Query 009878
Match_columns 523
No_of_seqs 250 out of 734
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 1E-122 5E-127 1005.6 39.1 500 5-521 79-618 (630)
2 3gue_A UTP-glucose-1-phosphate 100.0 1.4E-94 4.7E-99 770.2 31.4 401 31-481 69-482 (484)
3 3r3i_A UTP--glucose-1-phosphat 100.0 3.1E-90 1.1E-94 741.3 29.3 387 33-481 122-520 (528)
4 2oeg_A UTP-glucose-1-phosphate 100.0 1.4E-87 4.8E-92 724.8 19.9 402 30-485 67-491 (505)
5 3oc9_A UDP-N-acetylglucosamine 100.0 2.6E-82 8.9E-87 665.7 27.4 371 22-429 17-397 (405)
6 2yqc_A UDP-N-acetylglucosamine 100.0 3.2E-80 1.1E-84 667.7 29.8 388 9-428 69-478 (486)
7 2icy_A Probable UTP-glucose-1- 100.0 1.3E-80 4.5E-85 667.3 25.0 412 7-481 48-464 (469)
8 2i5k_A UTP--glucose-1-phosphat 100.0 6.4E-77 2.2E-81 641.9 28.4 411 8-481 66-480 (488)
9 1jv1_A Glcnac1P uridyltransfer 100.0 3.4E-75 1.2E-79 630.8 33.0 388 10-425 70-480 (505)
10 3st8_A Bifunctional protein GL 99.1 9.3E-10 3.2E-14 118.8 16.5 192 37-294 11-204 (501)
11 3oam_A 3-deoxy-manno-octuloson 98.5 9.7E-07 3.3E-11 86.7 14.6 185 38-293 2-197 (252)
12 4ecm_A Glucose-1-phosphate thy 98.5 1.8E-06 6.1E-11 85.4 14.9 179 38-292 24-206 (269)
13 1yp2_A Glucose-1-phosphate ade 98.4 2.2E-06 7.5E-11 90.8 14.4 214 38-294 20-246 (451)
14 3brk_X Glucose-1-phosphate ade 98.4 3.4E-06 1.2E-10 88.6 15.0 203 36-293 10-221 (420)
15 1fxo_A Glucose-1-phosphate thy 98.3 6.2E-06 2.1E-10 83.0 13.7 151 38-241 2-156 (293)
16 2qh5_A PMI, ALGA, mannose-6-ph 98.3 4.5E-06 1.6E-10 84.3 12.6 193 38-294 4-204 (308)
17 4fce_A Bifunctional protein GL 98.3 4.1E-05 1.4E-09 80.6 19.9 180 38-294 8-189 (459)
18 3pnn_A Conserved domain protei 98.2 1.4E-05 4.9E-10 80.6 14.4 172 38-249 5-186 (303)
19 1lvw_A Glucose-1-phosphate thy 98.2 1.6E-05 5.6E-10 80.0 14.5 150 39-241 4-157 (295)
20 3k8d_A 3-deoxy-manno-octuloson 98.2 1.2E-05 4.2E-10 79.8 12.7 190 38-293 18-213 (264)
21 1mc3_A Glucose-1-phosphate thy 98.1 8.4E-06 2.9E-10 82.2 11.0 177 39-288 4-184 (296)
22 3tqd_A 3-deoxy-manno-octuloson 98.1 1.6E-05 5.5E-10 78.6 12.6 187 38-293 9-206 (256)
23 3juk_A UDP-glucose pyrophospho 98.1 2E-05 6.8E-10 78.0 12.6 64 39-118 3-69 (281)
24 2v0h_A Bifunctional protein GL 98.1 4.2E-05 1.4E-09 80.6 14.5 180 38-294 5-186 (456)
25 1ezi_A CMP-N-acetylneuraminic 98.0 4.4E-05 1.5E-09 73.0 12.4 130 38-222 4-136 (228)
26 1hm9_A GLMU, UDP-N-acetylgluco 98.0 7.5E-05 2.6E-09 79.0 15.3 181 40-294 13-195 (468)
27 2y6p_A 3-deoxy-manno-octuloson 98.0 5.8E-05 2E-09 72.2 12.8 113 38-212 2-115 (234)
28 1h7e_A 3-deoxy-manno-octuloson 98.0 3.3E-05 1.1E-09 74.5 10.6 125 38-222 2-129 (245)
29 3f1c_A Putative 2-C-methyl-D-e 97.8 0.00012 4.1E-09 71.3 12.4 66 38-118 3-70 (246)
30 2x65_A Mannose-1-phosphate gua 97.8 0.00014 4.8E-09 74.6 13.3 194 39-294 2-206 (336)
31 1qwj_A Cytidine monophospho-N- 97.8 0.00017 5.8E-09 69.3 12.3 128 38-220 3-132 (229)
32 2vsh_A TARI, 2-C-methyl-D-eryt 97.8 8.3E-05 2.8E-09 70.9 10.0 65 39-117 3-68 (236)
33 1vic_A 3-deoxy-manno-octuloson 97.7 0.0001 3.4E-09 72.3 10.1 128 38-222 2-130 (262)
34 1tzf_A Glucose-1-phosphate cyt 97.7 3E-05 1E-09 75.3 6.3 189 39-288 3-199 (259)
35 2wee_A MOBA-related protein; u 97.7 3E-05 1E-09 72.0 5.5 60 38-116 5-65 (197)
36 2waw_A MOBA relate protein; un 97.7 3E-05 1E-09 71.9 4.9 60 38-116 5-65 (199)
37 2xwl_A 2-C-methyl-D-erythritol 97.6 6.1E-05 2.1E-09 71.3 6.7 42 38-82 2-43 (223)
38 1vgw_A 4-diphosphocytidyl-2C-m 97.6 3.6E-05 1.2E-09 73.4 4.2 42 38-82 6-47 (231)
39 2yc3_A 2-C-methyl-D-erythritol 97.6 4.9E-05 1.7E-09 72.4 4.7 42 38-82 4-45 (228)
40 4fcu_A 3-deoxy-manno-octuloson 97.5 0.00035 1.2E-08 68.9 10.5 181 39-292 2-197 (253)
41 3rsb_A Adenosylcobinamide-phos 97.5 5.9E-05 2E-09 70.3 4.6 61 40-117 2-62 (196)
42 3q80_A 2-C-methyl-D-erythritol 97.5 0.00012 4.2E-09 71.1 7.0 64 38-116 7-71 (231)
43 2cu2_A Putative mannose-1-phos 97.4 0.00023 7.9E-09 73.0 8.3 189 39-294 3-203 (337)
44 1i52_A 4-diphosphocytidyl-2-C- 97.4 4E-05 1.4E-09 73.7 2.1 42 38-82 7-48 (236)
45 4evw_A Nucleoside-diphosphate- 97.4 2.6E-05 9.1E-10 76.7 0.8 38 41-81 2-42 (255)
46 2e3d_A UTP--glucose-1-phosphat 97.4 0.00014 4.8E-09 72.7 6.0 63 38-117 8-74 (302)
47 1jyk_A LICC protein, CTP:phosp 97.4 9.8E-05 3.4E-09 72.4 4.7 42 38-82 25-69 (254)
48 2ux8_A Glucose-1-phosphate uri 97.4 0.00012 4E-09 73.2 5.2 63 38-117 14-80 (297)
49 1vpa_A 2-C-methyl-D-erythritol 97.4 0.00014 4.7E-09 69.6 5.5 42 38-82 13-54 (234)
50 1e5k_A Molybdopterin-guanine d 97.3 0.00032 1.1E-08 66.2 6.5 40 38-81 6-45 (201)
51 2pa4_A UTP-glucose-1-phosphate 97.2 0.00023 7.8E-09 72.2 5.1 61 39-116 13-77 (323)
52 3d5n_A Q97W15_sulso; NESG, SSR 97.2 0.0002 6.8E-09 67.3 3.7 39 38-81 2-40 (197)
53 2xme_A CTP-inositol-1-phosphat 97.1 0.00041 1.4E-08 66.4 4.9 62 36-116 16-77 (232)
54 2px7_A 2-C-methyl-D-erythritol 97.0 0.00031 1.1E-08 67.8 3.9 37 38-78 25-61 (236)
55 3ngw_A Molybdopterin-guanine d 96.9 0.00041 1.4E-08 66.2 3.6 37 39-80 1-37 (208)
56 2e8b_A Probable molybdopterin- 96.8 0.00024 8.1E-09 67.0 0.6 40 38-82 14-53 (201)
57 2ggo_A 401AA long hypothetical 96.6 0.0017 5.6E-08 67.2 5.7 59 40-118 2-64 (401)
58 1w55_A ISPD/ISPF bifunctional 96.5 0.0016 5.5E-08 67.8 4.2 41 38-81 3-43 (371)
59 2dpw_A Hypothetical protein TT 96.2 0.0037 1.3E-07 60.0 5.1 41 38-82 2-45 (232)
60 2lll_A Lamin-B2; immunoglobuli 28.9 45 0.0015 29.5 3.8 26 497-522 47-74 (139)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=1.4e-122 Score=1005.58 Aligned_cols=500 Identities=36% Similarity=0.601 Sum_probs=454.0
Q ss_pred cccee--ecCCCcccccCCchHHHHHHHHhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 5 LLVII--LQVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 5 ~~~~~--~~vP~g~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
..++. |.+|.+..++.+++++.+|+++|+++|+|+|||+||||||||||+++||+++|+++.+++||||++++||+
T Consensus 79 ~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~-- 156 (630)
T 3ogz_A 79 FAALEMPPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ-- 156 (630)
T ss_dssp CSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGGGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH--
T ss_pred ccccccCCCCCccccccCCHHHHHHHHHHhHHHHhhceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH--
Confidence 36677 88999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHhhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCC
Q 009878 83 QESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHG 162 (523)
Q Consensus 83 ~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~G 162 (523)
++++. .|||+||||++||++|++||++ ||++++||+||+|+++||+++++|++++ +++++++|+|+|
T Consensus 157 -~~~g~-------~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l--~~~~~i~~~P~G 223 (630)
T 3ogz_A 157 -RVGGK-------EVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLAL--DETGKLLRKPHG 223 (630)
T ss_dssp -HHHCT-------TCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCB--CTTSSBCEECCC
T ss_pred -HHhCC-------CCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecCCCceee--cCCCcccCCCCC
Confidence 45554 8999999999999999999998 9999999999999999999878999999 556799999999
Q ss_pred CchhhHHHhhcC------------------hhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccCCc
Q 009878 163 HGDVHALLYSSG------------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKA 224 (523)
Q Consensus 163 hGdi~~~L~~sG------------------lld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~ 224 (523)
|||+|.+|+++| +|++|+++|++|+||+||||+|++++||.||||+++++++|++|||+|+|
T Consensus 224 hGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p 303 (630)
T 3ogz_A 224 HGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP 303 (630)
T ss_dssp TTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS
T ss_pred CHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC
Confidence 999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccccCcEEEEecCCCce-EEEEEeccCCCHHHHhcCCCCCC-CccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccc
Q 009878 225 KEAIGGITRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEF 302 (523)
Q Consensus 225 ~e~~G~i~~~~~~~G~~-~v~nvEYsel~~~~~~~~~~~g~-~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~ 302 (523)
+|++|++|++++.||++ +++||||+||++++++.++++|+ +.+.++|++||||||||||+|++|.+.+.++.+.+|+|
T Consensus 304 ~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~ 383 (630)
T 3ogz_A 304 KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEF 383 (630)
T ss_dssp SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCE
T ss_pred CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHhccCcccee
Confidence 99999999988889999 88889999999999999999998 88889999999999999999999999999888999999
Q ss_pred cCCcccCCCCCcccCcchhhhhhccccccCCCCC-ceeEEEecccceeecccCCCcccc-cCCCCCCCCChhhHHHHHHH
Q 009878 303 VNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSA-KVGFTVMDTWLAYAPVKNNPEDAA-KVPKGNPYHSATSGEMAIYC 380 (523)
Q Consensus 303 vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~-~vg~~~v~R~~~FsPvKn~~~~~~-~~~~~~~~ds~~t~~~dl~~ 380 (523)
+||||.|.+++.+++++||||||||++++|+.++ ++++++|+| +||+||||++++|+ |+++|++.|||.||++|||+
T Consensus 384 vNpK~~d~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~ 462 (630)
T 3ogz_A 384 INPKYSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYE 462 (630)
T ss_dssp ECCCBSSSSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHH
T ss_pred cCCcccCCcccccCcchhhhhHHHHHHHhccccCcceeEEEECC-CeeecccCChhHhhhhhccCCCcCChHHHHHHHHH
Confidence 9999999998889999999999999999997455 899999999 99999999999884 45999999999999999999
Q ss_pred HHHHHHHHcCCccc---CCcccccCCe-eecCCCeEEEcCCcCCC--HHHHhhhcCC--CCccCCCceEEEEeceEEecC
Q 009878 381 ANSLILRKAGAQVD---DPVQEVFNGQ-EVEVWPRLTWKPKWGLT--FSEIKNKVSG--SCSVSQKSTMVIKGRNVVLED 452 (523)
Q Consensus 381 ~~~~~L~~~g~~v~---~~~~~~~~~~-~~~~~P~i~l~p~~~~~--~~~~~~k~~~--~~~i~~~s~L~v~G~~~~~~~ 452 (523)
++++||++||++++ ++...+++|. +++.+|+|.|+|+|+.+ ++++++||++ +++|+++|+|+|+|+ ++++|
T Consensus 463 ~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~ 541 (630)
T 3ogz_A 463 LQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIES 541 (630)
T ss_dssp HHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSEEEECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESC
T ss_pred HHHHHHHHcCceecccccchhhhhcCccccCCCCEEEEeccccccccHHHHHHHhCCCCCceecCCcEEEEEEE-EEEEE
Confidence 99999999999988 4566678888 99999999999999999 9999999999 789999999999999 99999
Q ss_pred eEEeeEEEEEcCCCCe----eEeCCeeEccceeeeeC----CCCCCCCccceeeecceeeeeeeEEEEecCCCceec
Q 009878 453 LSLNGALIIDSVDDAE----VRVGGKVQNKGWTLEPV----DHKDTSVPEEIRIRGFKINKLEQLERSYSEPGKFSL 521 (523)
Q Consensus 453 v~l~G~viI~a~~~~~----~~i~~~v~N~g~~~~~~----~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~g~~~~ 521 (523)
|+|||+|+|.|++|++ |.++++|+|+||+|+++ +++|+++||++|||||+++|+|+++++|++||+|+.
T Consensus 542 l~LdG~lvI~a~~~~~~~~~v~~~~~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~~~~~~ 618 (630)
T 3ogz_A 542 LELYGALTIRGPTDSMALPHVVRNAVVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDCNTKGESEA 618 (630)
T ss_dssp EEEESEEEEECCSSTTSCCEEECSEEEECCCCEEEECCTTC----CCCCHHHHTTTEEEECCCCEEECC--------
T ss_pred EEEeeEEEEEcCCCCccCceEEecceEecCCcEEEEcccccccccCCCChhhcccceeEEeeeEEEEEecCCCcccc
Confidence 9999999999999999 88888999999999999 777889999999999999999999999999999974
No 2
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=1.4e-94 Score=770.19 Aligned_cols=401 Identities=20% Similarity=0.212 Sum_probs=352.9
Q ss_pred HhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHH
Q 009878 31 AGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 110 (523)
Q Consensus 31 ~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~ 110 (523)
.|+++|+|+|||+||||||||||+++||+++|++ +++||||++++||++++++++. .|||+||||+.||++
T Consensus 69 ~G~~~L~kvavvlLaGGlGTRLG~~~pKg~~~v~--sgksflql~~eqI~~l~~~~~~-------~iPl~IMTS~~T~~~ 139 (484)
T 3gue_A 69 ENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVK--NGQTFLDFTALQLEHFRQVRNC-------NVPFMLMNSFSTSGE 139 (484)
T ss_dssp CCHHHHTTEEEEEEECCCCGGGTCSSCGGGSEEE--TTEEHHHHHHHHHHHHHHHHTC-------CCCEEEEECTTTHHH
T ss_pred HHHHHHhhcEEEEEcCCcccccCCCCCceeeecC--CCCcHHHHHHHHHHHHHHHcCC-------CceEEEECCcchhHH
Confidence 6999999999999999999999999999999998 8999999999999999999876 899999999999999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEE
Q 009878 111 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 190 (523)
Q Consensus 111 t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~ 190 (523)
|++||++|+|||++++||++|+|+++||++.+++++++++ ++.+++|+|+||||+|.+|++||+|++|+++|+||+||+
T Consensus 140 T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~-~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~ 218 (484)
T 3gue_A 140 TKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYE-ADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFIS 218 (484)
T ss_dssp HHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCCCT-TCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhCcccCCCccceEEEEeCceeeEecCCCceeecC-CCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEE
Confidence 9999999999999999999999999999987666666544 445999999999999999999999999999999999999
Q ss_pred eCCCccccccchHHhHHHhhcCccceeeeccCCc-ccccCcEEEE-------ecCCCceEEEEEeccCCCHHHHhcCCCC
Q 009878 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKA-KEAIGGITRL-------THADGRSMVINVEYNQLDPLLRATGFPD 262 (523)
Q Consensus 191 ~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~-~e~~G~i~~~-------~~~~G~~~v~nvEYsel~~~~~~~~~~~ 262 (523)
|+|| |++++||.||||+++++++|++|||+|++ .|++|++|++ ++.+|++++ +||+|+|++.++.
