Query 009881
Match_columns 523
No_of_seqs 372 out of 1773
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 18:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4405 GDP dissociation inhib 100.0 2E-72 4.2E-77 551.2 19.0 436 19-510 5-479 (547)
2 PF00996 GDI: GDP dissociation 100.0 6.5E-70 1.4E-74 563.3 34.6 372 19-442 1-374 (438)
3 PTZ00363 rab-GDP dissociation 100.0 1.9E-63 4.1E-68 522.0 41.6 375 19-444 1-377 (443)
4 KOG1439 RAB proteins geranylge 100.0 1.8E-55 3.8E-60 433.9 25.1 370 20-443 2-375 (440)
5 COG5044 MRS6 RAB proteins gera 100.0 1.3E-52 2.7E-57 408.9 25.0 368 19-443 3-374 (434)
6 TIGR02734 crtI_fam phytoene de 100.0 2.4E-26 5.2E-31 248.6 30.7 344 25-426 1-378 (502)
7 TIGR02730 carot_isom carotene 99.9 1E-24 2.3E-29 235.1 31.5 386 23-480 1-426 (493)
8 COG1233 Phytoene dehydrogenase 99.9 3.3E-25 7.1E-30 237.8 25.9 260 20-336 1-279 (487)
9 TIGR02733 desat_CrtD C-3',4' d 99.9 7E-24 1.5E-28 228.7 33.0 382 23-480 2-426 (492)
10 TIGR00562 proto_IX_ox protopor 99.9 1.4E-22 3.1E-27 216.9 32.4 351 22-444 2-385 (462)
11 PRK07233 hypothetical protein; 99.9 5E-22 1.1E-26 210.6 32.1 347 24-444 1-355 (434)
12 PLN02576 protoporphyrinogen ox 99.9 5.9E-22 1.3E-26 214.0 32.8 295 16-376 6-332 (496)
13 PRK12416 protoporphyrinogen ox 99.9 1.6E-21 3.5E-26 208.8 29.5 325 23-422 2-357 (463)
14 PRK11883 protoporphyrinogen ox 99.9 4.2E-21 9.1E-26 204.7 30.2 325 24-423 2-352 (451)
15 COG1232 HemY Protoporphyrinoge 99.9 9.5E-21 2.1E-25 197.1 28.8 347 24-445 2-372 (444)
16 TIGR02731 phytoene_desat phyto 99.9 3.2E-20 6.9E-25 198.3 33.5 296 24-378 1-315 (453)
17 PRK07208 hypothetical protein; 99.9 3.2E-20 6.9E-25 199.7 33.5 351 20-444 2-384 (479)
18 PLN02612 phytoene desaturase 99.9 6.7E-20 1.4E-24 200.1 34.2 295 22-377 93-404 (567)
19 PLN02487 zeta-carotene desatur 99.8 4.6E-19 9.9E-24 191.8 27.9 270 21-341 74-364 (569)
20 TIGR02732 zeta_caro_desat caro 99.8 3.7E-19 8E-24 190.6 25.4 267 24-341 1-288 (474)
21 PLN02268 probable polyamine ox 99.8 4.1E-18 8.9E-23 181.1 21.6 273 23-379 1-294 (435)
22 TIGR03467 HpnE squalene-associ 99.8 5E-17 1.1E-21 171.3 28.4 276 36-376 1-287 (419)
23 KOG4254 Phytoene desaturase [C 99.8 1.9E-18 4.2E-23 173.7 15.9 152 270-426 255-428 (561)
24 PLN02676 polyamine oxidase 99.8 2.1E-17 4.6E-22 177.2 23.4 286 19-378 23-327 (487)
25 PLN02529 lysine-specific histo 99.8 2.9E-16 6.2E-21 173.5 30.7 279 21-377 159-447 (738)
26 PLN02568 polyamine oxidase 99.7 2.6E-16 5.7E-21 170.3 23.9 298 18-376 1-339 (539)
27 PLN02328 lysine-specific histo 99.7 2.4E-16 5.2E-21 174.9 23.9 279 21-377 237-527 (808)
28 PLN03000 amine oxidase 99.7 5.5E-15 1.2E-19 164.1 30.3 281 21-378 183-472 (881)
29 COG1231 Monoamine oxidase [Ami 99.7 1E-16 2.2E-21 163.5 14.3 99 271-377 201-300 (450)
30 PRK13977 myosin-cross-reactive 99.7 1.3E-14 2.8E-19 154.8 24.7 244 18-332 18-287 (576)
31 PLN02976 amine oxidase 99.6 9.7E-14 2.1E-18 158.3 22.2 104 270-378 927-1038(1713)
32 KOG1276 Protoporphyrinogen oxi 99.6 8.6E-13 1.9E-17 132.9 24.8 245 22-323 11-293 (491)
33 KOG0029 Amine oxidase [Seconda 99.6 6.1E-14 1.3E-18 149.6 17.3 111 272-389 212-323 (501)
34 PF01593 Amino_oxidase: Flavin 99.5 6.9E-14 1.5E-18 146.9 15.1 157 278-445 208-370 (450)
35 COG2907 Predicted NAD/FAD-bind 99.5 2.2E-12 4.7E-17 126.6 20.6 294 21-378 7-309 (447)
36 COG3349 Uncharacterized conser 99.3 2.6E-11 5.7E-16 126.4 13.9 249 24-331 2-268 (485)
37 KOG0685 Flavin-containing amin 99.3 1.7E-10 3.6E-15 118.4 17.2 108 271-380 215-330 (498)
38 COG2081 Predicted flavoprotein 99.2 1.8E-10 4E-15 116.3 13.3 59 271-332 102-161 (408)
39 TIGR00031 UDP-GALP_mutase UDP- 99.2 2.7E-10 5.8E-15 117.8 14.4 42 23-64 2-43 (377)
40 PF13450 NAD_binding_8: NAD(P) 99.2 5.6E-11 1.2E-15 92.2 6.4 41 27-67 1-41 (68)
41 PF01266 DAO: FAD dependent ox 99.2 3.4E-10 7.3E-15 116.2 13.3 60 271-333 136-198 (358)
42 COG0562 Glf UDP-galactopyranos 99.0 2.4E-09 5.2E-14 104.7 11.4 101 22-163 1-101 (374)
43 PF03486 HI0933_like: HI0933-l 99.0 2.4E-09 5.2E-14 112.1 10.6 60 271-332 100-160 (409)
44 COG0579 Predicted dehydrogenas 98.9 1.2E-08 2.6E-13 106.3 13.2 61 271-333 142-206 (429)
45 PRK11728 hydroxyglutarate oxid 98.9 2.4E-08 5.3E-13 104.8 15.6 59 271-333 138-199 (393)
46 TIGR03329 Phn_aa_oxid putative 98.9 8.5E-08 1.8E-12 102.9 19.7 58 271-333 172-232 (460)
47 TIGR01377 soxA_mon sarcosine o 98.8 9.2E-08 2E-12 99.7 17.3 58 271-332 134-194 (380)
48 PRK08274 tricarballylate dehyd 98.8 1.9E-07 4E-12 100.4 18.0 59 273-333 125-187 (466)
49 PRK00711 D-amino acid dehydrog 98.8 2.7E-07 5.8E-12 97.6 18.0 61 270-333 189-252 (416)
50 PRK11101 glpA sn-glycerol-3-ph 98.8 1.4E-07 3.1E-12 103.1 15.9 60 270-332 138-205 (546)
51 PRK12845 3-ketosteroid-delta-1 98.7 7.8E-07 1.7E-11 97.5 19.8 45 18-63 12-56 (564)
52 PRK11259 solA N-methyltryptoph 98.7 1.8E-07 3.8E-12 97.5 13.5 58 271-332 138-198 (376)
53 TIGR01373 soxB sarcosine oxida 98.7 6E-07 1.3E-11 94.7 16.6 61 271-333 172-235 (407)
54 PRK01747 mnmC bifunctional tRN 98.6 5E-07 1.1E-11 101.3 15.8 58 271-332 397-457 (662)
55 PF01946 Thi4: Thi4 family; PD 98.6 2.4E-08 5.1E-13 93.6 4.0 43 21-63 16-58 (230)
56 COG1635 THI4 Ribulose 1,5-bisp 98.6 3.2E-08 6.8E-13 92.2 3.8 42 21-62 29-70 (262)
57 PTZ00383 malate:quinone oxidor 98.6 1.7E-06 3.8E-11 93.0 17.1 60 271-333 199-268 (497)
58 KOG2820 FAD-dependent oxidored 98.5 2.9E-06 6.2E-11 84.0 15.0 57 281-337 155-212 (399)
59 COG0578 GlpA Glycerol-3-phosph 98.5 1.7E-06 3.8E-11 92.1 14.4 47 18-64 8-54 (532)
60 COG0644 FixC Dehydrogenases (f 98.5 1.4E-07 3.1E-12 99.1 5.4 43 21-63 2-44 (396)
61 TIGR00292 thiazole biosynthesi 98.4 2.1E-07 4.5E-12 91.6 5.2 41 21-61 20-60 (254)
62 PRK10157 putative oxidoreducta 98.4 2.5E-07 5.4E-12 98.3 5.6 40 21-60 4-43 (428)
63 PRK04176 ribulose-1,5-biphosph 98.4 2.7E-07 5.8E-12 91.1 5.2 41 21-61 24-64 (257)
64 PF06100 Strep_67kDa_ant: Stre 98.4 1.3E-05 2.7E-10 84.1 17.6 241 22-332 2-268 (500)
65 PRK10015 oxidoreductase; Provi 98.4 3.1E-07 6.8E-12 97.5 5.5 41 20-60 3-43 (429)
66 COG3380 Predicted NAD/FAD-depe 98.4 3.3E-07 7.2E-12 87.9 4.9 46 23-68 2-47 (331)
67 PRK05249 soluble pyridine nucl 98.3 5.4E-07 1.2E-11 96.7 5.5 46 19-64 2-47 (461)
68 PRK07364 2-octaprenyl-6-methox 98.3 6.2E-07 1.4E-11 94.7 5.9 45 13-57 9-53 (415)
69 PRK06115 dihydrolipoamide dehy 98.3 5.7E-07 1.2E-11 96.6 4.9 44 20-63 1-44 (466)
70 PRK07121 hypothetical protein; 98.3 1E-06 2.3E-11 95.3 6.8 42 21-62 19-60 (492)
71 PF01494 FAD_binding_3: FAD bi 98.3 6.9E-07 1.5E-11 91.5 4.6 36 22-57 1-36 (356)
72 PLN02172 flavin-containing mon 98.3 8.6E-07 1.9E-11 94.8 5.3 43 21-63 9-51 (461)
73 PF12831 FAD_oxidored: FAD dep 98.3 7.2E-07 1.6E-11 94.7 4.7 40 24-63 1-40 (428)
74 PRK08010 pyridine nucleotide-d 98.3 7.9E-07 1.7E-11 94.9 5.0 43 21-63 2-45 (441)
75 PLN00093 geranylgeranyl diphos 98.3 1E-06 2.3E-11 93.9 5.7 42 14-55 31-72 (450)
76 TIGR02485 CobZ_N-term precorri 98.2 1.2E-05 2.5E-10 85.7 13.4 61 272-332 116-177 (432)
77 COG2072 TrkA Predicted flavopr 98.2 1.2E-06 2.5E-11 93.3 5.4 50 19-68 5-55 (443)
78 TIGR02032 GG-red-SF geranylger 98.2 1.2E-06 2.6E-11 87.6 5.2 37 23-59 1-37 (295)
79 PRK07251 pyridine nucleotide-d 98.2 1.1E-06 2.3E-11 93.8 5.0 42 21-62 2-44 (438)
80 PRK12266 glpD glycerol-3-phosp 98.2 1.3E-06 2.8E-11 94.9 5.6 42 20-61 4-45 (508)
81 PRK07494 2-octaprenyl-6-methox 98.2 1.4E-06 3.1E-11 91.2 5.4 40 18-57 3-42 (388)
82 PRK06292 dihydrolipoamide dehy 98.2 1.4E-06 3E-11 93.5 5.2 43 20-63 1-43 (460)
83 PRK06481 fumarate reductase fl 98.2 2.3E-06 5E-11 92.9 6.9 43 20-62 59-101 (506)
84 PRK06467 dihydrolipoamide dehy 98.2 1.6E-06 3.4E-11 93.3 5.4 43 21-63 3-45 (471)
85 PRK06116 glutathione reductase 98.2 1.5E-06 3.3E-11 92.9 4.9 42 21-63 3-44 (450)
86 TIGR01350 lipoamide_DH dihydro 98.2 1.7E-06 3.7E-11 92.8 5.1 41 22-63 1-41 (461)
87 PRK13369 glycerol-3-phosphate 98.2 2.1E-06 4.5E-11 93.2 5.7 44 19-62 3-46 (502)
88 PTZ00058 glutathione reductase 98.2 2.3E-06 4.9E-11 93.5 6.0 48 15-63 41-88 (561)
89 PRK06370 mercuric reductase; V 98.2 2.1E-06 4.5E-11 92.2 5.5 44 19-63 2-45 (463)
90 PRK08013 oxidoreductase; Provi 98.2 2E-06 4.3E-11 90.6 5.1 38 20-57 1-38 (400)
91 PRK12409 D-amino acid dehydrog 98.1 2.3E-06 5E-11 90.3 5.5 40 23-62 2-41 (410)
92 TIGR01424 gluta_reduc_2 glutat 98.1 1.9E-06 4.1E-11 92.1 4.8 41 22-63 2-42 (446)
93 PRK06416 dihydrolipoamide dehy 98.1 2.3E-06 4.9E-11 91.9 5.1 42 21-63 3-44 (462)
94 PF00890 FAD_binding_2: FAD bi 98.1 1.9E-06 4E-11 91.2 4.4 54 277-332 139-197 (417)
95 PRK09126 hypothetical protein; 98.1 2.3E-06 5.1E-11 89.6 5.0 36 22-57 3-38 (392)
96 PF13738 Pyr_redox_3: Pyridine 98.1 1.8E-06 3.9E-11 81.7 3.6 38 26-63 1-39 (203)
97 TIGR01421 gluta_reduc_1 glutat 98.1 2.4E-06 5.1E-11 91.5 5.0 41 22-63 2-42 (450)
98 PF00732 GMC_oxred_N: GMC oxid 98.1 2.2E-06 4.9E-11 86.2 4.3 39 23-61 1-40 (296)
99 PLN02463 lycopene beta cyclase 98.1 3.5E-06 7.5E-11 89.7 5.9 47 9-55 15-61 (447)
100 PRK08849 2-octaprenyl-3-methyl 98.1 2.6E-06 5.7E-11 89.1 4.9 35 21-55 2-36 (384)
101 PRK05976 dihydrolipoamide dehy 98.1 3.1E-06 6.7E-11 91.1 5.4 42 21-63 3-44 (472)
102 PRK05192 tRNA uridine 5-carbox 98.1 2.9E-06 6.4E-11 92.2 5.1 41 20-60 2-43 (618)
103 PRK08773 2-octaprenyl-3-methyl 98.1 3.3E-06 7.1E-11 88.6 5.3 51 279-332 113-163 (392)
104 PRK07045 putative monooxygenas 98.1 3.1E-06 6.6E-11 88.7 5.1 52 280-332 107-159 (388)
105 PRK07818 dihydrolipoamide dehy 98.1 3.3E-06 7.2E-11 90.8 5.4 43 21-64 3-45 (466)
106 TIGR02023 BchP-ChlP geranylger 98.1 3.6E-06 7.8E-11 88.3 5.5 32 23-54 1-32 (388)
107 PRK14694 putative mercuric red 98.1 3.4E-06 7.3E-11 90.8 5.3 44 19-63 3-46 (468)
108 PRK08850 2-octaprenyl-6-methox 98.1 3.2E-06 6.9E-11 89.2 4.9 35 20-54 2-36 (405)
109 PRK08020 ubiF 2-octaprenyl-3-m 98.1 3.3E-06 7E-11 88.5 4.9 36 20-55 3-38 (391)
110 TIGR01292 TRX_reduct thioredox 98.1 3.5E-06 7.5E-11 84.6 4.8 40 23-63 1-40 (300)
111 PRK13748 putative mercuric red 98.1 3.4E-06 7.4E-11 92.8 5.0 42 21-63 97-138 (561)
112 TIGR02028 ChlP geranylgeranyl 98.1 4E-06 8.6E-11 88.3 5.2 38 23-60 1-38 (398)
113 PLN02661 Putative thiazole syn 98.1 3.8E-06 8.3E-11 85.4 4.7 38 22-59 92-130 (357)
114 TIGR01813 flavo_cyto_c flavocy 98.1 4E-06 8.8E-11 89.4 5.1 53 279-332 130-186 (439)
115 PRK06327 dihydrolipoamide dehy 98.0 4.6E-06 1E-10 89.9 5.4 44 21-64 3-52 (475)
116 PRK12837 3-ketosteroid-delta-1 98.0 4.2E-06 9.1E-11 91.0 5.2 40 21-61 6-45 (513)
117 COG1148 HdrA Heterodisulfide r 98.0 2.9E-06 6.3E-11 87.4 3.6 47 19-65 121-167 (622)
118 PLN02697 lycopene epsilon cycl 98.0 6.1E-06 1.3E-10 89.4 6.2 45 13-58 100-144 (529)
119 TIGR01988 Ubi-OHases Ubiquinon 98.0 4E-06 8.7E-11 87.4 4.7 51 279-332 106-157 (385)
120 TIGR03315 Se_ygfK putative sel 98.0 5.8E-06 1.3E-10 94.9 6.3 44 20-63 535-578 (1012)
121 PRK12834 putative FAD-binding 98.0 4.8E-06 1E-10 91.4 5.5 42 21-62 3-46 (549)
122 TIGR01790 carotene-cycl lycope 98.0 4.7E-06 1E-10 87.2 5.2 37 24-60 1-37 (388)
123 PRK07608 ubiquinone biosynthes 98.0 4.6E-06 1E-10 87.2 5.1 37 22-58 5-41 (388)
124 PRK08163 salicylate hydroxylas 98.0 4.7E-06 1E-10 87.5 5.1 37 21-57 3-39 (396)
125 PRK12842 putative succinate de 98.0 5.3E-06 1.1E-10 91.5 5.6 44 19-62 6-49 (574)
126 PRK07236 hypothetical protein; 98.0 5.1E-06 1.1E-10 87.0 5.3 37 20-56 4-40 (386)
127 KOG1298 Squalene monooxygenase 98.0 4.7E-06 1E-10 83.7 4.5 36 19-54 42-77 (509)
128 PRK06184 hypothetical protein; 98.0 5.1E-06 1.1E-10 90.2 5.2 38 20-57 1-38 (502)
129 PLN02985 squalene monooxygenas 98.0 7E-06 1.5E-10 89.1 6.1 41 16-56 37-77 (514)
130 PRK12831 putative oxidoreducta 98.0 7.2E-06 1.6E-10 88.0 6.0 46 17-62 135-180 (464)
131 PRK06185 hypothetical protein; 98.0 5.9E-06 1.3E-10 87.1 5.1 37 20-56 4-40 (407)
132 KOG2844 Dimethylglycine dehydr 98.0 6.9E-05 1.5E-09 80.2 12.8 58 271-331 176-236 (856)
133 PRK14727 putative mercuric red 98.0 5.5E-06 1.2E-10 89.3 4.8 44 20-63 14-57 (479)
134 COG0665 DadA Glycine/D-amino a 98.0 6.9E-06 1.5E-10 85.7 5.4 59 271-333 145-207 (387)
135 TIGR02053 MerA mercuric reduct 98.0 6E-06 1.3E-10 88.7 5.0 40 23-63 1-40 (463)
136 PRK05714 2-octaprenyl-3-methyl 98.0 5.4E-06 1.2E-10 87.4 4.5 52 280-334 113-165 (405)
137 COG3573 Predicted oxidoreducta 98.0 7.5E-06 1.6E-10 80.8 5.1 43 19-61 2-46 (552)
138 KOG1399 Flavin-containing mono 98.0 6.1E-06 1.3E-10 87.2 4.8 45 20-64 4-48 (448)
139 TIGR03143 AhpF_homolog putativ 98.0 6.4E-06 1.4E-10 90.4 5.2 42 21-63 3-44 (555)
140 TIGR03364 HpnW_proposed FAD de 98.0 7.5E-06 1.6E-10 85.0 5.4 34 23-56 1-34 (365)
141 PRK06834 hypothetical protein; 98.0 7.7E-06 1.7E-10 88.3 5.4 37 20-56 1-37 (488)
142 PF04820 Trp_halogenase: Trypt 98.0 6.7E-05 1.5E-09 80.2 12.4 53 279-333 154-207 (454)
143 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 6.4E-06 1.4E-10 86.5 4.6 35 22-56 2-36 (390)
144 PRK12844 3-ketosteroid-delta-1 98.0 7.4E-06 1.6E-10 89.9 5.2 41 21-61 5-45 (557)
145 PRK05732 2-octaprenyl-6-methox 98.0 7E-06 1.5E-10 86.0 4.7 35 20-54 1-38 (395)
146 PRK07190 hypothetical protein; 98.0 7.9E-06 1.7E-10 88.2 5.2 38 20-57 3-40 (487)
147 PRK07057 sdhA succinate dehydr 98.0 8.8E-06 1.9E-10 89.9 5.5 45 17-61 7-51 (591)
148 TIGR01984 UbiH 2-polyprenyl-6- 97.9 7.1E-06 1.5E-10 85.6 4.6 53 279-334 105-159 (382)
149 PLN02464 glycerol-3-phosphate 97.9 9.2E-06 2E-10 90.2 5.6 54 279-332 232-290 (627)
150 PRK09853 putative selenate red 97.9 1.2E-05 2.6E-10 92.1 6.4 45 19-63 536-580 (1019)
151 PTZ00367 squalene epoxidase; P 97.9 9E-06 2E-10 88.9 5.2 40 16-55 27-66 (567)
152 PTZ00052 thioredoxin reductase 97.9 8.6E-06 1.9E-10 88.3 4.9 51 280-333 223-273 (499)
153 PRK06617 2-octaprenyl-6-methox 97.9 8.5E-06 1.8E-10 85.0 4.6 33 23-55 2-34 (374)
154 PRK06847 hypothetical protein; 97.9 1.1E-05 2.5E-10 83.8 5.6 51 279-332 107-157 (375)
155 PRK12835 3-ketosteroid-delta-1 97.9 9.2E-06 2E-10 89.6 5.0 41 21-61 10-50 (584)
156 PRK06183 mhpA 3-(3-hydroxyphen 97.9 1.4E-05 2.9E-10 87.6 6.3 41 20-60 8-48 (538)
157 COG1249 Lpd Pyruvate/2-oxoglut 97.9 1E-05 2.2E-10 85.8 5.0 45 20-64 2-46 (454)
158 COG0654 UbiH 2-polyprenyl-6-me 97.9 9.1E-06 2E-10 85.2 4.6 55 277-334 102-159 (387)
159 PRK08132 FAD-dependent oxidore 97.9 1.5E-05 3.2E-10 87.5 6.5 45 20-64 21-67 (547)
160 PRK06753 hypothetical protein; 97.9 9.5E-06 2.1E-10 84.4 4.7 35 23-57 1-35 (373)
161 COG0492 TrxB Thioredoxin reduc 97.9 1.1E-05 2.3E-10 81.4 4.8 46 20-65 1-46 (305)
162 PRK06126 hypothetical protein; 97.9 1.1E-05 2.5E-10 88.4 5.2 38 19-56 4-41 (545)
163 PLN02507 glutathione reductase 97.9 1.2E-05 2.5E-10 87.2 5.2 52 279-333 244-295 (499)
164 PRK08958 sdhA succinate dehydr 97.9 1.3E-05 2.7E-10 88.6 5.5 43 18-60 3-45 (588)
165 PRK08641 sdhA succinate dehydr 97.9 1.2E-05 2.6E-10 88.7 5.3 40 21-60 2-41 (589)
166 PRK07803 sdhA succinate dehydr 97.9 1.3E-05 2.8E-10 89.2 5.4 42 19-60 5-46 (626)
167 PRK09078 sdhA succinate dehydr 97.9 1.3E-05 2.8E-10 88.8 5.4 45 16-60 6-50 (598)
168 TIGR01316 gltA glutamate synth 97.9 1.7E-05 3.7E-10 84.8 6.1 45 18-62 129-173 (449)
169 PRK06452 sdhA succinate dehydr 97.9 1.3E-05 2.9E-10 88.1 5.4 42 20-61 3-44 (566)
170 TIGR01989 COQ6 Ubiquinone bios 97.9 1.1E-05 2.4E-10 85.9 4.6 34 23-56 1-38 (437)
171 PRK12839 hypothetical protein; 97.9 1.5E-05 3.2E-10 87.6 5.7 43 21-63 7-49 (572)
172 PRK08243 4-hydroxybenzoate 3-m 97.9 1.1E-05 2.5E-10 84.6 4.6 35 22-56 2-36 (392)
173 PRK12779 putative bifunctional 97.9 1.4E-05 3.1E-10 92.3 5.7 43 20-62 304-346 (944)
174 TIGR01789 lycopene_cycl lycope 97.9 1.4E-05 3E-10 83.3 5.0 37 24-60 1-39 (370)
175 PRK12769 putative oxidoreducta 97.9 1.7E-05 3.7E-10 88.8 6.0 44 20-63 325-368 (654)
176 PRK07538 hypothetical protein; 97.9 1.3E-05 2.8E-10 84.8 4.8 35 23-57 1-35 (413)
177 PRK07843 3-ketosteroid-delta-1 97.9 1.6E-05 3.5E-10 87.2 5.6 42 21-62 6-47 (557)
178 PRK12809 putative oxidoreducta 97.9 1.9E-05 4.2E-10 88.1 6.2 48 15-62 303-350 (639)
179 PRK08244 hypothetical protein; 97.9 1.4E-05 3.1E-10 86.5 4.9 36 22-57 2-37 (493)
180 PRK07804 L-aspartate oxidase; 97.8 1.5E-05 3.3E-10 87.2 5.1 40 21-60 15-54 (541)
181 PRK07333 2-octaprenyl-6-methox 97.8 1.3E-05 2.9E-10 84.2 4.5 51 279-332 111-161 (403)
182 PRK11445 putative oxidoreducta 97.8 1.4E-05 3.1E-10 82.6 4.6 35 22-57 1-35 (351)
183 TIGR01423 trypano_reduc trypan 97.8 1.6E-05 3.4E-10 85.7 5.1 52 279-332 231-282 (486)
184 TIGR01320 mal_quin_oxido malat 97.8 1.4E-05 2.9E-10 86.2 4.5 62 270-333 166-235 (483)
185 PF05834 Lycopene_cycl: Lycope 97.8 1.7E-05 3.7E-10 82.8 5.0 34 24-57 1-36 (374)
186 PRK05257 malate:quinone oxidor 97.8 1.6E-05 3.5E-10 85.8 4.9 44 19-62 2-47 (494)
187 PTZ00139 Succinate dehydrogena 97.8 1.8E-05 3.9E-10 87.8 5.3 53 279-332 166-223 (617)
188 PLN02546 glutathione reductase 97.8 1.9E-05 4.2E-10 86.3 5.2 44 21-64 78-130 (558)
189 PRK12810 gltD glutamate syntha 97.8 2.5E-05 5.3E-10 84.1 5.8 43 20-62 141-183 (471)
190 PRK06134 putative FAD-binding 97.8 2.4E-05 5.2E-10 86.3 5.9 45 19-63 9-53 (581)
191 PRK02106 choline dehydrogenase 97.8 2.1E-05 4.5E-10 86.6 5.2 37 20-56 3-40 (560)
192 PRK12843 putative FAD-binding 97.8 2.9E-05 6.4E-10 85.6 6.4 43 21-63 15-57 (578)
193 PRK07588 hypothetical protein; 97.8 1.9E-05 4.1E-10 82.8 4.7 34 23-56 1-34 (391)
194 PRK12775 putative trifunctiona 97.8 2.3E-05 4.9E-10 91.4 5.7 43 20-62 428-470 (1006)
195 TIGR01372 soxA sarcosine oxida 97.8 2.4E-05 5.2E-10 91.4 5.7 43 21-63 162-204 (985)
196 KOG2614 Kynurenine 3-monooxyge 97.8 2.5E-05 5.5E-10 79.7 5.1 39 22-60 2-40 (420)
197 PRK15317 alkyl hydroperoxide r 97.8 2.2E-05 4.8E-10 85.5 5.1 41 20-62 209-249 (517)
198 PRK06175 L-aspartate oxidase; 97.8 2.2E-05 4.8E-10 83.5 4.9 58 273-332 121-183 (433)
199 PF00743 FMO-like: Flavin-bind 97.8 2E-05 4.4E-10 85.6 4.6 40 24-63 3-42 (531)
200 PLN00128 Succinate dehydrogena 97.8 2.3E-05 5E-10 87.1 5.1 41 21-61 49-89 (635)
201 PRK07395 L-aspartate oxidase; 97.8 2.3E-05 5.1E-10 85.8 5.0 42 19-61 6-47 (553)
202 PRK07573 sdhA succinate dehydr 97.8 2.5E-05 5.4E-10 87.0 5.2 40 21-60 34-73 (640)
203 PRK06069 sdhA succinate dehydr 97.7 2.8E-05 6.1E-10 85.8 5.2 42 20-61 3-47 (577)
204 PTZ00153 lipoamide dehydrogena 97.7 2.9E-05 6.2E-10 86.3 5.2 43 21-63 115-158 (659)
205 PRK08626 fumarate reductase fl 97.7 2.7E-05 5.9E-10 86.9 5.0 52 279-332 158-214 (657)
206 PRK05868 hypothetical protein; 97.7 3E-05 6.5E-10 80.9 5.0 35 23-57 2-36 (372)
207 KOG2853 Possible oxidoreductas 97.7 4E-05 8.7E-10 75.9 5.5 53 7-59 65-127 (509)
208 PRK05945 sdhA succinate dehydr 97.7 2.5E-05 5.4E-10 86.1 4.6 58 273-332 128-191 (575)
209 TIGR01812 sdhA_frdA_Gneg succi 97.7 2.8E-05 6.1E-10 85.7 5.0 52 279-332 129-185 (566)
210 PLN02815 L-aspartate oxidase 97.7 2.9E-05 6.3E-10 85.6 4.9 39 22-61 29-67 (594)
211 PRK05335 tRNA (uracil-5-)-meth 97.7 3E-05 6.5E-10 81.0 4.7 37 23-59 3-39 (436)
212 TIGR02462 pyranose_ox pyranose 97.7 3.3E-05 7.2E-10 83.7 5.1 39 23-61 1-39 (544)
213 PRK11749 dihydropyrimidine deh 97.7 4.7E-05 1E-09 81.7 6.2 43 20-62 138-180 (457)
214 PRK06475 salicylate hydroxylas 97.7 3.2E-05 6.8E-10 81.5 4.8 35 23-57 3-37 (400)
215 PRK12778 putative bifunctional 97.7 4.2E-05 9.1E-10 87.1 6.1 44 19-62 428-471 (752)
216 PRK10262 thioredoxin reductase 97.7 3.4E-05 7.4E-10 78.7 4.8 42 21-63 5-46 (321)
217 PLN02852 ferredoxin-NADP+ redu 97.7 5.1E-05 1.1E-09 81.4 6.1 45 19-63 23-69 (491)
218 TIGR01318 gltD_gamma_fam gluta 97.7 5E-05 1.1E-09 81.6 6.0 44 19-62 138-181 (467)
219 PRK06996 hypothetical protein; 97.7 3.7E-05 7.9E-10 80.9 4.9 40 17-56 6-49 (398)
220 PRK08294 phenol 2-monooxygenas 97.7 5.1E-05 1.1E-09 84.5 6.1 44 20-63 30-76 (634)
221 TIGR00551 nadB L-aspartate oxi 97.7 3.9E-05 8.5E-10 83.0 5.0 52 279-332 128-183 (488)
222 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 3.8E-05 8.2E-10 80.6 4.6 38 24-61 2-39 (433)
223 PTZ00306 NADH-dependent fumara 97.7 4.1E-05 8.9E-10 90.8 5.4 43 20-62 407-449 (1167)
224 PRK13339 malate:quinone oxidor 97.7 4.3E-05 9.4E-10 82.1 4.9 42 21-62 5-48 (497)
225 TIGR03140 AhpF alkyl hydropero 97.7 4.7E-05 1E-09 82.9 5.3 41 20-62 210-250 (515)
226 TIGR03219 salicylate_mono sali 97.7 4.7E-05 1E-09 80.5 5.2 37 24-60 2-39 (414)
227 PLN02927 antheraxanthin epoxid 97.7 4.4E-05 9.5E-10 84.4 4.8 36 20-55 79-114 (668)
228 PRK06854 adenylylsulfate reduc 97.6 4.7E-05 1E-09 84.4 5.0 39 21-59 10-50 (608)
229 PRK12814 putative NADPH-depend 97.6 5.2E-05 1.1E-09 84.8 5.3 42 21-62 192-233 (652)
230 PRK08071 L-aspartate oxidase; 97.6 5.1E-05 1.1E-09 82.5 5.0 40 21-61 2-41 (510)
231 PF01134 GIDA: Glucose inhibit 97.6 4.5E-05 9.7E-10 78.9 4.1 50 281-332 97-146 (392)
232 TIGR01438 TGR thioredoxin and 97.6 5.8E-05 1.3E-09 81.5 5.0 42 22-63 2-51 (484)
233 COG3075 GlpB Anaerobic glycero 97.6 5.6E-05 1.2E-09 74.7 4.1 56 280-337 259-317 (421)
234 PRK06263 sdhA succinate dehydr 97.6 6.2E-05 1.3E-09 82.5 4.8 53 279-332 134-191 (543)
235 PRK09231 fumarate reductase fl 97.6 6.4E-05 1.4E-09 83.0 4.9 41 21-61 3-45 (582)
236 PRK08275 putative oxidoreducta 97.6 6.5E-05 1.4E-09 82.5 4.9 54 278-332 136-194 (554)
237 TIGR00275 flavoprotein, HI0933 97.6 4.2E-05 9E-10 80.6 3.1 65 272-340 97-163 (400)
238 PRK05329 anaerobic glycerol-3- 97.6 7.4E-05 1.6E-09 78.8 4.9 51 280-332 260-312 (422)
239 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00011 2.4E-09 79.4 6.1 42 21-62 142-183 (485)
240 COG1053 SdhA Succinate dehydro 97.5 8.5E-05 1.9E-09 81.0 5.2 46 18-63 2-47 (562)
241 TIGR01176 fum_red_Fp fumarate 97.5 7.7E-05 1.7E-09 82.2 4.8 40 22-61 3-44 (580)
242 PRK08401 L-aspartate oxidase; 97.5 8.8E-05 1.9E-09 79.7 5.0 50 279-332 120-169 (466)
243 PRK08205 sdhA succinate dehydr 97.5 9.2E-05 2E-09 81.8 5.2 53 279-332 140-200 (583)
244 PRK09077 L-aspartate oxidase; 97.5 8.9E-05 1.9E-09 81.1 4.9 40 20-60 6-45 (536)
245 PF06039 Mqo: Malate:quinone o 97.5 0.00019 4E-09 74.8 6.5 60 272-333 170-239 (488)
246 PRK06912 acoL dihydrolipoamide 97.5 0.00011 2.5E-09 78.7 4.9 39 24-63 2-40 (458)
247 PF07992 Pyr_redox_2: Pyridine 97.5 0.00013 2.7E-09 68.7 4.7 33 24-56 1-33 (201)
248 COG2303 BetA Choline dehydroge 97.5 9.5E-05 2.1E-09 80.8 4.2 35 20-54 5-39 (542)
249 PRK12770 putative glutamate sy 97.4 0.00018 4E-09 74.3 5.5 41 22-62 18-58 (352)
250 PF00070 Pyr_redox: Pyridine n 97.4 0.00028 6.1E-09 56.3 5.0 34 25-58 2-35 (80)
251 PRK12771 putative glutamate sy 97.4 0.00025 5.4E-09 78.1 6.3 42 21-62 136-177 (564)
252 KOG0399 Glutamate synthase [Am 97.4 0.00019 4E-09 80.5 5.0 53 10-63 1774-1826(2142)
253 COG0493 GltD NADPH-dependent g 97.4 0.00022 4.8E-09 75.8 5.5 48 16-63 117-164 (457)
254 PRK06567 putative bifunctional 97.4 0.00026 5.7E-09 80.5 6.2 42 19-60 380-421 (1028)
255 KOG2415 Electron transfer flav 97.4 0.00016 3.6E-09 73.4 4.1 56 21-76 75-143 (621)
256 PRK07846 mycothione reductase; 97.3 0.00019 4.1E-09 76.8 4.8 40 22-64 1-40 (451)
257 TIGR01810 betA choline dehydro 97.3 0.00016 3.5E-09 79.0 4.3 33 24-56 1-34 (532)
