Query 009879
Match_columns 523
No_of_seqs 154 out of 229
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:02:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009879.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009879hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uw4a_ d.58.7.4 (A:) RNA proc 100.0 4.7E-36 3.4E-40 253.4 11.5 90 8-99 2-91 (91)
2 d1fxla1 d.58.7.1 (A:37-118) Hu 97.9 2.3E-05 1.6E-09 60.4 8.5 78 7-93 2-79 (82)
3 d1whxa_ d.58.7.1 (A:) Probable 97.9 2.2E-05 1.6E-09 63.5 8.3 79 6-99 9-87 (111)
4 d1b7fa2 d.58.7.1 (A:205-289) S 97.7 7.3E-05 5.3E-09 58.3 9.0 83 4-93 3-85 (85)
5 d1x4aa1 d.58.7.1 (A:9-103) Spl 97.7 0.00016 1.2E-08 57.5 10.6 78 5-94 12-89 (95)
6 d1b7fa1 d.58.7.1 (A:123-204) S 97.6 7.8E-05 5.7E-09 57.4 8.1 78 7-93 2-79 (82)
7 d1whya_ d.58.7.1 (A:) Putative 97.6 0.00014 1.1E-08 58.2 9.6 77 5-94 15-91 (97)
8 d2b0ga1 d.58.7.1 (A:1-83) Spli 97.5 0.00025 1.8E-08 55.1 9.8 75 6-93 7-81 (83)
9 d1whwa_ d.58.7.1 (A:) Probable 97.5 0.00032 2.3E-08 56.0 10.4 86 3-97 4-89 (99)
10 d1fxla2 d.58.7.1 (A:119-203) H 97.5 0.00024 1.7E-08 55.6 9.4 81 6-93 5-85 (85)
11 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 97.5 0.00043 3.1E-08 55.0 11.0 83 6-97 6-88 (93)
12 d1x5sa1 d.58.7.1 (A:8-97) Cold 97.5 0.00019 1.4E-08 56.2 8.6 80 6-94 4-83 (90)
13 d2cq3a1 d.58.7.1 (A:110-202) R 97.5 0.00049 3.6E-08 54.5 10.8 80 4-94 8-87 (93)
14 d2cpja1 d.58.7.1 (A:65-150) No 97.5 0.0003 2.2E-08 55.3 9.4 78 4-96 5-82 (86)
15 d1rk8a_ d.58.7.1 (A:) RNA-bind 97.5 0.00029 2.1E-08 55.4 9.1 81 5-94 5-85 (88)
16 d2cq0a1 d.58.7.1 (A:231-320) E 97.4 0.00029 2.1E-08 55.5 9.1 79 4-93 5-85 (90)
17 d2ghpa1 d.58.7.1 (A:116-196) U 97.4 0.0002 1.5E-08 55.0 7.0 77 8-93 2-78 (81)
18 d2cqca1 d.58.7.1 (A:109-191) A 97.3 0.00023 1.7E-08 55.1 7.1 73 3-79 5-77 (83)
19 d2cpha1 d.58.7.1 (A:454-547) P 97.3 0.00064 4.7E-08 54.1 9.7 85 3-95 4-89 (94)
20 d2cpfa1 d.58.7.1 (A:362-446) P 97.3 0.00039 2.9E-08 53.8 8.2 77 10-94 1-79 (85)
21 d1no8a_ d.58.7.1 (A:) Nuclear 97.3 0.00066 4.8E-08 52.1 9.3 76 9-94 2-77 (78)
22 d2cqia1 d.58.7.1 (A:1-90) Nucl 97.3 0.00086 6.3E-08 52.7 10.2 82 1-93 2-83 (90)
23 d1p1ta_ d.58.7.1 (A:) Cleavage 97.3 0.00017 1.2E-08 58.1 5.9 78 9-95 10-87 (104)
24 d2cpza1 d.58.7.1 (A:383-484) C 97.3 0.00053 3.9E-08 55.3 8.9 78 5-93 16-95 (102)
25 d1wexa_ d.58.7.1 (A:) Heteroge 97.3 0.00096 7E-08 53.8 10.3 83 6-102 14-97 (104)
26 d2cq2a1 d.58.7.1 (A:25-125) Al 97.3 0.00061 4.4E-08 55.4 9.1 79 5-93 16-96 (101)
27 d2f9da1 d.58.7.1 (A:12-125) Pr 97.2 0.001 7.3E-08 53.9 10.3 79 4-94 4-82 (114)
28 d2msta_ d.58.7.1 (A:) Neural R 97.2 0.00038 2.8E-08 52.3 6.6 67 9-80 1-67 (75)
29 d1x5ua1 d.58.7.1 (A:7-99) Spli 97.2 0.0011 8.3E-08 52.5 9.6 83 2-93 4-86 (93)
30 d1wg4a_ d.58.7.1 (A:) Splicing 97.1 0.002 1.5E-07 51.7 10.7 71 5-86 13-83 (98)
31 d1u6fa1 d.58.7.1 (A:1-139) RNA 97.1 0.00096 7E-08 56.0 8.8 79 5-94 40-120 (139)
32 d2u2fa_ d.58.7.1 (A:) Splicing 97.1 0.0013 9.2E-08 51.4 8.8 79 8-95 2-80 (85)
33 d3begb1 d.58.7.1 (B:121-207) S 97.0 0.00092 6.7E-08 52.3 7.7 65 9-84 2-66 (87)
34 d1wi8a_ d.58.7.1 (A:) Eukaryot 97.0 0.0024 1.8E-07 50.9 10.1 83 4-96 12-94 (104)
35 d1nu4a_ d.58.7.1 (A:) Spliceso 97.0 0.00041 3E-08 54.7 5.3 78 6-93 2-81 (91)
36 d1wi6a1 d.58.7.1 (A:69-143) Ri 96.9 0.0023 1.7E-07 48.9 9.3 72 10-97 1-72 (75)
37 d2cq1a1 d.58.7.1 (A:51-138) Po 96.9 0.0028 2E-07 49.3 9.8 82 4-98 5-86 (88)
38 d1x5oa1 d.58.7.1 (A:8-108) RNA 96.9 0.002 1.5E-07 51.6 9.0 75 4-83 15-89 (101)
39 d2adba1 d.58.7.1 (A:177-284) P 96.9 0.0014 1E-07 53.0 8.1 87 1-98 1-87 (108)
40 d2adca2 d.58.7.1 (A:444-531) P 96.9 0.0029 2.1E-07 49.1 9.6 75 7-93 10-84 (88)
41 d2adca1 d.58.7.1 (A:335-443) P 96.9 0.0031 2.2E-07 50.3 10.0 80 7-100 2-82 (109)
42 d1x4ea1 d.58.7.1 (A:8-79) RNA- 96.9 0.00084 6.1E-08 50.3 6.1 67 10-80 1-67 (72)
43 d1wg1a_ d.58.7.1 (A:) Probable 96.8 0.0017 1.3E-07 51.0 7.9 78 5-98 3-80 (88)
44 d1cvja2 d.58.7.1 (A:91-179) Po 96.8 0.0011 8.2E-08 51.9 6.6 76 7-93 8-83 (89)
45 d2cqda1 d.58.7.1 (A:1-103) RNA 96.8 0.004 2.9E-07 50.0 10.1 85 6-100 9-93 (103)
46 d1x4ha1 d.58.7.1 (A:8-105) RNA 96.8 0.0019 1.4E-07 50.6 7.7 86 4-93 5-91 (98)
47 d2cpea1 d.58.7.1 (A:353-453) R 96.8 0.0024 1.8E-07 50.3 8.3 82 4-93 5-93 (101)
48 d2cpia1 d.58.7.1 (A:101-189) E 96.8 0.0011 8.2E-08 52.2 6.2 72 6-79 7-82 (89)
49 d1hd0a_ d.58.7.1 (A:) Heteroge 96.7 0.0021 1.5E-07 49.0 7.4 65 9-78 1-65 (75)
50 d2cqga1 d.58.7.1 (A:96-185) TA 96.7 0.0032 2.3E-07 49.9 8.7 80 3-93 4-83 (90)
51 d2cq4a1 d.58.7.1 (A:132-232) R 96.6 0.0047 3.4E-07 49.9 9.1 67 8-79 19-85 (101)
52 d2ghpa2 d.58.7.1 (A:41-115) U4 96.6 0.0035 2.5E-07 47.9 7.7 64 8-78 1-64 (75)
53 d2cqba1 d.58.7.1 (A:1-89) Pept 96.6 0.0061 4.4E-07 47.5 9.2 77 8-93 6-82 (89)
54 d1cvja1 d.58.7.1 (A:11-90) Pol 96.5 0.0037 2.7E-07 47.8 7.7 75 10-93 3-77 (80)
55 d1l3ka1 d.58.7.1 (A:8-91) Nucl 96.5 0.0034 2.5E-07 48.8 7.6 72 2-78 1-72 (84)
56 d1x4ga1 d.58.7.1 (A:8-103) Nuc 96.5 0.0046 3.4E-07 49.3 8.5 74 5-93 16-89 (96)
57 d2cpda1 d.58.7.1 (A:223-308) A 96.5 0.0051 3.7E-07 47.5 8.3 70 9-93 10-79 (86)
58 d2cqpa1 d.58.7.1 (A:917-1002) 96.5 0.0054 4E-07 47.2 8.3 69 5-78 7-76 (86)
59 d2cpxa1 d.58.7.1 (A:291-392) R 96.5 0.0062 4.5E-07 48.0 8.8 78 5-93 16-95 (102)
60 d1x5ta1 d.58.7.1 (A:8-90) Spli 96.5 0.005 3.7E-07 47.1 8.0 76 10-94 1-77 (83)
61 d1weza_ d.58.7.1 (A:) Heteroge 96.4 0.0037 2.7E-07 50.0 7.3 71 3-80 11-81 (102)
62 d2cqha1 d.58.7.1 (A:2-81) IGF- 96.4 0.0046 3.3E-07 47.5 7.4 71 8-94 2-74 (80)
63 d1x0fa1 d.58.7.1 (A:183-257) N 96.4 0.0034 2.5E-07 48.3 6.5 64 9-77 1-64 (75)
64 d1uawa_ d.58.7.1 (A:) Musashi- 96.3 0.0038 2.8E-07 48.0 6.4 66 8-78 1-66 (77)
65 d2disa1 d.58.7.1 (A:8-103) Hyp 96.3 0.015 1.1E-06 45.7 10.0 82 7-93 1-82 (96)
66 d1l3ka2 d.58.7.1 (A:103-181) N 96.2 0.01 7.5E-07 44.8 8.3 66 8-78 3-68 (79)
67 d1fjca_ d.58.7.1 (A:) Nucleoli 96.1 0.0046 3.3E-07 48.9 6.1 77 4-94 13-89 (96)
68 d2ghpa3 d.58.7.1 (A:206-291) U 96.0 0.0084 6.1E-07 46.5 7.3 78 5-93 2-82 (86)
69 d1wg5a_ d.58.7.1 (A:) Heteroge 96.0 0.012 8.7E-07 47.0 8.4 71 3-78 11-81 (104)
70 d2bz2a1 d.58.7.1 (A:35-113) Ne 95.9 0.017 1.3E-06 43.9 8.5 74 3-93 1-74 (79)
71 d1u1qa_ d.58.7.1 (A:) Nuclear 95.9 0.013 9.6E-07 49.6 8.5 80 4-93 94-173 (183)
72 d1wf2a_ d.58.7.1 (A:) Heteroge 95.8 0.02 1.5E-06 45.6 8.8 74 5-95 13-87 (98)
73 d1x4ba1 d.58.7.1 (A:8-110) Het 95.7 0.012 8.8E-07 47.6 7.2 67 7-78 20-86 (103)
74 d1fjeb1 d.58.7.1 (B:1-91) Nucl 95.5 0.0049 3.6E-07 48.7 4.0 79 3-93 9-88 (91)
75 d1owxa_ d.58.7.1 (A:) Lupus LA 95.4 0.033 2.4E-06 45.3 9.1 68 4-81 8-76 (113)
76 d1wela1 d.58.7.1 (A:412-523) R 95.4 0.016 1.2E-06 47.0 6.9 69 4-79 15-85 (112)
77 d1x4fa1 d.58.7.1 (A:8-106) Mat 95.4 0.026 1.9E-06 45.0 8.0 74 5-93 16-92 (99)
78 d1zh5a2 d.58.7.1 (A:105-189) L 95.4 0.02 1.4E-06 44.4 7.1 68 7-80 6-73 (85)
79 d1weya_ d.58.7.1 (A:) Calcipre 94.9 0.014 1E-06 47.4 5.1 78 6-96 4-84 (104)
80 d1wf0a_ d.58.7.1 (A:) TAR DNA- 94.8 0.039 2.8E-06 42.7 7.2 72 6-93 4-75 (88)
81 d1x4da1 d.58.7.1 (A:8-96) Matr 94.4 0.076 5.5E-06 41.4 8.1 73 8-94 9-83 (89)
82 d2cpya1 d.58.7.1 (A:536-638) R 93.9 0.049 3.5E-06 43.0 6.1 67 7-78 8-74 (103)
83 d1u1qa_ d.58.7.1 (A:) Nuclear 93.3 0.057 4.1E-06 45.5 5.9 70 3-76 2-71 (183)
84 d1u2fa_ d.58.7.1 (A:) Splicing 92.1 0.0095 6.9E-07 46.2 -0.7 67 9-81 3-75 (90)
85 d1o0pa_ d.58.7.1 (A:) Splicing 85.5 0.95 6.9E-05 35.8 6.8 79 10-94 7-94 (104)
86 d2dita1 d.58.7.1 (A:8-106) HIV 84.9 0.52 3.8E-05 37.2 4.9 75 8-93 9-92 (99)
87 d1jmta_ d.58.7.3 (A:) d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.7e-36 Score=253.37 Aligned_cols=90 Identities=34% Similarity=0.661 Sum_probs=86.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
+|||||||||+|||++|+++|+++ ++++|+||++||.+.++++||||||+|++.|+|.+|++.|+|++|+|++|++++
T Consensus 2 tKvVvRrLPP~Lte~~F~~~l~~~--~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~~g~~~~ 79 (91)
T d1uw4a_ 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred ceEEEecCCCCCCHHHHHHHhCCc--CceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcCCCCEee
Confidence 799999999999999999999985 468999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCC
Q 009879 88 AIVEYAPSQRVP 99 (523)
Q Consensus 88 A~VEfAPYQKvP 99 (523)
|+|||||||||.
