kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylF 242 (498)
T KOG2638|consen 166 DTQKILKKYAGS---KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLF 242 (498)
T ss_pred HHHHHHHHhcCC---ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEE
Confidence 999999999876 4579999999999999877777765 345457899999999999999999999999999999999
Q ss_pred EEeCCCccccccchHHhHHHhhcCccceeeeccCCcccccCc-EEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCcc
Q 009878 189 FFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGG-ITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC 267 (523)
Q Consensus 189 v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~-i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~ 267 (523)
|+|+|| ||+++|..+|.+++.++++|.|||++|+.+|.+|| ++.+ +|++++ +||+|+|++.. .++..
T Consensus 243 VSNiDN-LGAtvDL~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y---~G~lrl--LEiaQVP~ehv------~eFkS 310 (498)
T KOG2638|consen 243 VSNIDN-LGATVDLNILNHVINNNIEYLMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHV------DEFKS 310 (498)
T ss_pred Eecccc-ccceeeHHHHHHHhcCCCceEEEecccchhhcccceEEee---cCEEEE--EEeccCChhHh------hhhcc
Confidence 999999 99999999999999999999999999999988877 6665 999999 99999999864 25666
Q ss_pred CCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccc
Q 009878 268 ETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWL 347 (523)
Q Consensus 268 ~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~ 347 (523)
.+.|++| ||||+|++|++++++++.+...+++|+|||..|.. ..++|||+++++++++|+++ .|+ .||| +
T Consensus 311 ~kkFkif--NTNNlWinLkavKrlve~~~l~meIi~N~kti~~~----~~viQleTa~GaaIk~F~na--~gv-~VpR-s 380 (498)
T KOG2638|consen 311 IKKFKIF--NTNNLWINLKAVKKLVEENALNMEIIVNPKTIDRG----IEVIQLETAAGAAIKFFDNA--IGV-NVPR-S 380 (498)
T ss_pred ceeEEEe--ccCCeEEehHHHHHHhhcCcccceeecChhhccCC----ceEEEEhhhhhHHHHhCCCc--eee-eccc-c
Confidence 6778887 99999999999999999988889999999988742 57899999999999999876 365 8999 9
Q ss_pred eeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCcCCCHHHHhh
Q 009878 348 AYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKN 427 (523)
Q Consensus 348 ~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~ 427 (523)
||.|||+++|+. ..+++||.+.+..|+....+ ..+..|.|.|+++| .++++|..
T Consensus 381 RFlPVKt~sDLl-------------Lv~S~Ly~ld~Gsl~l~~~r------------~~~t~P~vkLg~~F-~kv~~f~~ 434 (498)
T KOG2638|consen 381 RFLPVKTCSDLL-------------LVMSNLYDLDNGSLTLSPSR------------FGPTPPLVKLGSEF-KKVEDFLG 434 (498)
T ss_pred ccccccccccce-------------eeecceeeccCCeEEechhh------------cCCCCCeeecchhh-hHHHHHHh
Confidence 999999999985 67777777766555433322 23567999999997 58999999
Q ss_pred hcCCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC--eeEcccee
Q 009878 428 KVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGWT 481 (523)
Q Consensus 428 k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~--~v~N~g~~ 481 (523)
||+++|+|.+++||+|+|+|+||+||+|+|+|||.|++|.+++||+ +++|+-+.
T Consensus 435 rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~ 490 (498)
T KOG2638|consen 435 RFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVS 490 (498)
T ss_pred cCCCCCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEe
Confidence 9999999999999999999999999999999999999999999997 99998764
No 6
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.3e-81 Score=665.90 Aligned_cols=368 Identities=26% Similarity=0.339 Sum_probs=294.4
Q ss_pred HhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHH
Q 009878 31 AGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 110 (523)
Q Consensus 31 ~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~ 110 (523)
.+..+++|+|||+||||||||||+++||+++||+ +++||||++++||+++++.|+. .|||+||||+.||++
T Consensus 49 ~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v~--~~~t~ldl~~~qi~~l~~~~~~-------~iPl~iMtS~~T~~~ 119 (420)
T PF01704_consen 49 LEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPVR--EGKTFLDLIVEQIEALNKKYGV-------DIPLYIMTSFNTHED 119 (420)
T ss_dssp HHHHHTTCEEEEEEEESBSGCCTESSBGGGSEEE--TTEEHHHHHHHHHHHHHHHHTT-------T-EEEEEEETTTHHH
T ss_pred hhHHhhCCEEEEEEcCcccCccCCCCCCcceecC--CcccHHHHHHHHHHHHhccccc-------cceEEEecCcccHHH
Confidence 3444456999999999999999999999999996 7999999999999999999976 899999999999999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCC--C-CccccccCCCchhhHHHhhcChhHHHHHCCceEE
Q 009878 111 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKN--K-YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWV 187 (523)
Q Consensus 111 t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~--~-~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi 187 (523)
|++||++ |||++.+ |++|+|+++||++. ++++++..+. + ...+|+|+||||+|.+|++||+||+|+++|++|+
T Consensus 120 T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~-d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyi 195 (420)
T PF01704_consen 120 TRKFLEK--YFGLDVD-VFFFKQSKLPAIDA-DGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYI 195 (420)
T ss_dssp HHHHHHH--GCGSSCC-EEEEEE-EEEEEET-TTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EE
T ss_pred HHHHHHH--hcCCCcc-eEEEeecCcceEeC-CCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEE
Confidence 9999999 8999877 99999999999975 6665553221 2 1356999999999999999999999999999999
Q ss_pred EEEeCCCccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCc
Q 009878 188 LFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVN 266 (523)
Q Consensus 188 ~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~ 266 (523)
||+|+|| |++++||.||||+++++++|++|||+|+ |.|++|++|++ +|++++ |||+|+|++..+. +.
T Consensus 196 fv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~~~---~G~~~v--vEysqip~~~~~~------~~ 263 (420)
T PF01704_consen 196 FVSNVDN-LGAVVDPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLCRY---DGKLQV--VEYSQIPKEHMAE------FK 263 (420)
T ss_dssp EEEETTB-TT-TT-HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEEEE---TTEEEE--EEGGGS-HHGHHH------HT
T ss_pred EEEecCC-cccccCHHHHHHHHhccchhheeeeecCCCCCceeEEEEe---CCccEE--EEeccCCHHHHHh------hh
Confidence 9999999 9999999999999999999999999986 77888989987 999888 9999999996543 23
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEeccc
Q 009878 267 CETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTW 346 (523)
Q Consensus 267 ~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~ 346 (523)
+.++|.+| ||||+||+|++++++++.....||+|+|+|..+... ...+.+|||++|++++..|.+ .+++ +|+|
T Consensus 264 ~~~~~~~F--ntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d-~~~~~~q~Et~i~~~i~~f~~--~~~v-~V~R- 336 (420)
T PF01704_consen 264 DIKGFLLF--NTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVD-NGIKVIQFETAIGFAIFQFDN--SFAV-EVPR- 336 (420)
T ss_dssp STTTSBEE--EEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEEC-TEEEEEEEECGGGGGGGGCTS--EEEE-EE-G-
T ss_pred ccccceEE--EeceeeEEHHHHHHHHHhccccCccEEcchhccccc-CCccEEeehhhhhchHhhccC--cEEE-EEcH-
Confidence 34456666 999999999999999998778899999999763211 235789999999999888853 4455 9999
Q ss_pred ceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCcCCCHHHHh
Q 009878 347 LAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIK 426 (523)
Q Consensus 347 ~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~ 426 (523)
+||+||||++++ .+++++-+.++++....-........|.|.|++.| .++++|.
T Consensus 337 ~rF~PvKn~~dL-------------------------l~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f-~~v~~~~ 390 (420)
T PF01704_consen 337 DRFAPVKNTSDL-------------------------LLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHF-KKVDDFE 390 (420)
T ss_dssp GG--B-SSHHHH-------------------------HHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGG-SSHHHHH
T ss_pred HHcCCccccCcc-------------------------eeeccceeccccceeeecccccCCCCCeeccCccc-CchHHhh
Confidence 999999999986 34555555554322111111223356999999997 6899999
Q ss_pred hhcCCCCccCCCceEEEEeceEEecCeEEe
Q 009878 427 NKVSGSCSVSQKSTMVIKGRNVVLEDLSLN 456 (523)
Q Consensus 427 ~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~ 456 (523)
+||+.+|+|.++++|+|+|||+||+||+|+
T Consensus 391 ~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 391 KRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp HHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred hhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 999999999999999999999999999986
No 7
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=5e-80 Score=660.93 Aligned_cols=376 Identities=23% Similarity=0.293 Sum_probs=327.8
Q ss_pred chHHHHHHHHhHHhhc--ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCC--cCcc
Q 009878 22 DDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGK--CQEI 97 (523)
Q Consensus 22 ~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~--~~~i 97 (523)
.+++.+|+++|+++|+ |+|+|+||||+|||||++.||+++|+++++++||||+++++|+++++++... +|. ...|
T Consensus 88 ~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~-~~~~~~~~I 166 (482)
T PTZ00339 88 EKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAV-SGGGDDPTI 166 (482)
T ss_pred HHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcc-cccccCCCC
Confidence 5778999999999998 6999999999999999999999999988889999999999999999988543 221 2379
Q ss_pred cEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhH
Q 009878 98 PFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLK 177 (523)
Q Consensus 98 Pl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld 177 (523)
||+||||++||+.|++||++|+|||++++||+||+|+++||++.++|++++ +++++++|+|+||||+|.+|++||+|+
T Consensus 167 p~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill--~~~~~i~~~P~GnGgiy~aL~~sG~Ld 244 (482)
T PTZ00339 167 YILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIM--SSQGSLCTAPGGNGDVFKALAKCSELM 244 (482)
T ss_pred CEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCccc--CCCCceeeCCCCCcHHHHHHHHCCcHH
Confidence 999999999999999999999999999999999999999999877899999 667789999999999999999999999
Q ss_pred HHHHCCceEEEEEeCCCccccccchHHhHHHhhcCc-cceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHH
Q 009878 178 EWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQY-HVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLR 256 (523)
Q Consensus 178 ~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~-~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~ 256 (523)
+|.++|++|+||+||||+|++++||.||||++++++ +++.+|++|.|.|++|++|+. +|++.+ |||+||+++++
T Consensus 245 ~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~---~g~~~v--vEYsEi~~~~~ 319 (482)
T PTZ00339 245 DIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLK---DYEWQV--VEYTEINERIL 319 (482)
T ss_pred HHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEe---CCcccE--EEEeccChhhh
Confidence 999999999999999999999999999999999999 999999988899999999987 888766 99999999988
Q ss_pred hcCCCC-CCCccCCCCCCCccceeeEEEehhhhHHHHhh-cCCccccccCCc---ccCCCCCcccCcchhhhhhcccccc
Q 009878 257 ATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKK-TGGAIKEFVNPK---YKDASKTSFKSSTRLECMMQDYPKT 331 (523)
Q Consensus 257 ~~~~~~-g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~-~~g~l~~~vnpK---~~d~~~~~~~~~~rLE~~m~D~~~~ 331 (523)
+..+++ |.+ .+++||||||||++++++++++. ....+|.|++.| |.|... +.++.+|||+||||++.+
T Consensus 320 ~~~~~~~g~l------~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-~~png~K~E~FiFDvf~~ 392 (482)
T PTZ00339 320 NNDELLTGEL------AFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-DKTMGIKLEAFIFDIFRY 392 (482)
T ss_pred hcccccCCee------cccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-CCcceeeehhhhhhHHHh
Confidence 765442 333 35689999999999999988753 233589999876 556322 446789999999998654
Q ss_pred CCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCe
Q 009878 332 LPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPR 411 (523)
Q Consensus 332 f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~ 411 (523)
+.++++++|+|++|||||||+.+.. .|||+||+.+|+++|++||+++|+.+.+.... .+..++++|+
T Consensus 393 ---~~~~~~~ev~R~~eFsPlKNa~g~~--------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~--~~~~~Eisp~ 459 (482)
T PTZ00339 393 ---AKNVLILEVDREDEFAPIKNADGAA--------ADTILNAQKLLLSLHTRWLEAALETVAGNPRE--GLNLCEISPL 459 (482)
T ss_pred ---ccccceeeechhhccccccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCCeeeccccC--CCceEEecCc
Confidence 4578999999999999999999864 79999999999999999999999976532100 1246789999
Q ss_pred EEEcCCcCCCHHHHhhh
Q 009878 412 LTWKPKWGLTFSEIKNK 428 (523)
Q Consensus 412 i~l~p~~~~~~~~~~~k 428 (523)
++|+ |+.++.+++|
T Consensus 460 ~sy~---ge~l~~~~~~ 473 (482)
T PTZ00339 460 VSYG---GEGLFQYPGK 473 (482)
T ss_pred ceeC---CCCcccccCc
Confidence 9999 7778766443
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=5.9e-75 Score=598.36 Aligned_cols=312 Identities=28% Similarity=0.450 Sum_probs=283.7
Q ss_pred HHHHHhHHhhc--ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcC
Q 009878 27 NYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTS 104 (523)
Q Consensus 27 ~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS 104 (523)
+|+++|+++|+ ++|+|+||||+|||||+++||+++|+...+++||||+++++|++++.++++. +|+...|||+||||
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~-~~~~~~ip~~imtS 80 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEA-SGKKVPIPWYIMTS 80 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEEcC
Confidence 78999999998 9999999999999999999999999987789999999999999999999753 34344899999999
Q ss_pred ccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCc
Q 009878 105 DDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGL 184 (523)
Q Consensus 105 ~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~ 184 (523)
++||+.|++||++++|||+++++|++|.|+++||++ .+|++++ +++.+++|+|+||||+|.+|++||+|++|+++|+
T Consensus 81 ~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l--~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~ 157 (323)
T cd04193 81 EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILL--EEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGI 157 (323)
T ss_pred hhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCcccc--CCCCccccCCCCchHHHHHHHHCChHHHHHhCCC
Confidence 999999999999999999999999999999999995 6899999 6678999999999999999999999999999999
Q ss_pred eEEEEEeCCCccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCC
Q 009878 185 KWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG 263 (523)
Q Consensus 185 ~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g 263 (523)
||++|+|+||+|++++||.||||+++++++|++|||+|+ |.|++|++|.+ ||++++ |||+|+|++++++++++|
T Consensus 158 ~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~---~g~~~v--vEysel~~~~~~~~~~~g 232 (323)
T cd04193 158 KYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV--VEYSEISDELAEKRDADG 232 (323)
T ss_pred EEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE---CCeEEE--EEeecCCHHHHhccCcCC
Confidence 999999999999999999999999999999999999997 99999999987 999887 999999999998887777
Q ss_pred CCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcc---cCCCCC----cccCcchhhhhhccccccCCCCC
Q 009878 264 DVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKY---KDASKT----SFKSSTRLECMMQDYPKTLPPSA 336 (523)
Q Consensus 264 ~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~---~d~~~~----~~~~~~rLE~~m~D~~~~f~~~~ 336 (523)
++. +++||||+|||+|++++++++.....||.|+++|. .|..+. +..+++|||+||||++.++ .
T Consensus 233 ~l~------f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~---~ 303 (323)
T cd04193 233 ELQ------YNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFA---K 303 (323)
T ss_pred cEe------cccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhC---C
Confidence 764 56899999999999999998776557999999984 353332 2346789999999997776 4
Q ss_pred ceeEEEecccceeecccCCC
Q 009878 337 KVGFTVMDTWLAYAPVKNNP 356 (523)
Q Consensus 337 ~vg~~~v~R~~~FsPvKn~~ 356 (523)
++.+++|+|++||+||||++
T Consensus 304 ~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 304 NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred ceEEEEEChhhccccCcCCC
Confidence 67889999999999999984
No 9
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=3e-74 Score=584.75 Aligned_cols=289 Identities=19% Similarity=0.225 Sum_probs=257.4
Q ss_pred hcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 36 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 36 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
|+|+|||+||||||||||+++||+++|+. +++||||++++||++++++|+. .|||+||||+.||++|++||
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v~--~~~s~l~l~~~~i~~l~~~~~~-------~iPl~iMtS~~T~~~T~~~l 71 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVR--DGKTFLDLTVQQIEHLNKTYGV-------DVPLVLMNSFNTDEDTKKIL 71 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeecC--CCCcHHHHHHHHHHHHHHHcCC-------CceEEEECCCcchHHHHHHH
Confidence 57999999999999999999999999995 8999999999999999999876 89999999999999999999
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeec-CCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCC
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN 194 (523)
++|++ +++||++|+|+++||++. ++++.+. ..++++++|+|+||||+|.+|++||+|++|+++|+||++|+|+||
T Consensus 72 ~~~~~---~~~~v~~F~Q~~~P~~~~-~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN 147 (300)
T cd00897 72 KKYAG---VNVDIHTFNQSRYPRISK-ETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN 147 (300)
T ss_pred HHcCC---CccCeEEEecCCcccCcc-ccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc
Confidence 99885 678999999999999974 6777773 236779999999999999999999999999999999999999999
Q ss_pred ccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCC
Q 009878 195 GLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 273 (523)
Q Consensus 195 ~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~ 273 (523)
|++++||.||||++.+++++++|||+|+ |.|++|++|.+ +|++++ |||+|+|++.++... +...|.+
T Consensus 148 -L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~---~g~~~v--vEyse~p~e~~~~~~------~~~~~~~ 215 (300)
T cd00897 148 -LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHVDEFK------SIKKFKI 215 (300)
T ss_pred -ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE---CCEEEE--EEeccCCHHHHHhhc------CcccceE
Confidence 9999999999999999999999999986 77789999987 999888 999999999876543 1223554
Q ss_pred CccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeeccc
Q 009878 274 FPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVK 353 (523)
Q Consensus 274 f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvK 353 (523)
+|||||||+|++++++++.....+|.|+|.|..+++ .+++|||+||||++.+|++ ..+++|||+ ||+|||
T Consensus 216 --~nt~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~----~~~~qlE~~i~da~~~~~~---~~~~eV~R~-rF~PvK 285 (300)
T cd00897 216 --FNTNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGG----LNVIQLETAVGAAIKNFDN---ALGVNVPRS-RFLPVK 285 (300)
T ss_pred --EEEeEEEEEHHHHHHHHHhccCCCCeeecccccCCC----CCEEEeHhHhhhHHHhCCC---cEEEEEChh-hcCCCC
Confidence 599999999999999987655569999999977543 6889999999999888743 356799995 799999
Q ss_pred CCCccc
Q 009878 354 NNPEDA 359 (523)
Q Consensus 354 n~~~~~ 359 (523)
|++++.
T Consensus 286 n~~dll 291 (300)
T cd00897 286 TTSDLL 291 (300)
T ss_pred ChHHHH
Confidence 999984
No 10
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.5e-70 Score=572.61 Aligned_cols=386 Identities=28% Similarity=0.410 Sum_probs=335.0
Q ss_pred eecCCCcccc---cCCchHHHHHHHHhHHhhc--ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHH
Q 009878 9 ILQVPTGEVL---KFGDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQ 83 (523)
Q Consensus 9 ~~~vP~g~~l---~~~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~ 83 (523)
.+.+|+.... ..+.++..+|+..|+++|+ ++|++++|||||||||+++||+++|+++++++|+||+++++|+++|
T Consensus 63 ~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq 142 (477)
T KOG2388|consen 63 IRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQ 142 (477)
T ss_pred cCCCCccccceecccCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHH
Confidence 3445554432 2333455669999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCC
Q 009878 84 ESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGH 163 (523)
Q Consensus 84 ~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~Gh 163 (523)
+++... .++...||||||||..|++.|++||+.|+|||++++||+||+|+++||++ .+|++++ +.+.+++++|.||
T Consensus 143 ~~a~~~-~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~l--e~k~~~a~ap~gn 218 (477)
T KOG2388|consen 143 ELASMA-VSDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFIL--EQKNSLAAAPDGN 218 (477)
T ss_pred HHHhhh-hccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceec--cCccchhcCCCCC
Confidence 988764 33345899999999999999999999999999999999999999999996 5788888 7788999999999
Q ss_pred chhhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccC-CcccccCcEEEEecCC-Cce
Q 009878 164 GDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHAD-GRS 241 (523)
Q Consensus 164 Gdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~~~~~~-G~~ 241 (523)
|++|.++.++ |++|.++|++|++++||||+|++.+||.|+||++++++++++++|+| .|.|.+|++|.. + |.+
T Consensus 219 gg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~---~~G~~ 293 (477)
T KOG2388|consen 219 GGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALK---GQGTP 293 (477)
T ss_pred cHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEec---CCCce
Confidence 9999999998 99999999999999999999999999999999999999999999997 589999999986 4 755
Q ss_pred EEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCCC----Cc
Q 009878 242 MVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASK----TS 314 (523)
Q Consensus 242 ~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK---~~d~~~----~~ 314 (523)
++|||+|+++++++.+.+|| +.+.+++||||||+|.+++++++.......+|+|+..| |.|.++ ..
T Consensus 294 --~vvEYsEi~~~~a~~~~~d~-----g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~ 366 (477)
T KOG2388|consen 294 --LVVEYSELDAELAKAKAPDG-----GRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPT 366 (477)
T ss_pred --eEEEecccCHHHHhhccccc-----CccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCC
Confidence 55999999999999998873 33568899999999999999998877666678887654 555433 12
Q ss_pred ccCcchhhhhhccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCccc
Q 009878 315 FKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVD 394 (523)
Q Consensus 315 ~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~ 394 (523)
-++.+++|.|+||+ |+.+.++++++|+|+.+|||+||..... .|||.||+.+++++|.+|+..+|+.+.
T Consensus 367 kpnGik~E~fifdv---f~~~k~f~~meV~Re~efSPlKng~~~~--------~D~p~T~~~~~l~~h~~wi~~~g~~f~ 435 (477)
T KOG2388|consen 367 KPNGIKLEQFIFDV---FPSAKKFGLMEVPREEEFSPLKNGGKSS--------TDNPSTARIALLRLHIRWIEKAGGIFS 435 (477)
T ss_pred CCCceeEEeeeeee---cccccceeEEecchhhhcCccccCCCCC--------CCChhHHHHHHHHhhhhehhccCcEEe
Confidence 24568999999997 4456788999999999999999999873 999999999999999999999999986
Q ss_pred CCcccccCCeeecCCCeEEEcCCcCCCHHHHhhhcC
Q 009878 395 DPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVS 430 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~~ 430 (523)
+.+ ..++++|.|+|. |+.++.+...+.