258 TIGR02061 aprA adenosine phosp 97.3 0.00022 4.7E-09 78.9 5.1 34 24-57 1-38 (614)
259 TIGR03452 mycothione_red mycot 97.3 0.0002 4.4E-09 76.7 4.7 40 22-64 2-41 (452)
260 PRK07512 L-aspartate oxidase; 97.3 0.00018 3.9E-09 78.2 4.2 52 279-332 136-191 (513)
261 TIGR00136 gidA glucose-inhibit 97.3 0.00026 5.7E-09 77.1 4.9 38 23-60 1-38 (617)
262 KOG1335 Dihydrolipoamide dehyd 97.3 0.00026 5.7E-09 71.4 4.3 43 21-63 38-80 (506)
263 TIGR01811 sdhA_Bsu succinate d 97.3 0.00022 4.9E-09 78.9 4.2 36 25-60 1-36 (603)
264 PRK13800 putative oxidoreducta 97.2 0.0003 6.5E-09 81.6 5.1 36 21-56 12-47 (897)
265 PRK13984 putative oxidoreducta 97.2 0.00037 8E-09 77.5 5.6 43 20-62 281-323 (604)
266 PRK07845 flavoprotein disulfid 97.2 0.00033 7E-09 75.4 5.0 52 279-333 218-269 (466)
267 PRK08255 salicylyl-CoA 5-hydro 97.2 0.0003 6.4E-09 80.2 4.7 35 23-57 1-37 (765)
268 KOG2665 Predicted FAD-dependen 97.2 0.00034 7.5E-09 68.8 4.4 61 3-63 28-91 (453)
269 PTZ00188 adrenodoxin reductase 97.2 0.00048 1E-08 73.3 5.6 43 21-63 38-81 (506)
270 PLN02785 Protein HOTHEAD 97.2 0.00037 8E-09 76.8 4.7 35 21-56 54-88 (587)
271 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00043 9.3E-09 72.5 4.5 56 279-336 263-321 (419)
272 COG0445 GidA Flavin-dependent 96.9 0.00067 1.5E-08 71.7 3.9 35 20-54 2-36 (621)
273 KOG2404 Fumarate reductase, fl 96.8 0.0013 2.9E-08 65.0 4.3 39 24-62 11-49 (477)
274 COG0029 NadB Aspartate oxidase 96.7 0.0017 3.7E-08 68.1 4.4 33 24-57 9-41 (518)
275 COG4716 Myosin-crossreactive a 96.7 0.021 4.6E-07 57.8 11.7 43 21-63 21-67 (587)
276 PRK09897 hypothetical protein; 96.6 0.0023 5E-08 69.5 4.8 38 23-60 2-42 (534)
277 PRK09754 phenylpropionate diox 96.6 0.0027 5.8E-08 66.8 5.0 51 280-334 187-237 (396)
278 PRK09564 coenzyme A disulfide 96.5 0.0026 5.7E-08 67.8 4.4 52 279-334 191-242 (444)
279 KOG1238 Glucose dehydrogenase/ 96.4 0.0042 9E-08 67.3 5.4 39 19-57 54-93 (623)
280 KOG2311 NAD/FAD-utilizing prot 96.4 0.0034 7.4E-08 65.2 4.3 36 19-54 25-60 (679)
281 KOG4716 Thioredoxin reductase 96.4 0.0034 7.4E-08 62.5 4.1 36 18-53 15-50 (503)
282 PTZ00318 NADH dehydrogenase-li 96.4 0.0042 9E-08 66.0 5.1 48 280-334 229-276 (424)
283 COG0446 HcaD Uncharacterized N 96.3 0.004 8.7E-08 65.1 4.5 40 23-62 137-176 (415)
284 PRK13512 coenzyme A disulfide 96.1 0.006 1.3E-07 65.1 4.7 49 279-334 189-237 (438)
285 KOG2960 Protein involved in th 95.9 0.0026 5.7E-08 59.3 0.9 40 22-61 76-117 (328)
286 KOG3855 Monooxygenase involved 95.9 0.0098 2.1E-07 61.0 4.8 41 16-56 30-74 (481)
287 KOG0405 Pyridine nucleotide-di 95.9 0.0094 2E-07 59.8 4.4 43 21-63 19-61 (478)
288 COG1206 Gid NAD(FAD)-utilizing 95.8 0.0099 2.1E-07 59.2 4.4 40 22-61 3-42 (439)
289 TIGR02352 thiamin_ThiO glycine 95.7 0.032 7E-07 56.7 8.1 60 271-333 126-188 (337)
290 KOG0042 Glycerol-3-phosphate d 95.6 0.0067 1.5E-07 64.0 2.1 38 22-59 67-104 (680)
291 PF03721 UDPG_MGDP_dh_N: UDP-g 95.5 0.014 3.1E-07 54.6 4.1 33 24-56 2-34 (185)
292 TIGR03169 Nterm_to_SelD pyridi 95.3 0.018 3.9E-07 59.7 4.5 49 280-335 192-240 (364)
293 PF13454 NAD_binding_9: FAD-NA 95.2 0.023 5E-07 51.5 4.1 31 26-56 1-36 (156)
294 COG1252 Ndh NADH dehydrogenase 95.0 0.028 6.1E-07 58.7 4.8 46 279-331 209-255 (405)
295 PF02737 3HCDH_N: 3-hydroxyacy 94.9 0.031 6.8E-07 52.0 4.4 32 24-55 1-32 (180)
296 KOG2852 Possible oxidoreductas 94.8 0.018 4E-07 56.4 2.5 40 23-62 11-56 (380)
297 PRK09754 phenylpropionate diox 94.7 0.034 7.4E-07 58.4 4.6 39 23-61 145-183 (396)
298 COG2509 Uncharacterized FAD-de 94.7 0.089 1.9E-06 54.9 7.3 61 274-336 165-228 (486)
299 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.042 9.1E-07 49.9 4.1 32 24-55 1-32 (157)
300 PRK01438 murD UDP-N-acetylmura 94.4 0.06 1.3E-06 58.2 5.6 36 21-56 15-50 (480)
301 PF07156 Prenylcys_lyase: Pren 94.2 0.24 5.2E-06 51.4 9.3 113 206-335 68-184 (368)
302 COG4529 Uncharacterized protei 94.2 0.059 1.3E-06 56.8 4.7 41 22-63 1-45 (474)
303 PRK06249 2-dehydropantoate 2-r 94.1 0.067 1.4E-06 54.4 5.0 37 19-55 2-38 (313)
304 PRK04965 NADH:flavorubredoxin 94.1 0.064 1.4E-06 56.0 4.8 38 23-60 142-179 (377)
305 COG3634 AhpF Alkyl hydroperoxi 94.0 0.033 7.2E-07 55.9 2.5 39 21-61 210-248 (520)
306 PRK06129 3-hydroxyacyl-CoA deh 94.0 0.054 1.2E-06 54.9 4.0 33 24-56 4-36 (308)
307 PRK04965 NADH:flavorubredoxin 93.9 0.068 1.5E-06 55.8 4.8 53 280-335 184-236 (377)
308 TIGR03197 MnmC_Cterm tRNA U-34 93.9 0.12 2.7E-06 53.8 6.6 58 271-332 124-184 (381)
309 PF02558 ApbA: Ketopantoate re 93.8 0.083 1.8E-06 47.3 4.5 31 25-55 1-31 (151)
310 PF13434 K_oxygenase: L-lysine 93.8 0.044 9.6E-07 56.4 3.0 35 22-56 2-37 (341)
311 KOG1800 Ferredoxin/adrenodoxin 93.8 0.082 1.8E-06 53.9 4.7 43 22-64 20-64 (468)
312 PRK07251 pyridine nucleotide-d 93.7 0.087 1.9E-06 56.2 5.1 38 23-60 158-195 (438)
313 PRK05976 dihydrolipoamide dehy 93.6 0.078 1.7E-06 57.1 4.6 37 23-59 181-217 (472)
314 PRK02705 murD UDP-N-acetylmura 93.5 0.081 1.7E-06 56.8 4.5 34 24-57 2-35 (459)
315 TIGR01350 lipoamide_DH dihydro 93.5 0.088 1.9E-06 56.5 4.7 37 23-59 171-207 (461)
316 TIGR02053 MerA mercuric reduct 93.1 0.12 2.6E-06 55.5 5.0 38 23-60 167-204 (463)
317 PRK06370 mercuric reductase; V 93.0 0.12 2.7E-06 55.4 5.0 38 23-60 172-209 (463)
318 PRK09260 3-hydroxybutyryl-CoA 92.9 0.1 2.2E-06 52.4 3.9 33 24-56 3-35 (288)
319 PRK08293 3-hydroxybutyryl-CoA 92.9 0.13 2.7E-06 51.7 4.6 33 23-55 4-36 (287)
320 PRK11064 wecC UDP-N-acetyl-D-m 92.9 0.11 2.5E-06 54.9 4.4 34 23-56 4-37 (415)
321 PRK14106 murD UDP-N-acetylmura 92.9 0.14 3.1E-06 54.7 5.2 36 20-55 3-38 (450)
322 PRK14989 nitrite reductase sub 92.8 0.13 2.9E-06 59.3 5.1 54 280-334 188-241 (847)
323 PRK13512 coenzyme A disulfide 92.8 0.12 2.7E-06 55.1 4.5 37 23-59 149-185 (438)
324 TIGR01421 gluta_reduc_1 glutat 92.8 0.13 2.8E-06 55.2 4.7 37 23-59 167-203 (450)
325 PRK06416 dihydrolipoamide dehy 92.8 0.14 3.1E-06 54.9 5.0 38 23-60 173-210 (462)
326 PRK06912 acoL dihydrolipoamide 92.7 0.14 3E-06 55.0 4.8 37 23-59 171-207 (458)
327 PRK06467 dihydrolipoamide dehy 92.7 0.15 3.3E-06 54.9 5.1 38 23-60 175-212 (471)
328 COG0569 TrkA K+ transport syst 92.6 0.13 2.9E-06 49.6 4.1 32 24-55 2-33 (225)
329 TIGR03377 glycerol3P_GlpA glyc 92.6 0.33 7.2E-06 52.9 7.7 59 271-332 118-184 (516)
330 PRK06292 dihydrolipoamide dehy 92.5 0.15 3.3E-06 54.6 4.9 37 23-59 170-206 (460)
331 PRK06115 dihydrolipoamide dehy 92.5 0.15 3.2E-06 54.9 4.8 37 23-59 175-211 (466)
332 PRK07846 mycothione reductase; 92.5 0.15 3.2E-06 54.7 4.8 36 23-58 167-202 (451)
333 PRK07819 3-hydroxybutyryl-CoA 92.5 0.15 3.3E-06 51.1 4.6 33 24-56 7-39 (286)
334 PRK07818 dihydrolipoamide dehy 92.5 0.14 3.1E-06 55.0 4.7 37 23-59 173-209 (466)
335 TIGR02374 nitri_red_nirB nitri 92.5 0.12 2.7E-06 59.2 4.3 53 280-335 183-235 (785)
336 TIGR03378 glycerol3P_GlpB glyc 92.4 0.47 1E-05 50.0 8.1 33 23-55 1-33 (419)
337 PRK04148 hypothetical protein; 92.4 0.12 2.6E-06 45.4 3.1 33 23-56 18-50 (134)
338 TIGR03385 CoA_CoA_reduc CoA-di 92.3 0.16 3.4E-06 54.0 4.6 36 23-58 138-173 (427)
339 PRK07530 3-hydroxybutyryl-CoA 92.3 0.19 4.1E-06 50.5 5.0 33 23-55 5-37 (292)
340 PRK05249 soluble pyridine nucl 92.3 0.18 4E-06 54.0 5.1 38 23-60 176-213 (461)
341 PRK07066 3-hydroxybutyryl-CoA 92.2 0.15 3.4E-06 51.8 4.2 33 23-55 8-40 (321)
342 TIGR03862 flavo_PP4765 unchara 91.9 0.97 2.1E-05 47.1 9.6 57 271-332 77-135 (376)
343 PRK06327 dihydrolipoamide dehy 91.8 0.22 4.7E-06 53.8 5.0 38 23-60 184-221 (475)
344 COG1004 Ugd Predicted UDP-gluc 91.8 0.18 3.9E-06 52.0 4.0 32 24-55 2-33 (414)
345 PRK05808 3-hydroxybutyryl-CoA 91.7 0.2 4.2E-06 50.1 4.3 33 24-56 5-37 (282)
346 COG0686 Ald Alanine dehydrogen 91.7 0.14 3E-06 50.9 3.0 43 23-65 169-219 (371)
347 PF05834 Lycopene_cycl: Lycope 91.7 9.6 0.00021 39.6 17.1 50 279-332 87-136 (374)
348 TIGR02374 nitri_red_nirB nitri 91.7 0.19 4.1E-06 57.7 4.6 37 23-59 141-177 (785)
349 PRK06522 2-dehydropantoate 2-r 91.7 0.2 4.4E-06 50.3 4.3 32 24-55 2-33 (304)
350 PF13738 Pyr_redox_3: Pyridine 91.7 0.52 1.1E-05 44.1 6.9 52 279-333 82-133 (203)
351 TIGR03452 mycothione_red mycot 91.7 0.22 4.7E-06 53.4 4.8 37 23-59 170-206 (452)
352 PRK06035 3-hydroxyacyl-CoA deh 91.6 0.19 4.1E-06 50.5 4.0 34 23-56 4-37 (291)
353 TIGR03140 AhpF alkyl hydropero 91.4 0.21 4.7E-06 54.4 4.5 36 23-58 353-388 (515)
354 cd05292 LDH_2 A subgroup of L- 91.4 0.24 5.3E-06 50.2 4.5 32 24-55 2-35 (308)
355 PRK09564 coenzyme A disulfide 91.2 0.26 5.7E-06 52.5 4.8 37 23-59 150-186 (444)
356 PRK07845 flavoprotein disulfid 91.1 0.3 6.4E-06 52.6 5.1 39 23-61 178-216 (466)
357 PRK05708 2-dehydropantoate 2-r 91.0 0.27 5.8E-06 49.8 4.4 33 23-55 3-35 (305)
358 TIGR01316 gltA glutamate synth 90.9 0.27 5.8E-06 52.7 4.5 34 23-56 273-306 (449)
359 TIGR03026 NDP-sugDHase nucleot 90.8 0.24 5.2E-06 52.4 4.0 33 24-56 2-34 (411)
360 TIGR01424 gluta_reduc_2 glutat 90.8 0.29 6.2E-06 52.4 4.7 36 23-58 167-202 (446)
361 PRK10262 thioredoxin reductase 90.7 0.3 6.5E-06 49.6 4.6 35 23-57 147-181 (321)
362 PTZ00153 lipoamide dehydrogena 90.7 0.3 6.5E-06 54.7 4.8 37 23-59 313-349 (659)
363 PRK05257 malate:quinone oxidor 90.7 0.63 1.4E-05 50.4 7.2 63 269-333 170-241 (494)
364 cd01080 NAD_bind_m-THF_DH_Cycl 90.7 0.41 8.8E-06 44.0 4.9 34 21-54 43-77 (168)
365 PRK06130 3-hydroxybutyryl-CoA 90.7 0.28 6E-06 49.8 4.2 33 23-55 5-37 (311)
366 PRK12921 2-dehydropantoate 2-r 90.7 0.28 6.1E-06 49.4 4.2 30 24-53 2-31 (305)
367 PTZ00058 glutathione reductase 90.6 0.28 6.2E-06 53.9 4.4 37 23-59 238-274 (561)
368 PRK14989 nitrite reductase sub 90.5 0.28 6.1E-06 56.6 4.6 36 24-59 147-182 (847)
369 PRK08229 2-dehydropantoate 2-r 90.5 0.26 5.7E-06 50.5 4.0 32 24-55 4-35 (341)
370 TIGR01763 MalateDH_bact malate 90.4 0.36 7.8E-06 48.9 4.7 34 23-56 2-36 (305)
371 PF00890 FAD_binding_2: FAD bi 90.3 0.57 1.2E-05 49.4 6.4 36 24-59 1-36 (417)
372 PRK15317 alkyl hydroperoxide r 90.3 0.31 6.7E-06 53.2 4.5 35 23-57 352-386 (517)
373 TIGR01320 mal_quin_oxido malat 90.3 0.8 1.7E-05 49.5 7.6 41 23-63 1-43 (483)
374 PLN02545 3-hydroxybutyryl-CoA 90.3 0.36 7.7E-06 48.6 4.6 32 24-55 6-37 (295)
375 PF01262 AlaDh_PNT_C: Alanine 90.2 0.4 8.6E-06 44.0 4.4 33 23-55 21-53 (168)
376 TIGR03143 AhpF_homolog putativ 90.2 0.32 6.9E-06 53.6 4.4 35 23-57 144-178 (555)
377 COG1249 Lpd Pyruvate/2-oxoglut 90.1 0.37 8E-06 51.5 4.7 38 23-60 174-211 (454)
378 PLN02507 glutathione reductase 90.1 0.35 7.6E-06 52.5 4.6 36 23-58 204-239 (499)
379 PRK08010 pyridine nucleotide-d 90.1 0.43 9.3E-06 50.9 5.2 38 23-60 159-196 (441)
380 PRK06116 glutathione reductase 89.9 0.39 8.4E-06 51.4 4.7 36 23-58 168-203 (450)
381 TIGR01292 TRX_reduct thioredox 89.8 0.39 8.4E-06 47.8 4.4 35 23-57 142-176 (300)
382 PRK12770 putative glutamate sy 89.8 0.36 7.7E-06 49.9 4.2 34 23-56 173-207 (352)
383 PRK07417 arogenate dehydrogena 89.8 0.36 7.9E-06 48.1 4.1 32 24-55 2-33 (279)
384 PRK00094 gpsA NAD(P)H-dependen 89.6 0.43 9.3E-06 48.5 4.6 32 24-55 3-34 (325)
385 PRK12831 putative oxidoreducta 89.6 0.39 8.5E-06 51.6 4.5 34 23-56 282-315 (464)
386 PLN02353 probable UDP-glucose 89.5 0.39 8.4E-06 51.7 4.3 34 23-56 2-37 (473)
387 PRK14619 NAD(P)H-dependent gly 89.5 0.47 1E-05 48.1 4.7 33 23-55 5-37 (308)
388 PRK11199 tyrA bifunctional cho 89.4 0.5 1.1E-05 49.3 5.0 41 15-55 91-132 (374)
389 PRK13748 putative mercuric red 89.4 0.45 9.7E-06 52.5 4.9 34 23-56 271-304 (561)
390 PF02254 TrkA_N: TrkA-N domain 89.2 0.58 1.3E-05 39.6 4.4 31 25-55 1-31 (116)
391 KOG3851 Sulfide:quinone oxidor 89.1 0.37 8E-06 48.1 3.5 38 19-56 36-75 (446)
392 PRK06719 precorrin-2 dehydroge 89.1 0.54 1.2E-05 42.7 4.4 36 18-53 9-44 (157)
393 PLN02546 glutathione reductase 89.1 0.49 1.1E-05 52.1 4.8 37 23-59 253-289 (558)
394 PF03446 NAD_binding_2: NAD bi 89.0 0.54 1.2E-05 42.8 4.3 33 23-55 2-34 (163)
395 KOG0404 Thioredoxin reductase 89.0 0.42 9.1E-06 45.4 3.5 42 22-63 8-53 (322)
396 PRK14694 putative mercuric red 89.0 0.53 1.1E-05 50.7 4.9 33 23-55 179-211 (468)
397 PRK00141 murD UDP-N-acetylmura 88.9 0.55 1.2E-05 50.6 5.0 45 9-55 4-48 (473)
398 TIGR00518 alaDH alanine dehydr 88.8 0.51 1.1E-05 49.2 4.5 33 23-55 168-200 (370)
399 PRK06718 precorrin-2 dehydroge 88.8 0.57 1.2E-05 44.4 4.4 37 18-54 6-42 (202)
400 PF13241 NAD_binding_7: Putati 88.6 0.37 8E-06 40.3 2.7 37 19-55 4-40 (103)
401 TIGR01470 cysG_Nterm siroheme 88.6 0.58 1.3E-05 44.5 4.4 37 19-55 6-42 (205)
402 COG1748 LYS9 Saccharopine dehy 88.5 0.55 1.2E-05 48.8 4.5 32 23-54 2-34 (389)
403 PRK14618 NAD(P)H-dependent gly 88.5 0.64 1.4E-05 47.5 5.0 33 23-55 5-37 (328)
404 PRK14620 NAD(P)H-dependent gly 88.4 0.57 1.2E-05 47.8 4.5 32 24-55 2-33 (326)
405 KOG2304 3-hydroxyacyl-CoA dehy 88.2 0.44 9.5E-06 45.3 3.2 35 22-56 11-45 (298)
406 PRK14727 putative mercuric red 88.2 0.64 1.4E-05 50.2 5.0 33 23-55 189-221 (479)
407 PRK15057 UDP-glucose 6-dehydro 88.0 0.56 1.2E-05 49.2 4.2 32 24-56 2-33 (388)
408 TIGR01915 npdG NADPH-dependent 88.0 0.64 1.4E-05 44.6 4.3 32 24-55 2-34 (219)
409 cd01075 NAD_bind_Leu_Phe_Val_D 87.9 0.98 2.1E-05 42.7 5.5 37 19-55 25-61 (200)
410 PF13478 XdhC_C: XdhC Rossmann 87.9 0.59 1.3E-05 41.3 3.7 32 25-56 1-32 (136)
411 PLN02695 GDP-D-mannose-3',5'-e 87.9 0.88 1.9E-05 47.3 5.6 42 14-55 13-55 (370)
412 PRK06134 putative FAD-binding 87.8 1.5 3.3E-05 48.5 7.8 52 279-332 217-272 (581)
413 PRK12409 D-amino acid dehydrog 87.7 2.5 5.3E-05 44.5 9.0 61 270-333 185-253 (410)
414 TIGR02354 thiF_fam2 thiamine b 87.7 0.8 1.7E-05 43.4 4.7 33 22-54 21-54 (200)
415 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.5 0.57 1.2E-05 50.8 4.0 33 24-56 7-39 (503)
416 PRK07531 bifunctional 3-hydrox 87.5 0.59 1.3E-05 50.7 4.1 32 24-55 6-37 (495)
417 PF01134 GIDA: Glucose inhibit 87.4 1.7 3.7E-05 45.4 7.3 28 24-51 1-28 (392)
418 PRK07121 hypothetical protein; 87.4 1.5 3.3E-05 47.4 7.4 54 278-332 176-233 (492)
419 COG3486 IucD Lysine/ornithine 87.4 0.7 1.5E-05 47.8 4.3 39 19-57 2-41 (436)
420 PRK15116 sulfur acceptor prote 87.3 0.83 1.8E-05 45.2 4.7 34 22-55 30-64 (268)
421 cd05291 HicDH_like L-2-hydroxy 87.3 0.75 1.6E-05 46.6 4.5 33 24-56 2-36 (306)
422 PTZ00052 thioredoxin reductase 87.3 0.74 1.6E-05 50.0 4.8 31 24-54 184-214 (499)
423 PF10727 Rossmann-like: Rossma 87.1 0.6 1.3E-05 40.8 3.2 38 18-55 6-43 (127)
424 PRK11749 dihydropyrimidine deh 87.1 0.71 1.5E-05 49.5 4.5 34 23-56 274-308 (457)
425 TIGR01816 sdhA_forward succina 87.0 2.5 5.4E-05 46.7 8.8 58 273-332 112-175 (565)
426 PRK01710 murD UDP-N-acetylmura 87.0 0.74 1.6E-05 49.4 4.5 32 24-55 16-47 (458)
427 TIGR01438 TGR thioredoxin and 86.8 0.7 1.5E-05 50.0 4.2 32 23-54 181-212 (484)
428 PF01488 Shikimate_DH: Shikima 86.7 1.1 2.3E-05 39.5 4.6 33 22-54 12-45 (135)
429 PRK04308 murD UDP-N-acetylmura 86.7 1 2.2E-05 48.2 5.3 35 23-57 6-40 (445)
430 PLN02657 3,8-divinyl protochlo 86.6 1.4 3E-05 46.2 6.3 42 14-55 52-94 (390)
431 TIGR01505 tartro_sem_red 2-hyd 86.4 0.78 1.7E-05 46.0 4.1 31 25-55 2-32 (291)
432 PRK13339 malate:quinone oxidor 86.4 2.1 4.6E-05 46.4 7.6 63 269-333 171-242 (497)
433 cd01339 LDH-like_MDH L-lactate 86.4 0.78 1.7E-05 46.3 4.1 31 25-55 1-32 (300)
434 PRK11730 fadB multifunctional 86.4 0.67 1.5E-05 52.6 3.9 34 23-56 314-347 (715)
435 PRK08268 3-hydroxy-acyl-CoA de 86.3 0.83 1.8E-05 49.7 4.5 34 23-56 8-41 (507)
436 TIGR01423 trypano_reduc trypan 86.2 0.87 1.9E-05 49.3 4.6 37 23-59 188-227 (486)
437 PRK02472 murD UDP-N-acetylmura 86.2 0.98 2.1E-05 48.2 4.9 33 23-55 6-38 (447)
438 PRK12843 putative FAD-binding 86.1 2.2 4.8E-05 47.3 7.8 52 279-332 221-276 (578)
439 PTZ00318 NADH dehydrogenase-li 86.0 0.95 2.1E-05 48.1 4.7 36 24-59 175-224 (424)
440 PRK03803 murD UDP-N-acetylmura 86.0 1 2.2E-05 48.2 4.9 39 17-55 1-39 (448)
441 PRK06223 malate dehydrogenase; 85.9 1 2.2E-05 45.5 4.6 34 23-56 3-37 (307)
442 PRK04690 murD UDP-N-acetylmura 85.6 0.92 2E-05 48.9 4.3 34 23-56 9-42 (468)
443 TIGR02437 FadB fatty oxidation 85.6 0.88 1.9E-05 51.6 4.3 33 23-55 314-346 (714)
444 PRK15461 NADH-dependent gamma- 85.5 0.92 2E-05 45.7 4.1 32 24-55 3-34 (296)
445 KOG3923 D-aspartate oxidase [A 85.4 0.49 1.1E-05 46.9 1.9 26 21-46 2-27 (342)
446 PRK05329 anaerobic glycerol-3- 85.4 3 6.6E-05 44.2 8.0 34 22-55 2-35 (422)
447 PRK03369 murD UDP-N-acetylmura 85.1 1 2.2E-05 48.8 4.5 32 24-55 14-45 (488)
448 PRK10157 putative oxidoreducta 85.0 3.1 6.8E-05 44.2 8.0 51 279-332 108-158 (428)
449 PRK06481 fumarate reductase fl 85.0 2.9 6.2E-05 45.5 7.9 51 280-332 191-245 (506)
450 cd01065 NAD_bind_Shikimate_DH 84.9 1.6 3.4E-05 39.0 5.0 34 22-55 19-53 (155)
451 cd05191 NAD_bind_amino_acid_DH 84.8 2 4.3E-05 34.5 5.0 32 22-53 23-55 (86)
452 COG2509 Uncharacterized FAD-de 84.5 0.92 2E-05 47.6 3.5 40 18-57 14-58 (486)
453 PLN02256 arogenate dehydrogena 84.5 1.4 2.9E-05 44.7 4.8 35 21-55 35-69 (304)
454 PRK09424 pntA NAD(P) transhydr 84.5 1 2.2E-05 48.8 4.1 34 22-55 165-198 (509)
455 PRK12778 putative bifunctional 84.5 1 2.2E-05 51.6 4.3 34 23-56 571-605 (752)
456 PRK07831 short chain dehydroge 84.4 1.8 3.9E-05 42.3 5.5 34 22-55 17-52 (262)
457 COG0771 MurD UDP-N-acetylmuram 84.3 1.1 2.4E-05 47.5 4.1 36 22-57 7-42 (448)
458 COG1250 FadB 3-hydroxyacyl-CoA 84.3 1.1 2.4E-05 45.2 3.9 32 23-54 4-35 (307)
459 COG0287 TyrA Prephenate dehydr 84.3 0.88 1.9E-05 45.4 3.2 43 23-65 4-46 (279)
460 PRK11559 garR tartronate semia 84.3 1.2 2.6E-05 44.6 4.3 32 24-55 4-35 (296)
461 COG1893 ApbA Ketopantoate redu 83.8 1.1 2.3E-05 45.5 3.6 33 24-56 2-34 (307)
462 TIGR02441 fa_ox_alpha_mit fatt 83.8 1 2.3E-05 51.2 3.9 34 23-56 336-369 (737)
463 PRK06175 L-aspartate oxidase; 83.5 4.2 9.1E-05 43.3 8.2 39 21-60 3-41 (433)
464 PRK12549 shikimate 5-dehydroge 83.4 1.5 3.2E-05 43.9 4.5 33 23-55 128-161 (284)
465 cd00401 AdoHcyase S-adenosyl-L 83.4 1.4 3E-05 46.5 4.4 34 22-55 202-235 (413)
466 PRK00683 murD UDP-N-acetylmura 83.4 1.3 2.8E-05 46.9 4.3 34 23-56 4-37 (418)
467 cd01078 NAD_bind_H4MPT_DH NADP 83.4 2 4.3E-05 40.2 5.1 34 21-54 27-61 (194)
468 PLN02572 UDP-sulfoquinovose sy 83.2 2.2 4.7E-05 45.6 5.9 32 23-54 48-80 (442)
469 PRK08306 dipicolinate synthase 83.2 1.5 3.3E-05 44.2 4.5 34 22-55 152-185 (296)
470 TIGR02440 FadJ fatty oxidation 83.2 1.2 2.5E-05 50.6 4.0 33 23-55 305-338 (699)
471 PLN02712 arogenate dehydrogena 83.1 1.9 4.2E-05 48.4 5.7 35 21-55 51-85 (667)
472 PRK08773 2-octaprenyl-3-methyl 83.1 3.9 8.5E-05 42.7 7.7 38 20-57 4-41 (392)
473 TIGR01813 flavo_cyto_c flavocy 83.1 3.6 7.7E-05 43.8 7.5 38 24-61 1-39 (439)
474 PRK04176 ribulose-1,5-biphosph 83.0 3.9 8.4E-05 40.3 7.2 53 279-332 104-167 (257)
475 TIGR02964 xanthine_xdhC xanthi 83.0 1.8 3.9E-05 42.3 4.8 36 21-56 99-134 (246)
476 PRK07502 cyclohexadienyl dehyd 82.8 1.6 3.4E-05 44.2 4.5 33 23-55 7-41 (307)
477 PRK07688 thiamine/molybdopteri 82.8 1.7 3.7E-05 44.7 4.7 33 22-54 24-57 (339)
478 PRK12835 3-ketosteroid-delta-1 82.8 3.3 7.1E-05 46.0 7.3 54 278-332 212-269 (584)
479 PRK00066 ldh L-lactate dehydro 82.7 2 4.4E-05 43.6 5.2 35 21-55 5-41 (315)
480 PTZ00082 L-lactate dehydrogena 82.6 1.7 3.7E-05 44.3 4.6 35 23-57 7-42 (321)
481 PRK09496 trkA potassium transp 82.4 1.4 3E-05 47.1 4.0 33 24-56 2-34 (453)
482 PRK05675 sdhA succinate dehydr 82.4 4.7 0.0001 44.6 8.3 60 272-332 118-183 (570)
483 TIGR00872 gnd_rel 6-phosphoglu 82.3 1.6 3.6E-05 43.9 4.3 32 24-55 2-33 (298)
484 TIGR01812 sdhA_frdA_Gneg succi 82.2 5.6 0.00012 43.9 8.8 38 24-61 1-38 (566)
485 PTZ00142 6-phosphogluconate de 82.1 1.4 3.1E-05 47.3 4.0 34 23-56 2-35 (470)
486 PRK02006 murD UDP-N-acetylmura 81.9 1.5 3.4E-05 47.5 4.3 33 23-55 8-40 (498)
487 PRK06847 hypothetical protein; 81.9 5.1 0.00011 41.4 8.0 37 21-57 3-39 (375)
488 PLN02464 glycerol-3-phosphate 81.9 5.2 0.00011 44.8 8.5 41 20-60 69-109 (627)
489 PRK11154 fadJ multifunctional 81.8 1.5 3.3E-05 49.8 4.3 33 23-55 310-343 (708)
490 PF00899 ThiF: ThiF family; I 81.7 1.8 3.9E-05 37.9 3.9 32 23-54 3-35 (135)
491 cd01487 E1_ThiF_like E1_ThiF_l 81.6 2 4.4E-05 39.6 4.3 31 24-54 1-32 (174)
492 PRK12844 3-ketosteroid-delta-1 81.6 4.1 9E-05 44.9 7.5 53 278-332 207-263 (557)
493 PLN02172 flavin-containing mon 81.5 1.4 3.1E-05 47.3 3.8 34 22-55 204-237 (461)
494 TIGR00507 aroE shikimate 5-deh 81.4 1.9 4.2E-05 42.7 4.4 32 23-54 118-149 (270)
495 cd05293 LDH_1 A subgroup of L- 81.3 2.3 5E-05 43.2 5.0 35 21-55 2-38 (312)
496 TIGR02032 GG-red-SF geranylger 81.3 5.4 0.00012 39.3 7.7 51 279-332 91-142 (295)
497 COG0665 DadA Glycine/D-amino a 81.2 5 0.00011 41.5 7.7 40 20-59 2-41 (387)
498 PRK05945 sdhA succinate dehydr 81.1 6.6 0.00014 43.5 8.9 40 21-60 2-43 (575)
499 PRK12475 thiamine/molybdopteri 81.1 2 4.4E-05 44.1 4.5 33 22-54 24-57 (338)
500 PRK00421 murC UDP-N-acetylmura 81.0 1.6 3.4E-05 46.9 3.9 34 23-56 8-42 (461)
No 1
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-72 Score=551.23 Aligned_cols=436 Identities=34% Similarity=0.576 Sum_probs=346.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc--------chhhhhc---cCCCCCC------
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPSS------ 81 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~--------~~~~~~~---~~~~~~~------ 81 (523)
.|++|||||||||+.++++|++.+|+|.+|||||+|+||||.|++|++. .+.+..+ +..+++.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 5688999999999999999999999999999999999999999999987 3322321 1111110
Q ss_pred ----CCCCCccccceecc---------------ccccccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccc
Q 009881 82 ----VCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (523)
Q Consensus 82 ----~~~~~~~~~~~~~~---------------~~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~ 142 (523)
......+.+++... .+...+.+..|+|+|||. |+++|++|.++++|+++++.+|.||+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 01122333333320 011122346899999999 9999999999999999999999999999
Q ss_pred cceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChh
Q 009881 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (523)
Q Consensus 143 ~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~ 222 (523)
++.+..+ +|++.+|||+|+|+|+++.|++.|||+||||+++|.+|..+. ..+...+..+.||.|||++++++++
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9988775 889999999999999999999999999999999999985321 1122345677899999999999999
Q ss_pred HHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCce
Q 009881 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (523)
Q Consensus 223 l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V 302 (523)
++.+++|+|+|..+++ .++.+|+.+.+.|+.|+||||+++ |+||.||.|||+|+|||+|||+||.|+|+++|
T Consensus 238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 9999999999976543 478999999999999999999876 99999999999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCc
Q 009881 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN 382 (523)
Q Consensus 303 ~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~ 382 (523)
+.|..|++.+++..+..+.|+++.|+++|+.|.+. |... ... ....+++|+++|+++++......