T Consensus 80 a~VE~AP~qkv~ 91 (91)
T d1uw4a_ 80 AIVEFAPFQKAA 91 (91)
T ss_dssp CEEEECSSCCC-
T ss_pred eEEEEcCccccC
Confidence 999999999983
No 2
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.88 E-value=2.3e-05 Score=60.42 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=58.8
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
+++|.|.+||+.+||+++.+.+... |.|.....+.-.... ..-.-|||.|.+.+++....+.++|+.|.+ .
T Consensus 2 ~t~l~V~nLp~~~te~~l~~~f~~~--G~v~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g-----~ 72 (82)
T d1fxla1 2 KTNLIVNYLPQNMTQEEFRSLFGSI--GEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----K 72 (82)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh--CCcccccceeeccCC--CceeeEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 6789999999999999999999874 346555544222211 122349999999999999999999998843 3
Q ss_pred eeEEEec
Q 009879 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
...|+||
T Consensus 73 ~l~v~~A 79 (82)
T d1fxla1 73 TIKVSYA 79 (82)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 5778877
No 3
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.86 E-value=2.2e-05 Score=63.47 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
..+.|.|++||+.+|++++.+.+... |.|......+. -.-|||.|.+.+++..-++.++|+.|.+.
T Consensus 9 ~~~~l~V~nLp~~~t~~~L~~~F~~f--G~I~~v~l~~~--------kg~afV~f~~~~~A~~A~~~lng~~~~gr---- 74 (111)
T d1whxa_ 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEG--------GITAIVEFLEPLEARKAFRHLAYSKFHHV---- 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSS--------SSCEEEEESCHHHHHHHHHHHTTCBSSSS----
T ss_pred CCCEEEEECCCCCCCHHHHHhhhhcc--CCccEEEeecc--------CceEEEEEcCHHHHHHHHHHHcCCccCCC----
Confidence 34679999999999999999999864 46766543211 23699999999999999999999999642
Q ss_pred eeeEEEeccCCCCC
Q 009879 86 FKAIVEYAPSQRVP 99 (523)
Q Consensus 86 ~~A~VEfAPYQKvP 99 (523)
+..|+||+.+...
T Consensus 75 -~l~v~~a~~~~~~ 87 (111)
T d1whxa_ 75 -PLYLEWAPIGVFG 87 (111)
T ss_dssp -BCEEEEEETTTTC
T ss_pred -eEEEEECCCCccc
Confidence 5578999876544
No 4
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=97.72 E-value=7.3e-05 Score=58.35 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=61.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
....++|-|.+||+.+||+++.+.+... +.|.....+.-+.+.+ .-.-|||.|.+.+++...++.++|..|...
T Consensus 3 ~~~~t~lfV~nlp~~~te~~l~~~F~~~--G~i~~~~~~~d~~~g~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-- 76 (85)
T d1b7fa2 3 SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLTGR--PRGVAFVRYNKREEAQEAISALNNVIPEGG-- 76 (85)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCCCTTC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEeeeeeeccccccc--CceeEEEEECCHHHHHHHHHHHCCCEeCCC--
Confidence 3467889999999999999999999874 3565444433222221 123599999999999999999999887543
Q ss_pred CeeeeEEEec
Q 009879 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
..+..|+||
T Consensus 77 -~~~l~V~~A 85 (85)
T d1b7fa2 77 -SQPLSVRLA 85 (85)
T ss_dssp -SSCCEEEEC
T ss_pred -CeEEEEEEC
Confidence 346778776
No 5
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.67 E-value=0.00016 Score=57.54 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=59.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+.++|.|.+||+++|++++.+.+... +.|.......- ...-..|||.|.+.+++..-++.++|+.|.+
T Consensus 12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~~~~~-----~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g---- 80 (95)
T d1x4aa1 12 NNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNR-----RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---- 80 (95)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCS-----SSSSCCEEEEESCHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcC--CceEEEEeccc-----ccccceEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 567899999999999999999999875 34555443211 1112459999999999999999999999833
Q ss_pred eeeeEEEecc
Q 009879 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
..-.|+||-
T Consensus 81 -~~l~V~~a~ 89 (95)
T d1x4aa1 81 -YRLRVEFPR 89 (95)
T ss_dssp -EECEEECCC
T ss_pred -EEEEEEecc
Confidence 356788874
No 6
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=97.65 E-value=7.8e-05 Score=57.41 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=56.5
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
++.|.|.+||+.+||+++.+.+... +.|.....+.-+.+.+ ...-|||.|.+.+++....+.++|+.|.+ .
T Consensus 2 ~t~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~g~--~~g~afV~f~~~~~A~~ai~~lng~~~~g-----~ 72 (82)
T d1b7fa1 2 NTNLIVNYLPQDMTDRELYALFRAI--GPINTCRIMRDYKTGY--SYGYAFVDFTSEMDSQRAIKVLNGITVRN-----K 72 (82)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTTTE--ECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeeeeecccCC--ccccceEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 5789999999999999999999875 3454433222111111 12249999999999999999999998732 2
Q ss_pred eeEEEec
Q 009879 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
.-.|+||
T Consensus 73 ~l~v~~a 79 (82)
T d1b7fa1 73 RLKVSYA 79 (82)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 5567776
No 7
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.62 E-value=0.00014 Score=58.16 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.|...|.|.+||+++||++|.+.+... +.|..+.+++++ ..|||.|.+.++.....+.+++..|. |.
T Consensus 15 ~Ps~tl~V~nLp~~~t~~~l~~~f~~~--G~i~~~~~~~~~--------~~afV~f~~~~~A~~A~~~l~~~~i~---g~ 81 (97)
T d1whya_ 15 NPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKGD--------SFAYIQYESLDAAQAACAKMRGFPLG---GP 81 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSSS--------CCEEEEESSHHHHHHHHHHHTTCBCS---SS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhh--cccceEeeeccc--------cEEEeccCCHHHHHHHHHHhCCCEeC---CC
Confidence 455789999999999999999999875 356655555432 36999999999999999999999873 33
Q ss_pred eeeeEEEecc
Q 009879 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
..+-.|+||-
T Consensus 82 ~~~l~v~~ak 91 (97)
T d1whya_ 82 DRRLRVDFAK 91 (97)
T ss_dssp SCBCEEEECC
T ss_pred ceEEEEEeCC
Confidence 4578899884
No 8
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}
Probab=97.54 E-value=0.00025 Score=55.11 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
|...|-|++||+.+|++++.+.+..+ |.|....+++++- .-|||.|.+.++...-.+.++|+.|.+.+
T Consensus 7 P~~tl~V~nLp~~~t~~~l~~~f~~~--G~i~~v~~~~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~~~~--- 74 (83)
T d2b0ga1 7 PNQILFLTNLPEETNEMMLSMLFNQF--PGFKEVRLVPNRH-------DIAFVEFTTELQSNAAKEALQGFKITPTH--- 74 (83)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEECTTTC-------SCEEEEESSHHHHHHHHHHHTTCBSSTTC---
T ss_pred CCCEEEEECCCCCCCHHHHHhhhccC--ccEEEeeeecccc-------eeEEEecCCHHHHHHHHHHhCCcEeCCCc---
Confidence 45668899999999999999999875 3565556655431 24999999999999999999999986532
Q ss_pred eeeEEEec
Q 009879 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
.-.|+||
T Consensus 75 -~i~v~~a 81 (83)
T d2b0ga1 75 -AMKITFA 81 (83)
T ss_dssp -BCEEEEC
T ss_pred -EEEEEEe
Confidence 4577776
No 9
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.52 E-value=0.00032 Score=56.01 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=62.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
......||.|.+||+..||+++.+.+..+ +.|....+..-+...++ -.-|||.|.+.+++...++.++++.|.+.
T Consensus 4 ~~~~~~~lfV~nL~~~~t~~~l~~~F~~~--g~v~~v~i~~d~~tg~~--~g~afV~f~~~~~a~~A~~~l~g~~~~gr- 78 (99)
T d1whwa_ 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKP--KGFAFVTFMFPEHAVKAYAEVDGQVFQGR- 78 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCC--CSEEEEEESSHHHHHHHHHHTTTEESSSC-
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhc--CCceeeeeccccccccc--CcceEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 45667899999999999999999999764 34554443322222221 23499999999999999999999987432
Q ss_pred CCeeeeEEEeccCCC
Q 009879 83 GAQFKAIVEYAPSQR 97 (523)
Q Consensus 83 Gne~~A~VEfAPYQK 97 (523)
.-.|++|-..+
T Consensus 79 ----~i~V~~a~~~~ 89 (99)
T d1whwa_ 79 ----MLHVLPSTIKK 89 (99)
T ss_dssp ----EEEEEECCCCS
T ss_pred ----EEEEEECCCCC
Confidence 46788877654
No 10
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.52 E-value=0.00024 Score=55.59 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
..++|.|.+||+.+||+++.+.+... |.|.....+.-+.+. ..-.-|||.|.+.+++....+.++|..|. |..
T Consensus 5 k~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~~~g--~~kg~afV~f~~~~~a~~Ai~~lng~~~~---G~~ 77 (85)
T d1fxla2 5 RDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTG--VSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GAT 77 (85)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCT---TCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--CCccccccccccccc--cCCCeeEEEEcCHHHHHHHHHHhCCCEeC---CCC
Confidence 46789999999999999999999875 345554444322211 12235999999999999999999998763 444
Q ss_pred eeeEEEec
Q 009879 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
.+-.|.||
T Consensus 78 ~~i~V~~A 85 (85)
T d1fxla2 78 EPITVKFA 85 (85)
T ss_dssp SCCEEEEC
T ss_pred EEEEEEeC
Confidence 45667776
No 11
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.51 E-value=0.00043 Score=55.04 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+.+.|.|.+||+++||+++.+.+... |.|.....+.-+.... .-.-|||.|.+.+++..-.+.++|..|-+
T Consensus 6 ~s~tlfV~nlp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----- 76 (93)
T d1h2vz_ 6 KSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKT--ACGFCFVEYYSRADAENAMRYINGTRLDD----- 76 (93)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHTTTSEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH--CCcceecccccccccc--ccceEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 45789999999999999999999875 3566555554333221 11249999999999999999999998732
Q ss_pred eeeEEEeccCCC
Q 009879 86 FKAIVEYAPSQR 97 (523)
Q Consensus 86 ~~A~VEfAPYQK 97 (523)
..-.|+||+-.+
T Consensus 77 r~i~V~~a~~~~ 88 (93)
T d1h2vz_ 77 RIIRTDWDAGFK 88 (93)
T ss_dssp EECEEEEESCCC
T ss_pred EEEEEEEcCCCC
Confidence 366799987443
No 12
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.50 E-value=0.00019 Score=56.19 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=59.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+.-||.|.+||+++||+++.+.+... +.|....++..+....+. .-|||.|.+.+++..-.+.++|+.|-+
T Consensus 4 ~~~kifV~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~~~~~--g~afV~f~~~~~a~~Ai~~l~~~~~~g----- 74 (90)
T d1x5sa1 4 DEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQRSR--GFGFVTFENIDDAKDAMMAMNGKSVDG----- 74 (90)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSSCSCC--SEEEEECSSHHHHHHHHHHHTTCCTTS-----
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhcc--ccccceeecccccccccc--ceEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 45789999999999999999999875 345544444443333222 249999999999999999999998743
Q ss_pred eeeEEEecc
Q 009879 86 FKAIVEYAP 94 (523)
Q Consensus 86 ~~A~VEfAP 94 (523)
..-.|++|.
T Consensus 75 ~~l~V~~a~ 83 (90)
T d1x5sa1 75 RQIRVDQAG 83 (90)
T ss_dssp CCCEEEEEE
T ss_pred EEEEEEEcC
Confidence 256688774
No 13
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.47 E-value=0.00049 Score=54.53 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
.....+|.|.+||+.+|++++.+.+... +.|.+...+...-. .-..|||.|.+.+++..-.+.++|+.|-+
T Consensus 8 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~--G~v~~v~~~~~~~~----~kg~afV~f~~~~~a~~Ai~~l~~~~~~g--- 78 (93)
T d2cq3a1 8 KSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERG----SKGFGFVTFENSADADRAREKLHGTVVEG--- 78 (93)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTT----TCCEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhhc--ceeeeccccccccC----CcceeEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4566789999999999999999999876 35666555433221 13469999999999999999999998843
Q ss_pred CeeeeEEEecc
Q 009879 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
..-.|++|-
T Consensus 79 --~~l~V~~A~ 87 (93)
T d2cq3a1 79 --RKIEVNNAT 87 (93)
T ss_dssp --EECEEEECC
T ss_pred --EEEEEEecC
Confidence 367788873
No 14
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.47 E-value=0.0003 Score=55.28 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=61.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
-.++.+|.|.+||+.+|++++.+.+.+. |.|......+. ..-|||.|.+.++...-...++|..|.+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~i~~~~~--------k~~afV~f~~~~~A~~A~~~l~g~~i~g--- 71 (86)
T d2cpja1 5 FTQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKD--------KGFGFIRLETRTLAEIAKVELDNMPLRG--- 71 (86)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETT--------TTEEEEECSSSHHHHHHHHHHTTCCBTT---
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHh--CCceEeeeecc--------cceEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 3467899999999999999999999874 34554444432 1369999999999999999999999853
Q ss_pred CeeeeEEEeccCC
Q 009879 84 AQFKAIVEYAPSQ 96 (523)
Q Consensus 84 ne~~A~VEfAPYQ 96 (523)
....|+||+..