T Consensus 436 ~~~------~~~evs~~vsy~---GE~lEs~~~g~~ 462 (477)
T KOG2388|consen 436 DAE------AVVEVSPLVSYA---GENLESVPSGFE 462 (477)
T ss_pred cCc------ceEEecceeeec---ccchhhccccce
Confidence 432 467899999998 888999886443
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-64 Score=527.76 Aligned_cols=383 Identities=19% Similarity=0.215 Sum_probs=313.2
Q ss_pred ccceeecCCCcccccCCchHH-HHHHHHhHHh--hcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 5 LLVIILQVPTGEVLKFGDDTF-INYEQAGVKE--AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 5 ~~~~~~~vP~g~~l~~~~~~~-~~~~~~G~~~--l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
.+.|.+-=|...+.-.+.+.. .+++ |+.. ++|+|||+||||||||||+++||++++|+ +|+||||+++|||+.
T Consensus 71 ~~~~~ki~~~~~d~~~~~~~~~~~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ 146 (472)
T COG4284 71 TQEWDKIRPPNPDDVVDYEKKILEGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKY 146 (472)
T ss_pred ceeecccCCCChhhhccchhhccchh--hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHH
Confidence 345666556664432222222 2222 4555 67999999999999999999999999998 899999999999999
Q ss_pred HHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccC
Q 009878 82 LQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPH 161 (523)
Q Consensus 82 l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~ 161 (523)
++.+|+. +|||+|||| .|++.|..+|+.++|||++++||+||+|+.+||+.+.+|++++...+.. ++|+|+
T Consensus 147 ln~~~~~-------~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~ 217 (472)
T COG4284 147 LNRQYNV-------DVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPP 217 (472)
T ss_pred HHHHhCC-------CCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcc-cccCCC
Confidence 9999986 899999999 9999999999999999999999999999999977788999999543332 999999
Q ss_pred CCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccC-CcccccCcEEEEecCCCc
Q 009878 162 GHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGR 240 (523)
Q Consensus 162 GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~~~~~~G~ 240 (523)
||||+|.+|++||++++|.++|+||++|+|||| |++++||.|||+++.+++++.||++.| ++.+++|.++.+ +|+
T Consensus 218 GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~---~g~ 293 (472)
T COG4284 218 GNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY---DGK 293 (472)
T ss_pred CCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe---CCc
Confidence 999999999999999999999999999999999 999999999999999999999999997 588889998876 999
Q ss_pred eEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCC------C-
Q 009878 241 SMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK------T- 313 (523)
Q Consensus 241 ~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~------~- 313 (523)
.++ +||+|+|+..+.....+|. +.+| |+||+|+.+-.+..+.+.....||+|.+-|.....+ +
T Consensus 294 ~rl--lEysev~~~~~~~~~s~~~------~~~~--n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~ 363 (472)
T COG4284 294 LRL--LEYSEVPNEHREEFTSDGK------LKYF--NTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTA 363 (472)
T ss_pred eEE--EEEecCChhHhhhhccccc------eeee--ccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccc
Confidence 777 9999999998766555444 4466 888888888777766666556789887766332221 1
Q ss_pred cccCcchhhh-hh-ccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 009878 314 SFKSSTRLEC-MM-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGA 391 (523)
Q Consensus 314 ~~~~~~rLE~-~m-~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~ 391 (523)
..++..+||. |+ +|.+.+-+ ..+.++..|||..||+|+||-.+.. .
T Consensus 364 i~~~i~kfe~~FI~fDlF~~~s-~~~~~~~~vpR~~~f~Plkn~~~~~--------~----------------------- 411 (472)
T COG4284 364 IGKNISKFENEFIPFDLFLYKS-DENGGLLLVPRFGEFSPLKNLEGSH--------F----------------------- 411 (472)
T ss_pred cccchhhccccccceeeeEEEe-cCCCceEeccccCCCCchhhccCCC--------C-----------------------
Confidence 1234568895 99 99765532 2567889999999999999888641 1
Q ss_pred cccCCcccccCCeeecCCCeEEEcCCcCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEe
Q 009878 392 QVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRV 471 (523)
Q Consensus 392 ~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i 471 (523)
.+.+.+..+++..|.|.+..+++|+|++.|++|++|+ .|.+..++.|
T Consensus 412 ----------------------------~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk-----~~~e~~~l~~ 458 (472)
T COG4284 412 ----------------------------DNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK-----YASENTSLCI 458 (472)
T ss_pred ----------------------------CcHHhhhcccccccchhhhccceecCceEeeecceee-----ecCCCceEec
Confidence 1344555566777789999999999999999999999 7888899999
Q ss_pred CC--eeEccc
Q 009878 472 GG--KVQNKG 479 (523)
Q Consensus 472 ~~--~v~N~g 479 (523)
++ +++|.-
T Consensus 459 ~~~s~~e~~i 468 (472)
T COG4284 459 PNKSFLENVI 468 (472)
T ss_pred cCCeeeeeee
Confidence 98 666543
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.1e-62 Score=495.50 Aligned_cols=264 Identities=31% Similarity=0.366 Sum_probs=233.0
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhC
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 118 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~ 118 (523)
+|+|+||||+|||||++.||+++|+.+++|+||||+++++|++++.++.. ...|||+||||++||+.|++||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~-----~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLY-----SCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhc-----CCCCCEEEEcCchhHHHHHHHHHHc
Confidence 68999999999999999999999999899999999999999999998832 1279999999999999999999998
Q ss_pred CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcccc
Q 009878 119 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 198 (523)
Q Consensus 119 ~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~ 198 (523)
+ ++.++|++|+|+++||++. +|...+ +++++++|+|+||||+|.+|+.+|+|++|+++|++|++|+|+||+|+.
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~~-~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKND-DDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred C---CCCCceEEEEeCCceEEeC-CCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 8 5678999999999999975 565555 667789999999999999999999999999999999999999999999
Q ss_pred ccchHHhHHHhhcCccceeeeccCCcccc-cCcEEEEecCC-CceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCcc
Q 009878 199 KAIPASLGVSATKQYHVNSLAVPRKAKEA-IGGITRLTHAD-GRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 276 (523)
Q Consensus 199 ~~dp~~lG~~~~~~~~~~~~vv~r~~~e~-~G~i~~~~~~~-G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~g 276 (523)
++||.++||++.+++++++++|+|+..|. +|++|.. + |+..+ |||+|+++++++++..++++.+.+++++++|
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~---~~g~~~~--vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIAN---INGRVQL--LEYDQIKKLLKQKMVNNQIPKDIDDAPFFLF 224 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEe---cCCCEEE--EEeccCCHHHHhccccccCcCCCCceeeccc
Confidence 89999999999999999999999976655 5555654 4 87655 9999999999988877777766677899999
Q ss_pred ceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEEecccceeecccC
Q 009878 277 NINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKN 354 (523)
Q Consensus 277 Ninnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn 354 (523)
|||||||+|++|+++++ |++++|+ +...++|+|++||+||||
T Consensus 225 n~~~~~~~l~~l~~~~~---------------------------------d~~~~~~---~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 225 NTNNLINFLVEFKDRVD---------------------------------DIIEFTD---DIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred eEEEEEEEHHHHHHHHH---------------------------------HHHhccC---ceEEEEeCchhccccCCC
Confidence 99999999999988874 5555553 335569999889999998
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=3.8e-07 Score=96.10 Aligned_cols=274 Identities=19% Similarity=0.169 Sum_probs=173.4
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
.+.+|+||-|+||||.++.||.+-|+. |||.+++.++....+ ..--++.--++-.+..++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~va---GkpMl~hVi~~a~~l-------------~~~~i~vVvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPVA---GKPMLEHVIDAARAL-------------GPDDIVVVVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhcc---CccHHHHHHHHHhhc-------------CcceEEEEEcCCHHHHHHHhcc
Confidence 467899999999999999999999996 999999999998877 2333444557888888888864
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCce-EEEEEeCCCcc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQDTNGL 196 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~-yi~v~~vDN~L 196 (523)
.. ++.|+.|. .|.|.|....+.. + .+.++++ .+.|.+-|-+|
T Consensus 66 ~~-------~v~~v~Q~------------------------eqlGTgHAV~~a~-----~-~l~~~~~g~vLVl~GD~PL 108 (460)
T COG1207 66 RD-------DVEFVLQE------------------------EQLGTGHAVLQAL-----P-ALADDYDGDVLVLYGDVPL 108 (460)
T ss_pred cc-------CceEEEec------------------------ccCChHHHHHhhh-----h-hhhcCCCCcEEEEeCCccc
Confidence 32 34444442 3567777666542 2 3445565 67777788888
Q ss_pred ccccch-HHhHHHhhcCccceeeeccC-CcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCC
Q 009878 197 LFKAIP-ASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 274 (523)
Q Consensus 197 ~~~~dp-~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f 274 (523)
...--. .++..+..++..++..+..- .|. -.|-|++ +.+|+.. ..||..+-+++-++ +.
T Consensus 109 it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIvr--~~~g~V~-~IVE~KDA~~eek~-------I~-------- 169 (460)
T COG1207 109 ITAETLEELLAAHPAHGAAATVLTAELDDPT-GYGRIVR--DGNGEVT-AIVEEKDASEEEKQ-------IK-------- 169 (460)
T ss_pred CCHHHHHHHHHhhhhcCCceEEEEEEcCCCC-CcceEEE--cCCCcEE-EEEEcCCCCHHHhc-------Cc--------
Confidence 764322 48888888888888777764 332 3455665 4456643 23999887666432 11
Q ss_pred ccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCC-CCceeEEEecccceeeccc
Q 009878 275 PGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPP-SAKVGFTVMDTWLAYAPVK 353 (523)
Q Consensus 275 ~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~-~~~vg~~~v~R~~~FsPvK 353 (523)
-.|+..+.|+-+.+.+.|.+- -|- ..|=|--.-|++..+.. ..++..+.++..+++.=|.
T Consensus 170 eiNtGiy~f~~~~L~~~L~~l-------~nn------------NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN 230 (460)
T COG1207 170 EINTGIYAFDGAALLRALPKL-------SNN------------NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVN 230 (460)
T ss_pred EEeeeEEEEcHHHHHHHHHHh-------ccc------------cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcC
Confidence 239999999999999888751 110 11223333444444321 2345555666677777776
Q ss_pred CCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcC
Q 009878 354 NNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKP 416 (523)
Q Consensus 354 n~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p 416 (523)
+--.++ .++.-+-+.-...+-.+|+.+-+|... +-...++.++-+.+.|
T Consensus 231 ~R~qLa-------------~~e~~~q~r~~~~~m~~GVtl~dP~t~-~i~~dv~ig~DvvI~p 279 (460)
T COG1207 231 DRVQLA-------------EAERIMQRRIAEKLMLAGVTLIDPATT-YIRGDVEIGRDVVIEP 279 (460)
T ss_pred cHHHHH-------------HHHHHHHHHHHHHHHHcCcEEeCCCeE-EEcCcEEECCceEEec
Confidence 655553 344444444445566889988766542 2222334444444443
No 14
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.73 E-value=3.2e-07 Score=96.95 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=118.1
Q ss_pred cceEEEEecCCCCccCCc---CCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHH
Q 009878 37 KNAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 112 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~ 112 (523)
+++-+|+||||.||||.. +.||.++|+. |+ +++++.++.+.+. .+--+++...+..+.+.
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~---gk~pli~~~l~~l~~~-------------Gi~~i~iv~~~~~~~i~ 65 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFG---GKYRIIDFTLSNCANS-------------GIDTVGVLTQYQPLELN 65 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeC---CceeehhHHHHHHHhC-------------CCCEEEEEecCCHHHHH
Confidence 467899999999999986 7899999996 89 8999999998764 34444444567889999
Q ss_pred HHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 113 ~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
++|++...|++...+ +.+..+- ... .. .-...|.|.|+...... +.+....-++++|.+-
T Consensus 66 ~~~~~~~~~~~~~~~------~~~~i~~-----~~~--~~--~~~~~~~Gta~al~~a~-----~~l~~~~~~~~lV~~g 125 (380)
T PRK05293 66 NHIGIGSPWDLDRIN------GGVTILP-----PYS--ES--EGGKWYKGTAHAIYQNI-----DYIDQYDPEYVLILSG 125 (380)
T ss_pred HHHhCCCcccccCCC------CCEEEeC-----Ccc--cC--CCCcccCCcHHHHHHHH-----HHHHhCCCCEEEEecC
Confidence 999877667764221 1111100 000 00 00112468877655442 2232222367888889
Q ss_pred CCccccccchHHhHHHhhcCccceeeeccC--CcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCC
Q 009878 193 TNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 270 (523)
Q Consensus 193 DN~L~~~~dp~~lG~~~~~~~~~~~~vv~r--~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g 270 (523)
|+ +.....-.++-.|..+++++++.+... ....+.|.+.. +.+|+. .++.|=|.. +.
T Consensus 126 D~-l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~g~V----~~~~eKp~~------~~-------- 184 (380)
T PRK05293 126 DH-IYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNT--DENMRI----VEFEEKPKN------PK-------- 184 (380)
T ss_pred CE-EEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEE--CCCCcE----EEEEeCCCC------CC--------
Confidence 98 444333456777777778765544321 12234565543 334543 334332110 10
Q ss_pred CCCCccceeeEEEehhhhHHHHh
Q 009878 271 YSPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 271 ~~~f~gNinnl~~~l~~~~~~l~ 293 (523)
+. ..|+..+.|+-+.+.+.+.
T Consensus 185 -~~-~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 185 -SN-LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred -cc-eeeeEEEEEcHHHHHHHHH
Confidence 11 2489999999887666654
No 15
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.70 E-value=3.8e-07 Score=97.63 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=123.3
Q ss_pred hhcceEEEEecCCCCccCC---cCCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHH
Q 009878 35 EAKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 110 (523)
Q Consensus 35 ~l~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~ 110 (523)
+..++.+|+||||.||||. .+.||.++|+. |+ +++++.++.+... ++--+++...+..+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~---gk~plI~~~L~~l~~~-------------Gi~~i~iv~~~~~~~ 65 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFG---GSYRLIDFVLSNLVNS-------------GYLRIYVLTQYKSHS 65 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeC---CcceEhHHHHHHHHHC-------------CCCEEEEEeccCHHH
Confidence 4568899999999999999 78999999996 88 9999999998765 466666666788999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEE
Q 009878 111 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 190 (523)
Q Consensus 111 t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~ 190 (523)
+.++|.+. +++....+.++.+ .|. .+. .-...|.|.||..... ++.+....-+++++.
T Consensus 66 i~~~~~~~--~~~~~~~~~~~~~--~~~------------~~~-~~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~ 123 (407)
T PRK00844 66 LDRHISQT--WRLSGLLGNYITP--VPA------------QQR-LGKRWYLGSADAIYQS-----LNLIEDEDPDYVVVF 123 (407)
T ss_pred HHHHHHhC--cCccccCCCeEEE--CCc------------ccC-CCCCcccCCHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 99999743 3322111111100 000 000 0112367888876554 233433344688888
Q ss_pred eCCCccccccchHHhHHHhhcCccceeeecc--CCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccC
Q 009878 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 268 (523)
Q Consensus 191 ~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~--r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~ 268 (523)
+-|+ +.....-.++-+|..+++++++.+.. .......|.+.. +.+|+. .++.|=|.... .... .
T Consensus 124 ~gD~-v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~--d~~g~v----~~~~eKp~~~~------~~~~-~ 189 (407)
T PRK00844 124 GADH-VYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEV--DPDGRI----RGFLEKPADPP------GLPD-D 189 (407)
T ss_pred cCCE-EEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEE--CCCCCE----EEEEECCCCcc------cccC-C
Confidence 8887 44443346788888888887665532 223334565543 335643 23322221100 0000 0
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhh
Q 009878 269 TGYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 269 ~g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
.+. ...|+..+.|+-+.+.+.+.+
T Consensus 190 ~~~--~~~~~Giyi~~~~~l~~~l~~ 213 (407)
T PRK00844 190 PDE--ALASMGNYVFTTDALVDALRR 213 (407)
T ss_pred CCC--cEEEeEEEEEeHHHHHHHHHH
Confidence 001 125889999998876666653
No 16
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.70 E-value=2.9e-07 Score=96.93 Aligned_cols=157 Identities=9% Similarity=0.080 Sum_probs=100.9
Q ss_pred ceEEEEecCCCCccCCc---CCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchH-HHH
Q 009878 38 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS-RTQ 112 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e-~t~ 112 (523)
++.+|+||||.||||.. +.||+++|+. |+ ++++++++.+.+. .+--+++...+.++ .++
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~---gk~PlIe~~l~~L~~~-------------Gi~~I~iv~~~~~~~~I~ 65 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG---GRYRLIDFPLSNMVNA-------------GIRNVFIFFKNKERQSLF 65 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC---CeeeEEEEEhhhhhcc-------------CCCEEEEEeCCCcHHHHH
Confidence 57789999999999984 8999999996 99 8999999999775 46666666666665 999
Q ss_pred HHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 113 ~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
+||.+...||++..+ ..+..+ .. . ...|-|.|+.+..... .+.+...+-+.+++.+-
T Consensus 66 ~~l~~~~~~~~~~~~------~~~~~~-------~~--~-----e~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnG 122 (369)
T TIGR02092 66 DHLGSGREWDLHRKR------DGLFVF-------PY--N-----DRDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNS 122 (369)
T ss_pred HHHhCCCCCCccccc------CcEEEE-------ec--c-----CCCCcccChHHHHHHH---HHHHHhCCCCEEEEECC
Confidence 999876677765221 111110 00 1 1234455665433221 22232223368888999
Q ss_pred CCccccccchHHhHHHhhcCccceeeeccCC--cccccCcEEEE
Q 009878 193 TNGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRL 234 (523)
Q Consensus 193 DN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~--~~e~~G~i~~~ 234 (523)
|+ +.....-.++-+|.++++++++.+.+-. .....|+++..
T Consensus 123 D~-l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~ 165 (369)
T TIGR02092 123 HM-VCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165 (369)
T ss_pred CE-EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEE
Confidence 97 5554444678888888888766654422 22345665544
No 17
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.69 E-value=3.5e-06 Score=91.19 Aligned_cols=183 Identities=17% Similarity=0.177 Sum_probs=104.3
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~ 116 (523)
.+.+|+||||.||||+.+.||.++|+. |+|++++.++.+.+. .+. ++|.++ +..+.+.+++.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------~~~~iivv~~-~~~~~i~~~~~ 67 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLL---GEPMLRFVYRALRPL-------------FGDNVWTVVG-HRADMVRAAFP 67 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccC---CCcHHHHHHHHHHhc-------------CCCcEEEEEC-CCHHHHHHhcc
Confidence 578999999999999988999999996 999999999988653 233 444444 45566666553
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+. ++.+ +. . ..|.|.|+..... ++.|.+.+.+++++.+.|.++
T Consensus 68 ~~--------~~~~----------------v~--~------~~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~ 110 (456)
T PRK14356 68 DE--------DARF----------------VL--Q------EQQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPL 110 (456)
T ss_pred cc--------CceE----------------EE--c------CCCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCccc
Confidence 21 1111 11 1 1244555433322 344544466889999999876
Q ss_pred ccccc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCc
Q 009878 197 LFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275 (523)
Q Consensus 197 ~~~~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~ 275 (523)
....+ -.++..+. +.+..+.+.+-......|.+.. .+|+..- .+|-..+++.... + . ...
T Consensus 111 i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~---~~g~V~~-~~ek~~~~~~~~~---~---------~-~~~ 171 (456)
T PRK14356 111 VTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR---RNGHVAA-IVEAKDYDEALHG---P---------E-TGE 171 (456)
T ss_pred CCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE---cCCeEEE-EEECCCCChHHhh---h---------h-cCe
Confidence 54322 22333332 4455544444222234665432 3665421 1444333222110 0 0 012
Q ss_pred cceeeEEEehhhhHHHHh
Q 009878 276 GNINQLILELGPYMEELK 293 (523)
Q Consensus 276 gNinnl~~~l~~~~~~l~ 293 (523)
.|++..+|+-+.+.+.+.
T Consensus 172 ~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 172 VNAGIYYLRLDAVESLLP 189 (456)
T ss_pred EEEEEEEEEHHHHHHHHH
Confidence 488899999887665554
No 18
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=98.64 E-value=8.4e-07 Score=91.16 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=100.9
Q ss_pred ceEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~ 113 (523)
.+.+|+||||.||||.. ..||.++|+. ||+++++.++.+... .+. ++|++.....+.+.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~---gkPmI~~~l~~l~~a-------------Gi~~I~ii~~~~~~~~~~~ 66 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIY---DKPMIYYPLSTLMLA-------------GIRDILIISTPQDTPRFQQ 66 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEecCCchHHHHH
Confidence 46789999999999985 8899999996 999999999998764 344 444666666677899
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
+|.+...||+. +.+. .+..|.|.|+.+....+ ++. +-+++. ..-|
T Consensus 67 ~l~~g~~~g~~---i~y~------------------------~q~~~~Gta~Al~~a~~------~i~-~~~~~l-v~gD 111 (292)
T PRK15480 67 LLGDGSQWGLN---LQYK------------------------VQPSPDGLAQAFIIGEE------FIG-GDDCAL-VLGD 111 (292)
T ss_pred HHcCccccCce---eEEE------------------------ECCCCCCHHHHHHHHHH------HhC-CCCEEE-EECC
Confidence 99876667763 2221 12237788888765432 332 224554 4588
Q ss_pred CccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCc
Q 009878 194 NGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 240 (523)
Q Consensus 194 N~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~ 240 (523)
|.+.......++-.|.+++.+.++-+++....++.|++.. +.+|+
T Consensus 112 ~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~--d~~g~ 156 (292)
T PRK15480 112 NIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF--DQNGT 156 (292)
T ss_pred eeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEE--CCCCc
Confidence 8654444456788787777777665555433356787543 33554
No 19
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.59 E-value=1.2e-05 Score=86.26 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=109.5
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+...||.++|+. |++++++.++++++. .-..+|+++ +..+.+.+++.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi~---gkPli~~~i~~l~~~-------------~~~i~Ivv~-~~~~~i~~~~~~ 64 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTIC---GKPMLFYILKEAFAI-------------SDDVHVVLH-HQKERIKEAVLE 64 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEEC---CccHHHHHHHHHHHc-------------CCcEEEEEC-CCHHHHHHHHHh
Confidence 356899999999999998999999996 999999999998764 113455555 557888888875
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
. ++ .+.+..|+ ...+.|.|+.+..+. ..-+++++.+.|+++.