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~-------------~~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSR-------------VQLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-ccc-------------cchhhcceeEEecCccccchhHH
Confidence 99999865554444444789999999999999987 4321 211 12347999999999998654322
Q ss_pred ---eEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009881 383 ---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459 (523)
Q Consensus 383 ---~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 459 (523)
.++..++.. + ....+++++.+++++.||+|.|++|+| +..+..+.++++..+.+++.. +.
T Consensus 375 q~~~ll~~~~~e-p--g~~avr~iel~~~t~tc~kg~yLvhlT--~~~s~~~~ed~~S~~~kif~t------------~~ 437 (547)
T KOG4405|consen 375 QQLSLLSLLAVE-P--GAMAVRLIELCSSTMTCPKGTYLVHLT--CLSSKTAREDLESDVVKIFTT------------EI 437 (547)
T ss_pred hhhhhhhccccC-c--chhhHHHHHhhcccccCccceEEEEee--cccCcccccchhhhHHHHhhh------------hh
Confidence 233444332 1 245688999999999999999999998 444458899999999999962 11
Q ss_pred cccccCCcceEEEEEEEeecccccccccccCChhhhcccceEeeeccCcee
Q 009881 460 EDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDF 510 (523)
Q Consensus 460 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (523)
.+ |..||++||++||++++.+..+.+ .+|.+| |.|.||+...
T Consensus 438 ~~-E~~kp~llw~~yf~~~~~s~~s~s--~~~~nv------yv~~~pD~nL 479 (547)
T KOG4405|consen 438 KN-ETSKPRLLWALYFTMRDSSVISRS--PLAENV------YVCPPPDCNL 479 (547)
T ss_pred cc-ccccceehHHHHhhHHhhcccccC--CCCCce------EECCCCCCCc
Confidence 11 336899999999999987765544 899999 9999998653
No 2
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=6.5e-70 Score=563.34 Aligned_cols=372 Identities=35% Similarity=0.647 Sum_probs=289.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (523)
++++|||||+|||+.++++|++||++|++|||+|+|++|||.+++++++++.+|+...... ..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~ 63 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP 63 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence 4678999999999999999999999999999999999999999999999998898654210 00
Q ss_pred cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (523)
Q Consensus 99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L 178 (523)
..+ ...|+|+|||. |++++++|+|+++|+++++.||+||+.++++|++. +|++++||++++|+|+++.+++.+||+|
T Consensus 64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 112 35799999998 99999999999999999999999999999999886 8999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (523)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l 258 (523)
||||+++.++.+..+... + ..+....||.+++++|++++++++++.|+++|...+.. -..++.+++.++++|+
T Consensus 141 mkFl~~v~~~~~~~~~~~---~-~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTH---K-GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGS---T-TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchh---h-ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence 999999998854322110 1 11344689999999999999999999999998643221 1135789999999999
Q ss_pred HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009881 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (523)
Q Consensus 259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~ 338 (523)
.|+|+||++ +|+||+||.|||+|+|||+||++||+|+||++|++|..++ +|++++|. ++|++++|++||++|+|.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~- 288 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL- 288 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence 999999986 4999999999999999999999999999999999999974 68899997 499999999999999876
Q ss_pred CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC--CceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCc
Q 009881 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (523)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~ 416 (523)
|+- ....++++|+|+|+++|+++.. ....+++|+.+.+ ..++||++++|+++++||+|+
T Consensus 289 p~~-----------------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~ 349 (438)
T PF00996_consen 289 PEK-----------------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ 349 (438)
T ss_dssp GCG-----------------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred ccc-----------------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence 321 0124689999999999998643 3456779987654 356799999999999999999
Q ss_pred EEEEEEEeeccccchHHHHHHHHHHH
Q 009881 417 FVLYFSALCDEVNQGKKLLHAALSAL 442 (523)
Q Consensus 417 ~vi~~st~~~~~~~~~~~l~~~~~~l 442 (523)
||+|+||..++ ++++++|+++++.|
T Consensus 350 yi~~~St~~~t-~~p~~eL~~~l~lL 374 (438)
T PF00996_consen 350 YIAYVSTTVET-SNPEEELEPALELL 374 (438)
T ss_dssp EEEEEEEEE-S-S-HHHHTHHHHHTT
T ss_pred EEEEEEeccCC-CCcHHHHHHHHHhh
Confidence 99999998765 58999999999844
No 3
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=1.9e-63 Score=522.01 Aligned_cols=375 Identities=29% Similarity=0.527 Sum_probs=315.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (523)
++.+|||||||||++||++|++|+++|++|+|+|+|++|||+++|++++++..|+...... .
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~------------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP------------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCC------------------c
Confidence 3567999999999999999999999999999999999999999999998865555332110 0
Q ss_pred cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (523)
Q Consensus 99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L 178 (523)
+.+ ...|.|++||. |++++++|.++++|+++++.+|+||+.+++.|++..+|+++++|+++.++|+++.+++.+||++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 112 24689999996 9999999999999999999999999999999987448999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (523)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l 258 (523)
|||++++.++....+... + ..++...|+.+|++++++++.+++++.+++++...+ +. .+.++.+++.++++|+
T Consensus 141 ~kfl~~v~~~~~~~~~~~---~-~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~y~ 213 (443)
T PTZ00363 141 KNFLQYVSNYDENDPETH---K-GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKLYM 213 (443)
T ss_pred HHHHHHHHhhccCChhhh---c-ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHHHH
Confidence 999999987754221110 0 011335899999999999999999998888775211 00 1135778899999999
Q ss_pred HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009881 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (523)
Q Consensus 259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~ 338 (523)
.|+++||.+ +++||+||+++|+|+|||.++++||+|+|+++|++|..++ ++++++|++++|++++|++||++|++.
T Consensus 214 ~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~~- 289 (443)
T PTZ00363 214 DSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSYF- 289 (443)
T ss_pred HHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECcccc-
Confidence 999999964 4889999999999999999999999999999999998873 578889999999999999999999876
Q ss_pred CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCc
Q 009881 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (523)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~ 416 (523)
|... ...++|+|+|||+++|+... .+..+++||+.+++. .+.||++++|+++++||+|+
T Consensus 290 p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~ 350 (443)
T PTZ00363 290 PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK 350 (443)
T ss_pred cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence 3210 13678999999999999653 245689999988753 56799999999999999999
Q ss_pred EEEEEEEeeccccchHHHHHHHHHHHHh
Q 009881 417 FVLYFSALCDEVNQGKKLLHAALSALQK 444 (523)
Q Consensus 417 ~vi~~st~~~~~~~~~~~l~~~~~~l~~ 444 (523)
||+|+||.+++ .+++++|+++++.|+.
T Consensus 351 ~i~~~st~~~t-~~~~~~l~~~~~~l~~ 377 (443)
T PTZ00363 351 YIAIISTTVET-NNPEKEIEPALKLLGP 377 (443)
T ss_pred EEEEEEEecCC-CCHHHHHHHHHHHhcc
Confidence 99999998876 5999999999999995
No 4
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-55 Score=433.92 Aligned_cols=370 Identities=31% Similarity=0.538 Sum_probs=308.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (523)
+.+|||||+|||+.+++.+++||++|++|+|+|+|++|||-.+|+++.++..|+....... .+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~ 64 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE 64 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence 3459999999999999999999999999999999999999999999988888887542110 01
Q ss_pred ccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHH
Q 009881 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (523)
Q Consensus 100 ~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~ 179 (523)
. ....|.|++||. |+++++.++++.+|++.++.+|++|+.+...|+|. +|++++||.++.++|+++.+++.+||++|
T Consensus 65 ~-~~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 65 K-LGRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred c-cccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 1 124689999998 99999999999999999999999999999999987 77999999999999999999999999999
Q ss_pred HHHHHHHhhcccCcccccccccccc-ccC-CcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHH
Q 009881 180 RFFKLVQGHLSLDESEENNVRISEE-DLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (523)
Q Consensus 180 ~fl~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~ 257 (523)
||+.++.++.++.+.. +.. +.. .++.+++.++++....+.+..|++++...+ .. -..++.+++.++++|
T Consensus 142 kFl~~V~n~~e~~~~~------~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd--~~-ld~p~~~~~~ri~~Y 212 (440)
T KOG1439|consen 142 KFLKFVLNYDEEDPKT------WQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDD--SY-LDQPAKETLERILLY 212 (440)
T ss_pred HHHHHHhhhhhhcccc------ccccccccchHHHHHHHhcccccceeeeeeeeEEEecc--hh-ccCccHHHHHHHHHH
Confidence 9999999886543221 222 232 389999999999999999988877765322 11 124678999999999
Q ss_pred HHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009881 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (523)
Q Consensus 258 l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~ 337 (523)
++|+++||+.+ ++||+||.|||+|+|||.+|+.||+|+||.++.+|..++ +|++++|+ ..++..+|+.+|++|+|.
T Consensus 213 ~~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~ 288 (440)
T KOG1439|consen 213 VRSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF 288 (440)
T ss_pred HHHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence 99999999765 899999999999999999999999999999999998854 68888887 466778899999999886
Q ss_pred CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC--CCCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCC
Q 009881 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (523)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G 415 (523)
++- ....+++.|++||+++|... +.+.++++||+.+.+ ..+.|||..+|+....||+|
T Consensus 289 -~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG 348 (440)
T KOG1439|consen 289 -PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEG 348 (440)
T ss_pred -hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCc
Confidence 221 01245799999999998653 345678888877665 36789999999999999999
Q ss_pred cEEEEEEEeeccccchHHHHHHHHHHHH
Q 009881 416 MFVLYFSALCDEVNQGKKLLHAALSALQ 443 (523)
Q Consensus 416 ~~vi~~st~~~~~~~~~~~l~~~~~~l~ 443 (523)
+||.|+||..++ ..++..+.++++.|-
T Consensus 349 ~yia~vsT~~Et-~~pE~ei~~~lellg 375 (440)
T KOG1439|consen 349 KYIAYVSTTVET-PNPEVEILPGLELLG 375 (440)
T ss_pred eEEEEEEeccCC-CChHHhhhhHHHhhC
Confidence 999999997655 467777777777664
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-52 Score=408.90 Aligned_cols=368 Identities=31% Similarity=0.534 Sum_probs=304.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (523)
+.+.|||||+|||+.+++.+++|+.+|++|+|+|+|++||+-.+++++.++..|++.+....
T Consensus 3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p------------------ 64 (434)
T COG5044 3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP------------------ 64 (434)
T ss_pred ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc------------------
Confidence 44679999999999999999999999999999999999999999999999889988763210
Q ss_pred cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (523)
Q Consensus 99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L 178 (523)
. .....|+|++||. |+++++.++++.+|++.++.+|++|+.+...|+|. +|+++++|.++.++|+++.+++.+||.+
T Consensus 65 ~-k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~v 141 (434)
T COG5044 65 S-KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRV 141 (434)
T ss_pred c-ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHH
Confidence 0 1124689999998 99999999999999999999999999999999887 6799999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHH
Q 009881 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (523)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~-~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~ 257 (523)
|||++++.+|.+. . ...-+.+.++++.+++. +|+++.....++.|++++.. +.+ +++++++.++.+|
T Consensus 142 mrFl~~V~n~~~~-~-----~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y 209 (434)
T COG5044 142 MRFLKWVSNYAEQ-K-----STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRY 209 (434)
T ss_pred HHHHHHHHhHHhh-h-----hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHH
Confidence 9999999888542 1 11112355678888886 79999999999999988752 332 5789999999999
Q ss_pred HHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009881 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (523)
Q Consensus 258 l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~ 337 (523)
++|++.||..+ ++||+||.+||+|+|||.+++.||+|+||+++.+|... ..+.+|. .++.+++|.++|.+|++.
T Consensus 210 ~~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~ 283 (434)
T COG5044 210 MRSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF 283 (434)
T ss_pred HHhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc
Confidence 99999999755 99999999999999999999999999999999998643 2234665 577889999999988876
Q ss_pred CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEec-CC--CCCCCCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCC
Q 009881 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414 (523)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~-~~--l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~ 414 (523)
+. +.. . . ....++.|++||.. +| +....+.++++|||.++.. .+.|++..+|+++..||+
T Consensus 284 -~~---~~~-~-------~---~q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPE 346 (434)
T COG5044 284 -RE---DSK-S-------V---GQFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPE 346 (434)
T ss_pred -cc---ccc-c-------c---chhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCC
Confidence 21 100 0 0 01136889999977 54 4444567899999988874 456999999999999999
Q ss_pred CcEEEEEEEeeccccchHHHHHHHHHHHH
Q 009881 415 GMFVLYFSALCDEVNQGKKLLHAALSALQ 443 (523)
Q Consensus 415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~ 443 (523)
|++|.|++|..++ ..++.++.++++.|.
T Consensus 347 Gy~l~yisT~~et-~~~e~ei~~~lell~ 374 (434)
T COG5044 347 GYYLAYISTIDET-PTPEDEILAALELLG 374 (434)
T ss_pred ceEEEEEEeccCC-CChHHHHHHHHHhhc
Confidence 9999999996554 478888888888665
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.95 E-value=2.4e-26 Score=248.58 Aligned_cols=344 Identities=15% Similarity=0.133 Sum_probs=212.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccccC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (523)
|||||||++||+||++|+++|++|+||||++++||+++|++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~-------------------------------------- 42 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-------------------------------------- 42 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec--------------------------------------
Confidence 699999999999999999999999999999999999999764
Q ss_pred CCceEEecCCCeEEecChHHHHHHhcCCc--cccccccccccee-eeccCCceeecCCCHHHHHhc-ccCChHhHHHHHH
Q 009881 105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (523)
Q Consensus 105 ~r~f~ldl~GP~ll~~~~~lv~lL~~~~~--~~ylef~~~~~~~-~~~~dg~~~~vP~s~~~if~~-~~ls~~~k~~L~~ 180 (523)
.+|.+|. |++++..++.+.+++...+. .++++|...++.+ ++..+|+.+.++.+.+..... ..+.+.+...+.+
T Consensus 43 -~G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 43 -DGFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred -CCeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 3467788 58888766666677777763 5678888777655 334467778888776533221 2234556666777
Q ss_pred HHHHHHhhccc-------Ccccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcc
Q 009881 181 FFKLVQGHLSL-------DESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (523)
Q Consensus 181 fl~~~~~~~~~-------~~~~~--~~-----~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s 246 (523)
|++.+...... .+... .. ..........|+.+|++++..++.++.++.+..... ..++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence 76655432210 00000 00 001122346899999999888888988765311111 1121 1122
Q ss_pred hHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 009881 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (523)
Q Consensus 247 ~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~ 326 (523)
+.. .+..+.. +. +++++|.+|++.++++|.+.++..|++|+++++|++|..+ ++++++|++.+|+++.
T Consensus 197 ~~~---~l~~~~~----~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 SIY---ALISALE----RE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred HHH---HHHHHHH----hh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 221 1211211 11 1157899999999999999999999999999999999887 6778899999999999
Q ss_pred cCEEEECCC--CCCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEec---CCCCCCCCceEEEcCCCCC--------
Q 009881 327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL-------- 392 (523)
Q Consensus 327 A~~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~---~~l~~~~~~~~~~~p~~~~-------- 392 (523)
||+||++.+ .++..++ +.+. .+... +.+.............+.++ .++.....+.++..+....
T Consensus 265 ad~VI~a~~~~~~~~~l~-~~~~-~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL-PNHP-RRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK 342 (502)
T ss_pred CCEEEECCcHHHHHHHhc-Cccc-cccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence 999997543 2322222 1110 11111 11111111112222222244 3332222222333231100
Q ss_pred C-CCCCceEEEEEeCCC-CCcCCCCcEEEEEEEeec
Q 009881 393 F-PEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD 426 (523)
Q Consensus 393 ~-~~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~ 426 (523)
+ -...+.+|+...+.. .+.+|+|+.++++.+.++
T Consensus 343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~ 378 (502)
T TIGR02734 343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVP 378 (502)
T ss_pred CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCC
Confidence 0 012567888887664 588999999998887664
No 7
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.94 E-value=1e-24 Score=235.09 Aligned_cols=386 Identities=13% Similarity=0.130 Sum_probs=221.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (523)
|||||||+|++||++|++|+++|++|+|||||+++||++++++.+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G---------------------------------- 46 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG---------------------------------- 46 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence 6999999999999999999999999999999999999999986543
Q ss_pred cCCCceEEecCCCeEEe------cChHHHHHHhcCCccccccccccccee-eeccCCceeecCCCHHHHHhc-ccCChHh
Q 009881 103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (523)
Q Consensus 103 ~~~r~f~ldl~GP~ll~------~~~~lv~lL~~~~~~~ylef~~~~~~~-~~~~dg~~~~vP~s~~~if~~-~~ls~~~ 174 (523)
|.+|. |++++. ....+.+.|...+. .+++......+ +...+|....++.+.+..... ....+.+
T Consensus 47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 44454 355432 12233444443332 24443333222 223356667777776544331 2334777
Q ss_pred HHHHHHHHHHHHhhccc---C---c-cc-ccc--------cc--ccccccCCcHHHHHHhcCCChhHHHHHHH-HHhccC
Q 009881 175 KNQLMRFFKLVQGHLSL---D---E-SE-ENN--------VR--ISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD 235 (523)
Q Consensus 175 k~~L~~fl~~~~~~~~~---~---~-~~-~~~--------~~--~~~~~~~~s~~efl~~~~l~~~l~~~l~~-~i~l~~ 235 (523)
...+.+|++.+.+.... . . .. ... .. ....+...++.++++++..++.++.++.+ +.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~ 198 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence 77888887765432110 0 0 00 000 00 01123357899999999899999997653 322221
Q ss_pred CCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEE
Q 009881 236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (523)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~ 315 (523)
.+.+ +++. +..+..+. ...++ ...+|.||+++|+++|.+.++.+||+|+++++|++|.++ ++++.
T Consensus 199 ~p~~----~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~ 263 (493)
T TIGR02730 199 VPAD----QTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV 263 (493)
T ss_pred CCcc----cchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence 1111 1122 11121111 11122 257899999999999999999999999999999999887 67889
Q ss_pred EEEeCCCcEEEcCEEEECCC--CCCCCCCcc--cchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCC-ceEEEcCCC
Q 009881 316 GVRLASGQDILSHKLVLDPS--FTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS-NFLVIFPPR 390 (523)
Q Consensus 316 gV~l~~G~~i~A~~VI~~p~--~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~-~~~~~~p~~ 390 (523)
+|++.+|+++.||+||++.. .++..|+.. .++..+..++.+.. ........+.++.++.+... ...+.++.-
T Consensus 264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~---s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~ 340 (493)
T TIGR02730 264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVK---SPSFLSLHLGVKADVLPPGTECHHILLEDW 340 (493)
T ss_pred EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccC---CCceEEEEEEecCccCCCCCCccEEecchh
Confidence 99999999999999997533 333333211 11111111111111 11223333345665433211 112333321
Q ss_pred CCCCCCCceEEEEEeCCC-CCcCCCCcEEEEEEEeeccccc-------hHHHHHHHHHHHHhhhhcCCCCCCCCcccccc
Q 009881 391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEVNQ-------GKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462 (523)
Q Consensus 391 ~~~~~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~~~~~-------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 462 (523)
.......+.+|+...+.. ++.+|+|+.++++.+......| -++.-+...++++..... .-
T Consensus 341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~---------~~--- 408 (493)
T TIGR02730 341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEK---------IF--- 408 (493)
T ss_pred hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHH---------HC---
Confidence 111123567888887654 5789999999887664322111 122233344444432200 00
Q ss_pred ccCCcceEEEEEEEeecc
Q 009881 463 EEAKPTLLWSALYIQDLS 480 (523)
Q Consensus 463 ~~~~~~il~~~~~~~~~~ 480 (523)
-..+.+|+|.-..+|.+.
T Consensus 409 p~l~~~I~~~~~~TP~t~ 426 (493)
T TIGR02730 409 PGLDSAIDYKEVGTPRTH 426 (493)
T ss_pred CChhhcEEEEEeeCchhH
Confidence 123567888877777654
No 8
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=3.3e-25 Score=237.76 Aligned_cols=260 Identities=21% Similarity=0.280 Sum_probs=169.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (523)
+..+||||||||++||+||+.|||+|++|+|||||+++||++++++++
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 356999999999999999999999999999999999999999998653
Q ss_pred ccccCCCceEEecCCCeEEecChHHHHHHhcCC-cccc-ccccccccee-eeccCCceeecCCCHHHHHh-cccCChHhH
Q 009881 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (523)
Q Consensus 100 ~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~-~~~y-lef~~~~~~~-~~~~dg~~~~vP~s~~~if~-~~~ls~~~k 175 (523)
+|.+|. ||+++...... .++.+.+ ...+ +++...++.+ ++..+|+...+..+.+.... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 467787 58777555543 4444444 4444 7777766666 44445778888777654332 233345556
Q ss_pred HHHHHHHHHHHhhccc-C---cc-cccc----ccc------cccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcch
Q 009881 176 NQLMRFFKLVQGHLSL-D---ES-EENN----VRI------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (523)
Q Consensus 176 ~~L~~fl~~~~~~~~~-~---~~-~~~~----~~~------~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~ 240 (523)
..+++++..+.+..+. . .. .... ... .......+..++++.+-.++.++..+.+...... ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence 5666666543321110 0 00 0000 000 0012235667777655556677776665432221 221
Q ss_pred hhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 009881 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (523)
Q Consensus 241 ~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~ 320 (523)
. ...++..+..+ ++ +.. | +.||+||++.|+++|.+.++++||+|+++++|++|.++ +|+.++|++.
T Consensus 198 ~-----~~~a~~~~~~~---~~-~~~--G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 S-----TPPALYLLLSH---LG-LSG--G-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred C-----chhHHHHHHHH---hc-ccC--C-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 0 01122222221 11 221 2 67999999999999999999999999999999999998 7777788877
Q ss_pred CCcEEEcCEEEECCCC
Q 009881 321 SGQDILSHKLVLDPSF 336 (523)
Q Consensus 321 ~G~~i~A~~VI~~p~~ 336 (523)
+|+.+.+|.||.+.+.
T Consensus 264 ~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 264 DGENIEADAVVSNADP 279 (487)
T ss_pred ccceeccceeEecCch
Confidence 8878999999976544
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=7e-24 Score=228.74 Aligned_cols=382 Identities=13% Similarity=0.055 Sum_probs=208.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (523)
.||||||+|++||+||++|+++|++|+|||+++++||++++++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 599999999999999999999999999999999999999998643
Q ss_pred cCCCceEEecCCCeEEec---ChHHHHHHhcCCccccccccccccee-eeccCC-ceeecCCCHHHHHhc-ccCChHhHH
Q 009881 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (523)
Q Consensus 103 ~~~r~f~ldl~GP~ll~~---~~~lv~lL~~~~~~~ylef~~~~~~~-~~~~dg-~~~~vP~s~~~if~~-~~ls~~~k~ 176 (523)
+|.+|. |++++.. .+.+-+++.+.|+... ++...++.+ ++..|| +.+.++.+.+..... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 467777 5887743 3345556666776421 123333332 333456 345556665432210 111233321
Q ss_pred HHHHHHHHH----HhhcccCc----cc-ccc---------cc-ccccccCCcHHHHHHhc--CCChhHHHHHHHHHhccC
Q 009881 177 QLMRFFKLV----QGHLSLDE----SE-ENN---------VR-ISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMAD 235 (523)
Q Consensus 177 ~L~~fl~~~----~~~~~~~~----~~-~~~---------~~-~~~~~~~~s~~efl~~~--~l~~~l~~~l~~~i~l~~ 235 (523)
+++.+..+ .......+ .. ... .. ....+...|+.+|++++ ..++.++.++......
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~-- 197 (492)
T TIGR02733 121 -FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL-- 197 (492)
T ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--
Confidence 11111100 00000000 00 000 00 00113358999999986 4567788876532211
Q ss_pred CCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEE
Q 009881 236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (523)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~ 315 (523)
+...+ ..+.++..++. +..+..... | ++||+||+++|+++|.+.++..||+|+++++|++|.++ ++++.
