Query 009882
Match_columns 523
No_of_seqs 333 out of 2359
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 7E-111 1E-115 793.7 45.5 495 6-506 35-550 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 3.9E-92 8.4E-97 753.0 60.5 488 6-505 26-536 (657)
3 PTZ00009 heat shock 70 kDa pro 100.0 4.7E-89 1E-93 735.9 61.8 497 6-504 3-520 (653)
4 PRK13410 molecular chaperone D 100.0 3.2E-88 7E-93 726.2 60.7 486 7-505 2-511 (668)
5 PTZ00400 DnaK-type molecular c 100.0 8E-88 1.7E-92 725.6 59.4 487 6-505 40-550 (663)
6 KOG0101 Molecular chaperones H 100.0 2.1E-89 4.5E-94 698.7 42.3 502 1-504 1-522 (620)
7 PRK13411 molecular chaperone D 100.0 2.3E-87 5E-92 721.9 60.4 484 8-504 3-510 (653)
8 PLN03184 chloroplast Hsp70; Pr 100.0 5.1E-86 1.1E-90 711.8 61.2 486 6-504 38-547 (673)
9 TIGR01991 HscA Fe-S protein as 100.0 5.9E-86 1.3E-90 705.2 60.5 477 9-505 1-497 (599)
10 PRK00290 dnaK molecular chaper 100.0 1E-85 2.3E-90 710.1 61.9 483 7-504 2-508 (627)
11 PRK05183 hscA chaperone protei 100.0 4.4E-85 9.6E-90 699.8 59.0 477 6-505 18-513 (616)
12 CHL00094 dnaK heat shock prote 100.0 2E-84 4.4E-89 697.8 60.9 484 8-504 3-510 (621)
13 TIGR02350 prok_dnaK chaperone 100.0 1.8E-84 4E-89 698.5 60.0 482 8-504 1-506 (595)
14 KOG0102 Molecular chaperones m 100.0 1.1E-86 2.3E-91 651.4 35.5 488 5-505 25-536 (640)
15 PRK01433 hscA chaperone protei 100.0 2.5E-81 5.4E-86 664.7 57.0 454 7-505 19-491 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 2.8E-81 6.1E-86 680.3 58.1 481 9-495 1-499 (602)
17 COG0443 DnaK Molecular chapero 100.0 1.1E-79 2.3E-84 648.4 48.0 467 6-504 4-491 (579)
18 KOG0103 Molecular chaperones H 100.0 7.8E-70 1.7E-74 548.4 39.2 471 9-486 3-498 (727)
19 KOG0104 Molecular chaperones G 100.0 7.9E-65 1.7E-69 512.9 36.1 467 6-484 21-532 (902)
20 PRK11678 putative chaperone; P 100.0 1.1E-53 2.3E-58 438.6 37.6 321 9-370 2-447 (450)
21 PRK13928 rod shape-determining 100.0 3.2E-40 6.9E-45 331.6 33.1 301 10-371 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.2E-39 2.6E-44 326.4 31.9 299 9-368 6-324 (335)
23 TIGR00904 mreB cell shape dete 100.0 3.2E-37 6.9E-42 309.6 32.7 300 10-370 5-327 (333)
24 PRK13927 rod shape-determining 100.0 1.8E-37 3.9E-42 312.1 30.8 301 8-370 6-324 (334)
25 PRK13930 rod shape-determining 100.0 2.8E-36 6E-41 303.8 31.8 302 9-371 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1E-33 2.2E-38 276.7 23.8 299 9-368 3-319 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 1.1E-31 2.5E-36 254.7 21.6 203 103-366 36-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 2.2E-30 4.8E-35 242.9 25.6 305 7-372 6-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 9.9E-29 2.1E-33 238.8 27.7 202 106-368 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 6.9E-23 1.5E-27 208.8 24.5 194 142-367 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 1.9E-22 4E-27 208.0 27.2 196 144-370 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 6.4E-19 1.4E-23 176.9 23.6 206 132-371 159-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 1.1E-17 2.4E-22 170.8 18.8 295 10-370 2-347 (371)
34 COG4820 EutJ Ethanolamine util 99.7 7.3E-18 1.6E-22 147.0 8.8 197 110-367 75-271 (277)
35 smart00268 ACTIN Actin. ACTIN 99.7 7E-17 1.5E-21 165.2 16.4 291 8-370 2-347 (373)
36 PRK13917 plasmid segregation p 99.7 1.7E-14 3.7E-19 144.6 24.3 208 131-373 115-339 (344)
37 TIGR03739 PRTRC_D PRTRC system 99.6 9.2E-15 2E-19 145.7 19.0 209 127-368 101-318 (320)
38 PTZ00280 Actin-related protein 99.6 2.1E-14 4.6E-19 148.4 22.4 225 107-345 82-336 (414)
39 PF00022 Actin: Actin; InterP 99.6 1E-13 2.2E-18 143.0 19.2 305 5-370 2-367 (393)
40 PTZ00004 actin-2; Provisional 99.5 8.2E-13 1.8E-17 134.9 21.4 233 107-369 81-351 (378)
41 PTZ00452 actin; Provisional 99.5 2.5E-12 5.3E-17 130.8 23.3 236 107-370 80-349 (375)
42 PTZ00281 actin; Provisional 99.5 1.6E-12 3.4E-17 132.6 19.2 234 107-370 81-350 (376)
43 PTZ00466 actin-like protein; P 99.5 7.2E-12 1.6E-16 127.6 20.9 236 107-369 87-353 (380)
44 PF06406 StbA: StbA protein; 99.3 7.5E-12 1.6E-16 124.5 12.4 174 157-365 141-316 (318)
45 TIGR01175 pilM type IV pilus a 99.2 4.7E-10 1E-14 113.7 16.7 162 140-346 141-307 (348)
46 KOG0679 Actin-related protein 99.1 8.5E-09 1.8E-13 99.5 19.9 116 107-235 86-202 (426)
47 PF11104 PilM_2: Type IV pilus 99.1 7.9E-10 1.7E-14 111.4 13.7 181 142-368 136-339 (340)
48 COG5277 Actin and related prot 99.0 1E-08 2.3E-13 105.1 18.3 97 129-235 107-204 (444)
49 COG4972 PilM Tfp pilus assembl 99.0 1.3E-07 2.8E-12 90.3 21.4 157 144-345 151-311 (354)
50 PF07520 SrfB: Virulence facto 98.9 6.7E-07 1.4E-11 97.6 27.2 327 38-371 331-835 (1002)
51 PRK10719 eutA reactivating fac 98.8 5.5E-09 1.2E-13 105.3 6.6 84 129-227 89-184 (475)
52 TIGR02259 benz_CoA_red_A benzo 98.8 2.1E-07 4.6E-12 91.7 16.5 180 160-368 249-432 (432)
53 TIGR00241 CoA_E_activ CoA-subs 98.8 2.1E-07 4.7E-12 89.4 15.8 169 160-366 73-247 (248)
54 TIGR03192 benz_CoA_bzdQ benzoy 98.7 3.7E-06 8E-11 80.9 22.8 182 160-371 106-289 (293)
55 TIGR03286 methan_mark_15 putat 98.7 1.6E-06 3.4E-11 86.7 20.5 181 160-369 220-402 (404)
56 COG1924 Activator of 2-hydroxy 98.7 4.6E-06 9.9E-11 81.4 21.3 177 158-371 209-391 (396)
57 PRK13317 pantothenate kinase; 98.6 5.5E-06 1.2E-10 80.2 19.4 49 321-369 222-273 (277)
58 PF08841 DDR: Diol dehydratase 98.5 7.4E-07 1.6E-11 83.0 10.3 191 150-367 104-328 (332)
59 KOG0676 Actin and related prot 98.4 7.1E-06 1.5E-10 81.5 15.5 191 129-345 100-314 (372)
60 KOG0677 Actin-related protein 98.4 1.6E-05 3.6E-10 73.1 15.0 221 129-373 102-364 (389)
61 TIGR02261 benz_CoA_red_D benzo 98.2 7.7E-05 1.7E-09 70.9 16.5 179 161-368 80-262 (262)
62 KOG0797 Actin-related protein 98.0 8.6E-05 1.9E-09 74.7 12.1 122 100-233 194-321 (618)
63 PF06277 EutA: Ethanolamine ut 98.0 4.4E-05 9.5E-10 77.5 10.1 89 130-224 87-178 (473)
64 COG4457 SrfB Uncharacterized p 97.7 0.0083 1.8E-07 62.6 21.7 82 286-372 745-848 (1014)
65 PF01869 BcrAD_BadFG: BadF/Bad 97.7 0.018 3.9E-07 56.1 23.3 72 294-368 196-271 (271)
66 PF14574 DUF4445: Domain of un 97.3 0.0045 9.8E-08 63.1 13.8 84 283-367 290-374 (412)
67 PF02782 FGGY_C: FGGY family o 97.2 0.00088 1.9E-08 61.9 6.8 75 294-370 121-196 (198)
68 PRK10854 exopolyphosphatase; P 96.7 0.048 1E-06 58.1 15.8 78 144-229 99-177 (513)
69 COG1069 AraB Ribulose kinase [ 96.6 0.035 7.6E-07 57.4 13.1 78 291-373 401-481 (544)
70 KOG0680 Actin-related protein 96.6 0.044 9.6E-07 52.7 12.6 100 129-233 94-198 (400)
71 PRK15027 xylulokinase; Provisi 96.6 0.0075 1.6E-07 64.0 8.4 52 321-373 386-437 (484)
72 TIGR01315 5C_CHO_kinase FGGY-f 96.5 0.0078 1.7E-07 64.7 8.5 83 289-373 411-493 (541)
73 TIGR00744 ROK_glcA_fam ROK fam 96.5 0.75 1.6E-05 45.8 22.0 93 105-201 33-140 (318)
74 TIGR00555 panK_eukar pantothen 96.5 0.042 9.1E-07 53.1 12.2 47 320-366 229-278 (279)
75 PLN02669 xylulokinase 96.4 0.011 2.3E-07 63.7 8.8 71 297-370 422-492 (556)
76 COG4819 EutA Ethanolamine util 96.2 0.041 8.9E-07 53.1 10.3 89 130-224 89-180 (473)
77 TIGR02628 fuculo_kin_coli L-fu 96.0 0.028 6.1E-07 59.3 9.3 51 321-373 393-443 (465)
78 COG0248 GppA Exopolyphosphatas 96.0 0.055 1.2E-06 56.7 10.9 94 107-203 52-148 (492)
79 PF01968 Hydantoinase_A: Hydan 96.0 0.013 2.8E-07 57.6 6.0 69 295-366 215-283 (290)
80 PRK00047 glpK glycerol kinase; 96.0 0.021 4.6E-07 60.8 8.1 51 321-373 403-453 (498)
81 TIGR01312 XylB D-xylulose kina 95.9 0.025 5.4E-07 60.0 8.5 51 321-373 390-440 (481)
82 PF14450 FtsA: Cell division p 95.9 0.012 2.6E-07 49.5 4.9 48 186-233 1-53 (120)
83 PRK04123 ribulokinase; Provisi 95.9 0.021 4.5E-07 61.7 7.9 51 321-373 438-489 (548)
84 PRK11031 guanosine pentaphosph 95.9 0.047 1E-06 57.9 10.1 80 143-229 93-172 (496)
85 PTZ00294 glycerol kinase-like 95.9 0.028 6E-07 60.0 8.4 51 321-373 406-456 (504)
86 TIGR01311 glycerol_kin glycero 95.9 0.023 5E-07 60.5 7.7 51 321-373 399-449 (493)
87 PRK10331 L-fuculokinase; Provi 95.8 0.026 5.7E-07 59.6 7.9 51 321-373 389-439 (470)
88 TIGR01234 L-ribulokinase L-rib 95.8 0.03 6.5E-07 60.2 8.4 51 321-373 435-486 (536)
89 KOG0681 Actin-related protein 95.7 0.13 2.9E-06 52.9 11.8 120 104-235 92-216 (645)
90 KOG2517 Ribulose kinase and re 95.7 0.042 9.1E-07 57.1 8.4 74 298-373 390-464 (516)
91 TIGR01314 gntK_FGGY gluconate 95.6 0.037 8E-07 59.1 8.2 51 321-373 401-451 (505)
92 PLN02295 glycerol kinase 95.5 0.067 1.4E-06 57.2 9.6 51 321-373 412-462 (512)
93 TIGR02627 rhamnulo_kin rhamnul 95.5 0.039 8.5E-07 58.1 7.6 50 321-373 387-436 (454)
94 PRK10939 autoinducer-2 (AI-2) 95.3 0.052 1.1E-06 58.2 8.0 51 321-373 409-459 (520)
95 PRK10640 rhaB rhamnulokinase; 95.2 0.09 1.9E-06 55.6 9.3 50 321-373 375-424 (471)
96 PF07318 DUF1464: Protein of u 94.7 0.64 1.4E-05 46.0 12.9 54 320-374 259-319 (343)
97 COG1070 XylB Sugar (pentulose 94.7 0.17 3.7E-06 54.0 9.8 80 288-370 370-449 (502)
98 KOG2531 Sugar (pentulose and h 94.5 0.15 3.2E-06 51.6 7.9 55 314-370 435-489 (545)
99 PF02541 Ppx-GppA: Ppx/GppA ph 94.3 0.072 1.6E-06 52.3 5.6 75 146-228 76-151 (285)
100 PRK09557 fructokinase; Reviewe 94.2 6.1 0.00013 38.9 23.1 48 321-368 244-299 (301)
101 KOG0681 Actin-related protein 94.2 0.052 1.1E-06 55.8 4.1 67 304-370 539-614 (645)
102 PRK09698 D-allose kinase; Prov 93.1 9.8 0.00021 37.5 24.0 49 321-369 236-295 (302)
103 PF03702 UPF0075: Uncharacteri 92.7 0.48 1E-05 47.8 8.2 76 294-372 260-339 (364)
104 TIGR03706 exo_poly_only exopol 92.6 0.46 1E-05 47.0 8.0 108 109-227 54-163 (300)
105 PTZ00288 glucokinase 1; Provis 92.6 8.1 0.00018 39.8 17.2 19 154-172 128-146 (405)
106 PRK03011 butyrate kinase; Prov 92.3 4.2 9.1E-05 41.2 14.5 47 321-367 295-344 (358)
107 PF02543 CmcH_NodU: Carbamoylt 91.7 17 0.00036 36.9 19.2 81 287-372 132-215 (360)
108 PLN02920 pantothenate kinase 1 91.2 5.5 0.00012 40.3 13.6 49 320-368 296-350 (398)
109 smart00842 FtsA Cell division 91.0 1.3 2.9E-05 40.3 8.6 30 142-171 157-186 (187)
110 PRK14878 UGMP family protein; 90.9 4.6 9.9E-05 40.4 13.0 25 321-345 241-265 (323)
111 KOG0678 Actin-related protein 90.9 6.2 0.00013 38.6 12.9 97 130-232 108-207 (415)
112 PLN02666 5-oxoprolinase 90.8 1.9 4.2E-05 50.6 11.5 76 288-366 454-530 (1275)
113 KOG2708 Predicted metalloprote 90.6 3.2 7E-05 38.3 10.3 63 300-367 238-301 (336)
114 COG0533 QRI7 Metal-dependent p 90.2 4.8 0.0001 39.9 12.0 53 288-345 229-285 (342)
115 PRK09604 UGMP family protein; 90.0 23 0.00049 35.6 20.3 52 321-372 254-310 (332)
116 PRK09585 anmK anhydro-N-acetyl 89.6 1.7 3.7E-05 43.9 8.7 72 296-371 264-339 (365)
117 PF14450 FtsA: Cell division p 88.8 0.22 4.8E-06 41.8 1.5 60 108-171 47-119 (120)
118 COG0554 GlpK Glycerol kinase [ 88.0 2 4.4E-05 44.2 7.9 73 296-373 376-452 (499)
119 COG2377 Predicted molecular ch 87.7 4.9 0.00011 40.1 10.1 55 318-372 287-345 (371)
120 COG1548 Predicted transcriptio 87.6 1.9 4.1E-05 40.6 6.7 73 113-203 76-149 (330)
121 PTZ00340 O-sialoglycoprotein e 87.2 35 0.00076 34.3 16.5 115 103-226 40-163 (345)
122 PRK13318 pantothenate kinase; 87.2 4.4 9.5E-05 39.0 9.6 16 9-24 2-17 (258)
123 PRK14101 bifunctional glucokin 86.2 59 0.0013 35.9 19.8 72 297-369 245-329 (638)
124 PRK09605 bifunctional UGMP fam 85.1 59 0.0013 35.0 21.8 52 321-372 245-301 (535)
125 PF08735 DUF1786: Putative pyr 85.0 9.1 0.0002 36.4 10.0 96 125-227 111-208 (254)
126 TIGR00329 gcp_kae1 metallohydr 84.8 19 0.0004 35.7 12.9 25 321-345 258-282 (305)
127 TIGR03281 methan_mark_12 putat 84.7 4.8 0.0001 39.1 8.1 49 322-373 263-314 (326)
128 COG5026 Hexokinase [Carbohydra 83.4 58 0.0013 33.5 21.8 84 144-227 184-296 (466)
129 TIGR00143 hypF [NiFe] hydrogen 82.2 3.1 6.7E-05 46.2 6.7 49 321-369 658-711 (711)
130 COG1521 Pantothenate kinase ty 82.0 49 0.0011 31.6 14.7 45 290-334 181-225 (251)
131 COG0145 HyuA N-methylhydantoin 81.9 1.6 3.5E-05 47.7 4.3 41 159-202 256-296 (674)
132 PRK00976 hypothetical protein; 80.6 11 0.00023 37.4 9.1 50 321-373 263-314 (326)
133 PF03630 Fumble: Fumble ; Int 79.2 13 0.00028 37.4 9.3 47 321-367 287-339 (341)
134 TIGR03723 bact_gcp putative gl 77.8 78 0.0017 31.4 20.1 45 321-365 259-308 (314)
135 cd06007 R3H_DEXH_helicase R3H 77.3 8.7 0.00019 27.6 5.5 38 119-158 7-44 (59)
136 TIGR03722 arch_KAE1 universal 73.8 1E+02 0.0022 30.8 18.4 42 322-363 243-289 (322)
137 PF13941 MutL: MutL protein 73.1 23 0.0005 37.0 9.5 28 319-346 383-411 (457)
138 PF00370 FGGY_N: FGGY family o 71.7 2.8 6E-05 39.9 2.4 17 8-24 1-17 (245)
139 PRK07058 acetate kinase; Provi 71.5 28 0.0006 35.5 9.4 47 296-346 297-344 (396)
140 TIGR03123 one_C_unchar_1 proba 70.2 3.2 6.9E-05 41.1 2.4 20 184-203 128-147 (318)
141 cd02640 R3H_NRF R3H domain of 69.6 19 0.00041 26.0 5.7 42 117-159 5-46 (60)
142 KOG1369 Hexokinase [Carbohydra 67.7 1.5E+02 0.0033 31.2 13.9 64 135-204 185-251 (474)
143 smart00732 YqgFc Likely ribonu 67.4 4.9 0.00011 32.0 2.6 16 9-24 3-18 (99)
144 COG2441 Predicted butyrate kin 67.1 20 0.00044 34.3 6.8 54 320-373 272-335 (374)
145 COG1070 XylB Sugar (pentulose 66.7 4.5 9.8E-05 43.2 2.9 19 6-24 3-21 (502)
146 PRK05082 N-acetylmannosamine k 65.3 29 0.00062 33.9 8.2 49 321-369 233-287 (291)
147 COG3426 Butyrate kinase [Energ 64.8 24 0.00052 33.9 6.9 48 319-366 294-344 (358)
148 PF00349 Hexokinase_1: Hexokin 63.7 99 0.0022 28.6 10.8 32 142-173 169-203 (206)
149 PRK10939 autoinducer-2 (AI-2) 63.2 5.5 0.00012 42.7 2.8 18 7-24 3-20 (520)
150 PRK00047 glpK glycerol kinase; 62.8 6 0.00013 42.2 3.0 18 7-24 5-22 (498)
151 PRK13310 N-acetyl-D-glucosamin 62.8 29 0.00063 34.1 7.7 48 321-368 245-300 (303)
152 PLN02362 hexokinase 62.7 1.5E+02 0.0032 31.6 13.1 34 141-174 205-240 (509)
153 PLN02914 hexokinase 62.5 1.3E+02 0.0028 31.9 12.5 56 141-202 205-262 (490)
154 COG1940 NagC Transcriptional r 62.3 1.6E+02 0.0036 28.9 23.5 38 154-194 106-143 (314)
155 PTZ00294 glycerol kinase-like 62.3 5.7 0.00012 42.4 2.7 17 8-24 3-19 (504)
156 PRK10331 L-fuculokinase; Provi 62.2 5.9 0.00013 41.9 2.8 18 7-24 2-19 (470)
157 PLN02596 hexokinase-like 61.9 2.1E+02 0.0045 30.4 13.9 57 141-203 205-263 (490)
158 PRK13310 N-acetyl-D-glucosamin 61.2 1.6E+02 0.0035 28.7 12.7 46 152-201 94-139 (303)
159 PLN02405 hexokinase 60.8 1.7E+02 0.0037 31.1 13.1 54 141-200 205-260 (497)
160 PLN02902 pantothenate kinase 60.0 1.5E+02 0.0032 33.6 12.8 49 320-369 345-400 (876)
161 TIGR00241 CoA_E_activ CoA-subs 58.8 7.3 0.00016 37.2 2.5 17 8-24 1-17 (248)
162 KOG1385 Nucleoside phosphatase 58.2 32 0.00069 35.0 6.8 20 183-202 212-231 (453)
163 PF14574 DUF4445: Domain of un 58.1 37 0.0008 35.1 7.5 48 293-340 55-102 (412)
164 cd02641 R3H_Smubp-2_like R3H d 58.1 47 0.001 23.9 6.0 42 117-159 5-46 (60)
165 PF03652 UPF0081: Uncharacteri 57.8 9 0.00019 32.8 2.6 17 8-24 2-18 (135)
166 COG2971 Predicted N-acetylgluc 56.8 2E+02 0.0044 28.2 22.6 66 299-372 227-293 (301)
167 PRK15027 xylulokinase; Provisi 56.7 8 0.00017 41.0 2.6 17 8-24 1-17 (484)
168 PF02685 Glucokinase: Glucokin 55.4 1.3E+02 0.0027 30.0 10.6 123 104-236 37-181 (316)
169 TIGR02628 fuculo_kin_coli L-fu 55.0 9.2 0.0002 40.4 2.7 17 8-24 2-18 (465)
170 PRK00109 Holliday junction res 55.0 13 0.00028 32.0 3.1 18 7-24 4-21 (138)
171 cd04036 C2_cPLA2 C2 domain pre 54.6 1E+02 0.0022 25.2 8.6 69 409-482 45-116 (119)
172 PRK04123 ribulokinase; Provisi 54.3 9.8 0.00021 41.1 2.9 18 7-24 3-20 (548)
173 cd02646 R3H_G-patch R3H domain 53.3 39 0.00084 24.1 4.9 41 115-158 3-43 (58)
174 TIGR02707 butyr_kinase butyrat 52.9 44 0.00096 33.8 7.1 45 321-365 293-340 (351)
175 COG2192 Predicted carbamoyl tr 52.2 3.3E+02 0.0071 29.2 16.9 82 287-373 255-338 (555)
176 TIGR01311 glycerol_kin glycero 52.1 11 0.00023 40.2 2.7 17 8-24 2-18 (493)
177 COG4012 Uncharacterized protei 51.9 1.1E+02 0.0024 29.2 8.8 69 159-234 207-275 (342)
178 TIGR01314 gntK_FGGY gluconate 51.8 11 0.00024 40.3 2.7 17 8-24 1-17 (505)
179 TIGR01234 L-ribulokinase L-rib 51.7 11 0.00024 40.5 2.8 17 8-24 2-18 (536)
180 PRK13331 pantothenate kinase; 51.7 16 0.00035 34.9 3.5 24 1-24 1-24 (251)
181 PLN02295 glycerol kinase 51.3 11 0.00025 40.2 2.8 17 8-24 1-17 (512)
182 PF00349 Hexokinase_1: Hexokin 51.0 1.1E+02 0.0023 28.4 8.8 29 182-210 61-90 (206)
183 COG5026 Hexokinase [Carbohydra 49.8 65 0.0014 33.1 7.5 30 182-211 73-103 (466)
184 COG0816 Predicted endonuclease 49.8 15 0.00033 31.6 2.7 18 7-24 2-19 (141)
185 TIGR01315 5C_CHO_kinase FGGY-f 49.1 13 0.00027 40.2 2.6 16 9-24 2-17 (541)
186 cd02639 R3H_RRM R3H domain of 48.8 36 0.00078 24.6 4.1 30 130-159 17-46 (60)
187 KOG0797 Actin-related protein 46.1 8.3 0.00018 40.0 0.7 51 322-372 527-591 (618)
188 PLN02669 xylulokinase 44.5 18 0.0004 39.0 3.0 19 6-24 7-25 (556)
189 TIGR02261 benz_CoA_red_D benzo 41.9 21 0.00045 34.3 2.6 17 8-24 2-18 (262)
190 PRK11199 tyrA bifunctional cho 41.6 2.4E+02 0.0053 28.7 10.5 96 222-343 13-120 (374)
191 COG0554 GlpK Glycerol kinase [ 41.2 1.1E+02 0.0023 32.1 7.6 32 6-45 4-35 (499)
192 PLN02377 3-ketoacyl-CoA syntha 40.9 85 0.0018 33.4 7.2 54 293-346 165-219 (502)
193 PF08392 FAE1_CUT1_RppA: FAE1/ 40.6 66 0.0014 31.4 5.8 45 302-346 85-130 (290)
194 PRK00180 acetate kinase A/prop 38.4 1E+02 0.0022 31.8 7.0 47 297-346 302-349 (402)
195 TIGR00250 RNAse_H_YqgF RNAse H 38.3 19 0.00042 30.6 1.6 15 10-24 1-15 (130)
196 PF00869 Flavi_glycoprot: Flav 36.6 99 0.0021 30.2 6.2 79 429-519 139-221 (293)
197 PRK13321 pantothenate kinase; 36.1 30 0.00064 33.2 2.7 16 9-24 2-17 (256)
198 TIGR01319 glmL_fam conserved h 35.7 27 0.00058 36.3 2.4 45 314-358 382-432 (463)
199 PRK00039 ruvC Holliday junctio 34.7 31 0.00067 30.7 2.4 17 8-24 3-19 (164)
200 KOG2517 Ribulose kinase and re 34.0 38 0.00082 35.8 3.2 19 6-24 5-23 (516)
201 KOG2872 Uroporphyrinogen decar 34.0 1.1E+02 0.0023 29.8 5.8 45 287-333 219-263 (359)
202 PF02075 RuvC: Crossover junct 33.7 35 0.00076 29.7 2.6 16 9-24 1-16 (149)
203 PF13941 MutL: MutL protein 32.8 1.1E+02 0.0023 32.2 6.2 47 186-232 2-49 (457)
204 KOG1369 Hexokinase [Carbohydra 31.7 3.4E+02 0.0073 28.6 9.6 27 181-207 83-109 (474)
205 PTZ00107 hexokinase; Provision 31.3 6.5E+02 0.014 26.6 22.5 41 136-176 189-231 (464)
206 PLN02854 3-ketoacyl-CoA syntha 30.3 1.2E+02 0.0025 32.5 6.1 54 293-346 181-235 (521)
207 TIGR02627 rhamnulo_kin rhamnul 29.6 25 0.00055 36.9 1.1 15 10-24 1-15 (454)
208 TIGR00016 ackA acetate kinase. 29.0 1.9E+02 0.004 29.8 7.1 45 299-346 308-353 (404)
209 KOG1794 N-Acetylglucosamine ki 28.9 1.7E+02 0.0037 28.6 6.3 50 324-373 266-319 (336)
210 PLN00130 succinate dehydrogena 28.9 13 0.00029 32.8 -0.9 18 7-24 57-74 (213)
211 PLN03170 chalcone synthase; Pr 28.5 3.9E+02 0.0085 27.5 9.6 48 299-346 105-153 (401)
212 PLN03172 chalcone synthase fam 28.1 1.6E+02 0.0036 30.2 6.8 49 298-346 100-149 (393)
213 PRK15080 ethanolamine utilizat 28.1 1.9E+02 0.0042 27.8 6.9 45 182-226 22-66 (267)
214 PLN03173 chalcone synthase; Pr 27.6 2.5E+02 0.0054 28.8 8.0 47 300-346 102-149 (391)
215 PRK07515 3-oxoacyl-(acyl carri 27.5 91 0.002 31.7 4.8 38 297-334 266-303 (372)
216 PRK13321 pantothenate kinase; 27.2 2.4E+02 0.0051 27.0 7.3 46 186-232 2-47 (256)
217 PRK00292 glk glucokinase; Prov 27.2 51 0.0011 32.7 2.8 44 152-195 88-139 (316)
218 COG1940 NagC Transcriptional r 26.7 2.7E+02 0.0058 27.3 7.9 55 183-237 5-59 (314)
219 smart00732 YqgFc Likely ribonu 25.9 1.5E+02 0.0033 23.0 5.0 22 185-206 2-23 (99)
220 COG4012 Uncharacterized protei 25.3 62 0.0013 30.9 2.7 49 185-234 2-73 (342)
221 PLN02192 3-ketoacyl-CoA syntha 25.0 1.5E+02 0.0033 31.6 5.9 54 293-346 169-223 (511)
222 PRK13320 pantothenate kinase; 24.8 63 0.0014 30.8 2.8 17 8-24 3-19 (244)
223 PLN02914 hexokinase 24.6 2.2E+02 0.0047 30.3 6.9 25 182-206 93-117 (490)
224 PRK13326 pantothenate kinase; 24.5 69 0.0015 30.9 3.0 20 5-24 4-23 (262)
225 TIGR01312 XylB D-xylulose kina 23.9 40 0.00088 35.6 1.5 15 10-24 1-15 (481)
226 COG3894 Uncharacterized metal- 22.7 2.4E+02 0.0052 29.8 6.5 45 185-229 165-210 (614)
227 cd02198 YjgH_like YjgH belongs 22.7 1.8E+02 0.004 23.5 4.9 49 298-346 32-82 (111)
228 cd00327 cond_enzymes Condensin 22.7 3.6E+02 0.0078 25.1 7.7 43 304-346 11-55 (254)
229 PF02801 Ketoacyl-synt_C: Beta 22.4 1.3E+02 0.0027 24.9 3.9 46 302-347 25-72 (119)
230 PF00815 Histidinol_dh: Histid 22.2 1.5E+02 0.0033 30.5 5.1 49 128-176 137-186 (412)
231 COG0068 HypF Hydrogenase matur 22.1 3.2E+02 0.0069 30.2 7.5 49 321-369 693-746 (750)
232 PRK12408 glucokinase; Provisio 22.0 2.8E+02 0.006 27.8 7.0 48 153-201 107-162 (336)
233 PRK13318 pantothenate kinase; 22.0 3.4E+02 0.0074 25.9 7.4 17 186-202 2-18 (258)
234 PTZ00107 hexokinase; Provision 22.0 2.8E+02 0.006 29.3 7.1 25 182-206 72-96 (464)
235 TIGR02707 butyr_kinase butyrat 21.8 1.7E+02 0.0037 29.6 5.3 29 186-214 2-30 (351)
236 PLN03168 chalcone synthase; Pr 21.8 3.2E+02 0.007 28.0 7.5 48 299-346 100-148 (389)
237 PF04312 DUF460: Protein of un 21.8 77 0.0017 27.1 2.4 19 5-24 30-48 (138)
238 PRK14878 UGMP family protein; 21.7 1.2E+02 0.0027 30.1 4.3 43 297-339 41-83 (323)
239 TIGR03722 arch_KAE1 universal 21.4 1.5E+02 0.0032 29.6 4.8 42 297-338 42-83 (322)
240 PF00480 ROK: ROK family; Int 21.3 2.6E+02 0.0057 24.6 6.1 88 104-201 31-134 (179)
241 TIGR00067 glut_race glutamate 21.0 2E+02 0.0043 27.5 5.4 41 321-365 172-212 (251)
242 TIGR00329 gcp_kae1 metallohydr 20.3 1.5E+02 0.0033 29.2 4.6 46 296-341 44-89 (305)
243 TIGR01198 pgl 6-phosphoglucono 20.2 2.2E+02 0.0047 26.8 5.5 45 294-343 6-50 (233)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-111 Score=793.66 Aligned_cols=495 Identities=68% Similarity=1.058 Sum_probs=480.2
Q ss_pred CCCEEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChh
Q 009882 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (523)
...+||||||||||||+++ .+||+|+|.+++|++|+.|+++...+|+|++++.||+||+.|+|+.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 4679999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred hhccccccCeEEEecCCCCceEEEEEc-CCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 009882 71 VQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD 149 (523)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 149 (523)
+|.+++.+||+++. .+++|.+.+... ++.+.++|+++++|+|..+++.|+.|+|.++.++|+||||||++.||+++++
T Consensus 115 vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999999987 678999999988 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 009882 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (523)
Q Consensus 150 A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 229 (523)
|..+|||+++++|+||+|||++|++++.. .+.++||||+||||||||++.++++.|+|+++.|+.++||.+||.+.+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~---gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKD---GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccC---CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999998874 677999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009882 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (523)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~ 309 (523)
+|+.+.|+++++.+++.+.+++.+|+++||+||+.||+..+..+.++++++|.|++-++||..||++..+++...+.+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeeccc
Q 009882 310 KCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTP 389 (523)
Q Consensus 310 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~ 389 (523)
++|+.+++++.+|+.|+||||++|+|.||+.|+++|.|++.....||++|||+|||.+|..++|. ....++++.|++|
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~p 428 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNP 428 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999965 5678999999999
Q ss_pred CccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEE
Q 009882 390 LSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCF 469 (523)
Q Consensus 390 ~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~ 469 (523)
+++||++.||.|..+||||+.||++++..|++..|||+.+.|.+|+|++.+..+|++||.|.+.|+||+|+|.++|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceEEEEEEEcCCCceeeEEcC-----CchhhHHHHHH
Q 009882 470 DIDANGILNVSAEDKTTAKRTRSQSP-----TTRVDCQRMKL 506 (523)
Q Consensus 470 ~~d~~g~l~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 506 (523)
++|.||+|+|++.|..+|+..+++++ +|+|+|+||..