T Consensus 65 ~--~~----~v~~~~~~----------------------~~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~~ 106 (430)
T PRK14359 65 Y--FP----GVIFHTQD----------------------LENYPGTGGALMGIE----------PKHERVLILNGDMPLV 106 (430)
T ss_pred c--CC----ceEEEEec----------------------CccCCCcHHHHhhcc----------cCCCeEEEEECCccCC
Confidence 3 11 23332221 123456666554321 1246889999998653
Q ss_pred cccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccc
Q 009878 198 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 277 (523)
Q Consensus 198 ~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gN 277 (523)
++..+-.+.+.+.++.+.+++.......|.+.. .+|+.. ..+|...... .+.. .+..|
T Consensus 107 ---~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~---d~g~v~-~i~e~~~~~~---------~~~~------~~~~~ 164 (430)
T PRK14359 107 ---EKDELEKLLENDADIVMSVFHLADPKGYGRVVI---ENGQVK-KIVEQKDANE---------EELK------IKSVN 164 (430)
T ss_pred ---CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEE---cCCeEE-EEEECCCCCc---------cccc------ceEEE
Confidence 556666666667776665555322223565432 356432 1144432210 0110 11248
Q ss_pred eeeEEEehhhhHHHHh
Q 009878 278 INQLILELGPYMEELK 293 (523)
Q Consensus 278 innl~~~l~~~~~~l~ 293 (523)
+..++|+-+.+.+.+.
T Consensus 165 ~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 165 AGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEEEEHHHHHHHHH
Confidence 8889999987776554
No 20
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.58 E-value=1.7e-06 Score=93.20 Aligned_cols=207 Identities=11% Similarity=0.088 Sum_probs=122.4
Q ss_pred hcceEEEEecCCCCccCCc---CCCcccccccCCCCcc-hHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHH
Q 009878 36 AKNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTC-FLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 111 (523)
Q Consensus 36 l~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks-fL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t 111 (523)
-.++.+|+||||.||||.. ..||.++|+. |++ ++++.++++.+. .+.-+++...+..+.+
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~---gkp~lI~~~l~~l~~~-------------Gi~~i~vv~~~~~~~i 76 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFG---GKFRIIDFALSNCINS-------------GIRRIGVLTQYKAHSL 76 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEEC---CEEEEhHHHHHHHHHC-------------CCCeEEEEecCCHHHH
Confidence 3579999999999999985 7999999996 896 999999998764 3444444555788999
Q ss_pred HHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEe
Q 009878 112 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 191 (523)
Q Consensus 112 ~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~ 191 (523)
.++|.+. +++.+.++ ...+ .++.+......+..|.|.|+...... +.+....-++++|.+
T Consensus 77 ~~~~~~~--~~~~~~~~----~~~i---------~i~~~~~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~lVl~ 136 (425)
T PRK00725 77 IRHIQRG--WSFFREEL----GEFV---------DLLPAQQRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVVILA 136 (425)
T ss_pred HHHHHhh--hcccccCC----CCeE---------EEeCCcccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEec
Confidence 9999753 33211100 0000 01101111122345789888766542 334333346788888
Q ss_pred CCCccccccchHHhHHHhhcCccceeeeccC--CcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCC
Q 009878 192 DTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 192 vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r--~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
-|+ +.....-.++-+|.++++++.+.+... ......|.+.. +.+|+. .++.|=|.... ......
T Consensus 137 gD~-l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~~~V----~~~~EKp~~~~-------~~~~~~ 202 (425)
T PRK00725 137 GDH-IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAV--DENDRI----TAFVEKPANPP-------AMPGDP 202 (425)
T ss_pred CCe-EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEE--CCCCCE----EEEEECCCCcc-------ccccCc
Confidence 898 554433467888888888887766442 22334565543 334543 33333111100 000000
Q ss_pred CCCCCccceeeEEEehhhhHHHHhh
Q 009878 270 GYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
. .+..|+....|+-+.+.+.|.+
T Consensus 203 ~--~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 203 D--KSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred c--ceEEEeeEEEEeHHHHHHHHHH
Confidence 0 1135999999999877766643
No 21
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=98.55 E-value=1.9e-06 Score=88.32 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=98.1
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~ 116 (523)
+|+||||.||||.. ..||.++|+. ||+++++.++.+... .|. ++|.+..+..+.++++|.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~---gkPmI~~~L~~l~~a-------------Gi~~I~iv~~~~~~~~~~~~lg 65 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSTLMLA-------------GIRDILIISTPQDTPRFQQLLG 65 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC---CEEhHHHHHHHHHHC-------------CCCEEEEEecCCcHHHHHHHhc
Confidence 58999999999975 8999999996 999999999998754 344 445676777788899998
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
....||++ +.+.. +..|.|.|+.+..... ++. +-.++ +...||++
T Consensus 66 ~g~~~g~~---i~~~~------------------------q~~~~Gta~al~~a~~------~l~-~~~~~-li~gD~i~ 110 (286)
T TIGR01207 66 DGSQWGVN---LSYAV------------------------QPSPDGLAQAFIIGED------FIG-GDPSA-LVLGDNIF 110 (286)
T ss_pred cccccCce---EEEEE------------------------ccCCCCHHHHHHHHHH------HhC-CCCEE-EEECCEec
Confidence 76667753 32211 2256788887765432 222 12355 44688866
Q ss_pred ccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCc
Q 009878 197 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 240 (523)
Q Consensus 197 ~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~ 240 (523)
.......++-.+.+++.+.++-+.+....++.|++.. +.+|+
T Consensus 111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~--d~~g~ 152 (286)
T TIGR01207 111 YGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEF--DSNGR 152 (286)
T ss_pred cccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEE--CCCCe
Confidence 4333355677777777777666655433356786653 33554
No 22
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.52 E-value=1.8e-06 Score=84.18 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=87.5
Q ss_pred EEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHH
Q 009878 40 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELL 115 (523)
Q Consensus 40 avvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l 115 (523)
-+|+||||.||||+ ...||+++|+. |++++++.++.+.+. ++. ++|.|. +..+.++++|
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi~---g~piI~~~l~~l~~~-------------Gi~~I~iv~~-~~~~~i~~~l 64 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPLA---NVPLIDYTLEFLALN-------------GVEEVFVFCC-SHSDQIKEYI 64 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEEC---CEehHHHHHHHHHHC-------------CCCeEEEEeC-CCHHHHHHHH
Confidence 36899999999998 47899999996 999999999988764 343 455555 5788999999
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCc
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 195 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~ 195 (523)
++..++++... ...+..+ . ...+.|.|+.+..+...+.+ .+.+.+.+-|+
T Consensus 65 ~~~~~~~~~~~------~~~i~~~--------~--------~~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~- 114 (217)
T cd04197 65 EKSKWSKPKSS------LMIVIII--------M--------SEDCRSLGDALRDLDAKGLI-------RGDFILVSGDV- 114 (217)
T ss_pred hhccccccccC------cceEEEE--------e--------CCCcCccchHHHHHhhcccc-------CCCEEEEeCCe-
Confidence 98766654311 0011111 1 11245667777665443322 23455777887
Q ss_pred cccccchHHhHHHhhc-----Cccceeeecc
Q 009878 196 LLFKAIPASLGVSATK-----QYHVNSLAVP 221 (523)
Q Consensus 196 L~~~~dp~~lG~~~~~-----~~~~~~~vv~ 221 (523)
+...-.-.++.+|.++ ++++++.+.+
T Consensus 115 i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~ 145 (217)
T cd04197 115 VSNIDLKEILEEHKERRKKDKNAIMTMVLKE 145 (217)
T ss_pred eeccCHHHHHHHHHHhhccccCceEEEEEEe
Confidence 4433233577888763 6777665444
No 23
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.50 E-value=3.2e-06 Score=83.15 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=108.4
Q ss_pred EEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 40 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 40 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
-+|+||||.||||+. ..||.++|+. |++++++.++.+... .+.-++....+.++.+.+++.
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~~-------------g~~~v~iv~~~~~~~~~~~l~ 65 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEFC---NKPMIEHQIEALAKA-------------GVKEIILAVNYRPEDMVPFLK 65 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEEeeeCHHHHHHHHh
Confidence 368999999999974 7899999996 999999999998764 344444444567788899987
Q ss_pred hCC-CCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCc
Q 009878 117 SNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 195 (523)
Q Consensus 117 ~~~-~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~ 195 (523)
+.. .+|+ . +.. .....|.|.|+.+.... +.+ ...-+-+.+.+.|+
T Consensus 66 ~~~~~~~~-----~----------------i~~------~~~~~~~G~~~al~~a~-----~~~-~~~~~~~lv~~~D~- 111 (233)
T cd06425 66 EYEKKLGI-----K----------------ITF------SIETEPLGTAGPLALAR-----DLL-GDDDEPFFVLNSDV- 111 (233)
T ss_pred cccccCCe-----E----------------EEe------ccCCCCCccHHHHHHHH-----HHh-ccCCCCEEEEeCCE-
Confidence 431 1221 1 111 01123567776555432 223 22112245666776
Q ss_pred cccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecC-CCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCC
Q 009878 196 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHA-DGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 274 (523)
Q Consensus 196 L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~-~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f 274 (523)
+.......++.++.+++++.++.+.+.......|.+.. +. +|+ + +++.|=|.. + . +.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~~--v--~~~~ekp~~------~---~------~~- 169 (233)
T cd06425 112 ICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVH--DENTGR--I--ERFVEKPKV------F---V------GN- 169 (233)
T ss_pred eeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEE--cCCCCE--E--EEEEECCCC------C---C------CC-
Confidence 44433457888899899998888876544445676543 22 343 3 455332111 0 0 11
Q ss_pred ccceeeEEEehhhh
Q 009878 275 PGNINQLILELGPY 288 (523)
Q Consensus 275 ~gNinnl~~~l~~~ 288 (523)
..|++.++|+-+.+
T Consensus 170 ~~~~Giyi~~~~~l 183 (233)
T cd06425 170 KINAGIYILNPSVL 183 (233)
T ss_pred EEEEEEEEECHHHH
Confidence 24899999998754
No 24
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.50 E-value=2.3e-06 Score=92.54 Aligned_cols=219 Identities=14% Similarity=0.154 Sum_probs=125.9
Q ss_pred cceEEEEecCCCCccCC---cCCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHH
Q 009878 37 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 112 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~ 112 (523)
.++.+|+||||.||||. ...||.++|+. |+ +++++.++.+... .+.-+++...+..+.+.
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~---g~~plId~~L~~l~~~-------------Gi~~i~iv~~~~~~~i~ 65 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIG---GNYRLIDIPMSNCINS-------------GINKIYVLTQFNSASLN 65 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeC---CcceEehHHHHHHHhC-------------CCCEEEEEeccCHHHHH
Confidence 46889999999999998 58999999996 75 9999999988654 45656666677889999
Q ss_pred HHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 113 ~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
++|++..+|+.... +.++.+..+ . +.....-...|.|.||....... .+++...++-+++++.+-
T Consensus 66 ~~l~~~~~~~~~~~----~~~~~~~i~--------~-~~q~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~g 130 (436)
T PLN02241 66 RHLSRAYNFGNGGN----FGDGFVEVL--------A-ATQTPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSG 130 (436)
T ss_pred HHHhccCCCCCCcc----cCCCCEEEc--------C-CcccCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecC
Confidence 99985433443211 111111111 0 00000111258899887765432 122221112478889989
Q ss_pred CCccccccchHHhHHHhhcCccceeeecc--CCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCC-CCCC---c
Q 009878 193 TNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFP-DGDV---N 266 (523)
Q Consensus 193 DN~L~~~~dp~~lG~~~~~~~~~~~~vv~--r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~-~g~~---~ 266 (523)
|+ +.....-.++-+|.++++++++-+.+ +......|++.. +.+|+. +++.|-|.......-+ +..+ .
T Consensus 131 D~-v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~--d~~~~v----~~~~Ekp~~~~~~~~~~~~~~~~~~ 203 (436)
T PLN02241 131 DH-LYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI--DDTGRI----IEFSEKPKGDELKAMQVDTTVLGLS 203 (436)
T ss_pred Ce-EEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE--CCCCCE----EEEEECCCCcccccccccccccccc
Confidence 98 55444456788888888887655443 222355676543 334543 5555543210000000 0000 0
Q ss_pred --cCCCCCCCccceeeEEEehhhhHHHHhh
Q 009878 267 --CETGYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 267 --~~~g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
+.+..+ .-.|+....|+-+.+..+++.
T Consensus 204 ~~~~~~~~-~~~~~GIyi~~~~~l~~ll~~ 232 (436)
T PLN02241 204 PEEAKEKP-YIASMGIYVFKKDVLLKLLRW 232 (436)
T ss_pred cccccccc-eEEEeEEEEEEHHHHHHHHHh
Confidence 000001 135899999998877666653
No 25
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.49 E-value=7.1e-07 Score=88.03 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=117.1
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccE-EEEcCccchHHHHHHH
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPF-AIMTSDDTHSRTQELL 115 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl-~IMtS~~T~e~t~~~l 115 (523)
.|+||||.||||. .+.||.++|+. |+ +++++.++++... ++-- ++.+..+..+.+.+++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i~---g~~pli~~~l~~l~~~-------------g~~~ii~V~~~~~~~~i~~~~ 65 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPIG---GKYPLIDYVLENLANA-------------GIKEIIVVVNGYKEEQIEEHL 65 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEET---TEEEHHHHHHHHHHHT-------------TCSEEEEEEETTTHHHHHHHH
T ss_pred EEEECCCCCccCchhhhccccccceec---CCCcchhhhhhhhccc-------------CCceEEEEEeecccccccccc
Confidence 4788999999997 57899999996 88 9999999999774 3343 6777777888999999
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCC-ceEEEEEeCCC
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG-LKWVLFFQDTN 194 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G-~~yi~v~~vDN 194 (523)
++...+++ +|.+. ....|.|.|+....+. +.+.... -+++.+.+.|+
T Consensus 66 ~~~~~~~~---~i~~i------------------------~~~~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD~ 113 (248)
T PF00483_consen 66 GSGYKFGV---KIEYI------------------------VQPEPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGDI 113 (248)
T ss_dssp TTSGGGTE---EEEEE------------------------EESSSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTEE
T ss_pred cccccccc---cceee------------------------ecccccchhHHHHHHH-----HHhhhccccceEEEEeccc
Confidence 97655552 12221 1223337777776652 2232222 24688998887
Q ss_pred ccccccchHHhHHHhhcCcc--ceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCC
Q 009878 195 GLLFKAIPASLGVSATKQYH--VNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 272 (523)
Q Consensus 195 ~L~~~~dp~~lG~~~~~~~~--~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~ 272 (523)
+.......++-.|..++.+ +.+..++.....+.|.+.. +.+|+. +++-|=|... .. +
T Consensus 114 -i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~V----~~~~EKP~~~---------~~-----~ 172 (248)
T PF00483_consen 114 -IFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGRV----IRIVEKPDNP---------NA-----S 172 (248)
T ss_dssp -EESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSEE----EEEEESCSSH---------SH-----S
T ss_pred -cccchhhhHHHhhhccccccccccccccccccccceeeee--ccceeE----EEEeccCccc---------cc-----c
Confidence 5555446788899988884 4444445445556675543 344643 3332211110 00 1
Q ss_pred CCccceeeEEEehhhhHHHHh
Q 009878 273 PFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 273 ~f~gNinnl~~~l~~~~~~l~ 293 (523)
. -.|+...+|+-+.+...++
T Consensus 173 ~-~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 173 N-LINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp S-EEEEEEEEEETHHHHHHHH
T ss_pred e-eccCceEEEcchHHHHHhh
Confidence 1 2589999999887665543
No 26
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.48 E-value=3.4e-06 Score=91.08 Aligned_cols=214 Identities=13% Similarity=0.105 Sum_probs=119.2
Q ss_pred ceEEEEecCCCCccCCc---CCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
++.+|+||||.||||.. +.||.++|+. |+ +++++.++.+... .+.-+++...+..+.+++
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~---gk~plI~~~L~~l~~~-------------Gi~~vivv~~~~~~~i~~ 66 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLA---GKYRLIDIPISNCINS-------------GINKIYVLTQFNSASLNR 66 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEEC---CeeEEeHHHHHHHHHC-------------CCCEEEEEecCCHHHHHH
Confidence 67899999999999984 8999999996 88 9999999988763 455555555578899999
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
+|.+..+++.... +.+. +........-...+.|.|+...... +.+....-++++|.+-|
T Consensus 67 ~l~~~~~~~~~~~-------g~~~---------i~~~~~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 67 HISQTYNFDGFSG-------GFVE---------VLAAQQTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGD 125 (429)
T ss_pred HHhcCcCccccCC-------CEEE---------EeCCcccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCC
Confidence 9986432221000 0000 1100000000112368888766543 23333334578888889
Q ss_pred CccccccchHHhHHHhhcCccceeeeccCCc--ccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCC----cc
Q 009878 194 NGLLFKAIPASLGVSATKQYHVNSLAVPRKA--KEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDV----NC 267 (523)
Q Consensus 194 N~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~--~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~----~~ 267 (523)
+ +.....-.++-+|.++++++++.+.+... ....|.+.. +.+|+.. ..+|..+-+..-.-+... .-+ .+
T Consensus 126 ~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~--d~~g~V~-~~~Ekp~~~~~~~~~~~~-s~~~~~~~~ 200 (429)
T PRK02862 126 Q-LYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKT--DDDGRIT-EFSEKPKGDELKAMAVDT-SRLGLSPEE 200 (429)
T ss_pred E-EEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEE--CCCCcEE-EEEECCCccccchhcccc-ccccccccc
Confidence 8 55433345777888888887776644222 234565433 3345432 124443211000000000 000 00
Q ss_pred CCCCCCCccceeeEEEehhhhHHHHhh
Q 009878 268 ETGYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 268 ~~g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
....+ +-.|+..+.|+-+.+.+.+..
T Consensus 201 ~~~~~-~~~n~Giyi~~~~vl~~~l~~ 226 (429)
T PRK02862 201 AKGKP-YLASMGIYVFSRDVLFDLLNK 226 (429)
T ss_pred CCCCc-eEEEEEEEEEcHHHHHHHHHH
Confidence 00011 124888899998877666654
No 27
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.2e-06 Score=92.46 Aligned_cols=142 Identities=16% Similarity=0.201 Sum_probs=101.7
Q ss_pred eEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 39 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 39 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
+-+|+||||.||||. .+.||.++|+. ++++++++++.+.+. .+--++++..+..+.+.++|
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~---gkPii~~~l~~L~~~-------------Gv~eivi~~~y~~~~i~~~~ 65 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIA---GKPLIEYVLEALAAA-------------GVEEIVLVVGYLGEQIEEYF 65 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeC---CccHHHHHHHHHHHC-------------CCcEEEEEeccchHHHHHHH
Confidence 457899999999998 48999999997 999999999999764 57888888999999999999
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCc
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 195 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~ 195 (523)
++...+|++ |.+ ..+..|-|.|+......+ .+ +.+-+++.+-|+
T Consensus 66 ~d~~~~~~~---I~y------------------------~~e~~~lGTag~l~~a~~-----~l---~~~~f~v~~GDv- 109 (358)
T COG1208 66 GDGEGLGVR---ITY------------------------VVEKEPLGTAGALKNALD-----LL---GGDDFLVLNGDV- 109 (358)
T ss_pred hcccccCCc---eEE------------------------EecCCcCccHHHHHHHHH-----hc---CCCcEEEEECCe-
Confidence 987556653 222 223337888888777633 22 226667888887
Q ss_pred cccccchHHhHHHhhcCccceeeeccC-CcccccCcEEE
Q 009878 196 LLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITR 233 (523)
Q Consensus 196 L~~~~dp~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~ 233 (523)
+...-.-.++.++.+++...++..+.- .+ ...|++..
T Consensus 110 ~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~ 147 (358)
T COG1208 110 LTDLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVET 147 (358)
T ss_pred eeccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEEe
Confidence 443323557888888855555544442 33 55775543
No 28
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=98.47 E-value=3.8e-06 Score=80.77 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=108.1
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~ 116 (523)
+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+. ++|.|. +..+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~---g~pli~~~l~~l~~~-------------g~~~i~vv~~-~~~~~i~~~~~ 63 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIA---GKPILEYIIERLARA-------------GIDEIILVVG-YLGEQIEEYFG 63 (217)
T ss_pred CEEecCCccccccccccCCCccccEEC---CeeHHHHHHHHHHHC-------------CCCEEEEEec-cCHHHHHHHHc
Confidence 47899999999983 6899999995 999999999998764 233 444444 45678888887
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+...+|+. |.+.. + ..|.|.++...... +.+ .-+++.+.+.|+ +
T Consensus 64 ~~~~~~~~---i~~~~------------------~------~~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~-~ 107 (217)
T cd04181 64 DGSKFGVN---IEYVV------------------Q------EEPLGTAGAVRNAE-----DFL---GDDDFLVVNGDV-L 107 (217)
T ss_pred ChhhcCce---EEEEe------------------C------CCCCccHHHHHHhh-----hhc---CCCCEEEEECCe-e
Confidence 65434421 22110 0 12467666555442 222 356788888898 4
Q ss_pred ccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCcc
Q 009878 197 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 276 (523)
Q Consensus 197 ~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~g 276 (523)
.....-.++.++..+++++++.+.+.......|.+. + +.+|+. +++.|=+.. +. + ...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~-d~~~~v----~~~~ek~~~--------~~-------~-~~~ 165 (217)
T cd04181 108 TDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVE-L-DDDGRV----TRFVEKPTL--------PE-------S-NLA 165 (217)
T ss_pred cCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEE-E-cCCCcE----EEEEECCCC--------CC-------C-CEE
Confidence 444444566778888888887776654444456543 3 333543 334332110 00 0 124
Q ss_pred ceeeEEEehhhhHHHHh
Q 009878 277 NINQLILELGPYMEELK 293 (523)
Q Consensus 277 Ninnl~~~l~~~~~~l~ 293 (523)
|++..+|+-+.+ +.+.
T Consensus 166 ~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 166 NAGIYIFEPEIL-DYIP 181 (217)
T ss_pred EEEEEEECHHHH-Hhhh
Confidence 888899988644 4443
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=98.44 E-value=1.9e-06 Score=88.71 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=53.9
Q ss_pred ceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHH
Q 009878 38 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 38 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~ 114 (523)
.+.+|+||||.||||. ...||.++|+. |+++++++++.+... .+.-++....+..+.+.+|
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~---gkPiI~~vl~~l~~~-------------Gi~~ivivv~~~~~~i~~~ 66 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA-------------GIKEIVLVTHASKNAVENH 66 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEecCChHHHHHH
Confidence 4678999999999998 37899999996 999999999998764 4555666666788999999
Q ss_pred HHh
Q 009878 115 LES 117 (523)
Q Consensus 115 l~~ 117 (523)
|..