T Consensus 72 --~~l~V~~A~~~ 82 (86)
T d2cpja1 72 --KQLRVRFACHS 82 (86)
T ss_dssp --BCCEEEESSCC
T ss_pred --EEEEEEECCCc
Confidence 26788888754
No 15
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=97.45 E-value=0.00029 Score=55.40 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+...|.|++||+.+||+++.+.+... +.|....++.-..+.++ -.-|||.|.+.+++....+.++|..|. |
T Consensus 5 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~i~~v~i~~d~~tg~~--~g~afV~f~~~~~A~~A~~~lng~~l~---g- 76 (88)
T d1rk8a_ 5 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFS--KGYALVEYETHKQALAAKEALNGAEIM---G- 76 (88)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSE--EEEEEEEESSHHHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccccccccccccccc--ccceeEEECCHHHHHHHHHHcCCCEEC---C-
Confidence 456789999999999999999999875 34654454432222211 123999999999999999999998773 2
Q ss_pred eeeeEEEecc
Q 009879 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
..-.|+||-
T Consensus 77 -~~l~V~~a~ 85 (88)
T d1rk8a_ 77 -QTIQVDWCF 85 (88)
T ss_dssp -EECEEEESE
T ss_pred -EEEEEEEec
Confidence 356788874
No 16
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.44 E-value=0.00029 Score=55.46 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=59.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCccee--EEEEecCcccHHHHHHHhcCCeeEeC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSR--AYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySR--AYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
..+...|.|.+||+.+||+++.+.+... |.|....++.-+. ...+| |||.|.+.++...-++.++|+.|-+
T Consensus 5 ~~~~~~i~V~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~d~~----t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g- 77 (90)
T d2cq0a1 5 ADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKT----TGQSKGFAFISFHRREDAARAIAGVSGFGYDH- 77 (90)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSS----SCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHh--ccccccccccccc----ccccccceeEEECCHHHHHHHHHHhCCCEECC-
Confidence 3456789999999999999999988774 3566555443222 12344 9999999999999999999998832
Q ss_pred CCCeeeeEEEec
Q 009879 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
..-.|+||
T Consensus 78 ----~~i~v~~a 85 (90)
T d2cq0a1 78 ----LILNVEWA 85 (90)
T ss_dssp ----EECEEEES
T ss_pred ----EEEEEEee
Confidence 25677877
No 17
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.36 E-value=0.0002 Score=55.02 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=52.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
++|.|++||+.+||+++.+.+... |.+.....+.-+...+ ...-|||.|.+.++.....+.++|+.|-+ ..
T Consensus 2 ~tl~v~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~--~~g~afV~f~~~e~A~~Ai~~l~g~~~~g-----~~ 72 (81)
T d2ghpa1 2 CTLWMTNFPPSYTQRNIRDLLQDI--NVVALSIRLPSLRFNT--SRRFAYIDVTSKEDARYCVEKLNGLKIEG-----YT 72 (81)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHT--TCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cEEEEECCCCcCCHHHHHHHHHHh--CcEEeeeeeccccccc--ccceeEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 689999999999999999999875 2332222221111111 12359999999999999999999998843 24
Q ss_pred eEEEec
Q 009879 88 AIVEYA 93 (523)
Q Consensus 88 A~VEfA 93 (523)
-.|+||
T Consensus 73 i~V~~a 78 (81)
T d2ghpa1 73 LVTKVS 78 (81)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 455554
No 18
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.33 E-value=0.00023 Score=55.06 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=54.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
.|.+...|.|.+||+.+||+++.+.+...- .|.....+.-+.+. ....-|||.|.+.+++....+.++|+.|-
T Consensus 5 ~p~~~~~l~V~nL~~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 77 (83)
T d2cqca1 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELD 77 (83)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTS--CEEEEEEEECSSSS--SEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCcccccccccccc--ccccceEEEECCHHHHHHHHHHcCCCEEC
Confidence 366778899999999999999999998752 45444333211111 11234999999999999999999998874
No 19
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.31 E-value=0.00064 Score=54.07 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=59.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHh-cCCeeEeC
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELL-NGHVFVNE 81 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~f-dG~vFvDs 81 (523)
...+..+|.|++||+.+||+++.+.+... |.|....... +.......-.-|||.|.+.++....++.+ +|..|.
T Consensus 4 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~--G~i~~v~i~~-~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~-- 78 (94)
T d2cpha1 4 KKQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPK-KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY-- 78 (94)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCC-CCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCceEEEEEe-ccccCCCcccEEEEEECCHHHHHHHHHHccCCcEEC--
Confidence 34566889999999999999999999875 3565444322 21111112346999999999999998887 776653
Q ss_pred CCCeeeeEEEeccC
Q 009879 82 KGAQFKAIVEYAPS 95 (523)
Q Consensus 82 KGne~~A~VEfAPY 95 (523)
| .+-.|+||--
T Consensus 79 -G--r~l~V~~A~~ 89 (94)
T d2cpha1 79 -G--RRLVLEWADS 89 (94)
T ss_dssp -S--CBCEEEECCC
T ss_pred -C--EEEEEEEcCC
Confidence 2 2567888853
No 20
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.31 E-value=0.00039 Score=53.80 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=56.6
Q ss_pred EEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCccee--EEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009879 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSR--AYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySR--AYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
|-|++||+++|++++.+.+... |.|.....+.-+. ......|| |||.|.+.+++...++.++|+.|.+ ..
T Consensus 1 LfV~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~-~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g-----~~ 72 (85)
T d2cpfa1 1 LFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKN-KAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-----HK 72 (85)
T ss_dssp EEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEEC-TTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-----EE
T ss_pred CEEcCCCCCCCHHHHHHHHHHh--CCccccceecccc-cccccccceEEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 5799999999999999999875 3455444332222 12233455 9999999999999999999998732 25
Q ss_pred eEEEecc
Q 009879 88 AIVEYAP 94 (523)
Q Consensus 88 A~VEfAP 94 (523)
-.|++|.
T Consensus 73 i~V~~a~ 79 (85)
T d2cpfa1 73 LEVRISE 79 (85)
T ss_dssp CEEECSS
T ss_pred EEEEECC
Confidence 6788874
No 21
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.30 E-value=0.00066 Score=52.12 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=56.7
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeee
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA 88 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A 88 (523)
||.|.+|||.+||+++.+.+... +.|........+ .. . ...-|||.|.+.+++....+.++|+.|.+ ..-
T Consensus 2 rl~V~nLp~~~~~~~l~~~F~~~--G~v~~~~i~~~~-~g-~-~~g~afV~f~~~~~A~~Ai~~l~g~~l~g-----~~l 71 (78)
T d1no8a_ 2 KLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDR-SG-R-SLGTADVHFERKADALKAMKQYNGVPLDG-----RPM 71 (78)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHH--SCEEEEEESCSS-CC-C-SCCEEEEEESCHHHHHHHHHHHTTCEETT-----EEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHh--CCCeEEEEEEee-cc-c-cceeEEEEECCHHHHHHHHHHhCCCEECC-----EEE
Confidence 79999999999999999999875 345554443332 11 1 23469999999999999999999998743 245
Q ss_pred EEEecc
Q 009879 89 IVEYAP 94 (523)
Q Consensus 89 ~VEfAP 94 (523)
.|++|.
T Consensus 72 ~V~~a~ 77 (78)
T d1no8a_ 72 NIQLVT 77 (78)
T ss_dssp EEEEEC
T ss_pred EEEEee
Confidence 667664
No 22
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.29 E-value=0.00086 Score=52.66 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 1 mk~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
|....+...|-|.+||+++||+++.+.+... |.|.-...+.-+... -.-|||.|.+.+++..-.+.++|+.|.+
T Consensus 2 m~d~~~~~tl~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g 75 (90)
T d2cqia1 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTSN----DPYCFVEFYEHRDAAAALAAMNGRKILG 75 (90)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCSS----CCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCceeeeeecccCcc----ceeeEEEECCHHHHHHHHHHcCCCEECC
Confidence 5666677789999999999999999998875 345444443322221 2359999999999999999999998743
Q ss_pred CCCCeeeeEEEec
Q 009879 81 EKGAQFKAIVEYA 93 (523)
Q Consensus 81 sKGne~~A~VEfA 93 (523)
..-.|.||
T Consensus 76 -----~~i~v~~a 83 (90)
T d2cqia1 76 -----KEVKVNWA 83 (90)
T ss_dssp -----EEEEEEEC
T ss_pred -----EEEEEEEc
Confidence 25667776
No 23
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.28 E-value=0.00017 Score=58.10 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=57.6
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeee
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA 88 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A 88 (523)
+|.|++||+.+||+++.+.++.+ |.|........+.+.+. -.-|||.|.+.+++....+.++|+.|.+. ..
T Consensus 10 tl~V~nLp~~~te~~l~~~f~~~--G~i~~v~i~~~~~tg~~--~g~afV~f~~~~~a~~ai~~l~~~~~~g~-----~i 80 (104)
T d1p1ta_ 10 SVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKP--KGYGFCEYQDQETALSAMRNLNGREFSGR-----AL 80 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEE--EEEEEEECSCHHHHHHHHHHSSSBSCSSS-----CB
T ss_pred EEEEECCCCcCCHHHHHHhhhcc--ccccccccccccceecc--CCceEEEECCHHHHHHHHHHcCCCEECCE-----EE
Confidence 58999999999999999999875 34555444433332211 12399999999999999999999988542 45
Q ss_pred EEEeccC
Q 009879 89 IVEYAPS 95 (523)
Q Consensus 89 ~VEfAPY 95 (523)
.|++|.-
T Consensus 81 ~V~~a~~ 87 (104)
T d1p1ta_ 81 RVDNAAS 87 (104)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 7888743
No 24
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.27 E-value=0.00053 Score=55.31 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=56.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcce--eEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYS--RAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~yS--RAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+..+|.|.+||+.+||+++.+.+...-. -+.+ ..+.-+ ..-.+ -|||.|.+.+++..-++.++|+.|-+
T Consensus 16 p~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~~-~~~~~~----~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-- 87 (102)
T d2cpza1 16 PEGANLFIYHLPQEFGDQDLLQMFMPFGN-VVSA-KVFIDK----QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-- 87 (102)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSC-CSEE-EEEECS----SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhcc-cccc-ceeeec----ccCCCccceEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 45689999999999999999999987532 1222 222111 11133 49999999999999999999998843
Q ss_pred CCeeeeEEEec
Q 009879 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
-.-.|+||
T Consensus 88 ---~~i~V~~a 95 (102)
T d2cpza1 88 ---KRLKVQLK 95 (102)
T ss_dssp ---EECEEECC
T ss_pred ---EEEEEEEe
Confidence 24567776
No 25
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.26 E-value=0.00096 Score=53.82 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=62.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE-eCCCC
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV-NEKGA 84 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv-DsKGn 84 (523)
+...|.|++||+.+||+++.+.+... +.|....+.+.+ .-|||.|.+.++....++.+++..+. +.
T Consensus 14 ps~~l~v~nlp~~~te~~l~~~F~~f--G~I~~~~~~~~k--------~~AfV~f~~~e~A~~ai~~~~~~~~~~~g--- 80 (104)
T d1wexa_ 14 VSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPFK--------RQALVEFENIDSAKECVTFAADVPVYIAG--- 80 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETTT--------TEEEEEESSHHHHHHHHHHHHHSCCBSSS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHhhhhc--ccceEEEEEecc--------eeEEEEeCCHHHHHHHHHHHcCCCcEEee---
Confidence 34567899999999999999999875 356666554321 23999999999999999988765432 22
Q ss_pred eeeeEEEeccCCCCCCCC
Q 009879 85 QFKAIVEYAPSQRVPKPF 102 (523)
Q Consensus 85 e~~A~VEfAPYQKvPk~k 102 (523)
.+..|.||-++++....
T Consensus 81 -~~l~v~~s~~~~~~~~~ 97 (104)
T d1wexa_ 81 -QQAFFNYSTSKRITRPG 97 (104)
T ss_dssp -SBCEEEECSSSSCCCSC
T ss_pred -EEEEEEEcCCCccCCCC
Confidence 26889999988877654
No 26
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.25 E-value=0.00061 Score=55.39 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=63.6
Q ss_pred CCCceEEEec--CCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 5 LQRTKVVIRH--LPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 5 ~~r~KVVIRr--LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+...++|.+ ||+++||+++.+.+.+. |.+....+.+++ ..|||.|.+.++....++.++|+.+.|..