T Consensus 198 ~~~~~-~~~~~~~~~~~-----~~~~~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~ 266 (492)
T TIGR02733 198 YSQED-ADETAALYGAT-----VLQMAQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAG 266 (492)
T ss_pred hccCC-hhhhhHHHHHH-----HhhccccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEE
Confidence 11111 01122222111 111111111 2 46899999999999999999999999999999999987 56667
Q ss_pred EEEeCCC-----cEEEcCEEEECCC-CCCCCCCcccchhhhhhhh-hcccCCCcceEEEEEEEecCCCCC-C-CCceEEE
Q 009881 316 GVRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQ-AFSLSDNKGKVARGICITRSSLKP-D-LSNFLVI 386 (523)
Q Consensus 316 gV~l~~G-----~~i~A~~VI~~p~-~~~~~l~~~~~~~l~~~~~-~l~~~~~~~~v~r~i~i~~~~l~~-~-~~~~~~~ 386 (523)
+|++.+| +++.||+||++.+ ..+.+++ + ++.++..+. .+.+...........+.++....+ . ..+....
T Consensus 267 gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~ 344 (492)
T TIGR02733 267 WVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFL 344 (492)
T ss_pred EEEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeec
Confidence 7877665 5799999997533 2223332 1 122222221 222211111122233445553211 1 1122222
Q ss_pred cCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccc-------hHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009881 387 FPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQ-------GKKLLHAALSALQKLLVTGTAGNSSTAQS 459 (523)
Q Consensus 387 ~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~-------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 459 (523)
+.+ ...+|+...+.+++.+|+|+.++++++.++...+ -++.-+...++++..... .-
T Consensus 345 ~~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~---------~~ 408 (492)
T TIGR02733 345 SDH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGH---------YF 408 (492)
T ss_pred cCC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---------HC
Confidence 221 2268887777777889999999988876642211 123333455555543210 00
Q ss_pred cccccCCcceEEEEEEEeecc
Q 009881 460 EDMEEAKPTLLWSALYIQDLS 480 (523)
Q Consensus 460 ~~~~~~~~~il~~~~~~~~~~ 480 (523)
-+.+.+|++.-..+|.+.
T Consensus 409 ---p~l~~~i~~~~v~TP~t~ 426 (492)
T TIGR02733 409 ---DLLEENWVHVELATPRTF 426 (492)
T ss_pred ---CCccccEEEEEccCCchH
Confidence 123556777666666543
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.92 E-value=1.4e-22 Score=216.91 Aligned_cols=351 Identities=14% Similarity=0.148 Sum_probs=207.0
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (523)
..||||||||++||+||..|+++ |++|+|+|+++++||+++|.+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999986532
Q ss_pred ccccccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHH
Q 009881 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (523)
Q Consensus 98 ~~~~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~ 176 (523)
+|.+|+ |+++++... .+.+++.+.|+..++........+++..+|+++++|.+..+.++...+++.+|.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 356677 688886665 488889899987765443333344444238888899876666666555555544
Q ss_pred HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHH
Q 009881 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (523)
Q Consensus 177 ~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~ 256 (523)
.+. +...... ....+.|+.||+++.. .+.+.+.+...+....+..++ +++++..++.++..
T Consensus 122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDFIRPA--------------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhhccCC--------------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence 332 1111000 0123589999998653 344433333222222233333 33566655544322
Q ss_pred HHHh-------h------------hcccCCCcc-EEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEE
Q 009881 257 YNSS-------I------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (523)
Q Consensus 257 ~l~s-------~------------g~~g~~~~~-~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~g 316 (523)
.... + ..+..+.+. +.++++|+++|++++++.+. .+.|+++++|++|..+ +++ +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 1111 0 001111122 56789999999998886553 3789999999999875 333 46
Q ss_pred EEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC-CCCCCceEEEcCCCCCCC
Q 009881 317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP 394 (523)
Q Consensus 317 V~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l-~~~~~~~~~~~p~~~~~~ 394 (523)
|++++|+++.||+||+. |...+..++.+..+. ..+.+. ...+..+....+.++++. ........+..|....
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~---~~~~l~-~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~-- 331 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGLLSELSNS---ASSHLD-KIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK-- 331 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHHhcccCHH---HHHHHh-cCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence 77778888999999964 433323332111111 122222 223566777777787763 3222344445553321
Q ss_pred CCCceEEEEEeCCC-CCcCCCCcEEEEEEEeecc-----ccchHHHHHHHHHHHHh
Q 009881 395 EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQK 444 (523)
Q Consensus 395 ~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~ 444 (523)
.....+...++. ...+|+|..++.+...... ..+.++.++.+++.|-+
T Consensus 332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~ 385 (462)
T TIGR00562 332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKK 385 (462)
T ss_pred --CceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHH
Confidence 122233333222 4678989877755432211 11234555555555544
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.91 E-value=5e-22 Score=210.63 Aligned_cols=347 Identities=15% Similarity=0.144 Sum_probs=195.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (523)
+|||||||++||+||..|+++|++|+|||+++++||+++++..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----------------------------------- 45 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----------------------------------- 45 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence 589999999999999999999999999999999999999976543
Q ss_pred CCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHH
Q 009881 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (523)
Q Consensus 104 ~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl 182 (523)
|.+|. |.++++. ...+.+++.+.|+.....+......+.+ +|+.++++. ...+.+...+++.++..+...+
T Consensus 46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence 22233 2343332 3367788888888655555443332322 566554432 2344444555665555433222
Q ss_pred HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhh
Q 009881 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (523)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g 262 (523)
...... . ...+..+.++.+|++++..++..+.++. .+....+..++ +++++...+..+..+...
T Consensus 118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWE-PLLESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHH-HHHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 111110 0 0123456899999997654444445443 21111122222 335665554444332111
Q ss_pred cccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009881 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (523)
Q Consensus 263 ~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l 341 (523)
........+.+|++|++.|+++|.+.+...|++|+++++|++|..+ +++++.+. .+|+++.||+||++ |...+..+
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0000011267899999999999999999999999999999999876 55555554 57889999999964 33333343
Q ss_pred CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCceEEEEEeCCC-CCcCCCCcEEEE
Q 009881 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN-LAVCPLGMFVLY 420 (523)
Q Consensus 342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~-~~~cP~G~~vi~ 420 (523)
+.+..+. ....+.+ ..+.......+-+++++.+ ...+.++... .....+...+.. ...+|+|..+++
T Consensus 259 l~~~~~~---~~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~g~~~~~ 326 (434)
T PRK07233 259 VPDLPAD---VLARLRR-IDYQGVVCMVLKLRRPLTD---YYWLNINDPG-----APFGGVIEHTNLVPPERYGGEHLVY 326 (434)
T ss_pred cCCCcHH---HHhhhcc-cCccceEEEEEEecCCCCC---CceeeecCCC-----CCcceEEEecccCCccccCCceEEE
Confidence 2111111 1111221 1233445555556777643 2222222111 111222333322 345667877766
Q ss_pred EEEeeccc-----cchHHHHHHHHHHHHh
Q 009881 421 FSALCDEV-----NQGKKLLHAALSALQK 444 (523)
Q Consensus 421 ~st~~~~~-----~~~~~~l~~~~~~l~~ 444 (523)
++..+... ...++.++.+++.|-+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 355 (434)
T PRK07233 327 LPKYLPGDHPLWQMSDEELLDRFLSYLRK 355 (434)
T ss_pred EeeecCCCChhhcCCHHHHHHHHHHHHHH
Confidence 65544321 1224455555555544
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.91 E-value=5.9e-22 Score=214.03 Aligned_cols=295 Identities=17% Similarity=0.162 Sum_probs=183.3
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceec
Q 009881 16 PPIEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEIS 94 (523)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (523)
.+....++||||||||++||+||++|+++ |++|+|||+++++||++.|++.+
T Consensus 6 ~~~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------------- 58 (496)
T PLN02576 6 GSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------------- 58 (496)
T ss_pred cccccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC---------------------------
Confidence 34556678999999999999999999999 99999999999999999997542
Q ss_pred cccccccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccc-cceeeeccCCceeecCCCHHHHHhcccCChH
Q 009881 95 NYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173 (523)
Q Consensus 95 ~~~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~-~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~ 173 (523)
+|.+|. ||+.++..++.+..|.+.++..++.|... ...+++. +|+++++|.+..+.+....+++.
T Consensus 59 ------------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~ 124 (496)
T PLN02576 59 ------------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAP 124 (496)
T ss_pred ------------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChh
Confidence 355677 68888777776666666688777666432 2334443 88999999887666666667766
Q ss_pred hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHH
Q 009881 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINR 253 (523)
Q Consensus 174 ~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~ 253 (523)
+|..+..-.. ..... .....+.|+.+|+++. +.+.+.+.+.-.+....+..++ .++|+..++..
T Consensus 125 ~~~~~~~~~~---~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~ 188 (496)
T PLN02576 125 GKIRAGLGAF---GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPK 188 (496)
T ss_pred HHHHHhHHHh---hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHH
Confidence 6554332110 11000 0113468999999975 5555554443333233334443 34666665554
Q ss_pred HHHHHHhhhc--------c----------------c-CCCccEEeecCCcChHHHHHHHHHHHcC-cEEEcCCceeEEEE
Q 009881 254 LALYNSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLT 307 (523)
Q Consensus 254 ~~~~l~s~g~--------~----------------g-~~~~~~~~p~gG~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~ 307 (523)
+...-.+.|. . . ...+.+.++++|++.|+++|++ .+| +.|++|++|++|..
T Consensus 189 ~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~---~l~~~~i~l~~~V~~I~~ 265 (496)
T PLN02576 189 LWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAK---RLGKDKVKLNWKVLSLSK 265 (496)
T ss_pred HHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHH---hhCcCcEEcCCEEEEEEE
Confidence 3322111100 0 0 0112256789999999998875 346 78999999999987
Q ss_pred ecCCCcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881 308 DQNSGSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (523)
Q Consensus 308 ~~~~g~~~gV~l--~~G~-~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l 376 (523)
+ ++..+.|.+ .+|+ ++.||+||+. |...+..++.+.. ++..+.+.+ ..+..+..+.+.+++++
T Consensus 266 ~--~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~-~~~~~~~~v~l~~~~~~ 332 (496)
T PLN02576 266 N--DDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPE-FYYPPVAAVTTSYPKEA 332 (496)
T ss_pred C--CCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhcc-CCCCceEEEEEEEchHH
Confidence 6 332133433 3554 6999999964 4443333322212 222222322 22445666666677753
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.90 E-value=1.6e-21 Score=208.83 Aligned_cols=325 Identities=12% Similarity=0.150 Sum_probs=189.5
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccc
Q 009881 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~------G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (523)
.+|||||||++||+||..|+++ |.+|+|||+++++||+++|.+.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~----------------------------- 52 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK----------------------------- 52 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence 3699999999999999999996 37999999999999999997532
Q ss_pred cccccccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCC--------HHHHHhc
Q 009881 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (523)
Q Consensus 97 ~~~~~~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s--------~~~if~~ 167 (523)
+|.+|+ |+++++.. ..+.+++.+.|+..+..+..-...+++. +|++.++|.+ ..+.++.
T Consensus 53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 345676 58777554 4677888899987766555443445554 5666666543 2233333
Q ss_pred ccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcch
Q 009881 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (523)
Q Consensus 168 ~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~ 247 (523)
..++...|...+ ...... . ...+.+.|+.+|+++. +.+.+.+.++..+....+..++ .++++
T Consensus 121 ~~~~~~~~~~~~------~~~~~~-~--------~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIVAL------KDFITK-N--------KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHHhh------hhhccC-C--------CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCc--ccccH
Confidence 334333222211 111100 0 0113578999999975 3444333222222222233333 23555
Q ss_pred HHHHHHHHHHHHhhhcc------------cCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEE
Q 009881 248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (523)
Q Consensus 248 ~~~l~~~~~~l~s~g~~------------g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~ 315 (523)
...+..+..+....+.+ +.....+.++++|++.|+++|++.+.. ++|+++++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 54444444333222110 011123778999999999999876533 689999999999876 444 5
Q ss_pred EEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC-CCCceEEEcCCCCCC
Q 009881 316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF 393 (523)
Q Consensus 316 gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~-~~~~~~~~~p~~~~~ 393 (523)
.|++.+|+++.||+||++ |...+..+. .++++++....+. +..+....+.++++... .....-+++|+..
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~~----~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-- 329 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTFK----NSSLISIYLGFDILDEQLPADGTGFIVTENS-- 329 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcCC----CCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence 777788888999999965 433334432 2344554443332 34566666677765321 1123444555432
Q ss_pred CCCCceEEEEEeCCC--CCcCCCCcEEEEEE
Q 009881 394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFS 422 (523)
Q Consensus 394 ~~~~~~v~v~~~s~~--~~~cP~G~~vi~~s 422 (523)
...+-...+.+. ...+|++..++.++
T Consensus 330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~ 357 (463)
T PRK12416 330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMF 357 (463)
T ss_pred ---CCeEEEEEeecCCCCCcCCCCeEEEEEE
Confidence 111222233322 24567777666654
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.89 E-value=4.2e-21 Score=204.72 Aligned_cols=325 Identities=14% Similarity=0.171 Sum_probs=185.1
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (523)
+|||||||++||+||..|+++| ++|+|+|+++++||+++|++.++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g--------------------------------- 48 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--------------------------------- 48 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence 6999999999999999999988 89999999999999999976432
Q ss_pred ccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCH--------HHHHhcccCCh
Q 009881 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (523)
Q Consensus 102 ~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~--------~~if~~~~ls~ 172 (523)
+.+|+ |++.++..+ .+.+++.+.|+..+..+..-...+++. +|+++.+|... ...+..+.++.
T Consensus 49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 44566 465444433 577888888887654433212234443 77777776431 01111112221
Q ss_pred HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHH
Q 009881 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (523)
Q Consensus 173 ~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (523)
.++.+. ...... .......++|+.||+++. +.+...+.++..+....+..++ .++|+...+.
T Consensus 121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 111110 001000 001234578999999863 4544443333232222233332 3356555444
Q ss_pred HHHHHHHhhh-----------ccc-CCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 009881 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (523)
Q Consensus 253 ~~~~~l~s~g-----------~~g-~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~ 320 (523)
.+..+....+ ... .....+.++++|++.|++++++.+... +|+++++|++|..+ ++. +.|.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 4433322111 000 011225679999999999887654322 89999999999875 333 567778
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCce
Q 009881 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399 (523)
Q Consensus 321 ~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 399 (523)
+|+++.||+||++ |...+..+. .++++.+..+ +..+..+.+..+.+++++...+....+.+++.. +.+
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~~~~~~----~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 326 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLF--VAPPAFALFK----TIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT 326 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhc--cChhHHHHHh----CCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence 9999999999975 433323332 1222222222 223556777777788886322333344444321 122
Q ss_pred EEEE-EeCCC-CCcCCCCcEEEEEEE
Q 009881 400 IRVL-QLGGN-LAVCPLGMFVLYFSA 423 (523)
Q Consensus 400 v~v~-~~s~~-~~~cP~G~~vi~~st 423 (523)
+..+ ..+.. ...+|.|..++.++.
T Consensus 327 ~~~~~~~s~~~~~~~p~g~~~~~~~~ 352 (451)
T PRK11883 327 ITACTWTSKKWPHTTPEGKVLLRLYV 352 (451)
T ss_pred EEEEEeEcCcCCCCCCCCcEEEEEec
Confidence 3333 23322 466788888877665
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.89 E-value=9.5e-21 Score=197.09 Aligned_cols=347 Identities=16% Similarity=0.191 Sum_probs=212.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (523)
.|+|||||++||+||++|+++| .+|+|+|+.++.||..+|+..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~---------------------------------- 47 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID---------------------------------- 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC----------------------------------
Confidence 5899999999999999999999 9999999999999999998643
Q ss_pred ccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHH
Q 009881 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (523)
Q Consensus 102 ~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~ 180 (523)
+|.+|. ||+.++.+ ...++++.+.|.++.+.+..-...|++. +|+++++|... ++.-+.+....+..+.+
T Consensus 48 -----G~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 48 -----GFLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred -----CEEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 356677 57776555 6889999999999888777655556665 89999999874 44333322212223333
Q ss_pred HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHh
Q 009881 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260 (523)
Q Consensus 181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s 260 (523)
++....... .+....+.++.+|++++ +.+++.+.++-.+.-.-|..+. +.+|+..+...+.+-.+.
T Consensus 119 ~~~~~~~~~-----------~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~ 184 (444)
T COG1232 119 ALQEFIRPK-----------SWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERK 184 (444)
T ss_pred HHHhhhccc-----------CCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence 332211110 02345688999999853 2333333222121111122222 335665222222111111
Q ss_pred hhcc-------c--C---CCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 009881 261 IGRF-------Q--N---ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH 328 (523)
Q Consensus 261 ~g~~-------g--~---~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~ 328 (523)
.+.. + . ..+.|.++++|+++|++++.+.+... ++++++|+.|..+. ++ +++.+.+|+++.||
T Consensus 185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~--~~~~~~~g~~~~~D 258 (444)
T COG1232 185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AG--KTIVDVGGEKITAD 258 (444)
T ss_pred hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-Cc--cEEEEcCCceEEcc
Confidence 1111 0 0 01237788999999999999877666 99999999998752 23 45556889999999
Q ss_pred EEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCC-CCCCCCceEEEcCCCCCCCCCCceEEEEEeC
Q 009881 329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG 406 (523)
Q Consensus 329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~-l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s 406 (523)
.||++ |.+.++.++.+ ...... +.+. ....++.+++.++.+ ....+++..+.+|.... . +.....+
T Consensus 259 ~VI~t~p~~~l~~ll~~--~~~~~~---~~~~-~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~~ 326 (444)
T COG1232 259 GVISTAPLPELARLLGD--EAVSKA---AKEL-QYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITFH 326 (444)
T ss_pred eEEEcCCHHHHHHHcCC--cchhhh---hhhc-cccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEEe
Confidence 99964 55444444322 111111 1111 234566777777774 33344566777764331 1 3333333
Q ss_pred CC--CCcCCCCcEEEEEEEeecccc-----chHHHHHHHHHHHHhh
Q 009881 407 GN--LAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKL 445 (523)
Q Consensus 407 ~~--~~~cP~G~~vi~~st~~~~~~-----~~~~~l~~~~~~l~~~ 445 (523)
+. ....|+|+.++++........ .-++.++.+++.|-+.
T Consensus 327 S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~ 372 (444)
T COG1232 327 SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKL 372 (444)
T ss_pred cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHH
Confidence 33 467799999999987554311 1256666666666553
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.89 E-value=3.2e-20 Score=198.31 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=179.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (523)
+|+|||+|++||+||..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999986421
Q ss_pred CCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeee-ccCCcee--ecC---CCH---HHHHh-cccCCh
Q 009881 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (523)
Q Consensus 104 ~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~-~~dg~~~--~vP---~s~---~~if~-~~~ls~ 172 (523)
.++.+|. |++++... ..+.+++.+.|+...+.|......+.. ..++... ..| ... .++++ ...++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1234566 46766443 367888888998776666543332221 1122222 122 211 12222 223455
Q ss_pred HhHHHHHHHH-HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHH
Q 009881 173 MEKNQLMRFF-KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (523)
Q Consensus 173 ~~k~~L~~fl-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l 251 (523)
.+|.++..-+ ...... .+...++.+.|+.+|+++.+.++.+.+.+...+....+..++ +++|+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p--~~~S~~~~~ 189 (453)
T TIGR02731 122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINP--DELSMTVVL 189 (453)
T ss_pred HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence 5554433211 111000 011234567899999999999988776433222111122233 346777776
Q ss_pred HHHHHHHHhhhcccCCCccEEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-----EE
Q 009881 252 NRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DI 325 (523)
Q Consensus 252 ~~~~~~l~s~g~~g~~~~~~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-----~i 325 (523)
..+..++. +.+|. -..+..+| ++.+++++.+.++..|++|++|++|++|..++ ++++++|++.+|+ ++
T Consensus 190 ~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~ 263 (453)
T TIGR02731 190 TALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEV 263 (453)
T ss_pred HHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEE
Confidence 66665543 22331 12345555 46899999999999999999999999998652 6667888887766 79
Q ss_pred EcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881 326 LSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (523)
Q Consensus 326 ~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (523)
.||.||++ |...+.+++ +...+-....+.+.. .....+.++.+.+++++..
T Consensus 264 ~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~~ 315 (453)
T TIGR02731 264 TADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLNG-LEGVPVINVHIWFDRKLTT 315 (453)
T ss_pred ECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhhc-CCCCcEEEEEEEEccccCC
Confidence 99999964 333334442 211100111122221 1244678888889998753
No 17
>PRK07208 hypothetical protein; Provisional
Probab=99.89 E-value=3.2e-20 Score=199.72 Aligned_cols=351 Identities=15% Similarity=0.186 Sum_probs=191.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (523)
+...||||||||++||+||..|+++|++|+|+|+++++||++.+...+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~-------------------------------- 49 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK-------------------------------- 49 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------------------
Confidence 566899999999999999999999999999999999999999986543
Q ss_pred ccccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881 100 LLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (523)
Q Consensus 100 ~~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L 178 (523)
+|.+|+ |+++++..+ .+.+++.+.+..+........ .+++. +|+...+|.+..+.++ .+++.++...
T Consensus 50 -------g~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~~ 117 (479)
T PRK07208 50 -------GNRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPRL-SRIYY-RGKFFDYPLKAFDALK--NLGLWRTAKC 117 (479)
T ss_pred -------CceEcc-CCceeccCCHHHHHHHHHhcCCCcccccccc-ceEEE-CCEEecCCcchhHHHH--hCCHhHHHHH
Confidence 244566 577776554 567777777652222222111 22332 7888888876433332 2333322221
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHH-HHHH-HHHhccCCCcchhhhhcchHHHHHHH--
Q 009881 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVL-YAIAMADYDQEVSEYVLKTRDGINRL-- 254 (523)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~-~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~~-- 254 (523)
+ ........ .....+.++.||+++. +.+.+. .++. +...+ +..++ +++|+..++.++
T Consensus 118 ~--~~~~~~~~------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~~ 178 (479)
T PRK07208 118 G--ASYLKARL------------RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIKG 178 (479)
T ss_pred H--HHHHHHhc------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCcccC
Confidence 1 11111110 0112468999999963 333333 3332 22222 23333 335665433221
Q ss_pred -------HHHHHhh-h-------cccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe
Q 009881 255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319 (523)
Q Consensus 255 -------~~~l~s~-g-------~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l 319 (523)
...+... + ..+.....+.||++|+++|+++|.+.++..|++|++|++|++|..+. ++.++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~ 257 (479)
T PRK07208 179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV 257 (479)
T ss_pred CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence 1122211 0 00100123779999999999999999999999999999999998862 343444443
Q ss_pred --CCCc--EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCC
Q 009881 320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFP 394 (523)
Q Consensus 320 --~~G~--~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~ 394 (523)
.+|+ ++.||+||++ |...+..++. ++++...........+..+..+.+.++++.... .. .+.+|+....
T Consensus 258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~~-~~~~~~~~~~- 331 (479)
T PRK07208 258 NDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFP-DN-WIYIHDPDVK- 331 (479)
T ss_pred EcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCC-Cc-eEEecCCCCc-
Confidence 2454 5899999975 3332222221 112222222112222344555555667653211 12 2334332211
Q ss_pred CCCceEEEEEeCC-CCCcCCCCc-EEEEEEEeeccc-----cchHHHHHHHHHHHHh
Q 009881 395 EQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDEV-----NQGKKLLHAALSALQK 444 (523)
Q Consensus 395 ~~~~~v~v~~~s~-~~~~cP~G~-~vi~~st~~~~~-----~~~~~~l~~~~~~l~~ 444 (523)
. -.+..++. +...+|+|+ ..+.+...+... ..-++.++.+++.|..
T Consensus 332 --~--~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~ 384 (479)
T PRK07208 332 --V--GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELAR 384 (479)
T ss_pred --c--ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHH
Confidence 0 12222332 246679987 344333322211 1234566666666655
No 18
>PLN02612 phytoene desaturase
Probab=99.88 E-value=6.7e-20 Score=200.08 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=181.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (523)
..||+|||+|++||++|.+|+++|++|+++|+++++||++.++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4789999999999999999999999999999999999999997531
Q ss_pred ccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeec-cCCcee--e----cCCC---HHHHHh-ccc
Q 009881 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS 169 (523)
Q Consensus 102 ~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~-~dg~~~--~----vP~s---~~~if~-~~~ 169 (523)
.++.+|. |+++++.. ..+.++|.+.|+...++|......+.+. .++... . .|.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 1244555 57776543 3678888899987777766543333221 122222 1 2222 112232 234
Q ss_pred CChHhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881 170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (523)
Q Consensus 170 ls~~~k~~L~~-fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~ 248 (523)
+++.+|.++.. ++.... .. .....++.+.|+.||+++++.++.+.+-++..+...-+..++ +++|+.
T Consensus 214 ls~~~kl~~~~~~~~~~~---~~-------~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~ 281 (567)
T PLN02612 214 LTWPEKIKFAIGLLPAIV---GG-------QAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQ 281 (567)
T ss_pred CCHHHHHHHHHhhhHHhc---cc-------chhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHH
Confidence 44444443221 111000 00 011224557899999999999987775332222111112222 335666
Q ss_pred HHHHHHHHHHHhhhcccCCCccEEeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEc
Q 009881 249 DGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS 327 (523)
Q Consensus 249 ~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A 327 (523)
..+..+..++.. +.|. ...++.|+. ..|+++|.+.++..||+|++|++|++|..++ ++++++|++.+|+++.|
T Consensus 282 ~~l~~l~~~l~~--~~gs---~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~a 355 (567)
T PLN02612 282 CILIALNRFLQE--KHGS---KMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEG 355 (567)
T ss_pred HHHHHHHHHHhc--cCCc---eEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEEEC
Confidence 666555554331 2221 245676665 5799999998888999999999999998853 66677888889999999
Q ss_pred CEEEEC-CCCCCCCCCcccc--hhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881 328 HKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (523)
Q Consensus 328 ~~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (523)
|+||++ |...+..++.... .++....+.+ ....+.+..+.+++++.
T Consensus 356 d~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~ 404 (567)
T PLN02612 356 DVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLK 404 (567)
T ss_pred CEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccC
Confidence 999975 4333333321111 1223222222 13446777777899874
No 19
>PLN02487 zeta-carotene desaturase
Probab=99.85 E-value=4.6e-19 Score=191.81 Aligned_cols=270 Identities=17% Similarity=0.200 Sum_probs=171.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (523)
...+|+|||+|++||++|..|+++|++|+++|+++++||+++++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 44699999999999999999999999999999999999999987421
Q ss_pred cccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCcee----ecC--CC---HHHHHhcccC
Q 009881 101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL 170 (523)
Q Consensus 101 ~~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~----~vP--~s---~~~if~~~~l 170 (523)
.++.+|. |+++++.. ..+.++|.+.|+...+.+......|. ..+|++. ++| .. ...+++...+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 2344555 57776543 36888899999876665543222222 2244441 122 21 1245566777
Q ss_pred ChHhHHHHHHHH--H-HHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcch
Q 009881 171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (523)
Q Consensus 171 s~~~k~~L~~fl--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~ 247 (523)
++.+|.++..-+ . .+..... .. ...+.+....+.|+.+|+++++.++.+.+-++..+....+..++ +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 777776653211 1 0111000 00 00111223456999999999988875444333333222223332 44677
Q ss_pred HHHHHHHHHHHHhhhcccCCCccEEeecCCcCh-HHHHHHHHHHHcCcEEEcCCceeEEEEecC-CC--cEEEEEe---C
Q 009881 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (523)
Q Consensus 248 ~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~e-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-~g--~~~gV~l---~ 320 (523)
..++..+..+. .+.-+ +-+.||+||.++ |++.+++.++..||+|+++++|++|..+.+ +| ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 77666553322 11111 226799999985 999999999999999999999999998731 22 3788887 3
Q ss_pred CCcEEEcCEEEEC-CCCCCCCC
Q 009881 321 SGQDILSHKLVLD-PSFTVPGS 341 (523)
Q Consensus 321 ~G~~i~A~~VI~~-p~~~~~~l 341 (523)
+++++.||.||++ |.+.+..|
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred CceEEECCEEEECCCHHHHHHh
Confidence 4557899999964 43333344
No 20
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.84 E-value=3.7e-19 Score=190.56 Aligned_cols=267 Identities=17% Similarity=0.180 Sum_probs=171.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (523)
+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999986321
Q ss_pred CCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceee--------cC-CCHHHHHhcccCChH
Q 009881 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--------VP-DSRAAIFKDKSLGLM 173 (523)
Q Consensus 104 ~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~--------vP-~s~~~if~~~~ls~~ 173 (523)
.+|.+|. |+++++... .+.+++.+.|+...+.+......+.. .++++.. .| .....+++.+.+++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 2345666 588776443 67778888888765544432222221 1333221 23 223466777888888
Q ss_pred hHHHHHHHHHH---HHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHH
Q 009881 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (523)
Q Consensus 174 ~k~~L~~fl~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~ 250 (523)
+|.++.+.+.. ...... .. ...+.+....+.|+.+|+++++.++.+.+.+...+..+.+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLVD-YD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhccc-cc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 88776554321 111100 00 00011223456999999999999986444333222222222232 34677776
Q ss_pred HHHHHHHHHhhhcccCCCccEEeecCCcCh-HHHHHHHHHHHcCcEEEcCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 009881 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (523)
Q Consensus 251 l~~~~~~l~s~g~~g~~~~~~~~p~gG~~e-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-~g--~~~gV~l~~G---~ 323 (523)
+..++.+. .++.+ +-+.++++|.++ +.+.+.+.++..||+|+++++|++|..+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 66555333 23333 126789999876 778899999999999999999999987621 12 3677777554 5
Q ss_pred EEEcCEEEEC-CCCCCCCC
Q 009881 324 DILSHKLVLD-PSFTVPGS 341 (523)
Q Consensus 324 ~i~A~~VI~~-p~~~~~~l 341 (523)
++.||+||++ |.+....|
T Consensus 270 ~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRL 288 (474)
T ss_pred EEECCEEEECCChHHHHhh
Confidence 6899999964 44443444
No 21
>PLN02268 probable polyamine oxidase
Probab=99.80 E-value=4.1e-18 Score=181.11 Aligned_cols=273 Identities=14% Similarity=0.144 Sum_probs=156.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (523)
.+|||||||++||+||..|.++|++|+|||+++++||+++|....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~----------------------------------- 45 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF----------------------------------- 45 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence 379999999999999999999999999999999999999985421
Q ss_pred cCCCceEEecCCCeEEec---ChHHHHHHhcCCcccccccccccceeeecc--------CCceeecCCCHHHHHhcccCC
Q 009881 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDA--------DAKLCSVPDSRAAIFKDKSLG 171 (523)
Q Consensus 103 ~~~r~f~ldl~GP~ll~~---~~~lv~lL~~~~~~~ylef~~~~~~~~~~~--------dg~~~~vP~s~~~if~~~~ls 171 (523)
++.+|+ |+++++. ..++.+++.+.|+..+-.. .+..+++.. ++....+|... ..
T Consensus 46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----- 110 (435)
T PLN02268 46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDMDGNQVPQEL---VT----- 110 (435)
T ss_pred ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecCCCCCCCHHH---HH-----
Confidence 244677 6888864 2357788888887543211 111111110 11111122110 00
Q ss_pred hHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-C------hhHHHHHHHHH-hc-cCCCcchhh
Q 009881 172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-P------HKIKSIVLYAI-AM-ADYDQEVSE 242 (523)
Q Consensus 172 ~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l-~------~~l~~~l~~~i-~l-~~~~~~~~~ 242 (523)
.-+..+.++++.+.... .....+.|+.+|++++.. . ...++++.+.+ .+ .-+..++
T Consensus 111 -~~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (435)
T PLN02268 111 -KVGETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA-- 175 (435)
T ss_pred -HHHHHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--
Confidence 00111222222222110 012356788998765321 1 12233332111 00 1122222
Q ss_pred hhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC
Q 009881 243 YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (523)
Q Consensus 243 ~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G 322 (523)
+++|+... . ....+. |.-.+..+|++.|++++++ |..|+++++|++|..+ ++. +.|++.+|
T Consensus 176 ~~ls~~~~-------~-~~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g 236 (435)
T PLN02268 176 DTISLKSW-------D-QEELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDG 236 (435)
T ss_pred HhCchhhc-------C-CccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCC
Confidence 22333210 0 000010 1123677899999998754 5579999999999876 333 46777889
Q ss_pred cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009881 323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (523)
Q Consensus 323 ~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~ 379 (523)
+++.||+||+. |...+......+.|++|+.+....++..++.+.|.++.+++++-+.