T Consensus 67 ~~~ 69 (297)
T TIGR01105 67 FDT 69 (297)
T ss_pred Hhc
Confidence 964
No 30
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=98.44 E-value=4.6e-06 Score=82.41 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=92.6
Q ss_pred EEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHH
Q 009878 40 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 40 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l 115 (523)
.+|+||||.||||+. ..||.++|+. +++++++.++.+.+. .+ .+++.++....+.+.++|
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~~-------------gi~~i~vv~~~~~~~~~~~~l 65 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLMLA-------------GIREILIISTPEDLPLFKELL 65 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHHHHHHHC-------------CCCEEEEEeCcchHHHHHHHH
Confidence 479999999999985 7899999996 999999999988653 34 455666666667889999
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCc
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 195 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~ 195 (523)
.....+++. |.+ . ....|.|.|+....... +.. + +..++.+.|++
T Consensus 66 ~~~~~~~~~---i~~----------------~--------~~~~~~G~~~al~~a~~------~~~-~-~~~lv~~gD~~ 110 (240)
T cd02538 66 GDGSDLGIR---ITY----------------A--------VQPKPGGLAQAFIIGEE------FIG-D-DPVCLILGDNI 110 (240)
T ss_pred hcccccCce---EEE----------------e--------eCCCCCCHHHHHHHHHH------hcC-C-CCEEEEECCEE
Confidence 865555532 211 0 01235677665543322 121 2 33456678875
Q ss_pred cccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCc
Q 009878 196 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 240 (523)
Q Consensus 196 L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~ 240 (523)
+.....-.++-.+.+++.++++.+.+....+..|.+.. +.+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~g~ 153 (240)
T cd02538 111 FYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEF--DENGR 153 (240)
T ss_pred EccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEe--cCCCc
Confidence 43332234566677777777766655333345675443 33554
No 31
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=98.41 E-value=7.3e-06 Score=82.24 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=98.2
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+.-+++...+..+.+.++|.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~---g~pii~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIG---GKPILWHIMKIYSHH-------------GINDFIICCGYKGYVIKEYFAN 65 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcCCCHHHHHHHHHh
Confidence 58899999999974 4899999996 999999988888654 4676777777889999999986
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
...++.. .++.+ +++...... ...++.. -....+..|.|+|+.+..... .+ +-+.+++.+-|+ +.
T Consensus 66 ~~~~~~~-~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~gt~~al~~~~~-----~i---~~e~flv~~gD~-i~ 130 (254)
T TIGR02623 66 YFLHMSD-VTFHM-ADNTMEVHH-KRVEPWR---VTLVDTGESTQTGGRLKRVRE-----YL---DDEAFCFTYGDG-VA 130 (254)
T ss_pred hhhcccC-eeEEe-ccccccccc-ccCCccc---eeeeecCCcCCcHHHHHHHHH-----hc---CCCeEEEEeCCe-Ee
Confidence 5433221 12222 222222211 0111000 001112356888887665432 12 234566888887 55
Q ss_pred cccchHHhHHHhhcCccceeeeccCCcccccCcEE
Q 009878 198 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 232 (523)
Q Consensus 198 ~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~ 232 (523)
....-.++-+|.+.++++++.+++ .....|.+.
T Consensus 131 ~~dl~~~~~~h~~~~~d~tl~~~~--~~~~yG~v~ 163 (254)
T TIGR02623 131 DIDIKALIAFHRKHGKKATVTAVQ--PPGRFGALD 163 (254)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEec--CCCcccEEE
Confidence 444446777888888888765553 234567654
No 32
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.41 E-value=3e-06 Score=81.54 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=90.1
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHH
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELL 115 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l 115 (523)
+|+||||.||||. .+.||.++|+. |+ +++++.++.+... ++- ++|.++ +..+.+.++|
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~-------------gi~~iivv~~-~~~~~i~~~~ 63 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFG---GRYRLIDFPLSNMVNS-------------GIRNVGVLTQ-YKSRSLNDHL 63 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEEC---CeeeeHHHHHHHHHHC-------------CCCEEEEEeC-CChHHHHHHH
Confidence 3889999999997 37999999996 88 9999999988763 333 455555 5588899999
Q ss_pred HhCCCCCCCCC--cEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 116 ESNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 116 ~~~~~fGl~~~--~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
.+...||++.. .+.+ +. +.. ......|.|.|+....... .+....-+.++|.+-|
T Consensus 64 ~~~~~~~~~~~~~~~~~----------------~~-~~~-~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD 120 (200)
T cd02508 64 GSGKEWDLDRKNGGLFI----------------LP-PQQ-RKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGD 120 (200)
T ss_pred hCCCcccCCCCCCCEEE----------------eC-ccc-CCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCC
Confidence 87666665411 1111 11 000 0123467788887665532 2333334677788888
Q ss_pred CccccccchHHhHHHhhcCccceeeec
Q 009878 194 NGLLFKAIPASLGVSATKQYHVNSLAV 220 (523)
Q Consensus 194 N~L~~~~dp~~lG~~~~~~~~~~~~vv 220 (523)
+ +.....-.++-++.+++.++++-+.
T Consensus 121 ~-v~~~~~~~~l~~~~~~~~~~t~~~~ 146 (200)
T cd02508 121 H-IYNMDYREMLDFHIESGADITVVYK 146 (200)
T ss_pred E-EEecCHHHHHHHHHHcCCCEEEEEh
Confidence 8 5544444667777777766655443
No 33
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.41 E-value=6.2e-06 Score=80.27 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=88.8
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+.-+++...+..+.+.+++.+
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~---g~~li~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVA---GKPLIDHALDRLAAA-------------GIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeEC---CEEHHHHHHHHHHHC-------------CCCEEEEEccCCHHHHHHHHhc
Confidence 58999999999975 7999999996 999999999999764 4666677777889999999986
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
.++|+. |.+. .++ ..+-|.++.+.... +.+ +.+++++.+.|++ .
T Consensus 66 -~~~~~~---i~~~-------------------~~~----~~~~g~~~~l~~~~-----~~~---~~~~~lv~~~D~i-~ 109 (221)
T cd06422 66 -SRFGLR---ITIS-------------------DEP----DELLETGGGIKKAL-----PLL---GDEPFLVVNGDIL-W 109 (221)
T ss_pred -ccCCce---EEEe-------------------cCC----CcccccHHHHHHHH-----Hhc---CCCCEEEEeCCee-e
Confidence 445542 2211 000 02446555433321 122 2268888989984 3
Q ss_pred cccchHHhHHHh--hcCccceeeeccCCcccccCcEE
Q 009878 198 FKAIPASLGVSA--TKQYHVNSLAVPRKAKEAIGGIT 232 (523)
Q Consensus 198 ~~~dp~~lG~~~--~~~~~~~~~vv~r~~~e~~G~i~ 232 (523)
..-.-.++-.|. ..+..+++.+++.......|.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 146 (221)
T cd06422 110 DGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFS 146 (221)
T ss_pred CCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEE
Confidence 332234555555 35566655554433333456544
No 34
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.39 E-value=1.6e-05 Score=86.99 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=111.1
Q ss_pred cceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 37 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
+.+++|+||||.||||+.+.||.++|+. |+|+|++.++.+.+. + .-.++|.++ +..+.+.++++
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------~~~iivvv~-~~~~~i~~~~~ 66 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTLA---GRSMLGHVLHAAAGL----A--------PQHLVVVVG-HDRERVAPAVA 66 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCcEEEEEC-CCHHHHHHHhh
Confidence 3578899999999999988999999996 999999999998764 1 225555555 45667777776
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+.. . .+.+. . ...|.|.|+...+. ++.+.+..-++++|.+.|+++
T Consensus 67 ~~~---~---~~~~~----------------~--------~~~~~Gt~~si~~a-----l~~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 67 ELA---P---EVDIA----------------V--------QDEQPGTGHAVQCA-----LEALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred ccC---C---ccEEE----------------e--------CCCCCCcHHHHHHH-----HHHhccCCCCeEEEEeCCeec
Confidence 421 0 11111 1 12345655533322 122322234678888899876
Q ss_pred ccccc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCc
Q 009878 197 LFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275 (523)
Q Consensus 197 ~~~~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~ 275 (523)
....+ -.++-.+...+.++.+.+.+.......|.+.. +.+|+.. ..+|..+.++.- .. .. -
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~--~~~g~V~-~~~EKp~~~~~~---------~~----~~--~ 173 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR--DQDGEVT-AIVEQKDATPSQ---------RA----IR--E 173 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE--CCCCCEE-EEEECCCCCHHH---------hh----cc--e
Confidence 54332 23455555566665544444333344665433 4466542 225654432210 00 01 2
Q ss_pred cceeeEEEehhhhHHHHhh
Q 009878 276 GNINQLILELGPYMEELKK 294 (523)
Q Consensus 276 gNinnl~~~l~~~~~~l~~ 294 (523)
.|++..+|+-+.+.+.+.+
T Consensus 174 ~~~Giy~f~~~~l~~~~~~ 192 (482)
T PRK14352 174 VNSGVYAFDAAVLRSALAR 192 (482)
T ss_pred EEEEEEEEEHHHHHHHHHh
Confidence 4888999998877666643
No 35
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=98.37 E-value=6.7e-06 Score=79.30 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=103.7
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+||||.|+||+. ..||.++|+. |+|++++.++.+... .+.-+++...+..+.+.+++..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~v~vv~~~~~~~i~~~~~~ 64 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVA---GRPFLEYLLEYLARQ-------------GISRIVLSVGYLAEQIEEYFGD 64 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEEC---CcchHHHHHHHHHHC-------------CCCEEEEEcccCHHHHHHHHcC
Confidence 48999999999974 6899999996 999999999998753 3554555556677888888875
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
...+|. ++.+ . . ...+.|.++...... +.+ +-+++++.+.|+++
T Consensus 65 ~~~~~~---~~~~--------~-----------~-----~~~~~G~~~~l~~a~-----~~~---~~~~~lv~~~D~~~- 108 (223)
T cd06915 65 GYRGGI---RIYY--------V-----------I-----EPEPLGTGGAIKNAL-----PKL---PEDQFLVLNGDTYF- 108 (223)
T ss_pred ccccCc---eEEE--------E-----------E-----CCCCCcchHHHHHHH-----hhc---CCCCEEEEECCccc-
Confidence 332332 1111 0 0 123466665443321 222 23578888899854
Q ss_pred cccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccc
Q 009878 198 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 277 (523)
Q Consensus 198 ~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gN 277 (523)
....-.++-.+.+.+.++++.+.+.......|.+ .+ +.+|+. +++.+-+.. . . +. -.|
T Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v-~~-d~~~~v----~~~~ek~~~---------~-~-----~~-~~~ 166 (223)
T cd06915 109 DVDLLALLAALRASGADATMALRRVPDASRYGNV-TV-DGDGRV----IAFVEKGPG---------A-A-----PG-LIN 166 (223)
T ss_pred CCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeE-EE-CCCCeE----EEEEeCCCC---------C-C-----CC-cEE
Confidence 2222344555666778877776654333445544 33 334543 333331110 0 0 11 248
Q ss_pred eeeEEEehhhhH
Q 009878 278 INQLILELGPYM 289 (523)
Q Consensus 278 innl~~~l~~~~ 289 (523)
++..+|+-+.+.
T Consensus 167 ~Giy~~~~~~l~ 178 (223)
T cd06915 167 GGVYLLRKEILA 178 (223)
T ss_pred EEEEEECHHHHh
Confidence 899999987554
No 36
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.35 E-value=6.1e-06 Score=82.41 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=97.9
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+||||.||||+ .+.||.++|+. |++++++.++.+.+. .+.-++....+..+.+.+|+++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~---~~p~i~~~~~~~~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 64 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIG---GRPILWHIMKIYSHY-------------GHNDFILCLGYKGHVIKEYFLN 64 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEEC---CEEHHHHHHHHHHhC-------------CCceEEEECCCCHHHHHHHHHh
Confidence 4889999999997 37899999996 999999888877654 4666666777888999999987
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCC--CCCcc----ccccCCCchhhHHHhhcChhHHHHHCCc-eEEEEE
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK--NKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGL-KWVLFF 190 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~--~~~~i----~~~P~GhGdi~~~L~~sGlld~l~~~G~-~yi~v~ 190 (523)
...+|. ++.+-.| ++++...+. .++.+ ...|.|+|+.+....+ .+ +. +++++.
T Consensus 65 ~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~---~~~~~~lv~ 124 (253)
T cd02524 65 YFLHNS---DVTIDLG---------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL---GDDETFMLT 124 (253)
T ss_pred hhhhcC---ceeEeec---------ccceeeecccccccceeecccCcccccHHHHHHHHH-----hc---CCCCeEEEE
Confidence 654443 2322111 111111000 01111 1235667765544322 12 22 688899
Q ss_pred eCCCccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCce
Q 009878 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRS 241 (523)
Q Consensus 191 ~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~ 241 (523)
+-|++ .....-.++-++..+++++++.++. +....|++. + +.+|+.
T Consensus 125 ~gD~i-~~~dl~~ll~~h~~~~~~~tl~~~~--~~~~~g~v~-~-d~~g~V 170 (253)
T cd02524 125 YGDGV-SDVNINALIEFHRSHGKLATVTAVH--PPGRFGELD-L-DDDGQV 170 (253)
T ss_pred cCCEE-ECCCHHHHHHHHHHcCCCEEEEEec--CCCcccEEE-E-CCCCCE
Confidence 89984 4333355677777888888766553 334456543 3 335644
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=98.34 E-value=1.4e-05 Score=78.43 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=88.0
Q ss_pred eEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHH
Q 009878 39 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 39 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~ 114 (523)
+.+|+||||.||||+ ...||.++|+. |++++++.++.+.+. .+ .++|.++. ..+.+.++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~---g~~li~~~l~~l~~~-------------~~~~i~vv~~~-~~~~~~~~ 63 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVA---GKPIIQYAIEDLREA-------------GIEDIGIVVGP-TGEEIKEA 63 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEEC---CcchHHHHHHHHHHC-------------CCCEEEEEcCC-CHHHHHHH
Confidence 357999999999997 47999999995 999999999998653 22 35566665 78888999
Q ss_pred HHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCC
Q 009878 115 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194 (523)
Q Consensus 115 l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN 194 (523)
+++...++++ +.+..| ..|.|.|+....... .+ . +-.++ +.+.|.
T Consensus 64 ~~~~~~~~~~---i~~~~~------------------------~~~~g~~~sl~~a~~-----~i-~-~~~~l-i~~~D~ 108 (236)
T cd04189 64 LGDGSRFGVR---ITYILQ------------------------EEPLGLAHAVLAARD-----FL-G-DEPFV-VYLGDN 108 (236)
T ss_pred hcchhhcCCe---EEEEEC------------------------CCCCChHHHHHHHHH-----hc-C-CCCEE-EEECCe
Confidence 8865555542 222111 124566665443321 12 1 23455 455676
Q ss_pred ccccccchHHhHHHhhcCccceeeeccCCcccccCcEE
Q 009878 195 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 232 (523)
Q Consensus 195 ~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~ 232 (523)
. .....-.++-.+..++.++++.+.+.......|.+.
T Consensus 109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (236)
T cd04189 109 L-IQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAV 145 (236)
T ss_pred e-cCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEE
Confidence 4 333333355566777888877766533223456543
No 38
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.33 E-value=5.1e-05 Score=81.69 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=48.7
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
-+|+||||.||||+.+.||.++|+. |++++++.++.+.+. + .-.++|.++. ..+.+.+++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~iiiv~~~-~~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVIDAARAL----G--------PQKIHVVYGH-GAEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECC-CHHHHHHHhcC
Confidence 4789999999999988999999996 999999999988653 1 1244566664 46778887764
No 39
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.30 E-value=1.6e-05 Score=79.62 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=108.9
Q ss_pred EEEecCC--CCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 41 FVLVAGG--LGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 41 vvlLaGG--lGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
+|+|||| .||||.. ..||.++|+. |++++++.++.+..+ + .+.-+++...+..+.+.+++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~---g~plI~~~l~~l~~~---~---------gi~~i~iv~~~~~~~i~~~l 65 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVA---GKPMIHHHIEACAKV---P---------DLKEVLLIGFYPESVFSDFI 65 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeEC---CeeHHHHHHHHHHhc---C---------CCcEEEEEecCCHHHHHHHH
Confidence 3788999 8999985 7899999996 999999999988753 1 35555556666888999999
Q ss_pred HhCC-CCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCC
Q 009878 116 ESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194 (523)
Q Consensus 116 ~~~~-~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN 194 (523)
.+.. .+|+. |.+. ....|.|.|+...... +.+....-++++|.+.|+
T Consensus 66 ~~~~~~~~~~---i~~~------------------------~~~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~gD~ 113 (257)
T cd06428 66 SDAQQEFNVP---IRYL------------------------QEYKPLGTAGGLYHFR-----DQILAGNPSAFFVLNADV 113 (257)
T ss_pred HhcccccCce---EEEe------------------------cCCccCCcHHHHHHHH-----HHhhccCCCCEEEEcCCe
Confidence 7542 23321 1110 1123567777655432 223222346788888887
Q ss_pred ccccccchHHhHHHhhcCccceeeeccC--CcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCC
Q 009878 195 GLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 272 (523)
Q Consensus 195 ~L~~~~dp~~lG~~~~~~~~~~~~vv~r--~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~ 272 (523)
+.....-.++.+|.++++++++.+.+. ......|.+. +...+|+. .++.|=|.. + .+
T Consensus 114 -~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~-~d~~~g~v----~~~~Ekp~~------~---------~~ 172 (257)
T cd06428 114 -CCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIV-EDPSTGEV----LHYVEKPET------F---------VS 172 (257)
T ss_pred -ecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEE-EeCCCCeE----EEEEeCCCC------c---------cc
Confidence 443333457888888888877666542 2234456543 31134543 233221110 0 11
Q ss_pred CCccceeeEEEehhhh
Q 009878 273 PFPGNINQLILELGPY 288 (523)
Q Consensus 273 ~f~gNinnl~~~l~~~ 288 (523)
. ..|+..++|+-+.+
T Consensus 173 ~-~~~~Giyi~~~~~~ 187 (257)
T cd06428 173 D-LINCGVYLFSPEIF 187 (257)
T ss_pred c-eEEEEEEEECHHHH
Confidence 1 25999999998854
No 40
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.30 E-value=4.2e-05 Score=74.47 Aligned_cols=182 Identities=19% Similarity=0.172 Sum_probs=104.5
Q ss_pred EEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhCCC
Q 009878 41 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 120 (523)
Q Consensus 41 vvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~ 120 (523)
+|+||||.||||+...||.++|+. |++++++.++.+... + .-.++|.++.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~---gkpli~~~i~~l~~~----~--------i~~i~iv~~~~-~~~i~~~~~~--- 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVLDAARAL----G--------PDRIVVVVGHG-AEQVKKALAN--- 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhCC---
Confidence 489999999999988899999996 999999999988654 1 12445555544 7788888764
Q ss_pred CCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcccccc
Q 009878 121 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKA 200 (523)
Q Consensus 121 fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~ 200 (523)
++ +.++.| . .+.|.++..... ++.+ +++.+++++.+.|+++....
T Consensus 62 ~~-----~~~~~~-----------------~-------~~~g~~~ai~~a-----~~~~-~~~~~~vli~~~D~p~~~~~ 106 (229)
T cd02540 62 PN-----VEFVLQ-----------------E-------EQLGTGHAVKQA-----LPAL-KDFEGDVLVLYGDVPLITPE 106 (229)
T ss_pred CC-----cEEEEC-----------------C-------CCCCCHHHHHHH-----HHhh-ccCCCeEEEEeCCccccCHH
Confidence 22 222211 0 124555544433 2222 22357899999998654322
Q ss_pred c-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCcccee
Q 009878 201 I-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNIN 279 (523)
Q Consensus 201 d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNin 279 (523)
+ -.++-.+.+.+++.++-+++.......|.+.. +.+|+.. ...|...+.+. + . .+ +..|++
T Consensus 107 ~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~-~~~ek~~~~~~---~-----~------~~-~~~~~g 168 (229)
T cd02540 107 TLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR--DGNGKVL-RIVEEKDATEE---E-----K------AI-REVNAG 168 (229)
T ss_pred HHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE--cCCCCEE-EEEECCCCChH---H-----H------hh-ceEEeE
Confidence 2 22344555556776666555332223454332 3346532 11333322111 0 0 00 135888
Q ss_pred eEEEehhhhHHHHhh
Q 009878 280 QLILELGPYMEELKK 294 (523)
Q Consensus 280 nl~~~l~~~~~~l~~ 294 (523)
..+|+-+.+.+.++.
T Consensus 169 iy~~~~~~~~~~l~~ 183 (229)
T cd02540 169 IYAFDAEFLFEALPK 183 (229)
T ss_pred EEEEEHHHHHHHHHH
Confidence 999998877666643
No 41
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.30 E-value=6.7e-06 Score=79.71 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=89.7
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+||||.|+||+ ...||.++|+. |++++++.++++... .+.-+++...+..+.+++++.+
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~---g~pli~~~l~~l~~~-------------~~~~iivv~~~~~~~i~~~~~~ 64 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVG---GKPILETIIDRFIAQ-------------GFRNFYISVNYLAEMIEDYFGD 64 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEECccCHHHHHHHHCC
Confidence 5899999999997 37899999996 999999999999764 3555555556667788888876
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
...+|+. +.+. . + ..|.|.|+.+..+.. ..-+.+++.+.|+ +.
T Consensus 65 ~~~~~~~---i~~~----------------~--~------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~-i~ 107 (220)
T cd06426 65 GSKFGVN---ISYV----------------R--E------DKPLGTAGALSLLPE---------KPTDPFLVMNGDI-LT 107 (220)
T ss_pred ccccCcc---EEEE----------------E--C------CCCCcchHHHHHHHh---------hCCCCEEEEcCCE-ee
Confidence 4333321 2111 0 1 123466666554422 1245777888886 44
Q ss_pred cccchHHhHHHhhcCccceeeeccCCcccccCcEEEE
Q 009878 198 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRL 234 (523)
Q Consensus 198 ~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~ 234 (523)
....-.++-.+..++.++++.+.+..+....| ++..
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~ 143 (220)
T cd06426 108 NLNYEHLLDFHKENNADATVCVREYEVQVPYG-VVET 143 (220)
T ss_pred ccCHHHHHHHHHhcCCCEEEEEEEcCCCCcce-EEEE
Confidence 43334566677777777777665544444444 3443
No 42
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.29 E-value=2.3e-05 Score=85.92 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=92.9
Q ss_pred cceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 37 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
.++.+|+||||.||||+...||.++|+. |++++++.++.+.+. .+.-+++...+..+.+.++|+
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~ivvv~~~~~~~i~~~~~ 69 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPVA---GRPMVAWAVKAARDL-------------GARKIVVVTGHGAEQVEAALQ 69 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEEC---CeeHHHHHHHHHHhC-------------CCCeEEEEeCCCHHHHHHHhc
Confidence 3688999999999999988899999996 999999999988654 234344444556777888775
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
. .+ +.+. . + ..|.|.|+.+... ++.+ ...-+.+++.+.|+++
T Consensus 70 ~---~~-----i~~v----------------~--~------~~~~Gt~~al~~~-----~~~l-~~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 70 G---SG-----VAFA----------------R--Q------EQQLGTGDAFLSG-----ASAL-TEGDADILVLYGDTPL 111 (481)
T ss_pred c---CC-----cEEe----------------c--C------CCcCCcHHHHHHH-----HHHh-hCCCCcEEEEeCCeec
Confidence 2 11 2221 1 1 1245666655433 2223 2222235678899876
Q ss_pred ccccch-HHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCce
Q 009878 197 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRS 241 (523)
Q Consensus 197 ~~~~dp-~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~ 241 (523)
....+. .++..+.+++.++++.+.+.....+.|.+.. +.+|+.