T Consensus 219 ~vDN-L~a~~Dp~~lG~~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~dG~~~v--vEyseip~e~~~~---- 291 (484)
T 3gue_A 219 NGDN-LGATLDVRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVL--RESAQCPKEDEDS---- 291 (484)
T ss_dssp ETTC-TTCCCCHHHHHHHHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CCCEEEE--EEGGGSCGGGHHH----
T ss_pred cCCC-cccccCHHHHHHHHhcCCCEEEEEEECCCCCCceeEEEEEccccccccCCCCCEEE--EEeccCCHHHHhh----
Confidence 9999 99999999999999999999999999975 5567778886 346898877 9999999987653
Q ss_pred CCCccCCCCCCCccceeeEEEehhhhHHHHhhcCC--ccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeE
Q 009878 263 GDVNCETGYSPFPGNINQLILELGPYMEELKKTGG--AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGF 340 (523)
Q Consensus 263 g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g--~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~ 340 (523)
+.+.+||++| ||||+|+++.+|++++++..+ .||+|+|+|+.|..+...++++|||+||||++++|+ ++++
T Consensus 292 --f~~~~g~~~F--NtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~---~~~~ 364 (484)
T 3gue_A 292 --FQNIAKHCFF--NTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFD---RSEA 364 (484)
T ss_dssp --HTCTTTSCEE--EEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSS---SEEE
T ss_pred --hcCCCCceEe--EeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCC---ccEE
Confidence 2234567777 999999999999999998643 579999999999887778899999999999999884 4577
Q ss_pred EEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCcCC
Q 009878 341 TVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGL 420 (523)
Q Consensus 341 ~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~ 420 (523)
++|+| +||+||||++++. +++++.+.+.+......+.......|.|.|+|.+++
T Consensus 365 ieV~R-~rF~PvKn~sdLl-------------------------~~~Sdly~l~~~~~l~~~~~~~~~~P~v~L~~~~~~ 418 (484)
T 3gue_A 365 VVVPR-ERFAPVKTCSDLL-------------------------ALRSDAYQVTEDQRLVLCEERNGKPPAIDLDGEHYK 418 (484)
T ss_dssp EECCG-GGCCCCSSHHHHH-------------------------HHHSTTEEECTTSCEEECGGGTTCCCEEEECTTTSS
T ss_pred EEECh-hhccccccchHHH-------------------------HHhhhceeccCCceEEeccccCCCCCeEEECchhcC
Confidence 89999 8999999999873 345555555443222222222345799999999889
Q ss_pred CHHHHhhhcCC-CCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC--eeEcccee
Q 009878 421 TFSEIKNKVSG-SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGWT 481 (523)
Q Consensus 421 ~~~~~~~k~~~-~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~--~v~N~g~~ 481 (523)
++++|.+||++ +|+|+++|+|+|+|||+||+||+|+|+|+|.|++|.+++||+ +++|+-+.
T Consensus 419 ~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 419 MIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp SHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECSSSCEEECTTCEEESCEEE
T ss_pred cHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCCCCeeecCCCCEecceecC
Confidence 99999999998 899999999999999999999999999999999999999997 99998654
No 3
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=3.1e-90 Score=741.32 Aligned_cols=387 Identities=18% Similarity=0.200 Sum_probs=330.5
Q ss_pred HHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHH
Q 009878 33 VKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 112 (523)
Q Consensus 33 ~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~ 112 (523)
..+++|+|||+||||||||||+++||+++|+. +++||||++++||++++++|+. .|||+||||++||++|+
T Consensus 122 ~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~--sgktflql~~eqI~~l~~~~g~-------~IPl~IMTS~~T~~~T~ 192 (528)
T 3r3i_A 122 SSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVR--NENTFLDLTVQQIEHLNKTYNT-------DVPLVLMNSFNTDEDTK 192 (528)
T ss_dssp CTTCTTEEEEEECCCBCTTTTCSSBGGGSEEE--TTEEHHHHHHHHHHHHHHHHTC-------CCCEEEEECTTTHHHHH
T ss_pred hhhcCceEEEEeCCCCccccCCCCCccceecC--CCCcHHHHHHHHHHHHHHHhCC-------CCCEEEEeccchhHHHH
Confidence 34677999999999999999999999999996 8999999999999999999875 89999999999999999
Q ss_pred HHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCC----CCCccccccCCCchhhHHHhhcChhHHHHHCCceEEE
Q 009878 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK----NKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVL 188 (523)
Q Consensus 113 ~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~----~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~ 188 (523)
+||++|+||| .||++|+|+++||++. +|+++++.. ++++++|+|+||||+|.+|++||+|++|+++|+||+|
T Consensus 193 ~~f~k~~~fg---~~V~~F~Q~~~P~i~~-dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~ 268 (528)
T 3r3i_A 193 KILQKYNHCR---VKIYTFNQSRYPRINK-ESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIF 268 (528)
T ss_dssp SSCGGGTTSS---CCEEEEECCCBCCEET-TTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEE
T ss_pred HHHHhcCccC---CCeEEEEeCCeeeEec-CCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEE
Confidence 9999999998 5899999999999975 688888421 1679999999999999999999999999999999999
Q ss_pred EEeCCCccccccchHHhHHHhhc----CccceeeeccCC-cccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCC
Q 009878 189 FFQDTNGLLFKAIPASLGVSATK----QYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG 263 (523)
Q Consensus 189 v~~vDN~L~~~~dp~~lG~~~~~----~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g 263 (523)
|+|+||+++ .+||.||||++.+ +++|++|||+|+ |+|++|++|++ ||++++ |||+|+|++.++.
T Consensus 269 v~nvDNlga-~vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~---dGk~~v--vEyseip~e~~~~----- 337 (528)
T 3r3i_A 269 VSNIDNLGA-TVDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY---EGKLRL--VEIAQVPKAHVDE----- 337 (528)
T ss_dssp EEETTBTTC-CCCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS---SSSCEE--ECTTSSCGGGTTT-----
T ss_pred EEccCCccc-ccCHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE---CCeEEE--EEecCCChhHhhc-----
Confidence 999999765 5799999999998 999999999985 88999999986 999876 9999999886532
Q ss_pred CCccCCCCCCCc-cceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhccccccCCCCCceeEEE
Q 009878 264 DVNCETGYSPFP-GNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTV 342 (523)
Q Consensus 264 ~~~~~~g~~~f~-gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~vg~~~ 342 (523)
+++++.|+ ||||||||+|++|+++++.+.+.||+|+|||+.|.+ ++++|||++|||++++|++. ..++
T Consensus 338 ----~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~----~~viqlEt~igd~i~~f~~~---~~i~ 406 (528)
T 3r3i_A 338 ----FKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGG----LNVIQLETAVGAAIKSFENS---LGIN 406 (528)
T ss_dssp ----SSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSS----SCEEEEEBCSTTCSTTSSSC---CCEE
T ss_pred ----cCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCC----CCEEEeHHHHHHHHHhccCc---EEEE
Confidence 34444555 799999999999999999888889999999998753 57899999999999998654 3459
Q ss_pred ecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCcCCCH
Q 009878 343 MDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTF 422 (523)
Q Consensus 343 v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~ 422 (523)
|+|+ ||+||||++|+. ..++|+ +.+.+.....-..+.....|.|.|+|+ ++++
T Consensus 407 VpR~-rF~PvKn~sdLl-------------l~~Sdl------------y~l~~g~l~~~~~r~~~~~P~v~L~~~-~~~v 459 (528)
T 3r3i_A 407 VPRS-RFLPVKTTSDLL-------------LVMSNL------------YSLNAGSLTMSEKREFPTVPLVKLGSS-FTKV 459 (528)
T ss_dssp CCGG-GCCBCCSHHHHH-------------HHHSTT------------SEEETTEEECCSSCSSCCCCEEEECTT-SCSH
T ss_pred EehH-HcccccchHHHH-------------HHhcce------------eEeeCCeEEecccccCCCCCEEEeCcc-cCcH
Confidence 9995 599999999973 334444 444321111001123456799999999 5799
Q ss_pred HHHhhhcCCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC--eeEcccee
Q 009878 423 SEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGWT 481 (523)
Q Consensus 423 ~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~--~v~N~g~~ 481 (523)
++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|+|++|.+++||+ +++|+-+.
T Consensus 460 ~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~len~~v~ 520 (528)
T 3r3i_A 460 QDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVS 520 (528)
T ss_dssp HHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEEECCTTCEEEEEEEC
T ss_pred HHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCceecCCCCEEeccEEe
Confidence 999999999999999999999999999999999999999999999999997 99998554
No 4
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=1.4e-87 Score=724.81 Aligned_cols=402 Identities=18% Similarity=0.207 Sum_probs=353.9
Q ss_pred HHhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchH
Q 009878 30 QAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 109 (523)
Q Consensus 30 ~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e 109 (523)
..|+++|+++|+|+||||+|||||+++||+++|++ +|+||||+++++|++++.+|+. .|||+||||++||+
T Consensus 67 ~~g~~~l~k~avViLAGGlGTRLg~~~PK~llpV~--~gk~fLe~~ie~l~~~~~~~g~-------~ip~viMtS~~t~e 137 (505)
T 2oeg_A 67 ECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEVK--DGKTFLDFTALQVQYLRQHCSE-------HLRFMLMDSFNTSA 137 (505)
T ss_dssp CCCHHHHHTEEEEEEECCCCGGGTCCSCGGGSEEE--TTEEHHHHHHHHHHHHHHHTCT-------TCEEEEEECHHHHH
T ss_pred hHHHHHHhcceEEEEcCCcccccCCCCCCcccccC--CCCcHHHHHHHHHHHHHHhcCC-------CcCEEEEeCCCCHH
Confidence 37999999999999999999999999999999998 7999999999999999999875 79999999999999
Q ss_pred HHHHHHH-hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEE
Q 009878 110 RTQELLE-SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVL 188 (523)
Q Consensus 110 ~t~~~l~-~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~ 188 (523)
.|++||+ +|++||+++++|++|+|+++||++.++++++..+++ ..++|+|+||||+|.+|++||+|++|+++|++|++
T Consensus 138 ~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~-~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~ 216 (505)
T 2oeg_A 138 STKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAEN-PAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMF 216 (505)
T ss_dssp HHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTC-GGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEE
T ss_pred HHHHHHhhhhhccCCCccceEEEEEcCEEeEecCCCceeecCCC-CccccCcCCchHHHHHHHhcChHHHHHhcCCCEEE
Confidence 9999999 999999999999999999999999877787743444 46999999999999999999999999999999999
Q ss_pred EEeCCCccccccchHHhHHHhhcCccceeeeccCCccc-ccCcEEEEec-----CCCc-------eEEEEEeccCCCHHH
Q 009878 189 FFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKE-AIGGITRLTH-----ADGR-------SMVINVEYNQLDPLL 255 (523)
Q Consensus 189 v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e-~~G~i~~~~~-----~~G~-------~~v~nvEYsel~~~~ 255 (523)
|+|+|| |++.+||.|||||.+++++++++|++|+..+ +.|+++. ++ .||+ +.+ +||+|+|++.
T Consensus 217 V~N~DN-L~~~~D~~llg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~-~~~~~~~~dg~~nvEyn~~~l--lEyse~p~e~ 292 (505)
T 2oeg_A 217 VSNGDN-LGATIDKRVLAYMEKEKIDFLMEVCRRTESDKKGGHLAR-QTVYVKGKDGQPDAEKRVLLL--RESAQCPKAD 292 (505)
T ss_dssp EECTTC-TTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSEEEEE-EEEEECCSSSCCCEEEEEEEE--EEGGGSCGGG
T ss_pred EEECCc-cccccCHHHHHHHHhcCCcEEEEEEEecCCccceeEEEE-ecccccccCCccccccCceeE--EEeccCChhh
Confidence 999999 8999999999999999999999999998655 5555554 23 5898 765 9999998876
Q ss_pred HhcCCCCCCCccCCCCCCCc-cceeeEEEehhhhHHHHhhcCC--ccccccCCcccCCCCCcccCcchhhhhhccccccC
Q 009878 256 RATGFPDGDVNCETGYSPFP-GNINQLILELGPYMEELKKTGG--AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTL 332 (523)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~f~-gNinnl~~~l~~~~~~l~~~~g--~l~~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f 332 (523)
.+. ++|.+.|+ ||||||||+|++|+++++++.+ .||+|+|+|+.|..++..++++||||||||++++|
T Consensus 293 ~~~---------~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~ 363 (505)
T 2oeg_A 293 MES---------FQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF 363 (505)
T ss_dssp HHH---------HHCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC
T ss_pred hhc---------ccCccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc
Confidence 543 23455566 8999999999999999988543 56899999998876667788999999999999998
Q ss_pred CCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHH--HHHHHcCCcccCCcccccCCeeecCCC
Q 009878 333 PPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANS--LILRKAGAQVDDPVQEVFNGQEVEVWP 410 (523)
Q Consensus 333 ~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~--~~L~~~g~~v~~~~~~~~~~~~~~~~P 410 (523)
++ +++++|+|+ ||+||||+++ +.++++|+|.+++ +|+. +|.++ ..+|
T Consensus 364 ~~---~~~~~V~R~-~FsPvKn~~d-------------l~~~~sdly~~~~~~~~~~-~~~~~-------------~~~p 412 (505)
T 2oeg_A 364 ES---ASAIVVPRS-RFAPVKTCAD-------------LLALRSDAYVVTDDFRLVL-DDRCH-------------GHPP 412 (505)
T ss_dssp TT---CEEEECCGG-GCCCCSSHHH-------------HHHHHSTTEEECTTCCEEE-CGGGT-------------TCCC
T ss_pred Cc---ceEEEeccc-eeecccCCCC-------------HHHHHHHHHhhcCCceEEE-ccccc-------------CcCC
Confidence 54 488899997 9999999765 4689999999887 5654 55442 2479
Q ss_pred eEEEcCCcCCCHHHHhhhcCC-CCccCCCceEEEEeceEEecCeEEeeEEEEEcC-CCCeeEeCC--eeEccceeeeeC
Q 009878 411 RLTWKPKWGLTFSEIKNKVSG-SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSV-DDAEVRVGG--KVQNKGWTLEPV 485 (523)
Q Consensus 411 ~i~l~p~~~~~~~~~~~k~~~-~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~-~~~~~~i~~--~v~N~g~~~~~~ 485 (523)
.|.|+|.|++++++|++||++ +|+|+++|+|+|+|+++||+||+|+|+|+|.|+ +|++++||+ +|+|+||.....
T Consensus 413 ~i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~~~~~~~~ 491 (505)
T 2oeg_A 413 VVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASPQQS 491 (505)
T ss_dssp EEEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSCSSCEECCTTCEEESCEECC---
T ss_pred eEEEChhHcCcHHHHHHhcCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCCCCcEEeCCCCEEeCceechhhh
Confidence 999999999999999999998 799999999999999999999999999999999 999999965 999999986654
No 5
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=2.6e-82 Score=665.69 Aligned_cols=371 Identities=21% Similarity=0.271 Sum_probs=325.9
Q ss_pred chHHHHHHHHhHHhhc--ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccE
Q 009878 22 DDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPF 99 (523)
Q Consensus 22 ~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl 99 (523)
.++-++|+++|+++|+ |+|||+||||+|||||+++||+++|+++.+++||||+++++|+++|+++..+.+|..+.|||
T Consensus 17 ~~~~~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~ 96 (405)
T 3oc9_A 17 IPVTKEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHW 96 (405)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEE
T ss_pred CCccHHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCE
Confidence 3456789999999995 99999999999999999999999999888999999999999999999876432343458999
Q ss_pred EEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHH
Q 009878 100 AIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEW 179 (523)
Q Consensus 100 ~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l 179 (523)
+||||++||+.|++||++|+|||++++||++|+|+++||++ .+|++++ ++++.++|+|+||||+|.+|+++|+|++|
T Consensus 97 ~IMtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~-~dg~i~l--~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l 173 (405)
T 3oc9_A 97 FLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVD-FNGKILY--EKKDKPYMAPNGHGGLFKALKDNGILEFM 173 (405)
T ss_dssp EEEECTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBC-TTSCBCE--EETTEECEEECCGGGHHHHHHHTTHHHHH
T ss_pred EEEeCCccHHHHHHHHHhCcccCCCccceEEEeeCceeEEe-cCCCeec--CCCCccccccCCChHHHHHHHHCCcHHHH
Confidence 99999999999999999999999999999999999999995 7899999 66789999999999999999999999999
Q ss_pred HHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEecCCCceEEEEEeccCCCHHHHhc
Q 009878 180 HDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRAT 258 (523)
Q Consensus 180 ~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~ 258 (523)
+++|++|++|+|+||+|++++||.|||||++++++++++||+|+ |+|++|++|++ ||+.++ |||+|+|++ ++.
T Consensus 174 ~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~---dg~~~v--vEysei~~e-~e~ 247 (405)
T 3oc9_A 174 NEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKE---QERIKV--VEYTELTDE-LNK 247 (405)
T ss_dssp HHHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGCCTT-TTC
T ss_pred HhcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEE---CCeeEE--EEEeeCCHH-Hhh
Confidence 99999999999999999999999999999999999999999986 67999999987 998876 999999999 777
Q ss_pred CCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCCCC----cccCcchhhhhhcccccc
Q 009878 259 GFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKT----SFKSSTRLECMMQDYPKT 331 (523)
Q Consensus 259 ~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK---~~d~~~~----~~~~~~rLE~~m~D~~~~ 331 (523)
++++|++. +..+||++|+|++++|++++ ...||.|++.| |.|.++. +..+.+|||+||||++++
T Consensus 248 ~~~~g~l~------fn~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~ 318 (405)
T 3oc9_A 248 QLSNGEFI------YNCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPL 318 (405)
T ss_dssp BCTTSCBS------SCEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGG
T ss_pred cCCCCcee------eccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHh
Confidence 77666554 23689999999999999988 33689999877 4464432 234678999999999887
Q ss_pred CCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCe
Q 009878 332 LPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPR 411 (523)
Q Consensus 332 f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~P~ 411 (523)
+ .++.+++|+|++||+||||+++.+ .|||+|||+|++++|++||+++|+.+.+... ..+|++|+
T Consensus 319 ~---~~~~~~eV~R~~eF~PlKn~~g~~--------~dsp~tar~~l~~~~~~wl~~ag~~~~~~~~-----~~~Eispl 382 (405)
T 3oc9_A 319 A---TKVSIFEIQRFIEFSALKNSLNES--------FDNVNTVKRDWYRLNIYYLKKAGAIVDDSKS-----PICEISFR 382 (405)
T ss_dssp C---SCEEEEECCHHHHCCBCCCCTTSS--------SSSHHHHHHHHHHHHHHHHHHTTCEEECSSC-----CCEEECTT
T ss_pred c---cceEEEEEChHhcccceecCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCCEEcCCCC-----ccEEeCcc
Confidence 6 467888999999999999999864 8999999999999999999999999864321 35788899
Q ss_pred EEEcCCcCCCHHHHhhhc
Q 009878 412 LTWKPKWGLTFSEIKNKV 429 (523)
Q Consensus 412 i~l~p~~~~~~~~~~~k~ 429 (523)
++|+ |+.++.++.|.