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~ 550 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVN 550 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999999988887 49999999865
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.9e-92 Score=752.97 Aligned_cols=488 Identities=51% Similarity=0.846 Sum_probs=455.0
Q ss_pred CCCEEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChh
Q 009882 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (523)
...+||||||||||+||++ .+||+|+|.++++++|..|+.+...+|.++++++||+||+.++++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 3469999999999999998 6999999999999999999999999999999999999999999999
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009882 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (523)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (523)
++...+.+||++..+.++...+.. ..+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~A 182 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDA 182 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHH
Confidence 999999999999987776655432 33578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 009882 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (523)
Q Consensus 151 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 230 (523)
|+.|||+++++++||+|||++|+.... .+++++|||+||||||+|++++.++.++++++.|+..+||++||++|++
T Consensus 183 a~~AGl~v~rlInEPtAAAlayg~~~~----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 183 GTIAGLNVIRVVNEPTAAALAYGMDKT----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHHcCCCeEEEEcChHHHHHHHhccCC----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 999999999999999999999987654 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccC---C-eeeEEEEcHHHHHHHHHHHHHHHHH
Q 009882 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE---G-IDFYSTITRARFEELNMDLFRKCME 306 (523)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~~~~ 306 (523)
|+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. | .++...|||++|+++++++++++..
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~ 338 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIA 338 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHH
Confidence 99999999999888888999999999999999999999999888876543 2 4578899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeee
Q 009882 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (523)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~ 386 (523)
.++++|++++++..+|+.|+||||+||+|.|++.|++.|+ ..+....||++|||+|||++|+.+++. .+++.+.|
T Consensus 339 ~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~D 413 (657)
T PTZ00186 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLD 413 (657)
T ss_pred HHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEEEe
Confidence 9999999999999999999999999999999999999995 556678999999999999999999853 46788999
Q ss_pred cccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEE
Q 009882 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (523)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~ 466 (523)
++|++||+++.++.+.+|||||++||++++..|++..|||+.+.|.||||++..+.+|..||+|+|.++|+.++|.++|+
T Consensus 414 v~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~ 493 (657)
T PTZ00186 414 VTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIE 493 (657)
T ss_pred eccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 467 VCFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
|+|++|.||+|+|++.+..||++..+.+. ++.++++++.
T Consensus 494 Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~ 536 (657)
T PTZ00186 494 VTFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMI 536 (657)
T ss_pred EEEEEcCCCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHH
Confidence 99999999999999999999999887775 6888888773
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=4.7e-89 Score=735.95 Aligned_cols=497 Identities=79% Similarity=1.188 Sum_probs=465.3
Q ss_pred CCCEEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChh
Q 009882 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (523)
+..+||||||||||+||++ .+||+|+|.++++++|..|+.+..++|.++++++||+||+.++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 5679999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009882 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (523)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (523)
++...+.+||.+..+.++.+.+.+.+.++...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999999888999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 009882 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (523)
Q Consensus 151 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 230 (523)
|+.|||+++++++||+|||++|+..... ..+.++||||+||||||+|++++.++.++++++.++..+||++||.+|++
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 9999999999999999999999876432 24678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009882 231 HFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (523)
Q Consensus 231 ~l~~~~~~~~~-~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~ 309 (523)
|+.++|.+++. .++..+++.+.+|+.+||++|+.||.+..+.+.++.++++.++...|||++||+++.++++++.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999988763 67778899999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeeccc
Q 009882 310 KCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTP 389 (523)
Q Consensus 310 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~ 389 (523)
++|++++++..+|+.|+|+||+||+|+|++.|++.|++..+....||++|||+|||++|+.+++...++.+++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 99999999999999999999999999999999999977778888999999999999999999875456677899999999
Q ss_pred CccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEE
Q 009882 390 LSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCF 469 (523)
Q Consensus 390 ~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~ 469 (523)
++||++..++.+.+||++|++||+++++.|++..++|+.+.|.||||++....+|..||++.|.++++.++|.++|+++|
T Consensus 401 ~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f 480 (653)
T PTZ00009 401 LSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTF 480 (653)
T ss_pred cccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999998888999999999999999998888899999
Q ss_pred EecCCceEEEEEEEcCCCceeeEEcC-----CchhhHHHH
Q 009882 470 DIDANGILNVSAEDKTTAKRTRSQSP-----TTRVDCQRM 504 (523)
Q Consensus 470 ~~d~~g~l~v~~~~~~~~~~~~~~~~-----~~~~~~~~~ 504 (523)
++|.||+|+|++.+..+|++..+.+. ++.++++++
T Consensus 481 ~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~ 520 (653)
T PTZ00009 481 DIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRM 520 (653)
T ss_pred EECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHH
Confidence 99999999999999999988766543 566777654
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.2e-88 Score=726.23 Aligned_cols=486 Identities=52% Similarity=0.834 Sum_probs=447.5
Q ss_pred CCEEEEEccccceEEEEE---------------ecceEEEEc-CCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChh
Q 009882 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (523)
..+||||||||||+||++ .+||+|+|. ++++++|..|+.+...+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 358999999999999998 799999997 46899999999999999999999999999999866
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009882 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (523)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (523)
++...+.+||.+..++++...+.+ ...++.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~--~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKC--PRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEE--ecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 445567889999888777665554 344578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 009882 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (523)
Q Consensus 151 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 230 (523)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++..+||++||++|++
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~ 233 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVD 233 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCC----eeeEEEEcHHHHHHHHHHHHHHHHH
Q 009882 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMDLFRKCME 306 (523)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~ 306 (523)
|+.++|.++++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||++|+++|.++++++..
T Consensus 234 ~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~ 313 (668)
T PRK13410 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLR 313 (668)
T ss_pred HHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999998888888899999999999999999999999988888876543 4678899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeee
Q 009882 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (523)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~ 386 (523)
+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++....||++|||+|||++|+.+++ ..+++.+.|
T Consensus 314 ~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~D 388 (668)
T PRK13410 314 PVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLD 388 (668)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEEe
Confidence 999999999999999999999999999999999999999 466778899999999999999999986 356789999
Q ss_pred cccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEE
Q 009882 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (523)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~ 466 (523)
++|++||+++.++.+.+|||||++||++++..|.+..+||+.+.|.+|||++....+|..||++.|.++|+.++|.++|+
T Consensus 389 v~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~ 468 (668)
T PRK13410 389 VTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQ 468 (668)
T ss_pred eccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 467 VCFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
|+|++|.||+|+|++.+..+|++..+.+. ++.++++++.
T Consensus 469 v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~ 511 (668)
T PRK13410 469 VAFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMI 511 (668)
T ss_pred EEEEECCCcEEEEEEEEcCCCceeeeeecccccCCHHHHHHHH
Confidence 99999999999999999999998766654 5777777653
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=8e-88 Score=725.64 Aligned_cols=487 Identities=55% Similarity=0.879 Sum_probs=451.9
Q ss_pred CCCEEEEEccccceEEEEE---------------ecceEEEEcC-CceEecHhhHhhhhhCcCchhhhchhhcCCCCCCh
Q 009882 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDA 69 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 69 (523)
+..+||||||||||+||++ .+||+|+|.+ +++++|..|+.+..++|.++++++||+||+.++|+
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 4569999999999999988 7999999974 58999999999999999999999999999999999
Q ss_pred hhhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 009882 70 SVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD 149 (523)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 149 (523)
.++...+.+||++..++++...+.+ . +..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEA--Q--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 9999999999999988777666554 2 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 009882 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (523)
Q Consensus 150 A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 229 (523)
||+.||++++++++||+|||++|+.... .++++||||+||||||+|++++.++.++++++.|+..+||++||+.|+
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKN----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccC----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 9999999999999999999999987653 467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCC----eeeEEEEcHHHHHHHHHHHHHHHH
Q 009882 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMDLFRKCM 305 (523)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~ 305 (523)
+|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++++++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999998888888899999999999999999999999888888765543 578899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEee
Q 009882 306 EPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 385 (523)
Q Consensus 306 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~ 385 (523)
+.|+++|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++....||+++||+|||++|+.+++. .+++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 99999999999999999999999999999999999999994 567788999999999999999999852 5678899
Q ss_pred ecccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceE
Q 009882 386 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 465 (523)
Q Consensus 386 ~~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i 465 (523)
|++|++||++..++.+.+|||+|+++|+++++.|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.++|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 466 TVCFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 466 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
+|+|++|.||+|+|++.+..+|++..+.+. ++.++++++.
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~ 550 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMV 550 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeeccccccHHHHHHHH
Confidence 999999999999999999999998766654 6778888663
No 6
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-89 Score=698.73 Aligned_cols=502 Identities=77% Similarity=1.156 Sum_probs=484.2
Q ss_pred CCCCCCCCEEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCC
Q 009882 1 MAGKGEGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 65 (523)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 65 (523)
|+.+....++||||||||+|++++ .+||+|+|.++++++|..|..+...+|.++++++||++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 566667889999999999999998 79999999999999999999999999999999999999999
Q ss_pred CCChhhhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 009882 66 FSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQ 145 (523)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~ 145 (523)
++|+.++.+++.|||.+..+.++.+.+.+.++++.+.++|+++.+++|..+++.++.++|..+.++|+|||++|+..||+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHH
Q 009882 146 ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 225 (523)
Q Consensus 146 ~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id 225 (523)
++.+|+.+||++++++++||+|||++|++.+. .....+++|+|+||||||++++.+.++.+.+.++.++.++||.+||
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~--~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~ 238 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKK--VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFD 238 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhcccc--ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhh
Confidence 99999999999999999999999999997665 5567789999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHH
Q 009882 226 NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCM 305 (523)
Q Consensus 226 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~ 305 (523)
+.|.+|+..+|+++++.++..+++++++|+.+||.+|+.||....+++.++++++|.++...|+|.+|++++.+++.++.
T Consensus 239 ~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 239 NKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEee
Q 009882 306 EPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 385 (523)
Q Consensus 306 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~ 385 (523)
++++.+|+++++++.+|+.|+||||++++|.++..+++.|+++.+..+.|||++||+|||++|+.+++.......++++.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 99999999999999999999999999999999999999999888999999999999999999999998777777899999
Q ss_pred ecccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceE
Q 009882 386 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 465 (523)
Q Consensus 386 ~~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i 465 (523)
|+.|.++|+++.++.|.++|+||+.+|++++.+|++..|||+.+.|.+|||++....+|+.+|.|.|.|+|++|.|.+.|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCceEEEEEEEcCCCceeeEEcCC-----chhhHHHH
Q 009882 466 TVCFDIDANGILNVSAEDKTTAKRTRSQSPT-----TRVDCQRM 504 (523)
Q Consensus 466 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~-----~~~~~~~~ 504 (523)
+++|.+|.+|+|.|++.|.++||+.++.+.. +.++|+||
T Consensus 479 evtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm 522 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERM 522 (620)
T ss_pred eEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhh
Confidence 9999999999999999999999999888663 77888887
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.3e-87 Score=721.89 Aligned_cols=484 Identities=54% Similarity=0.855 Sum_probs=446.0
Q ss_pred CEEEEEccccceEEEEE---------------ecceEEEEcC-CceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhh
Q 009882 8 PAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (523)
.+||||||||||+||++ .+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 58999999999999997 6899999975 589999999999999999999999999999998864
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 009882 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAG 151 (523)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~ 151 (523)
...+.+||.++.+.++...+.+ . +..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i--~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQI--R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 3457889999887776655544 3 4679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 231 (523)
+.|||+++++++||+|||++|+.... ..+.++||||+||||||+|++++.++.++++++.|+..+||++||+.|++|
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~---~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQ---DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhccccc---CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHH
Confidence 99999999999999999999987643 246789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHHH
Q 009882 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCMEP 307 (523)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~~~~~ 307 (523)
+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|++++.++++++.++
T Consensus 234 l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~ 313 (653)
T PRK13411 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEP 313 (653)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999998888888889999999999999999999999999888876543 357889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeec
Q 009882 308 VEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV 387 (523)
Q Consensus 308 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~ 387 (523)
|+++|+++++...+|+.|+||||+||+|+|++.|++.|++..+..+.||++|||+|||++|+.+++. .+++.+.|+
T Consensus 314 i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv 389 (653)
T PRK13411 314 MQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDV 389 (653)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeec
Confidence 9999999999999999999999999999999999999977778888999999999999999999853 578899999
Q ss_pred ccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEE
Q 009882 388 TPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 467 (523)
Q Consensus 388 ~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v 467 (523)
+|++||+++.++.+.+||+||++||+++++.|.+..|+|+.+.|.+|||++..+.+|..||++.|.++|+.+.|.++|+|
T Consensus 390 ~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 469 (653)
T PRK13411 390 TPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEV 469 (653)
T ss_pred ccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHH
Q 009882 468 CFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRM 504 (523)
Q Consensus 468 ~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~ 504 (523)
+|++|.||+|+|++.+..+|++..+.+. ++.++++++
T Consensus 470 ~f~id~~Gil~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~ 510 (653)
T PRK13411 470 SFEIDVNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERM 510 (653)
T ss_pred EEEECCCCeEEEEEeeccCCceEeeEEeccccchHHHHHHH
Confidence 9999999999999999999998766554 577777755
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=5.1e-86 Score=711.82 Aligned_cols=486 Identities=54% Similarity=0.830 Sum_probs=446.7
Q ss_pred CCCEEEEEccccceEEEEE---------------ecceEEEEcC-CceEecHhhHhhhhhCcCchhhhchhhcCCCCCCh
Q 009882 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDA 69 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 69 (523)
+..+||||||||||+||++ .+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 4569999999999999987 7999999974 5799999999999999999999999999999876
Q ss_pred hhhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 009882 70 SVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD 149 (523)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 149 (523)
++...+.+||++..++++...+.+.. .+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPA--IGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 44566778999988777666555443 346799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 009882 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (523)
Q Consensus 150 A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 229 (523)
|++.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||+.|+
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHH
Q 009882 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCM 305 (523)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~~~ 305 (523)
+|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++|++++.++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999988888889999999999999999999999999888876542 2578889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEee
Q 009882 306 EPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 385 (523)
Q Consensus 306 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~ 385 (523)
.+|+++|+++++...+|+.|+|+||+||+|.|++.|++.| +..+....||++|||+|||++|+.+++ ..+++.+.
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~ 424 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLL 424 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEE
Confidence 9999999999999999999999999999999999999999 566778899999999999999999985 35678999
Q ss_pred ecccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceE
Q 009882 386 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 465 (523)
Q Consensus 386 ~~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i 465 (523)
|++|++||+++.++.+.+|||||++||+++++.|.+..|+|+.+.|.+|||++....+|..||++.|.++|+.++|.++|
T Consensus 425 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i 504 (673)
T PLN03184 425 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 504 (673)
T ss_pred ecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHH
Q 009882 466 TVCFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRM 504 (523)
Q Consensus 466 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~ 504 (523)
+++|++|.||+|+|++.+..+|++..+.+. ++.++++++
T Consensus 505 ~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~ 547 (673)
T PLN03184 505 EVKFDIDANGILSVSATDKGTGKKQDITITGASTLPKDEVERM 547 (673)
T ss_pred EEEEEeCCCCeEEEEEEecCCCeEEEEEecccccccHHHHHHH
Confidence 999999999999999999999998877654 677878765
No 9
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=5.9e-86 Score=705.22 Aligned_cols=477 Identities=43% Similarity=0.698 Sum_probs=435.7
Q ss_pred EEEEEccccceEEEEE---------------ecceEEEEcCC-ceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhh
Q 009882 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQ 72 (523)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 72 (523)
+||||||||||+||++ .+||+|+|.++ .+++|..|+.+...+|.++++++||++|+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999997 69999999855 899999999999999999999999999999877432
Q ss_pred ccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 009882 73 GDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGV 152 (523)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~ 152 (523)
.+.+||.+..++++...+.+. + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 567899988777766655442 2 3689999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 009882 153 IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 232 (523)
Q Consensus 153 ~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 232 (523)
.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||+.|++++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l 229 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI 229 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999987654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 009882 233 VQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCL 312 (523)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 312 (523)
.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. +|.++...|||++|+++++++++++.+.|+++|
T Consensus 230 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L 303 (599)
T TIGR01991 230 LKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRAL 303 (599)
T ss_pred HHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8664 4444568889999999999999999999988888864 688999999999999999999999999999999
Q ss_pred HHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeecccCcc
Q 009882 313 RDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSL 392 (523)
Q Consensus 313 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~~s~ 392 (523)
+++++...+|+.|+||||+|++|+|++.|++.|+ ..+....||++|||+|||++|+.+++. ....++.+.|++|++|
T Consensus 304 ~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~sl 380 (599)
T TIGR01991 304 RDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSL 380 (599)
T ss_pred HHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeee
Confidence 9999999999999999999999999999999995 556778899999999999999999853 3445789999999999
Q ss_pred ceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEEEec
Q 009882 393 GLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDID 472 (523)
Q Consensus 393 gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~~~d 472 (523)
|+++.++.+.+|||||++||++++..|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|
T Consensus 381 gi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 460 (599)
T TIGR01991 381 GIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVD 460 (599)
T ss_pred EEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 473 ANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 473 ~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
.||+|+|++.+..+|++..+.+. +++++++++.
T Consensus 461 ~~gil~V~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~ 497 (599)
T TIGR01991 461 ADGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERML 497 (599)
T ss_pred CCCeEEEEEEECCCCcEEEEecccccCCCHHHHHHHH
Confidence 99999999999999998877654 6778887663
No 10
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-85 Score=710.13 Aligned_cols=483 Identities=57% Similarity=0.909 Sum_probs=447.4
Q ss_pred CCEEEEEccccceEEEEE---------------ecceEEEEc-CCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChh
Q 009882 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (523)
+.+||||||||||++|++ .+||+|+|. ++++++|..|+.+..++|.++++++||+||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 358999999999999998 799999997 67899999999999999999999999999998 667
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009882 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (523)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (523)
++...+.+||++..++++...+.+ + +..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEI--D--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEE--C--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 788888999999987776655543 3 367999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 009882 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (523)
Q Consensus 151 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 230 (523)
|+.|||+++++++||+|||++|+.... .++++||||+||||||+|++++.++.++++++.++..+||.+||++|++
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 231 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIID 231 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHH
Confidence 999999999999999999999987653 4688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHH
Q 009882 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCME 306 (523)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~~~~ 306 (523)
|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++++++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 311 (627)
T PRK00290 232 YLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIE 311 (627)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999998887654 26788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeee
Q 009882 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (523)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~ 386 (523)
.|+++|+++++...+|+.|+|+||+||+|+|++.|++.| +.++....||++|||+|||++|+.+++ ..+++.+.|
T Consensus 312 ~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d 386 (627)
T PRK00290 312 PCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLD 386 (627)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeeee
Confidence 999999999999999999999999999999999999999 567788899999999999999999986 357789999
Q ss_pred cccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEE
Q 009882 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (523)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~ 466 (523)
++|++||+++.++.+.+|||+|+++|+++++.|.+..++|+.+.|.+|||++....+|..||++.|.++|+.++|.++|+
T Consensus 387 ~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 466 (627)
T PRK00290 387 VTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466 (627)
T ss_pred ccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHH
Q 009882 467 VCFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRM 504 (523)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~ 504 (523)
++|++|.||+|+|++.+..+|++..+.+. ++.++++++
T Consensus 467 v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~ 508 (627)
T PRK00290 467 VTFDIDANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERM 508 (627)
T ss_pred EEEEECCCceEEEEEEEccCCceeEEEeccccccCHHHHHHH
Confidence 99999999999999999999998776654 566777755
No 11
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.4e-85 Score=699.77 Aligned_cols=477 Identities=42% Similarity=0.674 Sum_probs=432.8
Q ss_pred CCCEEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChh
Q 009882 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (523)
...+||||||||||+||++ .+||+|+|.++++++|..|+.+...+|.++++++||++|+.+.+.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI- 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh-
Confidence 4479999999999999997 699999999888999999999999999999999999999998763
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009882 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (523)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (523)
+.....+||.+...+++.+.+.+. + ..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++|
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 171 (616)
T PRK05183 97 -QQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDA 171 (616)
T ss_pred -hhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 444567899988777776666542 2 37899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 009882 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (523)
Q Consensus 151 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 230 (523)
|+.||++++++++||+|||++|+.... .++++||||+||||||+|++++.++.++++++.|+..+||++||+.|++
T Consensus 172 a~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~ 247 (616)
T PRK05183 172 ARLAGLNVLRLLNEPTAAAIAYGLDSG----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLAD 247 (616)
T ss_pred HHHcCCCeEEEecchHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q 009882 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEK 310 (523)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 310 (523)
|+.++++ .+...+++.+.+|+.+||++|+.||.+..+.+.+... ...|||++|++++.++++++.+++++
T Consensus 248 ~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~ 317 (616)
T PRK05183 248 WILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRR 317 (616)
T ss_pred HHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 3344678899999999999999999999888887532 22499999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeecccC
Q 009882 311 CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 390 (523)
Q Consensus 311 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~~ 390 (523)
+|+++++...+|+.|+|+||+||+|+|++.|+++|+ ..+..+.||++|||+|||++|+.+++. ....++.+.|++|+
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~ 394 (616)
T PRK05183 318 ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPL 394 (616)
T ss_pred HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeeccc
Confidence 999999999999999999999999999999999995 456678899999999999999999853 33467899999999
Q ss_pred ccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEEE
Q 009882 391 SLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFD 470 (523)
Q Consensus 391 s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~~ 470 (523)
+||+++.++.+.+|||||++||+++++.|++..|+|+.+.+.+|||++..+.+|..||++.|.++|+.++|.++|+|+|+
T Consensus 395 slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 474 (616)
T PRK05183 395 SLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQ 474 (616)
T ss_pred cccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 471 IDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 471 ~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
+|.||+|+|++.+..+|++..+.+. ++.++++++.
T Consensus 475 ~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~ 513 (616)
T PRK05183 475 VDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARML 513 (616)
T ss_pred ECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHH
Confidence 9999999999999999999877663 6888888663
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=2e-84 Score=697.80 Aligned_cols=484 Identities=56% Similarity=0.862 Sum_probs=444.5
Q ss_pred CEEEEEccccceEEEEE---------------ecceEEEEcC-CceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhh
Q 009882 8 PAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (523)
.+||||||||||++|++ .+||+|+|.+ +++++|..|+.+...+|.++++++||++|+.+++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 68999999999999998 7999999975 5799999999999999999999999999999865 4
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 009882 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAG 151 (523)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~ 151 (523)
+...+.+||.+..++++...+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~--~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECP--ALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 555677899998877666555443 344679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 231 (523)
+.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++..+||++||+.|++|
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHH
Confidence 99999999999999999999987654 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHHH
Q 009882 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCMEP 307 (523)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~~~~~ 307 (523)
+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|+|++||+++.++++++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~ 314 (621)
T CHL00094 235 LIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIP 314 (621)
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999988888876543 257888999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeec
Q 009882 308 VEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV 387 (523)
Q Consensus 308 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~ 387 (523)
|+++|+++++...+|+.|+|+||+||+|.|++.|++.|+ .++....||++|||+|||++|+.+++ ..+++.+.|+
T Consensus 315 i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d~ 389 (621)
T CHL00094 315 VENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDV 389 (621)
T ss_pred HHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeeeee
Confidence 999999999999999999999999999999999999994 66788899999999999999999885 3567899999
Q ss_pred ccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEE
Q 009882 388 TPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 467 (523)
Q Consensus 388 ~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v 467 (523)
+|++||++..++.+.+|||||++||+++++.|.+..++|+.+.+.+|||++..+.+|..||++.|.++|+.++|.++|++
T Consensus 390 ~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v 469 (621)
T CHL00094 390 TPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469 (621)
T ss_pred eceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHH
Q 009882 468 CFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRM 504 (523)
Q Consensus 468 ~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~ 504 (523)
+|++|.+|+|+|++.+..+|++..+.+. ++.++++++
T Consensus 470 ~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~ 510 (621)
T CHL00094 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERM 510 (621)
T ss_pred EEEECCCCeEEEEEeeccCCceeeeeeccchhccHHHHHHH
Confidence 9999999999999999999988766654 677777765
No 13
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.8e-84 Score=698.50 Aligned_cols=482 Identities=57% Similarity=0.894 Sum_probs=442.0
Q ss_pred CEEEEEccccceEEEEE---------------ecceEEEEcCC-ceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhh
Q 009882 8 PAIGIDLGTTYSCVGVW---------------TTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (523)
.+||||||||||++|++ .+||+|+|.++ ++++|..|+.+...+|.++++++||+||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 37999999999999998 78999999855 89999999999999999999999999999883 36
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 009882 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAG 151 (523)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~ 151 (523)
+...+.+||. +..+++...+.+ + +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6677889999 445555555544 3 4679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 231 (523)
+.||++++++++||+|||++|+.... ..+.++||||+||||||+|++++.++.++++++.++..+||++||+.|++|
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~---~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS---KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc---CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHH
Confidence 99999999999999999999987652 256889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHHH
Q 009882 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCMEP 307 (523)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~~~~~ 307 (523)
+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++++++++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~ 310 (595)
T TIGR02350 231 LADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEP 310 (595)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999999999999999999999999888876543 357889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeec
Q 009882 308 VEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV 387 (523)
Q Consensus 308 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~ 387 (523)
|+++|++++++..+|+.|+|+||+||+|+|++.|++.|+ .++....||++|||+|||++|+.+++. .+++.+.|+
T Consensus 311 i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~ 385 (595)
T TIGR02350 311 VRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDV 385 (595)
T ss_pred HHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeec
Confidence 999999999999999999999999999999999999995 677888999999999999999999853 567899999
Q ss_pred ccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEE
Q 009882 388 TPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 467 (523)
Q Consensus 388 ~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v 467 (523)
+|++||++..++.+.+||++|+++|++++++|.+..|+|+.+.|.+|||++..+.+|..||++.|.++++.++|.++|++
T Consensus 386 ~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 465 (595)
T TIGR02350 386 TPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEV 465 (595)
T ss_pred ccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred EEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHH
Q 009882 468 CFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRM 504 (523)
Q Consensus 468 ~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~ 504 (523)
+|++|.||+|+|++.+..+|++..+.+. ++.++++++
T Consensus 466 ~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~ 506 (595)
T TIGR02350 466 TFDIDANGILHVSAKDKGTGKEQSITITASSGLSEEEIERM 506 (595)
T ss_pred EEEEcCCCeEEEEEEEccCCceEEEEeccccccCHHHHHHH
Confidence 9999999999999999999988766554 677777765
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-86 Score=651.44 Aligned_cols=488 Identities=58% Similarity=0.883 Sum_probs=463.8
Q ss_pred CCCCEEEEEccccceEEEEE---------------ecceEEEEc-CCceEecHhhHhhhhhCcCchhhhchhhcCCCCCC
Q 009882 5 GEGPAIGIDLGTTYSCVGVW---------------TTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 68 (523)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 68 (523)
....++|||+||||||+|+. .+||+|+|. ++++++|..|+.+...+|.|+++.-||+||+.|.|
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 34569999999999999998 789999995 55899999999999999999999999999999999
Q ss_pred hhhhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 009882 69 ASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATK 148 (523)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 148 (523)
+.++.+++..||+++..+++..+++. ++..++|.++.+++|.++++.|+++++..+.++|+||||||++.||++++
T Consensus 105 ~evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred HHHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 99999999999999998888877766 67889999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHH
Q 009882 149 DAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (523)
Q Consensus 149 ~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 228 (523)
+|.++||++++++++||+|||++|+++.. .+..++|+|+||||||+++..+.++.+++..+.++..+||++||..+
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~ 256 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKK----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNAL 256 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhccccc----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHH
Confidence 99999999999999999999999999876 36789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCC----eeeEEEEcHHHHHHHHHHHHHHH
Q 009882 229 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMDLFRKC 304 (523)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~~ 304 (523)
.+++...|++..+.++..+..++.+|+..+|++|++||......+.++....+ ..+++++||.+||+++.+++++.
T Consensus 257 ~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rt 336 (640)
T KOG0102|consen 257 VRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIART 336 (640)
T ss_pred HHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999998877654 57889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEe
Q 009882 305 MEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 384 (523)
Q Consensus 305 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~ 384 (523)
++.+.++|+.+++...+|+.|+|+||.+|+|.+++.+++.| +.......||+++||.|||+++..++|+ ++++.+
T Consensus 337 i~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlL 411 (640)
T KOG0102|consen 337 IEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLL 411 (640)
T ss_pred hhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceee
Confidence 99999999999999999999999999999999999999999 5667888999999999999999999974 899999
Q ss_pred eecccCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcce
Q 009882 385 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 464 (523)
Q Consensus 385 ~~~~~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~ 464 (523)
.|++|+++|+++.++.|..+++||+.||+.++..|.+..|+|+.++|.++||+++...+|..+|+|.+.|+||.|+|.++
T Consensus 412 LdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpq 491 (640)
T KOG0102|consen 412 LDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQ 491 (640)
T ss_pred eecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 465 ITVCFDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 465 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
|+|+|.+|+||+++|+|.|..+||++.+++. +|+.++++|.
T Consensus 492 ieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV 536 (640)
T KOG0102|consen 492 IEVTFDIDANGIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMV 536 (640)
T ss_pred eeEEEeecCCceeeeehhhcccCCccceEEeecCCCCHHHHHHHH
Confidence 9999999999999999999999998866654 6888888764
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.5e-81 Score=664.73 Aligned_cols=454 Identities=37% Similarity=0.577 Sum_probs=394.5
Q ss_pred CCEEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhh
Q 009882 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (523)
..+||||||||||+||++ .+||+|+|.++++++|..| +++++||++|+.+++...
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 459999999999999998 7999999998889999987 789999999999876321
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 009882 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAG 151 (523)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~ 151 (523)
.............. ....+.+.+ .+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||
T Consensus 89 ~~~~~~~~k~~~~~--~~~~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 89 TPALFSLVKDYLDV--NSSELKLNF--ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred chhhHhhhhheeec--CCCeeEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 11100000011111 112233333 34689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 231 (523)
+.||++++++++||+|||++|+.... ...++||||+||||||+|++++.++.++++++.|+..+||++||.+|++|
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKN----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccC----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHH
Confidence 99999999999999999999987653 35689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 009882 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKC 311 (523)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 311 (523)
+.+++.. ..+.. .++.||++|+.||.+..... ....|||++|+++++++++++..+++++
T Consensus 241 ~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 241 LCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred HHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987632 22222 23469999999998765321 1578999999999999999999999999
Q ss_pred HHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeecccCc
Q 009882 312 LRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLS 391 (523)
Q Consensus 312 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~~s 391 (523)
|++++ ..+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ..++.+.|++|++
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~s 373 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLS 373 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccc
Confidence 99998 568999999999999999999999999 4667778999999999999999998752 3568899999999
Q ss_pred cceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEEEe
Q 009882 392 LGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDI 471 (523)
Q Consensus 392 ~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~~~ 471 (523)
+|+++.++.+.+||+||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+|+.++|.++|+|+|++
T Consensus 374 lgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~i 453 (595)
T PRK01433 374 LGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAI 453 (595)
T ss_pred eEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cCCceEEEEEEEcCCCceeeEEcC----CchhhHHHHH
Q 009882 472 DANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRMK 505 (523)
Q Consensus 472 d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 505 (523)
|.||+|+|++.+..||++..+.+. .+.+|++++.
T Consensus 454 d~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~ 491 (595)
T PRK01433 454 DADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIML 491 (595)
T ss_pred CCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999877665 5888888763
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.8e-81 Score=680.28 Aligned_cols=481 Identities=51% Similarity=0.859 Sum_probs=443.4
Q ss_pred EEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhc
Q 009882 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQG 73 (523)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~ 73 (523)
|||||||||||+||++ .+||+|+|.++++++|..|.....++|.++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 7999999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 009882 74 DMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVI 153 (523)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~ 153 (523)
+.+.+||++..++++...+.+.+.+....++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 009882 154 AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 233 (523)
Q Consensus 154 aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 233 (523)
||++++++++||+|||++|++.... .++++||||+||||+|++++++.++.++++++.++..+||++||++|++++.