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~--d~~g~v 155 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVR--GADGAV 155 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEE--CCCCCE
Confidence 544333 4566777777777665544333344676543 345653
No 43
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.22 E-value=2.9e-05 Score=79.00 Aligned_cols=198 Identities=18% Similarity=0.112 Sum_probs=112.6
Q ss_pred EEEEecCCCCccCC----cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 40 AFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 40 avvlLaGGlGTRLG----~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
-+|+||||.||||. ...||.++|+. .++|+||+.++++..+. + .-.++|.|+...++.+.+++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~--g~~~li~~~l~~l~~~~--------~---~~~i~vvt~~~~~~~v~~~l 68 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLF--GDKSLLQQTLDRLKGLV--------P---PDRILVVTNEEYRFLVREQL 68 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcC--CCCcHHHHHHHHHhcCC--------C---CCcEEEEechHHHHHHHHHH
Confidence 47899999999996 46899999996 23999999999886541 0 12678888876667788888
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHH-CCceEEEEEeCCC
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTN 194 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~-~G~~yi~v~~vDN 194 (523)
++ .+ . .+ +++. +..+.|.++...+.. ..+.+ .+-+++.|.+.|.
T Consensus 69 ~~---~~-~--~~----------------~ii~--------ep~~~gTa~ai~~a~-----~~~~~~~~~~~vlVl~~D~ 113 (274)
T cd02509 69 PE---GL-P--EE----------------NIIL--------EPEGRNTAPAIALAA-----LYLAKRDPDAVLLVLPSDH 113 (274)
T ss_pred hh---cC-C--Cc----------------eEEE--------CCCCCCcHHHHHHHH-----HHHHhcCCCCeEEEecchh
Confidence 64 11 1 11 1222 112345555544331 12222 2346888888887
Q ss_pred ccccccch-HHhHHH---hhcCccceeeeccCCcccccCcEEEEecCCC-ceEEEEEeccCCCHHHHhcCCCCCCCccCC
Q 009878 195 GLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADG-RSMVINVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 195 ~L~~~~dp-~~lG~~---~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G-~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
.+....+. ..+--+ .+.+..+++-+.+..|....|.+..-...+| -..+ ..+.|=|..-.++. .. .+
T Consensus 114 ~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V--~~f~EKP~~~~a~~-----~~-~~ 185 (274)
T cd02509 114 LIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRV--KRFVEKPDLETAKE-----YL-ES 185 (274)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEE--eEEEECcChHHHHH-----Hh-hc
Confidence 54311111 122211 2256777777777667677786654211112 1122 23333232211110 00 01
Q ss_pred CCCCCccceeeEEEehhhhHHHHhhc
Q 009878 270 GYSPFPGNINQLILELGPYMEELKKT 295 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~~~~l~~~ 295 (523)
|-.+ -|+..+.|+.+.+.+.+++.
T Consensus 186 g~~~--wNsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 186 GNYL--WNSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred CCeE--EECceeeeeHHHHHHHHHHH
Confidence 1112 39999999999988888764
No 44
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.21 E-value=6.2e-05 Score=81.26 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=106.2
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhC
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 118 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~ 118 (523)
+++|+||||.||||+.+.||.++|+. |++++++.++.+.+.. ....+|.+. +..+.+.++++++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~g------------~~~iivvv~-~~~~~i~~~~~~~ 65 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLG---GKSLVERVLDSCEELK------------PDRRLVIVG-HQAEEVEQSLAHL 65 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEEC---ChhHHHHHHHHHHhCC------------CCeEEEEEC-CCHHHHHHHhccc
Confidence 67899999999999988999999996 9999999999987641 223445554 4456677777532
Q ss_pred CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcccc
Q 009878 119 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 198 (523)
Q Consensus 119 ~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~ 198 (523)
. .+.+..| ..+.|.++.+.+. ++.+. ..-++++|...|.++..
T Consensus 66 ~-------~i~~v~~------------------------~~~~G~~~sv~~~-----~~~l~-~~~~~vlV~~~D~P~i~ 108 (450)
T PRK14360 66 P-------GLEFVEQ------------------------QPQLGTGHAVQQL-----LPVLK-GFEGDLLVLNGDVPLLR 108 (450)
T ss_pred C-------CeEEEEe------------------------CCcCCcHHHHHHH-----HHHhh-ccCCcEEEEeCCccccC
Confidence 1 1222111 0234555544433 22232 22346778888887643
Q ss_pred ccc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccc
Q 009878 199 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 277 (523)
Q Consensus 199 ~~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gN 277 (523)
..+ -.++-.+.+.+.++...+.++......|.+. . +.+|+.. ..+|...+.+. +. -+. ..|
T Consensus 109 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-d~~g~v~-~~~ek~~~~~~---~~-----------~~~-~~~ 170 (450)
T PRK14360 109 PETLEALLNTHRSSNADVTLLTARLPNPKGYGRVF-C-DGNNLVE-QIVEDRDCTPA---QR-----------QNN-RIN 170 (450)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEE-E-CCCCCEE-EEEECCCCChh---Hh-----------cCc-EEE
Confidence 322 3345556666777665444433223356433 2 4456542 11454333211 00 011 248
Q ss_pred eeeEEEehhhhHHHHhh
Q 009878 278 INQLILELGPYMEELKK 294 (523)
Q Consensus 278 innl~~~l~~~~~~l~~ 294 (523)
+..++|+-+.+.+.+.+
T Consensus 171 ~Giy~f~~~~l~~~~~~ 187 (450)
T PRK14360 171 AGIYCFNWPALAEVLPK 187 (450)
T ss_pred EEEEEEEHHHHHHHHhh
Confidence 88899998877766643
No 45
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.21 E-value=3.4e-05 Score=83.31 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=107.6
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhCC
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 119 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~ 119 (523)
.+|+||||.||||+...||.++|+. |++++++.++.+... . -.++|.++ +..+.+.+++.+
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~---gkpli~~~l~~l~~~----~---------~~i~vv~~-~~~~~i~~~~~~-- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKIS---GKPMINWVIDTAKKV----A---------QKVGVVLG-HEAELVKKLLPE-- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEEC---CeeHHHHHHHHHHhc----C---------CcEEEEeC-CCHHHHHHhccc--
Confidence 4799999999999988999999996 999999999988753 1 12445454 444666666542
Q ss_pred CCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccccc
Q 009878 120 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 199 (523)
Q Consensus 120 ~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~ 199 (523)
.+.++.| ..|.|.++...... +.+. .-+++++.+.|+++...
T Consensus 63 -------~~~~~~~------------------------~~~~g~~~ai~~a~-----~~l~--~~~~vlv~~gD~p~i~~ 104 (448)
T PRK14357 63 -------WVKIFLQ------------------------EEQLGTAHAVMCAR-----DFIE--PGDDLLILYGDVPLISE 104 (448)
T ss_pred -------ccEEEec------------------------CCCCChHHHHHHHH-----HhcC--cCCeEEEEeCCcccCCH
Confidence 1122211 12345555444332 2221 13688999999876544
Q ss_pred cc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccce
Q 009878 200 AI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 278 (523)
Q Consensus 200 ~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNi 278 (523)
.| -.++-.+.++++++++.+++.......|.+. . + +|+... +|...-+.... . .+-.|+
T Consensus 105 ~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~-~-d-~g~v~~--~e~~~~~~~~~-------~--------~~~~~~ 164 (448)
T PRK14357 105 NTLKRLIEEHNRKGADVTILVADLEDPTGYGRII-R-D-GGKYRI--VEDKDAPEEEK-------K--------IKEINT 164 (448)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEE-E-c-CCeEEE--EECCCCChHHh-------c--------CcEEEe
Confidence 44 3466777777888877766643333456543 2 2 565533 66543221110 0 012599
Q ss_pred eeEEEehhhhHHHHh
Q 009878 279 NQLILELGPYMEELK 293 (523)
Q Consensus 279 nnl~~~l~~~~~~l~ 293 (523)
...+|+-+.+.+.+.
T Consensus 165 GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 165 GIYVFSGDFLLEVLP 179 (448)
T ss_pred EEEEEEHHHHHHHHH
Confidence 999999886666654
No 46
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.21 E-value=6.3e-05 Score=81.18 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=104.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||+...||.++|+. |++++++.++.+.+. .+ .++|.++ +.++.+.+++.
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~-------------gi~~ivvv~~-~~~~~i~~~~~ 67 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPVA---GRPMLAHVLAAAASL-------------GPSRVAVVVG-PGAEAVAAAAA 67 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEEC---CchHHHHHHHHHHhC-------------CCCcEEEEEC-CCHHHHHHHhh
Confidence 678899999999999988899999996 999999999998764 23 3444444 45677777775
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+. +. ++.++.| ..|.|.++...+. ++.+ ..+.+++++.+.|.++
T Consensus 68 ~~---~~---~~~~~~~------------------------~~~~G~~~sl~~a-----~~~l-~~~~~~~lv~~~D~P~ 111 (446)
T PRK14353 68 KI---AP---DAEIFVQ------------------------KERLGTAHAVLAA-----REAL-AGGYGDVLVLYGDTPL 111 (446)
T ss_pred cc---CC---CceEEEc------------------------CCCCCcHHHHHHH-----HHHH-hccCCCEEEEeCCccc
Confidence 32 11 1111111 1234555544432 2222 2234678888888865
Q ss_pred ccccch-HHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCc
Q 009878 197 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275 (523)
Q Consensus 197 ~~~~dp-~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~ 275 (523)
....+. .++- +.+++.+..+.+.+.....+.|.+.. .+|+.. ...|..+..+.. . .+. .
T Consensus 112 i~~~~l~~l~~-~~~~~~~~~i~~~~~~~~~~~g~~~~---~~g~v~-~~~ek~~~~~~~--------~------~~~-~ 171 (446)
T PRK14353 112 ITAETLARLRE-RLADGADVVVLGFRAADPTGYGRLIV---KGGRLV-AIVEEKDASDEE--------R------AIT-L 171 (446)
T ss_pred CCHHHHHHHHH-hHhcCCcEEEEEEEeCCCCcceEEEE---CCCeEE-EEEECCCCChHH--------h------hce-E
Confidence 433222 2233 23455666666555322235565432 355431 113432221110 0 011 2
Q ss_pred cceeeEEEehhhhHHHHhh
Q 009878 276 GNINQLILELGPYMEELKK 294 (523)
Q Consensus 276 gNinnl~~~l~~~~~~l~~ 294 (523)
.|+..++|+-+.+.+.+++
T Consensus 172 ~~~Giy~~~~~~l~~~l~~ 190 (446)
T PRK14353 172 CNSGVMAADGADALALLDR 190 (446)
T ss_pred EEEEEEEEEHHHHHHHHHh
Confidence 4888889988766565543
No 47
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.20 E-value=3.8e-05 Score=83.44 Aligned_cols=184 Identities=19% Similarity=0.179 Sum_probs=110.2
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++..|+||||.||||+...||.++|+. |++++++.++.+.+. .+ .+++.++ +..+.+.++|.
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~---g~pli~~~l~~l~~~-------------gi~~iiiv~~-~~~~~i~~~~~ 65 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLA---GRPMVSWPVAAAREA-------------GAGRIVLVVG-HQAEKVREHFA 65 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeC---CccHHHHHHHHHHhc-------------CCCeEEEEEC-CCHHHHHHHhc
Confidence 578899999999999988999999996 999999999988754 23 4455555 55677888875
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+.. .+.+..| ..|.|.|+..... ++.+ +..-+++++.+-|+++
T Consensus 66 ~~~-------~i~~~~~------------------------~~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~ 108 (459)
T PRK14355 66 GDG-------DVSFALQ------------------------EEQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPL 108 (459)
T ss_pred cCC-------ceEEEec------------------------CCCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccC
Confidence 321 1222111 1234776654443 2223 2224688999999976
Q ss_pred ccccc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCc
Q 009878 197 LFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275 (523)
Q Consensus 197 ~~~~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~ 275 (523)
....| -.++-.+..++.++.+...+.......|.+. + +.+|+.. ..+|-....+. +. .+. -
T Consensus 109 ~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~-~-d~~g~v~-~~~ek~~~~~~--------~~------~~~-~ 170 (459)
T PRK14355 109 LRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIV-R-DADGRVL-RIVEEKDATPE--------ER------SIR-E 170 (459)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEE-E-cCCCCEE-EEEEcCCCChh--------Hh------hcc-E
Confidence 54444 4566666667777666554442223456543 2 3455532 11332211111 00 011 2
Q ss_pred cceeeEEEehhhhHHHHh
Q 009878 276 GNINQLILELGPYMEELK 293 (523)
Q Consensus 276 gNinnl~~~l~~~~~~l~ 293 (523)
.|++.++|+-+.+.+.+.
T Consensus 171 ~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 171 VNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred EEEEEEEEeHHHHHHHHH
Confidence 489999999876665554
No 48
>PRK10122 GalU regulator GalF; Provisional
Probab=98.18 E-value=1.3e-05 Score=82.47 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=53.5
Q ss_pred cceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 37 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
.++.+|+||||.||||. ...||.++|+. ||++++++++.+... .|--+++...+..+.+.+
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~---gkpiI~~~l~~l~~~-------------Gi~~i~iv~~~~~~~i~~ 65 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA-------------GIKEIVLVTHASKNAVEN 65 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcCCChHHHHH
Confidence 46788999999999998 47899999996 999999999998764 355455556678899999
Q ss_pred HHH
Q 009878 114 LLE 116 (523)
Q Consensus 114 ~l~ 116 (523)
||.
T Consensus 66 ~~~ 68 (297)
T PRK10122 66 HFD 68 (297)
T ss_pred HHh
Confidence 996
No 49
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.17 E-value=3.2e-05 Score=81.13 Aligned_cols=198 Identities=16% Similarity=0.182 Sum_probs=111.3
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
+|+||||.||||+. +.||.++|+. |+ +++++.++.+... .+.-++....+..+.+.++|.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFG---GKYRIIDFPLSNCINS-------------GIRRIGVLTQYKSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceec---ceeeEeeehhhhhhhc-------------CCceEEEEeccChHHHHHHHH
Confidence 38999999999984 6899999996 88 7999999988764 455555555667778999998
Q ss_pred hCCCCCCCC---CcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 117 SNSYFGMKP---TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 117 ~~~~fGl~~---~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
+. +++.. ..+.++ | . .........|.|.|+...... +.+....-+++++.+-|
T Consensus 65 ~~--~~~~~~~~~~~~~~-~----~------------~~~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~gD 120 (361)
T TIGR02091 65 RG--WDFDGFIDGFVTLL-P----A------------QQRESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSGD 120 (361)
T ss_pred hc--cCccCccCCCEEEe-C----C------------cccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCC
Confidence 52 33221 111111 0 0 000011234578877655432 22322234677888888
Q ss_pred CccccccchHHhHHHhhcCccceeeeccC--CcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCC
Q 009878 194 NGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 271 (523)
Q Consensus 194 N~L~~~~dp~~lG~~~~~~~~~~~~vv~r--~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~ 271 (523)
+ +.......++-.+..++.+..+-+.+. ......|.+.. +.+|+. .++.|=|.. ++....+ .+.
T Consensus 121 ~-l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~v----~~~~ekp~~------~~~~~~~-~~~ 186 (361)
T TIGR02091 121 H-IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQV--DEDGRI----VDFEEKPAN------PPSIPGM-PDF 186 (361)
T ss_pred E-EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEE--CCCCCE----EEEEECCCC------ccccccc-ccc
Confidence 7 544333455666666666655544332 23344565543 234542 344332100 1011000 111
Q ss_pred CCCccceeeEEEehhhhHHHHhh
Q 009878 272 SPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 272 ~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
+..|+..+.|+-+.+.+.+.+
T Consensus 187 --~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 187 --ALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred --cEEeeeEEEEcHHHHHHHHHH
Confidence 135999999998876655544
No 50
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.15 E-value=6.2e-05 Score=78.84 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=90.9
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+ .++++++....+.+.++|.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~---g~pli~~~l~~l~~~-------------gi~~i~vv~~~~~~~~i~~~~~ 65 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVA---NKPILQYAIEDLAEA-------------GITDIGIVVGPVTGEEIKEIVG 65 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEEC---CEeHHHHHHHHHHHC-------------CCCEEEEEeCCCCHHHHHHHHh
Confidence 58999999999974 7899999996 999999999988654 33 4566777668899999998
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+...|+++ +.+..| ..|.|.++....... .+ . +-.++ +.+-|+++
T Consensus 66 ~~~~~~~~---~~~~~~------------------------~~~~G~~~al~~a~~-----~l-~-~~~~l-i~~gD~~~ 110 (353)
T TIGR01208 66 EGERFGAK---ITYIVQ------------------------GEPLGLAHAVYTARD-----FL-G-DDDFV-VYLGDNLI 110 (353)
T ss_pred cccccCce---EEEEEC------------------------CCCCCHHHHHHHHHH-----hc-C-CCCEE-EEECCeec
Confidence 75556542 222111 135677766555422 22 1 22344 55678754
Q ss_pred ccccchHHhHHHhhcCccceeeeccCCcccccCcE
Q 009878 197 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 231 (523)
Q Consensus 197 ~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i 231 (523)
....-.++-.+.+++++.++.+.+.......|.+
T Consensus 111 -~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~ 144 (353)
T TIGR01208 111 -QDGISRFVKSFEEKDYDALILLTKVRDPTAFGVA 144 (353)
T ss_pred -CccHHHHHHHHHhcCCCcEEEEEECCChhhCeEE
Confidence 3333456777788888887776653222345643
No 51
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00043 Score=70.27 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=125.7
Q ss_pred eEEEEecCCC--CccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 39 AAFVLVAGGL--GERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 39 vavvlLaGGl--GTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
+..|+|.||- |||.. ++.||.++|++ |.+..++.+..+.++. ++.-+++.-++..+....
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpia---G~pmI~Hhi~ac~qi~------------~l~eI~LvGFy~e~~f~~ 67 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIA---GVPMIHHHISACKQIS------------GLAEILLVGFYEERVFTD 67 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCccccC---CcchhhhhHHHHhccc------------chhheeEEecccchHHHH
Confidence 4556666774 99986 79999999997 9999999999887764 344557778888888888
Q ss_pred HHHhC-CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 114 LLESN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 114 ~l~~~-~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
|+.+- +.|. +| -+|--+.+|+|.||-...+++ +.++.--..+|+.|.
T Consensus 68 fis~~~~e~~-------------~p--------------vrYL~E~~plGtaGgLyhFrd-----qIl~g~ps~vFvlna 115 (407)
T KOG1460|consen 68 FISAIQQEFK-------------VP--------------VRYLREDNPLGTAGGLYHFRD-----QILAGSPSAVFVLNA 115 (407)
T ss_pred HHHHHHhhcc-------------cc--------------hhhhccCCCCCcccceeehhh-----HHhcCCCceEEEEec
Confidence 88763 2221 12 125567789999988777654 456667789999988
Q ss_pred CCccccccchHHhHHHhhcCccceeeeccCC--cccccCcEEEEec-CCCceEEEEEeccCCCHHHHhcCCCCCCCccCC
Q 009878 193 TNGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 193 DN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~--~~e~~G~i~~~~~-~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
|= -+....+.+|..|..++..+.+.++.-+ .+-.-|.++. + ..|+. +-|.|=|.-.-+ +
T Consensus 116 DV-CcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~--dP~t~ev----lHYveKPsTfvS------d----- 177 (407)
T KOG1460|consen 116 DV-CCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVE--DPSTGEV----LHYVEKPSTFVS------D----- 177 (407)
T ss_pred ce-ecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeee--cCCcCce----EEeecCcchhhh------c-----
Confidence 84 5666778899999999999999988844 4444676654 3 23433 567665433211 1
Q ss_pred CCCCCccceeeEEEehhhh
Q 009878 270 GYSPFPGNINQLILELGPY 288 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~ 288 (523)
--|.....|+-+.+
T Consensus 178 -----~InCGvYlF~~eif 191 (407)
T KOG1460|consen 178 -----IINCGVYLFTPEIF 191 (407)
T ss_pred -----ccceeEEEecHHHH
Confidence 23777778876543
No 52
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=5.7e-05 Score=75.98 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=100.6
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~ 116 (523)
.|+||||.||||. ...||.++||. +|+.+++-++++... .|. +.|.++..+....++++.
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~---~KPmi~y~l~~L~~a-------------GI~dI~II~~~~~~~~~~~llG 66 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVY---DKPMIYYPLETLMLA-------------GIRDILIVVGPEDKPTFKELLG 66 (286)
T ss_pred cEEecCcCccccccccccCCcccceec---CcchhHhHHHHHHHc-------------CCceEEEEecCCchhhhhhhhc
Confidence 4899999999997 58999999996 999999999999765 344 566677778888888998
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+-..||++ ++ +..+..|.|=++.+..- +++. |-+-..++--||++
T Consensus 67 dgs~~gv~---it------------------------Y~~Q~~p~GlA~Av~~a------~~fv--~~~~f~l~LGDNi~ 111 (286)
T COG1209 67 DGSDFGVD---IT------------------------YAVQPEPDGLAHAVLIA------EDFV--GDDDFVLYLGDNIF 111 (286)
T ss_pred CccccCcc---eE------------------------EEecCCCCcHHHHHHHH------Hhhc--CCCceEEEecCcee
Confidence 88889974 33 24455778888777632 3344 43445566689977
Q ss_pred ccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCc
Q 009878 197 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 240 (523)
Q Consensus 197 ~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~ 240 (523)
-. ....++-.+.+.+.+...-+.+=..-++.|+. .+ +.||+
T Consensus 112 ~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~-e~-d~~~~ 152 (286)
T COG1209 112 QD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVV-EF-DEDGK 152 (286)
T ss_pred cc-ChHHHHHHHhccCCCcEEEEEEcCCcccceEE-EE-cCCCc
Confidence 76 55666766666444444433332234566744 44 34564
No 53
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.02 E-value=0.00013 Score=71.49 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+||||.||||+. ..||.++|+. |++++++.++.+... .+.-+++...+..+.+.+++++
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~---g~~li~~~l~~l~~~-------------gi~~i~vv~~~~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEIN---GKPLLERQIETLKEA-------------GIDDIVIVTGYKKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeEC---CEEHHHHHHHHHHHC-------------CCceEEEEeccCHHHHHHHHhc
Confidence 48999999999984 5799999995 999999999988654 3444444555577888888864
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
. +| +.+ +. . + .+.+.|.++.+.+.. +.+ -+++++.+.|+ +.