T Consensus 383 ~sy~---ge~l~~~~~~~ 397 (405)
T 3oc9_A 383 KSFE---EEGLKEFKGKT 397 (405)
T ss_dssp TCSS---SGGGGGGTTCE
T ss_pred cccC---ccCccccCCcE
Confidence 9998 77777765543
No 6
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=3.2e-80 Score=667.69 Aligned_cols=388 Identities=22% Similarity=0.316 Sum_probs=337.8
Q ss_pred eecCCCccccc---CCchHHHHHHHHhHHhhc--ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHH
Q 009878 9 ILQVPTGEVLK---FGDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQ 83 (523)
Q Consensus 9 ~~~vP~g~~l~---~~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~ 83 (523)
.-.+|++..++ .+++++.+|+++|+++|+ |+|+|+||||+|||||+++||+++|+++++|+||||+++++|++++
T Consensus 69 i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~ 148 (486)
T 2yqc_A 69 FTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIE 148 (486)
T ss_dssp EECCCGGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHH
T ss_pred ccCCChhhccccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHH
Confidence 34488887644 466888999999999996 8999999999999999999999999998999999999999999999
Q ss_pred HHhhccccC--CcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCC-ceeecCCCCCcccccc
Q 009878 84 ESSCRLAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDA-RLAMDPKNKYRIQTKP 160 (523)
Q Consensus 84 ~~~~~~~~g--~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g-~~~l~~~~~~~i~~~P 160 (523)
++|... +| +...|||+||||++||+.|++||++|+|||++.++|+||+|+++||++. +| ++++ ++++.++|+|
T Consensus 149 ~~~~~~-~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l--~~~~~i~~~P 224 (486)
T 2yqc_A 149 QLAQQY-LKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILL--ELKNSICQSP 224 (486)
T ss_dssp HHHHHH-HTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCE--EETTEECEEE
T ss_pred HHhhhh-cCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcC-CCCcccc--CCCCccccCc
Confidence 998432 22 2337999999999999999999999999999999999999999999975 88 9999 5678999999
Q ss_pred CCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccC-CcccccCcEEEEecCCC
Q 009878 161 HGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADG 239 (523)
Q Consensus 161 ~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~~~~~~G 239 (523)
+||||+|.+|+++|+|++|+++|++|++|+|+||.|++++||.|||||+.++++++++||+| .|.|++|++|.+ ..||
T Consensus 225 ~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~-~~dg 303 (486)
T 2yqc_A 225 DGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD-QDNQ 303 (486)
T ss_dssp CCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE-TTTT
T ss_pred CCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE-ecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 588999999975 2478
Q ss_pred ceEEEEEeccCCCHHHHhcCCCC--CCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCc---cccccCCc---ccCCC
Q 009878 240 RSMVINVEYNQLDPLLRATGFPD--GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA---IKEFVNPK---YKDAS 311 (523)
Q Consensus 240 ~~~v~nvEYsel~~~~~~~~~~~--g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~---l~~~vnpK---~~d~~ 311 (523)
+.++ +||+|+++++++.++++ |.+ +++++|||||||++++|++++.+..+. ||+|+|+| |.|.+
T Consensus 304 ~~~v--vEy~E~~~~~~~~~~~~~~~~~------~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~ 375 (486)
T 2yqc_A 304 KPCV--IEYSEISQELANKKDPQDSSKL------FLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLE 375 (486)
T ss_dssp EEEE--ECGGGSCHHHHHCEETTEEEEE------SSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTT
T ss_pred CEEE--EEEecCCHHHhhcccccccccc------cccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCccccc
Confidence 8766 99999999988766543 333 345789999999999999978776667 99999998 77754
Q ss_pred CCc-----ccCcchhhhhhccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHH
Q 009878 312 KTS-----FKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLIL 386 (523)
Q Consensus 312 ~~~-----~~~~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L 386 (523)
.+. .++++||||||||++.+++ ..++++++|+|++|||||||+++.+ .|||+||+.|||++|++||
T Consensus 376 ~g~~~~p~~pn~~klE~~~~d~~~~~~-l~~~~~~~V~R~~~FsPvKn~~~~~--------~dsp~ta~~~l~~~~~~~l 446 (486)
T 2yqc_A 376 NGEFYKPTEPNGIKLEQFIFDVFPSVE-LNKFGCLEVDRLDEFSPLKNADGAK--------NDTPTTCRNHYLERSSKWV 446 (486)
T ss_dssp TCCEECCSSCCEEEEECCGGGGGGGSC-GGGEEEEEECHHHHCCBCCSCTTSS--------SSSHHHHHHHHHHHHHHHH
T ss_pred cCeeccCCCCCeeeeeehHhhHHhhcc-cCceEEEEECcccceeeecCCCCCC--------CCCHHHHHHHHHHHHHHHH
Confidence 332 3356899999999988763 1267899999999999999998864 8999999999999999999
Q ss_pred HHcCCcccCCcccccCCeeecCCCeEEEcCCcCCCHHHHhhh
Q 009878 387 RKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNK 428 (523)
Q Consensus 387 ~~~g~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k 428 (523)
++||+++.++ ..++++|+|+|+ |+.++.++.|
T Consensus 447 ~~aG~~~~~~-------~~~eisp~~sy~---ge~l~~~~~~ 478 (486)
T 2yqc_A 447 IQNGGVIDNQ-------GLVEVDSKTSYG---GEGLEFVNGK 478 (486)
T ss_dssp HHTTCEECTT-------CCCBCCTTTCSS---STTCGGGTTC
T ss_pred HHCCCeecCC-------CcEEEcceeeEC---CCCchhhcCc
Confidence 9999998643 247899999998 6667655544
No 7
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=1.3e-80 Score=667.31 Aligned_cols=412 Identities=17% Similarity=0.201 Sum_probs=353.1
Q ss_pred ceeecCCCcccccCCchHH-HHHHHHhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHH
Q 009878 7 VIILQVPTGEVLKFGDDTF-INYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQES 85 (523)
Q Consensus 7 ~~~~~vP~g~~l~~~~~~~-~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~ 85 (523)
++.| +|++...++++-.. .++++.|+++++++++|+||||+|||||++.||+++|+. +|+||||+++++|++++.+
T Consensus 48 ~i~p-~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vviLAGGlGTRLg~~~PK~llpv~--~gkp~Le~~i~~l~~~~~~ 124 (469)
T 2icy_A 48 KIQT-PTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVR--DGLTFLDLIVIQIENLNNK 124 (469)
T ss_dssp GCBC-CCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGGGSEEE--TTEEHHHHHHHHHHHHHHH
T ss_pred cccc-CCcccccChhhcccchhhHHHHHHhhccceEEEEcCCccccCCCCCCccccccC--CCCCHHHHHHHHHHHHHHh
Confidence 4455 77777777665432 466788999999999999999999999999999999996 6999999999999999988
Q ss_pred hhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeec-CCCCCccccccCCCc
Q 009878 86 SCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHG 164 (523)
Q Consensus 86 ~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhG 164 (523)
|+. .|||+||||++||+.|++||++|++||+ +|++|+|+++||++. +++++++ +.+++.++|+|+|||
T Consensus 125 ~G~-------~ip~vimts~~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~~-e~~~~l~~~~~~~~~e~~P~GtG 193 (469)
T 2icy_A 125 YGC-------KVPLVLMNSFNTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVVA-DEFVPWPSKGKTDKEGWYPPGHG 193 (469)
T ss_dssp HSC-------CCCEEEEECTTTHHHHHHHHGGGTTSSS---CEEEEECCCEECEET-TTTEEGGGGTCCSGGGEECCCGG
T ss_pred cCC-------CccEEEEeCCCCHHHHHHHHHhcccCCc---eEEEEEecceeeEcc-ccCccccCCCCCccccCCcCCch
Confidence 875 7999999999999999999999999998 699999999999986 7888884 344578999999999
Q ss_pred hhhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccCC-cccccCcEEEEecCCCceEE
Q 009878 165 DVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMV 243 (523)
Q Consensus 165 di~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~-~~e~~G~i~~~~~~~G~~~v 243 (523)
|+|.+|+++|+|++|+++|++|++|+|+|| |++.+||.|+|||.++++++++++++|+ |.++.|+++.+ +|+.++
T Consensus 194 G~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~~ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~---dg~~~v 269 (469)
T 2icy_A 194 DVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL 269 (469)
T ss_dssp GHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEE---TTEEEE
T ss_pred HHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCHHHHHHHHHcCCCeeEEEEEeccCCCceeEEEEE---CCEEEE
Confidence 999999999999999999999999999999 8999999999999999999999999986 56889999975 888766
Q ss_pred EEEeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhh
Q 009878 244 INVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLEC 323 (523)
Q Consensus 244 ~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~ 323 (523)
+||+|+|++..+. +.+..+|++| |||++||++++|+++++.....||.|+|||+.| + .+++|||+
T Consensus 270 --vE~~e~p~~~~~e------~k~~~~~~~~--N~g~y~~~~~~L~~i~~~~~~~lp~~v~~K~id--~---~~~~klE~ 334 (469)
T 2icy_A 270 --LEIAQVPDEHVNE------FKSIEKFKIF--NTNNLWVNLKAIKKLVEADALKMEIIPNPKEVD--G---VKVLQLET 334 (469)
T ss_dssp --ECGGGSCGGGHHH------HHSSSSCCEE--EEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEET--T---EEEECCBC
T ss_pred --EEEeccChhhhhh------hcccccccee--eEEEEEEcHHHHHHHHhcccCCchhhccceecC--C---CceEeehH
Confidence 9999999875432 1112346654 999999999999999988777899999999997 1 56899999
Q ss_pred hhccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCC
Q 009878 324 MMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNG 403 (523)
Q Consensus 324 ~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~ 403 (523)
||||++++|++ +..++|+|+ ||+||||+++. .++++|+|.+++ |..+.++ .
T Consensus 335 ~~~D~~~~~~~---~~~~~V~R~-~F~PvKn~~dl-------------l~~~s~l~~~~~------g~~~~~~------~ 385 (469)
T 2icy_A 335 AAGAAIRFFDN---AIGVNVPRS-RFLPVKASSDL-------------LLVQSDLYTLVD------GFVTRNK------A 385 (469)
T ss_dssp CGGGGGGGSTT---CEEEECCGG-GCCBCCSHHHH-------------HHHHSTTEEEET------TEEEECT------T
T ss_pred hhHHHHHhcCC---eEEEEechh-HcCcCCCHHHH-------------HHHHHHHHHHhc------CcEEecC------c
Confidence 99999998853 244589995 89999998765 244555444333 3322221 1
Q ss_pred eeecCCCeEEEcCCcCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC--eeEcccee
Q 009878 404 QEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGWT 481 (523)
Q Consensus 404 ~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~--~v~N~g~~ 481 (523)
+.++..|+|+|+|+| +++++|.+||+++|+|.++|||+|+|||+||+||+|+|+|+|.|++|.+++||+ +++|+.+.
T Consensus 386 ~~~~~~P~v~l~~~~-~~v~~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~ 464 (469)
T 2icy_A 386 RTNPSNPSIELGPEF-KKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNIN 464 (469)
T ss_dssp CCSSSCCEEEECGGG-CSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCTTCEEEECTTCEEESCEEC
T ss_pred ccCCCCCeEEcChhh-hhHHHHHHhcCCCcccccCCeEEEEeeeEEcCCcEEEEEEEEEcCCCCeeecCCCCEeecceee
Confidence 236789999999995 699999999999999999999999999999999999999999999999999997 99999764
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-77 Score=641.90 Aligned_cols=411 Identities=18% Similarity=0.187 Sum_probs=345.9
Q ss_pred eeecCCCcccccCCchHHHHHHHHhHHhhcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhh
Q 009878 8 IILQVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 87 (523)
Q Consensus 8 ~~~~vP~g~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~ 87 (523)
+.| +|++...++.+-.. ++ .|+.+++|+|+|+||||+|||||++.||+++|+. +|+||||++++++++++..++
T Consensus 66 i~p-~~~~~~~~~~~~~~--~~-~~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V~--~gk~~Le~~i~~i~~l~~~~G 139 (488)
T 2i5k_A 66 IKS-PNPDEVVKYEIISQ--QP-ENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVR--EGNTFLDLSVRQIEYLNRQYD 139 (488)
T ss_dssp EEC-CCTTTEEEHHHHHS--SC-CCSTTGGGEEEEEECCCBSGGGTCCSBSTTSCCB--TTBCHHHHHHHHHHHHHHHHT
T ss_pred ccc-CChhcccChhhccc--ch-hhhhhcCCceEEEEcCCCcccCCCCCCccccccC--CCCcHHHHHHHHHHHhHHhcC
Confidence 344 66665555433111 11 3888889999999999999999999999999995 699999999999999988886
Q ss_pred ccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeec-CCCCCccccccCCCchh
Q 009878 88 RLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDV 166 (523)
Q Consensus 88 ~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi 166 (523)
. .|||+||||++||+.|++||+++++||+ +|++|.|+++||++. +|++++. +.+++.++|+|+||||+
T Consensus 140 ~-------~Ip~vImts~~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~-d~~~~l~~~~~~~~~~~~P~GtGga 208 (488)
T 2i5k_A 140 S-------DVPLLLMNSFNTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVYK-DSLLPVPTEYDSPLDAWYPPGHGDL 208 (488)
T ss_dssp C-------CCEEEEECCTTTHHHHHHHHGGGCSSSC---EEEEECCCCEECEET-TTCCBSCSSSSSCTTSEECCCGGGH
T ss_pred C-------CccEEEEECCCCHHHHHHHHHhccccCc---eEEEEEeCccceEcc-ccceeeccCCCCCceeeecCCCchh
Confidence 5 7999999999999999999999999997 699999999999975 7888884 22345799999999999
Q ss_pred hHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccC-CcccccCcEEEEecCCCceEEEE
Q 009878 167 HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVIN 245 (523)
Q Consensus 167 ~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~~~~~~G~~~v~n 245 (523)
|.+|+.+|++++|.++|++|++|+|+|| |++..||.+||+|..++++++++++++ .|.+++|.+++. +|+.++
T Consensus 209 ~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~---dG~~~i-- 282 (488)
T 2i5k_A 209 FESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISY---DGQVRL-- 282 (488)
T ss_dssp HHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE---TTEEEE--
T ss_pred hhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE---CCcEEE--
Confidence 9999999999999999999999999999 999999999999999999999999997 588889999875 888554
Q ss_pred EeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhh
Q 009878 246 VEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMM 325 (523)
Q Consensus 246 vEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK~~d~~~~~~~~~~rLE~~m 325 (523)
|||+|++++.++... +..+|+.| |||++||++++|++++++....||.|+|+|+.+. .....+++||||||
T Consensus 283 VE~~e~~~e~~~~~~------~~~~~~~~--Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~~~~~~~~qlE~~~ 353 (488)
T 2i5k_A 283 LEVAQVPKEHIDEFK------NIRKFTNF--NTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-DGHEINVLQLETAC 353 (488)
T ss_dssp ECGGGSCTTSHHHHT------CTTTCCEE--EEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC------CEECCBCCG
T ss_pred EEeccCCHHHHhhcc------cccccCEE--EEEEEEEeHHHHHHHHhhccCCCcceecCccccC-CCCCCceEEeeehh
Confidence 999999988665332 12346654 9999999999999999987788999999998752 22335789999999
Q ss_pred ccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCee
Q 009878 326 QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQE 405 (523)
Q Consensus 326 ~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v~~~~~~~~~~~~ 405 (523)
||++++|++ . ..++|+|+ ||+||||++++ .++++++|.++ +|..+..+ ..
T Consensus 354 ~d~~~~~~~--~-~~~~V~R~-~F~PvKn~~~l-------------l~~~~~~~~~~------~g~~~~~~-------~~ 403 (488)
T 2i5k_A 354 GAAIRHFDG--A-HGVVVPRS-RFLPVKTCSDL-------------LLVKSDLFRLE------HGSLKLDP-------SR 403 (488)
T ss_dssp GGGGGGSSS--C-EEEEECGG-GCCBCCSHHHH-------------HHHTSTTEEEE------TTEEEECT-------TC
T ss_pred hhHHhhccC--c-eEEEeccc-ccccccCCccH-------------HHHHHHHHHHh------cCcEeecC-------Cc
Confidence 999999853 2 44589996 89999998765 35555555444 45443222 12
Q ss_pred ecCCCeEEEcCCcCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEeeEEEEEcCCCCeeEeCC--eeEcccee
Q 009878 406 VEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGWT 481 (523)
Q Consensus 406 ~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~viI~a~~~~~~~i~~--~v~N~g~~ 481 (523)
++.+|+|+|++.| .++++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|.|++|.+++||+ +|+|+++.
