Query 009883
Match_columns 523
No_of_seqs 142 out of 189
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bu3_A ALR0975 protein; phytoc 100.0 8E-81 2.7E-85 612.4 18.4 216 2-221 31-253 (254)
2 3k8u_A Putative ABC transporte 98.0 2E-05 6.8E-10 69.9 10.0 125 46-200 7-131 (156)
3 3b79_A Toxin secretion ATP-bin 97.5 0.00016 5.4E-09 61.3 6.5 114 53-200 4-117 (129)
4 3zua_A CLD, alpha-hemolysin tr 97.4 0.00046 1.6E-08 60.2 8.3 116 50-200 8-123 (142)
5 3erv_A Putative C39-like pepti 97.0 0.0094 3.2E-07 58.2 13.5 148 38-200 30-213 (236)
6 1cv8_A Staphopain; cysteine pr 68.5 27 0.00093 33.0 9.5 114 45-173 13-131 (174)
7 1x9y_A Cysteine proteinase; ha 60.2 36 0.0012 35.5 9.4 111 45-169 198-313 (367)
8 1pxv_A Cysteine protease; hydr 55.2 31 0.0011 32.9 7.4 114 46-173 23-141 (183)
9 2jml_A DNA binding domain/tran 30.6 32 0.0011 27.2 2.8 56 59-114 20-77 (81)
10 3gp4_A Transcriptional regulat 27.6 44 0.0015 29.5 3.5 37 77-113 35-71 (142)
11 3bij_A Uncharacterized protein 27.0 4.1E+02 0.014 25.5 10.6 48 106-153 35-84 (285)
12 3bdk_A D-mannonate dehydratase 26.6 2.5E+02 0.0086 28.8 9.4 94 77-173 22-161 (386)
13 2vz4_A Tipal, HTH-type transcr 26.2 30 0.001 28.8 2.1 43 71-113 28-70 (108)
14 1q06_A Transcriptional regulat 25.1 33 0.0011 29.9 2.2 37 77-113 33-69 (135)
15 1r8d_A Transcription activator 24.5 35 0.0012 28.4 2.2 46 68-113 25-71 (109)
16 1tz9_A Mannonate dehydratase; 22.8 2E+02 0.0069 28.2 7.6 48 104-151 57-117 (367)
17 3gpv_A Transcriptional regulat 20.9 42 0.0014 29.7 2.0 42 72-113 44-85 (148)
18 3phx_A RNA-directed RNA polyme 20.5 39 0.0013 31.5 1.8 50 105-167 105-158 (185)
19 3cuq_A Vacuolar-sorting protei 20.4 76 0.0026 31.0 3.9 91 62-158 45-147 (234)
20 2zhg_A Redox-sensitive transcr 20.2 42 0.0014 30.1 1.9 42 71-113 38-79 (154)
No 1
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=100.00 E-value=8e-81 Score=612.40 Aligned_cols=216 Identities=37% Similarity=0.614 Sum_probs=193.0
Q ss_pred cccccccccCCCCCccccCChhhHHHHHHHHhcCCccccccccccccccCCCccccHHHHHHHHHhccCC-CCCCcCCCc
Q 009883 2 AMAGLYRRMLPSPPAIDFASSEGKQLFLEAIQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAID-PGRKWKGPW 80 (523)
Q Consensus 2 ~~~sfYrR~LP~P~~I~fsS~EGk~Lf~eAl~~g~~e~ff~La~qF~TQ~npAyCGvASlamVLNAL~iD-P~r~wkgpw 80 (523)
+|++||+|+||+ ++|+|+|+||++||.+| |+|++||+|++||+||+|++||||||++||||||++| |++.|||||
T Consensus 31 ~~~~~~~~~lp~-~~i~~~S~eG~~ll~~a---~~~~~ff~L~~qf~tQ~n~ayCGlASlaMVLNALgid~P~~~wk~pw 106 (254)
T 2bu3_A 31 HMKLEQTLTLSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPY 106 (254)
T ss_dssp ---------CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------C
T ss_pred hhhhccccCCCh-hhccccCHHHHHHHHhC---CCchhhhcccccccccCCCCchHHHHHHHHHHhhCCCCCCccccCce
Confidence 578999999995 89999999999999998 8999999999999999999999999999999999999 999999999
Q ss_pred ccc-ccchhc-----cccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEeeccc
Q 009883 81 RWF-DESMLD-----CCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGA 154 (523)
Q Consensus 81 Rwf-~E~mLd-----cc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~~ 154 (523)
||| +|+||+ ||.+++.|+++||||+||+|||+|+|++|++|++++.++++||+.|++++++++++|||||+|++
T Consensus 107 r~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~ 186 (254)
T 2bu3_A 107 RVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKE 186 (254)
T ss_dssp CCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGG
T ss_pred eeechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccc
Confidence 999 689998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhccccCCcCCceeeEEEEeCCCC
Q 009883 155 FKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRPHR 221 (523)
Q Consensus 155 LgQtGgGHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~SgksRG~ilIs~~~~ 221 (523)
|||+|+||||||||||+++|+||||||||||||||||++++||+||+++|++||++||||+|++.++
T Consensus 187 l~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~ 253 (254)
T 2bu3_A 187 IGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253 (254)
T ss_dssp GTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred cCCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 2
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=98.05 E-value=2e-05 Score=69.93 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=88.6
Q ss_pred cccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCC
Q 009883 46 YFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQ 125 (523)