T Consensus 16 ~pt~~l~V~ng~L~~~vte~~L~~~F~~~--G~i~~i~~~~~k--------~~aFV~f~~~e~A~~A~~~lng~~i~~~~ 85 (101)
T d2cq2a1 16 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNK--------PYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (101)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTTC--------SCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCceEEEECCCCCCCCCHHHHHHHHHhh--CcccEEeeccCc--------cEEEEEECCHHHHHHHHHHhCCCCCCCCC
Confidence 3456788877 99999999999999986 456666665543 36999999999999999999999999988
Q ss_pred CCeeeeEEEec
Q 009879 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
+.....-+.|+
T Consensus 86 ~~~i~~~~~~~ 96 (101)
T d2cq2a1 86 GQKITLYLNFV 96 (101)
T ss_dssp SCEEECEEEEE
T ss_pred CcEEEEEEEee
Confidence 86655555554
No 27
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.24 E-value=0.001 Score=53.93 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
|.....|.|++||+.+||+++.+.+..+ |.|......... ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 4 p~~~r~l~V~nLp~~~te~~l~~~F~~~--G~v~~i~~~~~~-----~~kG~afV~f~~~~~A~~Ai~~l~g~~~~g--- 73 (114)
T d2f9da1 4 PEVNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNTP-----ETRGTAYVVYEDIFDAKNACDHLSGFNVCN--- 73 (114)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECST-----TTTTEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhc--CCeEeecccccC-----CcCCeEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4455679999999999999999999875 456555443211 112359999999999999999999999853
Q ss_pred CeeeeEEEecc
Q 009879 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||.
T Consensus 74 --r~l~V~~a~ 82 (114)
T d2f9da1 74 --RYLVVLYYN 82 (114)
T ss_dssp --EECEEEECC
T ss_pred --EEEEEEEcC
Confidence 356788874
No 28
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.17 E-value=0.00038 Score=52.32 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=48.6
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
||-|.+||+++||+++.+.+...- .+.-...+..+.+. ....-|||.|.+.+++....+ ++|+.|-+
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~--~~~~~afV~F~~~~~a~~al~-~~~~~l~g 67 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFG--KVDDAMLMFDKTTN--RHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS--CCSEECCBCCTTCT--TSCCEEEEECSCHHHHHHHHH-CSSCCBTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhC--Ccceeeeeeecccc--ccCceeEEEECCHHHHHHHHh-cCCCEECC
Confidence 689999999999999999998752 33333333322222 223469999999999988876 89998743
No 29
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.16 E-value=0.0011 Score=52.47 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=59.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009879 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
....+...|.|.+||+.+|++++.+.+... +.|.-...+.-..+... -.-|||.|.+.+++....+.++|+.|.+-
T Consensus 4 ~~~~~~~tlfV~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~d~~tg~~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 79 (93)
T d1x5ua1 4 SERNQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVTGQH--QGYGFVEFLSEEDADYAIKIMDMIKLYGK 79 (93)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCSB--CSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CcCCCCCEEEEeCCCCcCCHHHHHHHHHHh--CCccccceeeccccccc--ccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence 345566789999999999999999999875 24543333222111111 12499999999999999999999988542
Q ss_pred CCCeeeeEEEec
Q 009879 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
.-.|++|
T Consensus 80 -----~l~V~~A 86 (93)
T d1x5ua1 80 -----PIRVNKA 86 (93)
T ss_dssp -----BCEEEET
T ss_pred -----EEEEEEc
Confidence 4567766
No 30
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.10 E-value=0.002 Score=51.71 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|.+||+.+|+++|.+.+... +.|.+..-. . -.-|||.|.+.+++..-++.|+|..|....-.
T Consensus 13 ~~~~~i~V~Nlp~~~~~~~L~~~F~~~--G~v~~~~i~-----~----~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~ 81 (98)
T d1wg4a_ 13 RSDFRVLVSGLPPSGSWQDLKDHMREA--GDVCYADVQ-----K----DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGE 81 (98)
T ss_dssp SCSCEEEEECCCSSCCHHHHHHHHTTS--SCEEEEEEE-----T----TTEEEEEESSHHHHHHHHHHHSSEEEECTTSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhh--ccccccccc-----c----cceEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 345689999999999999999999764 345444321 1 14799999999999999999999999877654
Q ss_pred ee
Q 009879 85 QF 86 (523)
Q Consensus 85 e~ 86 (523)
..
T Consensus 82 v~ 83 (98)
T d1wg4a_ 82 TS 83 (98)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 31
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}
Probab=97.07 E-value=0.00096 Score=55.98 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCccee--EEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSR--AYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySR--AYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
....+|.|.+||+.+||+++.+.+... |.|.....+.-+.+. .+| |||.|.+.+++..-++.++|+.|-+
T Consensus 40 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~t~----~~rg~afV~f~~~~~A~~Ai~~lng~~~~g-- 111 (139)
T d1u6fa1 40 DVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRETR----QSRGYGFVKFQSGSSAQQAIAGLNGFNILN-- 111 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTTT----EEEEEEEEEESSHHHHHHHHHHTTTEECSS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh--ccccccccccccccc----cccceeeEEECCHHHHHHHHHHhCCCEECC--
Confidence 344689999999999999999998875 345444433222211 244 9999999999999999999998842
Q ss_pred CCeeeeEEEecc
Q 009879 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
..-.|+||-
T Consensus 112 ---r~l~V~~a~ 120 (139)
T d1u6fa1 112 ---KRLKVALAA 120 (139)
T ss_dssp ---CEEEEEESS
T ss_pred ---EEEEEEEcC
Confidence 357788874
No 32
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.06 E-value=0.0013 Score=51.37 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=61.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
.||-|.+||+.+||+++.+.+... |.|.-...+..+.+.+ .-.-|||.|.+++++...++.++|+.|.+. .
T Consensus 2 ~rlfV~nlp~~~te~~l~~~F~~~--G~v~~v~i~~d~~tg~--~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~-----~ 72 (85)
T d2u2fa_ 2 HKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGL--SKGYAFCEYVDINVTDQAIAGLNGMQLGDK-----K 72 (85)
T ss_dssp CCEEEETCCSSCCSHHHHHHHTSS--SCEEEEEEECCCSSSC--CCCEEEEEESSSHHHHHHHHTSSSCCCSSS-----C
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc--CccceEEeeccccccc--cceeEEEEECCHHHHHHHHHHhCCCEECCE-----E
Confidence 379999999999999999999874 3465555554333221 234799999999999999999999988653 4
Q ss_pred eEEEeccC
Q 009879 88 AIVEYAPS 95 (523)
Q Consensus 88 A~VEfAPY 95 (523)
..|++|..
T Consensus 73 l~V~~A~~ 80 (85)
T d2u2fa_ 73 LLVQRASV 80 (85)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 78888864
No 33
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.02 E-value=0.00092 Score=52.31 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=52.7
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
||.|.+||+++|++++.+.+... |.|....... ..-|||.|.+.+++..-++.++|..|.+....
T Consensus 2 rvfV~nlp~~~~~~~l~~~F~~~--G~v~~~~i~~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~ 66 (87)
T d3begb1 2 RVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYR---------DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 66 (87)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECT---------TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred eEEEECCCCcCCHHHHHHHHhhh--cccccccccc---------cceeeEEeCCHHHHHHHHHHhCCCEECCcEeE
Confidence 79999999999999999999875 3465443221 13599999999999999999999999776543
No 34
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.98 E-value=0.0024 Score=50.92 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=57.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+.+.|.|++||+.+||+++.+.+... + +.....+.-+... ...-.-|||.|.+.+++.... .++++.|.+
T Consensus 12 ~~p~~~v~V~nLp~~~te~~l~~~f~~~--g-~~~~~~~~~~~~~-g~~~g~afV~f~~~e~a~~~~-~~~~~~~~g--- 83 (104)
T d1wi8a_ 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNP-ERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--- 83 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCT-TSBCSCEEEEESSHHHHHHHH-GGGTCEETT---
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHh--c-cccceeeeeeccC-CCcceeeeEEECCHHHHHHHH-HcCCCEECC---
Confidence 3456899999999999999999999874 3 3333332211111 111236999999999998766 589998733
Q ss_pred CeeeeEEEeccCC
Q 009879 84 AQFKAIVEYAPSQ 96 (523)
Q Consensus 84 ne~~A~VEfAPYQ 96 (523)
....|++|--+
T Consensus 84 --r~l~V~~a~~~ 94 (104)
T d1wi8a_ 84 --KRIRVDVADQA 94 (104)
T ss_dssp --EECEEEECCCC
T ss_pred --EEEEEEECCCC
Confidence 36688887543
No 35
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.98 E-value=0.00041 Score=54.71 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=57.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
|...|.|.+||+.+|++++.+.|...+. |.|....+... .....-|||.|.+.+++......++|+.|.+
T Consensus 2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~-----~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g--- 73 (91)
T d1nu4a_ 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-----LKMRGQAFVIFKEVSSATNALRSMQGFPFYD--- 73 (91)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-----HHHTTCEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeee-----ccCCCceEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4578999999999999999887755442 45655443211 0112359999999999999999999988753
Q ss_pred CeeeeEEEec
Q 009879 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
..-.|+||
T Consensus 74 --~~l~v~~a 81 (91)
T d1nu4a_ 74 --KPMRIQYA 81 (91)
T ss_dssp --EECEEEEC
T ss_pred --EEEEEEEe
Confidence 35677776
No 36
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.94 E-value=0.0023 Score=48.92 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=54.7
Q ss_pred EEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeeeE
Q 009879 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAI 89 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~ 89 (523)
|.|++||+.+|++++.+.+.++- +.... + ++ ...-|||.|.+.+++..-.+.++|+.|.+ ..-.
T Consensus 1 i~V~nLp~~~t~~~l~~~F~~~g---~~~~~-~-~~------~~g~afv~f~~~~~A~~Ai~~ln~~~~~g-----~~l~ 64 (75)
T d1wi6a1 1 ILIRGLPGDVTNQEVHDLLSDYE---LKYCF-V-DK------YKGTAFVTLLNGEQAEAAINTFHQSRLRE-----RELS 64 (75)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC---EEEEE-E-ET------TTTEEEEEESSHHHHHHHHHHHTTEESSS-----CEEE
T ss_pred CEEeCCCCcCCHHHHHHHHhccc---cccee-e-cc------cceeEEEEECCHHHHHHHHHHhCCccCCC-----CEEE
Confidence 68999999999999999998752 22111 1 11 12359999999999999999999998843 2577
Q ss_pred EEeccCCC
Q 009879 90 VEYAPSQR 97 (523)
Q Consensus 90 VEfAPYQK 97 (523)
|+|||-.-
T Consensus 65 V~~a~~d~ 72 (75)
T d1wi6a1 65 VQLQPTDA 72 (75)
T ss_dssp EEECCSTT
T ss_pred EEEeCCCC
Confidence 89887543
No 37
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.93 E-value=0.0028 Score=49.32 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=60.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..|...|.|++||+.+|++++++.+.+. +.|....+.+.+ .-|||.|.+.++.....+.+.++.+.- .|
T Consensus 5 ~~Ps~~l~V~nLp~~~t~~~L~~~f~~~--G~i~~v~~~~~~--------~~afV~f~~~e~A~~a~~~~~~~~~~~-~g 73 (88)
T d2cq1a1 5 GAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKGK--------NQAFLELATEEAAITMVNYYSAVTPHL-RN 73 (88)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETTT--------TEEEEEESSHHHHHHHHHHHHHSCCEE-TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc--cccccccccccc--------eEEEEEeCCHHHHHHHHHHHccCCCcc-CC
Confidence 3456678899999999999999999875 356666665432 249999999999999988876543221 22
Q ss_pred CeeeeEEEeccCCCC
Q 009879 84 AQFKAIVEYAPSQRV 98 (523)
Q Consensus 84 ne~~A~VEfAPYQKv 98 (523)
.+..|+||-++.+
T Consensus 74 --~~l~v~~sk~~~l 86 (88)
T d2cq1a1 74 --QPIYIQYSNHKEL 86 (88)
T ss_dssp --EECEEEECSCSSC
T ss_pred --CEEEEEECCCCCC
Confidence 3678899977653
No 38
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.90 E-value=0.002 Score=51.57 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+.++|.|.+||+.+||+++.+.+... |.|.....+... ......-|||.|.+.++...-++.++|..|.+...
T Consensus 15 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~ 89 (101)
T d1x5oa1 15 EQDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDS---SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 89 (101)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECS---SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhhc--ccccceeeeccc---ccccccceeEEeCCHHHHHHHHHHhCCCEECCcCC
Confidence 3456899999999999999999999875 345443333221 12234569999999999999999999999876544
No 39
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.90 E-value=0.0014 Score=52.99 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=65.2
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 1 mk~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
|-.+.+-+.|.|++||..+||+++.+.+..+- .|.-...+..+ .-.-|||.|.+.+++..-++.++|+.|.+
T Consensus 1 ~~~~s~~~~v~V~NL~~~vte~~L~~~F~~~G--~i~~~~i~~~~------~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~ 72 (108)
T d2adba1 1 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKN------NQFQALLQYADPVSAQHAKLSLDGQNIYN 72 (108)
T ss_dssp SCCCCCEEEEESCSCCSTTHHHHHHHHHTTTS--CEEEEEEEEET------TEEEEEEEESCHHHHHHHHHHHHSCCSST
T ss_pred CCCCCCeEEEEEeCcCCCCCHHHHHHHHccCC--cEEEEEEEeeC------CCCeEEEEECCHHHHHHHHHHHCCCEecc
Confidence 77888999999999999999999999999853 34322222221 12359999999999999999999998854
Q ss_pred CCCCeeeeEEEeccCCCC
Q 009879 81 EKGAQFKAIVEYAPSQRV 98 (523)
Q Consensus 81 sKGne~~A~VEfAPYQKv 98 (523)
. .....|.|+-.+.+
T Consensus 73 ~---~~~l~v~~s~~~~~ 87 (108)
T d2adba1 73 A---CCTLRIDFSKLTSL 87 (108)
T ss_dssp T---CCCCEEEECSSCSC
T ss_pred C---CcEEEEEecCCccc
Confidence 3 23566788755543
No 40
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.90 E-value=0.0029 Score=49.10 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=55.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
...|.|.+||+..||+++.+.+...- .+.....+.++- ..-|||.|.+.++...-...++|+.+.|. .