T Consensus 404 ~e~~P~v~~~~~~-~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~ 480 (488)
T 2i5k_A 404 FGPNPLIKLGSHF-KKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT 480 (488)
T ss_dssp CSSCCEEEECGGG-SSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEEEEEE
T ss_pred CCCCCeEEECCcc-cchhhHHhhcCCCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEecceee
Confidence 6789999999996 589999999999999999999999999999999999999999999999999976 99999876
No 9
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=3.4e-75 Score=630.76 Aligned_cols=388 Identities=22% Similarity=0.295 Sum_probs=335.1
Q ss_pred ecCCCcccccC--CchHHHHHHHHhHHhhc--ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHH
Q 009878 10 LQVPTGEVLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQES 85 (523)
Q Consensus 10 ~~vP~g~~l~~--~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~ 85 (523)
-.+|++...++ +.+++.+|+++|+++|+ |+|+|+||||+|||||++.||+++|+++.+|+||||+++++|+++|++
T Consensus 70 ~p~p~~~~~~~~~~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~l 149 (505)
T 1jv1_A 70 EPVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQV 149 (505)
T ss_dssp BCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHH
T ss_pred cCCChHhcccccCChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHH
Confidence 34888777655 56788999999999984 999999999999999999999999998778999999999999999888
Q ss_pred hhccccCCcCcccEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCch
Q 009878 86 SCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD 165 (523)
Q Consensus 86 ~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd 165 (523)
+.+. +|....+||+||||++||+.|++||++|+|||+++++|++|+|+++||+++ +|++++ ++++.++|+|+||||
T Consensus 150 a~~~-~G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~-~g~~~l--~~~~~~e~~P~GtGG 225 (505)
T 1jv1_A 150 AEKY-YGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSF-DGKIIL--EEKNKVSMAPDGNGG 225 (505)
T ss_dssp HHHH-HSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEET-TSCBCE--EETTEECEEECCGGG
T ss_pred HHHh-cCCCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcC-CCcccc--cCCcccccCCCCchH
Confidence 6432 343347999999999999999999999999999999999999999999975 899999 667899999999999
Q ss_pred hhHHHhhcChhHHHHHCCceEEEEEeCCCccccccchHHhHHHhhcCccceeeeccC-CcccccCcEEEEecCCCceEEE
Q 009878 166 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVI 244 (523)
Q Consensus 166 i~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r-~~~e~~G~i~~~~~~~G~~~v~ 244 (523)
+|.+|+++|+|++|+++|++|++|+|+||+|++++||.|+|||+.++++++++|++| .+.+++|++|.. +|+.++
T Consensus 226 ~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~---dg~~~v- 301 (505)
T 1jv1_A 226 LYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV---DGVYQV- 301 (505)
T ss_dssp HHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE-
T ss_pred HHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE---CCeEEE-
Confidence 999999999999999999999999999998899999999999999999999999985 688999999986 898766
Q ss_pred EEeccCCCHHHHhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCCCC----cccC
Q 009878 245 NVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKT----SFKS 317 (523)
Q Consensus 245 nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gNinnl~~~l~~~~~~l~~~~g~l~~~vnpK---~~d~~~~----~~~~ 317 (523)
|||+|+|++.++.++++|.+. +.++|||||||++++++++.+...+.||+|+|+| |.|.++. +.++
T Consensus 302 -vEy~E~p~~~~~~~~~~g~~~------~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn 374 (505)
T 1jv1_A 302 -VEYSEISLATAQKRSSDGRLL------FNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPN 374 (505)
T ss_dssp -ECGGGSCHHHHHCBCTTSSBS------SCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCC
T ss_pred -EEEeeCCHHHhhhcccccccc------cceeeEEEEEecHHHHHHHHHhhcccCCceecccccccccCCCCCcCCCCCC
Confidence 999999999988777666543 3368999999999999998887667899999998 6675332 1234
Q ss_pred cchhhhhhccccccCCCCCceeEEEecccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcc-cCC
Q 009878 318 STRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQV-DDP 396 (523)
Q Consensus 318 ~~rLE~~m~D~~~~f~~~~~vg~~~v~R~~~FsPvKn~~~~~~~~~~~~~~ds~~t~~~dl~~~~~~~L~~~g~~v-~~~ 396 (523)
.+||||||||++++| .++++++|+|++||+||||+++.+ | .|||+||+.|||++|++||++||+++ ++.
T Consensus 375 ~~klE~~i~d~~~~~---~~~~~~~V~R~~~FsPvKn~~~~~-----~--~dsp~ta~~~l~~~~~~~l~~ag~~~~~~~ 444 (505)
T 1jv1_A 375 GIKMEKFVFDIFQFA---KKFVVYEVLREDEFSPLKNADSQN-----G--KDNPTTARHALMSLHHCWVLNAGGHFIDEN 444 (505)
T ss_dssp EEEEECCGGGGGGGC---SSEEEEEECHHHHCCBCCSCTTSS-----S--SSSHHHHHHHHHHHHHHHHHHTTCEEBCTT
T ss_pred ceeHHHHHHHHHhhc---CceEEEEECcccceeeccCCCCCC-----C--CCCHHHHHHHHHHHHHHHHHHCCCeecccc
Confidence 579999999998876 367889999988999999999852 1 79999999999999999999999998 332
Q ss_pred cc----------cccCCeeecCCCeEEEcCCcCCCHHHH
Q 009878 397 VQ----------EVFNGQEVEVWPRLTWKPKWGLTFSEI 425 (523)
Q Consensus 397 ~~----------~~~~~~~~~~~P~i~l~p~~~~~~~~~ 425 (523)
.. .......++++|+|+|. |+.++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~Eisp~~sy~---ge~l~~~ 480 (505)
T 1jv1_A 445 GSRLPAIPRLKDANDVPIQCEISPLISYA---GEGLESY 480 (505)
T ss_dssp CCBCCSSCCCCSTTCCCCCEEECTTTCSS---SCSCHHH
T ss_pred cccccccccccccccCCCeEEECCccccC---CCCchHH
Confidence 10 00111247888999888 7778876
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.11 E-value=9.3e-10 Score=118.80 Aligned_cols=192 Identities=20% Similarity=0.211 Sum_probs=132.3
Q ss_pred cceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHH
Q 009878 37 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 37 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~ 116 (523)
..+|||+||||.||||....||.++|+. ||+++++.++.+..+ .+--+++...+..+.++++|+
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~l~pv~---gkp~i~~~l~~~~~~-------------g~~~i~vv~~~~~~~i~~~~~ 74 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKVLHTLA---GRSMLSHVLHAIAKL-------------APQRLIVVLGHDHQRIAPLVG 74 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGGGCEET---TEEHHHHHHHHHHHH-------------CCSEEEEEECTTHHHHHHHHH
T ss_pred CCceEEEECCcCcccCCCCCCHHHeEEC---ChhHHHHHHHHHHhC-------------CCCEEEEEeCCCHHHHHHHHH
Confidence 3789999999999999999999999996 999999999998776 344344444577889999998
Q ss_pred hC-CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCc
Q 009878 117 SN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 195 (523)
Q Consensus 117 ~~-~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~ 195 (523)
+. +.+|.+ |.+..| ..|.|.|+....... .+.+.-...+++.+.|.+
T Consensus 75 ~~~~~~~~~---i~~~~q------------------------~~~lGTa~Av~~a~~-----~l~~~~~~~~lvl~gd~~ 122 (501)
T 3st8_A 75 ELADTLGRT---IDVALQ------------------------DRPLGTGHAVLCGLS-----ALPDDYAGNVVVTSGDTP 122 (501)
T ss_dssp HHHHHHTSC---CEEEEC------------------------SSCCCHHHHHHHHHT-----TSCTTCCSEEEEEETTCT
T ss_pred HHHHhcCCc---EEEEEc------------------------CCCCCcHHHHHHHHH-----HhccccccceeeecCcce
Confidence 63 345542 333322 346788886554322 222233456777777776
Q ss_pred ccccc-chHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCC
Q 009878 196 LLFKA-IPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 274 (523)
Q Consensus 196 L~~~~-dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f 274 (523)
|.... .-.++-++..++.++++.+++-..-...|.+.+ +.+|+.. ..+|..+-++.-.+- .
T Consensus 123 l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~--~~~g~v~-~ivEk~~~~~~~~~i---------------~ 184 (501)
T 3st8_A 123 LLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILR--TQDHEVM-AIVEQTDATPSQREI---------------R 184 (501)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCEE-EEECGGGCCHHHHHC---------------C
T ss_pred eecHHHHHHHHHHHhhccccceEeeeccCCchhcccccc--ccceeEE-eeccccCCChhhccc---------------e
Confidence 75432 345678888889998888777544456787665 4567653 238887766653321 1
Q ss_pred ccceeeEEEehhhhHHHHhh
Q 009878 275 PGNINQLILELGPYMEELKK 294 (523)
Q Consensus 275 ~gNinnl~~~l~~~~~~l~~ 294 (523)
-.|+..++|+-+.+.+.+.+
T Consensus 185 ~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 185 EVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHTT
T ss_pred eeeceeeeecchhHHHhhhh
Confidence 24999999999988877754
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=98.54 E-value=9.7e-07 Score=86.71 Aligned_cols=185 Identities=17% Similarity=0.108 Sum_probs=114.4
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+ +|.++|+. |||++++.++++.+.. --.++|.| + ++.+.+++++
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i~---GkPli~~~l~~l~~~~------------~~~ivVv~-~--~~~i~~~~~~ 60 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADIG---GKPMIQWVYEQAMQAG------------ADRVIIAT-D--DERVEQAVQA 60 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT------------CSEEEEEE-S--CHHHHHHHHH
T ss_pred ceEEEEecCcCCCCCC---CcceeeEC---CEEHHHHHHHHHHhCC------------CCeEEEEC-C--HHHHHHHHHH
Confidence 5789999999999995 79999996 9999999999987641 11345555 2 5889999985
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
||.+ + .+ .....|.|.|.++.++.. +...+-+++++.+.|++|.
T Consensus 61 ---~g~~---v------------------~~------~~~~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli 104 (252)
T 3oam_A 61 ---FGGV---V------------------CM------TSPNHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLI 104 (252)
T ss_dssp ---TTCE---E------------------EE------CCTTCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTC
T ss_pred ---cCCE---E------------------EE------cCCCCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeec
Confidence 4431 1 11 011246777877665532 2112467899999999876
Q ss_pred cccc-hHHhHHHhhcCccceeeeccC-Ccccc----cCcEEEEecCCCceEEEEEeccC--CC--HH-HHhcCCCCCCCc
Q 009878 198 FKAI-PASLGVSATKQYHVNSLAVPR-KAKEA----IGGITRLTHADGRSMVINVEYNQ--LD--PL-LRATGFPDGDVN 266 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~~~~~~~~vv~r-~~~e~----~G~i~~~~~~~G~~~v~nvEYse--l~--~~-~~~~~~~~g~~~ 266 (523)
...+ -.++..+.++++++++.+++- .|.+- .|.++. +.+|+. +.+++ ++ +. ..++.. ...
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~--d~~g~v----~~fsr~~i~~~~~~~~~~~~---~~~ 175 (252)
T 3oam_A 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVIT--DKSGYA----LYFSRATIPWDRDNFAKADK---AIV 175 (252)
T ss_dssp CHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEE--CTTSBE----EEEESSCSSCCHHHHHSSSC---CCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEE--CCCCeE----EEEeCCCCCCCCCccccccc---ccc
Confidence 4432 345666666778888877763 33322 244443 456753 33443 22 11 001110 000
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHh
Q 009878 267 CETGYSPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 267 ~~~g~~~f~gNinnl~~~l~~~~~~l~ 293 (523)
.+ +-.|+....|+-+++.+...
T Consensus 176 ----~~-~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 176 ----QP-LLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp ----SC-EEEEEEEEEEETTHHHHHHH
T ss_pred ----cc-ceEEEEEEEcCHHHHHHHHc
Confidence 12 23599999999998877664
No 12
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=98.48 E-value=1.8e-06 Score=85.40 Aligned_cols=179 Identities=16% Similarity=0.143 Sum_probs=113.1
Q ss_pred ceEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~ 113 (523)
++.+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+ .++|.|.....+.+.+
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~iivv~~~~~~~~~~~ 87 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPVG---RYPMIYHAVYKLKQC-------------DITDIMIITGKEHMGDVVS 87 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEET---TEEHHHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHH
T ss_pred CcEEEEECCCCccccccccCCCCceecEEC---CEEHHHHHHHHHHHC-------------CCCEEEEECChhhHHHHHH
Confidence 67899999999999986 8899999995 999999999998764 23 3455555444577888
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
+++....+|+. +.+. . ...+.|.|+..... ++.+ +-++++|.+.|
T Consensus 88 ~~~~~~~~~~~---i~~~----------------~--------~~~~~G~~~al~~a-----~~~~---~~~~~lv~~~D 132 (269)
T 4ecm_A 88 FLGSGQEFGVS---FTYR----------------V--------QDKAGGIAQALGLC-----EDFV---GNDRMVVILGD 132 (269)
T ss_dssp HHTTSGGGTCE---EEEE----------------E--------CSSCCCHHHHHHTT-----HHHH---TTSEEEEEETT
T ss_pred HHhhccccCce---EEEe----------------e--------CCccCcHHHHHHHH-----HHhc---CCCcEEEEeCC
Confidence 88765455542 2111 0 11245665544432 2222 24688899999
Q ss_pred CccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCC
Q 009878 194 NGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 273 (523)
Q Consensus 194 N~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~ 273 (523)
.++ ....-.++..+.+++.++++.+++.......|.+.. + +|+. +++.|=|. .+ . .
T Consensus 133 ~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d-~g~v----~~~~ekp~------~~----~------~ 188 (269)
T 4ecm_A 133 NIF-SDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANI--Q-NRKI----IEIEEKPK------EP----K------S 188 (269)
T ss_dssp EEE-SSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEE--E-TTEE----EEEEESCS------SC----S------C
T ss_pred ccC-ccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEE--c-CCEE----EEEEECCC------CC----C------C
Confidence 855 344456777888888888877776544445665543 2 4543 23322110 01 0 1
Q ss_pred CccceeeEEEehhhhHHHH
Q 009878 274 FPGNINQLILELGPYMEEL 292 (523)
Q Consensus 274 f~gNinnl~~~l~~~~~~l 292 (523)
+..|++..+|+-+.+ +.+
T Consensus 189 ~~~~~Giy~~~~~~l-~~l 206 (269)
T 4ecm_A 189 SYAVTGIYLYDSKVF-SYI 206 (269)
T ss_dssp SEEEEEEEEECTTHH-HHH
T ss_pred cEEEEEEEEECHHHH-Hhh
Confidence 135999999997754 344
No 13
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=98.41 E-value=2.2e-06 Score=90.76 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=111.1
Q ss_pred ceEEEEecCCCCccCC---cCCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHH
Q 009878 38 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQ 112 (523)
Q Consensus 38 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~ 112 (523)
++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++.+. .+. ++|.| .+.++.+.
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi~---g~~pli~~~l~~l~~~-------------g~~~i~vv~-~~~~~~i~ 82 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS-------------NISKIYVLT-QFNSASLN 82 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEET---TTEETTHHHHHHHHHT-------------TCCEEEEEE-SCCCHHHH
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEEC---CcceeHHHHHHHHHHC-------------CCCEEEEEe-ccCHHHHH
Confidence 5789999999999998 57899999996 88 9999999988754 233 44555 45677888
Q ss_pred HHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeC
Q 009878 113 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 192 (523)
Q Consensus 113 ~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~v 192 (523)
++|.+. +|.+-. .++.++.+..+... ..+ .-...+.|.|+..... ++.+...+-+++++.+.
T Consensus 83 ~~~~~~--~~~~~~--~~~~~~~v~i~~~~--------~~~-~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~ 144 (451)
T 1yp2_A 83 RHLSRA--YASNMG--GYKNEGFVEVLAAQ--------QSP-ENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAG 144 (451)
T ss_dssp HHHHHH--CC----------CCEEEEEESC--------SST-TSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECS
T ss_pred HHHhhh--hhcccc--cccccCcEEEeccc--------ccc-cccccccCcHHHHHHH-----HHHHHhcCCCeEEEecC
Confidence 888753 221000 01122222222100 000 0012245766654432 23333234578999999
Q ss_pred CCccccccchHHhHHHhhcCccceeeeccCC--cccccCcEEEEecCCCceEEEEEeccCCCHHHHhc--CCCCCCCccC
Q 009878 193 TNGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRAT--GFPDGDVNCE 268 (523)
Q Consensus 193 DN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~--~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~--~~~~g~~~~~ 268 (523)
|. +.....-.++..+.++++++++-+.+.. +....|.+. + +.+|+. +++.|=|....+. ..+ .++...