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc---cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccc
Confidence 9999999999999999999876653 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCC--CceeEEEEecccC-CeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q 009882 234 QEFKRKNKKDISGNPRALRRLRTACERAKRTLSS--TAQTTIEIDSLYE-GIDFYSTITRARFEELNMDLFRKCMEPVEK 310 (523)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~--~~~~~~~i~~~~~-~~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 310 (523)
+++.++++.+...+++.+.+|+.+||++|+.||. +....+.++.+.+ |.++.+.|||++|+++++++++++.+.|++
T Consensus 238 ~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 317 (602)
T PF00012_consen 238 EKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEK 317 (602)
T ss_dssp HHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence 9999998888888999999999999999999999 6677788887777 889999999999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeecccC
Q 009882 311 CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 390 (523)
Q Consensus 311 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~~ 390 (523)
+|++++.+..+|++|+|+||+|++|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++ .++.+++.+.|++|+
T Consensus 318 ~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~ 394 (602)
T PF00012_consen 318 ALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPF 394 (602)
T ss_dssp HHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESS
T ss_pred ccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--ccccccccccccccc
Confidence 999999999999999999999999999999999996 77888899999999999999999984 355678889999999
Q ss_pred ccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEEE
Q 009882 391 SLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFD 470 (523)
Q Consensus 391 s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~~ 470 (523)
+||++..++.+..++++|+++|.+.+..|.+..++|+.+.+.||+|++....+|..||++.|.++++.++|.++|+++|+
T Consensus 395 ~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ 474 (602)
T PF00012_consen 395 SIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFE 474 (602)
T ss_dssp EEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEe
Confidence 99999999999999999999999999999999999999999999999988889999999999999988899889999999
Q ss_pred ecCCceEEEEEEEcCCCceeeEEcC
Q 009882 471 IDANGILNVSAEDKTTAKRTRSQSP 495 (523)
Q Consensus 471 ~d~~g~l~v~~~~~~~~~~~~~~~~ 495 (523)
+|.+|+|+|++.+..++++..+...
T Consensus 475 ld~~Gil~V~~~~~~~~~~~~~~v~ 499 (602)
T PF00012_consen 475 LDENGILSVEAAEVETGKEEEVTVK 499 (602)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEE
T ss_pred eeeeeehhhhhcccccccccccccc
Confidence 9999999999999999987655544
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-79 Score=648.39 Aligned_cols=467 Identities=60% Similarity=0.888 Sum_probs=434.9
Q ss_pred CCCEEEEEccccceEEEEE----------------ecceEEEEcCC-ceEecHhhHhhhhhCcCchhhhchhhcCCCCCC
Q 009882 6 EGPAIGIDLGTTYSCVGVW----------------TTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 68 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~----------------~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 68 (523)
...+||||||||||+||++ .+||+|+|..+ ++++|..|+.+...+|.++++.+||++|+.-.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 4578999999999999998 78999999866 49999999999999999999999999998610
Q ss_pred hhhhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 009882 69 ASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATK 148 (523)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 148 (523)
...+.+.+.+ +.++|+++++++|.+|++.++.+++..+.++|||||+||++.||++++
T Consensus 83 --------------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 --------------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 0111122222 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHH
Q 009882 149 DAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (523)
Q Consensus 149 ~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 228 (523)
+|++.|||+++++++||+|||++|++... .+..++|||+||||||+|++++.++.++++++.|+..+||++||.+|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l 216 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNAL 216 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHH
Confidence 99999999999999999999999998876 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q 009882 229 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPV 308 (523)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i 308 (523)
.+|+.++|..+++.++..++..+.+|+.+||++|+.||...++.+.+++...+.++...|+|++||+++.+++.++...+
T Consensus 217 ~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~ 296 (579)
T COG0443 217 IDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPV 296 (579)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877777778889999999999999999999999
Q ss_pred HHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeecc
Q 009882 309 EKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVT 388 (523)
Q Consensus 309 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~ 388 (523)
.+++.+++++..+|+.|+|+||++|+|.|++.+++.|+ .++....||+++||.|||++|+.+++. .+++++.|++
T Consensus 297 ~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~ 371 (579)
T COG0443 297 EQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVI 371 (579)
T ss_pred HHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeee
Confidence 99999999999999999999999999999999999995 778899999999999999999999864 2378899999
Q ss_pred cCccceEeeCCEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEE
Q 009882 389 PLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVC 468 (523)
Q Consensus 389 ~~s~gi~~~~~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~ 468 (523)
|+++|++..++.+..++++|+.+|.++...|.+..|+|..+.+.+++|++....+|..+|.|.+.++|+.+.|.++|+++
T Consensus 372 plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~ 451 (579)
T COG0443 372 PLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVT 451 (579)
T ss_pred eeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCceEEEEEEEcCCCceeeEEcC----CchhhHHHH
Q 009882 469 FDIDANGILNVSAEDKTTAKRTRSQSP----TTRVDCQRM 504 (523)
Q Consensus 469 ~~~d~~g~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~ 504 (523)
|.+|.||+++|++.+..+|++..+++. .+++++++|
T Consensus 452 f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~ 491 (579)
T COG0443 452 FDIDANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERM 491 (579)
T ss_pred eccCCCcceEeeeecccCCceEEEEEecCCCCCHHHHHHH
Confidence 999999999999999999999988865 466777755
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-70 Score=548.45 Aligned_cols=471 Identities=37% Similarity=0.597 Sum_probs=437.9
Q ss_pred EEEEEccccceEEEEE---------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhc
Q 009882 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQG 73 (523)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~ 73 (523)
++|||||..++.+|++ .+|++|+|...+|++|..|..+...++.|++..+||++|+.|+||.+|.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 8999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 009882 74 DMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVI 153 (523)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~ 153 (523)
..+.+|+++...+|+...+.+.|.++.+.++++++++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||+.
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeechhHHHHHhcccccccC---CCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 009882 154 AGLNVMRIINEPTAAAIAYGLDKKAT---SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (523)
Q Consensus 154 aGl~~~~li~Ep~Aaa~~~~~~~~~~---~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 230 (523)
|||+.+++++|.+|+|++|+..+.+. ..++.+++++|+|.+++.+|++.+..|.+.++++.++..+||++||+.|.+
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 99999999999999999999887653 345678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q 009882 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEK 310 (523)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 310 (523)
|+.++|+.+++++...++++..||+.+||+.|+.||.+......|++++++.|.+..|+|++||+++.|+++++...+.+
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~ 322 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLK 322 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCCCccccceEeeecccC
Q 009882 311 CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 390 (523)
Q Consensus 311 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~~~~~~~~~~~~~~~~ 390 (523)
+|+++++...+|+.|.+|||+||+|.|.+.|+++| ++.+..++|.++|||+|||+++|+++ +.++++++.++|+.|+
T Consensus 323 ~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~Di~py 399 (727)
T KOG0103|consen 323 ALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceecceecccce
Confidence 99999999999999999999999999999999999 78899999999999999999999999 7789999999999999
Q ss_pred ccceEee----C-CEEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecC-ccccccCcceeEEEEeCCCCCCCC-cc
Q 009882 391 SLGLETA----G-GVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGE-RTRTRDNNLLGKFELSGIPPAPRG-VP 463 (523)
Q Consensus 391 s~gi~~~----~-~~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~-~~~~~~~~~ig~~~i~~~~~~~~~-~~ 463 (523)
+|.++.. + +....+||+|.++|.++..+|... ..+.+.++++. ...+.....|+++++.++.+...| ..
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk----~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~s 475 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRK----GPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFS 475 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEec----CceEEEEEeccccccCCCCCceeeEEecccccCcccccc
Confidence 9988754 2 556789999999999998888653 24778887776 444445678999999988765553 45
Q ss_pred eEEEEEEecCCceEEEEEEEcCC
Q 009882 464 QITVCFDIDANGILNVSAEDKTT 486 (523)
Q Consensus 464 ~i~v~~~~d~~g~l~v~~~~~~~ 486 (523)
++++.+.++..|+.++.-.-.-.
T Consensus 476 kVKvkvr~n~~Gi~~i~sA~~~e 498 (727)
T KOG0103|consen 476 KVKVKVRLNEHGIDTIESATLIE 498 (727)
T ss_pred ceeEEEEEcCccceeeecceeec
Confidence 79999999999999987554433
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-65 Score=512.93 Aligned_cols=467 Identities=33% Similarity=0.532 Sum_probs=411.8
Q ss_pred CCCEEEEEccccceEEEEE----------------ecceEEEEcCCceEecHhhHhhhhhCcCchhhhchhhcCCCCCCh
Q 009882 6 EGPAIGIDLGTTYSCVGVW----------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDA 69 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~----------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 69 (523)
...+++||+||.+++||+. ++|++|+|.+++|++|..|.....++|.+++..++.++|+...++
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 4568999999999999988 899999999999999999999999999999999999999999999
Q ss_pred hhhccccccCe-EEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 009882 70 SVQGDMKLWPF-KVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATK 148 (523)
Q Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 148 (523)
.++.+.+.+|+ .++.++ .+..+.+.+.+ ...|+++++++|+|.+.+..|+.+...++.++|||||.+|++.||+++.
T Consensus 101 ~v~ly~~~~p~~e~v~d~-~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDP-QRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHHhcCCceeecccC-ccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 98888888885 455544 56677777766 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHhccccccc-CCCCCeEEEEEEeCCcceEEEEEEEeC----------CeEEEEEecCCC
Q 009882 149 DAGVIAGLNVMRIINEPTAAAIAYGLDKKA-TSVGEKNVLIFDLGGGTFDVSLLTIEE----------GIFEVKATAGDT 217 (523)
Q Consensus 149 ~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~-~~~~~~~vlV~D~GggT~Dvsv~~~~~----------~~~~v~~~~~~~ 217 (523)
+|+++||+++++||+|-+|||+.|+..+.. .....++++|||||+|+|.++++.+.- ..+++++.+.+.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999988643 346778999999999999999998741 488999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHH
Q 009882 218 HLGGEDFDNRMVNHFVQEFKRKNKK--DISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEE 295 (523)
Q Consensus 218 ~lGG~~id~~l~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~ 295 (523)
.+||..|..+|.+++.+.|.+.++. ++..+|+++.+|.++|+++|..||.|..+.+.|+++.++.||...|||++||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 9999999999999999999998874 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhCCC
Q 009882 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEG 375 (523)
Q Consensus 296 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~~~ 375 (523)
+|.++..++..+|+++|+.++++.++|+.|+|.||++|+|.||+.|.+..+..++...+|.|+|+++||+++|+.|+ .
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--k 416 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--K 416 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--c
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999 6
Q ss_pred CccccceEeeecccCccceEeeCC--------EEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCccccccCcce
Q 009882 376 NEKVQDLLLLDVTPLSLGLETAGG--------VMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLL 447 (523)
Q Consensus 376 ~~~~~~~~~~~~~~~s~gi~~~~~--------~~~~ii~~~~~lP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~i 447 (523)
.++++++.+.|...++|-++..+. ....+|++|.++|..+..+|+.+.|+ +.+.+-.|.-. ..+
T Consensus 417 sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl 488 (902)
T KOG0104|consen 417 SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNL 488 (902)
T ss_pred cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCc
Confidence 789999999999999888776543 23468999999999988777765554 33332222110 224
Q ss_pred eEEEEeCCCCCC----C---CcceEEEEEEecCCceEEEEEEEc
Q 009882 448 GKFELSGIPPAP----R---GVPQITVCFDIDANGILNVSAEDK 484 (523)
Q Consensus 448 g~~~i~~~~~~~----~---~~~~i~v~~~~d~~g~l~v~~~~~ 484 (523)
..+++.|+...- . ...-|+++|.+|.+|++.|+..+.
T Consensus 489 ~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~ev 532 (902)
T KOG0104|consen 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEV 532 (902)
T ss_pred cEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeE
Confidence 477787765321 1 123489999999999999987644
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.1e-53 Score=438.58 Aligned_cols=321 Identities=26% Similarity=0.371 Sum_probs=270.7
Q ss_pred EEEEEccccceEEEEE---------------ecceEEEEc----------------------------------------
Q 009882 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFT---------------------------------------- 33 (523)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~---------------------------------------- 33 (523)
++|||||||||++|++ .+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999998 789999994
Q ss_pred -CCceEecHhhHhhhhhCcCch--hhhchhhcCCCCCChhhhccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHH
Q 009882 34 -DTERLIGDAAKNQVAMNPTNT--VFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISS 110 (523)
Q Consensus 34 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~ 110 (523)
++..++|..|+++...+|.++ +.++|+++|...-.+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 445689999999999999988 679999999642110 01234899999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeeechhHHHHHhcccccccCCCC
Q 009882 111 MVLIKMREIAEAYLGSTIKNAVVTVPAYFN-----DSQRQA---TKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 182 (523)
Q Consensus 111 ~~l~~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~ 182 (523)
++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.||++++.+++||+|||++|+.... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----~ 207 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----E 207 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC----C
Confidence 999999999999999999999999999998 778766 6999999999999999999999999976433 5
Q ss_pred CeEEEEEEeCCcceEEEEEEEeCC-------eEEEEEecCCCCCchHHHHHHHH-HHHHHHHHHh----cCCCC------
Q 009882 183 EKNVLIFDLGGGTFDVSLLTIEEG-------IFEVKATAGDTHLGGEDFDNRMV-NHFVQEFKRK----NKKDI------ 244 (523)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~~~~~-------~~~v~~~~~~~~lGG~~id~~l~-~~l~~~~~~~----~~~~~------ 244 (523)
++.+||+|+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|.+. .+.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~ 286 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFW 286 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhh
Confidence 778999999999999999998754 357899888 5899999999998 5777666421 11100
Q ss_pred -----------------------------CCCHHHH------------HHHHHHHHHHhhhcCCCceeEEEEecccCCee
Q 009882 245 -----------------------------SGNPRAL------------RRLRTACERAKRTLSSTAQTTIEIDSLYEGID 283 (523)
Q Consensus 245 -----------------------------~~~~~~~------------~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~ 283 (523)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+.. +
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~ 364 (450)
T PRK11678 287 NAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD--G 364 (450)
T ss_pred hhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC--C
Confidence 1123333 36789999999999999999998886543 4
Q ss_pred eEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhH
Q 009882 284 FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYG 363 (523)
Q Consensus 284 ~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~G 363 (523)
+...|||++|+++++++++++.++++++|+++++. ++.|+||||+|++|.|++.+++.||+.++. ..+|.++||.|
T Consensus 365 ~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~G 440 (450)
T PRK11678 365 LATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAG 440 (450)
T ss_pred cceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHH
Confidence 67899999999999999999999999999999875 579999999999999999999999776655 46999999999
Q ss_pred HHHHHHH
Q 009882 364 AAVQAAI 370 (523)
Q Consensus 364 aa~~a~~ 370 (523)
+|++|..
T Consensus 441 la~~a~~ 447 (450)
T PRK11678 441 LARWAQV 447 (450)
T ss_pred HHHHHHh
Confidence 9999875
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=3.2e-40 Score=331.57 Aligned_cols=301 Identities=23% Similarity=0.347 Sum_probs=236.5
Q ss_pred EEEEccccceEEEEE------ecceEEEEcCC--c-eEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhccccccCe
Q 009882 10 IGIDLGTTYSCVGVW------TTPSYVGFTDT--E-RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPF 80 (523)
Q Consensus 10 vGID~GTt~s~va~~------~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~~ 80 (523)
+||||||+||+++.. ..||+|++... . ..+|++|+....+.|.+.... + |+
T Consensus 6 ~gIDlGt~~~~i~~~~~~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~--~------------------pi 65 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKGIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI--R------------------PL 65 (336)
T ss_pred eEEEcccccEEEEECCCCEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--c------------------cC
Confidence 899999999999875 78999999953 2 479999988776666654420 0 11
Q ss_pred EEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceee
Q 009882 81 KVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMR 160 (523)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~ 160 (523)
.+ ..+...+.+..+++++.+.+..........+|||||++|+..||+++++|++.||++.+.
T Consensus 66 -----~~-------------G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~ 127 (336)
T PRK13928 66 -----RD-------------GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVY 127 (336)
T ss_pred -----CC-------------CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceE
Confidence 00 112344567777888775543322223347999999999999999999999999999999
Q ss_pred eechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhc
Q 009882 161 IINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKN 240 (523)
Q Consensus 161 li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 240 (523)
+++||+|||++|+.... ++..++|+|+||||||+++++.+. ....++..+||++||+.|++++.++|....
T Consensus 128 li~ep~Aaa~~~g~~~~----~~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i~~~l~~~~~~~~ 198 (336)
T PRK13928 128 LIEEPLAAAIGAGLDIS----QPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIRYIRKKYKLLI 198 (336)
T ss_pred ecccHHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHHHHHHHHHhchhc
Confidence 99999999999987543 456799999999999999999764 334567899999999999999987764211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCc----eeEEEEe--cccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009882 241 KKDISGNPRALRRLRTACERAKRTLSSTA----QTTIEID--SLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRD 314 (523)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~ 314 (523)
. ...||++|+.++... ...+.+. ....+.+..+.|++++|++++.+.++++.+.|.+.|+.
T Consensus 199 ~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~ 265 (336)
T PRK13928 199 G-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLER 265 (336)
T ss_pred C-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 257999999986531 1233332 22345566789999999999999999999999999999
Q ss_pred cC--CCCCCcc-eEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHH
Q 009882 315 AK--MDKSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 315 ~~--~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~ 371 (523)
++ +....++ .|+|+||+|++|.|++.+++.| +.++....||+++||+|||+++..+
T Consensus 266 ~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 266 TPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred CCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 86 3345577 7999999999999999999999 5678888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.2e-39 Score=326.36 Aligned_cols=299 Identities=25% Similarity=0.355 Sum_probs=240.6
Q ss_pred EEEEEccccceEEEEE------ecceEEEEcCCc---eEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhccccccC
Q 009882 9 AIGIDLGTTYSCVGVW------TTPSYVGFTDTE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWP 79 (523)
Q Consensus 9 vvGID~GTt~s~va~~------~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~ 79 (523)
.+||||||+|+++..- ..||+|+++++. ..+|.+|+.+..+.|.++... +-+.
T Consensus 6 ~~giDlGt~~~~i~~~~~~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi~---------------- 67 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKGIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPMK---------------- 67 (335)
T ss_pred eEEEEcccccEEEEECCCcEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecCC----------------
Confidence 5999999999987532 689999998543 579999999988888877542 1110
Q ss_pred eEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCc
Q 009882 80 FKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIK--NAVVTVPAYFNDSQRQATKDAGVIAGLN 157 (523)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l~~A~~~aGl~ 157 (523)
++ .+..-++++.+|++++..++..++..+. .+|||||++|+..||+++.+|++.||++
T Consensus 68 -------~G-------------~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~ 127 (335)
T PRK13929 68 -------DG-------------VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAK 127 (335)
T ss_pred -------CC-------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 00 1122378899999999988877776553 7999999999999999999999999999
Q ss_pred eeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q 009882 158 VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 237 (523)
Q Consensus 158 ~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 237 (523)
.+.+++||+|||++|+.... ....++|+|+||||||++++..++ ....++..+||++||+.|.+++.+.+.
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~----~~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id~~l~~~l~~~~~ 198 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVD----EPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIVSFVRKKYN 198 (335)
T ss_pred eeEeecCHHHHHHhcCCCcC----CCceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999976543 456799999999999999998765 334566789999999999999976542
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCc----eeEEEEe--cccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 009882 238 RKNKKDISGNPRALRRLRTACERAKRTLSSTA----QTTIEID--SLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKC 311 (523)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 311 (523)
... . ...||++|+.++... ...+.+. ....+.+..+.+++++|++++.+.+.++.+.|.+.
T Consensus 199 ----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~ 265 (335)
T PRK13929 199 ----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRAT 265 (335)
T ss_pred ----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1 267999999998732 2223332 22345557789999999999999999999999999
Q ss_pred HHHcCCC--CCCcc-eEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHH
Q 009882 312 LRDAKMD--KSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 312 l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
|+++... ...++ .|+|+||+|++|.+++++++.| +.++....||+++||+||+..-
T Consensus 266 L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 266 LEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 9998643 34577 6999999999999999999999 6778888899999999999773
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=3.2e-37 Score=309.65 Aligned_cols=300 Identities=25% Similarity=0.363 Sum_probs=225.1
Q ss_pred EEEEccccceEEEEE------ecceEEEEcCC-----c--eEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhcccc
Q 009882 10 IGIDLGTTYSCVGVW------TTPSYVGFTDT-----E--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMK 76 (523)
Q Consensus 10 vGID~GTt~s~va~~------~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~ 76 (523)
+||||||+||+++.. ..||+|++.++ + ..+|++|+....+.|.+.. +++.+..
T Consensus 5 ~giDlGt~~s~i~~~~~~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~------------ 70 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMKD------------ 70 (333)
T ss_pred eEEecCcceEEEEECCCCEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCCC------------
Confidence 999999999999875 68999999743 3 6799999887666555543 1222210
Q ss_pred ccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 009882 77 LWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGL 156 (523)
Q Consensus 77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl 156 (523)
+ .+..-+.+..+++++........+.....+|+|||++|+..||+++++|++.+|+
T Consensus 71 -----------------------G-~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~ 126 (333)
T TIGR00904 71 -----------------------G-VIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGA 126 (333)
T ss_pred -----------------------C-EEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 0 0111133444455554433222122223799999999999999999999999999
Q ss_pred ceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 009882 157 NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEF 236 (523)
Q Consensus 157 ~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~ 236 (523)
+.+.+++||+|||++|+.... .+..++|+|+||||||+++++.++ ....++..+||++||+.|.+++.+++
T Consensus 127 ~~~~li~ep~aaa~~~g~~~~----~~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~did~~l~~~l~~~~ 197 (333)
T TIGR00904 127 REVYLIEEPMAAAIGAGLPVE----EPTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEFDEAIINYIRRTY 197 (333)
T ss_pred CeEEEecCHHHHHHhcCCccc----CCceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHHHHHHHHHHHHHh
Confidence 999999999999999976543 456789999999999999998765 33456678999999999999998665
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCce-----eEEEEec--ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009882 237 KRKNKKDISGNPRALRRLRTACERAKRTLSSTAQ-----TTIEIDS--LYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (523)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~-----~~~~i~~--~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~ 309 (523)
. ... . +..||++|+.++.... ..+.+.. ...+......|+++++.+++.+.++++.+.+.
T Consensus 198 ~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~ 264 (333)
T TIGR00904 198 N----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVK 264 (333)
T ss_pred c----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 2 111 1 3579999999876322 1222211 11233445689999999999999999999999
Q ss_pred HHHHHcCCCC-CCc-c-eEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHH
Q 009882 310 KCLRDAKMDK-STV-H-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 310 ~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
+.++.++... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 265 ~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 265 RTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 9999876442 233 3 6999999999999999999999 678888889999999999998653
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.8e-37 Score=312.07 Aligned_cols=301 Identities=25% Similarity=0.371 Sum_probs=227.5
Q ss_pred CEEEEEccccceEEEEE------ecceEEEEcCC-c--eEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhcccccc
Q 009882 8 PAIGIDLGTTYSCVGVW------TTPSYVGFTDT-E--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLW 78 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~------~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~ 78 (523)
..|||||||++++++.. .+||+|++... + .++|++|..+..+.|.++... +
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~------------------ 65 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGIVLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R------------------ 65 (334)
T ss_pred ceeEEEcCcceEEEEECCCcEEEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e------------------
Confidence 35999999999998654 69999999754 2 489999998877666654321 1
Q ss_pred CeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009882 79 PFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (523)
Q Consensus 79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~ 158 (523)
|+ .++ . +.--+.+..+++++......... ....+|+|+|++|+..||+++++|++.||++.
T Consensus 66 pi-----~~G------------~-i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~ 126 (334)
T PRK13927 66 PM-----KDG------------V-IADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGARE 126 (334)
T ss_pred cC-----CCC------------e-ecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Confidence 11 000 0 01112334455554443322221 12379999999999999999999999999999
Q ss_pred eeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHH
Q 009882 159 MRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKR 238 (523)
Q Consensus 159 ~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~ 238 (523)
+.+++||+|||++|+.... .+..++|+|+||||||+++++.++ ....+...+||++||+.|.+++.+++.
T Consensus 127 ~~li~ep~aaa~~~g~~~~----~~~~~lvvDiGggttdvs~v~~~~-----~~~~~~~~lGG~~id~~l~~~l~~~~~- 196 (334)
T PRK13927 127 VYLIEEPMAAAIGAGLPVT----EPTGSMVVDIGGGTTEVAVISLGG-----IVYSKSVRVGGDKFDEAIINYVRRNYN- 196 (334)
T ss_pred eccCCChHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEecCC-----eEeeCCcCChHHHHHHHHHHHHHHHhC-
Confidence 9999999999999987543 456789999999999999998765 334456789999999999999986653
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhhhcCCCce----eEEEE--ecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 009882 239 KNKKDISGNPRALRRLRTACERAKRTLSSTAQ----TTIEI--DSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCL 312 (523)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~----~~~~i--~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 312 (523)
... . ...||++|+.++.... ..+.+ +....+.+..+.|+|++|++++.+.++++.+.|.++|
T Consensus 197 ---~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l 264 (334)
T PRK13927 197 ---LLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVAL 264 (334)
T ss_pred ---cCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 2568999999876432 22333 2233455667899999999999999999999999999
Q ss_pred HHcCCCC--CCcc-eEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHH
Q 009882 313 RDAKMDK--STVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 313 ~~~~~~~--~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
++++... ..++ .|+|+||+|++|.++++|++.| +.++....+|+++||+||++++..
T Consensus 265 ~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 265 EQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 9886432 2244 5999999999999999999999 577888889999999999999765
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.8e-36 Score=303.81 Aligned_cols=302 Identities=25% Similarity=0.344 Sum_probs=230.2
Q ss_pred EEEEEccccceEEEEE------ecceEEEEcCC---ceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhccccccC
Q 009882 9 AIGIDLGTTYSCVGVW------TTPSYVGFTDT---ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWP 79 (523)
Q Consensus 9 vvGID~GTt~s~va~~------~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~ 79 (523)
.+||||||++|+++++ .+||+|++.+. ..++|++|++.....|.+.. +++ |
T Consensus 10 ~vgiDlGt~~t~i~~~~~~~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~------------------p 69 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKGIVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR------------------P 69 (335)
T ss_pred ceEEEcCCCcEEEEECCCCEEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee------------------c
Confidence 4999999999999876 68999999752 36899999887655554421 111 1
Q ss_pred eEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009882 80 FKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (523)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~ 159 (523)
+ .++ .+..-+....+++++.+.+..........+|+|+|++|+..+|+.+.+|++.+|++.+
T Consensus 70 i-----~~G-------------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~ 131 (335)
T PRK13930 70 L-----KDG-------------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREV 131 (335)
T ss_pred C-----CCC-------------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeE
Confidence 1 000 1112245666777776555443344456899999999999999999999999999999
Q ss_pred eeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 009882 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (523)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 239 (523)
.+++||+|||++|+.... .....+|+|+||||||++++..+. ....+...+||.+||+.|.+++.+++.
T Consensus 132 ~lv~ep~AAa~a~g~~~~----~~~~~lVvDiG~gttdvs~v~~g~-----~~~~~~~~lGG~~id~~l~~~l~~~~~-- 200 (335)
T PRK13930 132 YLIEEPMAAAIGAGLPVT----EPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIVQYVRRKYN-- 200 (335)
T ss_pred EecccHHHHHHhcCCCcC----CCCceEEEEeCCCeEEEEEEEeCC-----EEeecCcCchhHHHHHHHHHHHHHHhC--
Confidence 999999999999876543 344679999999999999998765 234566899999999999999987642
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhhcCCCce----eEEEEe--cccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009882 240 NKKDISGNPRALRRLRTACERAKRTLSSTAQ----TTIEID--SLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR 313 (523)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~----~~~~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 313 (523)
... + ...||++|+.++.... ..+.+. ....+.+....|++++|++++.+.++++.+.+.++++
T Consensus 201 --~~~--~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~ 269 (335)
T PRK13930 201 --LLI--G-------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLE 269 (335)
T ss_pred --CCC--C-------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 2578999999976432 223332 2223445578899999999999999999999999999
Q ss_pred HcCCCC--CCcce-EEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHH
Q 009882 314 DAKMDK--STVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 314 ~~~~~~--~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~ 371 (523)
++.... ..++. |+|+||+|++|.++++|++.| +.++....+|+++||+||++++...
T Consensus 270 ~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 270 KTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred hCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 875332 23454 999999999999999999999 5677778899999999999997643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1e-33 Score=276.69 Aligned_cols=299 Identities=25% Similarity=0.366 Sum_probs=219.7
Q ss_pred EEEEEccccceEEEEE------ecceEEEEcCCc---eEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhccccccC
Q 009882 9 AIGIDLGTTYSCVGVW------TTPSYVGFTDTE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWP 79 (523)
Q Consensus 9 vvGID~GTt~s~va~~------~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~ 79 (523)
-+||||||+++.++.- ..||+|+++... ..+|++|+....+.|.+... .+|
T Consensus 3 ~igIDLGT~~t~i~~~~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~--------------------~~P 62 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV--------------------VRP 62 (326)
T ss_dssp EEEEEE-SSEEEEEETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------------E-S
T ss_pred ceEEecCcccEEEEECCCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------------Ecc
Confidence 5899999999999743 789999998642 46999999887766665421 011
Q ss_pred eEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009882 80 FKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (523)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~ 159 (523)
.+ .-.+.--++...+|+++.+.+.......-..++++||+.-++.+|+++.+|+..||.+.+
T Consensus 63 l~------------------~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V 124 (326)
T PF06723_consen 63 LK------------------DGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKV 124 (326)
T ss_dssp EE------------------TTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEE
T ss_pred cc------------------CCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 11 011233467778888888766653222345899999999999999999999999999999
Q ss_pred eeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 009882 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (523)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 239 (523)
.+++||.|||+..++.-. +....||+|+||||||++++...+ +.......+||++||++|.+|+.++|.-.
T Consensus 125 ~li~ep~AaAiGaGl~i~----~~~g~miVDIG~GtTdiavislgg-----iv~s~si~~gG~~~DeaI~~~ir~~y~l~ 195 (326)
T PF06723_consen 125 YLIEEPIAAAIGAGLDIF----EPRGSMIVDIGGGTTDIAVISLGG-----IVASRSIRIGGDDIDEAIIRYIREKYNLL 195 (326)
T ss_dssp EEEEHHHHHHHHTT--TT----SSS-EEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHHHHHHHHHSEE
T ss_pred EEecchHHHHhcCCCCCC----CCCceEEEEECCCeEEEEEEECCC-----EEEEEEEEecCcchhHHHHHHHHHhhCcc
Confidence 999999999999987654 566789999999999999997654 33344468999999999999999987411
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhhcCCCc----eeEEEE--ecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009882 240 NKKDISGNPRALRRLRTACERAKRTLSSTA----QTTIEI--DSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR 313 (523)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----~~~~~i--~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 313 (523)
-=.+.||++|+.++... ...+.+ ..+..|....+.|+.+++.+.+.+.+.++.+.|+++|+
T Consensus 196 -------------Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le 262 (326)
T PF06723_consen 196 -------------IGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLE 262 (326)
T ss_dssp ---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12368999999987542 223444 45567888899999999999999999999999999999
Q ss_pred HcCCCCC-C-c-ceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHH
Q 009882 314 DAKMDKS-T-V-HDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 314 ~~~~~~~-~-i-~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
+...... | . +.|+|+||+|+++.+.+.|++.+ +.++....+|..+||.||....
T Consensus 263 ~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 263 KTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp TS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred hCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 7642211 2 2 46999999999999999999999 7899999999999999998654
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=100.00 E-value=1.1e-31 Score=254.69 Aligned_cols=203 Identities=20% Similarity=0.308 Sum_probs=173.9
Q ss_pred eeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCC
Q 009882 103 FAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 182 (523)
Q Consensus 103 ~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~ 182 (523)
+.--+..+.+|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++.+.++.||.|||++|...