T Consensus 10 s~tL~V~NLp~~~te~~l~~~F~~~G--~v~~~~~~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~i~~g----~ 77 (88)
T d2adca2 10 SATLHLSNIPPSVSEEDLKVLFSSNG--GVVKGFKFFQKD------RKMALIQMGSVEEAVQALIDLHNHDLGEN----H 77 (88)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTS--CCEEEEEECSSS------TTCEEEEESSHHHHHHHHHHHTTCBSSSS----C
T ss_pred CCEEEEECCCCCCCHHHHHHHhhccC--CEEEEEEeeecc------cceeEEEECCHHHHHHHHHhccCCEecCC----C
Confidence 45688999999999999999998753 333333444432 12499999999999999999999876543 2
Q ss_pred eeEEEec
Q 009879 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
.-.|+||
T Consensus 78 ~l~v~~s 84 (88)
T d2adca2 78 HLRVSFS 84 (88)
T ss_dssp BCEEEEC
T ss_pred EEEEEeC
Confidence 4567776
No 41
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.90 E-value=0.0031 Score=50.33 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=62.7
Q ss_pred CceEEEecCCCC-CCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 7 RTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 7 r~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...|.|.+|||. +||+++.+.+..+ |.|.....+..+ -.-|||.|.+.+++...++.++|..|.+.
T Consensus 2 ~~~l~V~nL~p~~~te~~L~~~F~~f--G~I~~v~i~~~~-------kg~afV~f~~~~~A~~ai~~lng~~l~g~---- 68 (109)
T d2adca1 2 NSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHGK---- 68 (109)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHH--TCEEEEEECCTT-------SCCEEEEESCHHHHHHHHHHHTTCBCSSS----
T ss_pred CCEEEEeCCCcccCCHHHHHHHHhhc--cccceEEEEecc-------cceEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 367999999885 9999999999875 467666665432 12599999999999999999999998653
Q ss_pred eeeEEEeccCCCCCC
Q 009879 86 FKAIVEYAPSQRVPK 100 (523)
Q Consensus 86 ~~A~VEfAPYQKvPk 100 (523)
...|+||....+..
T Consensus 69 -~l~v~~s~~~~~~~ 82 (109)
T d2adca1 69 -PIRITLSKHQNVQL 82 (109)
T ss_dssp -BCEEECCSCCCCCC
T ss_pred -EEEEEECCCCCCCC
Confidence 56899987665443
No 42
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.88 E-value=0.00084 Score=50.31 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=48.7
Q ss_pred EEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
|-|.+||+.+||+++.+.+... +.+.-.....-+... ....-|||.|.+.+++....+.++|..|..
T Consensus 1 lyV~nLp~~~te~~l~~~F~~~--G~v~~~~~~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~lng~~~~G 67 (72)
T d1x4ea1 1 LYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTN--KCKGYGFVDFDSPSAAQKAVTALKASGVQA 67 (72)
T ss_dssp EEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSC--SCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CEEeCCCCcCCHHHHHHHHhhh--ccccccccccccccc--cccceeEEEECCHHHHHHHHHHhCCCEECC
Confidence 5799999999999999998864 234332222222211 223469999999999999999999988754
No 43
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.84 E-value=0.0017 Score=51.00 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|++||+..|++++.+.+.++- -.+.... ....-|||.|.+.++...-++.++++.|.+
T Consensus 3 s~s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~~----------~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G---- 67 (88)
T d1wg1a_ 3 SGSSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVD----------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---- 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEEE----------GGGTEEEECCSCHHHHHHHHHHHTTEEETT----
T ss_pred CCCCEEEEeCCCCccChHHHHHHHHhcC-ceeeeee----------ccCCceEEEECCHHHHHHHHHHhCCCEECC----
Confidence 3457899999999999999999998752 1221111 012359999999999999999999998732
Q ss_pred eeeeEEEeccCCCC
Q 009879 85 QFKAIVEYAPSQRV 98 (523)
Q Consensus 85 e~~A~VEfAPYQKv 98 (523)
..-.|+||+-...
T Consensus 68 -~~l~V~~a~~~~~ 80 (88)
T d1wg1a_ 68 -KDLIVQLQPTDAL 80 (88)
T ss_dssp -EEEEEEECCCCCC
T ss_pred -EEEEEEEcCCCCC
Confidence 3678899976543
No 44
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.82 E-value=0.0011 Score=51.88 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=56.5
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
...|.|.+||+.+|++++.+.+... +.|.....+..+.. ...-|||.|.+.+++..-++.++|..|.+ .
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~----~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 76 (89)
T d1cvja2 8 VGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDENG----SKGYGFVHFETQEAAERAIEKMNGMLLND-----R 76 (89)
T ss_dssp TTEEEEESCCSSCCHHHHHHHHHTT--SCEEEEEECCBTTB----CCSCEEEEESCHHHHHHHTTSSSEEEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEEeecCC----CcceeEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 3569999999999999999999875 34554443322211 12359999999999999999999988733 2
Q ss_pred eeEEEec
Q 009879 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
.-.|++|
T Consensus 77 ~i~V~~a 83 (89)
T d1cvja2 77 KVFVGRF 83 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 5667776
No 45
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.80 E-value=0.004 Score=50.04 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=61.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
..+||-|.+||+.+||+++.+.+... +.|.....+..+.+.+. -.-|||.|.+.+++...++.+++ .| + |
T Consensus 9 ~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~~--kg~afV~f~~~~~A~~Ai~~~~~-~l-~--G-- 78 (103)
T d2cqda1 9 TFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKS--RGYGFVTMADRAAAERACKDPNP-II-D--G-- 78 (103)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCC--CSEEEEEESSHHHHHHHHTCSSC-EE-T--T--
T ss_pred CCcEEEEeCCCCcCcHHHHHHHHhhc--ccccceecccccccccc--CCeEEEEECCHHHHHHHHHHCCC-cC-C--C--
Confidence 45789999999999999999999864 35665555544433221 22499999999999999988875 43 3 3
Q ss_pred eeeEEEeccCCCCCC
Q 009879 86 FKAIVEYAPSQRVPK 100 (523)
Q Consensus 86 ~~A~VEfAPYQKvPk 100 (523)
....|++|.....|+
T Consensus 79 r~l~V~~a~~~~~pr 93 (103)
T d2cqda1 79 RKANVNLAYLGAKPR 93 (103)
T ss_dssp EECEEEESTTTCCCC
T ss_pred EEEEEEEcCCCCCCC
Confidence 356788887655554
No 46
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.78 E-value=0.0019 Score=50.61 Aligned_cols=86 Identities=9% Similarity=0.019 Sum_probs=57.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|.+||++.||+++.+.+..+ +.+........+... ..-.-|||.|.+.+++...++.+++..+.+..-
T Consensus 5 ~~~~~tlfV~nLp~~~te~~l~~~f~~~--G~v~~~~~~~~~~~~--~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 80 (98)
T d1x4ha1 5 VTEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTE--HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 80 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSC--CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCCEEEEcCCCCcCCHHHHHHHHhcc--ccceeeeeccccccc--cccceEEEEEcCHHHHHHHHHHcccccccCCcE
Confidence 4456789999999999999999999875 344433333332221 112359999999999999999988655433210
Q ss_pred -CeeeeEEEec
Q 009879 84 -AQFKAIVEYA 93 (523)
Q Consensus 84 -ne~~A~VEfA 93 (523)
+-....|++|
T Consensus 81 ~~gr~l~v~~a 91 (98)
T d1x4ha1 81 LDGRQLKVDLA 91 (98)
T ss_dssp SSSCEEEEECC
T ss_pred ECCEEEEEEEC
Confidence 0114667776
No 47
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.77 E-value=0.0024 Score=50.30 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=56.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEE-------EeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWF-------CFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH 76 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwf-------yFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~ 76 (523)
..+...|.|.+||+.+||++|++.+...- .|... .+..-+... .....-|||.|.+.+++...++.++|+
T Consensus 5 ~~~~~~i~V~nLp~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~~d~~~-~~~~g~afV~f~~~~~a~~Ai~~l~g~ 81 (101)
T d2cpea1 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKET-GKPKGDATVSYEDPPTAKAAVEWFDGK 81 (101)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTT-CSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHHCc--eEEEeeecccceeEEeecccc-ccccceeeEEecCHHHHHHHHHHhCCC
Confidence 34678999999999999999999987642 12111 111111111 112235999999999999999999999
Q ss_pred eeEeCCCCeeeeEEEec
Q 009879 77 VFVNEKGAQFKAIVEYA 93 (523)
Q Consensus 77 vFvDsKGne~~A~VEfA 93 (523)
.|. | ..-.|++|
T Consensus 82 ~~~---g--r~i~V~~a 93 (101)
T d2cpea1 82 DFQ---G--SKLKVSLA 93 (101)
T ss_dssp EET---T--EECEEECS
T ss_pred EEC---C--EEEEEEEc
Confidence 883 2 35667776
No 48
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.76 E-value=0.0011 Score=52.22 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=50.8
Q ss_pred CCceEEEecCCCCCCHHHHHH---HhcccCCCceeEEEeeCCCCCCCC-CcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009879 6 QRTKVVIRHLPPSLSQNDLLA---LFRDHFNDRYNWFCFRPGKSSYKH-QRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e---qL~p~~~gkvdwfyFVpGK~S~Kp-~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
++..|-|.+|||.+|+++++. .++.. |.|.......-+..... ....-|||.|.+.++...-++.++|+.|.
T Consensus 7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~--G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~ 82 (89)
T d2cpia1 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 82 (89)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ecCEEEEECCCCccCHHHHHHHHHHhccc--CCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEEC
Confidence 456788999999999999943 34432 45655444333222221 22346999999999999999999999874
No 49
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.73 E-value=0.0021 Score=49.00 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
||-|.+||+++||+++.+.+... |.|.......-+.+.+.. .-|||.|.+.+++..-.+ .+++.|
T Consensus 1 klfV~nl~~~~te~~l~~~F~~~--G~i~~~~i~~d~~t~~~k--g~afV~f~~~~~a~~Al~-~~~~~l 65 (75)
T d1hd0a_ 1 KMFIGGLSWDTTKKDLKDYFSKF--GEVVDCTLKLDPITGRSR--GFGFVLFKESESVDKVMD-QKEHKL 65 (75)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCBTTTTBCC--SEEEEEESSHHHHHHHHH-TCCCCB
T ss_pred CEEEeCCCCcCCHHHHHHHHHhh--ccccccccccCCCCCCcC--ceEEEEECCHHHHHHHHh-cCCCEE
Confidence 78999999999999999999874 345544433222222222 349999999999998886 677765
No 50
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.71 E-value=0.0032 Score=49.87 Aligned_cols=80 Identities=9% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+.....+|.|++||+++||+++.+.+... |.|....-..-.... ..-.-|||.|.+.+++....+. ++ ++|.
T Consensus 4 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg--~srG~aFV~f~~~~~a~~al~~--~~-~l~G- 75 (90)
T d2cqga1 4 AVQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTG--HSKGFGFVRFTEYETQVKVMSQ--RH-MIDG- 75 (90)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHHHS--CE-EETT-
T ss_pred CCcCCCeEEEECCCCCCCHHHHHHHHHhh--cccceeeeccCCCCc--ccCCEEEEEECCHHHHHHHHhc--CC-ccCC-
Confidence 55677899999999999999999999975 345444333221111 1123599999999999888763 33 4443
Q ss_pred CCeeeeEEEec
Q 009879 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|.+|
T Consensus 76 ---r~i~v~~a 83 (90)
T d2cqga1 76 ---RWCDCKLP 83 (90)
T ss_dssp ---EEEEEECC
T ss_pred ---EEeEEEeC
Confidence 24566655
No 51
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.61 E-value=0.0047 Score=49.88 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=50.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
..|-|++||+.+||+++.+.+... |.|.....+..+.+.+.- .-|||.|.+.+++..-.+ ++|..|.
T Consensus 19 ~tifV~nL~~~~te~~l~~~F~~~--G~V~~v~i~~d~~tg~~k--G~afV~F~~~e~a~~A~~-l~g~~~~ 85 (101)
T d2cq4a1 19 RTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSK--GIAYVEFCEIQSVPLAIG-LTGQRLL 85 (101)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCC--CCEEEEESCGGGHHHHHH-HTTEEET
T ss_pred CEEEEECCCCCCCHHHHHHHHcCC--CeEEEEEeeecCCCcccc--ceEEEEECCHHHHHHHHH-HCCCEEC
Confidence 469999999999999999999874 456555554433322222 249999999999998874 9999873
No 52
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.57 E-value=0.0035 Score=47.91 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=48.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+-|.|++||+++|++++.+.+... |.|........+... ..-|||.|.+.+++.... .++++.|
T Consensus 1 Ttv~V~nlp~~~t~~~l~~~F~~~--G~I~~v~~~~~~~~~----~~~afV~F~~~~~a~~Al-~~~~~~i 64 (75)
T d2ghpa2 1 TTVLVKNLPKSYNQNKVYKYFKHC--GPIIHVDVADSLKKN----FRFARIEFARYDGALAAI-TKTHKVV 64 (75)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGG--SCEEEEEEEECTTSS----SEEEEEEESSHHHHHHHH-TTTTCEE
T ss_pred CEEEEECCCCCCCHHHHHHHHhcC--CceEEEEEEeecccc----ceEEEEEEcchHHhHHHH-HhcCcEE
Confidence 468999999999999999999875 456555544333221 247999999999998876 5788876
No 53
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.55 E-value=0.0061 Score=47.52 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=55.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
..|-|.+||+.+||+++.+.+...- .|.....+.-..+.+ + -.-|||.|.+.+++....+.++|+.|- | ..