T Consensus 65 ~--~~-----~~~----------------~~--~-~---~~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~-~~ 105 (229)
T cd02523 65 Y--PN-----IKF----------------VY--N-P---DYAETNNIYSLYLAR-----DFL----DEDFLLLEGDV-VF 105 (229)
T ss_pred c--CC-----eEE----------------Ee--C-c---chhhhCcHHHHHHHH-----HHc----CCCEEEEeCCE-ec
Confidence 3 22 221 11 1 0 122456655444332 222 25788888998 32
Q ss_pred cccchHHhHHHhhcCccceeeecc
Q 009878 198 FKAIPASLGVSATKQYHVNSLAVP 221 (523)
Q Consensus 198 ~~~dp~~lG~~~~~~~~~~~~vv~ 221 (523)
++.++-.+.+.+.+.++.+.+
T Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 106 ---DPSILERLLSSPADNAILVDK 126 (229)
T ss_pred ---CHHHHHHHHcCCCCCeEEEcc
Confidence 567777888888888776655
No 54
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.99 E-value=0.00028 Score=76.43 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=103.5
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+...||.++|+. |++++++.++++.+. .+.-++....+..+.+.+++.+
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i~---Gkpli~~~l~~l~~~-------------gi~~iivvv~~~~~~i~~~~~~ 65 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKVC---GKPMVEHVVDSVKKA-------------GIDKIVTVVGHGAEEVKEVLGD 65 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEeC---CccHHHHHHHHHHhC-------------CCCeEEEEeCCCHHHHHHHhcC
Confidence 356899999999999988999999996 999999999998653 2333333434555667666542
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
. +.+ +. +. .+.|.++.+.... +.+ +..-+++++.+.|+++.
T Consensus 66 ~---------~~~----------------~~--~~------~~~g~~~al~~a~-----~~l-~~~~d~vlv~~~D~p~i 106 (458)
T PRK14354 66 R---------SEF----------------AL--QE------EQLGTGHAVMQAE-----EFL-ADKEGTTLVICGDTPLI 106 (458)
T ss_pred C---------cEE----------------EE--cC------CCCCHHHHHHHHH-----HHh-cccCCeEEEEECCcccc
Confidence 1 111 11 10 1345555444332 222 22136788898998665
Q ss_pred cccc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCcc
Q 009878 198 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 276 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~g 276 (523)
...| -.++-.+.+.+++.++.+.+.......|.+.. +.+|+.. ..+|.....+. + ...+..
T Consensus 107 ~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~--d~~~~V~-~~~ek~~~~~~---------~------~~~~~~ 168 (458)
T PRK14354 107 TAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIR--NENGEVE-KIVEQKDATEE---------E------KQIKEI 168 (458)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEE--cCCCCEE-EEEECCCCChH---------H------hcCcEE
Confidence 4333 34555555556665544433222233554332 3355432 12444322111 0 001235
Q ss_pred ceeeEEEehhhhHHHHhh
Q 009878 277 NINQLILELGPYMEELKK 294 (523)
Q Consensus 277 Ninnl~~~l~~~~~~l~~ 294 (523)
|+...+|+-+.+.+.+.+
T Consensus 169 ~~Giy~f~~~~l~~~l~~ 186 (458)
T PRK14354 169 NTGTYCFDNKALFEALKK 186 (458)
T ss_pred EEEEEEEEHHHHHHHHHH
Confidence 888999998776666543
No 55
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=97.99 E-value=4.7e-05 Score=76.03 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=48.4
Q ss_pred EEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHH
Q 009878 40 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELL 115 (523)
Q Consensus 40 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l 115 (523)
-+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+. ++|+|. +..+.+.++|
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-------------gi~~v~iv~~-~~~~~i~~~~ 64 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYVVEEAVEA-------------GIEDILIVTG-RGKRAIEDHF 64 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEEC---CEEHHHHHHHHHHhC-------------CCCEEEEEeC-CcHHHHHHHh
Confidence 479999999999974 7899999996 999999999987653 343 445554 5678899998
Q ss_pred Hh
Q 009878 116 ES 117 (523)
Q Consensus 116 ~~ 117 (523)
.+
T Consensus 65 ~~ 66 (260)
T TIGR01099 65 DT 66 (260)
T ss_pred cc
Confidence 73
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.98 E-value=0.00031 Score=69.41 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=103.6
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++++|+||||.++||+ +|.++|+. |+|++++.++.+.+. .+.-+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i~---Gkpll~~~l~~l~~~-------------~i~~ivvv~~--~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADIG---GKPMIVRVYERASKA-------------GADRVVVATD--DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCcccccC---CcCHHHHHHHHHHhc-------------CCCeEEEECC--cHHHHHHHHH
Confidence 5788999999999995 79999996 999999999998764 2344444443 4778888764
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
+|. ++.+ . . ...+.|.+.+..++.. +...+-+++++.+.|+++.
T Consensus 61 ---~~~---~v~~----------~---------~-----~~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pli 104 (245)
T PRK05450 61 ---FGG---EVVM----------T---------S-----PDHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPLI 104 (245)
T ss_pred ---cCC---EEEE----------C---------C-----CcCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCCC
Confidence 232 1111 0 0 1124455555444321 2111346788899999876
Q ss_pred cccch-HHhHHHhhcCccceeeeccC-C----cccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCC
Q 009878 198 FKAIP-ASLGVSATKQYHVNSLAVPR-K----AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 271 (523)
Q Consensus 198 ~~~dp-~~lG~~~~~~~~~~~~vv~r-~----~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~ 271 (523)
...+. .++-.+..++.++..-++++ . .....+.++ + +.+|+. +++.+-+.. +..+...++..
T Consensus 105 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~-d~~g~v----~~~~e~~~~------~~~~~~~~~~~ 172 (245)
T PRK05450 105 PPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-L-DADGRA----LYFSRAPIP------YGRDAFADSAP 172 (245)
T ss_pred CHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-e-CCCCcE----EEecCCCCC------CCCCccccccC
Confidence 43332 35555555566776666655 1 122223343 2 345653 344433210 00011000000
Q ss_pred CCCccceeeEEEehhhhHHHHh
Q 009878 272 SPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 272 ~~f~gNinnl~~~l~~~~~~l~ 293 (523)
...-.|+....|+-+.+..+.+
T Consensus 173 ~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 173 TPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ccccEEEEEEecCHHHHHHHHh
Confidence 0113599999999876665443
No 57
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.97 E-value=0.00011 Score=75.46 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=129.8
Q ss_pred cceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 37 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
..++.++|.||.||||. +..||++.|++ .+++++++++.+... | --.+++.|+++-.+..+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~ns---------G---i~~I~la~~y~s~sl~~~ 72 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALINS---------G---ITKIVLATQYNSESLNRH 72 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHhC---------C---CcEEEEEEecCcHHHHHH
Confidence 47899999999999997 58999999997 999999998887653 2 345677777776667777
Q ss_pred HHHhC-CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 114 LLESN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 114 ~l~~~-~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
+.+.| ..||. .|. |. .++-|.|.-|-..+.++. |... .+- -.||.|.
T Consensus 73 ~~k~y~~~lgV---ei~-~s-----------------------~eteplgtaGpl~laR~~--L~~~--~~~-~ffVLns 120 (371)
T KOG1322|consen 73 LSKAYGKELGV---EIL-AS-----------------------TETEPLGTAGPLALARDF--LWVF--EDA-PFFVLNS 120 (371)
T ss_pred HHHHhhhccce---EEE-EE-----------------------eccCCCcccchHHHHHHH--hhhc--CCC-cEEEecC
Confidence 77766 23442 121 11 122277777777665542 2211 122 4567777
Q ss_pred CCccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCC
Q 009878 193 TNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 272 (523)
Q Consensus 193 DN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~ 272 (523)
| .++...--.|+-+|..+++|.+..|++-....+.|++..- ...|+ + ..+.|=|+++.+.
T Consensus 121 D-vi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d-~~~gr--V--~~F~EKPkd~vsn-------------- 180 (371)
T KOG1322|consen 121 D-VICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVID-EDTGR--V--IRFVEKPKDLVSN-------------- 180 (371)
T ss_pred C-eeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEe-cCCCc--e--eEehhCchhhhhc--------------
Confidence 7 4899888899999999999999999886556678876652 11454 3 6677766655322
Q ss_pred CCccceeeEEEehhhhHHHHh
Q 009878 273 PFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 273 ~f~gNinnl~~~l~~~~~~l~ 293 (523)
.-|.....|+-+.+.+++.
T Consensus 181 --kinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 181 --KINAGIYILNPEVLDRILL 199 (371)
T ss_pred --cccceEEEECHHHHhHhhh
Confidence 2367778888887776663
No 58
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.95 E-value=9.4e-05 Score=72.14 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=85.4
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
+|+||||.|+||+ ...||.++|+. |++++++.++.+.+. ++ .++|.+...-.+.++++++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv~---g~pli~~~l~~l~~~-------------g~~~iivv~~~~~~~~i~~~l~ 66 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPVA---NKPMIWYPLDWLEKA-------------GFEDVIVVVPEEEQAEISTYLR 66 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEEC---CeeHHHHHHHHHHHC-------------CCCeEEEEECHHHHHHHHHHHH
Confidence 5789999999998 47899999996 999999999998763 23 3555665545567888887
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+..+ .... ...... .....+.|.|+....+.+. + .+.+.+.+.|. +
T Consensus 67 ~~~~-~~~~-----------------~~~~~~------~~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~-i 112 (214)
T cd04198 67 SFPL-NLKQ-----------------KLDEVT------IVLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDL-I 112 (214)
T ss_pred hccc-ccCc-----------------ceeEEE------ecCCCCcChHHHHHHHHhh-----c----CCCEEEEeCcc-c
Confidence 5421 1000 000111 1123467889988877542 1 23456667775 4
Q ss_pred ccccchHHhHHHhhcCccceeeeccC
Q 009878 197 LFKAIPASLGVSATKQYHVNSLAVPR 222 (523)
Q Consensus 197 ~~~~dp~~lG~~~~~~~~~~~~vv~r 222 (523)
.....-.++-.+..+++.+++-+.+.
T Consensus 113 ~~~~l~~~l~~h~~~~~~~t~~~~~~ 138 (214)
T cd04198 113 TDLPLIELVDLHRSHDASLTVLLYPP 138 (214)
T ss_pred cccCHHHHHHHHhccCCcEEEEEecc
Confidence 44333456777777788887766553
No 59
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=97.87 E-value=0.00068 Score=66.76 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=79.7
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.|+||+ ||.++|+. |+|++++.++++.+.. .+.-+++.+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i~---gkpll~~~l~~l~~~~------------~i~~ivvv~~--~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADIA---GKPMIQHVYERAKKAK------------GLDEVVVATD--DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCcccC---CcCHHHHHHHHHHhCC------------CCCEEEEECC--cHHHHHHHHH
Confidence 4678999999999995 79999995 9999999999987531 2444455443 4778888864
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
+++ .+ + . .. ...+.|.|++..++.. + ....+++++.+.|+++.
T Consensus 61 ---~~~-----~~--------~--------~--~~----~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli 103 (239)
T cd02517 61 ---FGG-----KV--------V--------M--TS----PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLI 103 (239)
T ss_pred ---cCC-----EE--------E--------E--cC----cccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCC
Confidence 222 11 1 1 00 1124566766655421 2 11247888999999876
Q ss_pred cccc-hHHhHHHhhc-CccceeeeccC
Q 009878 198 FKAI-PASLGVSATK-QYHVNSLAVPR 222 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~-~~~~~~~vv~r 222 (523)
...+ -.++-.+... +++++..+++.
T Consensus 104 ~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (239)
T cd02517 104 PPEMIDQVVAALKDDPGVDMATLATPI 130 (239)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEEc
Confidence 4433 2344444344 56666555553
No 60
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.83 E-value=0.00078 Score=73.14 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=102.1
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+...||.++|+. |++++++.++.+.+. + .-.+++.++ +..+.+.+++..
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~---gkpli~~~i~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~~~ 68 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLA---GKPMVQHVIDAANEL----G--------AQHVHLVYG-HGGDLLKQTLAD 68 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeC---ChhHHHHHHHHHHhc----C--------CCcEEEEEC-CCHHHHHHhhcc
Confidence 578899999999999988899999996 999999999988543 1 124555555 455667776642
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
. .+.+ +. + ..+.|.++...... +.+ + .-+++++.+.|.++.
T Consensus 69 ~--------~~~~----------------i~--~------~~~~Gt~~al~~a~-----~~l-~-~~~~vlV~~gD~P~i 109 (456)
T PRK09451 69 E--------PLNW----------------VL--Q------AEQLGTGHAMQQAA-----PFF-A-DDEDILMLYGDVPLI 109 (456)
T ss_pred C--------CcEE----------------EE--C------CCCCCcHHHHHHHH-----Hhh-c-cCCcEEEEeCCcccC
Confidence 1 1221 11 1 12556666444332 122 1 236788999998764
Q ss_pred cccch-HHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCcc
Q 009878 198 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 276 (523)
Q Consensus 198 ~~~dp-~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~g 276 (523)
...+. .++..+.+.+ ..+.+++.......|.+ .. .+|+.. ..+|....++. .. ++. ..
T Consensus 110 ~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v-~~--~~g~V~-~~~EKp~~~~~---------~~-----~~~-~~ 168 (456)
T PRK09451 110 SVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRI-TR--ENGKVV-GIVEQKDATDE---------QR-----QIQ-EI 168 (456)
T ss_pred CHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEE-Ee--cCCeEE-EEEECCCCChH---------Hh-----hcc-EE
Confidence 33222 2333333333 23344433222346764 22 356431 12454322111 00 111 24
Q ss_pred ceeeEEEehhhhHHHHhh
Q 009878 277 NINQLILELGPYMEELKK 294 (523)
Q Consensus 277 Ninnl~~~l~~~~~~l~~ 294 (523)
|+..++|+-+.+.+.+++
T Consensus 169 ~~GiYi~~~~~l~~~l~~ 186 (456)
T PRK09451 169 NTGILVANGADLKRWLAK 186 (456)
T ss_pred EEEEEEEEHHHHHHHHHh
Confidence 888999998777666653
No 61
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=97.81 E-value=0.00026 Score=65.11 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=34.1
Q ss_pred EEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 41 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 41 vvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
+|+||||.|+|||. ||.++|+. |+|++++.++.+...
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i~---g~~li~~~l~~l~~~ 37 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPIG---GKPLIERVLEALREA 37 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEET---TEEHHHHHHHHHHHH
T ss_pred CEEECCcCcccCCC--CccceeEC---CccHHHHHHHHhhcc
Confidence 58999999999984 99999995 999999999999877
No 62
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.81 E-value=0.00034 Score=76.58 Aligned_cols=196 Identities=20% Similarity=0.146 Sum_probs=106.6
Q ss_pred EEEEecCCCCccCC----cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 40 AFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 40 avvlLaGGlGTRLG----~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
-.|+||||.||||+ .+.||.++|+. .++|+||+.++++..+. .-..+|.|+..-...+.+.+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l~--g~~~ll~~tl~~l~~~~------------~~~iviv~~~~~~~~~~~~l 67 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLALV--GDLTMLQQTLKRLAGLP------------CSSPLVICNEEHRFIVAEQL 67 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEcC--CCCcHHHHHHHHHhcCC------------CcCcEEecCHHHHHHHHHHH
Confidence 36899999999998 34799999995 34999999999887641 11344666554334556666
Q ss_pred HhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHH--CCceEEEEEeCC
Q 009878 116 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD--AGLKWVLFFQDT 193 (523)
Q Consensus 116 ~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~--~G~~yi~v~~vD 193 (523)
++. |++.. +++. +-.+.|.|....... ..+.+ .+-.+++|.+.|
T Consensus 68 ~~~---~~~~~------------------~~i~--------Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D 113 (468)
T TIGR01479 68 REI---GKLAS------------------NIIL--------EPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAAD 113 (468)
T ss_pred HHc---CCCcc------------------eEEe--------cccccCchHHHHHHH-----HHHHHHHCCCcEEEEecCc
Confidence 542 32211 1222 123345554432211 11222 234578899999
Q ss_pred Ccccccc-chHHhHHH---hhcCccceeeeccCCcccccCcEEEEecCC--CceEE-EEEeccCCCHHHHhcCCCCCCCc
Q 009878 194 NGLLFKA-IPASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMV-INVEYNQLDPLLRATGFPDGDVN 266 (523)
Q Consensus 194 N~L~~~~-dp~~lG~~---~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~--G~~~v-~nvEYsel~~~~~~~~~~~g~~~ 266 (523)
+.+.... .-.++-.+ .+++..+++-+.+..|....|.+..-...+ +...+ .-+|-.+.+...+ ..
T Consensus 114 ~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~--------~l 185 (468)
T TIGR01479 114 HVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQA--------YL 185 (468)
T ss_pred eeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHH--------HH
Confidence 8554211 11123322 334555666666666777788776410001 11122 2255433322110 00
Q ss_pred cCCC-CCCCccceeeEEEehhhhHHHHhhc
Q 009878 267 CETG-YSPFPGNINQLILELGPYMEELKKT 295 (523)
Q Consensus 267 ~~~g-~~~f~gNinnl~~~l~~~~~~l~~~ 295 (523)
.+| | + -|+..+.|+.+.+.+.+.+.
T Consensus 186 -~~g~~-~--wNsGif~~~~~~ll~~l~~~ 211 (468)
T TIGR01479 186 -ESGDY-Y--WNSGMFLFRASRYLAELKKH 211 (468)
T ss_pred -hcCCe-E--EEeeEEEEEHHHHHHHHHHH
Confidence 011 2 2 49999999999888888764
No 63
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=97.80 E-value=0.00016 Score=74.67 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=91.5
Q ss_pred eEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 39 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
+.+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+--++....+..+.+.++|
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~---g~pii~~~l~~l~~~-------------gi~~i~vv~~~~~~~i~~~~ 72 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA-------------GITEIVLVTHSSKNSIENHF 72 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999974 7999999996 999999999998764 35545556667789999999
Q ss_pred HhCCCCC--CCCC-cEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 116 ESNSYFG--MKPT-QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 116 ~~~~~fG--l~~~-~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
.....++ +++. +..+ .|+--... ..+..+ .+..+..|.|.|+.+..... +. +-+-+++.+-
T Consensus 73 ~~~~~~~~~l~~~~~~~~-~~e~~~i~--~~~~~i-----~~~~q~~~~Gtg~Av~~a~~------~~--~~~~~lVl~g 136 (302)
T PRK13389 73 DTSFELEAMLEKRVKRQL-LDEVQSIC--PPHVTI-----MQVRQGLAKGLGHAVLCAHP------VV--GDEPVAVILP 136 (302)
T ss_pred ccchhhhhhhhhhhhhHH-HHhhhhcc--ccCceE-----EEeecCCCCChHHHHHHHHH------Hc--CCCCEEEEeC
Confidence 7432222 1100 0000 00000000 001000 01223567888887665432 22 2233456678
Q ss_pred CCccc-------cccchHHhHHHhhcCccceeeeccCCcccccCcEEE
Q 009878 193 TNGLL-------FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITR 233 (523)
Q Consensus 193 DN~L~-------~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~ 233 (523)
||.+- ....-.++-+|.+.+++ ++.+.+.......|++..
T Consensus 137 D~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~~~yGvv~~ 183 (302)
T PRK13389 137 DVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADVTAYGVVDC 183 (302)
T ss_pred cceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccCCcceEEEe
Confidence 88541 12223567777777766 344433322334676643
No 64
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=97.78 E-value=0.0001 Score=73.93 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=50.0
Q ss_pred EEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 40 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 40 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
-+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+.-+++...+..+.+.++|.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~---gkpli~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~ 65 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPVIQYIVEEAVAA-------------GIEDIIIVTGRGKRAIEDHFD 65 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEeCCchHHHHHHhC
Confidence 479999999999974 7899999996 999999999988753 354445555567788999886
Q ss_pred h
Q 009878 117 S 117 (523)
Q Consensus 117 ~ 117 (523)
.
T Consensus 66 ~ 66 (267)
T cd02541 66 R 66 (267)
T ss_pred C
Confidence 4
No 65
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=5.5e-05 Score=74.66 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=58.9
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhC
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 118 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~ 118 (523)
+.+|+||.|.|+|||.+.||.++.++ |+++++.++++|... | .--.+|.|+++..+...+++.++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev~---gr~ii~~~i~~L~~~---------g---i~e~vvV~~g~~~~lve~~l~~~ 68 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEVG---GREIIYRTIENLAKA---------G---ITEFVVVTNGYRADLVEEFLKKY 68 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhcC---CeEeHHHHHHHHHHc---------C---CceEEEEeccchHHHHHHHHhcC
Confidence 46799999999999999999999997 999999999998765 1 34578999999999999999987
Q ss_pred CC
Q 009878 119 SY 120 (523)
Q Consensus 119 ~~ 120 (523)
++
T Consensus 69 ~~ 70 (239)
T COG1213 69 PF 70 (239)
T ss_pred Cc
Confidence 73
No 66
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.71 E-value=5.6e-05 Score=72.50 Aligned_cols=60 Identities=28% Similarity=0.465 Sum_probs=47.5
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHHh
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~~ 117 (523)
..|+||||.|||||. .||.++|+. |++++++.++.+... .+. +++.++. .++.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i~---GkplI~~vi~~l~~~-------------~i~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEVC---GRCLIDHVLSPLLKS-------------KVNNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEEC---CEEHHHHHHHHHHhC-------------CCCEEEEEeCC-CHHHHHHHHhh
Confidence 578999999999975 899999996 999999999999754 233 4555554 56778888864
No 67
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.67 E-value=0.0013 Score=63.69 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=79.6
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++++|+||||.|+||+ .|.++|+. |+|++++.++.+++.. .+..++.++ .++.+.+++++
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l~---Gkpll~~~l~~l~~~~------------~~~~IvV~~--~~~~i~~~~~~ 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPLG---GKPLIAWTIEAALESK------------LFDRVVVST--DDEEIAEVARK 60 (223)
T ss_pred CeEEEEecCCCCCCCC---CcccchhC---CccHHHHHHHHHHhCC------------CCCEEEEEC--CcHHHHHHHHH
Confidence 5789999999999995 59999995 9999999999987641 233344443 35667777664
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHC--CceEEEEEeCCCc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--GLKWVLFFQDTNG 195 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~--G~~yi~v~~vDN~ 195 (523)
+ |.. + .+ +. ++ ....-..|.++..... ++.+.+. +.+++++.+.|.+
T Consensus 61 ~---~~~---~-~~-------~~-----------~~-~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~P 109 (223)
T cd02513 61 Y---GAE---V-PF-------LR-----------PA-ELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTSP 109 (223)
T ss_pred h---CCC---c-ee-------eC-----------Ch-HHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCCC
Confidence 3 220 0 01 00 00 1111111333433332 3334332 3579999999998
Q ss_pred cccccch-HHhHHHhhcCccceeeeccC
Q 009878 196 LLFKAIP-ASLGVSATKQYHVNSLAVPR 222 (523)
Q Consensus 196 L~~~~dp-~~lG~~~~~~~~~~~~vv~r 222 (523)
+....+- .++..+..++.+..+-+++.