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------- 108 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------- 108 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------
Confidence 3456788999999999999999998999999999999999999999999999999999999999999988542
Q ss_pred CeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 009882 183 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAK 262 (523)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 262 (523)
..+|+|+||||||+++++.+. +....+..+||++||+.|.+.+. .+ ..+||++|
T Consensus 109 --~~~vvDiGggtt~i~i~~~G~-----i~~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K 162 (239)
T TIGR02529 109 --NGAVVDVGGGTTGISILKKGK-----VIYSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYK 162 (239)
T ss_pred --CcEEEEeCCCcEEEEEEECCe-----EEEEEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 249999999999999986433 22345678999999999876552 11 26899999
Q ss_pred hhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHH
Q 009882 263 RTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQ 342 (523)
Q Consensus 263 ~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~ 342 (523)
+.++ +.+++.+++.+.++++.+.+++.|++. .++.|+|+||+|++|.+++.++
T Consensus 163 ~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 163 RGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHH
Confidence 8754 145677899999999999999999864 3578999999999999999999
Q ss_pred HhhCCcccccCCCCchhhHhHHHH
Q 009882 343 DFFNGKELCKNINPDEAVAYGAAV 366 (523)
Q Consensus 343 ~~f~~~~v~~~~~p~~aVa~Gaa~ 366 (523)
+.| +.++..+.||++++|.|||+
T Consensus 216 ~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 216 KQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHh-CCCcccCCCCCeehhheeec
Confidence 999 67888899999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.98 E-value=2.2e-30 Score=242.90 Aligned_cols=305 Identities=24% Similarity=0.332 Sum_probs=241.1
Q ss_pred CCEEEEEccccceEEEEE------ecceEEEEcC--Cc---eEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhhccc
Q 009882 7 GPAIGIDLGTTYSCVGVW------TTPSYVGFTD--TE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDM 75 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~------~~Ps~v~~~~--~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~ 75 (523)
+..+|||+||.|+.|+.- ..||+|++.. +. ..+|.+|+.+..+.|.+... .|-+
T Consensus 6 s~diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a--iRPm------------- 70 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA--IRPM------------- 70 (342)
T ss_pred cccceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceE--Eeec-------------
Confidence 347999999999998865 7899999986 32 46999999887777776542 0111
Q ss_pred cccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 009882 76 KLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLG-STIKNAVVTVPAYFNDSQRQATKDAGVIA 154 (523)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~l~~A~~~a 154 (523)
.| -.+.--++...+++|+.+......+ .....++++||..-++.+|+++++|++.|
T Consensus 71 ----------kd-------------GVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~a 127 (342)
T COG1077 71 ----------KD-------------GVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESA 127 (342)
T ss_pred ----------CC-------------cEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhc
Confidence 01 1233456777788888776653222 33447999999999999999999999999
Q ss_pred CCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 009882 155 GLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 234 (523)
Q Consensus 155 Gl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 234 (523)
|...+.++.||.|||+..++.-. .+..-||||+||||||++++.+.+ +.+.....+||+.||+.+.+|+.+
T Consensus 128 Ga~~V~lieEp~aAAIGaglpi~----ep~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~~De~Ii~yvr~ 198 (342)
T COG1077 128 GAREVYLIEEPMAAAIGAGLPIM----EPTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDKMDEAIIVYVRK 198 (342)
T ss_pred cCceEEEeccHHHHHhcCCCccc----CCCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecchhhHHHHHHHHH
Confidence 99999999999999999876554 444569999999999999999988 777777899999999999999988
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCc--------eeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHH
Q 009882 235 EFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA--------QTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCME 306 (523)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~--------~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~ 306 (523)
+|+--.+ -+.+|++|+...... +..+.-..+..|..-.+.++.+++.+.+++.++++.+
T Consensus 199 ~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ive 265 (342)
T COG1077 199 KYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVE 265 (342)
T ss_pred HhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHH
Confidence 8752222 145888888864422 2334444556777778899999999999999999999
Q ss_pred HHHHHHHHcCCC--CCCcce-EEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHh
Q 009882 307 PVEKCLRDAKMD--KSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 307 ~i~~~l~~~~~~--~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~ 372 (523)
.++..|++..-. .+-++. ++|+||+|.+..+.+.|++.. +.++....+|.++||+|+......+.
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 999999986432 222555 999999999999999999987 77888899999999999998776554
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.97 E-value=9.9e-29 Score=238.78 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeE
Q 009882 106 EEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 185 (523)
Q Consensus 106 ~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~ 185 (523)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||++...++.||.|++.+|... .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5677889999999999998988999999999999999999999999999999999999999999987542 1
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhc
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTL 265 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~L 265 (523)
.+|+|+||||||+++++- +.+ ...++..+||++||+.|++++. . -+.+||++|+.+
T Consensus 137 ~~vvDIGggtt~i~v~~~--g~~---~~~~~~~~GG~~it~~Ia~~l~--------i-----------~~~eAE~lK~~~ 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILKD--GKV---VYSADEPTGGTHMSLVLAGAYG--------I-----------SFEEAEQYKRDP 192 (267)
T ss_pred cEEEEeCCCcEEEEEEEC--CeE---EEEecccCchHHHHHHHHHHhC--------C-----------CHHHHHHHHhcc
Confidence 489999999999999863 332 2235679999999999987762 1 136789999875
Q ss_pred CCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhh
Q 009882 266 SSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF 345 (523)
Q Consensus 266 s~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 345 (523)
+ +++++.+++++.++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|
T Consensus 193 ~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 193 K----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 3 357789999999999999999999864 4789999999999999999999999
Q ss_pred CCcccccCCCCchhhHhHHHHHH
Q 009882 346 NGKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 346 ~~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
+.++..+.+|+.++|.|||+|+
T Consensus 246 -g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 -GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -CCCcccCCCchHHHHHHHHhhC
Confidence 6788889999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=6.9e-23 Score=208.80 Aligned_cols=194 Identities=22% Similarity=0.294 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCch
Q 009882 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 221 (523)
Q Consensus 142 ~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG 221 (523)
...+.+.+|++.||+++..++.||.|+|++|..... .+..++|+|+||||||++++.. +.+ .......+||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~----~~~~~~vvDiG~gtt~i~i~~~--g~~---~~~~~i~~GG 228 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE----KELGVCLIDIGGGTTDIAVYTG--GSI---RYTKVIPIGG 228 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch----hcCCEEEEEeCCCcEEEEEEEC--CEE---EEEeeecchH
Confidence 456778889999999999999999999998854332 4567999999999999999973 322 2234468999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCC------ceeEEEEecccCCeeeEEEEcHHHHHH
Q 009882 222 EDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST------AQTTIEIDSLYEGIDFYSTITRARFEE 295 (523)
Q Consensus 222 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~~~~~itr~~~e~ 295 (523)
++||+.+.+.+. ....+||++|+.++.. ....+.++... .+....+++++|++
T Consensus 229 ~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ 287 (371)
T TIGR01174 229 NHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAE 287 (371)
T ss_pred HHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHH
Confidence 999999876541 1247899999998763 23456665443 34557999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHcCCCCCCcce-EEEecCccCcHHHHHHHHHhhCCccccc------------CCCCchhhH
Q 009882 296 LNMDLFRKCMEPVE-KCLRDAKMDKSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCK------------NINPDEAVA 361 (523)
Q Consensus 296 ~~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~aVa 361 (523)
++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+ .++.. ..+|..++|
T Consensus 288 ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 288 IIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHH
Confidence 99999999999997 999998776 56777 9999999999999999999994 32211 126788888
Q ss_pred hHHHHH
Q 009882 362 YGAAVQ 367 (523)
Q Consensus 362 ~Gaa~~ 367 (523)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.91 E-value=1.9e-22 Score=207.96 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=148.8
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 009882 144 RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 223 (523)
Q Consensus 144 r~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~ 223 (523)
.+.+.+|++.||+++..++.||.|+|.++..... ++..++|+|+||||||+++++- +. +.......+||++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e----~~~gv~vvDiGggtTdisv~~~--G~---l~~~~~i~~GG~~ 238 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE----RELGVCVVDIGGGTMDIAVYTG--GA---LRHTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh----hhcCeEEEEeCCCceEEEEEEC--CE---EEEEeeeechHHH
Confidence 3444669999999999999999999999865433 4667999999999999999973 32 3345557899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCC------ceeEEEEecccCCeeeEEEEcHHHHHHHH
Q 009882 224 FDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST------AQTTIEIDSLYEGIDFYSTITRARFEELN 297 (523)
Q Consensus 224 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~~~~~itr~~~e~~~ 297 (523)
+++.|+..+.- ...+||++|+.+... ....+.++...... ...+++.+|.+++
T Consensus 239 it~dIa~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHH
Confidence 99999865521 136899999765431 23456665433222 2488999999999
Q ss_pred HHHHHHHHHHHHH-------HHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCccccc------------CCCCch
Q 009882 298 MDLFRKCMEPVEK-------CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK------------NINPDE 358 (523)
Q Consensus 298 ~~~~~~~~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~ 358 (523)
.+.++++++.+.+ .+..+++....++.|+|+||+|++|.+++.+++.|+ .++.. ..+|..
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHH
Confidence 9977777776654 456667776778999999999999999999999994 33321 248999
Q ss_pred hhHhHHHHHHHH
Q 009882 359 AVAYGAAVQAAI 370 (523)
Q Consensus 359 aVa~Gaa~~a~~ 370 (523)
++|.|.++|+..
T Consensus 377 ata~Gl~~~~~~ 388 (420)
T PRK09472 377 STAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.83 E-value=6.4e-19 Score=176.88 Aligned_cols=206 Identities=26% Similarity=0.359 Sum_probs=166.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEE
Q 009882 132 VVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVK 211 (523)
Q Consensus 132 VitVPa~~~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~ 211 (523)
++|+|.. --+.+.+|.+.+|+++..++.+|.|+|.+...... ++.+++++|+||||||+++++-+. +
T Consensus 159 vit~~~~----~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE----kelGv~lIDiG~GTTdIai~~~G~-----l 225 (418)
T COG0849 159 VITGPKN----ILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE----KELGVALIDIGGGTTDIAIYKNGA-----L 225 (418)
T ss_pred EEEcchH----HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc----HhcCeEEEEeCCCcEEEEEEECCE-----E
Confidence 4555543 35678889999999999999999999998876655 677899999999999999998665 6
Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCC------ceeEEEEecccCCeeeE
Q 009882 212 ATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST------AQTTIEIDSLYEGIDFY 285 (523)
Q Consensus 212 ~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~~~ 285 (523)
.+.+..++||++++..|+.-|.-. +..||+.|...... ....+.++...+.. .
T Consensus 226 ~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~ 284 (418)
T COG0849 226 RYTGVIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSDI--P 284 (418)
T ss_pred EEEeeEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCcc--c
Confidence 666778999999999999877433 26789999987543 23446665544333 5
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCc-cccc----------CC
Q 009882 286 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK-ELCK----------NI 354 (523)
Q Consensus 286 ~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v~~----------~~ 354 (523)
..+++.++.+++++-+.+++.++++.|++.+....-...|+|+||++.+|.+.+..++.|+.. .+.. ..
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhcc
Confidence 689999999999999999999999999999987666889999999999999999999999421 1111 23
Q ss_pred CCchhhHhHHHHHHHHH
Q 009882 355 NPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 355 ~p~~aVa~Gaa~~a~~~ 371 (523)
+|..+.|.|..+|+...
T Consensus 365 ~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 365 NPAFSTAVGLLLYGALM 381 (418)
T ss_pred CchhhhhHHHHHHHhhc
Confidence 68999999999998854
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.77 E-value=1.1e-17 Score=170.82 Aligned_cols=295 Identities=18% Similarity=0.180 Sum_probs=187.7
Q ss_pred EEEEccccceEEEEE-------ecceEEEEcC----------CceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhh
Q 009882 10 IGIDLGTTYSCVGVW-------TTPSYVGFTD----------TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQ 72 (523)
Q Consensus 10 vGID~GTt~s~va~~-------~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 72 (523)
|.||+||.++++++. .+||+++... ....+|++|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~----------------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL----------------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCC-----------------------
Confidence 789999999999987 7889887653 235667666542110
Q ss_pred ccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HH
Q 009882 73 GDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD-AG 151 (523)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~-A~ 151 (523)
.....+|++ + + .+.--+....+++++.+.... ....-..+++++|..++..+|+.+.+ ++
T Consensus 59 ~~~~~~P~~-----~------------G-~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lf 119 (371)
T cd00012 59 GLELIYPIE-----H------------G-IVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMF 119 (371)
T ss_pred ceEEccccc-----C------------C-EEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhh
Confidence 000011210 0 1 122234555666666543211 11223578999999999988888877 57
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 231 (523)
+..|++.+.++.+|.+|+++++. .+-+|+|+|+++|+++.+.- + .-+........+||+++|+.|.++
T Consensus 120 e~~~~~~v~~~~~~~~a~~~~g~---------~~~lVVDiG~~~t~i~pv~~--G-~~~~~~~~~~~~GG~~l~~~l~~~ 187 (371)
T cd00012 120 ETFNVPALYVAIQAVLSLYASGR---------TTGLVVDSGDGVTHVVPVYD--G-YVLPHAIKRLDLAGRDLTRYLKEL 187 (371)
T ss_pred ccCCCCEEEEechHHHHHHhcCC---------CeEEEEECCCCeeEEEEEEC--C-EEchhhheeccccHHHHHHHHHHH
Confidence 77999999999999999998864 46799999999999998863 2 222233345689999999999998
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCcee-------------EEEE-ecccCCeeeEEEEcHHHH---H
Q 009882 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQT-------------TIEI-DSLYEGIDFYSTITRARF---E 294 (523)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~-------------~~~i-~~~~~~~~~~~~itr~~~---e 294 (523)
+..+.. ..+. ..-...++..|+.+..-... .... -.+.++. .+.++.+.| |
T Consensus 188 l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er~~~~E 255 (371)
T cd00012 188 LRERGY---ELNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNERFRAPE 255 (371)
T ss_pred HHhcCC---Cccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHHhhChH
Confidence 865421 0010 11223466666664332110 0000 0011222 345555443 2
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHcCCCC--CCcceEEEecCccCcHHHHHHHHHhhC----C-----cccccCCCCch
Q 009882 295 ELNMD-----LFRKCMEPVEKCLRDAKMDK--STVHDVVLVGGSTRIPKVQQLLQDFFN----G-----KELCKNINPDE 358 (523)
Q Consensus 295 ~~~~~-----~~~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~----~-----~~v~~~~~p~~ 358 (523)
.++.| ....+.+.|.++++.+..+. .-.+.|+|+||+|++|.+.++|++.+. . ..+....+|..
T Consensus 256 ~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
T cd00012 256 ILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKY 335 (371)
T ss_pred hcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccc
Confidence 23333 22367788888888764332 237889999999999999999988773 1 12345568899
Q ss_pred hhHhHHHHHHHH
Q 009882 359 AVAYGAAVQAAI 370 (523)
Q Consensus 359 aVa~Gaa~~a~~ 370 (523)
++-+||+++|..
T Consensus 336 ~aw~G~si~as~ 347 (371)
T cd00012 336 SVWLGGSILASL 347 (371)
T ss_pred cEEeCchhhcCc
Confidence 999999999865
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.73 E-value=7.3e-18 Score=147.02 Aligned_cols=197 Identities=22% Similarity=0.333 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEE
Q 009882 110 SMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIF 189 (523)
Q Consensus 110 ~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~ 189 (523)
-.+.+++++.+|+.+|.++.+..-++|+.-.+...+...+..+.||+++...++||+|||.-..+... .|+
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg---------~VV 145 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG---------GVV 145 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC---------cEE
Confidence 45678999999999999999999999999988888888899999999999999999999976655443 899
Q ss_pred EeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCc
Q 009882 190 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA 269 (523)
Q Consensus 190 D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~ 269 (523)
|+|||||-+|+++-++ ..+..|..-||.++...|+-+. +++ +++||+.|+.-...
T Consensus 146 DiGGGTTGIsi~kkGk-----Viy~ADEpTGGtHmtLvlAG~y--------gi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKGK-----VIYSADEPTGGTHMTLVLAGNY--------GIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcCc-----EEEeccCCCCceeEEEEEeccc--------CcC-----------HhHHHHhhhccccc-
Confidence 9999999999999776 5556677899988877666432 222 35677777651111
Q ss_pred eeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcc
Q 009882 270 QTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKE 349 (523)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 349 (523)
+|.-..+.|++++..+.+.+.++..+ +..++|+||+|.-|.+.+..+++| +.+
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~ 253 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQ 253 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccc
Confidence 12223467899999999988887655 667999999999999999999999 788
Q ss_pred cccCCCCchhhHhHHHHH
Q 009882 350 LCKNINPDEAVAYGAAVQ 367 (523)
Q Consensus 350 v~~~~~p~~aVa~Gaa~~ 367 (523)
+..+..|....-.|-|+-
T Consensus 254 v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 254 VHLPQHPLYMTPLGIASS 271 (277)
T ss_pred cccCCCcceechhhhhhc
Confidence 888888888877777753
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.73 E-value=7e-17 Score=165.16 Aligned_cols=291 Identities=20% Similarity=0.200 Sum_probs=182.0
Q ss_pred CEEEEEccccceEEEEE-------ecceEEEEcCC---------ceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhh
Q 009882 8 PAIGIDLGTTYSCVGVW-------TTPSYVGFTDT---------ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~-------~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (523)
..|+||+||.++++++. .+||+|+...+ ..++|+.|..... ..
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~----~~----------------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRG----GL----------------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCC----Cc-----------------
Confidence 46999999999999986 68998887532 2356766632110 00
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEeCCCCCHHHHHHHHH
Q 009882 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGS--TIKNAVVTVPAYFNDSQRQATKD 149 (523)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~l~~ 149 (523)
...+|++ + ..+.--+....+++++... .++. .-..++++.|...+..+|+.+.+
T Consensus 61 ---~~~~P~~-----~-------------G~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e 116 (373)
T smart00268 61 ---ELKYPIE-----H-------------GIVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILE 116 (373)
T ss_pred ---eecCCCc-----C-------------CEEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHH
Confidence 0011221 0 1123345566677777653 2222 23468999999999999999988
Q ss_pred HH-HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHH
Q 009882 150 AG-VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (523)
Q Consensus 150 A~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 228 (523)
.+ +..|++.+.++.+|.+|+++++ ..+-+|+|+|+++|+++.+.- +. -+........+||.++|+.|
T Consensus 117 ~lfE~~~~~~v~~~~~~~~a~~~~g---------~~~~lVVDiG~~~t~v~pv~~--G~-~~~~~~~~~~~GG~~l~~~l 184 (373)
T smart00268 117 IMFETFNFPALYIAIQAVLSLYASG---------RTTGLVIDSGDGVTHVVPVVD--GY-VLPHAIKRIDIAGRDLTDYL 184 (373)
T ss_pred HhhccCCCCeEEEeccHHHHHHhCC---------CCEEEEEecCCCcceEEEEEC--CE-EchhhheeccCcHHHHHHHH
Confidence 75 5779999999999999999876 236799999999999999872 22 22233344689999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCc-------------------eeEEEEecccCCeeeEEEEc
Q 009882 229 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA-------------------QTTIEIDSLYEGIDFYSTIT 289 (523)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~-------------------~~~~~i~~~~~~~~~~~~it 289 (523)
.+++...- ..... ..-...++.+|+.+..-. ...+. +.+|..+ .+.
T Consensus 185 ~~~l~~~~---~~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~~--~~~ 249 (373)
T smart00268 185 KELLSERG---YQFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNTI--KVG 249 (373)
T ss_pred HHHHHhcC---CCCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCCCEE--EEC
Confidence 98886510 00110 111234555565542211 01111 1233332 333
Q ss_pred HHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCCCC--CcceEEEecCccCcHHHHHHHHHhh----C-C--ccccc
Q 009882 290 RARF---EELNMDL-----FRKCMEPVEKCLRDAKMDKS--TVHDVVLVGGSTRIPKVQQLLQDFF----N-G--KELCK 352 (523)
Q Consensus 290 r~~~---e~~~~~~-----~~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f----~-~--~~v~~ 352 (523)
.+.| |.++.|. ...+.+.|.++|+++..+.. -.+.|+|+||+|++|.+.++|.+.+ + . ..+..
T Consensus 250 ~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~ 329 (373)
T smart00268 250 NERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA 329 (373)
T ss_pred hHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEec
Confidence 3332 2233331 23677788888877643221 2567999999999999999998876 2 1 23444
Q ss_pred CCCCchhhHhHHHHHHHH
Q 009882 353 NINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 353 ~~~p~~aVa~Gaa~~a~~ 370 (523)
..++..++=+||+++|..
T Consensus 330 ~~~~~~~~W~G~silas~ 347 (373)
T smart00268 330 PPERKYSVWLGGSILASL 347 (373)
T ss_pred CCCCccceEeCcccccCc
Confidence 456677888898887754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.67 E-value=1.7e-14 Score=144.63 Aligned_cols=208 Identities=14% Similarity=0.190 Sum_probs=138.4
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------------CCceeeeechhHHHHHhcccccccC----CCCCeEEEEEEeCC
Q 009882 131 AVVTVPAYFNDSQR-QATKDAGVIA------------GLNVMRIINEPTAAAIAYGLDKKAT----SVGEKNVLIFDLGG 193 (523)
Q Consensus 131 ~VitVPa~~~~~qr-~~l~~A~~~a------------Gl~~~~li~Ep~Aaa~~~~~~~~~~----~~~~~~vlV~D~Gg 193 (523)
++...|..+...++ +.+++..... -+..+.++.||.+|.+.+....... ...+..++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44599998865554 6777655321 1234678999999988776543211 12345789999999
Q ss_pred cceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEE
Q 009882 194 GTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTI 273 (523)
Q Consensus 194 gT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~ 273 (523)
||||++++. +..+. ....+....|..++.+.+.+.+..+. .+.. .++. ++.+..+.-+ +
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~--~~~~---~ie~~l~~g~----------i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGAS--ITPY---MLEKGLEYGA----------C 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCC--CCHH---HHHHHHHcCc----------E
Confidence 999999996 33332 34445578999999999988885432 1222 1221 1211111111 1
Q ss_pred EEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccC
Q 009882 274 EIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKN 353 (523)
Q Consensus 274 ~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 353 (523)
.+. .+.. +.+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++.|++.|+.. ...
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~ 319 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKA 319 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEc
Confidence 111 1111 122 4567778888888888888877753 3478999999999987 899999999754 456
Q ss_pred CCCchhhHhHHHHHHHHHhC
Q 009882 354 INPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 354 ~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.||..|.|+|...+|..+.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 79999999999999987664
No 37
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.64 E-value=9.2e-15 Score=145.73 Aligned_cols=209 Identities=17% Similarity=0.206 Sum_probs=133.3
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceE
Q 009882 127 TIKNAVVTVPAYFNDSQRQATKDAGVIA---------GLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFD 197 (523)
Q Consensus 127 ~~~~~VitVPa~~~~~qr~~l~~A~~~a---------Gl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~D 197 (523)
.+..+|+..|..+...||+.+++..... -++.+.+++||.+|.+.+..+..........++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4557999999999999999999876532 3355788999999988876543222235667899999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEec
Q 009882 198 VSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDS 277 (523)
Q Consensus 198 vsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~ 277 (523)
+.++. +..+ +....+....|..++-+.+.+.+.+++. .....+.. .+....++-|.. .
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~---~i~~~l~~g~~~-------~----- 238 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID---RIDLALRTGKQP-------R----- 238 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH---HHHHHHHhCCce-------e-----
Confidence 98774 3333 3455566778988888888877766543 22111111 111111111110 0
Q ss_pred ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCc
Q 009882 278 LYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPD 357 (523)
Q Consensus 278 ~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 357 (523)
..+.. +.|+ +.++ .....+++++..+.+.+. ...+++.|+|+||++.+ +++.|++.||...+....||.
T Consensus 239 -~~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~l--l~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 239 -IYQKP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAFL--FKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred -eccee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHHH--HHHHHHHHCCCCeeEecCCcH
Confidence 01111 1222 1122 233334444443333331 12458899999999985 889999999876666678999
Q ss_pred hhhHhHHHHHH
Q 009882 358 EAVAYGAAVQA 368 (523)
Q Consensus 358 ~aVa~Gaa~~a 368 (523)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 38
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.64 E-value=2.1e-14 Score=148.37 Aligned_cols=225 Identities=16% Similarity=0.111 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHhccccccc-CCCCCe
Q 009882 107 EISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKA-TSVGEK 184 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~-~~~~~~ 184 (523)
+....+++++...... ....-..+++|.|..++..+|+.+.+. .+..+++.+.+..+|.+|++++...... ......
T Consensus 82 d~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 4555666665432111 111223589999999999999999775 4556899999999999999886332110 000223
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhh
Q 009882 185 NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 264 (523)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ 264 (523)
+-||+|+|.|+|+++.+.- |.. +........+||.++++.|.+++.++. ..+... .....++++|+.
T Consensus 161 tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~ 227 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEK 227 (414)
T ss_pred eEEEEECCCCceEEEEEEC--CEE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHh
Confidence 5699999999999988762 222 222223458999999999999885431 111111 112346666766
Q ss_pred cCCCce-----------------eEEEEecccCCeeeEEEEcHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCC
Q 009882 265 LSSTAQ-----------------TTIEIDSLYEGIDFYSTITRARFE---ELNMDLF------RKCMEPVEKCLRDAKMD 318 (523)
Q Consensus 265 Ls~~~~-----------------~~~~i~~~~~~~~~~~~itr~~~e---~~~~~~~------~~~~~~i~~~l~~~~~~ 318 (523)
++.... ..+..+....+....+.|..+.|. -++.|-+ ..+.+.|.+.|.++..+
T Consensus 228 ~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d 307 (414)
T PTZ00280 228 YCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPID 307 (414)
T ss_pred cCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChh
Confidence 543210 112222222233345677776663 3444422 14567777888776533
Q ss_pred CC--CcceEEEecCccCcHHHHHHHHHhh
Q 009882 319 KS--TVHDVVLVGGSTRIPKVQQLLQDFF 345 (523)
Q Consensus 319 ~~--~i~~ViLvGG~s~~p~v~~~l~~~f 345 (523)
.. -.++|+|+||+|.+|.+.++|++.+
T Consensus 308 ~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 308 CRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred hHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 22 2678999999999999999998877
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.57 E-value=1e-13 Score=143.03 Aligned_cols=305 Identities=19% Similarity=0.232 Sum_probs=178.4
Q ss_pred CCCCEEEEEccccceEEEEE-------ecceEEEEcCC-----ceEecHhhHhhhhhCcCchhhhchhhcCCCCCChhhh
Q 009882 5 GEGPAIGIDLGTTYSCVGVW-------TTPSYVGFTDT-----ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQ 72 (523)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~-------~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 72 (523)
++..+|-||+|+.++++++. .+|++++.... ...+|..+... .+.. .+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~---~~-------------- 61 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSP---RSNL---EL-------------- 61 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHT---GTGE---EE--------------
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccc---hhhe---ee--------------
Confidence 35678999999999999998 57777765433 34677764321 0000 00
Q ss_pred ccccccCeEEEecCCCCceEEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-H
Q 009882 73 GDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA-G 151 (523)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-~ 151 (523)
..|++ . ..+.--+....+++++..... .....-..++++.|..++..+|+.+.+. .
T Consensus 62 ----~~p~~-----------------~-g~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lf 118 (393)
T PF00022_consen 62 ----RSPIE-----------------N-GVIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILF 118 (393)
T ss_dssp ----EESEE-----------------T-TEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHH
T ss_pred ----eeecc-----------------c-ccccccccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhh
Confidence 01110 0 012223455666666655321 1122334689999999999999988764 5
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 231 (523)
+..|++.+.++.+|.+|+++++.. +-||+|+|.+.|.++.+. ++. -+........+||.++++.|.+.
T Consensus 119 E~~~~~~v~~~~~~~~a~~~~g~~---------tglVVD~G~~~t~v~pV~--dG~-~~~~~~~~~~~GG~~lt~~l~~l 186 (393)
T PF00022_consen 119 EKFGVPSVYFIPSPLLALYASGRT---------TGLVVDIGYSSTSVVPVV--DGY-VLPHSIKRSPIGGDDLTEYLKEL 186 (393)
T ss_dssp HTS--SEEEEEEHHHHHHHHTTBS---------SEEEEEESSS-EEEEEEE--TTE-E-GGGBEEES-SHHHHHHHHHHH
T ss_pred cccccceeeeeecccccccccccc---------cccccccceeeeeeeeee--ecc-ccccccccccccHHHHHHHHHHH
Confidence 678999999999999999988654 349999999999998875 222 12222234579999999999988
Q ss_pred HHHHHHHhcC-CCCC------CCHHHHHHHHHHHHHHhhhc---C------------CCceeEEEEecccCCeeeEEEEc
Q 009882 232 FVQEFKRKNK-KDIS------GNPRALRRLRTACERAKRTL---S------------STAQTTIEIDSLYEGIDFYSTIT 289 (523)
Q Consensus 232 l~~~~~~~~~-~~~~------~~~~~~~~l~~~~e~~K~~L---s------------~~~~~~~~i~~~~~~~~~~~~it 289 (523)
+.++-..... .... ........-....+.+|+.+ + ......+.++ ++. .+.+.
T Consensus 187 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i~~~ 261 (393)
T PF00022_consen 187 LKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TIILG 261 (393)
T ss_dssp HHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EEEES
T ss_pred HHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--ccccc
Confidence 8773110000 0000 00110111122233334332 1 1222233332 333 34566
Q ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCCC--cceEEEecCccCcHHHHHHHHHhhC-----
Q 009882 290 RARFEELNMDLFR----------------KCMEPVEKCLRDAKMDKST--VHDVVLVGGSTRIPKVQQLLQDFFN----- 346 (523)
Q Consensus 290 r~~~e~~~~~~~~----------------~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~----- 346 (523)
.+.| .+.+.+++ .+.+.|.+++.++..+... .+.|+|+||+|++|.+.++|.+.+.
T Consensus 262 ~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~ 340 (393)
T PF00022_consen 262 KERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPS 340 (393)
T ss_dssp THHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGT
T ss_pred cccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhc
Confidence 5554 22333322 5778888888876543222 6789999999999999999987662
Q ss_pred --CcccccCC-CCchhhHhHHHHHHHH
Q 009882 347 --GKELCKNI-NPDEAVAYGAAVQAAI 370 (523)
Q Consensus 347 --~~~v~~~~-~p~~aVa~Gaa~~a~~ 370 (523)
..++.... +|..++=+||+++|..
T Consensus 341 ~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 341 STKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp TSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred cccceeccCchhhhhcccccceeeecc
Confidence 12445555 7899999999999864
No 40
>PTZ00004 actin-2; Provisional
Probab=99.53 E-value=8.2e-13 Score=134.85 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHhcccccccCCCCC
Q 009882 107 EISSMVLIKMREIAEAYLG--STIKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE 183 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~l~~-A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~ 183 (523)
+....+++++.. ..++ ..-..+++|-|..++..+|+.+.+ ..+..+++.+.+..+|.+|+++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 455566666432 1222 223467899999999999988866 4567899999999999999988753
Q ss_pred eEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhh
Q 009882 184 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKR 263 (523)
Q Consensus 184 ~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 263 (523)
.+-+|+|+|.+.|+++.+.- | +-+.......++||.++++.|.+.+..+ +..+. +.. -...+++.|+
T Consensus 149 ~tglVVDiG~~~t~v~pV~d--G-~~l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~~---~~~~~~~iKe 215 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIYE--G-YSLPHAIHRLDVAGRDLTEYMMKILHER-----GTTFT--TTA---EKEIVRDIKE 215 (378)
T ss_pred ceEEEEECCCCcEEEEEEEC--C-EEeecceeeecccHHHHHHHHHHHHHhc-----CCCCC--cHH---HHHHHHHHhh
Confidence 24599999999999987762 2 2223333446899999999999887543 11111 111 1123455555
Q ss_pred hcCCCc-----------------eeEEEEecccCCeeeEEEEcHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC
Q 009882 264 TLSSTA-----------------QTTIEIDSLYEGIDFYSTITRARF---EELNMDL------FRKCMEPVEKCLRDAKM 317 (523)
Q Consensus 264 ~Ls~~~-----------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~------~~~~~~~i~~~l~~~~~ 317 (523)
.+.... ...+.+ .+|.. +.+..+.| |-++.|- ...+.+.|.+++.++..
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~~y~l---Pdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~ 290 (378)
T PTZ00004 216 KLCYIALDFDEEMGNSAGSSDKYEESYEL---PDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI 290 (378)
T ss_pred cceeecCCHHHHHhhhhcCccccceEEEC---CCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh
Confidence 542211 111111 23332 34555554 2344443 23456777788877653
Q ss_pred CCC--CcceEEEecCccCcHHHHHHHHHhh----CC---cccccCCCCchhhHhHHHHHHH
Q 009882 318 DKS--TVHDVVLVGGSTRIPKVQQLLQDFF----NG---KELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 318 ~~~--~i~~ViLvGG~s~~p~v~~~l~~~f----~~---~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
+.. -...|+|+||+|.+|.+.++|.+.+ +. .++..+.++..++=+||+++|.
T Consensus 291 d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 291 DIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred hHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 322 2678999999999999999998766 21 2344455677788888888875
No 41
>PTZ00452 actin; Provisional
Probab=99.52 E-value=2.5e-12 Score=130.84 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHhcccccccCCCCCeE
Q 009882 107 EISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 185 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~ 185 (523)
+.+..+++|+..... .....-..+++|-|...+..+|+.+.+. .+..+++.+.+...|.+++++++. .+
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~---------~t 149 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK---------TI 149 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC---------ce
Confidence 344456666543211 1222235689999999999999999775 566788889999999999988653 24
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhc
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTL 265 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~L 265 (523)
-+|+|+|.+.+.++-+. +| +-+.......++||.++++.|.+.+.++ +...... .. ...++..|+.+
T Consensus 150 glVVDiG~~~t~v~PV~--dG-~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~ 216 (375)
T PTZ00452 150 GLVVDSGEGVTHCVPVF--EG-HQIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERL 216 (375)
T ss_pred eeeecCCCCcceEEEEE--CC-EEeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHh
Confidence 59999999999998776 22 2223333345799999999998877432 1111111 10 12244555554
Q ss_pred CCCc----------------eeEEEEecccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--
Q 009882 266 SSTA----------------QTTIEIDSLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMDK-- 319 (523)
Q Consensus 266 s~~~----------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~~~~~i~~~l~~~~~~~-- 319 (523)
+... .....+ .+|. .+.+..+.| |-+++|-+ ..+.++|.+++.++....
T Consensus 217 c~v~~d~~~e~~~~~~~~~~~~~y~L---PDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~ 291 (375)
T PTZ00452 217 CYTALDPQDEKRIYKESNSQDSPYKL---PDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQ 291 (375)
T ss_pred ccccCcHHHHHHHhhccCCcCceEEC---CCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHH
Confidence 3211 011222 2333 245666655 23333432 245677777777664332
Q ss_pred CCcceEEEecCccCcHHHHHHHHHhh----CC---cccccCCCCchhhHhHHHHHHHH
Q 009882 320 STVHDVVLVGGSTRIPKVQQLLQDFF----NG---KELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 320 ~~i~~ViLvGG~s~~p~v~~~l~~~f----~~---~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
.-.++|+|+||+|.+|.+.++|++.+ +. .++..+.++..++=+|++++|..