T Consensus 237 ~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 237 TTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred cEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 89999999964 5444332223455667766655444445788899999999986443
No 22
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.79 E-value=5e-17 Score=171.34 Aligned_cols=276 Identities=16% Similarity=0.164 Sum_probs=166.9
Q ss_pred HHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccccCCCceEEecCCC
Q 009881 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (523)
Q Consensus 36 ~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~f~ldl~GP 115 (523)
+||..|+++|++|+|||+++++||++.|++.++. .+.+|+ |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 4899999999999999999999999999865431 123566 57
Q ss_pred eEEecC-hHHHHHHhcCCcccccccccccceeeeccCCce--e---ecCCC---HHHHHhcccCChHhHHHHHHHHHHHH
Q 009881 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL--C---SVPDS---RAAIFKDKSLGLMEKNQLMRFFKLVQ 186 (523)
Q Consensus 116 ~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~--~---~vP~s---~~~if~~~~ls~~~k~~L~~fl~~~~ 186 (523)
++++.. ..+.+++.+.|+..+..+. .....++..++.. . ++|.. ...+.+...+++.+|..+.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGP-RLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhcc-cCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 777654 4678888888887765542 1222222223321 1 12221 12233456677778877776654433
Q ss_pred hhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccC
Q 009881 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (523)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~ 266 (523)
... ..++.+.|+.+|+++++.++.+.+.+...+....+..++ +++|+...+..+.. .+.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 211 123457899999999888877776544322222233333 33565554443322 1111111
Q ss_pred CCccEEeecCCcChHH-HHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 009881 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS 344 (523)
Q Consensus 267 ~~~~~~~p~gG~~eL~-qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~ 344 (523)
...+.||++|++++. ++|.+.++..|++|++|++|++|..+ ++++..+...+|+++.||+||++ |...+..++ +
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~ 260 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P 260 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence 122789999988766 55888888889999999999999886 44433222357888999999974 443333432 2
Q ss_pred cchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (523)
Q Consensus 345 ~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l 376 (523)
+++..+ .+. ...+..+.+..+.+++++
T Consensus 261 -~~~~~~---~l~-~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 261 -GEDLGA---LLT-ALGYSPITTVHLRLDRAV 287 (419)
T ss_pred -CchHHH---HHh-hcCCcceEEEEEEeCCCc
Confidence 111221 222 123455667777789887
No 23
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.79 E-value=1.9e-18 Score=173.68 Aligned_cols=152 Identities=25% Similarity=0.286 Sum_probs=95.1
Q ss_pred cEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC--CCCCCCCcccch
Q 009881 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSLASSHQ 347 (523)
Q Consensus 270 ~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~--~~~~~l~~~~~~ 347 (523)
++.||+||+|+++.++++.+..+|++|.+++.|++|..| +|+++||+++||++++++.||.|.. .++.+|+ + ..
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl-p-~e 330 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL-P-GE 330 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC-C-Cc
Confidence 367999999999999999999999999999999999998 7999999999999999999997644 3333443 1 12
Q ss_pred hhhhhh--hhcccCCCcc--eEEEEEEEecCCCCCCCCc-e--------------EEEcCCCCCCCCCCceEEEEEeCCC
Q 009881 348 QLQESF--QAFSLSDNKG--KVARGICITRSSLKPDLSN-F--------------LVIFPPRSLFPEQVTSIRVLQLGGN 408 (523)
Q Consensus 348 ~l~~~~--~~l~~~~~~~--~v~r~i~i~~~~l~~~~~~-~--------------~~~~p~~~~~~~~~~~v~v~~~s~~ 408 (523)
.+|++. +++....+.. +..--++.-...-.+-++. . .+.-|...+. ...+.|++...|+-
T Consensus 331 ~LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~-s~~pvI~~siPS~l 409 (561)
T KOG4254|consen 331 ALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLA-SHRPVIELSIPSSL 409 (561)
T ss_pred cCCchhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhccc-ccCCeEEEeccccc
Confidence 245442 1121111111 1111111111110111111 0 1111111111 12456777777765
Q ss_pred C-CcCCCCcEEEEEEEeec
Q 009881 409 L-AVCPLGMFVLYFSALCD 426 (523)
Q Consensus 409 ~-~~cP~G~~vi~~st~~~ 426 (523)
+ ..+|+|+.||++-+...
T Consensus 410 Dptlappg~Hvl~lf~~~t 428 (561)
T KOG4254|consen 410 DPTLAPPGKHVLHLFTQYT 428 (561)
T ss_pred CCCcCCCCceEEEEeccCC
Confidence 4 78999999999988654
No 24
>PLN02676 polyamine oxidase
Probab=99.78 E-value=2.1e-17 Score=177.25 Aligned_cols=286 Identities=11% Similarity=0.083 Sum_probs=161.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (523)
.+..+||||||+|++||+||..|++.|. +|+|+|+++++||++.+.+.+
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~------------------------------ 72 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA------------------------------ 72 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC------------------------------
Confidence 3457899999999999999999999998 699999999999999986532
Q ss_pred ccccccCCCceEEecCCCeEEec-----ChHHHHHHhcCCccccc-ccccccceeeeccCCceeecCCCHHHHHhcccCC
Q 009881 98 SRLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171 (523)
Q Consensus 98 ~~~~~~~~r~f~ldl~GP~ll~~-----~~~lv~lL~~~~~~~yl-ef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls 171 (523)
++.+|+ |++++.. ...+.+++.+.|+..+. .+... ...++..+|+.+ +. +...
T Consensus 73 ---------g~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~----- 131 (487)
T PLN02676 73 ---------GVSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ----- 131 (487)
T ss_pred ---------CeEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH-----
Confidence 234566 4777642 34677888888876542 22221 222333355443 11 1100
Q ss_pred hHhHHHHHHHHHHHHhhcccCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881 172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (523)
Q Consensus 172 ~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~efl~~~~-l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~ 248 (523)
.-.+.+.++.+++....... . ..++.+.++ .+++.+.. ....... ..+......+..++ ..+|+.
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~ 199 (487)
T PLN02676 132 -KSMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLK 199 (487)
T ss_pred -HHHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchh
Confidence 00111112222221221100 0 012334555 33344322 2221111 11111101011111 123332
Q ss_pred HHHHHHHHHHHhhhcccCCCccEEee--cCCcChHHHHHHHHHHH------cCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 009881 249 DGINRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (523)
Q Consensus 249 ~~l~~~~~~l~s~g~~g~~~~~~~~p--~gG~~eL~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~ 320 (523)
..+. ......+|. .-.+. ++|++.|+++|++.... .++.|+||++|++|..+ ++. +.|.+.
T Consensus 200 ~~~~-----~~~~~~~g~---~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~ 268 (487)
T PLN02676 200 NTEP-----NPTFVDFGE---DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTE 268 (487)
T ss_pred hcCc-----ccccccCCC---ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEEC
Confidence 2110 001111221 12233 68999999988875422 23689999999999876 333 568888
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (523)
Q Consensus 321 ~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (523)
+|++++||+||+. |...+.+..+.++|+||+.+....++..++.+.|.++.+++||=+
T Consensus 269 ~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~ 327 (487)
T PLN02676 269 DGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP 327 (487)
T ss_pred CCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence 9999999999964 444333312467888988776655555678899999999998643
No 25
>PLN02529 lysine-specific histone demethylase 1
Probab=99.77 E-value=2.9e-16 Score=173.54 Aligned_cols=279 Identities=13% Similarity=0.104 Sum_probs=163.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (523)
...||+|||+|++||.||..|+++|++|+++|+++++||++.|..+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 467999999999999999999999999999999999999999876421
Q ss_pred cccCCCceEEecCCCeEEecCh--HHHHHHhcCCcccccccccccce-eeeccCCceeecCCCHHHHHhcccCChHhHHH
Q 009881 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (523)
Q Consensus 101 ~~~~~r~f~ldl~GP~ll~~~~--~lv~lL~~~~~~~ylef~~~~~~-~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~ 177 (523)
....+.+|+ |+++++... ++..+..+.++.-+ .++.. .++..+|+....... . .+ ...
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~-----~~----~~~ 267 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--S-----NI----EFI 267 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--h-----hH----HHH
Confidence 001246787 688886533 45556656665332 11121 133345543311110 0 00 011
Q ss_pred HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhccCCCcchhhhhcchHHHH
Q 009881 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (523)
Q Consensus 178 L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~------l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l 251 (523)
+.+++..+..+..... ....+.|+.+|+++.. +++..+.++.+.++...+....+ ++.
T Consensus 268 ~~~~l~~~~~l~~~~~---------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~---- 331 (738)
T PLN02529 268 FNKLLDKVTELRQIMG---------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSD---- 331 (738)
T ss_pred HHHHHHHHHHHHHhcc---------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHH----
Confidence 2222222222211000 1245688999997543 55555555443222111111100 111
Q ss_pred HHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009881 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (523)
Q Consensus 252 ~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI 331 (523)
..+..+....+ +. ..|....+.||++.|+++|++ +..|+||++|++|..+ ++. +.|. .+++++.||+||
T Consensus 332 LSl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VI 400 (738)
T PLN02529 332 LSAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVL 400 (738)
T ss_pred hhhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEE
Confidence 11122222111 11 113356789999999998875 3359999999999886 333 4565 356789999999
Q ss_pred EC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881 332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (523)
Q Consensus 332 ~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (523)
+. |...+....+.+.|++|+.+....++..++.+.+.++.+++++-
T Consensus 401 VTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 401 CTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW 447 (738)
T ss_pred ECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence 75 43333322234677788766665555567889999999999863
No 26
>PLN02568 polyamine oxidase
Probab=99.74 E-value=2.6e-16 Score=170.25 Aligned_cols=298 Identities=10% Similarity=0.062 Sum_probs=161.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC-----CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccce
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE 92 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G-----~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (523)
+++..+||||||+|++||+||..|++.| ++|+|+|+++++||+++++++.
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~------------------------- 55 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG------------------------- 55 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-------------------------
Confidence 3456689999999999999999999988 9999999999999999997542
Q ss_pred eccccccccccCCCceEEecCCCeEEec--ChHHHHHHhcCCccccc-cccccc----ceeeeccCCceeecCCCHHHHH
Q 009881 93 ISNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSID----ATFMLDADAKLCSVPDSRAAIF 165 (523)
Q Consensus 93 ~~~~~~~~~~~~~r~f~ldl~GP~ll~~--~~~lv~lL~~~~~~~yl-ef~~~~----~~~~~~~dg~~~~vP~s~~~if 165 (523)
.|.+|+ |+++++. ...+.+++.+.|+.... .|...+ ....+..+|.. ++. ++.
T Consensus 56 --------------g~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~---~~~ 115 (539)
T PLN02568 56 --------------GERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFE--VDP---SIV 115 (539)
T ss_pred --------------CeEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcC--CCH---HHH
Confidence 245666 5777753 34777888888875432 222111 11122223321 111 111
Q ss_pred hcccCChHhHHHHHHHHHHHHhhcccCccc-----ccccc-cc---ccccCCcHHHHHHh-cCCChhHHHHHHHHHhccC
Q 009881 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESE-----ENNVR-IS---EEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMAD 235 (523)
Q Consensus 166 ~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~-----~~~~~-~~---~~~~~~s~~efl~~-~~l~~~l~~~l~~~i~l~~ 235 (523)
. .-.+.+..++..+........+. ..... .. ....+.++.+||++ ++ ..+.....-.+ ...
T Consensus 116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~--~~~~~~~~p~~-~~~ 186 (539)
T PLN02568 116 E------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGLD--AYWDSVSADEQ-IKG 186 (539)
T ss_pred H------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHHH--HHHhhcccchh-hcc
Confidence 0 00111222232222110000000 00000 00 00123588888874 21 00000000000 000
Q ss_pred CCcchhhhhcchHHHHHHHHHHHH-----------hh---hcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCc
Q 009881 236 YDQEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301 (523)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~~~~~l~-----------s~---g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~ 301 (523)
+..+. .+.+....+..+..+.. +. ..+...+|.++...+|++.|+++|++.+ .++.|+++++
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~ 262 (539)
T PLN02568 187 YGGWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRK 262 (539)
T ss_pred ccchh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCe
Confidence 00000 00011111111111100 00 1111112346688999999999988744 3678999999
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----cccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----ASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (523)
Q Consensus 302 V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~----~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l 376 (523)
|++|..+ ++. +.|++++|+++.||+||+. |...+.+-. +.++|+||+.+....+...++.+.|.++.+++++
T Consensus 263 V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 263 VTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred EEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 9999876 333 5677889999999999974 443333210 2467788887665545555788999999999985
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.74 E-value=2.4e-16 Score=174.94 Aligned_cols=279 Identities=12% Similarity=0.106 Sum_probs=161.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (523)
...||||||||++||+||..|++.|++|+|+|+++++||+..++.+.+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 4589999999999999999999999999999999999999999876431
Q ss_pred cccCCCceEEecCCCeEEecC--hHHHHHHhcCCccccccccccccee-eeccCCceee--cCCCHHHHHhcccCChHhH
Q 009881 101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCS--VPDSRAAIFKDKSLGLMEK 175 (523)
Q Consensus 101 ~~~~~r~f~ldl~GP~ll~~~--~~lv~lL~~~~~~~ylef~~~~~~~-~~~~dg~~~~--vP~s~~~if~~~~ls~~~k 175 (523)
.-.+.+|+ |++++... ..+..++...|+..+ .+...+ ++..+|+... ++... .
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~~~v-------------~ 343 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEIDSKI-------------E 343 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhhhhH-------------H
Confidence 01234566 57887543 256666777776432 111111 2233555331 11110 1
Q ss_pred HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhccCCCcchhhhhcchHH
Q 009881 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (523)
Q Consensus 176 ~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~------~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~ 249 (523)
..+.+++..+.++..... . .....+.++.+|++++ ..++..+.++.+.++...+.... ...
T Consensus 344 ~~f~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs------~ls 410 (808)
T PLN02328 344 ASFNKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS------LMS 410 (808)
T ss_pred HHHHHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh------hHH
Confidence 223333333322211000 0 0112457888888743 23444334332222211111100 011
Q ss_pred HHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009881 250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK 329 (523)
Q Consensus 250 ~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~ 329 (523)
.+. +..+.... .+ ...+.+.+..||++.|+++|++.. + |+++++|++|..+ ++. +.| +.+|++++||+
T Consensus 411 ~LS-l~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~ 478 (808)
T PLN02328 411 NLS-MAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDM 478 (808)
T ss_pred HHH-hhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCE
Confidence 111 11111110 11 111235677899999999987643 3 8999999999886 333 345 45788999999
Q ss_pred EEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881 330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (523)
Q Consensus 330 VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (523)
||+. |...+....+.+.|++|..+....++..++.+.|.++.+++++=
T Consensus 479 VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 479 VLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred EEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 9975 44433321224667788766655455568889999999999863
No 28
>PLN03000 amine oxidase
Probab=99.71 E-value=5.5e-15 Score=164.12 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=158.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (523)
...||||||+|++||.+|..|++.|++|+|+|+++++||++.|..+++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g-------------------------------- 230 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA-------------------------------- 230 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence 468999999999999999999999999999999999999999986542
Q ss_pred cccCCCceEEecCCCeEEecCh--HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (523)
Q Consensus 101 ~~~~~r~f~ldl~GP~ll~~~~--~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L 178 (523)
....+.+|+ |.++++... .+..++.+.|+..+ .+..... ++..+|+.. |...... ....+
T Consensus 231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~---------ve~~f 292 (881)
T PLN03000 231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLK---------VEVAF 292 (881)
T ss_pred ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhh---------HHHHH
Confidence 012366788 588886544 45556667776532 2222222 233366543 2211100 00112
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHH
Q 009881 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (523)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~------~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (523)
.+++..+.++..... ....+.++.++++. ..+.+..+.++.+.++...+.... ....+.
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as------~ls~LS 357 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG------LVSKLS 357 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc------CHHHHH
Confidence 222222221111000 00113344443321 122332223222111111111000 001111
Q ss_pred HHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 253 ~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
+..+..... +.. .+......||++.|+++|++.+ .|+|+++|++|..+ ++. +.|++ +++++.||+||+
T Consensus 358 -l~~wdqd~~-~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv 425 (881)
T PLN03000 358 -LAFWDQDDP-YDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC 425 (881)
T ss_pred -HHHhhhccc-ccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence 111111111 111 1235567899999999998644 39999999999876 333 45654 456899999997
Q ss_pred C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (523)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (523)
. |...+..-.+.+.|+||+.+....++..++.+.|.++.++++|=.
T Consensus 426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~ 472 (881)
T PLN03000 426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWS 472 (881)
T ss_pred cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 5 544434212357788888777655666688999999999998643
No 29
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.71 E-value=1e-16 Score=163.54 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=74.4
Q ss_pred EEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 009881 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL 349 (523)
Q Consensus 271 ~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l 349 (523)
.+.+.|||+.|++||. .++|..|.++++|.+|.+++ +| +.|+..+.++..+|.+|+. |...+.. +.++|.+
T Consensus 201 ~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l 272 (450)
T COG1231 201 MLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLL 272 (450)
T ss_pred hhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhh--cccCCCC
Confidence 4567799999999887 57899999999999998862 43 5777666578999999975 3333333 2456666
Q ss_pred hhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881 350 QESFQAFSLSDNKGKVARGICITRSSLK 377 (523)
Q Consensus 350 ~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (523)
+..+++......++...|..+-+++||=
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFW 300 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFW 300 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhh
Confidence 6666666556678888888888999973
No 30
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.67 E-value=1.3e-14 Score=154.84 Aligned_cols=244 Identities=12% Similarity=0.170 Sum_probs=148.6
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCcccccee
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI 93 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (523)
-++...+|+|||||++||+||++|++. |++|+|+|+++++||++.++....
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------------- 72 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------------- 72 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-------------------------
Confidence 344567999999999999999999996 689999999999999998864321
Q ss_pred ccccccccccCCCceEEecCCCeEEecChHHHHHHhcC------C---ccccccccccccee----eeccCCceeecCCC
Q 009881 94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPDS 160 (523)
Q Consensus 94 ~~~~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~------~---~~~ylef~~~~~~~----~~~~dg~~~~vP~s 160 (523)
.+|.++. ||.+...-..+.++|.+. | .++|..|...++.+ ++..+|.....+
T Consensus 73 ------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~-- 137 (576)
T PRK13977 73 ------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTD-- 137 (576)
T ss_pred ------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECc--
Confidence 2344444 455432233555665332 1 23555665554442 111123222211
Q ss_pred HHHHHhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcch
Q 009881 161 RAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (523)
Q Consensus 161 ~~~if~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~ 240 (523)
.-.++.+.+..|++++- .. .++..+.++.||+++..+......+ ...+..+ .
T Consensus 138 ------~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~~---w~t~FaF--~- 189 (576)
T PRK13977 138 ------KFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWYY---WRTMFAF--E- 189 (576)
T ss_pred ------CCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHHH---HHHHHCC--c-
Confidence 01233333333444321 11 1234568999999975554332222 2222222 1
Q ss_pred hhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCC--CcEEEE
Q 009881 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKGV 317 (523)
Q Consensus 241 ~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~--g~~~gV 317 (523)
+..|+.+....+.+|+.-+.+.+.. .++.+.+|-. ..|.+.|.+.++..|++++++++|++|..+.++ +++++|
T Consensus 190 --~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI 266 (576)
T PRK13977 190 --KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI 266 (576)
T ss_pred --hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence 2357888777777777665554432 2255566653 589999999999999999999999999875223 678888
Q ss_pred EeC-CCc--E---EEcCEEEE
Q 009881 318 RLA-SGQ--D---ILSHKLVL 332 (523)
Q Consensus 318 ~l~-~G~--~---i~A~~VI~ 332 (523)
.+. +|+ + ..+|.||+
T Consensus 267 ~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 267 HLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEeCCceeEEEecCCCEEEE
Confidence 774 332 2 35777874
No 31
>PLN02976 amine oxidase
Probab=99.59 E-value=9.7e-14 Score=158.30 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=75.5
Q ss_pred cEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009881 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (523)
Q Consensus 270 ~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l 341 (523)
..+.++||++.|+++|++.. .|+||++|++|..... ++.-+.|.+.+|+++.||+||+. |-..+..-
T Consensus 927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 35678999999999887643 3999999999987310 11225677889999999999975 43333311
Q ss_pred CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (523)
Q Consensus 342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (523)
.+.+.|+||+.+....++..++.+.|.++.++++|-+
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 1357888998766654555678899999999998644
No 32
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.57 E-value=8.6e-13 Score=132.86 Aligned_cols=245 Identities=18% Similarity=0.226 Sum_probs=149.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEE--eccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~Vlv--lE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (523)
..+|+|+|||++||++|++|+|.+-+|++ +|+.+|+||...|..-+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 47999999999999999999999987654 99999999999882211
Q ss_pred ccccCCCceEEecCCCeEEecCh----HHHHHHhcCCccccc-ccccccc----eeeeccCCceeecCCCHHH-HHhccc
Q 009881 100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAA-IFKDKS 169 (523)
Q Consensus 100 ~~~~~~r~f~ldl~GP~ll~~~~----~lv~lL~~~~~~~yl-ef~~~~~----~~~~~~dg~~~~vP~s~~~-if~~~~ 169 (523)
+.|-++. ||.-+-..+ ...+++.++|+++-+ .+..-.. .+++ +.|++..+|.+... ++. .
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~--~ 128 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF--S 128 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc--c
Confidence 2222333 455443333 367788888886432 2221111 3343 47899999987544 221 2
Q ss_pred CChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881 170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (523)
Q Consensus 170 ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~ 248 (523)
+.+.-|..+..|+....+... ..+..|+++.+|.++ |+ +++.+.++.++.-+.|..|+ .++|.+
T Consensus 129 l~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk 193 (491)
T KOG1276|consen 129 LQPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMK 193 (491)
T ss_pred cCcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHH
Confidence 233445455555542211100 123457899999984 65 66666666555555566676 447777
Q ss_pred HHHHHHHHHHHhhh---------cccC----------------CCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCcee
Q 009881 249 DGINRLALYNSSIG---------RFQN----------------ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI 303 (523)
Q Consensus 249 ~~l~~~~~~l~s~g---------~~g~----------------~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~ 303 (523)
..+..+..--...| .++. ..-+.+-.+||...++++++......+..+.++-++.
T Consensus 194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~ 273 (491)
T KOG1276|consen 194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS 273 (491)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence 66655443222221 0110 0001234588899999999998888888888888888
Q ss_pred EEEEecCCCcEEEEEeCCCc
Q 009881 304 SLLTDQNSGSYKGVRLASGQ 323 (523)
Q Consensus 304 ~I~~~~~~g~~~gV~l~~G~ 323 (523)
.+.....++-..+.+..+++
T Consensus 274 ~~sk~~~~~~~~tl~~~~~~ 293 (491)
T KOG1276|consen 274 GNSKSRSGNWSLTLVDHSGT 293 (491)
T ss_pred cccccccCCceeEeEcCCCc
Confidence 87654323333455555565
No 33
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=6.1e-14 Score=149.60 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=75.2
Q ss_pred EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 009881 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ 350 (523)
Q Consensus 272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~ 350 (523)
....+|...+.++++. |..|+++..|.+|.... ++. +.|+..++..+.+|+||+. |-..+..-.+.+.|++|
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 3567888888876654 99999999999999873 443 3455566666999998853 33332321246778888
Q ss_pred hhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCC
Q 009881 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP 389 (523)
Q Consensus 351 ~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~ 389 (523)
..++...++-..+.+.+.++.+++.+=..........+.
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~ 323 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE 323 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence 877776555556778899988898764322234445553
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.54 E-value=6.9e-14 Score=146.85 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=87.0
Q ss_pred cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhc
Q 009881 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF 356 (523)
Q Consensus 278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l 356 (523)
.+.+.+.+...+...|++|++|++|++|..+ +++ +.|.+.+|+++.||+||++ |...+.+ +...++++......
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGG-VTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSE-EEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--ccc-cccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence 4444555556667789999999999999987 555 4677899999999999975 3333222 12344555533332
Q ss_pred ccCCCcceEEEEEEEecCCCCCCC-CceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEE-eec---cccch
Q 009881 357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA-LCD---EVNQG 431 (523)
Q Consensus 357 ~~~~~~~~v~r~i~i~~~~l~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st-~~~---~~~~~ 431 (523)
.+...+..+.+..+.+++++.+.. ....++.++.. ....++...+...+. +.+..+..... ... .....
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 356 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGF-----SPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSD 356 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESST-----SSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCH
T ss_pred ccccccCcceeEEEeeecccccccccccceecccCc-----cccccccccccCccc-ccCCcceeeeeccccchhcccch
Confidence 233335566777777888865443 23333333321 223445555544444 44433333322 111 12233
Q ss_pred HHHHHHHHHHHHhh
Q 009881 432 KKLLHAALSALQKL 445 (523)
Q Consensus 432 ~~~l~~~~~~l~~~ 445 (523)
++.++.+++.|-..
T Consensus 357 e~~~~~~~~~L~~~ 370 (450)
T PF01593_consen 357 EEILERVLDDLRKI 370 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhc
Confidence 45566665555543
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=126.64 Aligned_cols=294 Identities=16% Similarity=0.137 Sum_probs=160.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (523)
...+|.|||+|++||+||..|++. .+|+++|++++.||+.+|...+-
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~-------------------------------- 53 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT-------------------------------- 53 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc--------------------------------
Confidence 346899999999999999999875 68999999999999999975321
Q ss_pred cccCCCceEEecCCCeEEecC---hHHHHHHhcCCcccccccccccceeeeccCCcee-ecCCCHHHHHhc--ccCChHh
Q 009881 101 LSQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC-SVPDSRAAIFKD--KSLGLME 174 (523)
Q Consensus 101 ~~~~~r~f~ldl~GP~ll~~~---~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~-~vP~s~~~if~~--~~ls~~~ 174 (523)
...++.+|. | .++|.. -.+..++...|+.....|.+..- .++ +|.+. .--.....+|.. ..+.+
T Consensus 54 ---d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~p-- 123 (447)
T COG2907 54 ---DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRP-- 123 (447)
T ss_pred ---cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccch--
Confidence 011233444 2 333322 26788888888876655544321 112 23221 110111123321 11122
Q ss_pred HHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHH
Q 009881 175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254 (523)
Q Consensus 175 k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~ 254 (523)
++.++++.+......... ..+ .....+.++.+||++.+.+...++-.++-++-..++... ..++...+ ..+
T Consensus 124 --Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~--~d~~~~pa-~~~ 194 (447)
T COG2907 124 --RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPL--ADASRYPA-CNF 194 (447)
T ss_pred --hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcH--hhhhhhhH-HHH
Confidence 222222222221111000 011 123456899999999999988776555432221122110 01111111 223
Q ss_pred HHHHHhhhcccCCCccEEe-ecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-
Q 009881 255 ALYNSSIGRFQNALGALIY-PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL- 332 (523)
Q Consensus 255 ~~~l~s~g~~g~~~~~~~~-p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~- 332 (523)
..|..-.|..--...+.++ ..||+.+-.| |+++..+|.+.++++|.+|..-. +|+ .|...+|++-+.|.||+
T Consensus 195 ~~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vViA 268 (447)
T COG2907 195 LVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVIA 268 (447)
T ss_pred HHHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeeee
Confidence 3444433322111122444 5678888888 55678899999999999998753 553 34446799888899884
Q ss_pred -CCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881 333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (523)
Q Consensus 333 -~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (523)
.|+..+. ++. + +-|++.+.+.. ...+-.+++.-+|..+.|
T Consensus 269 th~dqAl~-mL~--e-~sp~e~qll~a--~~Ys~n~aVlhtd~~lmP 309 (447)
T COG2907 269 THPDQALA-LLD--E-PSPEERQLLGA--LRYSANTAVLHTDASLMP 309 (447)
T ss_pred cChHHHHH-hcC--C-CCHHHHHHHHh--hhhhhceeEEeecccccc
Confidence 4665532 221 2 22444443321 122345667777877665
No 36
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=2.6e-11 Score=126.42 Aligned_cols=249 Identities=18% Similarity=0.183 Sum_probs=137.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (523)
.|+|+|||++||+||..|+++|++|+++|+++++||+++++.... ++|.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~E----------------------------- 51 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHVE----------------------------- 51 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCeee-----------------------------
Confidence 599999999999999999999999999999999999999987532 11111
Q ss_pred CCCceEEecCCCeEEe-cChHHHHHHhcCCcccccccccccceeeec--cCCcee--ecCCC------HHHHHhcccCCh
Q 009881 104 HPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL 172 (523)
Q Consensus 104 ~~r~f~ldl~GP~ll~-~~~~lv~lL~~~~~~~ylef~~~~~~~~~~--~dg~~~--~vP~s------~~~if~~~~ls~ 172 (523)
. |=++++ +--.++.+|.+.+.+..+..++....++-. ..|.+- ..|.. ..+.++.+.+..
T Consensus 52 --~-------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 52 --H-------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred --e-------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 1 112221 223677777777776555555443333211 112111 11111 112333333333
Q ss_pred HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-H---HHHHHhccCCCcchhhhhcchH
Q 009881 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-I---VLYAIAMADYDQEVSEYVLKTR 248 (523)
Q Consensus 173 ~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~-~---l~~~i~l~~~~~~~~~~~~s~~ 248 (523)
.+|.. |+-.+..... .....+.+..+.+|.|||++++..+.... . +.+++... ..+ ..|++
T Consensus 123 ~~~~~---~~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~--~~e----~~sa~ 187 (485)
T COG3349 123 REKIR---FVLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFI--DPE----GCSAR 187 (485)
T ss_pred HHHhH---Hhhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhccc--Ccc----cCcch
Confidence 33332 2211110000 00122345677999999998776654322 2 22332221 222 24454
Q ss_pred HHHHHHHHHHHhhhcccCCCccEEeecCCcC-hHHHHHHHHHHHcCcEEEcCCceeEEEEecC--CCcEEEEEeCCCcEE
Q 009881 249 DGINRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDI 325 (523)
Q Consensus 249 ~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~-eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--~g~~~gV~l~~G~~i 325 (523)
..+..+..++ +...+. +.....+++.. -+.+...+...+.|.+++++.+|+.|..+.. +.+++|+.+. +...
T Consensus 188 ~~lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~ 262 (485)
T COG3349 188 FFLTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQ 262 (485)
T ss_pred hHHHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-Ccce
Confidence 4444333332 222221 11234667765 4557777888889999999999999987532 3446787765 5544
Q ss_pred EcCEEE
Q 009881 326 LSHKLV 331 (523)
Q Consensus 326 ~A~~VI 331 (523)
.+...+
T Consensus 263 e~~~~~ 268 (485)
T COG3349 263 EQQAAL 268 (485)
T ss_pred Eeeehh
Confidence 444333
No 37
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.26 E-value=1.7e-10 Score=118.39 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=71.0
Q ss_pred EEeecCCcChHHHHHHHHHH----HcC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC-CCC-CC
Q 009881 271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT-VPG-SL 342 (523)
Q Consensus 271 ~~~p~gG~~eL~qal~r~~a----~~G--g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~-~~~-l~ 342 (523)
..+-.-|..++...|.+... ++| ++++++++|..|..+. +++ +.|++.||+.+.||+||+.-+.- +.+ ..
T Consensus 215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCc-EEEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence 34445566666665554222 233 5666679999998762 455 57889999999999999753311 111 01
Q ss_pred cccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC
Q 009881 343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380 (523)
Q Consensus 343 ~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~ 380 (523)
.-+.|+||..+..-.++...+.+-|..+=++.|+-|..