T Consensus 145 D~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~-~-d~~~~v----~~~~ekp~~~~~~~~~~~-~~~l~~ 216 (451)
T 1yp2_A 145 DH-LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMK-I-DEEGRI----IEFAEKPQGEQLQAMKVD-TTILGL 216 (451)
T ss_dssp CE-ECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEE-E-CTTSBE----EEEEESCCHHHHHHTCCC-GGGGSC
T ss_pred cE-EEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEE-E-CCCCCE----EEEEECCCchhhcccccc-cccccc
Confidence 98 5443334678888888888776555432 334566543 3 344543 3343322211000 000 000000
Q ss_pred C----CCCCCccceeeEEEehhhhHHHHhh
Q 009878 269 T----GYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 269 ~----g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
. .-..+..|+...+|+-+.+.+.+++
T Consensus 217 ~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 217 DDKRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp CHHHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 0 0001235999999999877666654
No 14
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=98.39 E-value=3.4e-06 Score=88.60 Aligned_cols=203 Identities=12% Similarity=0.103 Sum_probs=115.9
Q ss_pred hcceEEEEecCCCCccCC---cCCCcccccccCCCCc-chHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHH
Q 009878 36 AKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 111 (523)
Q Consensus 36 l~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-sfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t 111 (523)
..++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++.+. .+.-++....+.++.+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~---gk~pli~~~l~~l~~~-------------gi~~i~vv~~~~~~~i 73 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFG---GKARIIDFALSNALNS-------------GIRRIGVATQYKAHSL 73 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEET---TTEETHHHHHHHHHHT-------------TCCEEEEEECTTCHHH
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccC---CCCcHHHHHHHHHHhC-------------CCCeEEEEeCCChHHH
Confidence 346888999999999998 67899999996 99 9999999998764 2333344444566889
Q ss_pred HHHHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCcccccc---CCCchhhHHHhhcChhHHHHHCCceEEE
Q 009878 112 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKP---HGHGDVHALLYSSGLLKEWHDAGLKWVL 188 (523)
Q Consensus 112 ~~~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P---~GhGdi~~~L~~sGlld~l~~~G~~yi~ 188 (523)
.+++++. ||+... +.+..++.+.. . .....| .|.++..... ++.+...+-++++
T Consensus 74 ~~~~~~~--~~~~~~----~~~~~v~i~~~---------~---~~~~~~~~~~Gt~~al~~a-----~~~l~~~~~~~~l 130 (420)
T 3brk_X 74 IRHLQRG--WDFFRP----ERNESFDILPA---------S---QRVSETQWYEGTADAVYQN-----IDIIEPYAPEYMV 130 (420)
T ss_dssp HHHHHHH--SCCCCG----GGTCEEEEECC---------C----------CCCCHHHHHHTT-----HHHHHHHCCSEEE
T ss_pred HHHHhhh--hccccc----cccCCEEEeCc---------c---ccccCCccccCCHHHHHHH-----HHHHHhcCCCEEE
Confidence 9999864 454210 00111111110 0 000012 4665544432 3444433457888
Q ss_pred EEeCCCccccccchHHhHHHhhcCccceeeeccC--CcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCc
Q 009878 189 FFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVN 266 (523)
Q Consensus 189 v~~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r--~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~ 266 (523)
+.+.|. +.....-.++..+.++++++++.+.+. ......|.+.. +.+|+. +++.|=|.. + ....
T Consensus 131 v~~~D~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~g~v----~~~~ekp~~------~-~~~~ 196 (420)
T 3brk_X 131 ILAGDH-IYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHV--NEKDEI----IDFIEKPAD------P-PGIP 196 (420)
T ss_dssp EEESSC-EECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEE--CTTSBE----EEEEESCSS------C-CCBT
T ss_pred EecccE-EEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEE--CCCCcE----EEeEeCCCc------c-cccc
Confidence 999998 544333457778877888876665542 23334565542 345653 233321110 0 0000
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHh
Q 009878 267 CETGYSPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 267 ~~~g~~~f~gNinnl~~~l~~~~~~l~ 293 (523)
+.. ..+..|+...+|+-+.+.+.+.
T Consensus 197 ~~~--~~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 197 GNE--GFALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp TBT--TEEEEEEEEEEEEHHHHHHHHT
T ss_pred ccc--cceEEeeeeEEEeHHHHHHHHH
Confidence 000 0123599999999887766664
No 15
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=98.30 E-value=6.2e-06 Score=82.96 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=93.8
Q ss_pred ceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~ 113 (523)
++.+|+||||.||||+ ...||.++|+. |++++++.++.+... .+. ++|.|+.+..+.+.+
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~I~vv~~~~~~~~i~~ 65 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVY---DKPMIYYPLSTLMLA-------------GIREILIISTPQDTPRFQQ 65 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEET---TEETTHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHH
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeEC---CEeHHHHHHHHHHHC-------------CCCEEEEEeccccHHHHHH
Confidence 3568899999999998 46799999996 999999999988653 233 455676777788899
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
++.+...||++ +.+. . ...|.|.++.+.... +.+ . + +.+.+...|
T Consensus 66 ~l~~g~~~g~~---i~~~----------------~--------~~~~~G~~~al~~a~-----~~i-~-~-~~~~lv~gD 110 (293)
T 1fxo_A 66 LLGDGSNWGLD---LQYA----------------V--------QPSPDGLAQAFLIGE-----SFI-G-N-DLSALVLGD 110 (293)
T ss_dssp HHTTSGGGTCE---EEEE----------------E--------CSSCCCGGGHHHHTH-----HHH-T-T-SEEEEEETT
T ss_pred HHhcccccCce---EEEe----------------e--------CCCCCCHHHHHHHHH-----HHh-C-C-CCEEEEECC
Confidence 98765445542 2211 1 112667776655432 222 1 2 444555589
Q ss_pred CccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCce
Q 009878 194 NGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRS 241 (523)
Q Consensus 194 N~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~ 241 (523)
|++.....-.++..+.+++.+..+-+++-...++.|++.. +.+|+.
T Consensus 111 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~v 156 (293)
T 1fxo_A 111 NLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEF--DQGGKA 156 (293)
T ss_dssp EEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEE--CTTSCE
T ss_pred hhccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEE--CCCCcE
Confidence 9775433345666665555555554444332345665543 345653
No 16
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=98.29 E-value=4.5e-06 Score=84.31 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=104.2
Q ss_pred ceEEEEecCCCCccCC---c-CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLG---Y-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG---~-~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
++.+|+||||.||||+ . ..||.++|+. .|++++++.++++... . -.++|.|.....+.+.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~--gg~pli~~~l~~l~~~---~----------~~i~vv~~~~~~~~i~~ 68 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLF--DHKSLFELSFKRNASL---V----------DETLIVCNEKHYFLALE 68 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTB--TTBCHHHHHHHHHHTT---C----------SEEEEEEEGGGHHHHHH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECC--CCCCHHHHHHHHHHcc---C----------CCEEEEEChhHHHHHHH
Confidence 5678999999999996 2 5799999993 3999999999988653 1 14567776655578888
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
+++++ ||++ ++.+..| ..|.|.|+....... .+ ..-.++++.+.|
T Consensus 69 ~~~~~--~~~~--~~~~i~~------------------------~~~~gt~~al~~a~~-----~l--~~~~~~lv~~~D 113 (308)
T 2qh5_A 69 EIKNE--IKNK--SVGFLLE------------------------SLSKNTANAIALSAL-----MS--DKEDLLIVTPSD 113 (308)
T ss_dssp HTTTT--CSSC--EEEEEEE------------------------SSCCCHHHHHHHHHH-----TS--CTTSEEEEEESS
T ss_pred HHHHh--hCCC--ccEEEeC------------------------CCCCChHHHHHHHHH-----Hh--CCCCeEEEEcCC
Confidence 88753 4542 1221111 124566666544322 11 123478889999
Q ss_pred Ccccccc-chHHhHH---HhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCC
Q 009878 194 NGLLFKA-IPASLGV---SATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 269 (523)
Q Consensus 194 N~L~~~~-dp~~lG~---~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 269 (523)
.++.... .-.++.. +.+++.++++.+.+..+....|.+.. +.+|+. +++.|=|....++ +... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~--d~~~~V----~~~~Ekp~~~~~~-----~~~~-~ 181 (308)
T 2qh5_A 114 HLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIES--PNGLDV----KRFIEKPSLDKAI-----EFQK-S 181 (308)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEEC--SSSSBC----SEEEESCCHHHHH-----HHHH-H
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEE--CCCCEE----EEEEECCChHHHH-----HHhh-c
Confidence 8553221 2334544 45566667766666555555676532 224543 2333322211111 0000 0
Q ss_pred CCCCCccceeeEEEehhhhHHHHhh
Q 009878 270 GYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 270 g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
+ + +..|+...+|+-+.+.+.+.+
T Consensus 182 g-~-~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 182 G-G-FYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp C-C-EEEEEEEEEEEHHHHHHHHHH
T ss_pred C-C-eEEEeEEEEEEHHHHHHHHHH
Confidence 0 1 135999999998877666654
No 17
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=98.27 E-value=4.1e-05 Score=80.64 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=103.8
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+.+.||.++|+. |++++++.++.+.+.. --.++|.|... ++.+.+++++
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---g~pli~~~l~~l~~~~------------~~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPLA---GKPMVQHVIDAAMKLG------------AQHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHHHT------------CSCEEEEESSC-HHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCcccCeeC---CeeHHHHHHHHHHhCC------------CCcEEEEeCCC-HHHHHHHhcc
Confidence 689999999999999988999999996 9999999999987651 12455555544 6778877764
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCch-hhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
. + +.+ +. + ..+.|.++ ++.++.. + ..-+++++.+.|.++
T Consensus 72 ~---~-----~~~----------------v~--~------~~~~g~~~~i~~~~~~------~--~~~~~~lv~~~D~P~ 111 (459)
T 4fce_A 72 P---S-----LNW----------------VL--Q------AEQLGTGHAMQQAAPH------F--ADDEDILMLYGDVPL 111 (459)
T ss_dssp -----------CE----------------EE--C------SSCCCHHHHHHHHGGG------S--CTTSEEEEEETTCTT
T ss_pred C---C-----cEE----------------Ee--C------CCCCCcHHHHHHHHHh------c--CCCCcEEEEeCCccc
Confidence 2 1 111 11 0 11234443 3333321 1 134799999999977
Q ss_pred ccccch-HHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCc
Q 009878 197 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275 (523)
Q Consensus 197 ~~~~dp-~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~ 275 (523)
....+. .++..+. +.+...-+++.......|.+.. + +|+..- .+|-....+. .. .+ +.
T Consensus 112 i~~~~i~~l~~~~~--~~~~~~~~~~~~~~~~~g~v~~--~-~g~v~~-~~ek~~~~~~---------~~-----~~-~~ 170 (459)
T 4fce_A 112 ISVDTLQRLLAAKP--EGGIGLLTVKLDNPSGYGRIVR--E-NGDVVG-IVEHKDASDA---------QR-----EI-NE 170 (459)
T ss_dssp CCHHHHHHHHHHCC--TTSEEEEEEECSCCTTSCEEEE--E-TTEEEE-EECGGGCCTT---------GG-----GC-CE
T ss_pred CCHHHHHHHHHHHh--hCCEEEEEEecCCCCcccEEEe--C-CCcEEE-EEECCCCChH---------Hh-----hc-cE
Confidence 543322 2333332 2455555555433344565443 2 565321 1332211110 00 11 13
Q ss_pred cceeeEEEehhhhHHHHhh
Q 009878 276 GNINQLILELGPYMEELKK 294 (523)
Q Consensus 276 gNinnl~~~l~~~~~~l~~ 294 (523)
.|+...+|+-+.+.+.+..
T Consensus 171 ~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 171 INTGILVANGRDLKRWLSL 189 (459)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEEEEHHHHHHHHHH
Confidence 5899999998877777654
No 18
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=98.22 E-value=1.4e-05 Score=80.59 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=100.3
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||+. ||.++|+.. .|++++++.++.+.+. .+ .++|.|.....+.+.++|.
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig~-~g~pli~~~l~~~~~~-------------~~~~i~vv~~~~~~~~~~~~~~ 68 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIGP-GGDTIMDYSVYDAIRA-------------GFGRLVFVIRHSFEKEFREKIL 68 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCST-TSCCHHHHHHHHHHHH-------------TCCEEEEEECGGGHHHHHHHTH
T ss_pred ceEEEEECCCCcccCCC--CceEeEcCC-CCeeHHHHHHHHHHHC-------------CCCeEEEEcCchHHHHHHHHHH
Confidence 46789999999999986 899999931 2899999999998654 23 3555555444589999998
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
....++. +|.+..|+..- + ........ ....|-|.|+....... .+ . +.+.|.+-|+ +
T Consensus 69 ~~~~~~~---~i~~~~~~~~~-~-~~~~~~~~-------~~~~~~Gt~~al~~a~~--~i----~---~~~lV~~gD~-l 126 (303)
T 3pnn_A 69 TKYEGRI---PVELVFQELDR-L-PEGFSCPE-------GREKPWGTNHAVLMGRD--AI----R---EPFAVINADD-F 126 (303)
T ss_dssp HHHTTTS---CEEEEECCTTC-C-CTTCCCCT-------TCCSCCCHHHHHHTTTT--TC----C---SCEEEEESSC-B
T ss_pred HHhccCC---cEEEEeccccc-c-cccccccc-------cccccCCcHHHHHHHHH--hc----C---CCEEEEECCe-e
Confidence 6433443 46666666321 1 01111111 11246788776655432 12 1 2445667887 4
Q ss_pred ccc-cchHHhHHHhh---cCccceeeeccC-CcccccC----cEEEEecCCCceEEEEEecc
Q 009878 197 LFK-AIPASLGVSAT---KQYHVNSLAVPR-KAKEAIG----GITRLTHADGRSMVINVEYN 249 (523)
Q Consensus 197 ~~~-~dp~~lG~~~~---~~~~~~~~vv~r-~~~e~~G----~i~~~~~~~G~~~v~nvEYs 249 (523)
... ..-.++.++.+ .+.++++.+.+- .|-...| +++.+ +.+|+.. ..+|-.
T Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~-d~~g~v~-~i~Ekp 186 (303)
T 3pnn_A 127 YGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQV-DEKHLLT-GVVERT 186 (303)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEE-CTTSBEE-EEEEEE
T ss_pred cCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEee-CCCCcEE-EEEECC
Confidence 432 23346777765 567777666553 3423334 34444 4467542 225543
No 19
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=98.20 E-value=1.6e-05 Score=80.02 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=91.7
Q ss_pred eEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHH
Q 009878 39 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 39 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~ 114 (523)
+.+|+||||.||||+ ...||.++|+. |++++++.++.+... .+ .++|.|+.+..+.+.++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~Iivv~~~~~~~~i~~~ 67 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSVLMLA-------------GIRDILIISTPRDLPLYRDL 67 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEET---TEETTHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHHH
T ss_pred eEEEEECCCCCCccccccCCCCceecEEC---CeeHHHHHHHHHHHC-------------CCCeEEEEeccchHHHHHHH
Confidence 568999999999998 46899999996 999999999988653 23 34555666677888898
Q ss_pred HHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCC
Q 009878 115 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194 (523)
Q Consensus 115 l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN 194 (523)
+.+...+|++ +.+.. ...|.|.++.+.... +.+ . .-.++.+. .||
T Consensus 68 l~~g~~~g~~---i~~~~------------------------~~~~~G~~~al~~a~-----~~i-~-~~~~~lv~-gD~ 112 (295)
T 1lvw_A 68 LGDGSQFGVR---FSYRV------------------------QEEPRGIADAFIVGK-----DFI-G-DSKVALVL-GDN 112 (295)
T ss_dssp HTTSGGGTSE---EEEEE------------------------CSSCCCGGGHHHHTH-----HHH-T-TSCEEEEE-TTC
T ss_pred hhhccccCce---EEEee------------------------CCCCCChHHHHHHHH-----HHh-C-CCcEEEEE-CCc
Confidence 8765445542 22111 112567776554431 222 1 23455555 899
Q ss_pred ccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCce
Q 009878 195 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRS 241 (523)
Q Consensus 195 ~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~ 241 (523)
++.......++..+.+.+.+..+-+++-...++.|++.. +.+|+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~v 157 (295)
T 1lvw_A 113 VFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEF--DSEGRV 157 (295)
T ss_dssp CEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEE--CTTSBE
T ss_pred cccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEE--CCCCcE
Confidence 875433345666665555555444444322235665442 345653
No 20
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=98.18 E-value=1.2e-05 Score=79.84 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=112.6
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+ .|.++|+. ||+++++.++++.+.. --.++|.|. ++.+.+++++
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i~---GkPmi~~~l~~l~~~~------------i~~IvV~t~---~~~i~~~~~~ 76 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDIN---GKPMIVHVLERARESG------------AERIIVATD---HEDVARAVEA 76 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT------------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCC---CcceeeEC---CeEHHHHHHHHHHhCC------------CCEEEEECC---HHHHHHHHHH
Confidence 6899999999999994 59999996 9999999999987541 113455552 5788888875
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
||.+ + ++ . ....|.|.|.+..++. .+...+.+++++.+.|++|.
T Consensus 77 ---~g~~---v------------------~~--~----~~~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli 120 (264)
T 3k8d_A 77 ---AGGE---V------------------CM--T----RADHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMI 120 (264)
T ss_dssp ---TTCE---E------------------EE--C----CTTCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTC
T ss_pred ---cCCE---E------------------EE--e----cCCCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccC
Confidence 3431 1 11 0 1124567777665542 22223568999999999886
Q ss_pred cccc-hHHhHHHhhcCccceeeecc-CCccccc--CcEEEEecCCCceEEEEEeccCCCH-HHHhcC-CCCCCCccCCCC
Q 009878 198 FKAI-PASLGVSATKQYHVNSLAVP-RKAKEAI--GGITRLTHADGRSMVINVEYNQLDP-LLRATG-FPDGDVNCETGY 271 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~~~~~~~~vv~-r~~~e~~--G~i~~~~~~~G~~~v~nvEYsel~~-~~~~~~-~~~g~~~~~~g~ 271 (523)
...+ -.++..+.+.++++++.+++ +.+.+.. +.+-.+.+.+|+. +.+++=+. ..+... ..... +..
T Consensus 121 ~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~----l~fsr~~ip~~r~~~~~~~~~----~~~ 192 (264)
T 3k8d_A 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYA----LYFSRATIPWDRDRFAEGLET----VGD 192 (264)
T ss_dssp CHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBE----EEEESSCCSCCHHHHHHCSSC----CCS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeE----EEEecCCCCCCCccccccccc----cCC
Confidence 5332 23556666678888888887 3333211 1211222567764 44444211 111000 00000 011
Q ss_pred CCCccceeeEEEehhhhHHHHh
Q 009878 272 SPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 272 ~~f~gNinnl~~~l~~~~~~l~ 293 (523)
+ |-.|+....|+-+++.+...