T Consensus 292 ~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 292 ELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred HhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 22678999999999999999998766 21 12344446667788899888753
No 42
>PTZ00281 actin; Provisional
Probab=99.49 E-value=1.6e-12 Score=132.58 Aligned_cols=234 Identities=17% Similarity=0.175 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHhcccccccCCCCC
Q 009882 107 EISSMVLIKMREIAEAYLGS--TIKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE 183 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~l~~-A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~ 183 (523)
+....+++++... .+.. .-..+++|-|..+...+|+.+.+ ..+..+++.+.+..+|.+++++++.
T Consensus 81 d~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------- 148 (376)
T PTZ00281 81 DDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------- 148 (376)
T ss_pred HHHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC---------
Confidence 3445566665431 2222 23467889999999999999977 5677899999999999999987653
Q ss_pred eEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhh
Q 009882 184 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKR 263 (523)
Q Consensus 184 ~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 263 (523)
.+-+|+|+|.+.+.++-+.-+ +.+........+||.++++.|.+.+..+ +..... . .. ...+++.|+
T Consensus 149 ~tglVVDiG~~~t~v~PV~dG---~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe 215 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIYEG---YALPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKE 215 (376)
T ss_pred ceEEEEECCCceEEEEEEEec---ccchhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHH
Confidence 255999999999998866532 2223333446899999999998877543 111111 1 11 133556666
Q ss_pred hcCCCc----------------eeEEEEecccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC
Q 009882 264 TLSSTA----------------QTTIEIDSLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMDK 319 (523)
Q Consensus 264 ~Ls~~~----------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~~~~~i~~~l~~~~~~~ 319 (523)
.++... .....+ .+|.. +.+..+.| |-+++|-+ ..+.+.|.+++.++....
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~y~L---Pdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~ 290 (376)
T PTZ00281 216 KLAYVALDFEAEMQTAASSSALEKSYEL---PDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDI 290 (376)
T ss_pred hcEEecCCchHHHHhhhcCcccceeEEC---CCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhH
Confidence 643211 011111 23332 45555444 33444422 245667777777664332
Q ss_pred C--CcceEEEecCccCcHHHHHHHHHhh----CC---cccccCCCCchhhHhHHHHHHHH
Q 009882 320 S--TVHDVVLVGGSTRIPKVQQLLQDFF----NG---KELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 320 ~--~i~~ViLvGG~s~~p~v~~~l~~~f----~~---~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
. -.+.|+|+||+|.+|.+.++|++.+ +. .++..+.++..++=+|++++|..
T Consensus 291 r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 291 RKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 2 2568999999999999999988766 21 23444457778889999988763
No 43
>PTZ00466 actin-like protein; Provisional
Probab=99.45 E-value=7.2e-12 Score=127.56 Aligned_cols=236 Identities=15% Similarity=0.145 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHhcccccccCCCCCeE
Q 009882 107 EISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 185 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~-A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~ 185 (523)
+....+++++.+... ....-..+++|-|+.++..+|+.+.+ ..+..+++.+.+..+|.+|+++++. .+
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~---------~t 155 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK---------TN 155 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC---------ce
Confidence 344555555543211 12223467899999999999999866 4667888899999999999988753 25
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhc
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTL 265 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~L 265 (523)
-+|+|+|.+.|.++-+. +| +-+.......++||.++++.|.+.+.++ +.... .. .-...++..|+.+
T Consensus 156 glVVD~G~~~t~v~PV~--~G-~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~---~~~~~v~~iKe~~ 222 (380)
T PTZ00466 156 GTVLDCGDGVCHCVSIY--EG-YSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFN--TS---AEMEVVKNMKENC 222 (380)
T ss_pred EEEEeCCCCceEEEEEE--CC-EEeecceeEecCchhHHHHHHHHHHHhc-----CCCCC--cH---HHHHHHHHHHHhC
Confidence 59999999999997765 22 2223333346899999999998877432 11111 11 1123345556554
Q ss_pred CCCc-------------eeEEEEecccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCCC--Cc
Q 009882 266 SSTA-------------QTTIEIDSLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMDKS--TV 322 (523)
Q Consensus 266 s~~~-------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i 322 (523)
+.-. ......+ +.+|. .+.+..+.| |-++.|-+ ..+.+.|.+.+.++..+.. -.
T Consensus 223 c~v~~d~~~e~~~~~~~~~~~~y~-LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~ 299 (380)
T PTZ00466 223 CYVSFNMNKEKNSSEKALTTLPYI-LPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLY 299 (380)
T ss_pred eEecCChHHHHhhccccccceeEE-CCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHh
Confidence 3210 0001111 12333 245666555 23343321 2456677777776643322 26
Q ss_pred ceEEEecCccCcHHHHHHHHHhhC-----C--cccccCCCCchhhHhHHHHHHH
Q 009882 323 HDVVLVGGSTRIPKVQQLLQDFFN-----G--KELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 323 ~~ViLvGG~s~~p~v~~~l~~~f~-----~--~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
.+|+|+||+|.+|.+.++|++.+. . ..+..+.++..++=+|++++|.
T Consensus 300 ~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 300 SHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 789999999999999999987762 1 2244455667788889998875
No 44
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.34 E-value=7.5e-12 Score=124.50 Aligned_cols=174 Identities=16% Similarity=0.285 Sum_probs=100.0
Q ss_pred ceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 009882 157 NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEF 236 (523)
Q Consensus 157 ~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~ 236 (523)
..+.+++||.||.+.+..... +...++|+|+||+|+|++++. ++.-.+....+...+|-..+.+.+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~----~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD----EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT---
T ss_pred eeEEEEcccHHHHHHHHHhhc----ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh-
Confidence 457889999999998765522 346799999999999999986 2211223344556899998888888777541
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009882 237 KRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAK 316 (523)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~ 316 (523)
. .. .+. ..++++-........ +.......+ ..+++.+.++..++++.+.|.+.+.+
T Consensus 214 ~----~~--~s~-------~~~~~ii~~~~~~~~----~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 214 G----ID--TSE-------LQIDDIIRNRKDKGY----LRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp S----BH--HHH-------HHHHHHHHTTT-HHH----HHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred c----CC--CcH-------HHHHHHHHhhhccce----ecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 0 00 000 011111100000000 000000000 12344455555555555555555432
Q ss_pred CCCCCcceEEEecCccCcHHHHHHHHHhhC--CcccccCCCCchhhHhHHH
Q 009882 317 MDKSTVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNINPDEAVAYGAA 365 (523)
Q Consensus 317 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVa~Gaa 365 (523)
..+++.|+|+||++.+ +.+.|++.|+ ...+....||+.|.|+|-+
T Consensus 270 --~~~~~~I~~vGGGA~l--l~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGAIL--LKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTHHH--HHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcHHH--HHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 3468899999999986 9999999985 3567788899999999965
No 45
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.20 E-value=4.7e-10 Score=113.72 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHcCCceeeeechhHHHHHhcc-ccc-ccCCCCCe-EEEEEEeCCcceEEEEEEEeCCeEEEEEecCC
Q 009882 140 NDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYG-LDK-KATSVGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGD 216 (523)
Q Consensus 140 ~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~-~~~-~~~~~~~~-~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~ 216 (523)
.....+.+.++++.||++...+..+|.|.+-.+. +.. ........ +++++|+|+++|+++++.-+. +.....
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~-----~~~~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGR-----MLFTRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCe-----EEEEEE
Confidence 3556788889999999999999999999876652 100 00011233 499999999999999997544 444556
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHH
Q 009882 217 THLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEEL 296 (523)
Q Consensus 217 ~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~ 296 (523)
..+||.++++.+.+.+ +.+ ..+||+.|........ .-.+.
T Consensus 216 i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~~ 255 (348)
T TIGR01175 216 VPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL---------------------YDPEV 255 (348)
T ss_pred eechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc---------------------hhHHH
Confidence 7899999999887543 111 2567887775321110 01234
Q ss_pred HHHHHHHHHHHHHHHHHHc--CCCCCCcceEEEecCccCcHHHHHHHHHhhC
Q 009882 297 NMDLFRKCMEPVEKCLRDA--KMDKSTVHDVVLVGGSTRIPKVQQLLQDFFN 346 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 346 (523)
+++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.|+
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 5666667777777776532 2233458999999999999999999999993
No 46
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.12 E-value=8.5e-09 Score=99.47 Aligned_cols=116 Identities=14% Similarity=0.186 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHhcccccccCCCCCeE
Q 009882 107 EISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 185 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~-A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~ 185 (523)
|+..+.++|..+.-. ..+..-.-++||-|++-+...|+.+.+ +.+...++...|..+|+++|++.+.. +
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs---------t 155 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRS---------T 155 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCC---------c
Confidence 566666776664221 122223468999999999999998876 56778889999999999999987533 5
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 235 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 235 (523)
.||+|+|++++.++-+. +|.+-..+... ..+||+.++..+.+.+..+
T Consensus 156 alVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 156 ALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred eEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 69999999999999876 23222233333 6899999999999888754
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.11 E-value=7.9e-10 Score=111.42 Aligned_cols=181 Identities=17% Similarity=0.230 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHhcccccc--cCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCC
Q 009882 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKK--ATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 219 (523)
Q Consensus 142 ~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~--~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~l 219 (523)
..-+...++++.|||+...+--+|.|.+-.+..... ......+.++++|+|+.++.++++.- +.+ .......+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~--g~~---~f~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQN--GKP---IFSRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEET--TEE---EEEEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEEC--CEE---EEEEEEee
Confidence 456677889999999998887788876655533211 11123467999999999999999873 332 23344589
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHH
Q 009882 220 GGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 299 (523)
Q Consensus 220 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~ 299 (523)
||.++++.+++.+.-. ..++|+.|..-+.. .+...+.+.+
T Consensus 211 G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~---------------------~~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELGID-------------------FEEAEELKRSGGLP---------------------EEYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT---------------------HHHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCC---------------------cchHHHHHHH
Confidence 9999999999765322 24566666652110 0233455667
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccc---------cCC----------CCch
Q 009882 300 LFRKCMEPVEKCLRD--AKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELC---------KNI----------NPDE 358 (523)
Q Consensus 300 ~~~~~~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~---------~~~----------~p~~ 358 (523)
.++++...|.+.++- .......|+.|+|+||+++++.|.+.|++.+ +.++. ... .|..
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 329 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQF 329 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHH
Confidence 777777777777762 2234457999999999999999999999999 33321 111 2567
Q ss_pred hhHhHHHHHH
Q 009882 359 AVAYGAAVQA 368 (523)
Q Consensus 359 aVa~Gaa~~a 368 (523)
++|.|.|+..
T Consensus 330 avA~GLAlR~ 339 (340)
T PF11104_consen 330 AVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 8999999864
No 48
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.04 E-value=1e-08 Score=105.14 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCe
Q 009882 129 KNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (523)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~-A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (523)
..+++|-|..+...+|+.+.+ .++...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++-+.- .
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-------~~g~ViD~G~~~t~v~PV~D---G 176 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-------ETGLVIDSGDSVTHVIPVVD---G 176 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-------CceEEEEcCCCceeeEeeec---c
Confidence 478999999999999988866 567788888889999998888765432 36799999999999997763 2
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHH
Q 009882 208 FEVKATAGDTHLGGEDFDNRMVNHFVQE 235 (523)
Q Consensus 208 ~~v~~~~~~~~lGG~~id~~l~~~l~~~ 235 (523)
+.+........+||++++..|.+.+...
T Consensus 177 ~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 3333344456899999999998888764
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=1.3e-07 Score=90.26 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHhccccc-ccCC-CCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCch
Q 009882 144 RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDK-KATS-VGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 221 (523)
Q Consensus 144 r~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~-~~~~-~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG 221 (523)
-+....|++.||++...+--|..|.--+|.... .... ....+++|+|+|+..+.++++.-+. .-+..+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe-----eeeEeeccCcH
Confidence 345578999999999888888888866664211 1111 1222478999999999999998655 44456678999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHH
Q 009882 222 EDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLF 301 (523)
Q Consensus 222 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~ 301 (523)
+.++..+.+.+.-. ...++.+|.....-. +--.+...+++
T Consensus 226 ~Qlt~~i~r~~~L~-------------------~~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAYSLT-------------------EEKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHhCCC-------------------hhHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 99999987655211 134566666532221 12234455666
Q ss_pred HHHHHHHHHHHHHc--CCCCCCcceEEEecCccCcHHHHHHHHHhh
Q 009882 302 RKCMEPVEKCLRDA--KMDKSTVHDVVLVGGSTRIPKVQQLLQDFF 345 (523)
Q Consensus 302 ~~~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 345 (523)
+++.+.|.+.|+-. .-...+|++|+|.||++.+..+.+.+.+..
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 66666666666522 223456999999999999999999999998
No 50
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.92 E-value=6.7e-07 Score=97.56 Aligned_cols=327 Identities=16% Similarity=0.234 Sum_probs=184.4
Q ss_pred EecHhhHhhhhh----CcCchhhhchhhcCC--------CCCChhhhc----cccccCeEEEecCCCCceEEE-EEcC--
Q 009882 38 LIGDAAKNQVAM----NPTNTVFDAKRLIGR--------RFSDASVQG----DMKLWPFKVIAGPADKPMIGV-NYKG-- 98 (523)
Q Consensus 38 ~~G~~A~~~~~~----~~~~~~~~~k~~lg~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v-~~~~-- 98 (523)
-+|.+|...+.. .....+.+.||.|-. .|+...... .....|+.-..+++|.+.+.+ ....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 478888665543 344566788888733 222111111 111223333334555555444 1111
Q ss_pred --CceeeeHHHHHHHHHHHHHHHHHHHhCC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 009882 99 --EEKQFAAEEISSMVLIKMREIAEAYLGS--------------TIKNAVVTVPAYFNDSQRQATKDAGVIA-------- 154 (523)
Q Consensus 99 --~~~~~~~~~v~~~~l~~l~~~a~~~~~~--------------~~~~~VitVPa~~~~~qr~~l~~A~~~a-------- 154 (523)
-...||-.-+..++|..+...|..+.+. ....+++|||+.-...+|+.+++.++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1234666778888888888777666553 3557999999999999999998887766
Q ss_pred CCc---------------------eeeeechhHHHHHhccccc------------------cc-------CCCCCeEEEE
Q 009882 155 GLN---------------------VMRIINEPTAAAIAYGLDK------------------KA-------TSVGEKNVLI 188 (523)
Q Consensus 155 Gl~---------------------~~~li~Ep~Aaa~~~~~~~------------------~~-------~~~~~~~vlV 188 (523)
|.. +..=-+|.+|.-+-|..+. .. ...+.-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 1112366666544442211 00 0122346899
Q ss_pred EEeCCcceEEEEEEEe----CC-eEEEEEe---cCCCCCchHHHHHHHHH-HHHHHHHHh----------------cCCC
Q 009882 189 FDLGGGTFDVSLLTIE----EG-IFEVKAT---AGDTHLGGEDFDNRMVN-HFVQEFKRK----------------NKKD 243 (523)
Q Consensus 189 ~D~GggT~Dvsv~~~~----~~-~~~v~~~---~~~~~lGG~~id~~l~~-~l~~~~~~~----------------~~~~ 243 (523)
+|+||||||+.|-... .+ ...+.-. -.+-.+.|+||=..+++ +++..+.+. ++.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999987765 22 2222211 12357899988665554 444333221 1111
Q ss_pred CCCC--HH-------------HHHHHHHHHHHHhhhcCCCceeEEEEecc---------------------------cCC
Q 009882 244 ISGN--PR-------------ALRRLRTACERAKRTLSSTAQTTIEIDSL---------------------------YEG 281 (523)
Q Consensus 244 ~~~~--~~-------------~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~---------------------------~~~ 281 (523)
..+ .+ ...+++.++|+.-..- ........+..+ .+=
T Consensus 651 -g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~-~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 651 -GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLD-PSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 000 00 0123445555432210 000001111000 011
Q ss_pred eeeEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCc----------
Q 009882 282 IDFYSTITRARFEELNM---DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK---------- 348 (523)
Q Consensus 282 ~~~~~~itr~~~e~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---------- 348 (523)
.+..+.|+..++...+. -.+...+..+-+++...+ .|-++|+|=-|++|.|+..+++..|--
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34456888888888774 555666666666665544 568999999999999999999987310
Q ss_pred ---------ccccCCCCchhhHhHHHHHHHHH
Q 009882 349 ---------ELCKNINPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 349 ---------~v~~~~~p~~aVa~Gaa~~a~~~ 371 (523)
+-..-.||...||.||.+++...
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 11234489999999999876543
No 51
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.82 E-value=5.5e-09 Score=105.32 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcce
Q 009882 129 KNAVVTVPAYFNDSQRQATKDAGVI------------AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTF 196 (523)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~A~~~------------aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~ 196 (523)
.-.+||.++.. ++.++++++. ||++...++. |.|++.+.... + ++..++++|+||||+
T Consensus 89 ~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E----ke~gVa~IDIGgGTT 158 (475)
T PRK10719 89 GAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E----RNTRVLNIDIGGGTA 158 (475)
T ss_pred cEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h----ccCceEEEEeCCCce
Confidence 34577877654 4455555554 6666655655 88888776532 3 677899999999999
Q ss_pred EEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 009882 197 DVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 227 (523)
Q Consensus 197 Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 227 (523)
++++++-+. +.+.+...+||+.++..
T Consensus 159 ~iaVf~~G~-----l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 159 NYALFDAGK-----VIDTACLNVGGRLIETD 184 (475)
T ss_pred EEEEEECCE-----EEEEEEEecccceEEEC
Confidence 999998655 55566688999888644
No 52
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.80 E-value=2.1e-07 Score=91.68 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=107.9
Q ss_pred eeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 009882 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (523)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 239 (523)
.+++|.+|-|....+... +.-.|+|+||-.+-+..+.- ++.+.-......+.-|.-.|=+.+++.+-
T Consensus 249 ~vitEItcHA~GA~~l~P------~vrTIIDIGGQDsK~I~ld~-~G~V~dF~MNDKCAAGTGrFLE~mA~~Lg------ 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP------GTRTVLDIGGQDTKGIQIDD-HGIVENFQMNDRCAAGCGRYLGYIADEMN------ 315 (432)
T ss_pred ceeeeHHHHHHHHHHHCC------CCCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccchHHHHHHHHHcC------
Confidence 466999998876543322 23389999998777543322 35554444445455565555555554441
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 009882 240 NKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDK 319 (523)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~ 319 (523)
.+ +..+-..+.+++....-+..+.+..++-.-.. +.--.++ ++++..+...+...+...+.+..
T Consensus 316 --i~-------leEl~~lA~~a~~pv~ISS~CtVFAESEVIsl-la~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~--- 379 (432)
T TIGR02259 316 --MG-------LHELGPLAMKSSKPARINSTCTVFAGAELRDR-LALGDKR---EDILAGLHRAIILRAISIISRSG--- 379 (432)
T ss_pred --CC-------HHHHHHHHhcCCCCCCcCCcceEEehHHHHHH-HHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---
Confidence 11 22333445555555555566666554311000 0011233 34444555555555555555432
Q ss_pred CCcceEEEecCccCcHHHHHHHHHhhC----CcccccCCCCchhhHhHHHHHH
Q 009882 320 STVHDVVLVGGSTRIPKVQQLLQDFFN----GKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 320 ~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
.--+.|+|+||.++.+.+.+.|++.+. +.++..+.+|+.+-|+|||++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112469999999999999999999984 4667888999999999999875
No 53
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.78 E-value=2.1e-07 Score=89.36 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=109.3
Q ss_pred eeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 009882 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (523)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 239 (523)
..++|.+|.+.+..+... +.-.|+|+||..+-+..++ ++.+.-.........|+..|.+.+++.+.-.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~------~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~--- 141 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP------EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSV--- 141 (248)
T ss_pred CceEEhhHHHHHHHHHCC------CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCH---
Confidence 367888887665433322 1125999999999888887 45554455667678899889888887662111
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhh----cCCCceeEEEEeccc-CCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009882 240 NKKDISGNPRALRRLRTACERAKRT----LSSTAQTTIEIDSLY-EGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRD 314 (523)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~----Ls~~~~~~~~i~~~~-~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~ 314 (523)
++++..+.. ..-+..+.+..+.-. ... ....+ .++++..+.+.+...+.+.+..
T Consensus 142 ----------------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~---~~di~~~~~~~va~~i~~~~~~ 200 (248)
T TIGR00241 142 ----------------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVK---KEDILAGVYESIAERVAEMLQR 200 (248)
T ss_pred ----------------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCC---HHHHHHHHHHHHHHHHHHHHhh
Confidence 222332222 222233333332110 000 00112 3456667777777766666654
Q ss_pred cCCCCCCcc-eEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHH
Q 009882 315 AKMDKSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (523)
Q Consensus 315 ~~~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~ 366 (523)
.+ ++ .|+|+||.++++++.+.+++.+ +.++..+.+|..+.|+|||+
T Consensus 201 ~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 201 LK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred cC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 43 44 7999999999999999999999 67888889999999999997
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.74 E-value=3.7e-06 Score=80.90 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=101.5
Q ss_pred eeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 009882 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (523)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 239 (523)
..++|-+|.|....+... ++.-.|+|+||-..-+..+. .++.+.-......+.-|.-.|=+.+++.|.
T Consensus 106 ~~v~EItaha~Ga~~~~p-----p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg------ 173 (293)
T TIGR03192 106 KAITEIACHARGANYMGG-----NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDLMQ------ 173 (293)
T ss_pred cceeeHHHHHHHHHHhcC-----CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHHcC------
Confidence 458999998876543321 12338999999766655542 344444444444445554444444555441
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-hhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009882 240 NKKDISGNPRALRRLRTACERAK-RTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMD 318 (523)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K-~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~ 318 (523)
.+ +..+-..+.+.+ ....-+..+.+..++-.-. -..--.+++ +++..+...+...+...+++.++.
T Consensus 174 --i~-------leel~~~a~~~~~~p~~Iss~CtVFAeSevi~-l~~~G~~~e---dI~aGl~~sia~rv~~~~~~~~i~ 240 (293)
T TIGR03192 174 --IP-------IADLGPRSFDVETEPEAVSSICVVFAKSEALG-LLKAGYTKN---MVIAAYCQAMAERVVSLLERIGVE 240 (293)
T ss_pred --CC-------HHHHHHHHHhcCCCCCCcCCcceEeccHhHHH-HHHCCCCHH---HHHHHHHHHHHHHHHHHhcccCCC
Confidence 11 111212222222 2333344444444321100 000012333 334444555554444454443322
Q ss_pred CCCcceEEEecCccCcHHHHHHHHHhhCCcccc-cCCCCchhhHhHHHHHHHHH
Q 009882 319 KSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELC-KNINPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 319 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~aVa~Gaa~~a~~~ 371 (523)
+.|+|+||.++.+.+++.+++.+ +.++. .+.+|+.+-|+|||++|...
T Consensus 241 ----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 241 ----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred ----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHHH
Confidence 36999999999999999999999 55665 57789999999999998643
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.73 E-value=1.6e-06 Score=86.73 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=101.1
Q ss_pred eeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 009882 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (523)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 239 (523)
..++|-+|.+.......+. .++.-.|+|+||--.- ++.+.++.+.-....+.+.-|+-.|=+.+++.|.
T Consensus 220 ~iv~EItaha~GA~~L~p~---~~~v~TIIDIGGQDsK--~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg------ 288 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLADK---QEGPATVIDIGGMDNK--AISVWDGIPDNFTMGGICAGASGRFLEMTAKRLG------ 288 (404)
T ss_pred ceEEEEhhHHHHHHHhccc---CCCCcEEEEeCCCceE--EEEEcCCceeeEEEcCcccccCcHHHHHHHHHhC------
Confidence 3578888876543222110 1234599999995444 4555566665455555555555555555555541
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-hhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Q 009882 240 NKKDISGNPRALRRLRTACERAK-RTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEK-CLRDAKM 317 (523)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K-~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~-~l~~~~~ 317 (523)
.+ ...+-..+.+.+ +...-+..+.+.-++-.-. -...-.++ ++++..+...+.+.+.. +++..+.
T Consensus 289 --i~-------ieEl~~lA~~~~~~pv~IsS~CtVFaeSevIs-ll~~G~~~---eDIaAGl~~SIa~rv~~~l~~~~~i 355 (404)
T TIGR03286 289 --VD-------ITELGKLALKGMPEKVRMNSYCIVFGIQDLVT-ALAEGASP---EDVAAAACHSVAEQVYEQQLQEIDV 355 (404)
T ss_pred --CC-------HHHHHHHHHhCCCCCCCccCcccccccHhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 11 222333344443 2222223333222210000 00001223 33444444444444442 3443332
Q ss_pred CCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHH
Q 009882 318 DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 318 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
-+.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+-|+|||++|.
T Consensus 356 ----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 ----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred ----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 235999999999999999999999 67888899999999999999984
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.68 E-value=4.6e-06 Score=81.36 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=110.8
Q ss_pred eeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q 009882 158 VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 237 (523)
Q Consensus 158 ~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 237 (523)
.-..++|-.|-+.+.....+ +. =.|+|+||--..+. .+.+|.+.-..-..-+.-|.-.|=+.+++.|
T Consensus 209 aD~~~~Ei~ah~kgA~~f~p-----~~-dtIiDIGGQD~K~i--~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L----- 275 (396)
T COG1924 209 ADKVVVEISAHAKGARYFAP-----DV-DTVIDIGGQDSKVI--KLEDGKVDDFTMNDKCAAGTGRFLEVIARRL----- 275 (396)
T ss_pred CCcceeeeehhHHHHHHhCC-----CC-cEEEEecCcceeEE--EEeCCeeeeeEeccccccccchHHHHHHHHh-----
Confidence 34566777776554432222 11 18999999655554 4457766655555555555545544555444
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEeccc-----CCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH-H
Q 009882 238 RKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY-----EGIDFYSTITRARFEELNMDLFRKCMEPVEK-C 311 (523)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~-----~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~-~ 311 (523)
+.+ +..+-+.+++++..-.-+..+.+..++-. .| ...|+++..+...+...+-. +
T Consensus 276 ---gv~-------v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G---------~~~EdI~AGl~~Sv~~~v~~~~ 336 (396)
T COG1924 276 ---GVD-------VEELGKLALKATPPVKINSRCAVFAESEVISALAEG---------ASPEDILAGLAYSVAENVAEKV 336 (396)
T ss_pred ---CCC-------HHHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHH
Confidence 221 23344556666665445555555544311 11 12456666666666554444 5
Q ss_pred HHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHH
Q 009882 312 LRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 312 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~ 371 (523)
++...... -|+|+||.+....+.+++.+.+ +.++..+.+|+..-|.|||++|...
T Consensus 337 ~~~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 337 IKRVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred hhccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 55444332 2999999999999999999999 6889999999999999999998643
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=98.59 E-value=5.5e-06 Score=80.23 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=42.9
Q ss_pred CcceEEEec-CccCcHHHHHHHHHhhC--CcccccCCCCchhhHhHHHHHHH
Q 009882 321 TVHDVVLVG-GSTRIPKVQQLLQDFFN--GKELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 321 ~i~~ViLvG-G~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|+.+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 79999999999998873 56788899999999999999875
No 58
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.51 E-value=7.4e-07 Score=82.98 Aligned_cols=191 Identities=19% Similarity=0.203 Sum_probs=103.9
Q ss_pred HHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 009882 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (523)
Q Consensus 150 A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 229 (523)
.-+..|.++..-=-|+++|++....... .+..+.++|+||||||.+++.-++ .+.-+.-.| .|+.++..+.
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPG----t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlAG----AG~mVTmlI~ 174 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPG----TDKPLAILDMGGGSTDASIINRDG-EVTAIHLAG----AGNMVTMLIN 174 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHH
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCC----CCCCeEEEecCCCcccHHHhCCCC-cEEEEEecC----CchhhHHHHH
Confidence 4456788888888999999998765544 455689999999999999998654 333232222 4666665554
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCC----------ceeEEEEeccc------------CC--eeeE
Q 009882 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST----------AQTTIEIDSLY------------EG--IDFY 285 (523)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~----------~~~~~~i~~~~------------~~--~~~~ 285 (523)
..+ +.+ + +.-+|..|+---.. .-....++... ++ ..+.
T Consensus 175 sEL--------Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~ 236 (332)
T PF08841_consen 175 SEL--------GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIP 236 (332)
T ss_dssp HHC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEES
T ss_pred Hhh--------CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecC
Confidence 332 111 1 24467777641000 00000000000 00 1111
Q ss_pred EEEcHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--CCCCcceEEEecCccCcHHHHHHHHHhhCCc-------ccccCCC
Q 009882 286 STITRARFEELNMDLFRKC-MEPVEKCLRDAKM--DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKNIN 355 (523)
Q Consensus 286 ~~itr~~~e~~~~~~~~~~-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~ 355 (523)
..++-+++..+=...-+++ ..-..++|++... +..+|+.|+|+||++.=--|-+++.+.+..- .+.-..-
T Consensus 237 ~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eG 316 (332)
T PF08841_consen 237 GDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEG 316 (332)
T ss_dssp STS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTST
T ss_pred CCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccC
Confidence 1223333333322322222 2233344544322 2346999999999999888888888877432 4566678
Q ss_pred CchhhHhHHHHH
Q 009882 356 PDEAVAYGAAVQ 367 (523)
Q Consensus 356 p~~aVa~Gaa~~ 367 (523)
|..|||.|.++.
T Consensus 317 PRNAVATGLvls 328 (332)
T PF08841_consen 317 PRNAVATGLVLS 328 (332)
T ss_dssp TSTHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 999999999874
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.42 E-value=7.1e-06 Score=81.54 Aligned_cols=191 Identities=18% Similarity=0.225 Sum_probs=102.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCe
Q 009882 129 KNAVVTVPAYFNDSQRQATKDAG-VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (523)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~A~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (523)
.-+++|-|..+....|+.+.+.. +.-+.+.+.+ .-.|..++++. .+=+|+|+|.|-+++.-+- ..
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~---------ttG~VvD~G~gvt~~vPI~---eG 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGR---------TTGLVVDSGDGVTHVVPIY---EG 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCC---------eeEEEEEcCCCceeeeecc---cc
Confidence 46899999999999999998764 3334444333 22333323332 2449999999977654433 22
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCc------------eeEEEE
Q 009882 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA------------QTTIEI 275 (523)
Q Consensus 208 ~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~------------~~~~~i 275 (523)
+.+........+||+++++.+...|.+ .+....... . +.-.+.+|+.++... ...+..
T Consensus 166 ~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~--~---~eIv~diKeklCyvald~~~e~~~~~~~~~l~~ 235 (372)
T KOG0676|consen 166 YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA--E---FEIVRDIKEKLCYVALDFEEEEETANTSSSLES 235 (372)
T ss_pred cccchhhheecccchhhHHHHHHHHHh-----ccccccccc--H---HHHHHHhHhhhcccccccchhhhcccccccccc
Confidence 333444556789999999977776655 121111110 1 112344444443321 011111
Q ss_pred ec-ccCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcC--CCCCCcceEEEecCccCcHHHHHHHHHh
Q 009882 276 DS-LYEGIDFYSTITRARFE---ELNMDLF-----RKCMEPVEKCLRDAK--MDKSTVHDVVLVGGSTRIPKVQQLLQDF 344 (523)
Q Consensus 276 ~~-~~~~~~~~~~itr~~~e---~~~~~~~-----~~~~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~v~~~l~~~ 344 (523)
.. +.+|.. +.+..+.|. -+++|-+ ..+.+.+-..+-++. +.+.-..+|+|+||++..|++.+++.+.
T Consensus 236 ~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kE 313 (372)
T KOG0676|consen 236 SYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKE 313 (372)
T ss_pred cccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHH
Confidence 10 112222 344443331 2222211 222333333333332 2223366899999999999999998886
Q ss_pred h
Q 009882 345 F 345 (523)
Q Consensus 345 f 345 (523)
.
T Consensus 314 l 314 (372)
T KOG0676|consen 314 L 314 (372)
T ss_pred H
Confidence 6
No 60
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.36 E-value=1.6e-05 Score=73.07 Aligned_cols=221 Identities=19% Similarity=0.235 Sum_probs=133.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCe
Q 009882 129 KNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (523)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~A-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (523)
.++.+|-|+.-....|+.|.+. .+..||..+.+.-...-+.++-++... +|+|-|.|-|-+.-+.- .
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG---------vVvDSGDGVTHi~PVye---~ 169 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG---------VVVDSGDGVTHIVPVYE---G 169 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce---------EEEecCCCeeEEeeeec---c
Confidence 4789999999999999998764 678899887776555555444444333 89999999888775531 1
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCc-----------eeEEEEe
Q 009882 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA-----------QTTIEID 276 (523)
Q Consensus 208 ~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~-----------~~~~~i~ 276 (523)
+..-.-.+...+.|+++++-|.+.+..+ .+..+-+.+ ....++.|+.|+.-. ++++-++
T Consensus 170 ~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~ 239 (389)
T KOG0677|consen 170 FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVE 239 (389)
T ss_pred eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeee
Confidence 2222223456799999999999888654 111211111 123444555553321 1222222
Q ss_pred c--ccCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCCC--cceEEEecCccCcHHHHHHHHHh
Q 009882 277 S--LYEGIDFYSTITRARFE---ELNMDLF-----RKCMEPVEKCLRDAKMDKST--VHDVVLVGGSTRIPKVQQLLQDF 344 (523)
Q Consensus 277 ~--~~~~~~~~~~itr~~~e---~~~~~~~-----~~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~ 344 (523)
+ +.+|.- +.+-.+.|| .+++|.+ ..+.+++-.+++.+.++... -++|+|.||++.-|.+-++|++.