T Consensus 110 ~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 110 LRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 8754332 34455555667776666663
No 68
>PLN02917 CMP-KDO synthetase
Probab=97.65 E-value=0.0026 Score=65.58 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=103.2
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|++|+|.++||+ +|.++|+. |+|++++.++.+.... .+..++.. ..++.+.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i~---GkPLL~~vi~~a~~~~------------~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHIL---GKPMIQRTWERAKLAT------------TLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeEC---CEEHHHHHHHHHHcCC------------CCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999995 69999996 9999999999987531 23344443 346678887764
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
+ |.. +++ .....+.|.|.+..++ +.+ +...+++++.+-|.+|.
T Consensus 107 ~---~v~---------------------vi~------~~~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI 149 (293)
T PLN02917 107 F---GAD---------------------VIM------TSESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLI 149 (293)
T ss_pred c---CCE---------------------EEe------CCcccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCC
Confidence 2 211 111 0011355667765443 223 23457899999999987
Q ss_pred cccchH-HhHHHhhcC-ccceeeeccCCcccc--cCcEEEEecCCCceE-E--E-EEeccCCCHHHHhcCCCCCCCccCC
Q 009878 198 FKAIPA-SLGVSATKQ-YHVNSLAVPRKAKEA--IGGITRLTHADGRSM-V--I-NVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 198 ~~~dp~-~lG~~~~~~-~~~~~~vv~r~~~e~--~G~i~~~~~~~G~~~-v--~-nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
..-+.. ++-.+.+.. ..+...+.+-.+.+. .|.+..+++.+|+.. . . .+|+.+-.+ +.+.
T Consensus 150 ~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~--------~~~~---- 217 (293)
T PLN02917 150 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKV--------NPQF---- 217 (293)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCccc--------cccc----
Confidence 543221 233232222 223323333233333 455554456667521 0 0 123322110 0111
Q ss_pred CCCCCccceeeEEEehhhhHHHHh
Q 009878 270 GYSPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~~~~l~ 293 (523)
.+--|+....|+.++|. .+.
T Consensus 218 ---i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 218 ---PYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred ---ceEEEEEEEEeCHHHHH-HHH
Confidence 12349999999999887 554
No 69
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.60 E-value=0.0025 Score=62.68 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=46.2
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++++|+||+|.++||+ +|.++|+. |++++++.++++++.. .+.-+++.+. ++.+.+++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~---GkPli~~~i~~l~~~~------------~~~~ivv~t~--~~~i~~~~~~ 61 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDIL---GKPMIQHVYERAAQAA------------GVEEVYVATD--DQRIEDAVEA 61 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccC---CcCHHHHHHHHHHhcC------------CCCeEEEECC--hHHHHHHHHH
Confidence 4788999999999995 59999996 9999999999887641 2343444443 4788888875
No 70
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.57 E-value=0.00062 Score=66.60 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=34.2
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
+|+||||.||||+. +.||.++|+. |++++++.++.+...
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~---g~pli~~~l~~l~~~ 42 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVD---GKPMIEWVIESLAKI 42 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEEC---CEEHHHHHHHhhhcc
Confidence 58999999999964 7899999996 999999999988653
No 71
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0012 Score=69.85 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=126.9
Q ss_pred cceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 37 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
+++-.++||||.|+||+ ...+|+.+|.+ ...-+.|..+.... + +| ---+.+.|-...| ...+
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFg--GkYRiIDF~LSN~v------N---SG---i~~I~VltQy~~~-SL~~ 68 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFG--GKYRIIDFALSNCV------N---SG---IRRIGVLTQYKSH-SLND 68 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccC--ceeEEEeEEccccc------c---cC---CCeEEEEeccchh-HHHH
Confidence 46788999999999998 37899999996 23334444333322 1 12 3456777777777 7888
Q ss_pred HHHhCCCCCCCC--CcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEe
Q 009878 114 LLESNSYFGMKP--TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 191 (523)
Q Consensus 114 ~l~~~~~fGl~~--~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~ 191 (523)
++.....|++++ +.|+++.+..- ...-.|+ -|+.|.+.. + +..+.+.+-+|+.+.+
T Consensus 69 Hi~~G~~w~l~~~~~~v~ilp~~~~----------------~~~~~wy-~Gtadai~Q---n--l~~i~~~~~eyvlIls 126 (393)
T COG0448 69 HIGRGWPWDLDRKNGGVFILPAQQR----------------EGGERWY-EGTADAIYQ---N--LLIIRRSDPEYVLILS 126 (393)
T ss_pred HhhCCCccccccccCcEEEeCchhc----------------cCCCcce-eccHHHHHH---h--HHHHHhcCCCEEEEec
Confidence 888877776653 23333211000 0112244 244443322 1 3335567999999999
Q ss_pred CCCccccccchHHhHHHhhcCccceeeecc--CCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCC
Q 009878 192 DTNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 192 vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~--r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
-|= +.+.---.+|-+|.+.++++++-|.+ +..+.+-|++ .+ +++|+. +|+.|=|.. +...
T Consensus 127 gDh-IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim-~~-D~~~~i----~~F~eKp~~--------~~~~--- 188 (393)
T COG0448 127 GDH-IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVM-NV-DENGRI----IEFVEKPAD--------GPPS--- 188 (393)
T ss_pred CCE-EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCce-EE-CCCCCE----EeeeeccCc--------CCcc---
Confidence 886 66666667899999999999988876 4455556743 33 566754 666554332 1111
Q ss_pred CCCCCccceeeEEEehhhhHHHHhhc
Q 009878 270 GYSPFPGNINQLILELGPYMEELKKT 295 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~~~~l~~~ 295 (523)
.+ .+...+..|+-+.|.++|.+.
T Consensus 189 -~~--laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 189 -NS--LASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred -cc--eeeeeeEEEcHHHHHHHHHHH
Confidence 11 246889999999999999864
No 72
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.52 E-value=0.00015 Score=67.78 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=34.8
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
+++|+||||.|+|||. +|.++|+. |+|++++.++.+...
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~---g~~li~~~i~~l~~~ 39 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLD---GKPLLRHALDAALAA 39 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeC---CeeHHHHHHHHHHhC
Confidence 4689999999999985 99999995 999999999998654
No 73
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.51 E-value=0.00018 Score=71.15 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=50.2
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHHh
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~~ 117 (523)
+++|+||||.|+|||.+.||..+++. |+++|++.++.+++.. .+- +++.++....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~---Gkpvl~~tl~~f~~~~------------~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELG---GKPVLEYTLEAFLASP------------EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEET---TEEHHHHHHHHHHTTT------------TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEEC---CeEeHHHHHHHHhcCC------------CCCeEEEEecchhHHHHHHhhcC
Confidence 68999999999999999999999995 9999999999886541 233 5556666666788888776
No 74
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.50 E-value=0.0017 Score=63.49 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=47.2
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~l~ 116 (523)
+|+||||.|+||+. ..||.++|+. |++++++.++.+.+. ++. .+|++. ...+.+.+++.
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv~---g~pli~~~l~~l~~~-------------gi~~i~vv~~-~~~~~~~~~~~ 65 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPVA---NVPLIDYTLEWLEKA-------------GVEEVFVVCC-EHSQAIIEHLL 65 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceEC---CEEHHHHHHHHHHHC-------------CCCeEEEEeC-CcHHHHHHHHH
Confidence 57899999999974 7899999996 999999999888653 344 555555 44566677776
Q ss_pred hCC
Q 009878 117 SNS 119 (523)
Q Consensus 117 ~~~ 119 (523)
+..
T Consensus 66 ~~~ 68 (216)
T cd02507 66 KSK 68 (216)
T ss_pred hcc
Confidence 543
No 75
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.43 E-value=0.00022 Score=70.30 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=49.8
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHHh
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~~ 117 (523)
+++|+||||.|+|||.+.||.++++. |+|+|++.++.++... .+ .++|.++........+++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l~---gkpll~~~i~~~~~~~------------~~~~ivVv~~~~~~~~~~~~~~~ 67 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDLV---GEPIFIHALRPFLADN------------RCSKIIIVTQAQERKHVQDLMKQ 67 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEEC---CeEHHHHHHHHHHcCC------------CCCEEEEEeChhhHHHHHHHHHh
Confidence 68899999999999988899999996 9999999999876531 23 45566666555556666654
No 76
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.36 E-value=0.00028 Score=71.19 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=38.7
Q ss_pred cceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 37 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
.++++|+||||.|+|||.+.||.++++. |++++++.++.+...
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~---Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLL---GQPIALYSLYTFARM 65 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEEC---CeEHHHHHHHHHHhC
Confidence 3689999999999999988999999996 999999999888654
No 77
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=97.36 E-value=0.0031 Score=68.33 Aligned_cols=264 Identities=19% Similarity=0.204 Sum_probs=145.3
Q ss_pred CCc-CCCcccccccCC---CCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh----C-CCCC
Q 009878 52 LGY-NGIKVALPAETT---TGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES----N-SYFG 122 (523)
Q Consensus 52 LG~-~~pK~~lpv~~~---~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~----~-~~fG 122 (523)
|+| ..||++||.... ...+|=++++|-.+..... | .+-+=.-.|..-.+..++.+++ + ..||
T Consensus 161 LnYg~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~------g---~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~ 231 (513)
T PF14134_consen 161 LNYGNLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSN------G---KANLHFTVSPEHLDLFKKEVEEVKPKYEKKYG 231 (513)
T ss_pred CCCCCCCceeeecccCCCCCcCcHHHHHHHHHHHHhcC------C---eEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344 589999998533 3455666666654433211 1 3333344454433333444432 1 2355
Q ss_pred CCCCcEEEEEcCc---eeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccccc
Q 009878 123 MKPTQVKLLKQEK---VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 199 (523)
Q Consensus 123 l~~~~V~~f~Q~~---~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~ 199 (523)
.. =+|.|=.|.. --++ +.+..+.. .+.+++..-|.|||.....| .+..-..|||=||||+....
T Consensus 232 v~-f~IsfS~Qk~sTDTIAv-~~dN~pFR--~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvpd~ 298 (513)
T PF14134_consen 232 VK-FEISFSEQKPSTDTIAV-DPDNTPFR--NEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVPDR 298 (513)
T ss_pred ce-EEEEecccCCCCCeeEE-CCCCCccC--CCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCCcc
Confidence 43 2466666642 2233 46777777 55678999999999876654 44456789999999976432
Q ss_pred cch-------HHhHHHhh------------------------------cCc------------------------cceee
Q 009878 200 AIP-------ASLGVSAT------------------------------KQY------------------------HVNSL 218 (523)
Q Consensus 200 ~dp-------~~lG~~~~------------------------------~~~------------------------~~~~~ 218 (523)
.-. .+.|+.++ +.+ +==+-
T Consensus 299 ~k~~t~~yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiR 378 (513)
T PF14134_consen 299 LKEETVKYKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIR 378 (513)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCce
Confidence 211 01111110 000 00123
Q ss_pred ecc--CCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcC
Q 009878 219 AVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTG 296 (523)
Q Consensus 219 vv~--r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~ 296 (523)
||- |+.+|..||--.+.+.||...+-.||=+||+..-.+|.. -+...|.| |--.+++.+.-|+- ..
T Consensus 379 VCGMVkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~~---if~~~THF-----NPVDLVCgvkdykG----~k 446 (513)
T PF14134_consen 379 VCGMVKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQKE---IFKNSTHF-----NPVDLVCGVKDYKG----EK 446 (513)
T ss_pred eeeccccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHHH---HHHcCCCC-----CccceEeeccCCCC----Cc
Confidence 444 778899999666668899876666999999665433321 12223433 44567777765531 12
Q ss_pred CccccccCCcc--cCCCCCcccCcch-hhh------hhccccccCCCCCceeEEEecccceeecccCCCccc
Q 009878 297 GAIKEFVNPKY--KDASKTSFKSSTR-LEC------MMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA 359 (523)
Q Consensus 297 g~l~~~vnpK~--~d~~~~~~~~~~r-LE~------~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~ 359 (523)
-.|+.+|+|+. +.. |..--+.+| ||. +|-+ =...|++||= ..|.|||+..|+.
T Consensus 447 FdL~~fvD~~tgFIs~-KSk~Gk~LKAlELPGLWNGaMa~--------WnTvFVEVPl-~TFNPVKTVnDLL 508 (513)
T PF14134_consen 447 FDLPDFVDPNTGFISE-KSKNGKELKALELPGLWNGAMAD--------WNTVFVEVPL-ITFNPVKTVNDLL 508 (513)
T ss_pred CCchhccCCCCceeee-cCCCCccchhhccCCcccchhcC--------CceEEEEecc-ccCCCccchhhhc
Confidence 24666777652 111 000001222 443 1222 1236789996 9999999999874
No 78
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.22 E-value=0.00054 Score=64.60 Aligned_cols=37 Identities=32% Similarity=0.611 Sum_probs=33.3
Q ss_pred EEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 41 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 41 vvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
+|+||||.|+||| .||.++|+. |+|++++.++++++.
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~~---g~pll~~~i~~l~~~ 38 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPYK---GKTILEHVVDNALRL 38 (188)
T ss_pred eEEECCCCcccCC--CCceecccC---CeeHHHHHHHHHHHc
Confidence 6899999999998 589999995 999999999988754
No 79
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.22 E-value=0.00059 Score=64.59 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=49.4
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhC
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 118 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~ 118 (523)
+.+|++|||+|||||. .-|.++++ +||+++++.++.++.. . =-+++-+|.+| ..|++|+++-
T Consensus 1 m~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~~---~----------d~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 1 MMAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRKI---V----------DEIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred CceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHhh---c----------CcEEEEeCCCC-HhHHHHHHhc
Confidence 3579999999999998 77899999 5999999999988762 2 23567777665 6788888753
No 80
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.10 E-value=0.0032 Score=61.06 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=35.6
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
.+..|+||||+|.|| .+|.++++. |++++|+.++++...
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~~---g~~lie~v~~~L~~~ 42 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPLN---GRPLIEHVIDRLRPQ 42 (192)
T ss_pred CceEEEecCCccccc---cccccceeC---CeEHHHHHHHHhccc
Confidence 578899999999999 999999995 999999999999765
No 81
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.08 E-value=0.00068 Score=63.78 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=34.5
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.|+||||.|+|||. ||.++|+. |+|++++.++.+...
T Consensus 1 ~~~iILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~~ 39 (181)
T cd02503 1 ITGVILAGGKSRRMGG--DKALLELG---GKPLLEHVLERLKPL 39 (181)
T ss_pred CcEEEECCCccccCCC--CceeeEEC---CEEHHHHHHHHHHhh
Confidence 3679999999999985 99999995 999999999988753
No 82
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=97.03 E-value=0.00098 Score=64.50 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=36.6
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
+++|+||||.|+|||...||.++|+. |+|++++.++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i~---Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELG---GKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEEC---CeEHHHHHHHHHhcC
Confidence 46799999999999877899999995 999999999998754
No 83
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.02 E-value=0.00084 Score=64.84 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=35.9
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCC-cchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTG-TCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g-ksfL~l~~~~i~~l 82 (523)
++++|+||||+++||| .+|.++|+. | +|++++.++.+..+
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~ll~~~---g~~~ll~~~i~~l~~~ 48 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKALLPFG---SYSSLLEYQYTRLLKL 48 (196)
T ss_pred CceEEEECCcccccCC--CCceEEEeC---CCCcHHHHHHHHHHHh
Confidence 7899999999999997 589999995 8 99999999998643
No 84
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=96.94 E-value=0.0009 Score=64.98 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=35.4
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
++|+||||.|||||.+.||.++++. |+|++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l~---gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLELG---GRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEEC---CeEHHHHHHHHHhc
Confidence 3689999999999987899999995 99999999999865
No 85
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.91 E-value=0.0012 Score=64.71 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=38.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.|+|||...||.++|+. |++++++.++++.+.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~~---g~pli~~~l~~l~~~ 44 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPLG---GKPILEHTLEAFLAH 44 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEEC---CEEHHHHHHHHHHcC
Confidence 578899999999999988999999995 999999999998753
No 86
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=96.78 E-value=0.0018 Score=61.69 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.7
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
++|+||||.|+|||. +|.++++. |+|++++.++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPLG---ETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--CceeceeC---CccHHHHHHHHHHh
Confidence 579999999999985 79999995 99999999988754
No 87
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.77 E-value=0.0025 Score=60.21 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=33.8
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 80 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~ 80 (523)
+++|+||||.|||||- .||.++|+. |+|++++.++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i~---g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVELG---GKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEEC---CEEHHHHHHHHHH
Confidence 4689999999999983 399999995 9999999999885
No 88
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.72 E-value=0.0022 Score=63.82 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=53.3
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|++|+|.|||||.+.||-.+++. |+++|++.++.++.... -=.++|.++..-+....++.+
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq~l~l~---g~pll~~tl~~f~~~~~-----------i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQYLELG---GRPLLEHTLEAFLESPA-----------IDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred eEEEEEEcCccccccCCCCCceEEEEC---CEEehHHHHHHHHhCcC-----------CCeEEEEEChhhhHHHHHhhh
Confidence 678999999999999999999999996 99999999999877631 124667777767777777765
No 89
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=96.68 E-value=0.0021 Score=68.55 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=38.7
Q ss_pred cceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 37 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
.++++|+||||.|+|||...||.++|+. |+|++++.++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l~---GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRIG---GKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEEC---CeeHHHHHHHHHhcC
Confidence 4678999999999999988999999996 999999999988754
No 90
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.64 E-value=0.0016 Score=62.97 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=35.2
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
++.+|+||||.|+|||. +|.++|+. |+|++++.++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPWQ---GVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEEC---CEeHHHHHHHHHHh
Confidence 67899999999999985 79999995 99999999999864
No 91
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.61 E-value=0.0034 Score=66.65 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=36.9
Q ss_pred hcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 36 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 36 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
+.++++|+||||.||||| ..||.++|+. |+|++++.++.+..
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~ll~i~---Gkpll~~~i~~l~~ 44 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKALILLG---GKPLIERVVDRLRP 44 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCceeEEC---CeeHHHHHHHHHHh
Confidence 347899999999999996 3799999995 99999999998863
No 92
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.60 E-value=0.0018 Score=61.80 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 80 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~ 80 (523)
++.+|+||||.|+|||. .||.++|+. |+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~~-~~K~ll~~~---g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMGG-VDKGLQELN---GKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCCC-CCCceeEEC---CEEHHHHHHHHHh
Confidence 67899999999999963 699999995 9999999999886
No 93
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.40 E-value=0.0044 Score=65.81 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
+++.|+||||+|+||| .+|.++|+. |+|++++.++.+..
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~~---Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSYH---ESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEEC---CccHHHHHHHHHHh
Confidence 5689999999999998 499999995 99999999988864
No 94
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.19 E-value=0.0044 Score=65.38 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=35.4
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
.+..|+||||+|+||| .+|.++|+. |+|++++.++.+...
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~~---GkpLl~~~ie~l~~~ 199 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNYQ---GQPHAQYLYDLLAKY 199 (346)
T ss_pred CceEEEEeccccccCC--CCcccceeC---CccHHHHHHHHHHhh
Confidence 6788999999999998 699999995 999999999887653
No 95
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=95.97 E-value=0.011 Score=64.84 Aligned_cols=199 Identities=21% Similarity=0.158 Sum_probs=108.8
Q ss_pred ceEEEEecCCCCccCCc----CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY----NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~----~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
++-.|+||||.||||-. ..||.++|+. .++|+||..++++..+ +. .-++ |.|+..-.+.+++
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~--~~~sllq~t~~r~~~~----~~-------~~~i-ivt~~~~~~~v~~ 70 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLK--GDLTMLQTTICRLNGV----EC-------ESPV-VICNEQHRFIVAE 70 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECC--CCCCHHHHHHHHHHhC----CC-------CCcE-EEeCHHHHHHHHH
Confidence 35789999999999962 3699999995 4689999999987664 11 2234 5587766667776
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHC--C-ceEEEEE
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--G-LKWVLFF 190 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~--G-~~yi~v~ 190 (523)
.|.+.+. ...+++++|. .-.++|.- .+.+++ +.++ + -.-+.|.
T Consensus 71 ql~~~~~---------------------~~~~ii~EP~---~rnTApai---alaa~~-------~~~~~~~~~~~v~vl 116 (478)
T PRK15460 71 QLRQLNK---------------------LTENIILEPA---GRNTAPAI---ALAALA-------AKRHSPESDPLMLVL 116 (478)
T ss_pred HHHhcCC---------------------ccccEEecCC---CCChHHHH---HHHHHH-------HHHhcCCCCCeEEEe
Confidence 6654321 0123444332 22233321 222221 2222 2 2467778
Q ss_pred eCCCcccccc----chHHhHHH-hhcCccceeeeccCCcccccCcEEEEecCC-----CceEEEEEeccCCCHHHHhcCC
Q 009878 191 QDTNGLLFKA----IPASLGVS-ATKQYHVNSLAVPRKAKEAIGGITRLTHAD-----GRSMVINVEYNQLDPLLRATGF 260 (523)
Q Consensus 191 ~vDN~L~~~~----dp~~lG~~-~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~-----G~~~v~nvEYsel~~~~~~~~~ 260 (523)
..|. +.... +-.--+.. ++++.-+++=+.|..|..-.|=|-.-...+ +-..| ..+.|=|+...++
T Consensus 117 PaDH-~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V--~~F~EKPd~~tA~-- 191 (478)
T PRK15460 117 AADH-VIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEV--AQFVEKPNLETAQ-- 191 (478)
T ss_pred cccc-ccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEe--eEEEeCCCHHHHH--
Confidence 8887 33221 11111111 223555566666677888788665311001 11222 3333333332221
Q ss_pred CCCCCccCCCCCCCccceeeEEEehhhhHHHHhhc
Q 009878 261 PDGDVNCETGYSPFPGNINQLILELGPYMEELKKT 295 (523)
Q Consensus 261 ~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~ 295 (523)
.+.. +|--+| |...+.|+.+.+.+.+++.