T Consensus 293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence 13778888877775555556778888888999876654
No 38
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.19 E-value=1.8e-10 Score=116.28 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.5
Q ss_pred EEeec-CCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~-gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
-++|. .....|.+++.+.++..|++++++++|.+|..+ + ....|.+.+|++|+||.+|+
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 36898 678999999999999999999999999999876 3 34678888898999999885
No 39
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.19 E-value=2.7e-10 Score=117.81 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=39.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
+||+|||||++|+++|..|++.|++|+|+|+++++||.+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 799999999999999999999999999999999999987664
No 40
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.17 E-value=5.6e-11 Score=92.24 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=38.1
Q ss_pred EECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc
Q 009881 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA 67 (523)
Q Consensus 27 IIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~ 67 (523)
|||+|++||++|.+|+++|++|+|+|+++++||+++++..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence 89999999999999999999999999999999999997653
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.15 E-value=3.4e-10 Score=116.19 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.0
Q ss_pred EEeecCC---cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG---~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
+.+|.+| ...+.++|.+.++..|++++.+++|++|..+ ++++.+|++.+|+ ++||+||+.
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 5678888 5799999999999999999999999999987 7777789998887 999999954
No 42
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.01 E-value=2.4e-09 Score=104.70 Aligned_cols=101 Identities=20% Similarity=0.356 Sum_probs=71.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (523)
.||.+|||+|++|++.|..|++.|++|+|+||++++||+|-+-..+. . .+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-------t-------------GIl--------- 51 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-------T-------------GIL--------- 51 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-------C-------------CeE---------
Confidence 48999999999999999999999999999999999999998854321 0 011
Q ss_pred ccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHH
Q 009881 102 SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA 163 (523)
Q Consensus 102 ~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~ 163 (523)
+.--||++++..+.-|--.+ .++.||.......+-..+|..+.+|.....
T Consensus 52 --------vHkYGpHIFHT~~~~Vwdyv----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t 101 (374)
T COG0562 52 --------VHKYGPHIFHTDNKRVWDYV----NQFTEFNPYQHRVLALVNGQLYPLPFNLNT 101 (374)
T ss_pred --------EeeccCceeecCchHHHHHH----hhhhhhhhhccceeEEECCeeeeccccHHH
Confidence 11127999988774433321 345566654433322238999999987643
No 43
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.97 E-value=2.4e-09 Score=112.15 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=48.2
Q ss_pred EEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
.+||.-. ...+.++|.+.+...|++++++++|++|..+ ++++..|++++++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 4689875 5799999999999999999999999999887 6677889877888999999995
No 44
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=106.26 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=50.2
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~A~~VI~~ 333 (523)
.+.|.+|. ++++.+|...+...|+.++||++|+.|.... +| .+.+.+.+|++ ++|+.||..
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence 55677773 6899999999999999999999999998873 43 45666788887 999999954
No 45
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.91 E-value=2.4e-08 Score=104.79 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=47.0
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
+++|..|. ..+.++|.+.+...|++++++++|.+|..+ +++ +.|++.+| +++||+||+.
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A 199 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC 199 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence 55677774 688999999999999999999999999765 444 46777665 7999999853
No 46
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.90 E-value=8.5e-08 Score=102.85 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=45.6
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
++.|..|. ..+.++|.+.+...|++|+.+++|.+|.. ++ .+.|++.+| +++|++||+.
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t~~g-~v~A~~VV~A 232 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQ-PAVVRTPDG-QVTADKVVLA 232 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CC-ceEEEeCCc-EEECCEEEEc
Confidence 55677774 48899999999999999999999999863 22 256776666 6999998853
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.85 E-value=9.2e-08 Score=99.71 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=44.8
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
++.|.+|. ..+.++|.+.++..|++++.+++|++|..+ +++ +.|++++| +++||+||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 44566664 478899999888999999999999999765 444 45776555 799998874
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.80 E-value=1.9e-07 Score=100.40 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=46.9
Q ss_pred eecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEC
Q 009881 273 YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD 333 (523)
Q Consensus 273 ~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~A~~VI~~ 333 (523)
++.+|...+.+.|.+.++..|++++++++|++|..+ ++++++|+.. +| ..++|+.||+.
T Consensus 125 ~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA 187 (466)
T PRK08274 125 FFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA 187 (466)
T ss_pred eecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence 344555688999999999999999999999999876 6788888763 33 35899999853
No 49
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.77 E-value=2.7e-07 Score=97.56 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=48.0
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
++.+|..|. ..+.++|.+.+...|++|+.+++|++|..+ ++++++|++. +.+++||+||+.
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~a 252 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVVA 252 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEEC
Confidence 355677664 378899999999999999999999999875 5566677765 457999999853
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.76 E-value=1.4e-07 Score=103.12 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=47.2
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 009881 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (523)
Q Consensus 270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~A~~VI~ 332 (523)
++.+|. |. ..+..++++.+..+|++++.+++|++|..+ ++++++|++. +| .+|+|++||.
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 366774 53 478888889889999999999999999876 6777788752 33 3689999884
No 51
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.72 E-value=7.8e-07 Score=97.47 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=40.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
..+.++||||||+| +|++||+.++++|.+|+||||.+.+||.+..
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 44558999999999 8999999999999999999999999997763
No 52
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.69 E-value=1.8e-07 Score=97.47 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=44.7
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
.+.|..|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++.+| +++||+||.
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~ 198 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV 198 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence 44566664 467788888888899999999999999875 443 56777666 799999884
No 53
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.66 E-value=6e-07 Score=94.65 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=46.2
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
++.+..|. ..+.++|++.+...|++++.+++|++|..+. ++++++|++.+| +++|++||+.
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~g-~i~a~~vVva 235 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTRG-FIGAKKVGVA 235 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCCc-eEECCEEEEC
Confidence 43455554 3677888888999999999999999997541 466677887666 6999988754
No 54
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.64 E-value=5e-07 Score=101.28 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=47.0
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
+++|..|. ..+.+++.+.+.. |++++.+++|++|..+ ++. +.|++.+|+.++|++||+
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~ad~VV~ 457 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDG-WQLDFAGGTLASAPVVVL 457 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCE-EEEEECCCcEEECCEEEE
Confidence 56787774 4888999998888 9999999999999875 454 457777787788999885
No 55
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.63 E-value=2.4e-08 Score=93.55 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.++||+|||+|.+||+||++|+++|+||+++|++..+||..+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 4699999999999999999999999999999999999987643
No 56
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.60 E-value=3.2e-08 Score=92.18 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.+-||||||+|.+||+||++|+++|.||+++|++.++||-.+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 467999999999999999999999999999999999988654
No 57
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.58 E-value=1.7e-06 Score=92.99 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred EEeecCC-c---ChHHHHHHHHHHH----cC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG-~---~eL~qal~r~~a~----~G--g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
.+.|..| . +.++++|.+.++. .| ++++++++|+.|..+ ++..+.|++.+| +++||+||+.
T Consensus 199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva 268 (497)
T PTZ00383 199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS 268 (497)
T ss_pred EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence 5567553 3 5899999999888 77 678999999999875 455677887666 6999998864
No 58
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=2.9e-06 Score=83.96 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCC
Q 009881 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFT 337 (523)
Q Consensus 281 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-~p~~~ 337 (523)
-..+|...++.+|++++-|..|..+....+++..++|++++|..+.|+++|+ ...|+
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 3466778888999999999999999865557777899999999999999885 34454
No 59
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.50 E-value=1.7e-06 Score=92.13 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
+.+.++||+|||||++|+-+|+.++.+|++|+++|++|.-.|-.+..
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs 54 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS 54 (532)
T ss_pred ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence 44578999999999999999999999999999999999987765543
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.47 E-value=1.4e-07 Score=99.12 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=40.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+|||||||||++|++||+.|+++|.+|+++|+++.+|.+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 5699999999999999999999999999999999999997765
No 61
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.44 E-value=2.1e-07 Score=91.62 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||+|||+|.+||+||++|+++|++|+++||+..+||..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46999999999999999999999999999999999998763
No 62
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.42 E-value=2.5e-07 Score=98.27 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
.+|||||||||++|++||+.|+++|++|+++||++.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999988764
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.41 E-value=2.7e-07 Score=91.07 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||+|||+|++|++||+.|+++|++|+++|++..+||..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 46899999999999999999999999999999999998854
No 64
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.40 E-value=1.3e-05 Score=84.13 Aligned_cols=241 Identities=12% Similarity=0.161 Sum_probs=125.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (523)
+.++-|||+|+++|+||+.|-|. |.+|.+||+.+..||........+ ..|+..++-..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~-~GYv~RgGR~~----------------- 63 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE-NGYVIRGGRMM----------------- 63 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC-CCeeecCCccc-----------------
Confidence 35788999999999999999886 569999999999999987654221 12333322100
Q ss_pred ccccccCCCceEEecCCCeEEecChHHHHHHhc------CC---ccccccccccccee----eeccCCceeecCCCHHHH
Q 009881 98 SRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLK------SG---ASHYLEFKSIDATF----MLDADAKLCSVPDSRAAI 164 (523)
Q Consensus 98 ~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~------~~---~~~ylef~~~~~~~----~~~~dg~~~~vP~s~~~i 164 (523)
-..-..+.++|.. -+ .+.+.+|..-++.+ +...+|+....
T Consensus 64 --------------------~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~------- 116 (500)
T PF06100_consen 64 --------------------EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT------- 116 (500)
T ss_pred --------------------cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc-------
Confidence 0000111222110 00 01111221111111 11112322111
Q ss_pred HhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhh
Q 009881 165 FKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYV 244 (523)
Q Consensus 165 f~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~ 244 (523)
...-.|+.+++..|+|++-. .. +...+.++.||+..-.+.- +|..+.-.+. ..++ .
T Consensus 117 ~~~~~Ls~k~r~eL~kL~l~---~E-------------~~L~~~~I~d~F~~~FF~S---nFW~~W~T~F--AFqp---W 172 (500)
T PF06100_consen 117 DSKFGLSEKDRMELIKLLLT---PE-------------EDLGDKRIEDWFSESFFES---NFWYMWSTMF--AFQP---W 172 (500)
T ss_pred cCcCCCCHHHHHHHHHHhcC---CH-------------HHhCcccHHHhcchhhhcC---chhHhHHHhh--ccCc---c
Confidence 11124556666667776531 10 1223455666665321111 1222111121 1121 1
Q ss_pred cchHHHHHHHHHHHHhhhcccCCCccEEeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCC--cEEEEEe-C
Q 009881 245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-A 320 (523)
Q Consensus 245 ~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g--~~~gV~l-~ 320 (523)
-|+.+.-..+.+|+.-+.++.. ..++.+.+|-. ..|..-|.+-.+..|+++++|+.|+.|..+.+++ .+.++.+ .
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~-l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~ 251 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLND-LSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ 251 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCC-ccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc
Confidence 2455554556666655544332 12356677764 5899999999999999999999999998864333 2334444 4
Q ss_pred CCcE--E---EcCEEEE
Q 009881 321 SGQD--I---LSHKLVL 332 (523)
Q Consensus 321 ~G~~--i---~A~~VI~ 332 (523)
+|+. | .-|.|++
T Consensus 252 ~g~~~~i~l~~~DlV~v 268 (500)
T PF06100_consen 252 DGKEETIDLGPDDLVFV 268 (500)
T ss_pred CCCeeEEEeCCCCEEEE
Confidence 5542 3 2466764
No 65
>PRK10015 oxidoreductase; Provisional
Probab=98.39 E-value=3.1e-07 Score=97.50 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+.+|||||||+|++|++||+.|+++|++|+++||++++|-.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 35699999999999999999999999999999999887643
No 66
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.38 E-value=3.3e-07 Score=87.93 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=42.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~ 68 (523)
.+++|||+|++|++||..|+.+|++|+|+||..-+|||.+|-.+++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 3699999999999999999999999999999999999999977654
No 67
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.32 E-value=5.4e-07 Score=96.68 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=41.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
.+..|||||||+|.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 3567999999999999999999999999999999999999987543
No 68
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.32 E-value=6.2e-07 Score=94.71 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=39.3
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 13 ~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
|+.|.-.+..+||+|||||++|+++|..|+++|++|+|+|+++..
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 445555566799999999999999999999999999999998754
No 69
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.30 E-value=5.7e-07 Score=96.62 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
|.+|||||||+|.+|+.||.++++.|++|+++|+++.+||.|..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 35699999999999999999999999999999998899998744
No 70
>PRK07121 hypothetical protein; Validated
Probab=98.29 E-value=1e-06 Score=95.29 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.++||||||+|.+|++||+.++++|.+|+||||+...||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 479999999999999999999999999999999999998653
No 71
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.27 E-value=6.9e-07 Score=91.48 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
++||||||||++||++|+.|+|+|++|+|+|+++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 479999999999999999999999999999998654
No 72
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.26 E-value=8.6e-07 Score=94.76 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=40.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
...+|+|||||.+||+||..|.+.|.+|+++|+++.+||.|..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 3579999999999999999999999999999999999999865
No 73
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.26 E-value=7.2e-07 Score=94.74 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=34.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
||||||||.+|++||++++|+|.+|+++|+++.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 74
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.26 E-value=7.9e-07 Score=94.89 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~-~~GG~~~s 63 (523)
++|||||||+|.+|+.||.+|++.|++|+++|+.+ .+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 56999999999999999999999999999999987 48998754
No 75
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.26 E-value=1e-06 Score=93.95 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.-+++...+|||||||||++|++||..|+++|++|+++|++.
T Consensus 31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345577778999999999999999999999999999999975
No 76
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.24 E-value=1.2e-05 Score=85.67 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=48.7
Q ss_pred EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 009881 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (523)
Q Consensus 272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~~i~A~~VI~ 332 (523)
.++.+|...+.++|.+.++..|++|+++++|++|..+.+++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 45666667899999999999999999999999998752246778887543 45799999985
No 77
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.2e-06 Score=93.34 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCcccccccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~GG~~~s~~~~~ 68 (523)
.++..||+|||||.+|+.+|.+|.++|.. +++|||++.+||.|+....++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 35679999999999999999999999999 999999999999998866544
No 78
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.23 E-value=1.2e-06 Score=87.57 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
|||+|||||++|+++|+.|++.|.+|+|+|++...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999988765
No 79
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.23 E-value=1.1e-06 Score=93.83 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC-CCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~-~GG~~~ 62 (523)
.+|||||||+|.+|+.||..|++.|++|+++|+++. +||.|-
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 469999999999999999999999999999999875 799754
No 80
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.22 E-value=1.3e-06 Score=94.86 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=38.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
+..|||||||||+.|+.+|+.|++.|++|+++||++..+|..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 356999999999999999999999999999999998877655
No 81
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.21 E-value=1.4e-06 Score=91.16 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=36.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
+++..+||||||+|++||++|+.|+++|.+|+|+|+++..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3556799999999999999999999999999999998765
No 82
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.4e-06 Score=93.47 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
|.+|||||||+|.+|+.||.+|++.|++|+++|+ +.+||.|..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 3569999999999999999999999999999999 789998754
No 83
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.20 E-value=2.3e-06 Score=92.86 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
+.++||||||+|.+|++||+.++++|.+|+||||....||...
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 3578999999999999999999999999999999999999643
No 84
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=1.6e-06 Score=93.34 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 4699999999999999999999999999999999999997643
No 85
>PRK06116 glutathione reductase; Validated
Probab=98.17 E-value=1.5e-06 Score=92.91 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 4699999999999999999999999999999996 89997743
No 86
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.17 E-value=1.7e-06 Score=92.81 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.|||||||+|.+|+.||..|++.|++|+++|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 48999999999999999999999999999999 889998764
No 87
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.16 E-value=2.1e-06 Score=93.17 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=38.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
++.+|||||||||+.|+.+|+.|++.|.+|++|||++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 35669999999999999999999999999999999987655443
No 88
>PTZ00058 glutathione reductase; Provisional
Probab=98.16 E-value=2.3e-06 Score=93.55 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=41.4
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 15 ~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
++.-...+|||||||+|.+|..||.++++.|++|+++|++ .+||.|-.
T Consensus 41 ~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 41 LKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred cccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 4443445799999999999999999999999999999996 79998754
No 89
>PRK06370 mercuric reductase; Validated
Probab=98.16 E-value=2.1e-06 Score=92.25 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=39.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
++.+|||||||+|.+|+.||.+|++.|++|+++|+. ..||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 456799999999999999999999999999999986 67777654
No 90
>PRK08013 oxidoreductase; Provisional
Probab=98.15 E-value=2e-06 Score=90.61 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
|.++||+|||||++|+++|++|++.|++|+|+|+++..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 34689999999999999999999999999999998753
No 91
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.15 E-value=2.3e-06 Score=90.35 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
+||||||||+.|+++|+.|++.|++|+||||++..|+.++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as 41 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS 41 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence 6999999999999999999999999999999997765443
No 92
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.14 E-value=1.9e-06 Score=92.08 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
+|||||||+|.+|+.||.++++.|++|+++|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 59999999999999999999999999999999 589998764
No 93
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.13 E-value=2.3e-06 Score=91.90 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+|||||||+|.+|+.||..|++.|++|+++|++. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999987 9997754
No 94
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.13 E-value=1.9e-06 Score=91.22 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.5
Q ss_pred CcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009881 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (523)
Q Consensus 277 G~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~A~~VI~ 332 (523)
+...+.+.|.+.++.+|++|+++++|++++++ +++++||... +|+ +|+|+.||+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence 34689999999999999999999999999998 7899999875 455 478999885
No 95
>PRK09126 hypothetical protein; Provisional
Probab=98.13 E-value=2.3e-06 Score=89.62 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=34.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
++||||||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 689999999999999999999999999999999875
No 96
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.12 E-value=1.8e-06 Score=81.68 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred EEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccc
Q 009881 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS 63 (523)
Q Consensus 26 IIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~GG~~~s 63 (523)
+|||||++||++|+.|.+.|.+ |+++|+++.+||.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999885
No 97
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.12 E-value=2.4e-06 Score=91.45 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
+|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence 599999999999999999999999999999995 68997753
No 98
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.11 E-value=2.2e-06 Score=86.21 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009881 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~ 61 (523)
||+||||+|.+|+++|.+|+++| ++|+|||+..++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 79999999999999999999998 6999999988776655
No 99
>PLN02463 lycopene beta cyclase
Probab=98.11 E-value=3.5e-06 Score=89.70 Aligned_cols=47 Identities=30% Similarity=0.626 Sum_probs=40.3
Q ss_pred cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 9 ~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
...+|.+.+-....+||||||||++||++|+.|+++|++|+++|+++
T Consensus 15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 34555566656667999999999999999999999999999999975
No 100
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.11 E-value=2.6e-06 Score=89.12 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..+||+|||||++||++|++|++.|++|+++|+++
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 45899999999999999999999999999999874
No 101
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=3.1e-06 Score=91.15 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4799999999999999999999999999999996 88998864
No 102
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.09 E-value=2.9e-06 Score=92.19 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n-~~~GG~ 60 (523)
+.+|||||||||++|+.||++++|.|++|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45699999999999999999999999999999998 477763
No 103
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.09 E-value=3.3e-06 Score=88.61 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
..+.++|.+.++..|.+++.++.|+++..+ ++. +.|++++|++++||.||.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIA 163 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEE
Confidence 467777878888889999999999999865 343 457778899999999984
No 104
>PRK07045 putative monooxygenase; Reviewed
Probab=98.09 E-value=3.1e-06 Score=88.71 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=40.5
Q ss_pred hHHHHHHHHHH-HcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 280 eL~qal~r~~a-~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
.|-+.|.+.++ ..|.++++++.|+.|..+. ++.++.|++++|++++||.||.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIg 159 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVG 159 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEE
Confidence 56666666654 3578999999999998752 5555678888999999999994
No 105
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=3.3e-06 Score=90.75 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|...
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 4699999999999999999999999999999985 788877543
No 106
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.09 E-value=3.6e-06 Score=88.28 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
|||||||||++|+++|..|++.|++|+++|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 107
>PRK14694 putative mercuric reductase; Provisional
Probab=98.09 E-value=3.4e-06 Score=90.76 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
+..+|||||||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 456799999999999999999999999999999996 69998754
No 108
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.08 E-value=3.2e-06 Score=89.17 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45689999999999999999999999999999996
No 109
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.08 E-value=3.3e-06 Score=88.55 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=33.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..++||||||||++|+++|+.|+++|++|+++|++.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 456999999999999999999999999999999975
No 110
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.07 E-value=3.5e-06 Score=84.55 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
|||||||+|++|+.+|..|++.|++|+++|+++ .||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886643
No 111
>PRK13748 putative mercuric reductase; Provisional
Probab=98.07 E-value=3.4e-06 Score=92.83 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 5799999999999999999999999999999997 89998754
No 112
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.06 E-value=4e-06 Score=88.26 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+||||||||++|++||..|+++|++|+++|++...+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~ 38 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP 38 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC
Confidence 69999999999999999999999999999998765433
No 113
>PLN02661 Putative thiazole synthesis
Probab=98.06 E-value=3.8e-06 Score=85.45 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS 59 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG 59 (523)
++||+|||+|++|+.+|+.|+++ |++|+++|++..+||
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 58999999999999999999986 999999999999987
No 114
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.05 E-value=4e-06 Score=89.36 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~A~~VI~ 332 (523)
.++.+.|.+.++..|.+++++++|++|+.++ ++++++|++. +|+ .+.||.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence 4788999999999999999999999998863 5778887653 343 368899884
No 115
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=4.6e-06 Score=89.88 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEecc------CCCCCCCcccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL 64 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~------n~~~GG~~~s~ 64 (523)
.+|||||||+|.+|+.||.+|++.|++|+++|+ +..+||.|...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 469999999999999999999999999999998 46789987543
No 116
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.05 E-value=4.2e-06 Score=91.00 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||||||+| +|++||+.++++|.+|+||||.+.+||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 47899999999 99999999999999999999999999865
No 117
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.04 E-value=2.9e-06 Score=87.42 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=42.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~ 65 (523)
.+-.-+++|||||++|++||+.|++.|++|.++||++.+||+.+.++
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 33456899999999999999999999999999999999999988765
No 118
>PLN02697 lycopene epsilon cyclase
Probab=98.04 E-value=6.1e-06 Score=89.36 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=37.3
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 13 ~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
|+++ .....+||||||+|++||++|++|++.|++|+++|+....+
T Consensus 100 ~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~ 144 (529)
T PLN02697 100 PPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 144 (529)
T ss_pred CCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC
Confidence 3444 34456999999999999999999999999999999864443
No 119
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.04 E-value=4e-06 Score=87.39 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
..+-+.|.+.+...| ++++.++.|++|..+ ++. +.|++.+|+++.||.||.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVG 157 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEE
Confidence 467777878777777 899999999999765 444 467778999999999884
No 120
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.04 E-value=5.8e-06 Score=94.94 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+..||+|||||.+|++||..|++.|++|+|+|+++.+||..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 35689999999999999999999999999999999999998754
No 121
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.04 E-value=4.8e-06 Score=91.35 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--CCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~--~~GG~~~ 62 (523)
.++||||||+|.+||+||+.++++|.+|+||||.+ .+||+..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899654
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.04 E-value=4.7e-06 Score=87.24 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
||||||+|++|+++|+.|++.|++|+++|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999887764
No 123
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.04 E-value=4.6e-06 Score=87.23 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
.+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5899999999999999999999999999999998753
No 124
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.03 E-value=4.7e-06 Score=87.45 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
...||+|||||++||++|..|+++|++|+|+||++..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3579999999999999999999999999999998754
No 125
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.03 E-value=5.3e-06 Score=91.49 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=40.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
+..++||||||+|.+|++||+.++++|.+|+|+||....||...
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 44579999999999999999999999999999999999999764
No 126
>PRK07236 hypothetical protein; Provisional
Probab=98.03 E-value=5.1e-06 Score=87.02 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
|...||||||||++||++|..|++.|++|+|+|+++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5568999999999999999999999999999999864
No 127
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.02 E-value=4.7e-06 Score=83.68 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
.....||||||||.+|+++|++|+|.|++|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 446799999999999999999999999999999985
No 128
>PRK06184 hypothetical protein; Provisional
Probab=98.02 E-value=5.1e-06 Score=90.18 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=35.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
|+++||+|||||++||++|+.|++.|.+|+|+||++.+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 45789999999999999999999999999999998765
No 129
>PLN02985 squalene monooxygenase
Probab=98.01 E-value=7e-06 Score=89.06 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=36.5
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
+......+||||||||++|+++|++|+++|++|+++||...
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 34456678999999999999999999999999999999754
No 130
>PRK12831 putative oxidoreductase; Provisional
Probab=98.01 E-value=7.2e-06 Score=87.98 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=41.7
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
+...+..||+|||+|.+||+||..|++.|++|+++|+++.+||.+.
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 3445678999999999999999999999999999999999999874
No 131
>PRK06185 hypothetical protein; Provisional
Probab=98.00 E-value=5.9e-06 Score=87.08 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..++||+|||||++|+++|+.|+++|.+|+++|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999863
No 132
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.00 E-value=6.9e-05 Score=80.19 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=48.9
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI 331 (523)
.+.|.-|. ..+.|++++.+...|+.|.-+++|++|.+. +++..+|++.-|. |+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence 44577774 589999999999999999999999999987 5566799977665 8899988
No 133
>PRK14727 putative mercuric reductase; Provisional
Probab=97.99 E-value=5.5e-06 Score=89.35 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
+..+||||||+|.+|+.+|..|++.|++|+++|+++.+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 34689999999999999999999999999999999999998865
No 134
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.99 E-value=6.9e-06 Score=85.75 Aligned_cols=59 Identities=32% Similarity=0.363 Sum_probs=46.1
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
+.+|..|. ..+.+++++.+...| ..+..+++|..+..+ . +.++|.+.+|. +.|++||+.
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a 207 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA 207 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence 55677775 478899999999999 556669999998654 3 56788877777 999999964
No 135
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.99 E-value=6e-06 Score=88.68 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
|||||||+|.+|+.||.+|++.|++|+++|++. +||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 799999999999999999999999999999976 7887643
No 136
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.99 E-value=5.4e-06 Score=87.36 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI-~~p 334 (523)
.+-++|.+.++..|.+++.++.|.++..+ ++. +.|++++|++++||.|| ++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG 165 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG 165 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 56677777777789999999999999765 333 46777899999999999 444
No 137
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.99 E-value=7.5e-06 Score=80.76 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=37.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC--CCCCc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF 61 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~--~GG~~ 61 (523)
++.++||||||+|++||.||+.|+.+|++|+++|+... +||.+
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 35679999999999999999999999999999998753 56653
No 138
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=6.1e-06 Score=87.17 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
+...+|+|||||.+||++|+.|.+.|++|+++||.+.+||.|.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 345799999999999999999999999999999999999999864
No 139
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.98 E-value=6.4e-06 Score=90.41 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
..|||||||||.+|++||..|++.|++|+++|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3599999999999999999999999999999996 68987653
No 140
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.98 E-value=7.5e-06 Score=84.96 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
+||||||+|+.|+++|+.|++.|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 141
>PRK06834 hypothetical protein; Provisional
Probab=97.97 E-value=7.7e-06 Score=88.31 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
|+++||||||+|++|+++|+.|++.|.+|+|+|+++.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4679999999999999999999999999999999875
No 142
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.97 E-value=6.7e-05 Score=80.24 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI-~~ 333 (523)
..+-+-|.+.+...|.+++-++ |..+..+. +|.+++|++.+|++++||.|| ++
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECC
Confidence 5777888888999999998875 88887774 788889999999999999999 54
No 143
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.97 E-value=6.4e-06 Score=86.46 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.+||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999874
No 144
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.97 E-value=7.4e-06 Score=89.90 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||||||+|.+|++||+.|+++|++|+|||+++.+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 47899999999999999999999999999999999999965
No 145
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.96 E-value=7e-06 Score=86.05 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCeEEEeccC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN 54 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~---G~~VlvlE~n 54 (523)
|..+||+|||||++|+++|+.|+|+ |.+|+|+|++
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4568999999999999999999998 9999999996
No 146
>PRK07190 hypothetical protein; Provisional
Probab=97.96 E-value=7.9e-06 Score=88.19 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
+..+||||||||++||++|+.|++.|.+|+++||++.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 45689999999999999999999999999999999875
No 147
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=8.8e-06 Score=89.91 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=40.2
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
+|...++||||||+|.+||.||+.++++|.+|+||||+...||.+
T Consensus 7 ~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 7 SLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred CcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 566677999999999999999999999999999999998777744
No 148
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.95 E-value=7.1e-06 Score=85.62 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009881 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (523)
Q Consensus 279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI-~~p 334 (523)
.++.+.|.+.+.. .|++++.++.|++|..+ ++. +.|++++|++++||.|| ++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence 4677888777777 49999999999999765 333 46777888899999988 444
No 149
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.94 E-value=9.2e-06 Score=90.23 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
..+.+++.+.++..|++++.+++|.+|..++.++++++|++ .+|+ +++||.||.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn 290 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence 48889999999999999999999999987521366777765 2444 589999985
No 150
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.94 E-value=1.2e-05 Score=92.11 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
..+..+|+|||+|.+|++||..|++.|++|+|+|+++.+||..+.
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 446689999999999999999999999999999999999998754
No 151
>PTZ00367 squalene epoxidase; Provisional
Probab=97.93 E-value=9e-06 Score=88.92 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=35.6
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
|.....++||||||||++|+++|.+|+++|++|+|+|++.
T Consensus 27 ~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 27 PARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3344457999999999999999999999999999999975
No 152
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.93 E-value=8.6e-06 Score=88.25 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
++.+.+.+..+..|.++++++.|++|... ++. ..|++.+|+++.+|.||+.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~a 273 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLYA 273 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEEe
Confidence 57788888888899999999999998754 333 4577778999999999853
No 153
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.92 E-value=8.5e-06 Score=85.02 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+||+|||||++|+++|++|++.|++|+|+|+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 154
>PRK06847 hypothetical protein; Provisional
Probab=97.92 E-value=1.1e-05 Score=83.83 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
.++.+.|.+.+...|.++++++.|++|..+ ++. +.|.+.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 366777777777789999999999999765 333 567778999999999984
No 155
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.92 E-value=9.2e-06 Score=89.57 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||||||+|++||+||+.++++|.+|+||||.+..||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 36899999999999999999999999999999999999853
No 156
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.92 E-value=1.4e-05 Score=87.65 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+.++||+|||+|++||++|+.|++.|.+|+|+|++...+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~ 48 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL 48 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 46689999999999999999999999999999999876543
No 157
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.92 E-value=1e-05 Score=85.77 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=41.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
+.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 457999999999999999999999999999999999999988664
No 158
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.91 E-value=9.1e-06 Score=85.22 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=43.6
Q ss_pred CcChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 009881 277 GQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP 334 (523)
Q Consensus 277 G~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~A~~VI-~~p 334 (523)
...+|-++|.+.+...+ .+++.++.|+.+..+ ++.+. |+++ +|++++||.|| +|.
T Consensus 102 ~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 102 PRSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence 35677788888887777 699999999999886 44444 7777 99999999999 454
No 159
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.91 E-value=1.5e-05 Score=87.50 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC--CCCcccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL 64 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~--GG~~~s~ 64 (523)
+.++||+|||||++||++|+.|++.|.+|+|+||++.. +++...+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l 67 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF 67 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEE
Confidence 35689999999999999999999999999999999865 4444443
No 160
>PRK06753 hypothetical protein; Provisional
Probab=97.91 E-value=9.5e-06 Score=84.43 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 38999999999999999999999999999999865
No 161
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.1e-05 Score=81.40 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~ 65 (523)
+..+||||||+|.+||+||.+++|+|.++.+++.....||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 3579999999999999999999999999555666677887666544
No 162
>PRK06126 hypothetical protein; Provisional
Probab=97.90 E-value=1.1e-05 Score=88.39 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.+.++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45578999999999999999999999999999999874
No 163
>PLN02507 glutathione reductase
Probab=97.90 E-value=1.2e-05 Score=87.18 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
.++.+.+.+..+..|.++++++.|+++..+ ++. +.|.+.+|+++.+|.||+.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a 295 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA 295 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence 467777777788899999999999999754 333 4566778889999999854
No 164
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=1.3e-05 Score=88.57 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=39.0
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
|...++||||||+|.+||.||+.++++|.+|+++||....||.