T Consensus 240 ~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 240 SYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred eeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 1 223332 344555554 3455433 23456666777776654322 56899999999999998887765
Q ss_pred hC---------C---------cccccCCCCchhhHhHHHHHHHHHhC
Q 009882 345 FN---------G---------KELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 345 f~---------~---------~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
+. + ..+..+..-...|-.|.|.+|..+.+
T Consensus 318 lkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 318 LKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 41 1 11222333345788888888887764
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.21 E-value=7.7e-05 Score=70.93 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=102.0
Q ss_pred eechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhc
Q 009882 161 IINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKN 240 (523)
Q Consensus 161 li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 240 (523)
.++|-+|.|....+... +.-.|+|+||--+-+..+. .++.+.-......+.-|.-.|=+.+++.|.
T Consensus 80 ~vtEIt~ha~GA~~~~p------~~~tIiDIGGQD~K~I~~~-~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~------- 145 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP------EARAVLDIGALHGRAIRMD-ERGKVEAYKMTSQCASGSGQFLENIARYLG------- 145 (262)
T ss_pred CeeEEeHHHHHHHHHCC------CCCEEEEeCCCceEEEEEc-CCCcEeeEEecCcccccccHHHHHHHHHhC-------
Confidence 35788887765543322 2238999999877754442 234554444444455555555445554441
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 009882 241 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKS 320 (523)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~ 320 (523)
.+ +..|-..+.++++...-+..+.+..++-.-.. +.--.++ ++++..+...+...+...+++.+..
T Consensus 146 -i~-------leel~~~a~~~~~~~~iss~CtVFaeSevi~~-~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~-- 211 (262)
T TIGR02261 146 -IA-------QDEIGSLSQQADNPEKVSGICAVLAETDVINM-VSRGISA---PNILKGIHESMADRLAKLLKSLGAL-- 211 (262)
T ss_pred -CC-------HHHHHHHHhcCCCCCCcCCCceEEchhhHHHH-HHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 11 22233334455555444555555544311000 0011233 3445555555555555555544321
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcc----cccCCCCchhhHhHHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKE----LCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~----v~~~~~p~~aVa~Gaa~~a 368 (523)
-+.|+|+||.++.+.+.+.+++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 212 -~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 -DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred -CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1359999999999999999999885332 5556689999999999874
No 62
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.96 E-value=8.6e-05 Score=74.71 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=92.0
Q ss_pred ceeeeHHHHHHHHHHHHHHHHHHHhCCCCC-----cEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeeechhHHHHHhcc
Q 009882 100 EKQFAAEEISSMVLIKMREIAEAYLGSTIK-----NAVVTVPAYFNDSQRQAT-KDAGVIAGLNVMRIINEPTAAAIAYG 173 (523)
Q Consensus 100 ~~~~~~~~v~~~~l~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr~~l-~~A~~~aGl~~~~li~Ep~Aaa~~~~ 173 (523)
....+..++++.+-+-+.-...+.++.+.. .+|+-||-.|.....+.+ .-.....||....++.|..||.+..+
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345677778777666665555666665543 589999999998876555 45677889999999999999999887
Q ss_pred cccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 009882 174 LDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 233 (523)
Q Consensus 174 ~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 233 (523)
+.. -.|||+|+-+|.++.++-+ +.+..+.-....||+||++.|+-++.
T Consensus 274 lss---------~CVVdiGAQkTsIaCVEdG---vs~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 274 LSS---------ACVVDIGAQKTSIACVEDG---VSLPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred ccc---------eeEEEccCcceeEEEeecC---ccccCceEEeccCCchHHHHHHHHHH
Confidence 763 3899999999999999832 23333344457899999998876654
No 63
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.96 E-value=4.4e-05 Score=77.53 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=57.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---echhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCC
Q 009882 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRI---INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 206 (523)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~l---i~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (523)
-++||==+--.+.+|..+...+..||==++.- -.|..=|+-..+....+ ......++=+|+||||+.+++++-+.
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S-~~~~~~V~NiDIGGGTtN~avf~~G~- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS-KEHHTVVANIDIGGGTTNIAVFDNGE- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh-hhhCCeEEEEEeCCCceeEEEEECCE-
Confidence 35667666667778888888888887333222 14554444333222111 23567899999999999999998654
Q ss_pred eEEEEEecCCCCCchHHH
Q 009882 207 IFEVKATAGDTHLGGEDF 224 (523)
Q Consensus 207 ~~~v~~~~~~~~lGG~~i 224 (523)
+...+..++||+.|
T Consensus 165 ----v~~T~cl~IGGRLi 178 (473)
T PF06277_consen 165 ----VIDTACLDIGGRLI 178 (473)
T ss_pred ----EEEEEEEeeccEEE
Confidence 33344578999765
No 64
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.71 E-value=0.0083 Score=62.64 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=52.0
Q ss_pred EEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCC--c------------
Q 009882 286 STITRARFEELNMDL---FRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNG--K------------ 348 (523)
Q Consensus 286 ~~itr~~~e~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--~------------ 348 (523)
+.|.-.++++.+-.. +......+-+++.. .+.|-++|+|--+|+|.++..++...|- .
T Consensus 745 l~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~ 819 (1014)
T COG4457 745 LAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGT 819 (1014)
T ss_pred eeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccc
Confidence 455555665544333 22333333333332 2356799999999999999999887631 0
Q ss_pred -----ccccCCCCchhhHhHHHHHHHHHh
Q 009882 349 -----ELCKNINPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 349 -----~v~~~~~p~~aVa~Gaa~~a~~~~ 372 (523)
+..+..||....|.||.+++..+.
T Consensus 820 WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 820 WYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred eecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 122334899999999998876544
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.69 E-value=0.018 Score=56.12 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhh----CCcccccCCCCchhhHhHHHHHH
Q 009882 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF----NGKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 294 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f----~~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
.++++...+.+.+.+...+++...... .|+|+||..+...+++.+++.+ +..++..+..|....|.|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 345555566666666666666543322 2999999999977777664433 34455567789999999999986
No 66
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.30 E-value=0.0045 Score=63.13 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=51.5
Q ss_pred eeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHH-hhCCcccccCCCCchhhH
Q 009882 283 DFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQD-FFNGKELCKNINPDEAVA 361 (523)
Q Consensus 283 ~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~-~f~~~~v~~~~~p~~aVa 361 (523)
.-.+.||..+++++ +-.-..+..-++-+|++++++..+|++|+|.||+++---+.+.+.= .+|.....+..--..+.-
T Consensus 290 ~~~i~itq~DIr~~-qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al 368 (412)
T PF14574_consen 290 GDDIYITQKDIREF-QLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAAL 368 (412)
T ss_dssp SS-EEEEHHHHHHH-HHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHH
T ss_pred CCCEEEeHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHH
Confidence 34568999999774 3344556677888999999999999999999999998777776652 344332222222234666
Q ss_pred hHHHHH
Q 009882 362 YGAAVQ 367 (523)
Q Consensus 362 ~Gaa~~ 367 (523)
.||.+.
T Consensus 369 ~GA~~~ 374 (412)
T PF14574_consen 369 AGARMA 374 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 67
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.19 E-value=0.00088 Score=61.91 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHH
Q 009882 294 EELNMDLFRKCMEPVEKCLRDAKMD-KSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 294 e~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
.+++.-+++.+.-.+...++...-. ...++.|+++||.++++.+.+.+.+.| +.++....+ .++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 3444445555544444444433111 234889999999999999999999999 677766544 89999999999874
No 68
>PRK10854 exopolyphosphatase; Provisional
Probab=96.72 E-value=0.048 Score=58.13 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHhc-ccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchH
Q 009882 144 RQATKDAGVIAGLNVMRIINEPTAAAIAY-GLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 222 (523)
Q Consensus 144 r~~l~~A~~~aGl~~~~li~Ep~Aaa~~~-~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~ 222 (523)
...+.++-+..|+++ .+++..+=|.+.| +...... ..+..+|+|+|||+|.+++++-.. ..... ...+|..
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~--~~~~~lvvDIGGGStEl~~~~~~~--~~~~~---S~~lG~v 170 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP--EKGRKLVIDIGGGSTELVIGENFE--PILVE---SRRMGCV 170 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC--CCCCeEEEEeCCCeEEEEEecCCC--eeEeE---EEeccee
Confidence 444555666779987 4555544444444 4433321 235689999999999999987332 22222 2378887
Q ss_pred HHHHHHH
Q 009882 223 DFDNRMV 229 (523)
Q Consensus 223 ~id~~l~ 229 (523)
.+.+.+.
T Consensus 171 rl~e~f~ 177 (513)
T PRK10854 171 SFAQLYF 177 (513)
T ss_pred eHHhhhC
Confidence 7776543
No 69
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.60 E-value=0.035 Score=57.38 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHH
Q 009882 291 ARFEELNMDLFRKCM---EPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQ 367 (523)
Q Consensus 291 ~~~e~~~~~~~~~~~---~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~ 367 (523)
+.+-.+..-.+.-+. ..|-+++++.++ .|+.|+.+||..+.|.+.+.+.+.. +.++..+ ..+++++.|+|+.
T Consensus 401 ~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~ 475 (544)
T COG1069 401 ESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMF 475 (544)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHH
Confidence 333344444444443 345555555554 4899999999999999999999998 5666555 6688999999999
Q ss_pred HHHHhC
Q 009882 368 AAILSG 373 (523)
Q Consensus 368 a~~~~~ 373 (523)
|+.-.+
T Consensus 476 ~avAag 481 (544)
T COG1069 476 AAVAAG 481 (544)
T ss_pred HHHHhc
Confidence 886553
No 70
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.58 E-value=0.044 Score=52.67 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeechhHHHHHhcc---ccccc-CCCCCeEEEEEEeCCcceEEEEEEE
Q 009882 129 KNAVVTVPAYFNDS-QRQATKDAGVIAGLNVMRIINEPTAAAIAYG---LDKKA-TSVGEKNVLIFDLGGGTFDVSLLTI 203 (523)
Q Consensus 129 ~~~VitVPa~~~~~-qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~---~~~~~-~~~~~~~vlV~D~GggT~Dvsv~~~ 203 (523)
.++|+|=|.+--+. |.....-..+..+++.+ ..-+.|+..++. .+... ......+.+|+|-|.+-|-+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 47899999765544 44444445667777654 333444433332 22211 1244568999999999777654432
Q ss_pred eCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 009882 204 EEGIFEVKATAGDTHLGGEDFDNRMVNHFV 233 (523)
Q Consensus 204 ~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 233 (523)
+. ....+. ....+||..+++.|.+.+.
T Consensus 172 g~--~~~qaV-~RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GI--PYYQAV-KRIDVGGKALTNLLKETIS 198 (400)
T ss_pred Cc--chhhce-EEeecchHHHHHHHHHHhh
Confidence 22 111111 2367999999999988774
No 71
>PRK15027 xylulokinase; Provisional
Probab=96.55 E-value=0.0075 Score=64.03 Aligned_cols=52 Identities=33% Similarity=0.394 Sum_probs=44.8
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|+++||+++++.+.+.+.+.+ +.++....+.+++.|+|||++|+.-.|
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4788999999999999999999999 778866656777889999999986553
No 72
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.54 E-value=0.0078 Score=64.75 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHH
Q 009882 289 TRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 289 tr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
+|.++..++.-+++.+.-.+..+++...-....++.|.++||+++++.+.+.+.+.+ +.++....++ ++.|+|||+.|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHHHH
Confidence 455666666667766665555555443211234788999999999999999999999 7888776554 57899999999
Q ss_pred HHHhC
Q 009882 369 AILSG 373 (523)
Q Consensus 369 ~~~~~ 373 (523)
+.-.|
T Consensus 489 ~~~~G 493 (541)
T TIGR01315 489 AKAAG 493 (541)
T ss_pred HHhcC
Confidence 86553
No 73
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.49 E-value=0.75 Score=45.81 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hCCCCCcEEEEeCCCCCHH------------HHHHHHHHH-HHcCCceeeeechhHHHH
Q 009882 105 AEEISSMVLIKMREIAEAY--LGSTIKNAVVTVPAYFNDS------------QRQATKDAG-VIAGLNVMRIINEPTAAA 169 (523)
Q Consensus 105 ~~~v~~~~l~~l~~~a~~~--~~~~~~~~VitVPa~~~~~------------qr~~l~~A~-~~aGl~~~~li~Ep~Aaa 169 (523)
+++++..+.+.+.+..++. ...++..+.|++|...+.. +...+++.. +..|++ +.+.++..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 3444444444444433322 1124556677777644321 111233322 344665 67899999998
Q ss_pred HhcccccccCCCCCeEEEEEEeCCcceEEEEE
Q 009882 170 IAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 201 (523)
Q Consensus 170 ~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 201 (523)
++-..... ....++++++.+|.|- -.+++
T Consensus 112 laE~~~g~--~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGA--GKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcc--cCCCCcEEEEEeCCcc-EEEEE
Confidence 86433211 1234678999999875 55555
No 74
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.48 E-value=0.042 Score=53.15 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCcceEEEecC-ccCcHHHHHHHHHhh--CCcccccCCCCchhhHhHHHH
Q 009882 320 STVHDVVLVGG-STRIPKVQQLLQDFF--NGKELCKNINPDEAVAYGAAV 366 (523)
Q Consensus 320 ~~i~~ViLvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~aVa~Gaa~ 366 (523)
..++.|+++|| .+..|.+++.+...+ -+.+...+.++...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34789999999 778999999998765 246678888999999999986
No 75
>PLN02669 xylulokinase
Probab=96.45 E-value=0.011 Score=63.73 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHH
Q 009882 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 4445555544444444444322 35789999999999999999999999 5677766555 6889999999875
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.23 E-value=0.041 Score=53.08 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=52.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---echhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCC
Q 009882 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRI---INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 206 (523)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~l---i~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (523)
.++||=-..-....|..+......||==++.- -.|+.-|.-..+.... +.++...++=+|+||||+..+++..++
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~-Seqr~t~v~NlDIGGGTtN~slFD~Gk- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTL-SEQRLTRVLNLDIGGGTTNYSLFDAGK- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccch-hhhhceEEEEEeccCCccceeeecccc-
Confidence 35566666666667777766666666322221 1333333322221111 123456789999999999999998665
Q ss_pred eEEEEEecCCCCCchHHH
Q 009882 207 IFEVKATAGDTHLGGEDF 224 (523)
Q Consensus 207 ~~~v~~~~~~~~lGG~~i 224 (523)
+......++||+-+
T Consensus 167 ----v~dTaCLdiGGRLi 180 (473)
T COG4819 167 ----VSDTACLDIGGRLI 180 (473)
T ss_pred ----cccceeeecCcEEE
Confidence 33344567888755
No 77
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.03 E-value=0.028 Score=59.31 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=43.3
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.| +.++....++ ++.++|||+.|+.-.|
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 4788999999999999999999999 6888766554 6789999999986553
No 78
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.055 Score=56.74 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCC---HHHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCC
Q 009882 107 EISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFN---DSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE 183 (523)
Q Consensus 107 ~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~---~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~ 183 (523)
+.....+..|+..++...+..+.++ ..|=.... ...-+.+..+-+..|++.-.+=-|-+|-..+.+....... .
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~--~ 128 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR--K 128 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC--C
Confidence 3444445555554444444444442 22222221 1234566778888899876555666665555554443222 5
Q ss_pred eEEEEEEeCCcceEEEEEEE
Q 009882 184 KNVLIFDLGGGTFDVSLLTI 203 (523)
Q Consensus 184 ~~vlV~D~GggT~Dvsv~~~ 203 (523)
...+|+|+|||+|.+++..-
T Consensus 129 ~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CCEEEEEecCCeEEEEEecC
Confidence 67899999999999999873
No 79
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.99 E-value=0.013 Score=57.57 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHH
Q 009882 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (523)
Q Consensus 295 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~ 366 (523)
.+++-..+++.+.|++.....+..+.+. .++.+||.+ |++...+.+.++-..+..+..|.-+.|.||++
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344445555556665544445444332 355566666 56888888888544566666778899999985
No 80
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.99 E-value=0.021 Score=60.83 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=43.1
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcC
Confidence 4788999999999999999999999 67786654 456889999999886553
No 81
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.95 E-value=0.025 Score=60.05 Aligned_cols=51 Identities=33% Similarity=0.529 Sum_probs=43.7
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|+++||+++++.+.+.+.+.+ +.++.... ..++.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 67776654 566889999999987654
No 82
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.94 E-value=0.012 Score=49.51 Aligned_cols=48 Identities=13% Similarity=0.271 Sum_probs=27.7
Q ss_pred EEEEEeCCcceEEEEEEEeC-CeEEEEEecCCC--CCchHHHH--HHHHHHHH
Q 009882 186 VLIFDLGGGTFDVSLLTIEE-GIFEVKATAGDT--HLGGEDFD--NRMVNHFV 233 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~-~~~~v~~~~~~~--~lGG~~id--~~l~~~l~ 233 (523)
++++|+|++++.+.+++... +.++++...... .+=|..+. +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 57999999999999999733 344444332111 12277777 66665553
No 83
>PRK04123 ribulokinase; Provisional
Probab=95.93 E-value=0.021 Score=61.65 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=43.0
Q ss_pred CcceEEEecCc-cCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+ ++++.+.+.+.+.| +.+|.... +.++.|+|||+.|+.-.|
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEecC-ccccchHHHHHHHHHHhc
Confidence 47889999999 99999999999999 67775554 567889999999986553
No 84
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.88 E-value=0.047 Score=57.94 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchH
Q 009882 143 QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 222 (523)
Q Consensus 143 qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~ 222 (523)
....+.++-+..|+++..+=.|-+|-..+.+..... ...+..+|+|+|||+|.+++++-.. .....+..+|.-
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~~~-----~~~~~Sl~lG~v 165 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTT--GGADQRLVVDIGGASTELVTGTGAQ-----ATSLFSLSMGCV 165 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhcc--CCCCCEEEEEecCCeeeEEEecCCc-----eeeeeEEeccch
Confidence 344556666778999754444444544433443332 1234589999999999999986332 223345678988
Q ss_pred HHHHHHH
Q 009882 223 DFDNRMV 229 (523)
Q Consensus 223 ~id~~l~ 229 (523)
.+.+.+.
T Consensus 166 rl~e~f~ 172 (496)
T PRK11031 166 TWLERYF 172 (496)
T ss_pred HHHHHhc
Confidence 7766654
No 85
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.87 E-value=0.028 Score=60.01 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=43.1
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.|
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 3788999999999999999999999 77776655 455789999999986554
No 86
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.86 E-value=0.023 Score=60.46 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=43.1
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+++.+.| +.++....+ .++.|+|||+.|+.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~-~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKV-TETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEecCC-CcchHHHHHHHHHhhcC
Confidence 4789999999999999999999999 677766544 56889999999886554
No 87
>PRK10331 L-fuculokinase; Provisional
Probab=95.82 E-value=0.026 Score=59.64 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=43.2
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.+ +.++..... .++.++|||+.|+.-.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 677766554 56889999999986553
No 88
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.81 E-value=0.03 Score=60.24 Aligned_cols=51 Identities=31% Similarity=0.469 Sum_probs=43.5
Q ss_pred CcceEEEecCc-cCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|+++||+ ++++.+.+.+.+.| +.+|....+ .++.|+|||+.|+.-.|
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 47899999999 99999999999999 688876655 46789999999986554
No 89
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.72 E-value=0.13 Score=52.91 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=72.4
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCC----CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHhccccccc
Q 009882 104 AAEEISSMVLIKMREIAEAYLGST----IKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKA 178 (523)
Q Consensus 104 ~~~~v~~~~l~~l~~~a~~~~~~~----~~~~VitVPa~~~~~qr~~l~~-A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~ 178 (523)
+.-++...+|.|+.. ++|.. ..-+++|=+..-...+|+.|-+ ..+..|++.+.+=-... +++.++..
T Consensus 92 tNwel~E~ilDY~F~----~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~~- 163 (645)
T KOG0681|consen 92 TNWELMEQILDYIFG----KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNYG- 163 (645)
T ss_pred ccHHHHHHHHHHHHH----hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhccC-
Confidence 333455555555444 23322 2357888888777788888876 46778988765532222 12222211
Q ss_pred CCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 009882 179 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 235 (523)
Q Consensus 179 ~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 235 (523)
...+..-||+++|..+|-|-.+.-+. . ++....-.++||.....-|.+.+..+
T Consensus 164 -~~~~~~~liis~g~~~T~vipvldG~--~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 164 -KSSNKSGLIISMGHSATHVIPVLDGR--L-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred -cccCcceEEEecCCCcceeEEEecCc--h-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 12333679999999999888776333 2 23334457899988877777766654
No 90
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.042 Score=57.15 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCC-CCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 298 MDLFRKCMEPVEKCLRDAKMDK-STVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 298 ~~~~~~~~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.-.++.+.-..+..|+...... ..|+.+.+.||.|+.|.+.+.+++.+ +.++..+.+.+. ++.|||+.|+..++
T Consensus 390 ~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 390 RAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcC
Confidence 3444444444444444333222 46888999999999999999999999 688888888877 99999999998774
No 91
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.63 E-value=0.037 Score=59.10 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=43.5
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.| +.++....++ ++.++|||+.|+.-.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 4789999999999999999999999 6778766554 5889999999986553
No 92
>PLN02295 glycerol kinase
Probab=95.49 E-value=0.067 Score=57.23 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=42.9
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHHHHhhcC
Confidence 4788999999999999999999999 67776554 457889999999876553
No 93
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.46 E-value=0.039 Score=58.06 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=42.3
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++++.+.+.+.+ +.++... +.++.|+|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999 6777543 367889999999986554
No 94
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.32 E-value=0.052 Score=58.21 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=43.3
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.+ +.++....++ ++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 7788766544 5779999999886554
No 95
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.21 E-value=0.09 Score=55.56 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=42.0
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.++.|.++||+++++.+.+.+.+.+ +.++.... .++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 67775532 37889999999886554
No 96
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=94.73 E-value=0.64 Score=46.01 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCcceEEEecCccCcHHHHHHHHHhhCCc---ccccCCCC----chhhHhHHHHHHHHHhCC
Q 009882 320 STVHDVVLVGGSTRIPKVQQLLQDFFNGK---ELCKNINP----DEAVAYGAAVQAAILSGE 374 (523)
Q Consensus 320 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---~v~~~~~p----~~aVa~Gaa~~a~~~~~~ 374 (523)
.+.+.|+|+|-.+++|-+++.+++.|.+. ++. ...+ -...|.|||+.|.-+.|.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 45788999999999999998888877321 121 1122 134899999999887763
No 97
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.69 E-value=0.17 Score=53.96 Aligned_cols=80 Identities=24% Similarity=0.234 Sum_probs=49.2
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHH
Q 009882 288 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQ 367 (523)
Q Consensus 288 itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~ 367 (523)
-++.+|-+.+-+-+.-.....-+.|.+.. ...++.|.++||++++++.++++.+.+ +.++..+...+.+.+-||++.
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~~--g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~ 446 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEELG--GKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALA 446 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHH
Confidence 35555544433333333333334454441 234678999999999999999999999 677776544444445555544
Q ss_pred HHH
Q 009882 368 AAI 370 (523)
Q Consensus 368 a~~ 370 (523)
+..
T Consensus 447 ~~~ 449 (502)
T COG1070 447 AAA 449 (502)
T ss_pred HHH
Confidence 443
No 98
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.15 Score=51.60 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=45.9
Q ss_pred HcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHH
Q 009882 314 DAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 314 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
..+........|+.+||.|+...|-+.|.+.| +.++... +..++.|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34566667889999999999999999999999 6777655 7778999999998763
No 99
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=94.35 E-value=0.072 Score=52.29 Aligned_cols=75 Identities=21% Similarity=0.350 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCceeeeechhHHHHHhc-ccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 009882 146 ATKDAGVIAGLNVMRIINEPTAAAIAY-GLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 224 (523)
Q Consensus 146 ~l~~A~~~aGl~~~~li~Ep~Aaa~~~-~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~i 224 (523)
.+.+.-+..|++.. +++..+=|.+.| +..... ......+|+|+|||+|.++.++-. . .....+.++|...+
T Consensus 76 ~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~~--~---~~~~~Sl~lG~vrl 147 (285)
T PF02541_consen 76 FLDRIKKETGIDIE-IISGEEEARLSFLGVLSSL--PPDKNGLVIDIGGGSTELILFENG--K---VVFSQSLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHS--TTTSSEEEEEEESSEEEEEEEETT--E---EEEEEEES--HHHH
T ss_pred HHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhc--cccCCEEEEEECCCceEEEEEECC--e---eeEeeeeehHHHHH
Confidence 34555566799864 455444444433 322221 244578999999999999998732 2 22233467888877
Q ss_pred HHHH
Q 009882 225 DNRM 228 (523)
Q Consensus 225 d~~l 228 (523)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 100
>PRK09557 fructokinase; Reviewed
Probab=94.24 E-value=6.1 Score=38.92 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=30.5
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhC--------CcccccCCCCchhhHhHHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--------GKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--------~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
+++.|+|-||.++.+.+.+.+++.+. ..++..+.-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 46788888888877666655555441 1223344445678899998753
No 101
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.18 E-value=0.052 Score=55.77 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCCCC--cceEEEecCccCcHHHHHHHHHhhC-------CcccccCCCCchhhHhHHHHHHHH
Q 009882 304 CMEPVEKCLRDAKMDKST--VHDVVLVGGSTRIPKVQQLLQDFFN-------GKELCKNINPDEAVAYGAAVQAAI 370 (523)
Q Consensus 304 ~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~-------~~~v~~~~~p~~aVa~Gaa~~a~~ 370 (523)
+.+.+...|.+....... +++|+|+||+|.+|++.++|...+- ...|....||-...=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 345555556554332222 8899999999999999999998762 346777889999999999998875
No 102
>PRK09698 D-allose kinase; Provisional
Probab=93.07 E-value=9.8 Score=37.46 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=32.0
Q ss_pred CcceEEEecCccCc-----HHHHHHHHHhhC------CcccccCCCCchhhHhHHHHHHH
Q 009882 321 TVHDVVLVGGSTRI-----PKVQQLLQDFFN------GKELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 321 ~i~~ViLvGG~s~~-----p~v~~~l~~~f~------~~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
+++.|+|-||.+.. +.+++.++++.. ..++......+.+.++|||..+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 46788888887764 345566665431 12344555667889999998764
No 103
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=92.65 E-value=0.48 Score=47.83 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccC----CCCchhhHhHHHHHHH
Q 009882 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKN----INPDEAVAYGAAVQAA 369 (523)
Q Consensus 294 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~----~~p~~aVa~Gaa~~a~ 369 (523)
++++.-+.+-+.+.|.+.+++... +++.|+++||+++.|++.+.|++.+++.++... .+|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 444555555556666666666542 278999999999999999999999987555332 3555555566677776
Q ss_pred HHh
Q 009882 370 ILS 372 (523)
Q Consensus 370 ~~~ 372 (523)
...
T Consensus 337 ~~~ 339 (364)
T PF03702_consen 337 RRL 339 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 104
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=92.62 E-value=0.46 Score=46.96 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeeechhHHHHHhc-ccccccCCCCCeEE
Q 009882 109 SSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQAT-KDAGVIAGLNVMRIINEPTAAAIAY-GLDKKATSVGEKNV 186 (523)
Q Consensus 109 ~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l-~~A~~~aGl~~~~li~Ep~Aaa~~~-~~~~~~~~~~~~~v 186 (523)
+...|+..++.++.+ +..-.. +++--+.=....++.+ .+.-+..|++. .+++..+=|.+.| +..... .. ...
T Consensus 54 ~~~~l~~f~~~~~~~-~v~~i~-~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~--~~-~~~ 127 (300)
T TIGR03706 54 ALEALKRFAELLRGF-PVDEVR-AVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTL--PI-ADG 127 (300)
T ss_pred HHHHHHHHHHHHHhC-CCCeEE-EEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCC--CC-CCc
Confidence 344555666665543 332112 2232222222233344 44445679986 5666666555555 222221 11 124
Q ss_pred EEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 009882 187 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 227 (523)
Q Consensus 187 lV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 227 (523)
+++|+|||+|.++.+.-+. .....+.++|...+.+.
T Consensus 128 ~v~DiGGGSte~~~~~~~~-----~~~~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 128 LVVDIGGGSTELILGKDFE-----PGEGVSLPLGCVRLTEQ 163 (300)
T ss_pred EEEEecCCeEEEEEecCCC-----EeEEEEEccceEEhHHh
Confidence 9999999999999886332 22223356666655554
No 105
>PTZ00288 glucokinase 1; Provisional
Probab=92.62 E-value=8.1 Score=39.77 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=16.7
Q ss_pred cCCceeeeechhHHHHHhc
Q 009882 154 AGLNVMRIINEPTAAAIAY 172 (523)
Q Consensus 154 aGl~~~~li~Ep~Aaa~~~ 172 (523)
.|++.+.+||+=+|.|++.
T Consensus 128 ~~~~~~~liNDfeA~aygi 146 (405)
T PTZ00288 128 FPPGRSALLNDLEAGAYGV 146 (405)
T ss_pred cCCCeEEEEEhHHHHhCcc
Confidence 6888999999999998765
No 106
>PRK03011 butyrate kinase; Provisional
Probab=92.32 E-value=4.2 Score=41.18 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=37.2
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhC---CcccccCCCCchhhHhHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKNINPDEAVAYGAAVQ 367 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~---~~~v~~~~~p~~aVa~Gaa~~ 367 (523)
++|.|+|.||.+..+.+++.|++.+. ...+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 58899999999999999999988763 344555556678999998743
No 107
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=91.69 E-value=17 Score=36.95 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=55.7
Q ss_pred EEcHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCcce-EEEecCccCcHHHHHHHHHhhCCccccc-CCCCchhhHhH
Q 009882 287 TITRARFEELNMDLFRKCM-EPVEKCLRDAKMDKSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCK-NINPDEAVAYG 363 (523)
Q Consensus 287 ~itr~~~e~~~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~-~~~p~~aVa~G 363 (523)
.-.+.++...++..+++++ ..++.++++.+ ++. +.|.||.+..-..-..|.+..+-.++.. +.-.|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4566777777777777664 45666666665 445 9999999999999999998743334444 34557789999
Q ss_pred HHHHHHHHh
Q 009882 364 AAVQAAILS 372 (523)
Q Consensus 364 aa~~a~~~~ 372 (523)
||+++....
T Consensus 207 aA~~~~~~~ 215 (360)
T PF02543_consen 207 AALYAWHEL 215 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988654
No 108
>PLN02920 pantothenate kinase 1
Probab=91.19 E-value=5.5 Score=40.30 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=36.6
Q ss_pred CCcceEEEecCccCcH-HHHHHHHH---hh--CCcccccCCCCchhhHhHHHHHH
Q 009882 320 STVHDVVLVGGSTRIP-KVQQLLQD---FF--NGKELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 320 ~~i~~ViLvGG~s~~p-~v~~~l~~---~f--~~~~v~~~~~p~~aVa~Gaa~~a 368 (523)
.+++.|+++|.+.+.+ ..++.|.- ++ ++.+.....+....-|+||++..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4588999999999998 66664443 22 34566777788899999998753
No 109
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=90.97 E-value=1.3 Score=40.32 Aligned_cols=30 Identities=40% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHh
Q 009882 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIA 171 (523)
Q Consensus 142 ~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~ 171 (523)
...+.+.++++.+|+++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788899999999999999999998754
No 110
>PRK14878 UGMP family protein; Provisional
Probab=90.94 E-value=4.6 Score=40.37 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.6
Q ss_pred CcceEEEecCccCcHHHHHHHHHhh
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFF 345 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f 345 (523)
.++.|+|+||.+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999876
No 111
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=90.87 E-value=6.2 Score=38.55 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=56.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeeee---chhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCC
Q 009882 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRII---NEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 206 (523)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~li---~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (523)
...+|-|.--.++.|+-+.+..-.. +++..+. ..-.|.|..|....- .+..-.=+|+|-|.|-+-+..+. .
T Consensus 108 ~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v--~er~ltG~VidsGdgvThvipva---E 181 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQV--GERFLTGIVIDSGDGVTHVIPVA---E 181 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhh--hhheeeeEEEecCCCeeEEEEee---c
Confidence 5688999999999999888764322 3332221 112222223321111 11122347999999988777664 2
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHH
Q 009882 207 IFEVKATAGDTHLGGEDFDNRMVNHF 232 (523)
Q Consensus 207 ~~~v~~~~~~~~lGG~~id~~l~~~l 232 (523)
.+-+.+.-.+..+.|++++.-+...+
T Consensus 182 gyVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 182 GYVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred ceEEeeeeccccccCCchhHHHHHHh
Confidence 23333435667899999997665555
No 112
>PLN02666 5-oxoprolinase
Probab=90.81 E-value=1.9 Score=50.64 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=48.2
Q ss_pred EcHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHH
Q 009882 288 ITRARFEELNMDLFR-KCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (523)
Q Consensus 288 itr~~~e~~~~~~~~-~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~ 366 (523)
++-++..+-+..+.+ ...+.|.......+.++.+ -.++..||.+ |...-.|.+.++-..+..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 445555444444433 3345566665566665544 2344455544 66888899999544588888999999999985
No 113
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=3.2 Score=38.29 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCc-ccccCCCCchhhHhHHHHH
Q 009882 300 LFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK-ELCKNINPDEAVAYGAAVQ 367 (523)
Q Consensus 300 ~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v~~~~~p~~aVa~Gaa~~ 367 (523)
++.-+.+.-++++..++ -+.|++|||-.+.-.+|+++....... -.....|-..++-.|+.+.