T Consensus 192 ---~yl~-~G~y~W--NsGiF~~~a~~~l~~~~~~ 220 (478)
T PRK15460 192 ---AYVA-SGEYYW--NSGMFLFRAGRYLEELKKY 220 (478)
T ss_pred ---HHHH-cCCEEE--ecceeheeHHHHHHHHHHH
Confidence 1111 221135 9999999999998888774
No 96
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=95.96 E-value=0.095 Score=52.21 Aligned_cols=121 Identities=15% Similarity=0.109 Sum_probs=73.6
Q ss_pred EEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHHhCC
Q 009878 41 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLESNS 119 (523)
Q Consensus 41 vvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~~~~ 119 (523)
+|++|+|.|||| .+|.++++. |++++++.++++++. .+ .++|-|. ++.+.+.+++
T Consensus 2 ~iIpA~g~s~R~---~~K~L~~l~---GkPli~~~le~~~~~-------------~~d~VvVvt~---~~~i~~~~~~-- 57 (238)
T TIGR00466 2 VIIPARLASSRL---PGKPLEDIF---GKPMIVHVAENANES-------------GADRCIVATD---DESVAQTCQK-- 57 (238)
T ss_pred EEEecCCCCCCC---CCCeecccC---CcCHHHHHHHHHHhC-------------CCCeEEEEeC---HHHHHHHHHH--
Confidence 689999999999 489999996 999999999987543 12 2344443 3556666654
Q ss_pred CCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccccc
Q 009878 120 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 199 (523)
Q Consensus 120 ~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~ 199 (523)
||.. .++ . ....+.|..-+...+.. +....-+++.+.+.|.+|..
T Consensus 58 -~g~~---------------------~v~--~----~~~~~~Gt~r~~~~~~~------l~~~~~d~Vli~~gD~Pli~- 102 (238)
T TIGR00466 58 -FGIE---------------------VCM--T----SKHHNSGTERLAEVVEK------LALKDDERIVNLQGDEPFIP- 102 (238)
T ss_pred -cCCE---------------------EEE--e----CCCCCChhHHHHHHHHH------hCCCCCCEEEEEcCCcCcCC-
Confidence 3321 111 0 01124454445544321 11113468899999998764
Q ss_pred cchHHhHHH----hhcCccceeeeccC
Q 009878 200 AIPASLGVS----ATKQYHVNSLAVPR 222 (523)
Q Consensus 200 ~dp~~lG~~----~~~~~~~~~~vv~r 222 (523)
|..|--. ...+++++..+++.
T Consensus 103 --~~~I~~li~~~~~~~~~~a~~~~~~ 127 (238)
T TIGR00466 103 --KEIIRQVADNLATKNVPMAALAVKI 127 (238)
T ss_pred --HHHHHHHHHHHhcCCCCEEEEeeec
Confidence 4443333 33457778877775
No 97
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.93 E-value=0.014 Score=60.42 Aligned_cols=200 Identities=21% Similarity=0.219 Sum_probs=112.6
Q ss_pred eEEEEecCCCCccC----CcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHH
Q 009878 39 AAFVLVAGGLGERL----GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 39 vavvlLaGGlGTRL----G~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~ 114 (523)
+.-|+||||.|||| .-..||..|... +++|+||..++++..+.. .-.+++.|+..-...+++-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~--~~~Sllq~T~~R~~~l~~-----------~~~~~vVtne~~~f~v~eq 68 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLF--GDLSLLQQTVKRLAFLGD-----------IEEPLVVTNEKYRFIVKEQ 68 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeC--CCCcHHHHHHHHHhhcCC-----------ccCeEEEeCHHHHHHHHHH
Confidence 45689999999999 357999999885 589999999999987632 2356677777666666666
Q ss_pred HHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCC
Q 009878 115 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194 (523)
Q Consensus 115 l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN 194 (523)
|.+-+. ....+ ++++|..+ -+.|- |..+. +.-..+.|---+.|+..|-
T Consensus 69 l~e~~~-------------------~~~~~-illEP~gR---nTApA----IA~aa-----~~~~~~~~d~~~lVlpsDH 116 (333)
T COG0836 69 LPEIDI-------------------ENAAG-IILEPEGR---NTAPA----IALAA-----LSATAEGGDALVLVLPSDH 116 (333)
T ss_pred Hhhhhh-------------------ccccc-eEeccCCC---CcHHH----HHHHH-----HHHHHhCCCcEEEEecCcc
Confidence 654210 01122 55544333 22331 11111 2222333433566666666
Q ss_pred ccccccchHHhHH------HhhcCccceeeeccCCcccccCcEEEEec-CC-CceEEEEEeccCCCHHHHhcCCCCCCCc
Q 009878 195 GLLFKAIPASLGV------SATKQYHVNSLAVPRKAKEAIGGITRLTH-AD-GRSMVINVEYNQLDPLLRATGFPDGDVN 266 (523)
Q Consensus 195 ~L~~~~dp~~lG~------~~~~~~~~~~~vv~r~~~e~~G~i~~~~~-~~-G~~~v~nvEYsel~~~~~~~~~~~g~~~ 266 (523)
+... ...|.-- .++++.-+++=.+|..|.--.|=|-.-.. .+ |-+.| -++-|=|++..++ +..
T Consensus 117 -~I~d-~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V--~~FvEKPd~etA~-----~yv 187 (333)
T COG0836 117 -VIAD-EEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKV--DRFVEKPDLETAK-----KYV 187 (333)
T ss_pred -eecc-HHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEe--eeeeeCCCHHHHH-----HHH
Confidence 2221 1122211 12345666777777777777776643100 01 22233 3444444444332 122
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHhhc
Q 009878 267 CETGYSPFPGNINQLILELGPYMEELKKT 295 (523)
Q Consensus 267 ~~~g~~~f~gNinnl~~~l~~~~~~l~~~ 295 (523)
. +|--+| |...+.|+.+.+.+.+++.
T Consensus 188 ~-sG~y~W--NSGmF~Fra~~~l~e~~~~ 213 (333)
T COG0836 188 E-SGEYLW--NSGMFLFRASVFLEELKKH 213 (333)
T ss_pred H-cCceEe--eccceEEEHHHHHHHHHhh
Confidence 1 231145 9999999999988888764
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=95.92 E-value=0.012 Score=56.73 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=48.9
Q ss_pred EEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 40 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 40 avvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
-+|+||.|+|||+. .+.||+++-|. |+++++.++++|+.. +|--++...++.+|+-. ||+
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV~---g~plIErqI~~L~e~-------------gI~dI~IVvGYlkE~Fe-YLk 64 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKVN---GEPLIERQIEQLREA-------------GIDDITIVVGYLKEQFE-YLK 64 (231)
T ss_pred ceEEEecccccccccccccCChHHHHhc---CcccHHHHHHHHHHC-------------CCceEEEEeeehHHHHH-HHH
Confidence 36899999999996 68999999995 999999999998764 56666777788887754 554
No 99
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=95.30 E-value=0.04 Score=54.14 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=42.4
Q ss_pred EEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccc-hHHHHHHHHh
Q 009878 41 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDT-HSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T-~e~t~~~l~~ 117 (523)
+|+||||.++||| +|.++|+. |+|++++.++.+.... .+. ++|-|+..- ++.+.+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l~---Gkpli~~~i~~l~~~~------------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPLG---GKPLLEHLLDRLKRSK------------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCcccccC---CccHHHHHHHHHHhCC------------CCCeEEEECCCCcccHHHHHHHHH
Confidence 5889999999995 59999995 9999999999887531 133 445454433 2667777653
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=94.50 E-value=0.053 Score=55.08 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=85.5
Q ss_pred EEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 41 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 41 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+|+.|.|+|||+= -..||-|||+- +|+.+|++++...+. .|--+++-++.+...+.+||..
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIv---dKP~IqYiVeEa~~a-------------GIe~i~iVTgr~K~~IeDhFD~ 70 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVAA-------------GIEEILIVTGRGKRAIEDHFDT 70 (291)
T ss_pred EEEEccCcccccccccccCchhhcccc---CchhHHHHHHHHHHc-------------CCCEEEEEecCCcchHHHhCcC
Confidence 6889999999995 36899999995 899999999987654 4555555555555577777653
Q ss_pred CCCCCCCCCcEEEEEcCc------eeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCce-EEEEE
Q 009878 118 NSYFGMKPTQVKLLKQEK------VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFF 190 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~------~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~-yi~v~ 190 (523)
. |-|.. .+-++++ +..+ .+..++.. --+..|.|-|+.-.... .|. |-+ ++.+.
T Consensus 71 s--~ELE~---~L~~~~K~~~L~~v~~i-~~~~~i~~------vRQ~e~~GLGhAVl~A~------~~v--g~EpFaVlL 130 (291)
T COG1210 71 S--YELEN---TLEKRGKRELLEEVRSI-PPLVTISF------VRQKEPLGLGHAVLCAK------PFV--GDEPFAVLL 130 (291)
T ss_pred c--HHHHH---HHHHhCHHHHHHHHHhc-ccCceEEE------EecCCCCcchhHHHhhh------hhc--CCCceEEEe
Confidence 1 11100 0000011 1111 11222222 34557888888766542 244 555 44444
Q ss_pred eCCCccccccchH---HhHHHhh-cCccceeeeccCCcccccCcEE
Q 009878 191 QDTNGLLFKAIPA---SLGVSAT-KQYHVNSLAVPRKAKEAIGGIT 232 (523)
Q Consensus 191 ~vDN~L~~~~dp~---~lG~~~~-~~~~~~~~vv~r~~~e~~G~i~ 232 (523)
.+| |...--|. ++-...+ .+.-++.+-|++..-.+.|++.
T Consensus 131 ~Dd--l~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~ 174 (291)
T COG1210 131 PDD--LVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVID 174 (291)
T ss_pred CCe--eecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEe
Confidence 333 33222222 2222223 3445566666666667788775
No 101
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=93.09 E-value=1.4 Score=43.34 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=79.2
Q ss_pred EEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhCCC
Q 009878 41 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 120 (523)
Q Consensus 41 vvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~ 120 (523)
+|++|.|.++||+ .|.+.|+. |++++++.++++++.. .+-.++.+++ ++++.++.+++
T Consensus 2 aiIpArG~Skr~~---~Knl~~l~---GkpLi~~ti~~a~~s~------------~~d~IvVstd--~~~i~~~a~~~-- 59 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPFC---GKPMIAYSIEAALNSG------------LFDKVVVSTD--DEEIAEVAKSY-- 59 (222)
T ss_pred EEEccCCCCCCCC---CccchhcC---CcCHHHHHHHHHHhCC------------CCCEEEEeCC--CHHHHHHHHHc--
Confidence 5788999999994 68898885 9999999999887641 2334444444 35677777653
Q ss_pred CCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHH-CCceEEEEEeCCCccccc
Q 009878 121 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTNGLLFK 199 (523)
Q Consensus 121 fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~-~G~~yi~v~~vDN~L~~~ 199 (523)
|.. | |.+. +..+...--|..++.... ++.+.+ ...+++.+.+.|.+|...
T Consensus 60 -g~~---v--------~~~r------------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~~ 110 (222)
T TIGR03584 60 -GAS---V--------PFLR------------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQA 110 (222)
T ss_pred -CCE---e--------EEeC------------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCCH
Confidence 321 1 1110 001111112334444433 333422 346889999999998765
Q ss_pred cchH-HhHHHhhcCccceeeeccC
Q 009878 200 AIPA-SLGVSATKQYHVNSLAVPR 222 (523)
Q Consensus 200 ~dp~-~lG~~~~~~~~~~~~vv~r 222 (523)
-+-. ++....+.+++..+-|++.
T Consensus 111 ~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 111 KILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecc
Confidence 4332 3444445678888888873
No 102
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=91.06 E-value=0.27 Score=47.92 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=46.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l 115 (523)
+++.|+||-|.|+||| .+|.++|.. |+|++.+.++..+.- .. -+++.|+....+.....+
T Consensus 5 ~v~~VvLAAGrssRmG--~~KlLap~~---g~plv~~~~~~a~~a-------------~~~~vivV~g~~~~~~~~a~~ 65 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKLLAPLD---GKPLVRASAETALSA-------------GLDRVIVVTGHRVAEAVEALL 65 (199)
T ss_pred ceEEEEEcccccccCC--CcceecccC---CCcHHHHHHHHHHhc-------------CCCeEEEEeCcchhhHHHhhh
Confidence 7899999999999999 899999995 999999999987652 23 456666666444433333
No 103
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=78.59 E-value=1.6 Score=46.57 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=51.3
Q ss_pred ceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHH
Q 009878 38 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 38 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~ 114 (523)
+.-.|++|||-||||- ...||.+|||. +++.+.+-+..+.+.. -.-+++.+-..-.+++++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPIg---n~PMi~YpL~~L~~~g------------fteiiVv~~e~e~~~i~~a 73 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPIG---NKPMILYPLNSLEQAG------------FTEIIVVVNEDEKLDIESA 73 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhcccC---CcceeeeehhHHHhcC------------CeEEEEEecHHHHHHHHHH
Confidence 5567899999999994 47899999997 9999999988887651 2234555556677788888
Q ss_pred HHhC
Q 009878 115 LESN 118 (523)
Q Consensus 115 l~~~ 118 (523)
|.++
T Consensus 74 l~~~ 77 (433)
T KOG1462|consen 74 LGSN 77 (433)
T ss_pred HhcC
Confidence 8764
No 104
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=61.07 E-value=18 Score=36.00 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=46.6
Q ss_pred ceEEEEecCCCCccCCcC--CCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCc-cchHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYN--GIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD-DTHSRTQEL 114 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~--~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~-~T~e~t~~~ 114 (523)
++++|+=| |||++ .-|.++|+. +.+.+++++++++....+ =.++|-||. .+++...++
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL~---~~pmI~~~lervrks~~~-----------d~ivvATS~~~~d~~l~~~ 63 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPLG---GEPMIEYQLERVRKSKDL-----------DKIVVATSDKEEDDALEEV 63 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhcC---CCchHHHHHHHHhccccc-----------cceEEEecCCcchhHHHHH
Confidence 56677766 66654 447899996 999999999999876432 357888988 466677777
Q ss_pred HHhCC
Q 009878 115 LESNS 119 (523)
Q Consensus 115 l~~~~ 119 (523)
+.++.
T Consensus 64 ~~~~G 68 (241)
T COG1861 64 CRSHG 68 (241)
T ss_pred HHHcC
Confidence 77765
No 105
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=50.43 E-value=48 Score=31.65 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=26.8
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHH
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQ 83 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~ 83 (523)
++|+.|-|-.+|| .-|.+.++. |+|++++.++++++.+
T Consensus 1 iaiIpAR~gS~rl---p~Knl~~l~---gkpLi~~~i~~a~~s~ 38 (217)
T PF02348_consen 1 IAIIPARGGSKRL---PGKNLKPLG---GKPLIEYVIERAKQSK 38 (217)
T ss_dssp EEEEEE-SSSSSS---TTGGGSEET---TEEHHHHHHHHHHHTT
T ss_pred CEEEecCCCCCCC---CcchhhHhC---CccHHHHHHHHHHhCC
Confidence 3567774444444 346788885 9999999999997653
No 106
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=48.45 E-value=61 Score=32.57 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=58.3
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhc--cccCC------cCcc-cEEEEcCccch
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR--LAEGK------CQEI-PFAIMTSDDTH 108 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~--~~~g~------~~~i-Pl~IMtS~~T~ 108 (523)
+..+|+.|==..||| .-|.+-.+ .|++.+++.+++..+- .... .++.. .+.. =-++|||.+-.
T Consensus 3 ~~~viIPAR~~STRL---pgKPLadI---~GkpmI~rV~e~a~~s--~~~rvvVATDde~I~~av~~~G~~avmT~~~h~ 74 (247)
T COG1212 3 KFVVIIPARLASTRL---PGKPLADI---GGKPMIVRVAERALKS--GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQ 74 (247)
T ss_pred ceEEEEecchhcccC---CCCchhhh---CCchHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCC
Confidence 467888887777777 44566666 4999999999987643 1110 00000 0011 36799998543
Q ss_pred ---HHHHHHHHhCCCCCCCCCcEEEEEcCceeee
Q 009878 109 ---SRTQELLESNSYFGMKPTQVKLLKQEKVACL 139 (523)
Q Consensus 109 ---e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l 139 (523)
+.+.+.+++.. ++.+.+.+=.|+-.|++
T Consensus 75 SGTdR~~Ev~~~l~---~~~~~iIVNvQGDeP~i 105 (247)
T COG1212 75 SGTDRLAEVVEKLG---LPDDEIIVNVQGDEPFI 105 (247)
T ss_pred CccHHHHHHHHhcC---CCcceEEEEccCCCCCC
Confidence 55666666544 45677888889999987
No 107
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=38.76 E-value=49 Score=29.87 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=14.7
Q ss_pred cccEEEEcCccchHHHHHHHH
Q 009878 96 EIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 96 ~iPl~IMtS~~T~e~t~~~l~ 116 (523)
++|+++++...--+...++++
T Consensus 84 ~~Piil~~~~g~w~~l~~~l~ 104 (133)
T PF03641_consen 84 KVPIILLNIDGFWDPLLEFLD 104 (133)
T ss_dssp S-EEEEEECGGCCHHHHHHHH
T ss_pred CCCEEEeCCcchHHHHHHHHH
Confidence 679999997655566667764
No 108
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.25 E-value=3.3e+02 Score=26.57 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=60.8
Q ss_pred CcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCcc-chHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCce
Q 009878 68 GTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD-THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARL 146 (523)
Q Consensus 68 gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~-T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~ 146 (523)
+-+..+-.++.|.+|..-+... +||++--.-.. -.+.-+..|.+--.=|++... -+|..+-.+.-....+
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~~------giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p---~~~~vv~~l~P~~~D~ 119 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQA------GIPVVYTAQPGEQSPEDRALLKDFWGPGLTASP---EQQKVVDELAPGADDT 119 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHHc------CCcEEEEecCCcCCHHHHHHHHHhcCCCCCCCh---hhhhhHHhcCCCCCce
Confidence 4447788889999997776543 79987766554 455566777654333444221 1122121111111112
Q ss_pred eecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 147 AMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 147 ~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
++ ..| -|.++++|.+++.|.+.|+..+.+..|
T Consensus 120 vL-------~kw-------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 120 VL-------TKW-------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred EE-------eee-------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 22 111 289999999999999999998876533
No 109
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=26.40 E-value=2.1e+02 Score=25.58 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=43.1
Q ss_pred CccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC-eeEccceeeeeCCCCC-CCCccceeeecc
Q 009878 433 CSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG-KVQNKGWTLEPVDHKD-TSVPEEIRIRGF 501 (523)
Q Consensus 433 ~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~-~v~N~g~~~~~~~~~~-~~~~~~~~~rg~ 501 (523)
..|....++.++.+....+.+.+.|+|++.-..+-.+.... .|++.| .+..=++.. -...-.++++|-
T Consensus 15 V~I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~~~~~L~a~~I~V~~Gg-~l~iGs~~~P~~~~~~I~L~G~ 84 (125)
T PF10162_consen 15 VVIPAGQTVLLDVSTPKLGSLIIGGTLIFDDDRDITLRAEYILVEGGG-RLIIGSEDCPFQGKATITLYGR 84 (125)
T ss_pred EEECCCCEEEEcCCChheeEEEEEEEEEEccCCCCEEEEEEEEECCCC-eEEecCCCCCcCceEEEEEEcC
Confidence 44677778888887777788888888888877666666666 666665 444322221 122345556663
No 110
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=23.96 E-value=40 Score=24.49 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=11.1
Q ss_pred EEEEecCCCceecC
Q 009878 509 LERSYSEPGKFSLK 522 (523)
Q Consensus 509 ~~~~~~~~g~~~~~ 522 (523)
..+.|++||.|.+.
T Consensus 5 ~nW~FT~PG~Y~l~ 18 (41)
T TIGR03769 5 ANWVFTKPGTYTLT 18 (41)
T ss_pred cceeeCCCeEEEEE
Confidence 34689999999873
No 111
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=20.35 E-value=4.4e+02 Score=27.95 Aligned_cols=127 Identities=14% Similarity=0.191 Sum_probs=68.4
Q ss_pred CcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCC--CCcEEEEEcCceeeeecCCCc
Q 009878 68 GTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMK--PTQVKLLKQEKVACLDDNDAR 145 (523)
Q Consensus 68 gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~--~~~V~~f~Q~~~P~l~~~~g~ 145 (523)
.-.|+.+.+.+..+| .+.-+|-||.......-++......|... ..+..+|.... ..+|.
T Consensus 46 ~SnF~kyF~~nF~~l-------------gLKkLi~t~y~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~-----~~dg~ 107 (336)
T PF13651_consen 46 ESNFFKYFAQNFNEL-------------GLKKLIATSYAESPIAGKFESEDPQFDSSKTPKKGYIFEYDG-----NGDGK 107 (336)
T ss_pred hhHHHHHHHHHHHHh-------------cchhheeecccCCccccccccccccccccccccceEEEEEec-----CCccc
Confidence 445888888888777 46666888887766444433322222111 11223332111 12333
Q ss_pred eeecCCCCCccccc-cCCCchhh-----HHHhhc-------------ChhHHHHHCCceEEEEEeCCCccccccchHH--
Q 009878 146 LAMDPKNKYRIQTK-PHGHGDVH-----ALLYSS-------------GLLKEWHDAGLKWVLFFQDTNGLLFKAIPAS-- 204 (523)
Q Consensus 146 ~~l~~~~~~~i~~~-P~GhGdi~-----~~L~~s-------------Glld~l~~~G~~yi~v~~vDN~L~~~~dp~~-- 204 (523)
+-. ..+.|. ..|+||.- .+|.++ -.+++|.+.+++++.+.+...+--+-+.|.+
T Consensus 108 ~~~-----~~~~~~~l~GdGDFrS~E~i~Ll~eADIVVTNPPFSLFrEyv~~Li~~~KkFlIIGN~NaiTYkeiFplik~ 182 (336)
T PF13651_consen 108 IDI-----DDIEVTPLKGDGDFRSDECIELLKEADIVVTNPPFSLFREYVAQLIEYDKKFLIIGNINAITYKEIFPLIKE 182 (336)
T ss_pred ccc-----cccceeeccCCCCcCcHHHHHHHhcCCEEEeCCCcHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhc
Confidence 222 234444 45888862 223221 2678888999999988877443323355654
Q ss_pred ----hHHHhhcCccceeee
Q 009878 205 ----LGVSATKQYHVNSLA 219 (523)
Q Consensus 205 ----lG~~~~~~~~~~~~v 219 (523)
+|++. +.++.+.|
T Consensus 183 nk~WlG~~~--~g~~~F~v 199 (336)
T PF13651_consen 183 NKIWLGYTF--RGDMWFRV 199 (336)
T ss_pred CcEEecccc--CCceeeec
Confidence 77766 44555553
Done!