T Consensus 3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4456789999999999999999999999999999999887774
No 165
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=1.2e-05 Score=88.74 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
...||||||+|++||.||+.++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4569999999999999999999999999999999987764
No 166
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=1.3e-05 Score=89.18 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=37.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+..++||||||+|++||.||+.++++|.+|+++||+...||.
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 345689999999999999999999999999999999876653
No 167
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=1.3e-05 Score=88.76 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=39.4
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+.+...++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus 6 ~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 6 YKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 344556799999999999999999999999999999998776664
No 168
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.88 E-value=1.7e-05 Score=84.79 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=40.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
..++.+||+|||+|.+|+.+|..|++.|++|+++|+++.+||.+.
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 345678999999999999999999999999999999999999764
No 169
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=1.3e-05 Score=88.05 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=37.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
..++||||||+|.+||.||+.++++|.+|+++||....||..
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 356899999999999999999999999999999998777744
No 170
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.88 E-value=1.1e-05 Score=85.94 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~----~G~~VlvlE~n~~ 56 (523)
|||+|||||++|+++|+.|++ +|.+|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 699999999999999999999 8999999999653
No 171
>PRK12839 hypothetical protein; Provisional
Probab=97.88 E-value=1.5e-05 Score=87.64 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=40.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.++||||||+|.+|++||+.|+++|.+|+++||+..+||.+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 4799999999999999999999999999999999999997653
No 172
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.88 E-value=1.1e-05 Score=84.59 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999874
No 173
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.87 E-value=1.4e-05 Score=92.26 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=40.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
++..+|+|||+|.+||+||..|++.|++|+|+|+++++||..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4568999999999999999999999999999999999999865
No 174
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.87 E-value=1.4e-05 Score=83.33 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009881 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH 60 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~ 60 (523)
||||||||++||++|.+|+++ |++|+++|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999988 9999999999988774
No 175
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.86 E-value=1.7e-05 Score=88.80 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+..+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 45679999999999999999999999999999999999998653
No 176
>PRK07538 hypothetical protein; Provisional
Probab=97.86 E-value=1.3e-05 Score=84.76 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
.||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998654
No 177
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.86 E-value=1.6e-05 Score=87.23 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.++||||||+|.+|++||+.++++|.+|++|||+..+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 468999999999999999999999999999999999988643
No 178
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.85 E-value=1.9e-05 Score=88.06 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 15 ~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.+.+.++..+|+|||+|.+||++|..|++.|++|+++|+++.+||.++
T Consensus 303 ~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 303 VSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 334445678999999999999999999999999999999999999875
No 179
>PRK08244 hypothetical protein; Provisional
Probab=97.85 E-value=1.4e-05 Score=86.51 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=33.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
++||+|||||++||++|+.|++.|.+|+|+||++..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999998753
No 180
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.85 E-value=1.5e-05 Score=87.18 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
.++||||||+|++||.||+.+++.|.+|+++||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999987774
No 181
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.85 E-value=1.3e-05 Score=84.15 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
..+.+.|.+.+...|.+++.+++|+++..+ ++. +.|++++|+++.||.||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence 467777878777889999999999999765 333 467778899999999984
No 182
>PRK11445 putative oxidoreductase; Provisional
Probab=97.84 E-value=1.4e-05 Score=82.56 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
.|||+|||+|++||++|+.|+++ ++|+++|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999754
No 183
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.84 E-value=1.6e-05 Score=85.75 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
.++.+.+.+..+..|..+++++.|++|..+ ++....|++.+|+++.+|.||+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~ 282 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM 282 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence 477888888889999999999999999754 2333456677888999999985
No 184
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.84 E-value=1.4e-05 Score=86.16 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=45.8
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009881 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (523)
Q Consensus 270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~~ 333 (523)
+.+.|..|. ..+.++|.+.++..|++++++++|++|..+. ++. +.|++ .+|+ +++|++||+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence 355677774 6899999999999999999999999998652 333 33432 2342 6899999854
No 185
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.83 E-value=1.7e-05 Score=82.78 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.7
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCeEEEeccCCCC
Q 009881 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~L--a~~G~~VlvlE~n~~~ 57 (523)
||||||+|++||++|.+| ++.|++|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999999887
No 186
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.83 E-value=1.6e-05 Score=85.75 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=38.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~ 62 (523)
.+..+||||||||+.|+++|+.|++. |++|+||||++.+|+..+
T Consensus 2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 34568999999999999999999984 899999999988776543
No 187
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.83 E-value=1.8e-05 Score=87.83 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
..|.++|.+.+...|.+++.++.|.+++.++ +|+++||.. .+|+ .|+|+.||+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL 223 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVI 223 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEE
Confidence 4788999998888999999999999998742 788888864 3564 578999884
No 188
>PLN02546 glutathione reductase
Probab=97.81 E-value=1.9e-05 Score=86.29 Aligned_cols=44 Identities=27% Similarity=0.160 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC---------CCCCCCcccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSSL 64 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n---------~~~GG~~~s~ 64 (523)
.+|||||||+|.+|..||..|++.|++|+++|++ ..+||-|-..
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 4699999999999999999999999999999973 5688877553
No 189
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.81 E-value=2.5e-05 Score=84.14 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
....||+|||+|.+|+++|..|++.|++|+++|+++++||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999754
No 190
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.81 E-value=2.4e-05 Score=86.34 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=40.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+.++||||||+|.+|+++|..++++|++|++|||++.+||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 345799999999999999999999999999999999999997653
No 191
>PRK02106 choline dehydrogenase; Validated
Probab=97.80 E-value=2.1e-05 Score=86.63 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~ 56 (523)
..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 456999999999999999999999 8999999999854
No 192
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.80 E-value=2.9e-05 Score=85.62 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.++||||||+|.+|++||+.++++|++|++|||++..||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 3689999999999999999999999999999999999997653
No 193
>PRK07588 hypothetical protein; Provisional
Probab=97.80 E-value=1.9e-05 Score=82.83 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.||+|||||++||++|+.|++.|.+|+++|+++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3899999999999999999999999999999864
No 194
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.80 E-value=2.3e-05 Score=91.36 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.+..||+|||+|.+||+||..|++.|++|+|+|+++++||..+
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 4568999999999999999999999999999999999999765
No 195
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.79 E-value=2.4e-05 Score=91.42 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
..+||+|||||.+||+||..|++.|++|+++|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999997754
No 196
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.79 E-value=2.5e-05 Score=79.70 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=34.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+-+||||||||+||++|.+|+|.|++|+|+|++.-+=|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 358999999999999999999999999999998866444
No 197
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.78 E-value=2.2e-05 Score=85.51 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
...+||+|||||.+|++||.+|++.|++|+++|++ +||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 44699999999999999999999999999999864 999875
No 198
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.78 E-value=2.2e-05 Score=83.54 Aligned_cols=58 Identities=9% Similarity=0.136 Sum_probs=43.3
Q ss_pred eecCCc-ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEe-CCCc--EEEcCEEEE
Q 009881 273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL 332 (523)
Q Consensus 273 ~p~gG~-~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~A~~VI~ 332 (523)
++.... .++.++|.+.++. .|.+++++++|..|..+ ++++++|.. .+|+ +++|+.||+
T Consensus 121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 444444 3788888877765 58999999999999876 677888653 3554 589999985
No 199
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.78 E-value=2e-05 Score=85.55 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.|+|||||.+||++|..|.+.|.+|+++||++.+||.|+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 6999999999999999999999999999999999999974
No 200
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.78 E-value=2.3e-05 Score=87.09 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||||||+|++||.||+.++++|.+|+|+||....||.+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 45899999999999999999999999999999998877743
No 201
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.77 E-value=2.3e-05 Score=85.78 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
-..++||||||+|++|+.||+.++ .|.+|+++||.+..||..
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 345789999999999999999986 599999999999888853
No 202
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=2.5e-05 Score=86.98 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
.++||||||+|.+||.||+.++++|.+|+|+||+..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 3689999999999999999999999999999999888644
No 203
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=2.8e-05 Score=85.80 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCCc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G---~~VlvlE~n~~~GG~~ 61 (523)
-.++||||||+|.+||.||+.++++| .+|+++||....||.+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 34689999999999999999999998 8999999999877743
No 204
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.74 E-value=2.9e-05 Score=86.28 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n-~~~GG~~~s 63 (523)
.+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 3789999999999999999999999999999984 579997754
No 205
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.74 E-value=2.7e-05 Score=86.90 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
..|..+|.+.+...|..++.++.|.+|+.+ +|+++||.. .+|+ .++|+.||+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL 214 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI 214 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 478888888888899999999999999986 788888765 3565 368999885
No 206
>PRK05868 hypothetical protein; Validated
Probab=97.74 E-value=3e-05 Score=80.87 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
.||+|||+|++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998754
No 207
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.74 E-value=4e-05 Score=75.93 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=41.3
Q ss_pred CccCCCC--CCCCCCC----CcccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCC
Q 009881 7 ESELPVP--PYPPIEP----TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGS 59 (523)
Q Consensus 7 ~~~~~~~--~~~~l~~----~~~DVIIIGaGl~GL~aA~~La~----~G~~VlvlE~n~~~GG 59 (523)
+.++|.| ...+++. .+.||+|||+|..|++.|.+|.+ .|.+|+|+|+++.|--
T Consensus 65 t~~~Pi~~~~~~~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 65 TRRLPIAHMKHGTLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred cccCCCcccccccccccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 4556665 3445544 36899999999999999999854 4799999999998733
No 208
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=2.5e-05 Score=86.13 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=45.4
Q ss_pred eecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 273 ~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
++..++ ..|.++|.+.+...|.+++.++.|.++..+ +|++.||.. .+|+ .++|+.||+
T Consensus 128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl 191 (575)
T PRK05945 128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF 191 (575)
T ss_pred ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence 444433 478899998888899999999999999876 778887753 3565 589999985
No 209
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.73 E-value=2.8e-05 Score=85.65 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
..|.++|.+.+...|.+++.++.|++|..+ +|+++||.. .+|+ .++|+.||+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 185 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL 185 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence 368888888888889999999999999887 788888764 3565 589999885
No 210
>PLN02815 L-aspartate oxidase
Probab=97.73 E-value=2.9e-05 Score=85.58 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=36.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
++||||||+|++||.||+.+++.| +|++|||....||..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 899999999988843
No 211
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.73 E-value=3e-05 Score=80.96 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
.||+|||||++|+.||+.|++.|++|+++|+++...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 5999999999999999999999999999999876543
No 212
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.72 E-value=3.3e-05 Score=83.66 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
|||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999866
No 213
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.72 E-value=4.7e-05 Score=81.67 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
....+|+|||+|.+|+.+|..|++.|++|+++|+++++||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4457999999999999999999999999999999999999754
No 214
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.71 E-value=3.2e-05 Score=81.48 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
-+|+|||||++||++|++|++.|++|+|+|+++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998643
No 215
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=4.2e-05 Score=87.08 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
..+..||+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 34568999999999999999999999999999999999999865
No 216
>PRK10262 thioredoxin reductase; Provisional
Probab=97.71 E-value=3.4e-05 Score=78.68 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
..+||+|||+|.+|+.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887644
No 217
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.70 E-value=5.1e-05 Score=81.38 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~--~G~~VlvlE~n~~~GG~~~s 63 (523)
.....+|+|||+|.+|+.||..|++ .|++|+++|+.+.+||..+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3445789999999999999999987 79999999999999998875
No 218
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.70 E-value=5e-05 Score=81.65 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.++..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus 138 ~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 138 VPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 34668999999999999999999999999999999999999764
No 219
>PRK06996 hypothetical protein; Provisional
Probab=97.70 E-value=3.7e-05 Score=80.94 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009881 17 PIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF 56 (523)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G----~~VlvlE~n~~ 56 (523)
++.+..+||+|||||++|+++|+.|++.| ++|+++|+.+.
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 46667899999999999999999999997 47999999764
No 220
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.69 E-value=5.1e-05 Score=84.49 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC--CCCccc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSS 63 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~~--GG~~~s 63 (523)
+.++||+|||||++||++|+.|++ .|.+|+|+|+++.. .|+.-.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~g 76 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADG 76 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeE
Confidence 467999999999999999999999 59999999998643 455443
No 221
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.68 E-value=3.9e-05 Score=82.97 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCC-C--cEEEcCEEEE
Q 009881 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~A~~VI~ 332 (523)
..|.++|.+.+.. .|.+++.++.|.+|..+ ++++++|...+ + ..++|+.||+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl 183 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence 4788999888877 68999999999999876 67788876543 3 3689999885
No 222
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.68 E-value=3.8e-05 Score=80.62 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
||+|||||++|+.+|.+|++.|++|+++|+++..|-..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~ 39 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA 39 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence 89999999999999999999999999999988876543
No 223
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.67 E-value=4.1e-05 Score=90.83 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
..++||||||+|.+|++||+.++++|.+|++|||.+..||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 3469999999999999999999999999999999999999753
No 224
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.66 E-value=4.3e-05 Score=82.13 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~ 62 (523)
..+||||||||+.|+++|+.|++. |++|+|+||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 457999999999999999999999 999999999777776544
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.66 E-value=4.7e-05 Score=82.88 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
...+||+|||||.+|++||.+|++.|++|+++|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4569999999999999999999999999999985 6899775
No 226
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.66 E-value=4.7e-05 Score=80.52 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCC
Q 009881 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH 60 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~ 60 (523)
+|+|||||++||++|..|+++| .+|+|+||++.++..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~ 39 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV 39 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC
Confidence 6999999999999999999998 599999999876543
No 227
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.65 E-value=4.4e-05 Score=84.43 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
....+|+|||||++||++|++|+|.|.+|+|+||+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 356899999999999999999999999999999975
No 228
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.64 E-value=4.7e-05 Score=84.43 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG 59 (523)
.++||||||+|.+||.||+.++++ |.+|+++||+...|+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 468999999999999999999998 999999999987544
No 229
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.64 E-value=5.2e-05 Score=84.83 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
+..+|+|||+|.+||++|..|++.|++|+++|+++++||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999874
No 230
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.63 E-value=5.1e-05 Score=82.48 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.++||||||+|.+||.||+.+++ |.+|+++||....||..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 36799999999999999999976 99999999999888753
No 231
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.62 E-value=4.5e-05 Score=78.90 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 281 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
..+.+.+.++..+..-+....|+.|..+ +++++||++.+|+.+.||.||+
T Consensus 97 y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEE
Confidence 3344445555566666678899999887 7899999999999999999885
No 232
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.61 E-value=5.8e-05 Score=81.47 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=37.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCCccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS 63 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~--------~~GG~~~s 63 (523)
+||+||||+|.+|+.||..+++.|++|+++|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999742 58887644
No 233
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.59 E-value=5.6e-05 Score=74.75 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEE-ECCCCC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFT 337 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~--i~A~~VI-~~p~~~ 337 (523)
.+-+.+-|..+..||.++-+-+|...... +|++..|-+.++.. ++|+.+| ...++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence 67888999999999999999999999887 78888888877765 5788877 445544
No 234
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.58 E-value=6.2e-05 Score=82.53 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
.++.+.|.+.+...|.++++++.|+++..++ +++++||.. .+|+ .|+|+.||+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 4788888888888899999999999998872 344888753 4564 589999985
No 235
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.58 E-value=6.4e-05 Score=82.95 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=36.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~ 61 (523)
.++||||||+|++||.||+.++++| .+|+++||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 4589999999999999999999874 7999999998887744
No 236
>PRK08275 putative oxidoreductase; Provisional
Probab=97.58 E-value=6.5e-05 Score=82.53 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=43.0
Q ss_pred cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
..++.+.|.+.+...|.+++.++.|.+|..++ +|+++||.. .+|+ .++|+.||+
T Consensus 136 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 136 GHDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred hHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 34788899888888999999999999998752 577888763 3565 478999885
No 237
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.57 E-value=4.2e-05 Score=80.59 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=48.6
Q ss_pred EeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 009881 272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG 340 (523)
Q Consensus 272 ~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-~p~~~~~~ 340 (523)
.||... ..++.+++.+.++..|.++++++.|++|..+ ++ .+.|++ +++++.||.||+ .....+|.
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ 163 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence 466554 4689999999999999999999999999654 33 356776 677899999985 34333343
No 238
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.56 E-value=7.4e-05 Score=78.83 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL 332 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~A~~VI~ 332 (523)
++.++|.+.++..|+++++++.|.++..+ ++++..|...+|+ .++||.||+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence 89999999999999999999999999876 5666666555554 489999885
No 239
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.55 E-value=0.00011 Score=79.36 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 446999999999999999999999999999999999999764
No 240
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.55 E-value=8.5e-05 Score=80.99 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=41.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
+...++||||||+|.+||.||..++.+|.+|+++||....||+...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 4556799999999999999999999999999999999999876544
No 241
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.53 E-value=7.7e-05 Score=82.20 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.3
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~ 61 (523)
++||||||+|++||.||+.++++ |.+|+++||....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 57999999999888854
No 242
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.53 E-value=8.8e-05 Score=79.73 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
..+.+.|.+.+...|.+++.+ .|..+..+ ++++++|.. +|+.++|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 478899999998899998865 78888765 678888875 677899999985
No 243
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.52 E-value=9.2e-05 Score=81.79 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~---g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
..|.++|.+.+...|.+++.++.|.+++.++ + |+++||.. .+|+ .++|+.||+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 200 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF 200 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence 4788999888888999999999999998762 2 78888864 3565 478999985
No 244
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.52 E-value=8.9e-05 Score=81.10 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
+.++||||||+|++||.||+.+++. .+|+++||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3468999999999999999999986 899999999988874
No 245
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.49 E-value=0.00019 Score=74.81 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=45.7
Q ss_pred EeecCCc----ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEC
Q 009881 272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD 333 (523)
Q Consensus 272 ~~p~gG~----~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-----~G~~i~A~~VI~~ 333 (523)
.+...|+ |+|.+.|.+.+... |..+++++.|+.|.... +|. +.|.+. +.++++|+.|+++
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence 4556775 79999999988887 99999999999998863 443 455432 2356999999875
No 246
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.00011 Score=78.72 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=35.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
+|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 79999999999999999999999999999975 7776654
No 247
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.47 E-value=0.00013 Score=68.73 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
||||||+|.+|+.||..|++.|++|+++|+++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987654
No 248
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.46 E-value=9.5e-05 Score=80.78 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
..++|+||||+|.+|+++|.+|++.|++|++||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 45799999999999999999999999999999985
No 249
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.42 E-value=0.00018 Score=74.34 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 36899999999999999999999999999999999999764
No 250
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.38 E-value=0.00028 Score=56.31 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=33.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
|+|||+|..|+-+|..|++.|++|+++|+++++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 7999999999999999999999999999999987
No 251
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.38 E-value=0.00025 Score=78.13 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
...+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 456899999999999999999999999999999999999764
No 252
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00019 Score=80.50 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 10 ~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
|-+| -||...+-+.|.|||+|.+||.||..|-|+|+.|+|+||.|++||....
T Consensus 1774 wm~p-~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1774 WMKP-CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CCcc-CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 4444 3455567789999999999999999999999999999999999998764
No 253
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.37 E-value=0.00022 Score=75.82 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
++-..+...|.|||+|.+||++|..|+++|++|+++|+.+..||+...
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 333455589999999999999999999999999999999999999875
No 254
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.36 E-value=0.00026 Score=80.52 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=38.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
.++...|+|||+|.+|++||..|++.|++|+++|+.+..|+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 346789999999999999999999999999999998877665
No 255
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.36 E-value=0.00016 Score=73.44 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=44.1
Q ss_pred CcccEEEECCChhHHHHHHHHhh----C--CCeEEEeccCCCCCCCccccc------ccch-hhhhccC
Q 009881 21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IADL-THFLNSH 76 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~----~--G~~VlvlE~n~~~GG~~~s~~------~~~~-~~~~~~~ 76 (523)
.++||+|||+|.+||+||++|.+ + -.+|.|+||...+||+.-+-. ++++ ++|-++.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~ 143 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDG 143 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcC
Confidence 46999999999999999999854 2 458999999999999987643 2332 4676654
No 256
>PRK07846 mycothione reductase; Reviewed
Probab=97.35 E-value=0.00019 Score=76.82 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=33.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
+||+||||+|.+|..||.+ ..|++|+++|+ +.+||-|-.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence 4899999999999988866 46999999998 5688877554
No 257
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.35 E-value=0.00016 Score=79.04 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~ 56 (523)
|+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999999 69999999754
No 258
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.33 E-value=0.00022 Score=78.90 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCeEEEeccCCCC
Q 009881 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La----~~G~~VlvlE~n~~~ 57 (523)
||||||+|.+||.||+.++ ++|.+|+++||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998863
No 259
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.33 E-value=0.0002 Score=76.68 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 64 (523)
+|||||||+|.+|..||++ ..|++|+++|+ +.+||.|-.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence 5999999999999888654 46999999998 5789988654
No 260
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.32 E-value=0.00018 Score=78.25 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 009881 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A~~VI~ 332 (523)
..+.++|.+.+... |.+++.++.|.++..+ +|+++||...+ ++ .++|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 47889998888765 8899999999999776 67888887543 33 589999985
No 261
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.28 E-value=0.00026 Score=77.11 Aligned_cols=38 Identities=34% Similarity=0.330 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
|||||||+|++|+.||.++++.|++|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 69999999999999999999999999999998544433
No 262
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.26 E-value=0.00026 Score=71.39 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.++||+|||+|.+|-.||...++.|.+...+|+|..+||-|-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5799999999999999999999999999999999999998754
No 263
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.26 E-value=0.00022 Score=78.93 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
|||||+|.+||.||+.++++|.+|+|+||+..+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 799999999999999999999999999999976543
No 264
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.24 E-value=0.0003 Score=81.59 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.++||||||+|.+||.||+.+++.|.+|+++||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999885
No 265
>PRK13984 putative oxidoreductase; Provisional
Probab=97.24 E-value=0.00037 Score=77.50 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.+..+|+|||+|.+|+++|..|++.|++|+++|++++.||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3567999999999999999999999999999999999999764
No 266
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.23 E-value=0.00033 Score=75.39 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
.++.+.+.+..+..|..+++++.|++|..+ ++. +.|.+.+|+++.+|.||+.
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a 269 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMA 269 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEe
Confidence 367777778888899999999999999754 333 3566778999999998854
No 267
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.22 E-value=0.0003 Score=80.23 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~ 57 (523)
.+|+|||||++||++|+.|++. |++|+|+|+++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 3799999999999999999998 8999999999863
No 268
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.21 E-value=0.00034 Score=68.83 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=47.1
Q ss_pred CCCCCccCCCCCC-CCCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009881 3 GNESESELPVPPY-PPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 3 ~~~~~~~~~~~~~-~~l~~~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~s 63 (523)
.|.++-.+|...- -+.+...||.||||+|+.|++.|..|.-. +.+|.|||+...++=+.+.
T Consensus 28 ~~~~t~~R~i~gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg 91 (453)
T KOG2665|consen 28 WNLITIKRGISGGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG 91 (453)
T ss_pred ccccceeccccCCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence 4445555555532 35677889999999999999999998877 9999999998777655444
No 269
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.19 E-value=0.00048 Score=73.26 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHH-hhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~L-a~~G~~VlvlE~n~~~GG~~~s 63 (523)
....|+|||+|.+|+.||..| ++.|++|.++|+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 346799999999999999975 5679999999999999999875
No 270
>PLN02785 Protein HOTHEAD
Probab=97.17 E-value=0.00037 Score=76.82 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46999999999999999999999 699999999753
No 271
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.13 E-value=0.00043 Score=72.49 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF 336 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~A~~VI~-~p~~ 336 (523)
..|.++|.+.++..||+++.+..|.++..+ ++++++|.+.++ .+++||+||+ ...+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 488899999999999999999999999876 677778876666 4799999885 4445
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.00067 Score=71.69 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
+..|||||||||++|+-||++.||.|.+++++=-|
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 35699999999999999999999999999988654
No 273
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.80 E-value=0.0013 Score=64.99 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=36.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
-|||||+|++||+|+..+-..|-.|++||++...||+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999999999999999999754
No 274
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.68 E-value=0.0017 Score=68.06 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
||+|||+|++||++|+.|++. ++|+|+=|+..-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999999 999999998764
No 275
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.66 E-value=0.021 Score=57.76 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s 63 (523)
.+..+-|||+|++||++|..|-|. |+++.++|--+..||..-.
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 346789999999999999999765 7899999999999997644
No 276
>PRK09897 hypothetical protein; Provisional
Probab=96.58 E-value=0.0023 Score=69.54 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCC-CC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG-SH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~G-G~ 60 (523)
++|+|||+|.+|+.+|..|.+.+. +|+|+|++..+| |.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 589999999999999999988754 899999999999 54
No 277
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.56 E-value=0.0027 Score=66.83 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p 334 (523)
++.+.+.+.++..|.++++++.|++|.. ++. +.|.+.+|+++.||.||+..
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECC
Confidence 5556677777889999999999999853 222 45778899999999999754
No 278
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.47 E-value=0.0026 Score=67.84 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p 334 (523)
.++.+.+.+.++..|.++++++.|++|.. +++...|.+ +++++.||.||+..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a~ 242 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVAT 242 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEECc
Confidence 46778888888899999999999999943 344455654 55679999998643
No 279
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.42 E-value=0.0042 Score=67.28 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~ 57 (523)
....||.||||||-+|+++|++|++. -.+||+||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34579999999999999999999998 6899999996544
No 280
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0034 Score=65.17 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=32.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
..+.|||||||||++|.-||++.||-|-+.++|-.|
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 356799999999999999999999999988887664
No 281
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0034 Score=62.53 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (523)
...-+||.||||+|-+||++|-..++-|++|.+||-
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 344579999999999999999999999999999995
No 282
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.37 E-value=0.0042 Score=66.01 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p 334 (523)
++.+.+.+..+..|.++++++.|++|. .+ .|.+++|+++.||.+|..+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~~ 276 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWST 276 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEcc
Confidence 577777788899999999999999984 22 3567899999999998653
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.29 E-value=0.004 Score=65.13 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~ 62 (523)
.+|+|||+|..|+.+|..|++.|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 6999999999999999999999999999999999999875
No 284
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.11 E-value=0.006 Score=65.10 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p 334 (523)
.++.+.+.+..+..|.++++++.|++|. .. .|++++|+++.+|.||+..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a~ 237 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEGV 237 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEECc
Confidence 3677778888888999999999999983 22 3566788899999998643
No 285
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.95 E-value=0.0026 Score=59.33 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~ 61 (523)
+-||||||+|-+||+||+..+++ ..+|.++|+.--+||-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 36999999999999999999855 68999999999998754
No 286
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.90 E-value=0.0098 Score=60.98 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=34.4
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCC
Q 009881 16 PPIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPF 56 (523)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~ 56 (523)
-+.+...|||||+|||+.|++.|+.|..+ -+||+++|..+.
T Consensus 30 ~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 30 KSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 34455589999999999999999999865 589999999843
No 287
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.87 E-value=0.0094 Score=59.77 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=40.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s 63 (523)
.+||..|||+|-+|+.+|.+.+.-|.+|.++|..-.+||-|-.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 4799999999999999999999999999999999999997754
No 288
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.0099 Score=59.19 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
.--|.|||+|++|+-||+.++++|.+|.+.|-++.=+--+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 3468999999999999999999999999999997766443
No 289
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.74 E-value=0.032 Score=56.74 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=50.0
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
+++|..|. ..+.+++.+.+...|++++.+++|+.|..+ ++++++|.+.+| +++||+||+.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a 188 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA 188 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence 55677774 689999999999999999999999999876 666778886555 8999999853
No 290
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.55 E-value=0.0067 Score=64.04 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=35.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
+|||+|||||-.|.-+|+-.+-.|.+|.++|++|+--|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 59999999999999999999999999999999997544
No 291
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.53 E-value=0.014 Score=54.58 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||.|..||.+|+.||++|++|+-+|.|..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999864
No 292
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.33 E-value=0.018 Score=59.65 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~ 335 (523)
++.+.+.+.++..|.++++++.|++|. ++ .|.+.+|+++.+|.||+.+.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG 240 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence 566777788889999999999999883 22 46678899999999997544
No 293
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.16 E-value=0.023 Score=51.51 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009881 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF 56 (523)
Q Consensus 26 IIIGaGl~GL~aA~~La~~-----G~~VlvlE~n~~ 56 (523)
+|||+|++|++++..|.+. ..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999888 568999999766
No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.03 E-value=0.028 Score=58.68 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV 331 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~A~~VI 331 (523)
.++.+...+..+..|.+++++++|++|.. + +|.+.+|+ +|.|+.+|
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv 255 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV 255 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence 36777777888999999999999999843 2 46677887 49999999
No 295
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.93 E-value=0.031 Score=51.98 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|..|...|..++++|++|.++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 37899999999999999999999999999975
No 296
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.81 E-value=0.018 Score=56.37 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=36.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCCcc
Q 009881 23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G------~~VlvlE~n~~~GG~~~ 62 (523)
..++|||+|+.|..+|++|++.+ ..|+++|+....||...
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 68999999999999999999999 89999999999888643
No 297
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.73 E-value=0.034 Score=58.44 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 469999999999999999999999999999999887653
No 298
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.69 E-value=0.089 Score=54.90 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=51.3
Q ss_pred ecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009881 274 PIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (523)
Q Consensus 274 p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~ 336 (523)
|.-|+ -++.+.+.+.+..+|++|+.++.|..|.+. ++.+.+|++++|++|.||+||+.|-.
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence 44565 467788888889999999999999999987 66678899999999999999987654
No 299
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.55 E-value=0.042 Score=49.88 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 47899999999999999999999999999976
No 300
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.06 Score=58.16 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
....|+|||+|.+|+.+|..|++.|++|.++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 345799999999999999999999999999998764
No 301
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=94.20 E-value=0.24 Score=51.40 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=69.9
Q ss_pred cCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHH
Q 009881 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (523)
Q Consensus 206 ~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal 285 (523)
...|..|||++.++++...+-+..+....+|.++. .+ ..+...+...|. ..| .+-++||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~a---~~g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAGA---TGG-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeeec---cCC-ceEecCCHHHHHHHH
Confidence 45788999999999988876666666667777642 12 222222222221 122 467899999999977
Q ss_pred HHHHHHcCcEEEcCCceeEEEEecCCCc-EEEEEeCC--CcE-EEcCEEEECCC
Q 009881 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLDPS 335 (523)
Q Consensus 286 ~r~~a~~Gg~~~L~~~V~~I~~~~~~g~-~~gV~l~~--G~~-i~A~~VI~~p~ 335 (523)
.+ .-|+.+ +++.|++|.....++. ...|...+ +.. -..|.||+..+
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtP 184 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATP 184 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCC
Confidence 64 678899 9999999933222332 23444332 222 23599986533
No 302
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.059 Score=56.76 Aligned_cols=41 Identities=24% Similarity=0.493 Sum_probs=35.4
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccc
Q 009881 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s 63 (523)
.++|+|||+|.+|+..|..|.+. ++ |.++|+++..|+-...
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~GiaY 45 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAY 45 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCccC
Confidence 37999999999999999999776 34 9999999999876553
No 303
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.14 E-value=0.067 Score=54.38 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
++....|.|||+|.-|...|.+|+++|++|+++.++.