T Consensus 6 ~tlfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~~~~-~-kg~afV~f~~~~~A~~ai~~l~~~~i~---g--~~ 76 (89)
T d2cqba1 6 RVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEK-H-RGFAFVEFELAEDAAAAIDNMNESELF---G--RT 76 (89)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTS--CCCCEECCCCSSSCC-C-SSEEEECCSSHHHHHHHHHHHTTEEET---T--EE
T ss_pred cEEEEeCCCCcCCHHHHHHHHhhCC--eEEeccccccccccc-c-cceeEEEECCHHHHHHHHHHcCCCEEC---C--EE
Confidence 5788999999999999999998642 343333322111111 1 124999999999999999999998773 2 25
Q ss_pred eEEEec
Q 009879 88 AIVEYA 93 (523)
Q Consensus 88 A~VEfA 93 (523)
..|+||
T Consensus 77 l~v~~a 82 (89)
T d2cqba1 77 IRVNLA 82 (89)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 778888
No 54
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.54 E-value=0.0037 Score=47.85 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=53.8
Q ss_pred EEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeeeE
Q 009879 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAI 89 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~ 89 (523)
|=|.+|||.+||+++.+.+... . .|.-...+.-..+. ..-.-|||.|.+++++....+.++|+.|- | ..-.
T Consensus 3 lfV~nL~~~~te~~l~~~F~~~-G-~i~~v~i~~d~~tg--~~~g~aFV~f~~~~~a~~ai~~l~g~~~~---g--r~i~ 73 (80)
T d1cvja1 3 LYVGDLHPDVTEAMLYEKFSPA-G-PILSIRVCRDMITR--RSLGYAYVNFQQPADAERALDTMNFDVIK---G--KPVR 73 (80)
T ss_dssp EEEESCCTTCCHHHHHHHHGGG-S-CEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHTTSTTCEET---T--EECE
T ss_pred EEEeCCCCcCCHHHHHHHHHHh-C-CEeEEEEEeccccc--CCCCceEEEECCHHHHHHHHHHcCCCEEC---C--EEEE
Confidence 6689999999999999999865 2 34333333222211 12347999999999999999999999873 2 2466
Q ss_pred EEec
Q 009879 90 VEYA 93 (523)
Q Consensus 90 VEfA 93 (523)
|+||
T Consensus 74 v~~a 77 (80)
T d1cvja1 74 IMWS 77 (80)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7776
No 55
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.54 E-value=0.0034 Score=48.80 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
++|-+..+|-|.+||+++||+++.+.+..+ |.+.......-..+.+ .-.-|||.|.+.+++....+ .+++.|
T Consensus 1 ~epe~~~~lfV~nlp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~--~kG~afV~f~~~~~a~~ai~-~~~~~i 72 (84)
T d1l3ka1 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPNTKR--SRGFGFVTYATVEEVDAAMN-ARPHKV 72 (84)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHH-TCSCEE
T ss_pred CCCCCCcEEEEECCCCCCCHHHHHHHHHhh--ccccceeecccccCCC--cccEEEEEEcCHHHHHHHHH-hCCCEE
Confidence 355666799999999999999999999875 3565555432222111 12459999999999988876 488776
No 56
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.53 E-value=0.0046 Score=49.27 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+.+.|.|.+||+.+||+++.+.+.+. |.|....+++.+ .-|||.|.+.++....++.++|..|.+
T Consensus 16 ~~~~~l~v~nL~~~~te~~L~~~F~~f--G~i~~v~i~~~k--------g~afV~f~~~~~A~~Ai~~l~~~~i~g---- 81 (96)
T d1x4ga1 16 PKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEK--------GYSFVRFSTHESAAHAIVSVNGTTIEG---- 81 (96)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETTT--------TEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHh--CCceEEEEEecc--------eEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 345789999999999999999999875 356666666542 359999999999999999999988732
Q ss_pred eeeeEEEec
Q 009879 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
....|+||
T Consensus 82 -~~l~v~~a 89 (96)
T d1x4ga1 82 -HVVKCYWG 89 (96)
T ss_dssp -EECEEECC
T ss_pred -EEEEEEEc
Confidence 34667775
No 57
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.49 E-value=0.0051 Score=47.46 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=52.3
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeee
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA 88 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A 88 (523)
.|-|++||+.+||+++.+.+...-. +....... + -.-|||.|.+.++...-...++|+.|.+ ..-
T Consensus 10 ~l~V~nLp~~~te~~l~~~F~~~g~--i~~~~~~~---~-----rg~afV~f~~~~~A~~Ai~~l~~~~i~g-----~~i 74 (86)
T d2cpda1 10 ILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKK---I-----RDYAFVHFSNREDAVEAMKALNGKVLDG-----SPI 74 (86)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEE---C-----SSEEEEEESSHHHHHHHHHHHSSEEETT-----EEE
T ss_pred EEEEcCCCCCCCHHHHHHhhcccce--eeeEEEcc---c-----cEEEEEEeCCHHHHHHHHHHcCCCEECC-----EEE
Confidence 5779999999999999999887532 22222211 1 1269999999999999999999988743 256
Q ss_pred EEEec
Q 009879 89 IVEYA 93 (523)
Q Consensus 89 ~VEfA 93 (523)
.|+||
T Consensus 75 ~V~~a 79 (86)
T d2cpda1 75 EVTLA 79 (86)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 78877
No 58
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.46 E-value=0.0054 Score=47.18 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=51.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCC-ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
...+.|.|++||++.||+++.+.+...-.- ...++.+.+. .....-|||.|.+.+++..-++.++++.+
T Consensus 7 p~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~-----g~~~G~afV~f~~~e~a~~Ai~~l~~~~l 76 (86)
T d2cqpa1 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK-----GMPTGEAMVAFESRDEATAAVIDLNDRPI 76 (86)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS-----SCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCC-----CCcceEEEEEEcCcHHHHHHHHHcCCCEE
Confidence 345779999999999999999999875321 1123333211 11234699999999999999999999987
No 59
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.45 E-value=0.0062 Score=48.03 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=55.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEE-EeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWF-CFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwf-yFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+...|.|.+||+.+|++++.+.+...-. ..+.+. ....|+. -.-|||.|.+.+++...++.++|+.|.+
T Consensus 16 ~ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~------~g~~fV~f~~~~~A~~Ai~~l~g~~~~g-- 87 (102)
T d2cpxa1 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM------RGQAFITFPNKEIAWQALHLVNGYKLYG-- 87 (102)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS------CSEEEEECSSHHHHHHHHHHSTTCBCSS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccc------cccceEEeccHHHHHHHHHHhCCCEECC--
Confidence 34578999999999999999998875421 111111 1222321 2358999999999999999999998832
Q ss_pred CCeeeeEEEec
Q 009879 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
.+-.|+||
T Consensus 88 ---~~l~V~~a 95 (102)
T d2cpxa1 88 ---KILVIEFG 95 (102)
T ss_dssp ---CBCEEEEC
T ss_pred ---EEEEEEeC
Confidence 25678887
No 60
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.45 E-value=0.005 Score=47.08 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=51.6
Q ss_pred EEEecCCCCCCHHHHHHHhcccCCCce-eEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeee
Q 009879 10 VVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA 88 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~~gkv-dwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A 88 (523)
|-|.+||+.+||+++.+.+...- .+ .....+.-..+.+ ...-|||.|.+.+++...++.++|..|.+ .+.
T Consensus 1 lfV~nLp~~~te~~l~~~F~~~G--~i~~~~~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~~~g~~~~g-----r~l 71 (83)
T d1x5ta1 1 IFIGNLDPEIDEKLLYDTFSAFG--VILQTPKIMRDPDTGN--SKGYAFINFASFDASDAAIEAMNGQYLCN-----RPI 71 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTS--CBSSCCEECCCTTTCS--CCSEEEEEBSSHHHHHHHHHTTTTCEETT-----EEC
T ss_pred CEEcCCCCcCcHHHHHHHHHHhC--ceeeeEEEEeeccccc--cCceEEEEECCHHHHHHHHHhCCCcEECC-----EEE
Confidence 56899999999999999998742 22 2111111111111 12349999999999999999999998732 256
Q ss_pred EEEecc
Q 009879 89 IVEYAP 94 (523)
Q Consensus 89 ~VEfAP 94 (523)
.|++|-
T Consensus 72 ~v~~a~ 77 (83)
T d1x5ta1 72 TVSYAF 77 (83)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 677763
No 61
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.42 E-value=0.0037 Score=50.05 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=50.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
.+.....|.||.||++.||+++.+.+...-...+.+.+-.. -....-|||.|.+.+++....+ ++++.|-+
T Consensus 11 ~~~~~~~v~v~nLp~~~te~dl~~~F~~~~~~~v~~~~~~~------g~~~G~afVeF~~~~~a~~Al~-~~~~~i~g 81 (102)
T d1weza_ 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD------GRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSS------SCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHhccCcceeeeEEecC------CcceEEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 34556789999999999999999988864222232222111 1234679999999999998765 78887654
No 62
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.39 E-value=0.0046 Score=47.54 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=52.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCC-ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe-eEeCCCCe
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-FVNEKGAQ 85 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v-FvDsKGne 85 (523)
-+|.|++||+.+||+++.+.+...-.- .+.+.. .-.-|||.|.+.++.....+.++|.. | + |
T Consensus 2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~-----------~rg~aFV~f~~~~~A~~Ai~~lng~~~~-~--G-- 65 (80)
T d2cqha1 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----------KSGYAFVDYPDQNWAIRAIETLSGKVEL-H--G-- 65 (80)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----------ETTEEEECCSCHHHHHHHHHHHTTTCEE-T--T--
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEec-----------ccceEEEEECCHHHHHHHHHHhCCCeEE-C--C--
Confidence 479999999999999999999874210 111111 01259999999999999999999964 4 2 2
Q ss_pred eeeEEEecc
Q 009879 86 FKAIVEYAP 94 (523)
Q Consensus 86 ~~A~VEfAP 94 (523)
.+-.|+||-
T Consensus 66 ~~i~V~~a~ 74 (80)
T d2cqha1 66 KIMEVDYSV 74 (80)
T ss_dssp EECEEEECC
T ss_pred EEEEEEEcC
Confidence 267788875
No 63
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.36 E-value=0.0034 Score=48.26 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=45.8
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 77 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v 77 (523)
||-|.+||+.+||+++.+.+... |.|.......-+.+.++. .-|||.|.+.+++....+. +++.
T Consensus 1 klfVgnLp~~~te~~l~~~F~~~--G~I~~v~i~~d~~t~~~r--G~~FV~f~~~~~a~~al~~-~~~~ 64 (75)
T d1x0fa1 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTNKRR--GFCFITFKEEEPVKKIMEK-KYHN 64 (75)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHH--SCEEEEECCCCTTTCCTT--CCEEEEESSSHHHHHHTTC-SSCC
T ss_pred CEEEcCCCCCCCHHHHHHHHHHh--CCcccccccccccccccc--cEEEEEECCHHHHHHHHhh-CCCE
Confidence 78999999999999999999975 456554443332222222 2399999999999888764 4443
No 64
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.28 E-value=0.0038 Score=47.98 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+||-|++||+.+||+++.+.+... |.|.-..-..-+.+.++ -.-|||.|.+.+++..-.+ .+++.+
T Consensus 1 cklfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~~--kG~aFV~f~~~~~a~~al~-~~~~~i 66 (77)
T d1uawa_ 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRS--RGFGFVTFMDQAGVDKVLA-QSRHEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCSSSC--SSEEEECCCCTTHHHHHHH-TTTCCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHh--CCcceeeeecccCCCCc--cceEEEEECCHHHHHHHHH-cCCCEE
Confidence 689999999999999999999875 23432233222222211 2459999999999998886 587766
No 65
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.28 E-value=0.015 Score=45.73 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=57.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
++||-|.+||+.+||+++.+.+...-. .+.-...+.-... ....-.-|||.|.+.++....++.+++..|.-. | .