T Consensus 193 ~-~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 193 N-FLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp C-CEEECSEEEEEHHHHHHHHH
T ss_pred c-ceEEEEEEEECHHHHHHHHh
Confidence 1 23699999999987776654
No 21
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=98.15 E-value=8.4e-06 Score=82.23 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=105.4
Q ss_pred eEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHH
Q 009878 39 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 39 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~ 114 (523)
+.+|+||||.||||+ ...||.++|+. |++++++.++.+... .+ .++|.|+.+..+.+.++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~I~vv~~~~~~~~i~~~ 67 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIY---DKPMIYYPLSVLMLA-------------GIREILIITTPEDKGYFQRL 67 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEET---TEETTHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEEC---CeeHHHHHHHHHHhC-------------CCCcEEEEechhHHHHHHHH
Confidence 568999999999998 57899999996 999999999988643 23 34555666677888899
Q ss_pred HHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCC
Q 009878 115 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 194 (523)
Q Consensus 115 l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN 194 (523)
+.+...||++ +.+..| ..|.|.++.+... ++.+ . .-.++.+. .||
T Consensus 68 l~~g~~~g~~---i~~~~~------------------------~~~~G~~~al~~a-----~~~i-~-~~~~~lv~-gD~ 112 (296)
T 1mc3_A 68 LGDGSEFGIQ---LEYAEQ------------------------PSPDGLAQAFIIG-----ETFL-N-GEPSCLVL-GDN 112 (296)
T ss_dssp HTTSGGGTCE---EEEEEC------------------------SSCCCSTHHHHHT-----HHHH-T-TSCEEEEE-TTE
T ss_pred HhcccccCce---EEEecc------------------------CCCCCHHHHHHHH-----HHHh-C-CCCEEEEE-CCc
Confidence 8765445542 221111 1356776655432 1222 1 23355554 899
Q ss_pred ccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCC
Q 009878 195 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 274 (523)
Q Consensus 195 ~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f 274 (523)
++.......++..+.+++.+..+-+++-...++.|++.. +.+|+ + +.+.|=|. .+ -+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~--d~~g~--v--~~~~ekp~------~~---------~s~- 170 (296)
T 1mc3_A 113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEF--DDNFR--A--ISLEEKPK------QP---------KSN- 170 (296)
T ss_dssp EEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEE--ETTEE--E--EECCBSCS------SC---------SCS-
T ss_pred cccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEE--CCCCc--E--EEEEECCC------CC---------CCC-
Confidence 775444455666665555555544444332346776543 33454 2 33332110 01 011
Q ss_pred ccceeeEEEehhhh
Q 009878 275 PGNINQLILELGPY 288 (523)
Q Consensus 275 ~gNinnl~~~l~~~ 288 (523)
..|+...+|+-+.+
T Consensus 171 ~~~~Giy~~~~~~l 184 (296)
T 1mc3_A 171 WAVTGLYFYDSKVV 184 (296)
T ss_dssp EEEEEEEECCTHHH
T ss_pred EEEEEEEEEcHHHH
Confidence 25888888888754
No 22
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=98.14 E-value=1.6e-05 Score=78.63 Aligned_cols=187 Identities=15% Similarity=0.105 Sum_probs=105.7
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+ ||.++|+. ||+++++.++++++. +. -.++|-|. ++.+.+++++
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i~---GkPli~~~l~~l~~~----~i--------~~VvVvt~---~~~i~~~~~~ 67 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDIA---GKPMIQHVYESAIKS----GA--------EEVVIATD---DKRIRQVAED 67 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEET---TEEHHHHHHHHHHHT----TC--------SEEEEEES---CHHHHHHHHH
T ss_pred CceEEEEcCCCCCCCC---CCCeeeEC---CchHHHHHHHHHHhC----CC--------CEEEEECC---HHHHHHHHHH
Confidence 6889999999999996 89999996 999999999998753 11 12345553 5888888875
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
||.+ + ++ . ....|.|.+.++.++.. +...+.+++.+.+.|++|.
T Consensus 68 ---~g~~---v------------------~~--~----~~~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli 111 (256)
T 3tqd_A 68 ---FGAV---V------------------CM--T----SSDHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI 111 (256)
T ss_dssp ---TTCE---E------------------EE--C----CTTCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC
T ss_pred ---cCCe---E------------------EE--e----CCCCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC
Confidence 4431 1 11 0 11245677766665532 2113568999999999886
Q ss_pred cccc-hHHhHHHhhc-Cccceeeecc-CCccc-----ccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCc---
Q 009878 198 FKAI-PASLGVSATK-QYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVN--- 266 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~-~~~~~~~vv~-r~~~e-----~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~--- 266 (523)
...+ -.++..+.++ ++++++.+++ +.+.+ .++++ .+.+|+. +.+++=+.-. .+ ++...
T Consensus 112 ~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv---~d~~g~~----l~fsr~pip~--~r--~~~~~~~~ 180 (256)
T 3tqd_A 112 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVV---LNRRNYA----LYFSHAPIPW--GR--DTFSDKEN 180 (256)
T ss_dssp CHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEE---ECTTSBE----EEEESSCSSC--CT--TTTTCGGG
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEE---ECCCCEE----eEEecCCCCC--CC--cccccccc
Confidence 4322 2345555543 5677777776 22221 23332 2557764 3344321100 00 00000
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHh
Q 009878 267 CETGYSPFPGNINQLILELGPYMEELK 293 (523)
Q Consensus 267 ~~~g~~~f~gNinnl~~~l~~~~~~l~ 293 (523)
.....++ -.|+....|+-+++++..+
T Consensus 181 ~~~~~~~-~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 181 LQLNGSH-YRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp CCCSSCC-EEEEEEEEEEHHHHHHHHH
T ss_pred cccCCcc-eEEEEEEEcCHHHHHHHHh
Confidence 0001222 3699999999987766553
No 23
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=98.11 E-value=2e-05 Score=78.04 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=51.8
Q ss_pred eEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 39 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
+.+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+.-++....+..+.+.++|
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------gi~~i~vv~~~~~~~i~~~~ 66 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEA-------------GCEVMAIVTGRNKRSLEDYF 66 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSS---SSBHHHHHHHHHHHH-------------TCCEEEEEECTTHHHHHHHT
T ss_pred eEEEEECCcCCcccCccccCCCcccceEC---CEEHHHHHHHHHHhC-------------CCCEEEEEecCCHHHHHHHH
Confidence 4689999999999986 8899999996 999999999998765 34444444456778899998
Q ss_pred HhC
Q 009878 116 ESN 118 (523)
Q Consensus 116 ~~~ 118 (523)
.+.
T Consensus 67 ~~~ 69 (281)
T 3juk_A 67 DTS 69 (281)
T ss_dssp SCC
T ss_pred hcc
Confidence 754
No 24
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=98.05 E-value=4.2e-05 Score=80.55 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=103.1
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||+.+.||.++|+. |++++++.++++... .+ .++|.|.. ..+.+.+++.
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------~~~~iivv~~~-~~~~i~~~~~ 67 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVLHTIA---GKPMVKHVIDTAHQL-------------GSENIHLIYGH-GGDLMRTHLA 67 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGGSEET---TEEHHHHHHHHHHHT-------------TCSCEEEEECT-THHHHHHHTT
T ss_pred cceEEEECCCCCcccCCCCCccccEEC---CccHHHHHHHHHHhC-------------CCCcEEEEeCC-CHHHHHHHhh
Confidence 578899999999999987899999996 999999999998764 22 34555554 4567777765
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
++ + +.+. . ++ .+.|.++...... +.+. .-+++++.+.|.++
T Consensus 68 ~~---~-----~~~v----------------~--~~------~~~g~~~~~~~~~-----~~~~--~~~~vlv~~~D~P~ 108 (456)
T 2v0h_A 68 NE---Q-----VNWV----------------L--QT------EQLGTAHAVQQAA-----PFFK--DNENIVVLYGDAPL 108 (456)
T ss_dssp TC---C-----CEEE----------------E--CS------CCCCHHHHHHHHG-----GGCC--TTSEEEEEETTCTT
T ss_pred cC---C-----cEEE----------------e--CC------CCCCcHHHHHHHH-----HhcC--CCCeEEEEcCCcce
Confidence 42 1 2221 1 10 1334443333221 1111 14689999999987
Q ss_pred ccccch-HHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCc
Q 009878 197 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 275 (523)
Q Consensus 197 ~~~~dp-~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~ 275 (523)
....+. .++..+.+ .++.+.+++.......|.+.. + +|+..- .+|..+..+... . .+.
T Consensus 109 i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~--~-~g~v~~-~~ek~~~~~~~~--------------~-~~~ 167 (456)
T 2v0h_A 109 ITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIR--E-NGNVVA-IVEQKDANAEQL--------------N-IKE 167 (456)
T ss_dssp CCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEE--E-TTEEEE-EECTTTCCHHHH--------------T-CCE
T ss_pred eCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEE--c-CCcEEE-EEECCCCChhHh--------------c-CcE
Confidence 643332 23443333 455554444322233454433 2 565321 144433322211 0 123
Q ss_pred cceeeEEEehhhhHHHHhh
Q 009878 276 GNINQLILELGPYMEELKK 294 (523)
Q Consensus 276 gNinnl~~~l~~~~~~l~~ 294 (523)
.|+....|+.+.+.+.++.
T Consensus 168 ~~~Giy~~~~~~l~~~l~~ 186 (456)
T 2v0h_A 168 VNTGVMVSDGASFKKWLAR 186 (456)
T ss_dssp EEEEEEEEEHHHHHHHHTT
T ss_pred EEEEEEEEEHHHHHHHHHH
Confidence 5888889998877666643
No 25
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=98.01 E-value=4.4e-05 Score=73.00 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=77.3
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||| ||.++|+. |++++++.++++.+.. .+ .++|.|. ++.+.++++
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i~---gkpll~~~l~~~~~~~------------~~~~ivvv~~---~~~i~~~~~ 62 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKMN---GISLLGHTINAAISSK------------CFDRIIVSTD---GGLIAEEAK 62 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEET---TEEHHHHHHHHHHHHC------------CCSEEEEEES---CHHHHHHHH
T ss_pred ceEEEEecCCCCCCCC---CcccceeC---CcCHHHHHHHHHHhCC------------CCCEEEEECC---CHHHHHHHH
Confidence 5778999999999998 99999996 9999999999987651 12 3455553 466777776
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCC-chhhHHHhhcChhHHHHHCCceEEEEEeCCCc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGH-GDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 195 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~Gh-Gdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~ 195 (523)
++ |. ++ +.+ +..+.....|. ..++.++ +.+ ..+.+++++.+.|++
T Consensus 63 ~~---~~---~~--~~~-------------------~~~~~~~~~g~~~sv~~~l------~~~-~~~~d~vlv~~~D~P 108 (228)
T 1ezi_A 63 NF---GV---EV--VLR-------------------PAELASDTASSISGVIHAL------ETI-GSNSGTVTLLQPTSP 108 (228)
T ss_dssp HT---TC---EE--EEC-------------------CC------CHHHHHHHHHH------HHH-TCCSEEEEECCTTCT
T ss_pred Hc---CC---EE--EeC-------------------chHHcCCCCChHHHHHHHH------HHh-CCCCCEEEEEcCCCC
Confidence 53 32 11 111 00011111111 1233333 223 234689999999998
Q ss_pred cccccc-hHHhHHHhhcCccceeeeccC
Q 009878 196 LLFKAI-PASLGVSATKQYHVNSLAVPR 222 (523)
Q Consensus 196 L~~~~d-p~~lG~~~~~~~~~~~~vv~r 222 (523)
+....+ -.++..+..+++++..-+++.
T Consensus 109 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 136 (228)
T 1ezi_A 109 LRTGAHIREAFSLFDEKIKGSVVSACPM 136 (228)
T ss_dssp TCCHHHHHHHHTTCCTTTCCCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 754322 223444444566777666664
No 26
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=98.00 E-value=7.5e-05 Score=79.02 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=106.0
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHHhC
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLESN 118 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~~~ 118 (523)
.+|+||||.||||+.+.||.++|+. |++++++.++++.+. .+ .++|.|. +..+.+.+++++
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------g~~~iivv~~-~~~~~i~~~~~~- 74 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVLHKVA---GISMLEHVFRSVGAI-------------QPEKTVTVVG-HKAELVEEVLAG- 74 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHTT-------------CCSEEEEEEC-TTHHHHHHSSSS-
T ss_pred cEEEEcCCCCccCCCCCCcEeeEEC---CccHHHHHHHHHHhc-------------CCCCEEEEEC-CCHHHHHHHhCC-
Confidence 4689999999999988899999996 999999999988653 23 3445454 345555555432
Q ss_pred CCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcccc
Q 009878 119 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 198 (523)
Q Consensus 119 ~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~~ 198 (523)
.+.+ + . +. .+.|.++..... ++.+ ...-+++++.+.|.+|..
T Consensus 75 --------~i~~--------v--------~--~~------~~~G~~~sl~~a-----~~~~-~~~~~~vlv~~~D~P~i~ 116 (468)
T 1hm9_A 75 --------QTEF--------V--------T--QS------EQLGTGHAVMMT-----EPIL-EGLSGHTLVIAGDTPLIT 116 (468)
T ss_dssp --------SSEE--------E--------E--CS------SCCCHHHHHHTT-----HHHH-TTCCSEEEEEETTCTTCC
T ss_pred --------CcEE--------E--------e--CC------ccCChHHHHHHH-----HHHh-ccCCCeEEEEeCCccccC
Confidence 1111 1 1 10 134555443322 2333 222478999999998654
Q ss_pred ccc-hHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCCCCCCccc
Q 009878 199 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 277 (523)
Q Consensus 199 ~~d-p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g~~~f~gN 277 (523)
..+ -.++-.+.++++++++.+.+.......|.+.. +.+|+. +++.|=+.. .+ ... ..+..|
T Consensus 117 ~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~-----~~-~~~------~~~~~~ 178 (468)
T 1hm9_A 117 GESLKNLIDFHINHKNVATILTAETDNPFGYGRIVR--NDNAEV----LRIVEQKDA-----TD-FEK------QIKEIN 178 (468)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCE----EEEECTTTC-----CT-TGG------GCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEE--CCCCCE----EEEEECCCC-----Ch-HHh------cCeEEE
Confidence 332 34566666777887776666543344665443 345643 333221110 00 000 012358
Q ss_pred eeeEEEehhhhHHHHhh
Q 009878 278 INQLILELGPYMEELKK 294 (523)
Q Consensus 278 innl~~~l~~~~~~l~~ 294 (523)
+...+|+-+.+.+.+.+
T Consensus 179 ~Giy~f~~~~l~~~l~~ 195 (468)
T 1hm9_A 179 TGTYVFDNERLFEALKN 195 (468)
T ss_dssp EEEEEEEHHHHHHHHTT
T ss_pred EEEEEEEHHHHHHHHHh
Confidence 88999998877666643
No 27
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=97.98 E-value=5.8e-05 Score=72.15 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=73.6
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+ ||.++|+. |++++++.++++.+. . -.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i~---g~pli~~~l~~~~~~---~----------~~i~v~~~~---~~i~~~~~~ 59 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNLL---GKPLIRWVVEGLVKT---G----------ERVILATDS---ERVKEVVED 59 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEET---TEEHHHHHHHHHHTT---T----------SCEEEEESC---HHHHHHHTT
T ss_pred ceEEEEEcCCCCCCCC---CCcceeEC---CEEHHHHHHHHHHHh---C----------CEEEEECCh---HHHHHHHHh
Confidence 4678999999999998 99999996 999999999988653 1 134565543 677777753
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
+ . ++ + . . + ...+.|.|+++.++.. -+.+++++.+.|.++.
T Consensus 60 ~----~---~~----------~--------~--~-~---~~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~ 99 (234)
T 2y6p_A 60 L----C---EV----------F--------L--T-P---SDLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFV 99 (234)
T ss_dssp T----S---EE----------E--------E--C-C---TTCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCC
T ss_pred c----e---EE----------E--------E--C-C---cccccchHHHHHHHHh---------CCCCEEEEecCCcCcC
Confidence 1 1 11 1 1 0 0 1134566666654422 1457899999999876
Q ss_pred cccc-hHHhHHHhhcC
Q 009878 198 FKAI-PASLGVSATKQ 212 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~~ 212 (523)
...+ -.++..+.+.+
T Consensus 100 ~~~~i~~l~~~~~~~~ 115 (234)
T 2y6p_A 100 YEEDIKLIFRELEKGE 115 (234)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhCC
Confidence 5322 34555555555
No 28
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=97.96 E-value=3.3e-05 Score=74.51 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=80.8
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCc-ccEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQE-IPFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~-iPl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||+ ||.++|+. |+|++++.++.+.+.. . -.++|.|.. +.+.++++
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i~---g~pli~~~i~~~~~~~------------~~~~ivvv~~~---~~i~~~~~ 60 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDIV---GKPMIQHVYERALQVA------------GVAEVWVATDD---PRVEQAVQ 60 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHTCT------------TCCEEEEEESC---HHHHHHHH
T ss_pred CeEEEEEcCCcCCCCC---CCcccccC---CchHHHHHHHHHHhCC------------CCCeEEEECCc---HHHHHHHH
Confidence 4678999999999996 99999995 9999999999886541 1 245566643 77888887
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
++ |. .+ +.. + ...+.|.++++.++.. + +-+++++.+.|.++
T Consensus 61 ~~---~~-----~~--------~~~-----------~---~~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~ 101 (245)
T 1h7e_A 61 AF---GG-----KA--------IMT-----------R---NDHESGTDRLVEVMHK------V---EADIYINLQGDEPM 101 (245)
T ss_dssp HT---TC-----EE--------EEC-----------C---SCCSSHHHHHHHHHHH------S---CCSEEEECCTTCTT
T ss_pred Hc---CC-----eE--------EeC-----------C---CccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCc
Confidence 53 32 11 110 0 1123455666655532 1 45789999999987
Q ss_pred ccccc-hHHhHHHhhc-CccceeeeccC
Q 009878 197 LFKAI-PASLGVSATK-QYHVNSLAVPR 222 (523)
Q Consensus 197 ~~~~d-p~~lG~~~~~-~~~~~~~vv~r 222 (523)
....+ -.++..+..+ ++++.+-+++.