T Consensus 238 vFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA 301 (336)
T KOG2708|consen 238 VFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIA 301 (336)
T ss_pred HHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHH
Confidence 34444455555655544 457999999999999999998876321 1223335566777776653
No 114
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=4.8 Score=39.86 Aligned_cols=53 Identities=17% Similarity=0.452 Sum_probs=37.1
Q ss_pred EcHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhh
Q 009882 288 ITRARFEELNMDL----FRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF 345 (523)
Q Consensus 288 itr~~~e~~~~~~----~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 345 (523)
+..++.++++..+ ++-+.+..+++++..+ .+.++++||-+....+|+++++..
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3344555555544 4444555666666554 567999999999999999999866
No 115
>PRK09604 UGMP family protein; Validated
Probab=89.98 E-value=23 Score=35.55 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=37.3
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhC--CcccccCC---CCchhhHhHHHHHHHHHh
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~Gaa~~a~~~~ 372 (523)
.++.|+|+||.+...++++.|.+.+. +.++..+. -.|.++++|+|=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 47789999999999999999998873 23444332 346788888885443333
No 116
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=89.64 E-value=1.7 Score=43.88 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccC----CCCchhhHhHHHHHHHHH
Q 009882 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKN----INPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 296 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~----~~p~~aVa~Gaa~~a~~~ 371 (523)
++.-+.+-+...|.+.++... ...+.|+++||+++.|++.++|++.++ .++... .+|+.-=|..-|++|...
T Consensus 264 ~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 264 VQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 333444445555666665443 224689999999999999999999996 333322 355555556666776543
No 117
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.80 E-value=0.22 Score=41.85 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcC---Cceee---------eechh-HHHHHh
Q 009882 108 ISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAG---LNVMR---------IINEP-TAAAIA 171 (523)
Q Consensus 108 v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aG---l~~~~---------li~Ep-~Aaa~~ 171 (523)
-++.-++...+.||+..+.++..+.+++ ...+.+.+.++++.++ ++.-. ++..| .|+|++
T Consensus 47 ~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 47 DISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3444555555566665555555556555 4455666777777777 66666 78888 888765
No 118
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=87.97 E-value=2 Score=44.17 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HcCCCCCCcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHH
Q 009882 296 LNMDLFRKCMEPVEKCLR----DAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (523)
Q Consensus 296 ~~~~~~~~~~~~i~~~l~----~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~ 371 (523)
+++..++.+.-...++++ +++. +++.+-+=||.+++.++.+...+.+ +.+|.++.+ .|.-|+|||+.|..-
T Consensus 376 i~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla 450 (499)
T COG0554 376 IARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLA 450 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhh
Confidence 344444444443334333 3333 5788889999999999999999999 678887754 678899999999876
Q ss_pred hC
Q 009882 372 SG 373 (523)
Q Consensus 372 ~~ 373 (523)
.|
T Consensus 451 ~G 452 (499)
T COG0554 451 VG 452 (499)
T ss_pred hC
Confidence 64
No 119
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=4.9 Score=40.06 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCCcceEEEecCccCcHHHHHHHHHhhCCccccc----CCCCchhhHhHHHHHHHHHh
Q 009882 318 DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----NINPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 318 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~----~~~p~~aVa~Gaa~~a~~~~ 372 (523)
-....+..+++||+.+.|++.+.|...+++..|.. ..+++..=|.+-|++|...-
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 34567899999999999999999999997755543 34677777788888877653
No 120
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=87.60 E-value=1.9 Score=40.59 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEe
Q 009882 113 LIKMREIAEAYLGSTIKNAVVTVPAYFNDS-QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDL 191 (523)
Q Consensus 113 l~~l~~~a~~~~~~~~~~~VitVPa~~~~~-qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~ 191 (523)
.+.+++..+...+.++ .++++-..|... ..+..++.+. |+. +|.-.+.. . ...+..+++|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW----------~Ata~~~~-e----~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW----------VATARFLA-E----EIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh----------HHHHHHHH-H----hcCCceEEEec
Confidence 3556666677666664 678888777664 2222333211 110 11111111 1 13456899999
Q ss_pred CCcceEEEEEEE
Q 009882 192 GGGTFDVSLLTI 203 (523)
Q Consensus 192 GggT~Dvsv~~~ 203 (523)
|+.|+|+.-+.-
T Consensus 138 GSTTtDIIPi~~ 149 (330)
T COG1548 138 GSTTTDIIPIKD 149 (330)
T ss_pred CCcccceEeecc
Confidence 999999987764
No 121
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=87.22 E-value=35 Score=34.31 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=60.1
Q ss_pred eeHHHHHHHHHHHHHHHHHHH---hC---CCCCcEEEEe-CCCCCHHHH--HHHHHHHHHcCCceeeeechhHHHHHhcc
Q 009882 103 FAAEEISSMVLIKMREIAEAY---LG---STIKNAVVTV-PAYFNDSQR--QATKDAGVIAGLNVMRIINEPTAAAIAYG 173 (523)
Q Consensus 103 ~~~~~v~~~~l~~l~~~a~~~---~~---~~~~~~VitV-Pa~~~~~qr--~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~ 173 (523)
+-|++....-.+.|....++. .+ ..++.+.+|. |-.|+...- ..-+..+...|++. .-++.-+|-++.-.
T Consensus 40 vvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~ 118 (345)
T PTZ00340 40 FLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGR 118 (345)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHh
Confidence 455566555555554443333 22 2355666666 444443321 12233444445543 34555555554433
Q ss_pred cccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 009882 174 LDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 226 (523)
Q Consensus 174 ~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 226 (523)
+... ...+ |++=+=||+|.+.. ...+.+++++..-|. --|+.||+
T Consensus 119 l~~~--~~~P---l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dd-a~Gea~DK 163 (345)
T PTZ00340 119 LVTG--AENP---VVLYVSGGNTQVIA--YSEHRYRIFGETIDI-AVGNCLDR 163 (345)
T ss_pred hccC--CCCC---eEEEEeCCceEEEE--ecCCeEEEEEeeccc-chhHHHHH
Confidence 3221 1122 66666777888775 445778999887764 45666764
No 122
>PRK13318 pantothenate kinase; Reviewed
Probab=87.19 E-value=4.4 Score=39.02 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=14.6
Q ss_pred EEEEEccccceEEEEE
Q 009882 9 AIGIDLGTTYSCVGVW 24 (523)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (523)
+++||+|.|+++++++
T Consensus 2 iL~IDIGnT~iK~al~ 17 (258)
T PRK13318 2 LLAIDVGNTNTVFGLY 17 (258)
T ss_pred EEEEEECCCcEEEEEE
Confidence 6999999999998876
No 123
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=86.24 E-value=59 Score=35.91 Aligned_cols=72 Identities=7% Similarity=0.045 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc--HHHHH-HHHHhhC----------CcccccCCCCchhhHhH
Q 009882 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI--PKVQQ-LLQDFFN----------GKELCKNINPDEAVAYG 363 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~--p~v~~-~l~~~f~----------~~~v~~~~~p~~aVa~G 363 (523)
+...++.+...+-..+...-....+.+.|+|.||-+.- +++.+ .+.+.|. +.++....+ +.+.-.|
T Consensus 245 A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~-~~~~l~G 323 (638)
T PRK14101 245 ALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITA-EYPAFLG 323 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeC-CChhHHH
Confidence 33455555555555554432222336789999998733 55553 5666662 223433334 3455677
Q ss_pred HHHHHH
Q 009882 364 AAVQAA 369 (523)
Q Consensus 364 aa~~a~ 369 (523)
||.++.
T Consensus 324 aa~~~~ 329 (638)
T PRK14101 324 VSAILA 329 (638)
T ss_pred HHHHHH
Confidence 755443
No 124
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=85.10 E-value=59 Score=34.96 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=38.0
Q ss_pred CcceEEEecCccCcHHHHHHHHHhh--CCcccccCC---CCchhhHhHHHHHHHHHh
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFF--NGKELCKNI---NPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f--~~~~v~~~~---~p~~aVa~Gaa~~a~~~~ 372 (523)
.++.|+|+||.+...++++.|.+.+ .+.++..+. -.|.+++.|++.+.....
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3678999999999999999999665 233444433 356889999887655444
No 125
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=85.02 E-value=9.1 Score=36.37 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=57.7
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEE
Q 009882 125 GSTIKNAVV--TVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 202 (523)
Q Consensus 125 ~~~~~~~Vi--tVPa~~~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 202 (523)
+..+..++. .+|.+|+.- +++++.+...|.+. .+.+--.||.+....+.. ....+.++++|+|=|.|=..++.
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~--v~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE--VSSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChh--hhccCCeEEEEeCCccEEEEEEe
Confidence 555667777 788886543 45555555566555 455555555555544333 13456799999999988888873
Q ss_pred EeCCeEEEEEecCCCCCchHHHHHH
Q 009882 203 IEEGIFEVKATAGDTHLGGEDFDNR 227 (523)
Q Consensus 203 ~~~~~~~v~~~~~~~~lGG~~id~~ 227 (523)
++++.=+.......+-...+...
T Consensus 186 --~~rI~GvfEHHT~~l~~~kL~~~ 208 (254)
T PF08735_consen 186 --DGRIYGVFEHHTGMLTPEKLEEY 208 (254)
T ss_pred --CCEEEEEEecccCCCCHHHHHHH
Confidence 44444344444445555544433
No 126
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=84.84 E-value=19 Score=35.69 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.8
Q ss_pred CcceEEEecCccCcHHHHHHHHHhh
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFF 345 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f 345 (523)
.++.|+|+||.+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4778999999999999999999876
No 127
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=84.66 E-value=4.8 Score=39.11 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=38.9
Q ss_pred cceEEEecC--ccCcH-HHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 322 VHDVVLVGG--STRIP-KVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 322 i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
...|+|+|- +++.| .+++.|++++. .++..- .. ...|+|+|+.|.-+.+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V~~L-~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLS-CKVLVL-DS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhC-CCeEEe-cc-hhhhhhHHHHHHHHhC
Confidence 348999988 99999 99999999994 444332 32 7889999999987764
No 128
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=83.43 E-value=58 Score=33.50 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCC--ceeeeechhHHHHHhcccccccC-----------------------CC----CCeEEEEEEeCCc
Q 009882 144 RQATKDAGVIAGL--NVMRIINEPTAAAIAYGLDKKAT-----------------------SV----GEKNVLIFDLGGG 194 (523)
Q Consensus 144 r~~l~~A~~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~-----------------------~~----~~~~vlV~D~Ggg 194 (523)
-+.+.++.+.-++ +++.++++.+++.++-......+ .. ....=+++.+=.|
T Consensus 184 v~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwG 263 (466)
T COG5026 184 VRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWG 263 (466)
T ss_pred HHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEeccc
Confidence 4556667666666 46788999999877532211100 00 0111167777777
Q ss_pred ceEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 009882 195 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 227 (523)
Q Consensus 195 T~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 227 (523)
.||.-...+...++.++.......-|=..|+.+
T Consensus 264 sfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~ 296 (466)
T COG5026 264 SFDNELSVLPRTKYDVLIDQESPNPGHQIFEKM 296 (466)
T ss_pred ccCcceeeccccceeeeeccCCCCcchHHHhhh
Confidence 788544444445566665554454444444443
No 129
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=82.20 E-value=3.1 Score=46.15 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=37.4
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhC--CcccccCC---CCchhhHhHHHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAAVQAA 369 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~Gaa~~a~ 369 (523)
.++.|+|+||.++..++++.+.+.+. +.++..+. -.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 47789999999999999999998774 23443332 347789999988763
No 130
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=82.00 E-value=49 Score=31.62 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc
Q 009882 290 RARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI 334 (523)
Q Consensus 290 r~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 334 (523)
++..+.+...++......|+..+++.+.....-..++++||.+++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh
Confidence 345566666777777777777776654332234689999998875
No 131
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.86 E-value=1.6 Score=47.73 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=28.4
Q ss_pred eeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEE
Q 009882 159 MRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 202 (523)
Q Consensus 159 ~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 202 (523)
..+.+-|.|..++..+.... ..+ +++++|+||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~--~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGL--KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhccc--ccC-CEEEEEcCCcceeeeeee
Confidence 34667787776655433111 122 599999999999999987
No 132
>PRK00976 hypothetical protein; Provisional
Probab=80.61 E-value=11 Score=37.37 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=38.6
Q ss_pred CcceEEEecCccCcH--HHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHhC
Q 009882 321 TVHDVVLVGGSTRIP--KVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p--~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
+++.|+|-||.|+.+ .+.+.+++.+.. . ...-...+.++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhC
Confidence 477899999999998 789999988733 2 2233458999999999877643
No 133
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=79.25 E-value=13 Score=37.37 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=34.8
Q ss_pred CcceEEEecCccCc-HHHHHHHH---Hhh--CCcccccCCCCchhhHhHHHHH
Q 009882 321 TVHDVVLVGGSTRI-PKVQQLLQ---DFF--NGKELCKNINPDEAVAYGAAVQ 367 (523)
Q Consensus 321 ~i~~ViLvGG~s~~-p~v~~~l~---~~f--~~~~v~~~~~p~~aVa~Gaa~~ 367 (523)
.++.|+++|.+-+. |...+.|. +++ +..+.....+...+-|.||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 47899999998865 77788887 555 3456667779999999999874
No 134
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=77.75 E-value=78 Score=31.44 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=32.9
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhC--CcccccCC---CCchhhHhHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAA 365 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~Gaa 365 (523)
.++.|+|+||.+...++++.|.+... +.++..+. -.|.++++|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 46789999999999999999998872 22333322 24667777776
No 135
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=77.34 E-value=8.7 Score=27.63 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.6
Q ss_pred HHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009882 119 IAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (523)
Q Consensus 119 ~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~ 158 (523)
..+.+.... ...++.|+.++..+|..+.+.|+..||..
T Consensus 7 ~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 7 ALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 344454444 56889999999999999999999999865
No 136
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=73.85 E-value=1e+02 Score=30.77 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=30.2
Q ss_pred cceEEEecCccCcHHHHHHHHHhhC--CcccccCC---CCchhhHhH
Q 009882 322 VHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYG 363 (523)
Q Consensus 322 i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~G 363 (523)
++.|+|+||.+...++++.|.+.+. +.++..+. -.|.++++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 6789999999999999999999652 33444332 235566776
No 137
>PF13941 MutL: MutL protein
Probab=73.07 E-value=23 Score=37.01 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=22.5
Q ss_pred CCCcceEEEecC-ccCcHHHHHHHHHhhC
Q 009882 319 KSTVHDVVLVGG-STRIPKVQQLLQDFFN 346 (523)
Q Consensus 319 ~~~i~~ViLvGG-~s~~p~v~~~l~~~f~ 346 (523)
...++.|+-+|| .++.|.-.+.|+..+.
T Consensus 383 L~~v~~iIgtGGvL~h~~~~~~il~~~~~ 411 (457)
T PF13941_consen 383 LTRVKYIIGTGGVLTHSPNPEEILKAALD 411 (457)
T ss_pred cccCCEEEEeCccccCCCCHHHHHHHHhh
Confidence 346999999999 7888888888877763
No 138
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=71.67 E-value=2.8 Score=39.94 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.5
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
+++|||+|||+++++++
T Consensus 1 y~lgiDiGTts~K~~l~ 17 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLF 17 (245)
T ss_dssp EEEEEEECSSEEEEEEE
T ss_pred CEEEEEEcccceEEEEE
Confidence 37999999999997664
No 139
>PRK07058 acetate kinase; Provisional
Probab=71.48 E-value=28 Score=35.52 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHHhhC
Q 009882 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (523)
Q Consensus 296 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (523)
.++-...++...|-...... ..+|.|+++||-+ +.+.+|+.+.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34444555555555544443 2599999999999 99999999998773
No 140
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=70.17 E-value=3.2 Score=41.12 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.6
Q ss_pred eEEEEEEeCCcceEEEEEEE
Q 009882 184 KNVLIFDLGGGTFDVSLLTI 203 (523)
Q Consensus 184 ~~vlV~D~GggT~Dvsv~~~ 203 (523)
.+++++|+||.|+|++++.-
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCEEEEEcCccceeeEEecC
Confidence 35899999999999999863
No 141
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=69.58 E-value=19 Score=26.02 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009882 117 REIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (523)
Q Consensus 117 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~ 159 (523)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 44445555433 3567899999999999999999999999753
No 142
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=67.70 E-value=1.5e+02 Score=31.16 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=44.9
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCc---eeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEe
Q 009882 135 VPAYFNDSQRQATKDAGVIAGLN---VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE 204 (523)
Q Consensus 135 VPa~~~~~qr~~l~~A~~~aGl~---~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~ 204 (523)
++......--+.+.+|.+.-|+. ++.+++..++..++...... ++++=+=+|.||=-+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~------~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP------NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC------CcEEEEEECCCccceeeeecc
Confidence 33344445578889999999986 67889999998776654433 466777788888766666554
No 143
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=67.41 E-value=4.9 Score=31.96 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=14.6
Q ss_pred EEEEEccccceEEEEE
Q 009882 9 AIGIDLGTTYSCVGVW 24 (523)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (523)
++|||+|.|++++|+.
T Consensus 3 ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 3 VLGLDPGRKGIGVAVV 18 (99)
T ss_pred EEEEccCCCeEEEEEE
Confidence 7999999999998876
No 144
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=67.10 E-value=20 Score=34.28 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=33.3
Q ss_pred CCcceEEEecCccCcHHHH----HHHHHhhC----Cccccc--CCCCchhhHhHHHHHHHHHhC
Q 009882 320 STVHDVVLVGGSTRIPKVQ----QLLQDFFN----GKELCK--NINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 320 ~~i~~ViLvGG~s~~p~v~----~~l~~~f~----~~~v~~--~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
...+.|+|.|-++++|-+- +.|++.|. +..+.. ..-----.|.|||+.|..++|
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 3467899999999987654 45555552 112211 111122468899998877765
No 145
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=66.73 E-value=4.5 Score=43.16 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=17.1
Q ss_pred CCCEEEEEccccceEEEEE
Q 009882 6 EGPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (523)
+..++|||+|||++++.++
T Consensus 3 ~~~~lgIDiGTt~~Kavl~ 21 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLF 21 (502)
T ss_pred ccEEEEEEcCCCcEEEEEE
Confidence 6789999999999998776
No 146
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=65.28 E-value=29 Score=33.90 Aligned_cols=49 Identities=24% Similarity=0.190 Sum_probs=33.2
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCC------cccccCCCCchhhHhHHHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNG------KELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~------~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
+++.|+|-|+.+..+.+.+.+++.... .++..+...+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 367899988887777666777665532 1233444557788999998764
No 147
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=64.76 E-value=24 Score=33.95 Aligned_cols=48 Identities=25% Similarity=0.218 Sum_probs=36.6
Q ss_pred CCCcceEEEecCccCcHHHHHHHHHhhC---CcccccCCCCchhhHhHHHH
Q 009882 319 KSTVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKNINPDEAVAYGAAV 366 (523)
Q Consensus 319 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~---~~~v~~~~~p~~aVa~Gaa~ 366 (523)
+..+|.|+|+||.++...+-++|.++.. ...+....+-.+|-|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 3569999999999999999999998662 23344444666789999863
No 148
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=63.71 E-value=99 Score=28.59 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCc---eeeeechhHHHHHhcc
Q 009882 142 SQRQATKDAGVIAGLN---VMRIINEPTAAAIAYG 173 (523)
Q Consensus 142 ~qr~~l~~A~~~aGl~---~~~li~Ep~Aaa~~~~ 173 (523)
.-.+.+.+|.+..|++ ++.++++.+|..++..
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 3467778888888886 5778999999877653
No 149
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=63.21 E-value=5.5 Score=42.69 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=16.4
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
+.++|||+|||+++++++
T Consensus 3 ~~~lgID~GTts~Ka~l~ 20 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIF 20 (520)
T ss_pred cEEEEEecCCCceEEEEE
Confidence 479999999999999887
No 150
>PRK00047 glpK glycerol kinase; Provisional
Probab=62.83 E-value=6 Score=42.19 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=16.4
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
+.++|||+|||+++++++
T Consensus 5 ~~~lgiD~GTts~Ka~l~ 22 (498)
T PRK00047 5 KYILALDQGTTSSRAIIF 22 (498)
T ss_pred CEEEEEecCCCceEEEEE
Confidence 469999999999999887
No 151
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=62.79 E-value=29 Score=34.12 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=31.7
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCC--------cccccCCCCchhhHhHHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNG--------KELCKNINPDEAVAYGAAVQA 368 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~v~~~~~p~~aVa~Gaa~~a 368 (523)
+++.|+|-||.+..+.+.+.+++.+.. .++......+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 467888888777666666666655421 123444456778999999875
No 152
>PLN02362 hexokinase
Probab=62.69 E-value=1.5e+02 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCc--eeeeechhHHHHHhccc
Q 009882 141 DSQRQATKDAGVIAGLN--VMRIINEPTAAAIAYGL 174 (523)
Q Consensus 141 ~~qr~~l~~A~~~aGl~--~~~li~Ep~Aaa~~~~~ 174 (523)
..-.+.+.+|.+.-|++ ++.++|+.+|..++...
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 205 KDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred chHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 34578888898888874 67899999998776443
No 153
>PLN02914 hexokinase
Probab=62.47 E-value=1.3e+02 Score=31.93 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEE
Q 009882 141 DSQRQATKDAGVIAGL--NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 202 (523)
Q Consensus 141 ~~qr~~l~~A~~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 202 (523)
..-.+.+.+|.+.-|+ ++..++|..+|..++...... ...+=+=+|.||=-+.+-+
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~------~~~iGlIlGTGtNacY~E~ 262 (490)
T PLN02914 205 KDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD------DVMVAVILGTGTNACYVER 262 (490)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC------CceEEEEEECCeeeEEEee
Confidence 3457788888888786 467899999998776544322 2344444666655444433
No 154
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=62.33 E-value=1.6e+02 Score=28.88 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=24.3
Q ss_pred cCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCc
Q 009882 154 AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGG 194 (523)
Q Consensus 154 aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~Ggg 194 (523)
.|++ +.+-++..|+|++-...-.. ...++++.+-+|-|
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG--RGIDDVVYITLGTG 143 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccc
Confidence 3444 57889999999876443221 23456777777765
No 155
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=62.33 E-value=5.7 Score=42.39 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=15.9
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 3 ~~lgiDiGTts~Ka~l~ 19 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIF 19 (504)
T ss_pred EEEEEecCCCceEEEEE
Confidence 68999999999999887
No 156
>PRK10331 L-fuculokinase; Provisional
Probab=62.17 E-value=5.9 Score=41.86 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=16.2
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
+.++|||+|||+++++++
T Consensus 2 ~~~lgID~GTt~~Ka~l~ 19 (470)
T PRK10331 2 DVILVLDCGATNVRAIAV 19 (470)
T ss_pred ceEEEEecCCCceEEEEE
Confidence 368999999999999887
No 157
>PLN02596 hexokinase-like
Probab=61.85 E-value=2.1e+02 Score=30.40 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCc--eeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEE
Q 009882 141 DSQRQATKDAGVIAGLN--VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI 203 (523)
Q Consensus 141 ~~qr~~l~~A~~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~ 203 (523)
..-.+.+.+|.+.-|++ ++.++|+.+|..++...... +..+=+=+|.||=-+.+-++
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~------~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK------DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC------CeEEEEEEecccceEEEEEc
Confidence 44456678888777874 67899999998776544322 23333446776654444433
No 158
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=61.22 E-value=1.6e+02 Score=28.75 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHcCCceeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEE
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 201 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 201 (523)
+..|++ +.+.++..|+|++-..... ....++++.+.+|.| +-.+++
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~--~~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDE--FTQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhcc--ccCCCcEEEEEecCc-eEEEEE
Confidence 344775 6788999998887432211 113457888888864 344444
No 159
>PLN02405 hexokinase
Probab=60.78 E-value=1.7e+02 Score=31.13 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCc--eeeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEE
Q 009882 141 DSQRQATKDAGVIAGLN--VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSL 200 (523)
Q Consensus 141 ~~qr~~l~~A~~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 200 (523)
..-.+.+.+|.+.-|++ ++.++|+.++..++...... ...+=+=+|.||=-+-+
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~------~~~iG~IlGTGtNacY~ 260 (497)
T PLN02405 205 QDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP------DVVAAVILGTGTNAAYV 260 (497)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC------CceEEEEEeCCeeeEEE
Confidence 34577888898888885 57899999998776544322 23444445665544433
No 160
>PLN02902 pantothenate kinase
Probab=59.98 E-value=1.5e+02 Score=33.60 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=31.8
Q ss_pred CCcceEEEecCccCc-----HHHHHHHHHhh--CCcccccCCCCchhhHhHHHHHHH
Q 009882 320 STVHDVVLVGGSTRI-----PKVQQLLQDFF--NGKELCKNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 320 ~~i~~ViLvGG~s~~-----p~v~~~l~~~f--~~~~v~~~~~p~~aVa~Gaa~~a~ 369 (523)
.+++.|+++|.+-+- ..+...+. ++ +..+.....+-...-|.||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 458899999997553 33444444 33 234555666777889999986543
No 161
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=58.79 E-value=7.3 Score=37.21 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.7
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
+++|||+|||.++++++
T Consensus 1 ~~lGIDiGtts~K~vl~ 17 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLM 17 (248)
T ss_pred CEEEEEcChhheEEEEE
Confidence 36899999999998765
No 162
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=58.16 E-value=32 Score=35.01 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=17.6
Q ss_pred CeEEEEEEeCCcceEEEEEE
Q 009882 183 EKNVLIFDLGGGTFDVSLLT 202 (523)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~ 202 (523)
...+-|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 46799999999999999765
No 163
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=58.15 E-value=37 Score=35.06 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHH
Q 009882 293 FEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQL 340 (523)
Q Consensus 293 ~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 340 (523)
++++-+-+++.+-.++.+.+++++....+|..++++|-.+..-++.-.
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl 102 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGL 102 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCC
Confidence 344445566777788889999999999999999999987766555543
No 164
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=58.09 E-value=47 Score=23.91 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009882 117 REIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (523)
Q Consensus 117 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~ 159 (523)
.+....+.... ....+..|+.++..||..+.+.|+..||...
T Consensus 5 ~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 5 KAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred HHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 34444444433 2357889999999999999999999998653
No 165
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=57.84 E-value=9 Score=32.84 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.6
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|+..+++|+.
T Consensus 2 riL~lD~G~kriGiAvs 18 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVS 18 (135)
T ss_dssp EEEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCeEEEEEe
Confidence 38999999999999987
No 166
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=56.77 E-value=2e+02 Score=28.18 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc-HHHHHHHHHhhCCcccccCCCCchhhHhHHHHHHHHHh
Q 009882 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI-PKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 299 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa~~a~~~~ 372 (523)
.+++++...|...++...+. .....+.|.||.... +++.+..++.... +|..-+..||.+.|....
T Consensus 227 ~Il~~aa~~i~~~~~~l~~~-~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 227 RILKEAAAYIATLLEALSIF-NGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHHHHHHHhcc-cCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhh
Confidence 46666767777777765322 335679999998887 8888887776632 336668889998886543
No 167
>PRK15027 xylulokinase; Provisional
Probab=56.68 E-value=8 Score=41.04 Aligned_cols=17 Identities=47% Similarity=0.423 Sum_probs=15.4
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 1 ~~lgID~GTts~Ka~l~ 17 (484)
T PRK15027 1 MYIGIDLGTSGVKVILL 17 (484)
T ss_pred CEEEEEecccceEEEEE
Confidence 37999999999999887
No 168
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=55.43 E-value=1.3e+02 Score=29.99 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=69.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----------C--CCHHHHHHHHHHHHHcCCceeeeechhHHHHHh
Q 009882 104 AAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPA----------Y--FNDSQRQATKDAGVIAGLNVMRIINEPTAAAIA 171 (523)
Q Consensus 104 ~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa----------~--~~~~qr~~l~~A~~~aGl~~~~li~Ep~Aaa~~ 171 (523)
+.++++..++..+... ...+..+||+|+. + |.-. .. +..+..|++.+.+||+=+|.|++
T Consensus 37 s~~~~l~~~l~~~~~~-----~~~p~~~~iavAGPV~~~~~~lTN~~W~i~-~~---~l~~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 37 SFEDALADYLAELDAG-----GPEPDSACIAVAGPVRDGKVRLTNLPWTID-AD---ELAQRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp HHHHHHHHHHHHTCHH-----HTCEEEEEEEESS-EETTCEE-SSSCCEEE-HH---HCHCCCT-TCEEEEEHHHHHHHH
T ss_pred CHHHHHHHHHHhcccC-----CCccceEEEEEecCccCCEEEecCCCcccc-HH---HHHHHhCCceEEEEcccchheec
Confidence 4566666666654111 1234456777763 2 2211 22 22234588899999999999886
Q ss_pred ccccccc--------CCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEec-CCCCCch-HHHHHHHHHHHHHHH
Q 009882 172 YGLDKKA--------TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATA-GDTHLGG-EDFDNRMVNHFVQEF 236 (523)
Q Consensus 172 ~~~~~~~--------~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~-~~~~lGG-~~id~~l~~~l~~~~ 236 (523)
...-... ....+...+|+=.|.| +-++.+.-.++.+.++.+. |+..+.= .+.+..|.+++.+++
T Consensus 108 l~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 108 LPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRY 181 (316)
T ss_dssp HHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHC
T ss_pred cCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhc
Confidence 5221111 1235667899999975 5555555556666677664 4444443 456678888887776
No 169
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=55.04 E-value=9.2 Score=40.37 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=15.6
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 2 ~ilgiD~GTss~K~~l~ 18 (465)
T TIGR02628 2 VILVLDCGATNLRAIAI 18 (465)
T ss_pred eEEEEecCCCcEEEEEE
Confidence 48999999999999887
No 170
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=54.98 E-value=13 Score=32.03 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=16.1
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
..++|||+|+..+++|+.
T Consensus 4 ~~iLalD~G~kriGvAv~ 21 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVS 21 (138)
T ss_pred CcEEEEEeCCCEEEEEEe
Confidence 349999999999999986
No 171
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=54.59 E-value=1e+02 Score=25.19 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCcCc-eeEEEeeeccCCCCcEEEEEEecCccccccCcceeEEEEeCCCCCCCCcceEEEEEEecCC--ceEEEEEE
Q 009882 409 TTIPT-KKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDAN--GILNVSAE 482 (523)
Q Consensus 409 ~~lP~-~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~~~~~~~~~~~i~v~~~~d~~--g~l~v~~~ 482 (523)
+.=|. ..+..|.........+.+.+|.-+.. .+..||++.+. +.....|.. ....|.+... |.|++++.