T Consensus 1 n~rLyV~nLp~~~te~~l~~~f~~~g~-~i~~v~~~~~~~~-~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~-g--~ 75 (96)
T d2disa1 1 NCRLFIGGIPKMKKREEILEEIAKVTE-GVLDVIVYASAAD-KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW-G--H 75 (96)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHST-TEEEEECCSSSCT-TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT-T--B
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHhCC-cceEEEEeeeccc-cccCCCeEEEEEcCHHHHHHHHHHHcCCCeEEC-C--E
Confidence 579999999999999999999987643 2443333322111 111223599999999999999999987655432 2 2
Q ss_pred eeEEEec
Q 009879 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
...|+||
T Consensus 76 ~i~V~~A 82 (96)
T d2disa1 76 QIAVDWA 82 (96)
T ss_dssp CCEEEES
T ss_pred EEEEEEc
Confidence 5779998
No 66
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.19 E-value=0.01 Score=44.75 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=46.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
-||-|.+||+.+||+++.+.+..+ +.+.-.....- ......-.-|||.|.+.|+...... ++|+.|
T Consensus 3 r~lfV~nLp~~~te~~l~~~F~~~--G~i~~~~~~~~--~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l 68 (79)
T d1l3ka2 3 KKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTD--RGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTV 68 (79)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEEC--TTTCCEEEEEEEEESSHHHHHHHHH-CSCCEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHHh--ccccccccccC--CCCcccccEEEEEEcCHHHHHHHHH-hCCCEE
Confidence 489999999999999999999875 23332222111 1112223459999999988877774 799987
No 67
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=96.10 E-value=0.0046 Score=48.90 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+...|.|++||+++||+++.+.+...- .+... ...| ....-|||.|.+.+++..-++.++|+.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~te~~l~~~F~~~g--~v~~~-~~~~------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g--- 80 (96)
T d1fjca_ 13 VRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLV-SQDG------KSKGIAYIEFKSEADAEKNLEEKQGAEIDG--- 80 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEE--EECCE-EETT------EEEEEEEEEESSHHHHHHHHHHTTEEEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcc--cceee-eecC------ccccEEEEEeCCHHHHHHHHHHcCCCEECC---
Confidence 34567899999999999999999988642 22111 1122 112359999999999999999999988743
Q ss_pred CeeeeEEEecc
Q 009879 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 81 --r~i~V~~a~ 89 (96)
T d1fjca_ 81 --RSVSLYYTG 89 (96)
T ss_dssp --EEEEEEECS
T ss_pred --EEEEEEEeC
Confidence 366777764
No 68
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.04 E-value=0.0084 Score=46.50 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCceEEEecCCCCCCH-HHHHHHhcccCCCceeEEEeeCCCCCCCCCcce--eEEEEecCcccHHHHHHHhcCCeeEeC
Q 009879 5 LQRTKVVIRHLPPSLSQ-NDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYS--RAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTE-EeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~yS--RAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
.++.+|.|++||+.+|+ +++.+.+... |.|........+ +....+ -|||.|.+.+++....+ ++|+.|-+
T Consensus 2 ~e~~~l~V~nLp~~~t~ed~l~~~F~~~--G~i~~v~i~~~~---~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~g- 74 (86)
T d2ghpa3 2 LEGREIMIRNLSTELLDENLLRESFEGF--GSIEKINIPAGQ---KEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGN- 74 (86)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGG--SCEEEEECCSCC---C---CCCEEEEEEESSHHHHHHHGG-GTTEEETT-
T ss_pred CCCCEEEEECCCCCcccHHHHHHHHHhh--hhccceeeeccc---CCccccceeeeEEECCHHHHHHHHh-cCCCEECC-
Confidence 46789999999999975 5577777764 356554432211 122223 39999999999998885 89988732
Q ss_pred CCCeeeeEEEec
Q 009879 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
..-.|++|
T Consensus 75 ----r~l~V~~a 82 (86)
T d2ghpa3 75 ----REISVSLA 82 (86)
T ss_dssp ----EEEEEEEC
T ss_pred ----EEEEEEEc
Confidence 24566665
No 69
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.01 E-value=0.012 Score=47.02 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=48.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.......|-||+||.+.||+++.+.+...-. -+........ ... ....-|||.|.+++++....+ ++++.|
T Consensus 11 ~~~~~~~v~v~nLP~~~te~dI~~~F~~~g~-v~~~v~~~~~--~~~-~~kG~afV~F~~~e~a~~a~~-~~~~~i 81 (104)
T d1wg5a_ 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVD--FQG-RSTGEAFVQFASQEIAEKALK-KHKERI 81 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCE-EEEEEECCBC--SSS-CBCSEEEEEESSHHHHHHHHT-TTTCCS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEEEeC--CCC-CcceEEEEEeCCHHHHHHHHh-hCCCEE
Confidence 3445567999999999999999999987531 1121221111 111 223469999999999987664 788766
No 70
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.89 E-value=0.017 Score=43.93 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+|.....|.|.+|| +||+++.+.++.. |.|.-...... ...|||.|.+.++....++.++|..|.+.
T Consensus 1 ap~~~~ti~V~~~~--~te~~L~~~F~~~--G~I~~v~~~~~--------~~~afV~f~~~~~A~~Ai~~lng~~~~g~- 67 (79)
T d2bz2a1 1 APRKGNTLYVYGED--MTPTLLRGAFSPF--GNIIDLSMDPP--------RNCAFVTYEKMESADQAVAELNGTQVESV- 67 (79)
T ss_dssp CCCCCCEEEEECSS--CCHHHHHHHHSTT--CCCSCEEEETT--------TTEEEEECSSHHHHHHHHHHHTTCBCSSC-
T ss_pred CCCCCCEEEEECCC--CCHHHHHHHHhcc--CccceeeeccC--------CCEEEEEEcccHHHHHHHHHhCCCEECCE-
Confidence 57788899999996 8999999999875 23433333221 23799999999999999999999998442
Q ss_pred CCeeeeEEEec
Q 009879 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
.-.|+||
T Consensus 68 ----~l~V~~a 74 (79)
T d2bz2a1 68 ----QLKVNIA 74 (79)
T ss_dssp ----BCEEEEC
T ss_pred ----EEEEEEe
Confidence 4567777
No 71
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.88 E-value=0.013 Score=49.62 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=56.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
.....+|.|+.||+.+|++++.+.+... +.|.+...+...... ..-.-|||.|.+.+++..... .+++.|. |
T Consensus 94 ~~~~~~i~V~~lp~~~te~~L~~~f~~~--G~v~~~~i~~~~~~~--~~~g~~fV~f~~~e~A~~Al~-~~~~~~~---G 165 (183)
T d1u1qa_ 94 HLTVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDRGSG--KKRGFAFVTFDDHDSVDKIVI-QKYHTVN---G 165 (183)
T ss_dssp TCCCSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESCHHHHHHHHT-SSCEEET---T
T ss_pred ccccceeEEccCCCcCCHHHHhhhhccC--CceeeeeeecccccC--ccceeEEEEECCHHHHHHHHH-hCCCeEC---C
Confidence 3456789999999999999999999875 457666655432221 122359999999999998886 5776652 2
Q ss_pred CeeeeEEEec
Q 009879 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
....|.+|
T Consensus 166 --~~i~V~~A 173 (183)
T d1u1qa_ 166 --HNCEVRKA 173 (183)
T ss_dssp --EEEEEEEC
T ss_pred --EEEEEEec
Confidence 24556655
No 72
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.77 E-value=0.02 Score=45.61 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009879 5 LQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 5 ~~r~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
....+|.|.+|||. .+|+++.+.+..+ +.|.-..... .-|||.|.+.+++...++.++|+.|.+
T Consensus 13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~--G~i~~~~i~r----------g~aFV~f~~~~~A~~Ai~~lng~~~~g--- 77 (98)
T d1wf2a_ 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKY--GKIVGCSVHK----------GFAFVQYVNERNARAAVAGEDGRMIAG--- 77 (98)
T ss_dssp SCCCCEEEEEECTTTCCHHHHHHSSTTS--SCEEEEEEET----------EEEEEEESSHHHHHHHHHTTTTCEETT---
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHhhc--CCEEEEEEeC----------CeEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 34578999999875 5677788877764 3444333222 369999999999999999999998832
Q ss_pred CeeeeEEEeccC
Q 009879 84 AQFKAIVEYAPS 95 (523)
Q Consensus 84 ne~~A~VEfAPY 95 (523)
..-.|++|.-
T Consensus 78 --~~l~V~~a~~ 87 (98)
T d1wf2a_ 78 --QVLDINLAAE 87 (98)
T ss_dssp --EECEEEETTS
T ss_pred --EEEEEEECCC
Confidence 3678898853
No 73
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.70 E-value=0.012 Score=47.58 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=48.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
..+|-|++||+.+||+++.+.+..+ |.|....-..-+.+. ..-.-|||.|.+.+++....+ .+++.|
T Consensus 20 ~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~~~i~~d~~~~--~~kg~aFV~f~~~~~a~~al~-~~~~~l 86 (103)
T d1x4ba1 20 FRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASK--RSRGFGFVTFSSMAEVDAAMA-ARPHSI 86 (103)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTS--SCCSEEEEECSSHHHHHHHHT-SCSEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhh--CcccceeecccccCC--CccCeEEEEECCHHHHHHHHH-hCCCeE
Confidence 3689999999999999999999875 344433332222222 123459999999999988775 588876
No 74
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=95.51 E-value=0.0049 Score=48.68 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=54.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
.+.....|.|++||+.+||+++.+.+..+-. ..+...+-..|+ .-..|||.|.+.+++...++ ++|+.|.+
T Consensus 9 ~~~~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~------~kg~afv~F~~~e~a~~Al~-~~g~~~~g- 80 (91)
T d1fjeb1 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGT------NRKFGYVDFESAEDLEKALE-LTGLKVFG- 80 (91)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEET------TTTEEEEEESSHHHHHHHHH-GGGEEETT-
T ss_pred CCCCCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCC------ccEEeEEeeCCHHHHHHHHh-cCCcEECC-
Confidence 3556678999999999999999998876421 011111212222 12479999999999999986 89887653
Q ss_pred CCCeeeeEEEec
Q 009879 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
....|++|
T Consensus 81 ----~~i~V~~a 88 (91)
T d1fjeb1 81 ----NEIKLEKP 88 (91)
T ss_dssp ----EEEEEECC
T ss_pred ----EEEEEEec
Confidence 24556655
No 75
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.45 E-value=0.033 Score=45.30 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=54.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCc-ccHHHHHHHhcCCeeEeC
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKP-AGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~-Edl~~F~d~fdG~vFvDs 81 (523)
|.--+.+.|.+||+.+||+++.+.+.++ +.|.+..+..++ .-|||.|.++ +++...+..+++..+...
T Consensus 8 ~~g~~~~fvgnL~~~~tee~Lk~~F~~f--G~V~~v~i~~~k--------g~gfV~F~~~~~~A~~a~~~~~~~~l~~~ 76 (113)
T d1owxa_ 8 KIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGA--------KEGIILFKEKAKEALGKAKDANNGNLQLR 76 (113)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTC--------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhc--CChheEEEecCC--------ceEEEEecCcHHHHHHHHHHhcCCceecC
Confidence 4445667899999999999999999985 568888887663 4599999997 678888888888765543
No 76
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.41 E-value=0.016 Score=47.04 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=47.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009879 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
+.+..-|.||+||..+|++++.+.+...-. ..+....-..|. ...-|||.|.+.+++..-.+ ++|+.|-
T Consensus 15 ~~~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~------~~G~afVeF~~~e~a~~al~-~~~~~i~ 85 (112)
T d1wela1 15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGK------ATGEGFVEFRNEADYKAALC-RHKQYMG 85 (112)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSS------EEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCCeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccc------eeeEEEEEECCHHHHHHHHH-cCCCcCC
Confidence 455667999999999999999999976421 112111112221 24579999999999986664 7888753
No 77
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.40 E-value=0.026 Score=44.99 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCceEEEecCCC-CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHH--hcCCeeEeC
Q 009879 5 LQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAEL--LNGHVFVNE 81 (523)
Q Consensus 5 ~~r~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~--fdG~vFvDs 81 (523)
.+...|.|++||. .+||+++.+.+.+. |.|....+.+.+ .-|||.|.+.++.....+. .++..|.+.
T Consensus 16 ~~~~~l~v~nLp~~~~te~~l~~~F~~f--G~V~~v~~~~~k--------~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr 85 (99)
T d1x4fa1 16 ELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRMK--------SQAFIEMETREDAMAMVDHCLKKALWFQGR 85 (99)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETTT--------TEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCEEEEeCCcCCccCHHHHHhhhccc--cceeEEEEeecC--------CcEEEEecchHHHHHHHHHHhcCCceECCE
Confidence 3456799999997 59999999999875 467777776543 3699999999999988875 455555332
Q ss_pred CCCeeeeEEEec
Q 009879 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
...|+||
T Consensus 86 -----~l~V~~s 92 (99)
T d1x4fa1 86 -----CVKVDLS 92 (99)
T ss_dssp -----CCEEEEE
T ss_pred -----EEEEEEc
Confidence 4667777
No 78
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.38 E-value=0.02 Score=44.41 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=49.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
...|.|++||+.+|++++.+.+... |.+.-......+ .+. .-.-|||.|.+.+++....+ .++..|.+
T Consensus 6 ~rtvfV~nlp~~~te~~l~~~F~~~--G~v~~v~l~~~~--~~~-~kG~afV~f~~~e~a~~al~-~~~~~~~g 73 (85)
T d1zh5a2 6 NRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTL--HKA-FKGSIFVVFDSIESAKKFVE-TPGQKYKE 73 (85)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECT--TCC-EEEEEEEEESCHHHHHHHHT-CCCCEETT
T ss_pred cCEEEEECCCCCCCHHHHHHHHHHh--cccccceeeeec--cCC-cceEEEEEEcCHHHHHHHHH-HCCCEECC
Confidence 4579999999999999999999875 234433332221 111 23469999999999999885 58888744
No 79
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.93 E-value=0.014 Score=47.39 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=54.2
Q ss_pred CCceEEEecCCCCC-CHHHHHHHhcccC--CCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009879 6 QRTKVVIRHLPPSL-SQNDLLALFRDHF--NDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 6 ~r~KVVIRrLPP~L-TEEeF~eqL~p~~--~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
....|.|++|++.+ ++++..++|..++ -+.|.-+.+.++ ..+|+|.|.+.++....++.++|+.|.+.