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3455689999999999999999999999999999864
No 304
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.05 E-value=0.064 Score=55.96 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
.+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 47999999999999999999999999999999887543
No 305
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.033 Score=55.90 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
..|||+|||+|.+|-+||.+.+|+|.+.=++- ++.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence 45999999999999999999999999876653 5688864
No 306
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.99 E-value=0.054 Score=54.91 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
+|.|||+|+-|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999863
No 307
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.94 E-value=0.068 Score=55.76 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~ 335 (523)
++.+.+.+.++..|.+++++++|++|..+ ++ .+.|.+.+|+++.||.||+..-
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~-~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DS-GIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CC-EEEEEEcCCcEEECCEEEECcC
Confidence 56667777788899999999999999754 33 3467788999999999996543
No 308
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.87 E-value=0.12 Score=53.84 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=48.1
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
+++|..|. ..+.++|.+.+.. |++++.+++|.+|..+ +++ ++|++.+|+.++||+||+
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~ 184 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL 184 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence 56777775 5888999988888 9999999999999865 444 678888888899999885
No 309
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.82 E-value=0.083 Score=47.26 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
|.|+|+|-.|+..|++|+++|++|.++.++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999864
No 310
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.81 E-value=0.044 Score=56.40 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=27.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~ 56 (523)
.+|+|+||.|..+|++|++|...+ .+++.+|+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999987 99999999764
No 311
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.082 Score=53.86 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCcccc
Q 009881 22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL 64 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~--~G~~VlvlE~n~~~GG~~~s~ 64 (523)
...|.|||+|.+|..+|..|-+ .+..|.++|+.+.++|..+.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 4589999999999999998887 479999999999999998763
No 312
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.70 E-value=0.087 Score=56.16 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 47999999999999999999999999999999987554
No 313
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.60 E-value=0.078 Score=57.12 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 5799999999999999999999999999999987643
No 314
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.52 E-value=0.081 Score=56.76 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
.|.|||.|.+|+++|..|.+.|++|++.|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 3899999999999999999999999999998765
No 315
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.46 E-value=0.088 Score=56.46 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 5899999999999999999999999999999988754
No 316
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.06 E-value=0.12 Score=55.52 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-+|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 57999999999999999999999999999999887543
No 317
>PRK06370 mercuric reductase; Validated
Probab=93.01 E-value=0.12 Score=55.43 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-+|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 57999999999999999999999999999999987654
No 318
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.95 E-value=0.1 Score=52.42 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999999854
No 319
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.90 E-value=0.13 Score=51.68 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|.-|...|..|+++|++|.++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 320
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.88 E-value=0.11 Score=54.89 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..|.|||.|..|+..|..|+++|++|..+|++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5699999999999999999999999999998764
No 321
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.86 E-value=0.14 Score=54.72 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.....|+|+|+|..|+.+|..|++.|++|+++|+++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345679999999999999999999999999999975
No 322
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.82 E-value=0.13 Score=59.29 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p 334 (523)
+..+.+.+..+..|.++++++.|++|..+. ++....|.+++|+++.+|.||+.+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence 455667788889999999999999996532 234567888899999999999643
No 323
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.78 E-value=0.12 Score=55.07 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4799999999999999999999999999999988754
No 324
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.78 E-value=0.13 Score=55.17 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999988753
No 325
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.75 E-value=0.14 Score=54.90 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 47999999999999999999999999999999887543
No 326
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.66 E-value=0.14 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999987654
No 327
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.66 E-value=0.15 Score=54.93 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987543
No 328
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.57 E-value=0.13 Score=49.59 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+++|||+|--|...|..|++.|+.|+++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999975
No 329
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.57 E-value=0.33 Score=52.92 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=47.3
Q ss_pred EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009881 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~A~~VI~ 332 (523)
+.+| .|. ..+..++.+.+..+|++++.+++|++|..+ ++++++|++. +|+ +|+|++||.
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 6677 453 488899999999999999999999999876 6777777753 353 689999884
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.54 E-value=0.15 Score=54.63 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 5799999999999999999999999999999998765
No 331
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.54 E-value=0.15 Score=54.92 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 5799999999999999999999999999999988754
No 332
>PRK07846 mycothione reductase; Reviewed
Probab=92.54 E-value=0.15 Score=54.71 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 579999999999999999999999999999998775
No 333
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.54 E-value=0.15 Score=51.11 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||+|.-|.-.|..|+++|++|+++|.++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 689999999999999999999999999998864
No 334
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.54 E-value=0.14 Score=55.00 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4799999999999999999999999999999887644
No 335
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.48 E-value=0.12 Score=59.19 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~ 335 (523)
++.+.+.+..+..|..+++++.|++|.. +++..+|++++|+++.+|.||+.+.
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence 4455666777889999999999999853 3455678889999999999996543
No 336
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.40 E-value=0.47 Score=50.00 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+||+|||+|++|+++|+.|++.|++|+++|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999875
No 337
>PRK04148 hypothetical protein; Provisional
Probab=92.39 E-value=0.12 Score=45.44 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999876
No 338
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.34 E-value=0.16 Score=53.99 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998773
No 339
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.30 E-value=0.19 Score=50.49 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 340
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.25 E-value=0.18 Score=54.01 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 57999999999999999999999999999999987553
No 341
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.24 E-value=0.15 Score=51.83 Aligned_cols=33 Identities=36% Similarity=0.444 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|.-|...|..++++|++|.++|.++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 358999999999999999999999999999875
No 342
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=91.87 E-value=0.97 Score=47.09 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=46.5
Q ss_pred EEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 009881 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL 332 (523)
Q Consensus 271 ~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~A~~VI~ 332 (523)
.+||.-. ..++.++|.+.+...|.+++++++|++| + +++ ..|++.++ +.++||+||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl 135 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL 135 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence 5799766 5799999999999999999999999999 3 333 56776443 5699999985
No 343
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.84 E-value=0.22 Score=53.79 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 48999999999999999999999999999999987543
No 344
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.79 E-value=0.18 Score=51.97 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68899999999999999999999999999875
No 345
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.72 E-value=0.2 Score=50.12 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999997754
No 346
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.70 E-value=0.14 Score=50.95 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC--------CCCCCCccccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n--------~~~GG~~~s~~ 65 (523)
-+|+|||+|..|.-||....--|-+|+++|.| +.+||+..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 58999999999999999999999999999999 66888877654
No 347
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=91.70 E-value=9.6 Score=39.65 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
..+-+.+.+.++ .++++++++.|++|..+ ++ .+.|++++|++++|+.||-
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~VvD 136 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVVD 136 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEEE
Confidence 466676777777 78889999999999765 33 3567789999999999883
No 348
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.68 E-value=0.19 Score=57.70 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 3699999999999999999999999999999887643
No 349
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.67 E-value=0.2 Score=50.33 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|-.|...|..|+++|++|.+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 350
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.66 E-value=0.52 Score=44.08 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~ 333 (523)
.++.+-+.+.++.+|..+++++.|++|..+ +++ +.|++.+|++++|++||+.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA 133 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence 466777778888889889999999999887 444 7899989989999999953
No 351
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.65 E-value=0.22 Score=53.40 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 352
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.62 E-value=0.19 Score=50.50 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..|.|||+|.-|...|..|+++|++|.++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3589999999999999999999999999998763
No 353
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.39 E-value=0.21 Score=54.41 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
-+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 489999999999999999999999999999988764
No 354
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.36 E-value=0.24 Score=50.21 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~ 55 (523)
.|.|||+|..|+++|+.|++.| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5899999999999999999999 5899999875
No 355
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.16 E-value=0.26 Score=52.52 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-+|..|++.|++|+++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4799999999999999999999999999999887644
No 356
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.07 E-value=0.3 Score=52.58 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
-.++|||+|..|+-.|..|++.|.+|+++|+++++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 479999999999999999999999999999998876653
No 357
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.96 E-value=0.27 Score=49.80 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.+|.|||+|--|...|++|+++|.+|.++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999963
No 358
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.85 E-value=0.27 Score=52.69 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
-.|||||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999865
No 359
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.84 E-value=0.24 Score=52.42 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999764
No 360
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.81 E-value=0.29 Score=52.39 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 469999999999999999999999999999988764
No 361
>PRK10262 thioredoxin reductase; Provisional
Probab=90.74 E-value=0.3 Score=49.60 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
-.|+|||+|..|+-+|..|++.|++|+++++++..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998865
No 362
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.73 E-value=0.3 Score=54.72 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 4799999999999999999999999999999998765
No 363
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.70 E-value=0.63 Score=50.44 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=45.9
Q ss_pred ccEEeecCCc---ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009881 269 GALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (523)
Q Consensus 269 ~~~~~p~gG~---~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~~ 333 (523)
++.+.|.+|. +.+.++|.+.++..| ++++++++|++|..+. +++ +.|.+ .+|+ +++|++||+.
T Consensus 170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence 3455677773 589999999998887 5999999999998752 443 33443 3464 6999998853
No 364
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.69 E-value=0.41 Score=44.00 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.5
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccC
Q 009881 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 21 ~~~DVIIIGaGl-~GL~aA~~La~~G~~VlvlE~n 54 (523)
....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999995 7999999999999999999986
No 365
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.68 E-value=0.28 Score=49.75 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 368999999999999999999999999999865
No 366
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.67 E-value=0.28 Score=49.38 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (523)
.|.|||+|..|...|..|+++|++|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 367
>PTZ00058 glutathione reductase; Provisional
Probab=90.57 E-value=0.28 Score=53.94 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4799999999999999999999999999999988653
No 368
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.55 E-value=0.28 Score=56.62 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
.++|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 689999999999999999999999999999987543
No 369
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.54 E-value=0.26 Score=50.54 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 69999999999999999999999999999853
No 370
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.42 E-value=0.36 Score=48.90 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~ 56 (523)
..|.|||+|..|+..|+.|+..|+ +|.++|.++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 368999999999999999999887 8999998543
No 371
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=90.33 E-value=0.57 Score=49.39 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
||||||+|++||+||+.++++|.+|+++||.+.+||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999999
No 372
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.33 E-value=0.31 Score=53.22 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
-+|+|||||..|+-+|..|++.|++|+++++.+.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 48999999999999999999999999999998876
No 373
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.32 E-value=0.8 Score=49.52 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009881 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~s 63 (523)
+||||||||+.|+++|+.|++. |++|+||||.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 5999999999999999999997 9999999998877754443
No 374
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.27 E-value=0.36 Score=48.57 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58999999999999999999999999999875
No 375
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.22 E-value=0.4 Score=43.99 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|+|+|+|..|..||..|.+-|.+|.++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 579999999999999999999999999999853
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.19 E-value=0.32 Score=53.62 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
-.|+|||+|..|+-.|..|++.|++|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998865
No 377
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.12 E-value=0.37 Score=51.48 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-.++|||+|..|+=.|-.+++-|-+|+++|+++++--.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence 35999999999999999999999999999999987653
No 378
>PLN02507 glutathione reductase
Probab=90.08 E-value=0.35 Score=52.52 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
-+|+|||+|..|+-.|..|++.|.+|+++++.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999988753
No 379
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.06 E-value=0.43 Score=50.90 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 47999999999999999999999999999998877543
No 380
>PRK06116 glutathione reductase; Validated
Probab=89.92 E-value=0.39 Score=51.40 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G 58 (523)
-.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 579999999999999999999999999999988764
No 381
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.81 E-value=0.39 Score=47.82 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
..|+|||+|.+|+-+|..|++.|++|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 48999999999999999999999999999998755
No 382
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.76 E-value=0.36 Score=49.87 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~ 56 (523)
-.|+|||+|..|+-+|..|++.|.+ |+++++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999997 999998765
No 383
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.76 E-value=0.36 Score=48.13 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||.|+-|...|..|+++|++|.++|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58899999999999999999999999999864
No 384
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.57 E-value=0.43 Score=48.50 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|.-|+..|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 385
>PRK12831 putative oxidoreductase; Provisional
Probab=89.57 E-value=0.39 Score=51.65 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 5899999999999999999999999999998764
No 386
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.51 E-value=0.39 Score=51.65 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~ 56 (523)
+.|.|||+|..|+.+|+.||++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999998 588999997653
No 387
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.50 E-value=0.47 Score=48.09 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999875
No 388
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.42 E-value=0.5 Score=49.33 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=35.2
Q ss_pred CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 15 ~~~l~~~~~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+-++++....|.||| .|+-|...|..|+++|+.|.++++++
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 344555667899999 89999999999999999999999865
No 389
>PRK13748 putative mercuric reductase; Provisional
Probab=89.39 E-value=0.45 Score=52.46 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
-.|+|||+|..|+-.|..|++.|++|++++++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4799999999999999999999999999998643
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.15 E-value=0.58 Score=39.61 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
|||+|.|--|..+|..|.+.|.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999985
No 391
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=89.14 E-value=0.37 Score=48.15 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=32.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF 56 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~-G~-~VlvlE~n~~ 56 (523)
...++.|+|||||-+|+..|+.+.|. |. +|-++|..++
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45789999999999999999999887 54 7999998753
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.12 E-value=0.54 Score=42.68 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (523)
++.....|+|||||-.|..-|..|.+.|.+|+|+.+
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 455667899999999999999999999999999954
No 393
>PLN02546 glutathione reductase
Probab=89.08 E-value=0.49 Score=52.08 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999887654
No 394
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.99 E-value=0.54 Score=42.79 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|-|||.|..|...|..|.++|++|.++|++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368899999999999999999999999999874
No 395
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=0.42 Score=45.42 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=34.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEecc---CCC-CCCCccc
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS 63 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~---n~~-~GG~~~s 63 (523)
.-.|+|||+|.++-+||++++|+-.|-+++|- |+. +||...|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 34899999999999999999999999999994 343 3665544
No 396
>PRK14694 putative mercuric reductase; Provisional
Probab=88.96 E-value=0.53 Score=50.67 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
-.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 479999999999999999999999999999753
No 397
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.90 E-value=0.55 Score=50.63 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=38.2
Q ss_pred cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 9 ~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.+|+.-.|.++... |.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus 4 ~~~~~~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 4 LVPLSALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred cChhhhcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 45666667777664 8999999999999999999999999999754
No 398
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.79 E-value=0.51 Score=49.19 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999864
No 399
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.76 E-value=0.57 Score=44.43 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
++.....|+|||||=.|...|..|.++|.+|+|+++.
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3455678999999999999999999999999999863
No 400
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.62 E-value=0.37 Score=40.31 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+.+...|+|||+|-.+..-+..|.+.|.+|+|+.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4456789999999999999999999999999999875
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.59 E-value=0.58 Score=44.47 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=32.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+.....|+|||+|-.|...|..|.+.|.+|+|++.+.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3445689999999999999999999999999999864
No 402
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.55 E-value=0.55 Score=48.83 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEeccC
Q 009881 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n 54 (523)
.+|+|||+|-.|+.+|..|++.| .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 47999999999999999999999 999999997
No 403
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.52 E-value=0.64 Score=47.49 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|--|...|..|+++|++|.+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 404
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.36 E-value=0.57 Score=47.82 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
++.|||+|--|.+.|..|+++|++|.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999864
No 405
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=88.25 E-value=0.44 Score=45.29 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
...|.|||+|+-|+-.|--.+.+|+.|.++|+|..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 35799999999999999999999999999999864
No 406
>PRK14727 putative mercuric reductase; Provisional
Probab=88.24 E-value=0.64 Score=50.22 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
-.|+|||+|..|+-.|..|++.|++|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 479999999999999999999999999999753
No 407
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.05 E-value=0.56 Score=49.18 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||+|..|+..|..|+. |++|+.+|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48899999999999988885 999999998764
No 408
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.03 E-value=0.64 Score=44.57 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=29.0
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.||| +|.-|.+.|..|+++|++|.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 89999999999999999999998764
No 409
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.95 E-value=0.98 Score=42.73 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+.....++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3444679999999999999999999999999999873
No 410
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.92 E-value=0.59 Score=41.35 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
++|+|+|..+..+|..++.-|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999853
No 411
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.86 E-value=0.88 Score=47.33 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=36.0
Q ss_pred CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.+......|+|.|+ |.-|..++.+|.+.|++|+.++++.
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34556667778999998 9999999999999999999999753
No 412
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=87.82 E-value=1.5 Score=48.53 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-~~VI~ 332 (523)
..|.++|.+.+...|++++++++|++|..+ ++++++|+.. +++ +++| +.||+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl 272 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL 272 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence 468899999999999999999999999876 6788888653 233 4788 88885
No 413
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=87.73 E-value=2.5 Score=44.47 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=44.1
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEC
Q 009881 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVLD 333 (523)
Q Consensus 270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~A~~VI~~ 333 (523)
++++|..|. ..+.++|.+.+...|++++.+++|++|..+ ++.+ .|.+.++ .+++||+||+.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVVC 253 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEEC
Confidence 355676654 356788899999999999999999999765 4443 3433332 37999998853
No 414
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.68 E-value=0.8 Score=43.36 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n 54 (523)
...|.|||+|--|+.+|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 69999875
No 415
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.50 E-value=0.57 Score=50.84 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.|.|||+|.-|.-.|..|+++|++|.++|+++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 589999999999999999999999999998753
No 416
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.46 E-value=0.59 Score=50.70 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999999864
No 417
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=87.44 E-value=1.7 Score=45.36 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=25.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEe
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHL 51 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~Vlvl 51 (523)
||||||||++|+.||+++||.|.+|+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999999999
No 418
>PRK07121 hypothetical protein; Validated
Probab=87.43 E-value=1.5 Score=47.41 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=43.5
Q ss_pred cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009881 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (523)
Q Consensus 278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-~~VI~ 332 (523)
...+.+.|.+.++..|++|+++++|++|..++ +|++++|+.. +|+ .++| +.||+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 45789999999999999999999999998763 5788888763 333 4789 88885
No 419
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.37 E-value=0.7 Score=47.81 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=34.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCC
Q 009881 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (523)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~ 57 (523)
++..+|+|.||-|..-|..|++|...+ .+++.|||...+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 456799999999999999999999986 889999998764
No 420
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.32 E-value=0.83 Score=45.23 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~ 55 (523)
...|+|||.|-.|+.+|..|+++| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 357999999999999999999999 7899999653
No 421
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.29 E-value=0.75 Score=46.58 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~ 56 (523)
.|+|||+|..|.++|..|+..| .+|.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 58999999753
No 422
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.27 E-value=0.74 Score=50.00 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999974
No 423
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.14 E-value=0.6 Score=40.77 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.......|.|||+|=.|-.+|.+|.++|+.|.-+..++
T Consensus 6 ~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred cCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34567899999999999999999999999998877654
No 424
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=87.10 E-value=0.71 Score=49.51 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~ 56 (523)
-.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 589999999999999999999998 8999998764
No 425
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=86.98 E-value=2.5 Score=46.70 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.5
Q ss_pred eecCCcC-hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 273 ~p~gG~~-eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
++..++| .|.++|.+.+...|.+++.++.|.+++++ +|+++||.. .+|+ .|+|+.||+
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 4444444 79999999888899999999999999886 789999864 3565 478999995
No 426
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.96 E-value=0.74 Score=49.45 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|+|.|.+|..+|..|.+.|++|.+.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999875
No 427
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.77 E-value=0.7 Score=50.01 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
-.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 428
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.71 E-value=1.1 Score=39.54 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n 54 (523)
...|+|||+|=+|-.++.+|++.|.+ |.++-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46799999999999999999999977 9999876
No 429
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.67 E-value=1 Score=48.17 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
..++|+|.|-+|+.+|..|++.|++|.+.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987653
No 430
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.59 E-value=1.4 Score=46.23 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=36.1
Q ss_pred CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
++.+.+.....|+|+|+ |..|..++..|.++|++|..+.++.
T Consensus 52 ~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 52 SFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 45666677778999996 9999999999999999999998864
No 431
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.39 E-value=0.78 Score=45.98 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
|-|||.|.-|...|..|++.|++|.+++++.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 7899999999999999999999999999874
No 432
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=86.36 E-value=2.1 Score=46.36 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=44.7
Q ss_pred ccEEeecCCc---ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 009881 269 GALIYPIYGQ---GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD 333 (523)
Q Consensus 269 ~~~~~p~gG~---~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~A~~VI~~ 333 (523)
++.+.|.+|. +.|.++|++.+.. .|++++++++|..|..++ ++. +.|+ +.+|+ +++||+||+.
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence 3455677763 5899999998864 589999999999997642 333 3444 33453 6899999853
No 433
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.36 E-value=0.78 Score=46.30 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (523)
Q Consensus 25 VIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~ 55 (523)
|.|||+|..|..+|..|+..|. +|.++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999984
No 434
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.36 E-value=0.67 Score=52.63 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..|.|||+|.-|.-.|..++++|++|.++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4589999999999999999999999999998853
No 435
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.33 E-value=0.83 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
-.|.|||+|.-|.-.|..|+++|+.|.++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3589999999999999999999999999998864
No 436
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.18 E-value=0.87 Score=49.28 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCCC
Q 009881 23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La---~~G~~VlvlE~n~~~GG 59 (523)
-.|+|||+|..|+-.|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999996554 45999999999998753
No 437
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.17 E-value=0.98 Score=48.19 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|+|+|+|-.|.++|..|++.|.+|.+.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 458999999999999999999999999999765
No 438
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=86.09 E-value=2.2 Score=47.26 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A-~~VI~ 332 (523)
..|.++|.+.++..|++++++++|.++..+ ++++++|...+ |+ +|+| +.||+
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence 378899999999999999999999999876 78888987643 33 4776 56774
No 439
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.04 E-value=0.95 Score=48.05 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCeEEEeccCCCCCC
Q 009881 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGS 59 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~--------------~G~~VlvlE~n~~~GG 59 (523)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+++.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999999875 5899999999987754
No 440
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.95 E-value=1 Score=48.16 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+|+.++--|+|||-|-+|.++|..|.+.|++|.+.|.++
T Consensus 1 ~~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 1 SLMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 355566679999999999999999999999999999876
No 441
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.86 E-value=1 Score=45.53 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~ 56 (523)
..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999654
No 442
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.56 E-value=0.92 Score=48.88 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.56 E-value=0.88 Score=51.64 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|||+|.-|.-.|..++++|++|.++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999875
No 444
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.53 E-value=0.92 Score=45.69 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999874
No 445
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=85.42 E-value=0.49 Score=46.88 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGK 46 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~ 46 (523)
...+++|||+|..||++|..+.+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~ 27 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYH 27 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhh
Confidence 34689999999999999999988663
No 446
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=85.38 E-value=3 Score=44.20 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
++||||||+|++|+++|+.|+++|++|+++|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999874
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.06 E-value=1 Score=48.75 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 59999999999999999999999999999763
No 448
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=84.97 E-value=3.1 Score=44.17 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~ 332 (523)
.++-+.|.+.++..|++++.+++|+++..+ ++++++|+ ++|++++|+.||.
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~ 158 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL 158 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence 356667778888899999999999999876 56666665 5788899999984
No 449
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=84.96 E-value=2.9 Score=45.54 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe--CCCc--EEEcCEEEE
Q 009881 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL 332 (523)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l--~~G~--~i~A~~VI~ 332 (523)
.+.++|.+.++..|.+++++++|++|..+ +|++++|+. .+|+ +++|+.||+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~~VVl 245 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSKAVVV 245 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecCeEEE
Confidence 68899999999999999999999999765 678878765 3333 589999985
No 450
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.93 E-value=1.6 Score=38.99 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~ 55 (523)
...++|||+|..|...|..|++.| ++|.+++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 457999999999999999999996 8999999874
No 451
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.83 E-value=2 Score=34.50 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEecc
Q 009881 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~ 53 (523)
...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 789999988
No 452
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=84.55 E-value=0.92 Score=47.62 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEeccCCCC
Q 009881 18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFY 57 (523)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~La~~-----G~~VlvlE~n~~~ 57 (523)
++...+||||||+|.+|+.+|+.|+.. .++++++|....+
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 455679999999999999999999863 7899999986443
No 453
>PLN02256 arogenate dehydrogenase
Probab=84.55 E-value=1.4 Score=44.69 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
....|.|||.|.-|...|..|++.|++|.++++++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 34689999999999999999999999999999875
No 454
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.53 E-value=1 Score=48.75 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.-.|+|+|+|..|+.|+..+...|-+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999875
No 455
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.49 E-value=1 Score=51.57 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~ 56 (523)
-.|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998765
No 456
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.44 E-value=1.8 Score=42.28 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.3
Q ss_pred cccEEEECC-C-hhHHHHHHHHhhCCCeEEEeccCC
Q 009881 22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGa-G-l~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..-++|.|+ | --|..+|..|++.|.+|++.+++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356899997 5 478999999999999999988764
No 457
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.29 E-value=1.1 Score=47.53 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
...|.|+|-|.+|+++|..|.+.|.+|.+.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 457999999999999999999999999999987765
No 458
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=84.27 E-value=1.1 Score=45.19 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
..|.|||+|.-|.-.|..++.+|++|.++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999998
No 459
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.26 E-value=0.88 Score=45.38 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=36.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~ 65 (523)
.-|+|||.|+-|.+.|..|+++|+.|.++++....+....+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~ 46 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE 46 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh
Confidence 4689999999999999999999999999999887765555543
No 460
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.25 E-value=1.2 Score=44.65 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.|.|||.|.-|...|..|++.|++|+++|++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999874
No 461
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.79 E-value=1.1 Score=45.51 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.+.|+|+|--|+..|++|+++|..|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 578999999999999999999988888877664
No 462
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.76 E-value=1 Score=51.23 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
..|.|||+|.-|.-.|..++++|++|.++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4599999999999999999999999999998763
No 463
>PRK06175 L-aspartate oxidase; Provisional
Probab=83.52 E-value=4.2 Score=43.33 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
.++||||||+|.+||.||+.++ .|.+|++|||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999999988775
No 464
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.45 E-value=1.5 Score=43.92 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~ 55 (523)
..|+|||+|-+|.++|..|++.|. +|.+++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999996 799999874
No 465
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.44 E-value=1.4 Score=46.50 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
.-.|+|+|+|.-|+.+|..|...|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3479999999999999999999999999999875
No 466
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.43 E-value=1.3 Score=46.95 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
-.|.|||-|..|.++|..|.+.|++|...|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3699999999999999999999999999997653
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.43 E-value=2 Score=40.24 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.1
Q ss_pred CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009881 21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 21 ~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n 54 (523)
....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999995 999999999999999999999876
No 468
>PLN02572 UDP-sulfoquinovose synthase
Probab=83.23 E-value=2.2 Score=45.62 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=28.8
Q ss_pred ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009881 23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n 54 (523)
..|+|.|| |+-|..++.+|++.|++|.++|+.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 45999996 999999999999999999999853
No 469
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.20 E-value=1.5 Score=44.16 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999999999999984
No 470
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=83.18 E-value=1.2 Score=50.59 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La-~~G~~VlvlE~n~ 55 (523)
..|.|||+|..|.-.|..++ ++|++|.++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 46899999999999999998 6999999999985
No 471
>PLN02712 arogenate dehydrogenase
Probab=83.09 E-value=1.9 Score=48.43 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
....|.|||.|.-|-..|..|.+.|++|.++++++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34579999999999999999999999999999874
No 472
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=83.08 E-value=3.9 Score=42.66 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
...+||+|||||++|+++|+.|+++|.+|+++|+++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999998753
No 473
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=83.07 E-value=3.6 Score=43.77 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=36.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009881 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~ 61 (523)
||||||+|++|+.||+.++++| .+|+||||++..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999998864
No 474
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=83.02 E-value=3.9 Score=40.28 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-----------~G~~i~A~~VI~ 332 (523)
.++.+.|.+.+...|+++++++.|..+..++ ++++.+|.+. +..+++|+.||.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 5788889999999999999999999998762 4477777643 124689999883
No 475
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=83.02 E-value=1.8 Score=42.35 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
....++|+|+|.-+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999998765
No 476
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.81 E-value=1.6 Score=44.15 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~ 55 (523)
..|.|||+|..|...|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999995 899999874
No 477
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.79 E-value=1.7 Score=44.68 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n 54 (523)
...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4679999999999999999999998 89999984
No 478
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=82.79 E-value=3.3 Score=46.00 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 009881 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (523)
Q Consensus 278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A~~-VI~ 332 (523)
...+...|.+.++..|.+|+++++|++|+.++ +|+++||... +|+ +|+|++ ||+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil 269 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL 269 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence 35677778788888999999999999999863 6889898653 343 478874 774
No 479
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=82.73 E-value=2 Score=43.64 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~ 55 (523)
....|.|||+|-.|.++|..|+..|. .+.++|.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 44689999999999999999999998 799999864
No 480
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.58 E-value=1.7 Score=44.29 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~ 57 (523)
..|.|||+|..|..+|..|+..|. +|.++|.++..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 579999999999999999999996 89999998754
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.43 E-value=1.4 Score=47.11 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
+|+|+|+|--|..+|..|.+.|++|.++|++..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 689999999999999999999999999999754
No 482
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.36 E-value=4.7 Score=44.60 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=46.9
Q ss_pred EeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (523)
Q Consensus 272 ~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~ 332 (523)
+++..+. ..|.++|.+.+...|.+++.++.+.+++.++ +|+++||.. .+|+ .|+|+.||+
T Consensus 118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL 183 (570)
T PRK05675 118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSKATVL 183 (570)
T ss_pred EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence 3444444 4888999988888999999999999998752 688999864 3565 478999995
No 483
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=82.25 E-value=1.6 Score=43.90 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
+|-|||.|.-|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999875
No 484
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=82.16 E-value=5.6 Score=43.95 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~ 61 (523)
||||||+|++|+.||+.++++|.+|+++||....||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999998877744
No 485
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=82.14 E-value=1.4 Score=47.32 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~ 56 (523)
.+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4789999999999999999999999999998754
No 486
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.93 E-value=1.5 Score=47.51 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
..|.|+|-|.+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999865
No 487
>PRK06847 hypothetical protein; Provisional
Probab=81.90 E-value=5.1 Score=41.39 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~ 57 (523)
...||+|||||++||++|+.|++.|.+|+|+|+++..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4579999999999999999999999999999998753
No 488
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=81.85 E-value=5.2 Score=44.81 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~ 60 (523)
...|||||||||+.|+.+|+.|++.|++|++||+++.-+|-
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 34599999999999999999999999999999999876663
No 489
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.82 E-value=1.5 Score=49.76 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009881 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP 55 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La-~~G~~VlvlE~n~ 55 (523)
..|.|||+|..|.-.|..++ ++|++|.++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999998 8899999999865
No 490
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=81.74 E-value=1.8 Score=37.94 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n 54 (523)
..|+|||+|-.|+.+|..|++.|. +++++|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 469999999999999999999997 68888863
No 491
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.58 E-value=2 Score=39.58 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009881 24 DLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (523)
Q Consensus 24 DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n 54 (523)
.|+|||+|-.|+.+|..|++.|.. +.++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 389999999999999999999984 9999974
No 492
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=81.58 E-value=4.1 Score=44.89 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=42.7
Q ss_pred cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 009881 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (523)
Q Consensus 278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A~-~VI~ 332 (523)
...|.+.|.+.++..|+++++++.|++|+.+ +|+++||+.. +|+ +|+|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3578889999999999999999999999887 7889998763 454 47785 4774
No 493
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.52 E-value=1.4 Score=47.28 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~ 55 (523)
...|+|||+|.+|+=+|..|++.+++|+++.++.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3579999999999999999999999999999865
No 494
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.43 E-value=1.9 Score=42.72 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (523)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n 54 (523)
..++|+|+|-.|..+|..|++.|.+|.+++++
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999876
No 495
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.35 E-value=2.3 Score=43.20 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~ 55 (523)
.+..|.|||+|..|.++|..|+..|. ++.++|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 34589999999999999999999986 689999876
No 496
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=81.34 E-value=5.4 Score=39.28 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 009881 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL 332 (523)
Q Consensus 279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~A~~VI~ 332 (523)
.++-+.|.+.++..|.++++++.|+++..+ ++++ .|.+. ++.+++||.||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence 467788888888899999999999999876 4443 34333 456799999884
No 497
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=81.24 E-value=5 Score=41.51 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (523)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG 59 (523)
+.++||||||+|+.|+++|+.|++.|.+|+++|++...+|
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 4578999999999999999999999999999999887663
No 498
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.15 E-value=6.6 Score=43.51 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCC
Q 009881 21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH 60 (523)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~ 60 (523)
.++||||||+|++||.||+.++++| .+|+|+||....||.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 5689999999999999999999875 899999999877764
No 499
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.07 E-value=2 Score=44.14 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (523)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n 54 (523)
...|+|||+|--|+.+|..|+++|. +++++|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3579999999999999999999997 88889975
No 500
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.00 E-value=1.6 Score=46.95 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHH-HHHHHhhCCCeEEEeccCCC
Q 009881 23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF 56 (523)
Q Consensus 23 ~DVIIIGaGl~GL~-aA~~La~~G~~VlvlE~n~~ 56 (523)
..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 35899999999999 69999999999999998765
Done!