T Consensus 45 t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~~-~~~~~~L~~~~~g~l~~~~~ 116 (119)
T cd04036 45 SINPVWNETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGEK-VRVTFSLNPQGKEELEVEFL 116 (119)
T ss_pred CCCCccceEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCCc-EEEEEECCCCCCceEEEEEE
Confidence 34443 33445544333344578888875443 56789999987 544444433 6677777764 88877764
No 172
>PRK04123 ribulokinase; Provisional
Probab=54.26 E-value=9.8 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=16.1
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
..++|||+|||+++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~ 20 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLV 20 (548)
T ss_pred cEEEEEecCCCceEEEEE
Confidence 469999999999998877
No 173
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=53.30 E-value=39 Score=24.07 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009882 115 KMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (523)
Q Consensus 115 ~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~ 158 (523)
.+.+..+.++... .-.++.|+ .+..+|..+.+.|+..|+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444555555444 44679999 89999999999999999864
No 174
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=52.86 E-value=44 Score=33.76 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=31.8
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCc-cc--ccCCCCchhhHhHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGK-EL--CKNINPDEAVAYGAA 365 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v--~~~~~p~~aVa~Gaa 365 (523)
++|.|++.||.+..+.+++.|.+.+... ++ ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 4789999999999999999999877322 22 222233457777775
No 175
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=52.15 E-value=3.3e+02 Score=29.17 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=53.5
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHH-HHHHHhhCCccccc-CCCCchhhHhHH
Q 009882 287 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQ-QLLQDFFNGKELCK-NINPDEAVAYGA 364 (523)
Q Consensus 287 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~f~~~~v~~-~~~p~~aVa~Ga 364 (523)
.....++....+..+++++..+-+.+.+.. ..+.+.++||.+..-... +.+++-+ ...+.. +--.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 334455666666777777666655555432 156899999998887666 5555544 334433 344567899999
Q ss_pred HHHHHHHhC
Q 009882 365 AVQAAILSG 373 (523)
Q Consensus 365 a~~a~~~~~ 373 (523)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999876553
No 176
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=52.13 E-value=11 Score=40.18 Aligned_cols=17 Identities=41% Similarity=0.370 Sum_probs=15.6
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~ 18 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVF 18 (493)
T ss_pred eEEEEecCCCceEEEEE
Confidence 58999999999999887
No 177
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.86 E-value=1.1e+02 Score=29.25 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=45.0
Q ss_pred eeeechhHHHHHhcccccccCCCCCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 009882 159 MRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 234 (523)
Q Consensus 159 ~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 234 (523)
..+++.-.||+..+..+.. ....||+|+|-|.+-.+++. .+.+.-+.......+.-..+...|.++..-
T Consensus 207 av~mDskfaav~gal~dpa-----a~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~~G 275 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA-----ADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFVEG 275 (342)
T ss_pred EEEEcchhHhhhhcccCcc-----cCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHHhc
Confidence 3556666666666655543 23789999999999888875 345554555555667776666555555543
No 178
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=51.77 E-value=11 Score=40.28 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.4
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 1 ~~lgiDiGtt~~K~~l~ 17 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLF 17 (505)
T ss_pred CEEEEeccccceEEEEE
Confidence 37999999999999887
No 179
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=51.69 E-value=11 Score=40.55 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.5
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~ 18 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAV 18 (536)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999877
No 180
>PRK13331 pantothenate kinase; Reviewed
Probab=51.66 E-value=16 Score=34.89 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred CCCCCCCCEEEEEccccceEEEEE
Q 009882 1 MAGKGEGPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~ 24 (523)
|++.....++.||.|+|+++++++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f 24 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYF 24 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEE
Confidence 666667789999999999999887
No 181
>PLN02295 glycerol kinase
Probab=51.30 E-value=11 Score=40.20 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=15.4
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||+|||+++++++
T Consensus 1 ~vlgID~GTts~Ka~l~ 17 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIY 17 (512)
T ss_pred CEEEEecCCCceEEEEE
Confidence 37999999999999887
No 182
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=50.98 E-value=1.1e+02 Score=28.35 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCcceEEEEEEEeCC-eEEE
Q 009882 182 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEV 210 (523)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~-~~~v 210 (523)
....+|++|+||.++-++.+++.++ .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 4567999999999999999999876 4443
No 183
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=49.83 E-value=65 Score=33.15 Aligned_cols=30 Identities=33% Similarity=0.670 Sum_probs=24.2
Q ss_pred CCeEEEEEEeCCcceEEEEEEEeC-CeEEEE
Q 009882 182 GEKNVLIFDLGGGTFDVSLLTIEE-GIFEVK 211 (523)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~-~~~~v~ 211 (523)
..+.+|++|+||..+-++.+++.+ +.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 566899999999999999999984 444433
No 184
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=49.76 E-value=15 Score=31.61 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=16.2
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
..++|+|+||-.+++|+.
T Consensus 2 ~~ilalD~G~KrIGvA~s 19 (141)
T COG0816 2 MRILALDVGTKRIGVAVS 19 (141)
T ss_pred ceEEEEecCCceEEEEEe
Confidence 358999999999999987
No 185
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.06 E-value=13 Score=40.21 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=15.0
Q ss_pred EEEEEccccceEEEEE
Q 009882 9 AIGIDLGTTYSCVGVW 24 (523)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (523)
++|||+|||+++++++
T Consensus 2 ~lgID~GTts~Ka~l~ 17 (541)
T TIGR01315 2 YIGVDVGTGSARACII 17 (541)
T ss_pred EEEEEecCcCEEEEEE
Confidence 6899999999999887
No 186
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=48.82 E-value=36 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009882 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (523)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~A~~~aGl~~~ 159 (523)
.-.++.|+.+++.+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 456777999999999999999999998753
No 187
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=46.15 E-value=8.3 Score=39.97 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=39.4
Q ss_pred cceEEEecCccCcHHHHHHHHHhhCC-----cc------cc---cCCCCchhhHhHHHHHHHHHh
Q 009882 322 VHDVVLVGGSTRIPKVQQLLQDFFNG-----KE------LC---KNINPDEAVAYGAAVQAAILS 372 (523)
Q Consensus 322 i~~ViLvGG~s~~p~v~~~l~~~f~~-----~~------v~---~~~~p~~aVa~Gaa~~a~~~~ 372 (523)
-+.|++|||+...|.+...|+++.-+ .+ |. +..||...+=+|||++|..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 56799999999999999999987632 11 11 225788888999999987654
No 188
>PLN02669 xylulokinase
Probab=44.48 E-value=18 Score=39.05 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.9
Q ss_pred CCCEEEEEccccceEEEEE
Q 009882 6 EGPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (523)
...++|||+||+.++++++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~ 25 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVL 25 (556)
T ss_pred CCeEEEEecccCCeEEEEE
Confidence 5669999999999998887
No 189
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=41.89 E-value=21 Score=34.32 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.4
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||.|+|.+++.+.
T Consensus 2 ~~~GIDiGStttK~Vli 18 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLF 18 (262)
T ss_pred eEEEEEcCcccEEEEEE
Confidence 47999999999997654
No 190
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.57 E-value=2.4e+02 Score=28.70 Aligned_cols=96 Identities=15% Similarity=0.279 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHH---------HhcCCCCCCCHHHHHHHHHHHHHHhhhcCCCceeEEEEecccCCeeeEEEEcHHH
Q 009882 222 EDFDNRMVNHFVQEFK---------RKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRAR 292 (523)
Q Consensus 222 ~~id~~l~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~ 292 (523)
+.+|+.|.+.+.+++. .+.+..+....+....+.+..+.+++. .+..+.
T Consensus 13 D~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~~----------------------~l~~~~ 70 (374)
T PRK11199 13 DEVDKQLLELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEAL----------------------GVPPDL 70 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHhC----------------------CCCHHH
Confidence 4689999998887653 233333333333333332222222221 234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcceEEEecCccCcHH-HHHHHHH
Q 009882 293 FEELNMDLFRKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPK-VQQLLQD 343 (523)
Q Consensus 293 ~e~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~-v~~~l~~ 343 (523)
++.+++.+++.....= ++.++. ......|.++||.+.+-. +...+++
T Consensus 71 ~~~i~~~i~~~s~~~q----~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 71 IEDVLRRVMRESYSSE----NDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred HHHHHHHHHHHHHHHh----HHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 5666655555554311 222222 224577999997666533 3344444
No 191
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=41.20 E-value=1.1e+02 Score=32.07 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCEEEEEccccceEEEEEecceEEEEcCCceEecHhhHh
Q 009882 6 EGPAIGIDLGTTYSCVGVWTTPSYVGFTDTERLIGDAAKN 45 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~Ps~v~~~~~~~~~G~~A~~ 45 (523)
+..+++||-|||.+++ +.|+.+..+++...++
T Consensus 4 ~~yIlAiDqGTTssRa--------ivfd~~g~iva~~q~e 35 (499)
T COG0554 4 DKYILAIDQGTTSSRA--------IVFDEDGNIVAIAQRE 35 (499)
T ss_pred ccEEEEEecCCcceeE--------EEECCCCCchhhhhhh
Confidence 5789999999999984 5566666666554443
No 192
>PLN02377 3-ketoacyl-CoA synthase
Probab=40.93 E-value=85 Score=33.41 Aligned_cols=54 Identities=4% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEE-ecCccCcHHHHHHHHHhhC
Q 009882 293 FEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVL-VGGSTRIPKVQQLLQDFFN 346 (523)
Q Consensus 293 ~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 346 (523)
++...++...=+.+.++++|+++++++.+||.|+. +.+....|.+..+|.+.++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 44444555556677888999999999999999987 4555568999999999994
No 193
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=40.61 E-value=66 Score=31.39 Aligned_cols=45 Identities=11% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceEEE-ecCccCcHHHHHHHHHhhC
Q 009882 302 RKCMEPVEKCLRDAKMDKSTVHDVVL-VGGSTRIPKVQQLLQDFFN 346 (523)
Q Consensus 302 ~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 346 (523)
.-+...++++|+++++++.+||.++. +..++-.|.+..+|.++|+
T Consensus 85 ~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 85 MVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 34567888999999999999997655 6778999999999999994
No 194
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=38.44 E-value=1e+02 Score=31.76 Aligned_cols=47 Identities=6% Similarity=0.045 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHHhhC
Q 009882 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (523)
++-.+.++...|-....... ..+|.|+++||.+ ..+.|++.|.+.+.
T Consensus 302 ~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444555555554444331 3599999999999 99999999998774
No 195
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=38.26 E-value=19 Score=30.57 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.6
Q ss_pred EEEEccccceEEEEE
Q 009882 10 IGIDLGTTYSCVGVW 24 (523)
Q Consensus 10 vGID~GTt~s~va~~ 24 (523)
+|||+|+..+++|+.
T Consensus 1 laiD~G~kriGvA~~ 15 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQ 15 (130)
T ss_pred CeEccCCCeEEEEEE
Confidence 599999999999976
No 196
>PF00869 Flavi_glycoprot: Flavivirus glycoprotein, central and dimerisation domains; InterPro: IPR011999 Flaviviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus (YFV), West Nile virus (WNV), Tick-borne encephalitis virus, Japanese encephalitis virus and Dengue virus 2 viruses []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza virus and HIV. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents domains I and II, which are intertwined []. The glycoprotein E dimers on the viral surface re-cluster irreversibly into fusion-competent trimers upon exposure to low pH, as found in the acidic environment of the endosome. The formation of trimers results in a conformational change in the hinge region of domain II, a key structural element that opens a ligand-binding hydrophobic pocket at the interface between domains I and II. The conformational change results in the exposure of a fusion peptide loop at the tip of domain II, which is required in the fusion step to drive the cellular and viral membranes together by inserting into the membrane [].; GO: 0016021 integral to membrane, 0019031 viral envelope; PDB: 3P54_A 1OK8_A 1OAN_A 1OKE_B 3C5X_A 3C6E_A 2JSF_A 1URZ_B 3IYW_A 2JV6_A ....
Probab=36.60 E-value=99 Score=30.15 Aligned_cols=79 Identities=14% Similarity=0.348 Sum_probs=45.5
Q ss_pred EEEEEEecCccccc-cCcceeEEEEeCCCCCCCCcceEEEEEEecCCceEEEEEEEc---CCCceeeEEcCCchhhHHHH
Q 009882 429 VLIQVYEGERTRTR-DNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDK---TTAKRTRSQSPTTRVDCQRM 504 (523)
Q Consensus 429 ~~i~i~~g~~~~~~-~~~~ig~~~i~~~~~~~~~~~~i~v~~~~d~~g~l~v~~~~~---~~~~~~~~~~~~~~~~~~~~ 504 (523)
+.+.+..|...... .+....+++|. |.++ ..++++..-|.++++++-. +.++..-++.... -=.
T Consensus 139 V~v~vH~g~~~~~~~~~~~~~~~~fT--p~s~------~~~~~lgdYG~vtl~C~~~sg~D~~~~yl~~~~~k----~wl 206 (293)
T PF00869_consen 139 VKVEVHGGTKSAANGTSKHRKTATFT--PQSP------KQTVELGDYGTVTLECRVRSGLDFSQYYLVEMGNK----SWL 206 (293)
T ss_dssp EEEEEE-SBCTTTTSHTTTEEEEEEB--TTS-------EEEEEEGGGBEEEEEEECGGSS-TTSEEEEEETTE----EEE
T ss_pred EEEeccCCccccccccccceeEEEEE--eCCC------cEEEEcCCCcEEEEEEEeccCcChhhEEEEEECCe----eEE
Confidence 34455555443332 34556777776 2222 5688999999999999833 2334444444310 001
Q ss_pred HHHhhhcCCCCCCCC
Q 009882 505 KLRRWFKRPRMPWKT 519 (523)
Q Consensus 505 ~~~~~~~~~~~~~~~ 519 (523)
..++||..=||||+.
T Consensus 207 VhRdWf~DL~LPW~~ 221 (293)
T PF00869_consen 207 VHRDWFHDLPLPWTH 221 (293)
T ss_dssp EEHHHHHTSSS-EEE
T ss_pred EEHhHHhcCCCcccc
Confidence 339999999999974
No 197
>PRK13321 pantothenate kinase; Reviewed
Probab=36.06 E-value=30 Score=33.24 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.7
Q ss_pred EEEEEccccceEEEEE
Q 009882 9 AIGIDLGTTYSCVGVW 24 (523)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (523)
+++||+|.|+++++++
T Consensus 2 iL~IDIGnT~ik~gl~ 17 (256)
T PRK13321 2 LLLIDVGNTNIKLGVF 17 (256)
T ss_pred EEEEEECCCeEEEEEE
Confidence 6899999999998886
No 198
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=35.74 E-value=27 Score=36.32 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=27.2
Q ss_pred HcCCCCCCcceEEEecC-ccCcH--HHHHHHHH-hh--CCcccccCCCCch
Q 009882 314 DAKMDKSTVHDVVLVGG-STRIP--KVQQLLQD-FF--NGKELCKNINPDE 358 (523)
Q Consensus 314 ~~~~~~~~i~~ViLvGG-~s~~p--~v~~~l~~-~f--~~~~v~~~~~p~~ 358 (523)
+.|.+...++.|+-+|| .++.| .....++. .| .+..+..+.+|+.
T Consensus 382 q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~~~~~~~L~p~~~~~ 432 (463)
T TIGR01319 382 QIGKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFDDADARHLKPQEFEY 432 (463)
T ss_pred ccCCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhccCCCccccCCcCCeE
Confidence 33445556899999999 67777 66666644 33 2233444545544
No 199
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=34.69 E-value=31 Score=30.65 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.7
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
.++|||-|+++++.|+.
T Consensus 3 ~iLGIDPgl~~tG~avi 19 (164)
T PRK00039 3 RILGIDPGLRRTGYGVI 19 (164)
T ss_pred EEEEEccccCceeEEEE
Confidence 58999999999999987
No 200
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=34.03 E-value=38 Score=35.84 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=17.2
Q ss_pred CCCEEEEEccccceEEEEE
Q 009882 6 EGPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (523)
...++|||.|||.++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~ 23 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVF 23 (516)
T ss_pred cceEEEEEcCCCceEEEEE
Confidence 5779999999999999887
No 201
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=34.01 E-value=1.1e+02 Score=29.76 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=37.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccC
Q 009882 287 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTR 333 (523)
Q Consensus 287 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 333 (523)
.++.++|++.+.|.+.+|.+.+++-+.+.++.. +--|+..-|+..
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~--vPmi~fakG~g~ 263 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAP--VPMILFAKGSGG 263 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCC--CceEEEEcCcch
Confidence 679999999999999999999999999876543 556777776664
No 202
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=33.74 E-value=35 Score=29.72 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=13.0
Q ss_pred EEEEEccccceEEEEE
Q 009882 9 AIGIDLGTTYSCVGVW 24 (523)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (523)
|+|||-|+++++.|+.
T Consensus 1 ILGIDPgl~~tG~avi 16 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVI 16 (149)
T ss_dssp EEEEE--SSEEEEEEE
T ss_pred CEEECCCCCCeeEEEE
Confidence 6899999999999987
No 203
>PF13941 MutL: MutL protein
Probab=32.78 E-value=1.1e+02 Score=32.18 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.7
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCch-HHHHHHHHHHH
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG-EDFDNRMVNHF 232 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG-~~id~~l~~~l 232 (523)
+|++|||+.+|-++++....+..++++......-=. .|+..-+.+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 799999999999999997777777776653332112 35655555444
No 204
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=31.67 E-value=3.4e+02 Score=28.63 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=23.4
Q ss_pred CCCeEEEEEEeCCcceEEEEEEEeCCe
Q 009882 181 VGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (523)
Q Consensus 181 ~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (523)
.+.+.++.+|+||..+-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 345679999999999999999998863
No 205
>PTZ00107 hexokinase; Provisional
Probab=31.29 E-value=6.5e+02 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeeeechhHHHHHhccccc
Q 009882 136 PAYFNDSQRQATKDAGVIAGLN--VMRIINEPTAAAIAYGLDK 176 (523)
Q Consensus 136 Pa~~~~~qr~~l~~A~~~aGl~--~~~li~Ep~Aaa~~~~~~~ 176 (523)
|..-...-.+.+.+|.+.-|++ ++.++|+.+|..++.....
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 3334445677888888888874 5789999999877654443
No 206
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.33 E-value=1.2e+02 Score=32.52 Aligned_cols=54 Identities=6% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEE-ecCccCcHHHHHHHHHhhC
Q 009882 293 FEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVL-VGGSTRIPKVQQLLQDFFN 346 (523)
Q Consensus 293 ~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 346 (523)
+++.-++.-.-+...++++|+++++++.+||.|++ +.+....|.+..+|.+.++
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 33333344444566777889999999999999987 4455568999999999994
No 207
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=29.56 E-value=25 Score=36.91 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.8
Q ss_pred EEEEccccceEEEEE
Q 009882 10 IGIDLGTTYSCVGVW 24 (523)
Q Consensus 10 vGID~GTt~s~va~~ 24 (523)
+|||+|||+++++++
T Consensus 1 ~aiD~Gtt~~k~~l~ 15 (454)
T TIGR02627 1 VAVDLGASSGRVMLA 15 (454)
T ss_pred CcEeccCCchheEEE
Confidence 589999999999887
No 208
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=29.01 E-value=1.9e+02 Score=29.85 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHHhhC
Q 009882 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (523)
Q Consensus 299 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (523)
-...++...|-......+ ..+|.|+++||.+ ..+.||+.|.+.+.
T Consensus 308 ~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 308 MYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344444444444443332 2489999999999 99999999998774
No 209
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=28.91 E-value=1.7e+02 Score=28.57 Aligned_cols=50 Identities=32% Similarity=0.333 Sum_probs=29.8
Q ss_pred eEEEecCccCc-HHHHHHHHHhhCC---cccccCCCCchhhHhHHHHHHHHHhC
Q 009882 324 DVVLVGGSTRI-PKVQQLLQDFFNG---KELCKNINPDEAVAYGAAVQAAILSG 373 (523)
Q Consensus 324 ~ViLvGG~s~~-p~v~~~l~~~f~~---~~v~~~~~p~~aVa~Gaa~~a~~~~~ 373 (523)
.|+++||.-.+ ..+++-....... .+-.....|.+.-|.|||++|+.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 69999996543 3344322221111 11122346888999999999997653
No 210
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=28.86 E-value=13 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCEEEEEccccceEEEEE
Q 009882 7 GPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (523)
.-++|+|+||+|++++..
T Consensus 57 ~d~~g~~~gt~n~~~~~~ 74 (213)
T PLN00130 57 NDILGTGLGTNNAIREER 74 (213)
T ss_pred cceeccCCCcchHHHHHH
Confidence 448999999999988765
No 211
>PLN03170 chalcone synthase; Provisional
Probab=28.49 E-value=3.9e+02 Score=27.53 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHHhhC
Q 009882 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (523)
Q Consensus 299 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (523)
...+=..+..+++|++++++..+|+.|+.+-.+. ..|.+.-.|.+.++
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3444456788899999999999999988766544 69999999999994
No 212
>PLN03172 chalcone synthase family protein; Provisional
Probab=28.12 E-value=1.6e+02 Score=30.20 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHHhhC
Q 009882 298 MDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (523)
Q Consensus 298 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (523)
+...+=..+..+++|++++++..+||.|+++-.+. ..|.+.-.|.+.++
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33444456778899999999999999998766554 69999999999984
No 213
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=28.07 E-value=1.9e+02 Score=27.83 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=31.9
Q ss_pred CCeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 009882 182 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 226 (523)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 226 (523)
+...++.+|+|..++-+.+.+..+..+.+.......--.|.-+|-
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di 66 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDF 66 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeH
Confidence 566899999999999988877655555555555545555665563
No 214
>PLN03173 chalcone synthase; Provisional
Probab=27.57 E-value=2.5e+02 Score=28.84 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHHhhC
Q 009882 300 LFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (523)
Q Consensus 300 ~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (523)
..+=..+.++++|++++++..+||.|+.+..+. ..|.+.-.|.+.++
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 334445678899999999999999998876544 58999999999984
No 215
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.48 E-value=91 Score=31.69 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc
Q 009882 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI 334 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 334 (523)
++...+.+.+.|+++|++++++..+|+++++-+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 34556677788999999999999999999999998875
No 216
>PRK13321 pantothenate kinase; Reviewed
Probab=27.19 E-value=2.4e+02 Score=26.98 Aligned_cols=46 Identities=11% Similarity=0.320 Sum_probs=26.3
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 232 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 232 (523)
+|.+|+|++++-+.++. .+..........+..-+...+-..+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~T~~~~~~~~~~~~l~~l~ 47 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLPTDKSRTSDELGILLLSLF 47 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 58899999999999998 32211111222333344555544444444
No 217
>PRK00292 glk glucokinase; Provisional
Probab=27.16 E-value=51 Score=32.66 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHcCCceeeeechhHHHHHhcccccc------cCCC--CCeEEEEEEeCCcc
Q 009882 152 VIAGLNVMRIINEPTAAAIAYGLDKK------ATSV--GEKNVLIFDLGGGT 195 (523)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~------~~~~--~~~~vlV~D~GggT 195 (523)
+..|++.+.+.++-.|+|++-..... .... ..++++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 34588778999999999997533100 0011 13568888888753
No 218
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=26.72 E-value=2.7e+02 Score=27.32 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=38.4
Q ss_pred CeEEEEEEeCCcceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q 009882 183 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 237 (523)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 237 (523)
...++-+|+||.++.++++...+..+..........-....+-+.+.+.+.+.+.
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 59 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLK 59 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHH
Confidence 4578999999999999999987765444444433333335777777777765554
No 219
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=25.88 E-value=1.5e+02 Score=23.03 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.7
Q ss_pred EEEEEEeCCcceEEEEEEEeCC
Q 009882 185 NVLIFDLGGGTFDVSLLTIEEG 206 (523)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~~ 206 (523)
.+|-+|+||..+-++++...+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC
Confidence 3789999999999999865443
No 220
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.28 E-value=62 Score=30.88 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=33.3
Q ss_pred EEEEEEeCCcceEEEEEEEeC-CeEEE----------------------EEecCCCCCchHHHHHHHHHHHHH
Q 009882 185 NVLIFDLGGGTFDVSLLTIEE-GIFEV----------------------KATAGDTHLGGEDFDNRMVNHFVQ 234 (523)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~-~~~~v----------------------~~~~~~~~lGG~~id~~l~~~l~~ 234 (523)
++|++|+|.||.|+-.+.-.. +.+.. +.-. +...||--.+.++.+++..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~ 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc
Confidence 479999999999998875321 11111 1112 2468899999999988854
No 221
>PLN02192 3-ketoacyl-CoA synthase
Probab=25.04 E-value=1.5e+02 Score=31.61 Aligned_cols=54 Identities=6% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEec-CccCcHHHHHHHHHhhC
Q 009882 293 FEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVG-GSTRIPKVQQLLQDFFN 346 (523)
Q Consensus 293 ~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvG-G~s~~p~v~~~l~~~f~ 346 (523)
+++..++...-+...++++|+++++++.+||.|+... +....|.+..+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 4444445555566788899999999999999887652 23458999999999994
No 222
>PRK13320 pantothenate kinase; Reviewed
Probab=24.78 E-value=63 Score=30.77 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.5
Q ss_pred CEEEEEccccceEEEEE
Q 009882 8 PAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (523)
+++.||.|+|+++.+++
T Consensus 3 M~L~iDiGNT~ik~~~~ 19 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVF 19 (244)
T ss_pred eEEEEEeCCCcEEEEEE
Confidence 48999999999999886
No 223
>PLN02914 hexokinase
Probab=24.60 E-value=2.2e+02 Score=30.29 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCcceEEEEEEEeCC
Q 009882 182 GEKNVLIFDLGGGTFDVSLLTIEEG 206 (523)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (523)
+...+|.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCC
Confidence 3457999999999999999999763
No 224
>PRK13326 pantothenate kinase; Reviewed
Probab=24.55 E-value=69 Score=30.90 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.2
Q ss_pred CCCCEEEEEccccceEEEEE
Q 009882 5 GEGPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~ 24 (523)
.-++.+.||.|+|+++++++
T Consensus 4 ~~~~~L~IDiGNT~ik~glf 23 (262)
T PRK13326 4 VLSSQLIIDIGNTSISFALY 23 (262)
T ss_pred cccEEEEEEeCCCeEEEEEE
Confidence 34678999999999999887
No 225
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=23.94 E-value=40 Score=35.57 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=13.9
Q ss_pred EEEEccccceEEEEE
Q 009882 10 IGIDLGTTYSCVGVW 24 (523)
Q Consensus 10 vGID~GTt~s~va~~ 24 (523)
+|||+|||+++++++
T Consensus 1 lgIDiGtt~ik~~l~ 15 (481)
T TIGR01312 1 LGIDLGTSGVKALLV 15 (481)
T ss_pred CceeecCcceEEEEE
Confidence 699999999999987
No 226
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=22.71 E-value=2.4e+02 Score=29.77 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=33.7
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeE-EEEEecCCCCCchHHHHHHHH
Q 009882 185 NVLIFDLGGGTFDVSLLTIEEGIF-EVKATAGDTHLGGEDFDNRMV 229 (523)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~~~~-~v~~~~~~~~lGG~~id~~l~ 229 (523)
+=+-+|+|.+++-..++.+..+.+ ....+....--||+++|.+..
T Consensus 165 YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 165 YGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 347899999999999999987754 334445555679999987654
No 227
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.68 E-value=1.8e+02 Score=23.55 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcce--EEEecCccCcHHHHHHHHHhhC
Q 009882 298 MDLFRKCMEPVEKCLRDAKMDKSTVHD--VVLVGGSTRIPKVQQLLQDFFN 346 (523)
Q Consensus 298 ~~~~~~~~~~i~~~l~~~~~~~~~i~~--ViLvGG~s~~p~v~~~l~~~f~ 346 (523)
..-...+.+-|+.+|+.++.+..+|-. ++|+.-....+.+.+..+++|+
T Consensus 32 ~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 32 EAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 345566777778888888887776544 5777655788888888899996
No 228
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=22.67 E-value=3.6e+02 Score=25.15 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCCCCcceEEEecCccC--cHHHHHHHHHhhC
Q 009882 304 CMEPVEKCLRDAKMDKSTVHDVVLVGGSTR--IPKVQQLLQDFFN 346 (523)
Q Consensus 304 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~--~p~v~~~l~~~f~ 346 (523)
....++++|++++++..+|+.|++...... .|.....+...++
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg 55 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLG 55 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhC
Confidence 356778889999999999999988765444 5788888988884
No 229
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.36 E-value=1.3e+02 Score=24.85 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceEEEecCccCc--HHHHHHHHHhhCC
Q 009882 302 RKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI--PKVQQLLQDFFNG 347 (523)
Q Consensus 302 ~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~--p~v~~~l~~~f~~ 347 (523)
......++++|+++++.+.+|+.|..-|-++.. +.=.+.+++.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 455677999999999999999999998877765 2333457777753
No 230
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=22.23 E-value=1.5e+02 Score=30.51 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeechhHH-HHHhccccc
Q 009882 128 IKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTA-AAIAYGLDK 176 (523)
Q Consensus 128 ~~~~VitVPa~~~~~qr~~l~~A~~~aGl~~~~li~Ep~A-aa~~~~~~~ 176 (523)
+.++|++-|+.-+..---.+.-||..+|++.+.-+--..| ||++|+...
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 4589999998876666678899999999999998888887 567887543
No 231
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=3.2e+02 Score=30.22 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=37.6
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCc--ccc---cCCCCchhhHhHHHHHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGK--ELC---KNINPDEAVAYGAAVQAA 369 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~--~v~---~~~~p~~aVa~Gaa~~a~ 369 (523)
.|+.|.|+||.....++.+.+.+.+.+. ++. .....|-.++.|=++.++
T Consensus 693 gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 693 GINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred CccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHHH
Confidence 4889999999999999999999888543 222 223457789999888773
No 232
>PRK12408 glucokinase; Provisional
Probab=22.00 E-value=2.8e+02 Score=27.75 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=28.4
Q ss_pred HcCCceeeeechhHHHHHhcccccc-------cCCCCC-eEEEEEEeCCcceEEEEE
Q 009882 153 IAGLNVMRIINEPTAAAIAYGLDKK-------ATSVGE-KNVLIFDLGGGTFDVSLL 201 (523)
Q Consensus 153 ~aGl~~~~li~Ep~Aaa~~~~~~~~-------~~~~~~-~~vlV~D~GggT~Dvsv~ 201 (523)
..|++.+.++|+-.|+|++-..... ...... ..++++=+|.| +-.+++
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTG-iGggiv 162 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTG-LGAALW 162 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCc-ceEEEE
Confidence 4588779999999999987432210 001111 46777777754 333443
No 233
>PRK13318 pantothenate kinase; Reviewed
Probab=21.98 E-value=3.4e+02 Score=25.86 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.9
Q ss_pred EEEEEeCCcceEEEEEE
Q 009882 186 VLIFDLGGGTFDVSLLT 202 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~ 202 (523)
+|.+|+|+..+-++++.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 58899999999999998
No 234
>PTZ00107 hexokinase; Provisional
Probab=21.96 E-value=2.8e+02 Score=29.31 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCcceEEEEEEEeCC
Q 009882 182 GEKNVLIFDLGGGTFDVSLLTIEEG 206 (523)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (523)
+...+|.+|+||.++-|..+++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 3456999999999999999999864
No 235
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=21.84 E-value=1.7e+02 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=22.8
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEec
Q 009882 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATA 214 (523)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~ 214 (523)
+||++.|++++.+++++-+...++.....
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~ 30 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRH 30 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecC
Confidence 79999999999999998776555444333
No 236
>PLN03168 chalcone synthase; Provisional
Probab=21.78 E-value=3.2e+02 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCc-cCcHHHHHHHHHhhC
Q 009882 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGS-TRIPKVQQLLQDFFN 346 (523)
Q Consensus 299 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~ 346 (523)
...+=..+..+++|++++++..+||+|+.+-.+ -.+|.+.-.|.+.++
T Consensus 100 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 100 QVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 344445678899999999999999999875332 357999999999984
No 237
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=21.77 E-value=77 Score=27.08 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=14.7
Q ss_pred CCCCEEEEEccccceEEEEE
Q 009882 5 GEGPAIGIDLGTTYSCVGVW 24 (523)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~ 24 (523)
+...+||||-|||. ++|+.
T Consensus 30 ~~~lIVGiDPG~tt-giAil 48 (138)
T PF04312_consen 30 RRYLIVGIDPGTTT-GIAIL 48 (138)
T ss_pred CCCEEEEECCCcee-EEEEE
Confidence 45679999999987 55554
No 238
>PRK14878 UGMP family protein; Provisional
Probab=21.73 E-value=1.2e+02 Score=30.15 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHH
Q 009882 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQ 339 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 339 (523)
.....+.+...++++|++++++..+||.|.++-|-...+.++-
T Consensus 41 ~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 41 AQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHH
Confidence 3455677888999999999999999999999988777776663
No 239
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.39 E-value=1.5e+02 Score=29.57 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHH
Q 009882 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQ 338 (523)
Q Consensus 297 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~ 338 (523)
.....+.+...++++|++++++..+||.|.++-|-...++++
T Consensus 42 ~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 42 AEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 345567788889999999999999999999999877777666
No 240
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=21.30 E-value=2.6e+02 Score=24.57 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=50.2
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH----------------HHHHHHHHHHcCCceeeeechhHH
Q 009882 104 AAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQ----------------RQATKDAGVIAGLNVMRIINEPTA 167 (523)
Q Consensus 104 ~~~~v~~~~l~~l~~~a~~~~~~~~~~~VitVPa~~~~~q----------------r~~l~~A~~~aGl~~~~li~Ep~A 167 (523)
+++++...+.+.+.+.....- .. .+.|++|...+... .+.+.+ ..++ .+.+.++..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccce-EEEEecCCCc
Confidence 567777776666666555542 11 45555554433221 223333 3355 4578899999
Q ss_pred HHHhcccccccCCCCCeEEEEEEeCCcceEEEEE
Q 009882 168 AAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 201 (523)
Q Consensus 168 aa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 201 (523)
+|++...... ....++++.+-+|-| .-.+++
T Consensus 104 ~a~ae~~~~~--~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGA--AKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHST--TTTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCc--cCCcceEEEEEeecC-CCccee
Confidence 9987654322 123457888888875 455555
No 241
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=21.02 E-value=2e+02 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=30.5
Q ss_pred CcceEEEecCccCcHHHHHHHHHhhCCcccccCCCCchhhHhHHH
Q 009882 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAA 365 (523)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~Gaa 365 (523)
.++.|+| |++..|++.+.+++.++. .+ .-.||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~-~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPE-HV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCC-Cc-EEECCHHHHHHHHH
Confidence 3666655 999999999999999853 22 34688888777665
No 242
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=20.32 E-value=1.5e+02 Score=29.24 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHH
Q 009882 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLL 341 (523)
Q Consensus 296 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 341 (523)
......+.+...|+++|++++++..+||.|.++-|-...+.+|--+
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~ 89 (305)
T TIGR00329 44 ASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA 89 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH
Confidence 3445677888899999999999999999999999999999888543
No 243
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=20.24 E-value=2.2e+02 Score=26.82 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHH
Q 009882 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQD 343 (523)
Q Consensus 294 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 343 (523)
+++...+.+.+.+.+.+.+++.+ .-.+.|.||++-.+..+...+.
T Consensus 6 ~~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 6 AELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 34445556666667777776533 3479999999999999988864
Done!