T Consensus 4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~--------~~~afV~f~~~~~A~~Ai~~lng~~~~g~- 74 (104)
T d1weya_ 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------FKRVRINFSNPLSAADARLRLHKTEFLGK- 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--------TTEEEEECSSTTHHHHHHHTSTTSEETTE-
T ss_pred CCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecC--------CCEEEEEECCHHHHHHHHHHhcccccCCC-
Confidence 45789999999996 6654444333332 134444455432 34799999999999999999999988432
Q ss_pred CCeeeeEEEeccCC
Q 009879 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
.-.|+||--+
T Consensus 75 ----~l~v~~a~~~ 84 (104)
T d1weya_ 75 ----EMKLYFAQTL 84 (104)
T ss_dssp ----ECEEECCCCS
T ss_pred ----EeEEeecccC
Confidence 5678888433
No 80
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.77 E-value=0.039 Score=42.73 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=48.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...+|.|.+||+.+||+++.+.+..+- .|.-.. +... . ..-|||.|.+.+++..... +++.| + |
T Consensus 4 ~s~~lfV~nLp~~~te~~L~~~F~~~G--~v~~v~-~~~~----~--~gfafV~f~~~~~a~~a~~--~~~~i-~--g-- 67 (88)
T d1wf0a_ 4 GSSGVFVGRCTGDMTEDELREFFSQYG--DVMDVF-IPKP----F--RAFAFVTFADDQIAQSLCG--EDLII-K--G-- 67 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS--CCCEEE-CCSS----C--CSCCEEECSCHHHHHHTTT--CEEEE-T--T--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--CceEEE-Eeec----c--CceEEEEECCHHHHHHHHh--CCCEE-C--C--
Confidence 457899999999999999999998752 332221 1211 1 1249999999988876653 44443 2 2
Q ss_pred eeeEEEec
Q 009879 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
....|++|
T Consensus 68 ~~l~v~~a 75 (88)
T d1wf0a_ 68 ISVHISNA 75 (88)
T ss_dssp EEEEEECC
T ss_pred EEeEEEeC
Confidence 25677776
No 81
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.40 E-value=0.076 Score=41.45 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=55.7
Q ss_pred ceEEEecCCCC-CCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe-eEeCCCCe
Q 009879 8 TKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-FVNEKGAQ 85 (523)
Q Consensus 8 ~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v-FvDsKGne 85 (523)
-.|-|++||.. .|++++++.+.+. |.|....+.+.+- -|||.|.+.++.....+.+++.. .++.
T Consensus 9 r~v~v~nl~~~~~t~~eL~~lF~~f--G~I~~i~i~~~k~--------~afV~f~~~~~A~~A~~~l~~~~~~~~g---- 74 (89)
T d1x4da1 9 RVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKIN--------EAFIEMATTEDAQAAVDYYTTTPALVFG---- 74 (89)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSSS--------CEEEEESSHHHHHHHHHHHHHSCCEETT----
T ss_pred cEEEEECCCCCcCCHHHHHHHHHhh--CCeEEEEeeccce--------EEEEEEcchhhHHHHHHHHhhCCCccCC----
Confidence 45889999997 8999999999985 4677777765432 49999999999999998875442 2233
Q ss_pred eeeEEEecc
Q 009879 86 FKAIVEYAP 94 (523)
Q Consensus 86 ~~A~VEfAP 94 (523)
.+..|+||.
T Consensus 75 r~l~V~~s~ 83 (89)
T d1x4da1 75 KPVRVHLSQ 83 (89)
T ss_dssp EECEEEEEC
T ss_pred ceEEEEECC
Confidence 267888885
No 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.93 E-value=0.049 Score=43.04 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=46.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.+-|-|++||+..|++++++.+...-. ...+..++.... ...--.|||.|.+.+++....+ ++++.|
T Consensus 8 ~~~v~v~nLp~~~t~~~l~~~F~~~g~-i~~~~~~~~~~~---g~~~G~afV~F~s~~~a~~Al~-~n~~~i 74 (103)
T d2cpya1 8 KVCAHITNIPFSITKMDVLQFLEGIPV-DENAVHVLVDNN---GQGLGQALVQFKNEDDARKSER-LHRKKL 74 (103)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCC-CSTTEEECCCTT---SSCSSCEEEECSSHHHHHHHGG-GCSEEE
T ss_pred ceEEEEeCCCCCCCHHHHhhhhcccce-EEEEEEEEeCCC---CCcCccEEEEECCHHHHHHHHh-cCCCeE
Confidence 455999999999999999999986531 111222222111 1124589999999999987775 788776
No 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.31 E-value=0.057 Score=45.52 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=47.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC
Q 009879 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH 76 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~ 76 (523)
+|.+..+|.|++|||.+||+++.+.+... |.|....++.-.. . ...-..||+.|.+.+++........+.
T Consensus 2 ep~~~r~lfV~nLp~~~te~~L~~~F~~~--G~v~~~~~~~~~~-~-~~~~g~afv~f~~~~~a~~a~~~~~~~ 71 (183)
T d1u1qa_ 2 EPEQLRKLFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPN-T-KRSRGFGFVTYATVEEVDAAMNARPHK 71 (183)
T ss_dssp CCHHHHEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT-T-CCEEEEEEEEESSHHHHHHHHHTCSCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHc--CCEEEEEeeeccc-C-CCccCceecccCCHHHHHHHHHhcCCc
Confidence 44555689999999999999999999764 3343333321111 1 122357999999999998877765444
No 84
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.14 E-value=0.0095 Score=46.24 Aligned_cols=67 Identities=9% Similarity=0.240 Sum_probs=43.9
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCC---Ccee---EEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009879 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYN---WFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~---gkvd---wfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
+|-|.+||+.+||+++.+.+..... -.+. -..+.. ..+.. --|||.|.+.|++.... .++|+.|.+.
T Consensus 3 rlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~---~~~~k--g~afV~f~~~e~a~~a~-~l~g~~~~Gr 75 (90)
T d1u2fa_ 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ---INQDK--NFAFLEFRSVDETTQAM-AFDGIIFQGQ 75 (90)
T ss_dssp EEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECC---EETTT--TEEEEEESSCTTTTTGG-GGSSCCSSSS
T ss_pred EEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecc---cCCCc--eEEEEEeCCHHHHHHHH-hhCCcEECCE
Confidence 6899999999999999988876421 0110 001100 00111 23999999999987765 5999998554
No 85
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.55 E-value=0.95 Score=35.75 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=49.8
Q ss_pred EEEecC--CCCCCHHHHHHHh----cccC--CCceeEEEeeCCCC-CCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009879 10 VVIRHL--PPSLSQNDLLALF----RDHF--NDRYNWFCFRPGKS-SYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 10 VVIRrL--PP~LTEEeF~eqL----~p~~--~gkvdwfyFVpGK~-S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
|+|++| |-.|..++.++.| ...+ -|.|.-.. ++=+. ........+|||.|.+.++...-...++|..|-+
T Consensus 7 l~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~-I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~g 85 (104)
T d1o0pa_ 7 LCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE-IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 85 (104)
T ss_dssp EEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEE-CCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSS
T ss_pred EEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEE-EeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 677999 8887655444332 2222 24555433 32111 1123445689999999999999999999999844
Q ss_pred CCCCeeeeEEEecc
Q 009879 81 EKGAQFKAIVEYAP 94 (523)
Q Consensus 81 sKGne~~A~VEfAP 94 (523)
- .-.|+|++
T Consensus 86 R-----~v~v~f~~ 94 (104)
T d1o0pa_ 86 R-----VVVTKYCD 94 (104)
T ss_dssp S-----CCEEEEEC
T ss_pred e-----EEEEEEcC
Confidence 2 44556654
No 86
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.94 E-value=0.52 Score=37.19 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=47.3
Q ss_pred ceEEEecC--CCCCCH-----HHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 8 TKVVIRHL--PPSLSQ-----NDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 8 ~KVVIRrL--PP~LTE-----EeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
--|+|++| |..|.+ .+|.+-|...+. +.|.-.....++ ....|||.|.++++...-...++|+.|
T Consensus 9 r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~------~~G~~fV~f~~~e~A~~A~~~lng~~~ 82 (99)
T d2dita1 9 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH------PDGVASVSFRDPEEADYCIQTLDGRWF 82 (99)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC------TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred cEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCC------CccEEEEEECCHHHHHHHHHHhCCcEE
Confidence 34899999 776532 123333333221 345444433332 235899999999999999999999998
Q ss_pred EeCCCCeeeeEEEec
Q 009879 79 VNEKGAQFKAIVEYA 93 (523)
Q Consensus 79 vDsKGne~~A~VEfA 93 (523)
-+- .-.|+|+
T Consensus 83 ~gr-----~i~v~~~ 92 (99)
T d2dita1 83 GGR-----QITAQAW 92 (99)
T ss_dssp TTE-----ECEEEEC
T ss_pred CCE-----EEEEEEe
Confidence 332 4556654
No 87
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.88 E-value=0.24 Score=39.72 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=52.0
Q ss_pred EEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeeeE
Q 009879 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAI 89 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~ 89 (523)
+.|+.|+..++|+.|.+.+... |.|.-. .++-+.. ...-..|||.|.+.++.....+.++|+.|-+. +-.
T Consensus 30 ~~v~~~~~~~~ed~l~e~f~k~--G~I~~v-~I~~~~~--~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr-----~i~ 99 (104)
T d1jmta_ 30 VEMQEHYDEFFEEVFTEMEEKY--GEVEEM-NVCDNLG--DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ-----PIH 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--CCEEEE-EECCSSS--SSSEEEEEEEESCHHHHHHHHHHHTTCEETTE-----ECC
T ss_pred HHhhhhhhhhhHHHHHHHhccC--CCEEEE-EeecCCC--CCEeeEEEEEEechhHHHHHHHHHCCCEECCE-----EEE
Confidence 4567788888888887777654 345443 2432221 12235699999999999999999999988221 556
Q ss_pred EEecc
Q 009879 90 VEYAP 94 (523)
Q Consensus 90 VEfAP 94 (523)
|||+|
T Consensus 100 v~~sP 104 (104)
T d1jmta_ 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 78776
No 88
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.20 E-value=3.6 Score=31.33 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=44.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009879 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
..+.|.|--|||+.|++ .++.+... |.|.-..+.+. -.-|||.|.+.+++..-.+ ++|..|
T Consensus 3 ~~~wV~V~G~p~~~~~~-il~~F~~~--G~I~~~~~~~~--------~~~~fV~f~~~~~A~~Al~-~nG~~~ 63 (81)
T d1wwha1 3 DDTWVTVFGFPQASASY-ILLQFAQY--GNILKHVMSNT--------GNWMHIRYQSKLQARKALS-KDGRIF 63 (81)
T ss_dssp GGGEEEEECCCGGGHHH-HHHHHHTT--SCEEEEEECSS--------SSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred cccEEEEECCChHHHHH-HHHHHHhh--hhhheEEecCC--------CCEEEEEEcccHHHHHHHh-cCCCeE
Confidence 45789999999999965 55667754 34544343221 1369999999999998875 899887
No 89
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.96 E-value=29 Score=27.26 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhc--CCeeEeCCCCe
Q 009879 22 NDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLN--GHVFVNEKGAQ 85 (523)
Q Consensus 22 EeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fd--G~vFvDsKGne 85 (523)
-.|++.|.+.|. |+-|.|+ + ....+.++++-|.-++.-..|.+.++ |+.|+|..+|+
T Consensus 25 ~~Fl~~l~~~~n--ITeF~YR---~--~~~~~a~VlvGi~~~~~~~~l~~~L~~~gy~~~D~tdNe 83 (91)
T d1tdja3 25 LRFLNTLGTYWN--ISLFHYR---S--HGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNP 83 (91)
T ss_dssp HHHHHHHCSCCC--CCEEECB---C--TTTCSSCEEEEEC----------------CEEEECTTCH
T ss_pred HHHHHHhCCCCc--EEEEEEe---e--cCCCeeeEEEEEecCchhHHHHHHHHHcCCCeEECCCCH
Confidence 468888887663 6667774 1 22357888888875444344544444 57888877654
No 90
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator TM1602, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.30 E-value=46 Score=27.01 Aligned_cols=58 Identities=21% Similarity=0.406 Sum_probs=43.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCce-eEEEeeCCCCCCCCCcce--eEEEEecCcccHHHHHHHhcCC
Q 009879 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSYKHQRYS--RAYVELKKPAGVFEFAELLNGH 76 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkv-dwfyFVpGK~S~Kp~~yS--RAYI~Fkn~Edl~~F~d~fdG~ 76 (523)
..++||| .|.=+++|+...|+ ..+.| |-+..+ |+|. ||.|+..+..|+..|.+.+...
T Consensus 6 r~i~v~H-~~e~~~~EL~~IVd--~Gg~V~DV~VeH--------pvYGei~~~L~I~sr~Dv~~F~~~l~~~ 66 (107)
T d1j5ya2 6 RLVAVKH-APEEIKEELLCVVR--NGGRIVDVIVEH--------PVYGEIRGIIDVSSEEEVLKFVNLMEMA 66 (107)
T ss_dssp EEEEEEC-CGGGHHHHHHHHHH--TTCEEEEEEEEE--------TTTEEEEEEEEECSHHHHHHHHHHHHHC
T ss_pred EEEEEeC-CHHHHHHHHHHHHh--CCCEEEEEEEec--------CCCceEEEEEecCCHHHHHHHHHHHhcc
Confidence 3577888 77888999999886 35555 434444 3444 8999999999999999998754
No 91
>d2cfxa2 d.58.4.2 (A:64-140) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=21.65 E-value=74 Score=22.85 Aligned_cols=50 Identities=8% Similarity=0.071 Sum_probs=40.4
Q ss_pred CHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe
Q 009879 20 SQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 77 (523)
Q Consensus 20 TEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v 77 (523)
.-++|.+.|...+ .|...|.+-|.+.. -+-+.+.+.+++..|.+.+.+..
T Consensus 14 ~~~~~~~~i~~~p--eV~e~~~vtG~~D~------il~v~~~d~~~l~~~i~~l~~v~ 63 (77)
T d2cfxa2 14 DYERFKSYIQTLP--NIEFCYRIAGAACY------MLKINAESLEAVEDFINKTSPYA 63 (77)
T ss_dssp CHHHHHHHHHTCT--TEEEEEEEESSSSE------EEEEEESSHHHHHHHHHHHTTTE
T ss_pred CHHHHHHHHhcCc--hheEEEEEcCCCCE------EEEEEECCHHHHHHHHhhCCCcc
Confidence 4678999998775 48888999997743 56788999999999999987653
Done!