T Consensus 102 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 129 (245)
T 1h7e_A 102 IRPRDVETLLQGMRDDPALPVATLCHAI 129 (245)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeecC
Confidence 54322 2345555555 67766655554
No 29
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=97.84 E-value=0.00012 Score=71.29 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCccCCc-CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~-~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l 115 (523)
++.+|+||||.|||||. +.||.++|+. |+|++++.++.+.+.. .+ .++|.++....+.+.+.+
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l~---Gkpll~~~l~~~~~~~------------~~~~ivvv~~~~~~~~~~~~~ 67 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPLN---GKPIIVHTVEKFILNT------------RFDKILISSPKEWMNHAEDNI 67 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEET---TEEHHHHHHHHHHTCT------------TCSEEEEEECGGGHHHHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeEEEEC---CeeHHHHHHHHHHcCC------------CCCEEEEEeCHHHHHHHHHHH
Confidence 57899999999999998 7899999995 9999999999886431 13 355666655444566777
Q ss_pred HhC
Q 009878 116 ESN 118 (523)
Q Consensus 116 ~~~ 118 (523)
+++
T Consensus 68 ~~~ 70 (246)
T 3f1c_A 68 KKY 70 (246)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 30
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=97.83 E-value=0.00014 Score=74.58 Aligned_cols=194 Identities=18% Similarity=0.131 Sum_probs=105.7
Q ss_pred eEEEEecCCCCccCC----cCCCcccccccCCCC-cchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 39 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 39 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g-ksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
+.+|+||||.||||+ ...||.++|+. | +|++|+.++++..+. + .-.++|.|.....+.+.+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---g~~pli~~~l~~l~~~~---~--------~~~iivvt~~~~~~~i~~ 67 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLF---GNKSLMRWTFERVLEEM---D--------PKDVIVVTHKDYVERTKK 67 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCB---TTBCHHHHHHHHHHTTC---C--------GGGEEEEEEGGGHHHHHH
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECC---CCCcHHHHHHHHHhccC---C--------CCcEEEEcChHHHHHHHH
Confidence 457899999999998 45899999996 6 999999999886531 1 123566665544456666
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
++.+.. ..+ ++. + + .|-|.|........ .+ ..-+++++.+.|
T Consensus 68 ~l~~~~-----~~~------------------ii~--e-~-----~~~gta~ai~~a~~-----~~--~~~~~~lvl~~D 109 (336)
T 2x65_A 68 ELPELP-----DEN------------------IIA--E-P-----MKKNTAPACFIGTK-----LA--DDDEPVLVLPAD 109 (336)
T ss_dssp HCTTSC-----GGG------------------EEE--E-S-----SCCCHHHHHHHHHT-----TS--CTTCEEEEEETT
T ss_pred Hhhccc-----cce------------------EEe--C-C-----CCCCcHHHHHHHHH-----hh--CCCCEEEEEcCC
Confidence 665321 011 122 1 1 23455554443221 11 224688899999
Q ss_pred Cccccccc-----hHHhHHHhhcCccceeeeccCCcccccCcEEEEec-CCCceEEEEEeccCCCHHHHhcCCCCCCCcc
Q 009878 194 NGLLFKAI-----PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATGFPDGDVNC 267 (523)
Q Consensus 194 N~L~~~~d-----p~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~-~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~ 267 (523)
.++....+ -.++-++.+++..+++-+.+..|....|.+..-.. .++-.++ ..+.|=|....++. .+.
T Consensus 110 ~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V--~~f~EKp~~~~a~~----~~~- 182 (336)
T 2x65_A 110 HRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKV--AQFREKPDLETAKK----FVE- 182 (336)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEE--EEEEESCCHHHHHH----HHH-
T ss_pred ceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEE--EEEEECCChHHHHH----HHh-
Confidence 86543211 11233344546666666666666666776643100 0111222 33333232211110 000
Q ss_pred CCCCCCCccceeeEEEehhhhHHHHhh
Q 009878 268 ETGYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 268 ~~g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
.| .|.-|+..+.|+.+.+.+.+++
T Consensus 183 -~g--~y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 183 -SG--RFLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp -HT--CEEEEEEEEEEEHHHHHHHHHH
T ss_pred -cC--CeEEEeeeEEEEHHHHHHHHHH
Confidence 11 1124999999999987666654
No 31
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=97.79 E-value=0.00017 Score=69.27 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=78.7
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||+ +|.++|+. |++++++.++++++.. .+ .+++-| .++.+.++++
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i~---Gkpli~~~i~~~~~~~------------~~~~ivv~~---~~~~i~~~~~ 61 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRLA---GVPLIGWVLRAALDAG------------VFQSVWVST---DHDEIENVAK 61 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEET---TEEHHHHHHHHHHHHT------------CCSEEEEEE---SCHHHHHHHH
T ss_pred cEEEEEEcCCCCCCCC---CcccceEC---CEEHHHHHHHHHHhCC------------CcCEEEEEC---ChHHHHHHHH
Confidence 5788999999999995 59999995 9999999999987651 12 344545 3577888887
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
++ |. .++.++ .......+.|.+.+..+|.. + .+.+++++.+.|++|
T Consensus 62 ~~---g~-----~~~~~~------------------~~~~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pl 107 (229)
T 1qwj_A 62 QF---GA-----QVHRRS------------------SETSKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPC 107 (229)
T ss_dssp HT---TC-----EEEECC------------------GGGSSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTT
T ss_pred Hc---CC-----EEEeCh------------------hhhcCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCc
Confidence 53 32 112110 00001122233334444422 1 246789999999988
Q ss_pred ccccc-hHHhHHHhhcCccceeeec
Q 009878 197 LFKAI-PASLGVSATKQYHVNSLAV 220 (523)
Q Consensus 197 ~~~~d-p~~lG~~~~~~~~~~~~vv 220 (523)
....+ -.++..+...+++..+-++
T Consensus 108 i~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 108 LHPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp CCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 65322 2345555566666555544
No 32
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=97.79 E-value=8.3e-05 Score=70.91 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=40.8
Q ss_pred eEEEEecCCCCccCCc-CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 39 AAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 39 vavvlLaGGlGTRLG~-~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
+.+|+||||.|||||. +.||.++|+. |++++++.++++.+.. + --.++|.|.....+.+.+++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~---g~pli~~~l~~l~~~~--------~---~~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELG---DRPILIHTIEKFVLEP--------S---IEKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGGSEET---TEEHHHHHHHHHHTCT--------T---CCCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeC---CccHHHHHHHHHHcCC--------C---CCeEEEEeCHHHHHHHHHHHHh
Confidence 5689999999999985 6799999996 9999999998886431 0 1245666665554778888865
No 33
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=97.74 E-value=0.0001 Score=72.28 Aligned_cols=128 Identities=17% Similarity=0.130 Sum_probs=80.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
++.+|+||||.||||+ +|.++|+. |++++++.++.+.+.. .-.+++.|. ++.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~~---gkpli~~~l~~l~~~~------------~~~ivvv~~---~~~i~~~~~~ 60 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADIK---GKPMIQHVFEKALQSG------------ASRVIIATD---NENVADVAKS 60 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT------------CSEEEEEES---CHHHHHHHHH
T ss_pred CcEEEEEcCCCCCCCC---CCccccCC---CeEHHHHHHHHHHhCC------------CceEEEECC---cHHHHHHHHh
Confidence 4678999999999996 59999995 9999999999887641 123455554 2567788765
Q ss_pred CCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCccc
Q 009878 118 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 197 (523)
Q Consensus 118 ~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L~ 197 (523)
. |. .+ + . . + ...+.|.|.+..+ ++.+...+-+++++.+.|.++.
T Consensus 61 ~---~~-----~~--------~--------~--~-~---~~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i 104 (262)
T 1vic_A 61 F---GA-----EV--------C--------M--T-S---VNHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLI 104 (262)
T ss_dssp T---TC-----EE--------E--------E--C-C---CSSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTC
T ss_pred c---CC-----EE--------E--------E--C-C---ccccCChHHHHHH------HHHhccCCCCEEEEEeCCcCcc
Confidence 2 32 11 1 1 0 0 1123444433222 2222223457899999999876
Q ss_pred cccc-hHHhHHHhhcCccceeeeccC
Q 009878 198 FKAI-PASLGVSATKQYHVNSLAVPR 222 (523)
Q Consensus 198 ~~~d-p~~lG~~~~~~~~~~~~vv~r 222 (523)
...+ -.++..+.+.++++.+-+++.
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 105 PPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 5332 245566666677777666664
No 34
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=97.74 E-value=3e-05 Score=75.35 Aligned_cols=189 Identities=15% Similarity=0.098 Sum_probs=102.4
Q ss_pred eEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHH
Q 009878 39 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQEL 114 (523)
Q Consensus 39 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~ 114 (523)
+.+|+||||.||||+. +.||.++|+. |++++++.++.+.+. .+ .++|.|+ +.++.+.++
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~---gkpli~~~l~~l~~~-------------g~~~i~vv~~-~~~~~i~~~ 65 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIG---GKPILWHIMKMYSVH-------------GIKDFIICCG-YKGYVIKEY 65 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEEC-TTHHHHHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcc-cCHHHHHHH
Confidence 5678999999999985 6799999996 999999999988764 23 3455555 456889999
Q ss_pred HHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCcc----ccccCCCchhhHHHhhcChhHHHHHCCceEEEEE
Q 009878 115 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 190 (523)
Q Consensus 115 l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i----~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~ 190 (523)
+.++..++ .++.+..|+.--.+.. . ...++.+ .-.+.|.|+....... .+. +-+++.+.
T Consensus 66 ~~~~~~~~---~~~~~~~~~~~~~~~~--~-----~~~~~~v~~~~~~~~~gt~~al~~a~~-----~~~--~~~~~lv~ 128 (259)
T 1tzf_A 66 FANYFLHM---SDVTFHMAENRMEVHH--K-----RVEPWNVTLVDTGDSSMTGGRLKRVAE-----YVK--DDEAFLFT 128 (259)
T ss_dssp HHTHHHHH---SCEEEEGGGTEEEETT--C-----CCCCCEEEEEECCSSCCHHHHHHHTGG-----GTT--TSSCEEEE
T ss_pred Hhhccccc---ccccccccccceeeee--c-----cccccceeeeecccccCcHHHHHHHHH-----hcC--CCCcEEEE
Confidence 97642110 1233333322000100 0 0011111 1235677776654422 121 23677788
Q ss_pred eCCCccccccchHHhHHHhhcCccceeeeccCCcccccCcEEEEecCCCceEEEEEeccCCCHHHHhcCCCCCCCccCCC
Q 009878 191 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 270 (523)
Q Consensus 191 ~vDN~L~~~~dp~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~G~~~v~nvEYsel~~~~~~~~~~~g~~~~~~g 270 (523)
+.|+ +.....-.++..+..++.++++..+. +....|.+.. + +|+. +++.|-|. . .
T Consensus 129 ~~D~-~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~g~v~~--~-~g~v----~~~~ekp~-------~--~------ 183 (259)
T 1tzf_A 129 YGDG-VADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDI--Q-AGQV----RSFQEKPK-------G--D------ 183 (259)
T ss_dssp ETTE-EECCCHHHHHHHHHHHCCSEEEEEEC--CCCCSEEEEE--E-TTEE----EEEEESCS-------C--C------
T ss_pred ECCE-ecccCHHHHHHHHHHhCCeEEEEEec--CCCCccEEEE--c-CCEE----EEEEecCC-------C--C------
Confidence 8898 44433345677777777766553332 3344565443 2 5643 33433110 0 0
Q ss_pred CCCCccceeeEEEehhhh
Q 009878 271 YSPFPGNINQLILELGPY 288 (523)
Q Consensus 271 ~~~f~gNinnl~~~l~~~ 288 (523)
.+..|+...+|+-+.+
T Consensus 184 --~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 184 --GAMINGGFFVLNPSVI 199 (259)
T ss_dssp --SCCEECCCEEECGGGG
T ss_pred --CceEEEEEEEeCHHHH
Confidence 1135888888888754
No 35
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=97.72 E-value=3e-05 Score=71.98 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=46.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||| .||.++|+. |++++++.++.+... .+ .++|.|.. ..+.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pll~~~l~~l~~~-------------~~~~i~vv~~~-~~~~~~~~~~ 65 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPYR---DTTVLGATLDVARQA-------------GFDQLILTLGG-AASAVRAAMA 65 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEET---TEEHHHHHHHHHHHT-------------TCSEEEEEECT-THHHHHHHSC
T ss_pred ceEEEEECCCCcccCC--CCeEcCeeC---CccHHHHHHHHHHhc-------------CCCcEEEEeCC-CHHHHHHHhc
Confidence 5788999999999997 799999995 999999999988764 22 34555544 3556666554
No 36
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=97.68 E-value=3e-05 Score=71.94 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=45.8
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++.+|+||||.||||| .||.++|+. |++++++.++.+... .+ .++|.|+. .++.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pli~~~l~~l~~~-------------~~~~i~vv~~~-~~~~~~~~~~ 65 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPLG---DTTLLGATLAMARRC-------------PFDQLIVTLGG-AADEVLEKVE 65 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEET---TEEHHHHHHHHHHTS-------------SCSEEEEEECT-THHHHHHHSC
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEeC---ccCHHHHHHHHHHhC-------------CCCcEEEEeCC-CHHHHHHHhc
Confidence 5788999999999998 799999995 999999999888653 22 45555543 4456666654
No 37
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=97.65 E-value=6.1e-05 Score=71.31 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=37.7
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.|||||...||.++|+. |+|++++.++++.+.
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~~---g~pli~~~l~~l~~~ 43 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTLG---GTPLLEHALSGLRAS 43 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEET---TEEHHHHHHHHHHHH
T ss_pred ceEEEEECCccCcccCCCCCCeeeEEC---CeEHHHHHHHHHhcC
Confidence 467899999999999977899999995 999999999998765
No 38
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=97.59 E-value=3.6e-05 Score=73.42 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=28.4
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++.+.
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~l~~~~---gkpli~~~l~~l~~~ 47 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQYVEIG---SKTVLEHVLGIFERH 47 (231)
T ss_dssp CEEEEEECC----------CCSCCEET---TEEHHHHHHHHHHTC
T ss_pred ceEEEEEcccccccCCCCCCceEeEEC---CeEHHHHHHHHHHcC
Confidence 678999999999999977799999995 999999999988643
No 39
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=97.56 E-value=4.9e-05 Score=72.45 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=31.4
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++.+.
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i~---g~pli~~~l~~l~~~ 45 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSRM 45 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEET---TEEHHHHHHHHHHHC
T ss_pred ceEEEEECCccccccCCCCCccEeEEC---CEEHHHHHHHHHHcC
Confidence 578899999999999977899999995 999999999988653
No 40
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=97.54 E-value=0.00035 Score=68.86 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=101.7
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHH-HHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYI-ECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~-~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
..+|+||||.||||+ +|.++|+. |++++++.+ +++++. .+ .+++-|. ++.+.++++
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i~---GkPli~~~i~~~~~~~-------------~~~~vvVvt~---~~~i~~~~~ 59 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLIH---DRPMILRVVDQAKKVE-------------GFDDLCVATD---DERIAEICR 59 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEET---TEEHHHHHHHHHHTCT-------------TCCEEEEEES---CHHHHHHHH
T ss_pred eEEEEEeCCCCCCCC---CCceeeEC---CeEhHHHHHHHHHHhc-------------CCCEEEEECC---HHHHHHHHH
Confidence 468999999999996 59999995 999999999 877542 12 3455553 578888886
Q ss_pred hCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCCCcc
Q 009878 117 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 196 (523)
Q Consensus 117 ~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vDN~L 196 (523)
+ ||.+ + ++ .. ...+.|.+-+..++ +.+...+.+++.+.+-|++|
T Consensus 60 ~---~g~~---v------------------~~--~~----~~~~~Gt~~i~~a~------~~~~~~~~d~vlv~~gD~Pl 103 (253)
T 4fcu_A 60 A---EGVD---V------------------VL--TS----ADHPSGTDRLSEVA------RIKGWDADDIIVNVQGDEPL 103 (253)
T ss_dssp T---TTCC---E------------------EE--CC----TTCCCHHHHHHHHH------HHHTCCTTCEEEECCTTCTT
T ss_pred H---cCCe---E------------------EE--eC----CCCCChHHHHHHHH------HhcCcCCCCEEEEEeCCccc
Confidence 4 3432 1 11 00 01234544444443 22322256899999999988
Q ss_pred ccccc-hHHhHHHhhc-CccceeeeccC-------CcccccCcEEEEecCCCceEEEEEeccC--CCHHHHhcCCCCCCC
Q 009878 197 LFKAI-PASLGVSATK-QYHVNSLAVPR-------KAKEAIGGITRLTHADGRSMVINVEYNQ--LDPLLRATGFPDGDV 265 (523)
Q Consensus 197 ~~~~d-p~~lG~~~~~-~~~~~~~vv~r-------~~~e~~G~i~~~~~~~G~~~v~nvEYse--l~~~~~~~~~~~g~~ 265 (523)
....+ -.++..+.++ +..+++.+++- +|+. ++ ++ .+.+|+. +-+++ +|.. + +...
T Consensus 104 i~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~k-vv--~d~~g~~----l~fsr~~ip~~----r--~~~~ 169 (253)
T 4fcu_A 104 LPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VK-VV--MSKQNEA----LYFSRATIPYD----R--DGAK 169 (253)
T ss_dssp CCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CE-EE--ECTTSBE----EEEESSCCSCC----T--TTSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cE-EE--ECCCCeE----EEecCCCCCCC----C--Cccc
Confidence 64322 2345555444 45666665552 2322 22 22 2567763 22333 3211 0 0000
Q ss_pred c-cCC-CCCCCccceeeEEEehhhhHHHH
Q 009878 266 N-CET-GYSPFPGNINQLILELGPYMEEL 292 (523)
Q Consensus 266 ~-~~~-g~~~f~gNinnl~~~l~~~~~~l 292 (523)
. ..+ .. .+-.|+....|+-+++.+..
T Consensus 170 ~~~~~~~~-~~~~~~GiY~f~~~~l~~~~ 197 (253)
T 4fcu_A 170 RDEPTLHT-QAFRHLGLYAYRVSLLQEYV 197 (253)
T ss_dssp SSSCCCCS-CCEEEEEEEEEEHHHHHHHT
T ss_pred cccccccc-ceeEEEEEEEeCHHHHHHHH
Confidence 0 000 01 12359999999999877655
No 41
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=97.53 E-value=5.9e-05 Score=70.27 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=45.2
Q ss_pred EEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHHHh
Q 009878 40 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 117 (523)
Q Consensus 40 avvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l~~ 117 (523)
.+|+||||.|||||. .||.++|+. |++++++.++++++.. --.++|.|+.. ++.+.+++++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~~---g~pli~~~l~~l~~~~------------~~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKLC---GRCLIDYVVSPLLKSK------------VNNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEET---TEEHHHHHHHHHHSSS------------CCCEEEECCTT-CHHHHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCccEEEEC---CEEHHHHHHHHHHHCC------------CCEEEEEeCCC-hHHHHHHHHh
Confidence 578999999999987 799999995 9999999999886531 12456666655 6888999987
No 42
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=97.52 E-value=0.00012 Score=71.14 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=50.3
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 116 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l~ 116 (523)
++++|+||||.|||||.+.||.++|+. |+|++++.++.+++.. .+ .+++.++....+...+++.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~---Gkpll~~~l~~~~~~~------------~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLD---GQTLIERAVDGLLDSG------------VVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEET---TEEHHHHHHHHHHHTS------------CCCEEEEEECGGGHHHHHHHHG
T ss_pred ceEEEEECCCCCccCCCCCCceEEEEC---CeEHHHHHHHHHHhCC------------CCCeEEEECChHHHHHHHHHhc
Confidence 689999999999999998999999995 9999999999886541 13 4566666555466666654
No 43
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=97.45 E-value=0.00023 Score=72.96 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=101.9
Q ss_pred eEEEEecCCCCccCC----cCCCcccccccCCCC-cchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHH
Q 009878 39 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 113 (523)
Q Consensus 39 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g-ksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~ 113 (523)
+.+|+||||.||||. ...||.++|+. | +|+||+.++++.... + .-.++|.|...-.+.+.+
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---G~~pli~~~l~~l~~~~---~--------~~~iiVvt~~~~~~~i~~ 68 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLF---EGKTLLEATLERLAPLV---P--------PERTLLAVRRDQEAVARP 68 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCG---GGCBHHHHHHHHHTTTS---C--------GGGEEEEEEGGGHHHHGG
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcC---CCChHHHHHHHHHhCcC---C--------CCCEEEEcChHHHHHHHH
Confidence 578999999999997 45799999996 6 999999999886531 1 123456565433333333
Q ss_pred HHHhCCCCCCCCCcEEEEEcCceeeeecCCCceeecCCCCCccccccCCCchhhHHHhhcChhHHHHHCCceEEEEEeCC
Q 009878 114 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 193 (523)
Q Consensus 114 ~l~~~~~fGl~~~~V~~f~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~~L~~sGlld~l~~~G~~yi~v~~vD 193 (523)
++.+ + +. ++ + ..|.|.|........ +... .+-+++.+.+.|
T Consensus 69 ~l~~----------~--------~~--------i~--e------~~~~gta~ai~~a~~---l~~~--~~~~~~lvl~~D 109 (337)
T 2cu2_A 69 YADG----------I--------RL--------LL--E------PLGRDTAGAVLLGVA---EALK--EGAERLLVLPAD 109 (337)
T ss_dssp GCSS----------S--------EE--------EE--E------SSCCHHHHHHHHHHH---HHHH--HTCSEEEEEESS
T ss_pred Hhcc----------C--------ce--------Ee--c------CCCCCcHHHHHHHHH---Hhcc--CCCCEEEEEECC
Confidence 3221 0 10 11 1 123455554333221 2211 135688999999
Q ss_pred Cccccccch-----HHhHHHhhcCccceeeeccCCcccccCcEEEEecCC--CceEEEEEeccCCCHHHHhcCCCCCCCc
Q 009878 194 NGLLFKAIP-----ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMVINVEYNQLDPLLRATGFPDGDVN 266 (523)
Q Consensus 194 N~L~~~~dp-----~~lG~~~~~~~~~~~~vv~r~~~e~~G~i~~~~~~~--G~~~v~nvEYsel~~~~~~~~~~~g~~~ 266 (523)
.++....+. .++-++.+ +..+++-+.+..|....|.+..- .+ +-.++ ..+.|=|....++ +..
T Consensus 110 ~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~~~t~yG~I~~~--~~~~~~~~V--~~f~EKp~~~~a~-----~~~ 179 (337)
T 2cu2_A 110 HYVGDDEAYREALATMLEAAEE-GFVVALGLRPTRPETEYGYIRLG--PREGAWYRG--EGFVEKPSYAEAL-----EYI 179 (337)
T ss_dssp CEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSCCSSSCEEEEE--EEETTEEEE--EEEECCCCHHHHH-----HHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCCCCCCceEEEEC--CcccccCeE--EEEEeCCChHHHH-----HHh
Confidence 865421111 11222223 56666666676666677876431 11 10122 3333333221111 000
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHhh
Q 009878 267 CETGYSPFPGNINQLILELGPYMEELKK 294 (523)
Q Consensus 267 ~~~g~~~f~gNinnl~~~l~~~~~~l~~ 294 (523)
..| |.-|...++|+.+.+.+.+++
T Consensus 180 -~~g---~~~n~Giy~f~~~~ll~~l~~ 203 (337)
T 2cu2_A 180 -RKG---YVWNGGVFAFAPATMAELFRR 203 (337)
T ss_dssp -HTT---CEEEEEEEEECHHHHHHHHHH
T ss_pred -hcC---CEEEEEEEEEeHHHHHHHHHH
Confidence 012 235999999999887666654
No 44
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=97.43 E-value=4e-05 Score=73.66 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=37.5
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++.+.
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l~~i~---g~pll~~~i~~l~~~ 48 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLAH 48 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHTS
T ss_pred ceeEEEECCcCccccCCCCCcceeeEC---CEEHHHHHHHHHHhC
Confidence 578899999999999977899999995 999999999988653
No 45
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=97.43 E-value=2.6e-05 Score=76.70 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=33.8
Q ss_pred EEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHH
Q 009878 41 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 41 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
+|+||||.||||+. +.||.++|+. |++++++.++.+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~---gkpli~~~l~~l~~ 42 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAH---GQTLFEHSVNSFAA 42 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEET---TEEHHHHHHGGGGG
T ss_pred EEEEcCCCCcccccCCCCCCccccEEC---CeEHHHHHHHHHhc
Confidence 68999999999963 7899999996 99999999998764
No 46
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=97.41 E-value=0.00014 Score=72.75 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=49.6
Q ss_pred ceEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~ 113 (523)
.+.+|+||||.||||+. +.||.++|+. |++++++.++++... .+ .++|.|+ +..+.+.+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------gi~~i~vv~~-~~~~~i~~ 70 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA-------------GITEIVLVTH-SSKNSIEN 70 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEEC-GGGHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEEC---CeEHHHHHHHHHHHC-------------CCCEEEEEeC-CCHHHHHH
Confidence 46789999999999985 6799999996 999999999998754 23 3445554 45788888
Q ss_pred HHHh
Q 009878 114 LLES 117 (523)
Q Consensus 114 ~l~~ 117 (523)
++.+
T Consensus 71 ~~~~ 74 (302)
T 2e3d_A 71 HFDT 74 (302)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 8864
No 47
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=97.41 E-value=9.8e-05 Score=72.37 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=37.5
Q ss_pred ceEEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.||||+ .+.||.++|+. |+|++++.++++...
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~---gkpli~~~l~~l~~~ 69 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQIEFLKEK 69 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeEC---CEEHHHHHHHHHHHC
Confidence 5788999999999998 47899999995 999999999998764
No 48
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=97.40 E-value=0.00012 Score=73.22 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=49.5
Q ss_pred ceEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHH
Q 009878 38 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 113 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~ 113 (523)
.+.+|+||||.||||+. ..||.++|+. |++++++.++.+... .+. ++|.| .+..+.+.+
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------g~~~i~vv~-~~~~~~i~~ 76 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEA-------------GIEQMIFVT-GRGKSALED 76 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEE-CTTCHHHHH
T ss_pred ccEEEEECCCCccccCccccCCCceeeeEC---CeEHHHHHHHHHHhC-------------CCCEEEEEe-CCCHHHHHH
Confidence 67889999999999984 6799999996 999999999998754 233 34444 445788888
Q ss_pred HHHh
Q 009878 114 LLES 117 (523)
Q Consensus 114 ~l~~ 117 (523)
++.+
T Consensus 77 ~~~~ 80 (297)
T 2ux8_A 77 HFDI 80 (297)
T ss_dssp HTSC
T ss_pred HHhh
Confidence 8764
No 49
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=97.40 E-value=0.00014 Score=69.62 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=37.7
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
.+.+|+||||.|||||.+.||.++|+. |+|++++.++.+++.
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i~---Gkpli~~~i~~l~~~ 54 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLKS 54 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEET---TEETTHHHHHHHHHC
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEEC---CeEHHHHHHHHHHcC
Confidence 578899999999999977799999995 999999999988653
No 50
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=97.28 E-value=0.00032 Score=66.24 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
++.+|+||||.||||| ..||.++|+. |++++++.++.+..
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i~---G~pli~~~l~~l~~ 45 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLELN---GKPLWQHVADALMT 45 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEET---TEEHHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeEC---ceeHHHHHHHHHHh
Confidence 5789999999999998 5799999995 99999999998863
No 51
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.22 E-value=0.00023 Score=72.20 Aligned_cols=61 Identities=25% Similarity=0.200 Sum_probs=47.2
Q ss_pred eEEEEecCCCCccCCc---CCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCccc-EEEEcCccchHHHHHH
Q 009878 39 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQEL 114 (523)
Q Consensus 39 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iP-l~IMtS~~T~e~t~~~ 114 (523)
+.+|+||||.||||+. ..||.++|+. |+|++++.++.+... .+. ++|.|+ +..+.+.++
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------gi~~iivv~~-~~~~~i~~~ 75 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAEL-------------GATRLAIITA-PNKAGVLAH 75 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEEC-TTCHHHHHT
T ss_pred eEEEEECCCCccccCccccCCCceeeeEC---CEEHHHHHHHHHHhC-------------CCCEEEEEec-CcHHHHHHH
Confidence 6789999999999975 6899999996 999999999988753 233 444444 456777776
Q ss_pred HH
Q 009878 115 LE 116 (523)
Q Consensus 115 l~ 116 (523)
+.
T Consensus 76 ~~ 77 (323)
T 2pa4_A 76 FE 77 (323)
T ss_dssp TS
T ss_pred Hh
Confidence 64
No 52
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.0002 Score=67.30 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=34.1
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
++.+|+||||.|||||. ||.++|+. |+|++++.++.+..
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i~---g~pll~~~l~~l~~ 40 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKID---NTPIIMRTIRIYGD 40 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBSS---SSBHHHHHHHHTTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEeC---ceEHHHHHHHHHHh
Confidence 36789999999999984 99999995 99999999888743
No 53
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=97.07 E-value=0.00041 Score=66.40 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=40.7
Q ss_pred hcceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcccEEEEcCccchHHHHHHH
Q 009878 36 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 36 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~iPl~IMtS~~T~e~t~~~l 115 (523)
..++.+|+||||.|||||.. ||.++|+. |++++++.++.+... . -.++|.| +.++.+.+++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i~---g~pli~~~l~~l~~~---~----------~~i~vv~--~~~~~~~~~~ 76 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRVG---GCEIILRTMKLLSPH---V----------SEFIIVA--SRYADDIDAF 76 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEET---TEEHHHHHHHHHGGG---E----------EEEEEEE--STTHHHHHHH
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEEC---CEEHHHHHHHHHHHh---C----------CEEEEEe--CChHHHHHHH
Confidence 44688999999999999754 99999995 999999999887543 1 1345555 4556666665
Q ss_pred H
Q 009878 116 E 116 (523)
Q Consensus 116 ~ 116 (523)
.
T Consensus 77 ~ 77 (232)
T 2xme_A 77 L 77 (232)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=97.05 E-value=0.00031 Score=67.83 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=27.2
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIEC 78 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~ 78 (523)
++++|+||||.|||||.+ ||.++|+. |+|++++.++.
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i~---gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQVG---GRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBCS---SSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEEC---CEEHHHHHHHh
Confidence 578899999999999976 99999995 99999999887
No 55
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.00041 Score=66.21 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=33.5
Q ss_pred eEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHH
Q 009878 39 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 80 (523)
Q Consensus 39 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~ 80 (523)
+.+|+||||.|+||| .||.++|+. |+|++++.++.+.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~~---G~pli~~~~~~l~ 37 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVMLC---GKKLIEWVLEKYS 37 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEET---TEEHHHHHHHHHT
T ss_pred CEEEEECCCchhhCC--CCCcccEEC---CeeHHHHHHHHhc
Confidence 467999999999999 899999995 9999999999874
No 56
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=96.80 E-value=0.00024 Score=66.98 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=35.6
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||.||||| .||.++|+. |++++++.++.+...
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i~---g~pll~~~l~~l~~~ 53 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEIK---GKKVIERVYETAKSV 53 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHHH---HHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCccCC--CCcccceEC---ceEHHHHHHHHHHHh
Confidence 5788999999999998 799999996 999999999988643
No 57
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=96.65 E-value=0.0017 Score=67.21 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=45.7
Q ss_pred EEEEecCCCCccCC---cCCCcccccccCCCCcchHHHHHHHHHHHHHHhhccccCCcCcc-cEEEEcCccchHHHHHHH
Q 009878 40 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 115 (523)
Q Consensus 40 avvlLaGGlGTRLG---~~~pK~~lpv~~~~gksfL~l~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMtS~~T~e~t~~~l 115 (523)
.+|+||||.||||+ ...||.++|+. |++++++.++++.+. .+ .++|.|+.. +.+++
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~---g~pli~~~l~~l~~~-------------~~~~i~vv~~~~----i~~~~ 61 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPIL---SKPLIEYQIEYLRKC-------------GIRDITVIVSSK----NKEYF 61 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEECGG----GHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeEC---CEeHHHHHHHHHHHC-------------CCCEEEEEeCHH----HHHHh
Confidence 47899999999997 46799999996 999999999998764 12 345555544 67777
Q ss_pred HhC
Q 009878 116 ESN 118 (523)
Q Consensus 116 ~~~ 118 (523)
++.
T Consensus 62 ~~~ 64 (401)
T 2ggo_A 62 EKK 64 (401)
T ss_dssp HHH
T ss_pred hcc
Confidence 653
No 58
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=96.48 E-value=0.0016 Score=67.77 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=37.0
Q ss_pred ceEEEEecCCCCccCCcCCCcccccccCCCCcchHHHHHHHHHH
Q 009878 38 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 81 (523)
Q Consensus 38 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~ 81 (523)
++++|+||||.|||||.+.||.++|+. |+|++++.++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l~---GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEEB---TEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcceEEEC---CeEHHHHHHHHHHc
Confidence 578899999999999977799999996 99999999998864
No 59
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=96.24 E-value=0.0037 Score=59.97 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=33.8
Q ss_pred ceEEEEecCCC---CccCCcCCCcccccccCCCCcchHHHHHHHHHHH
Q 009878 38 NAAFVLVAGGL---GERLGYNGIKVALPAETTTGTCFLQNYIECILAL 82 (523)
Q Consensus 38 kvavvlLaGGl---GTRLG~~~pK~~lpv~~~~gksfL~l~~~~i~~l 82 (523)
++.+|+||||. |+||| ..||.++|+. |+|++++.++++...
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i~---g~pll~~~l~~l~~~ 45 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYR---GRPMVEWVLEALYAA 45 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEET---TEETHHHHHHHHHHT
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEEC---CEEHHHHHHHHHHhc
Confidence 36789999999 55554 3699999995 999999999998764
No 60
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.90 E-value=45 Score=29.48 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=12.2
Q ss_pred eeecceeeeeee--EEEEecCCCceecC
Q 009878 497 RIRGFKINKLEQ--LERSYSEPGKFSLK 522 (523)
Q Consensus 497 ~~rg~~~~~~~~--~~~~~~~~g~~~~~ 522 (523)
-|-||++++..- .++.|.=|-.|+|.
T Consensus 47 ~L~GW~L~r~v~g~~~~~y~Fp~~~~L~ 74 (139)
T 2lll_A 47 SLGNWRIKRQVLEGEEIAYKFTPKYILR 74 (139)
T ss_dssp ECSSCEEEEEETTSCEEEEECCTTCEEC
T ss_pred ccCCCEEEEecCCCccEEEEECCCcEEC
Confidence 566666666411 12344444444443
Done!