Q Consensus 46 qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~ 125 (523)
-|..|.+..-||+|+++|+++-.|++-+.. .+.+.+ .+.+.|+|+.++...|+..|++++.++.+
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~~g~~~s~~----------~L~~~~----~~~~~g~s~~~l~~~a~~~Gl~a~~~~~~- 71 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKHYGSNYSIA----------YLRELS----KTNKQGTTALGIVEAAKKLGFETRSIKAD- 71 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHHTTCCCCHH----------HHHHHT----TCBTTBCCHHHHHHHHHHTTEEEEEEECC-
T ss_pred ceEECCCCCCHHHHHHHHHHHHhCCCCCHH----------HHHHHc----CCCCCCcCHHHHHHHHHHCCCeeEEEEee-
Confidence 356799999999999999999998653321 111111 12468999999999999999999998854
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009883 126 STIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (523)
Q Consensus 126 ~SldeFR~~v~~~~ss~d~~vIVNY~R~~LgQtGgGHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (523)
++.|+ + ..-.-++|+...+. .|.|||--|.+++ .+.|+|.|++.- -.+.+++.++|-+.-
T Consensus 72 --~~~~~--l----~~~~lP~I~~~~~~----g~~~hfvVl~~~~--~~~v~I~DP~~g-~~~~~ls~~ef~~~w 131 (156)
T 3k8u_A 72 --MTLFD--Y----NDLTYPFIVHVIKG----KRLQHYYVVYGSQ--NNQLIIGDPDPS-VKVTRMSKERFQSEW 131 (156)
T ss_dssp --GGGGG--C----TTCCSCEEEEEEET----TEEEEEEEEEEEE--TTEEEEEECSTT-TEEEEEEHHHHHHHE
T ss_pred --hhhhh--H----hcCCCCEEEEEEec----CCCcEEEEEEEEc--CCEEEEEcCCCC-cceEEEcHHHHHhhC
Confidence 33221 1 22345777766432 1358999998888 578999998642 138999999976654
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.50 E-value=0.00016 Score=61.34 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=82.3
Q ss_pred CccccHHHHHHHHHhccCCCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Q 009883 53 PAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFR 132 (523)
Q Consensus 53 pAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~~SldeFR 132 (523)
..-||+|+++|+++-.|++-+.. .+...+ .....|+|+.++...|+..|++++.++.+ ++++.
T Consensus 4 ~~dcgla~L~~i~~~~g~~~~~~----------~l~~~~----~~~~~g~s~~~l~~~a~~~Gl~~~~~~~~---~~~L~ 66 (129)
T 3b79_A 4 MKDPLLNSLIYVSRYYGLANSPE----------ALVNGL----PLSDGKLTPFLLPRAAERAGLVAKENRAE---LEKIS 66 (129)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCHH----------HHHTTC----CCBTTBCCTTTHHHHHHHHTEEEEEEECC---GGGSC
T ss_pred cCCcHHHHHHHHHHHhCCCCCHH----------HHHhcC----CCcCCCCCHHHHHHHHHHCCCeEEEEECC---HHHCC
Confidence 45799999999999998764432 121211 12357999999999999999999998854 33332
Q ss_pred HHHHHhhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009883 133 KYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (523)
Q Consensus 133 ~~v~~~~ss~d~~vIVNY~R~~LgQtGgGHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (523)
+ + .-+.|+... .|||--|.+++.+...++|.|++. ...+.+++.++|-+.-
T Consensus 67 ~-----l---~lP~I~~~~--------~~h~vVl~~~~~~~~~~~i~dp~~-~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 67 S-----L---ILPAILVLK--------GGDSCVLNSINMETREAEVTTLES-GMVPISIPLEDLLEQY 117 (129)
T ss_dssp G-----G---GCSEEEEEG--------GGEEEEEEEEETTTTEEEEECTTT-TTSCEEEEHHHHHHHE
T ss_pred c-----C---CCCEEEEEc--------CCCEEEEEEEcCCCceEEEEccCC-CCCcEEeeHHHHHhhC
Confidence 1 1 135666553 469999999998766899999862 3568999999986644
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=97.40 E-value=0.00046 Score=60.21 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=81.3
Q ss_pred cCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHH
Q 009883 50 QSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTID 129 (523)
Q Consensus 50 Q~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~~Sld 129 (523)
|.+..-||+|+++|+++-.|++-+.. .+...+ .+.+.|+|+.++...|+..|++++.++. +++
T Consensus 8 ~~~~~dcglacLa~i~~~~g~~~s~~----------~L~~~~----~~~~~g~s~~~l~~aa~~~Gl~a~~~~~---~~~ 70 (142)
T 3zua_A 8 SCHKIDYGLYALEILAQYHNVSVNPE----------EIKHRF----DTDGTGLGLTSWLLAAKSLELKVKQVKK---TID 70 (142)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCCCCHH----------HHHHHT----CTTSSCCCHHHHHHHHHTTTEEEEEEEC---CHH
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCHH----------HHHHHc----CCCcCCcCHHHHHHHHHHCCCeeEEeec---CHH
Confidence 56667899999999999998654331 111111 1346899999999999999999999885 455
Q ss_pred HHHHHHHHhhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009883 130 DFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (523)
Q Consensus 130 eFR~~v~~~~ss~d~~vIVNY~R~~LgQtGgGHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (523)
++.+ -.-..|+.. .++.||- |.+++.+.+.++|.|++.-+ +.+++.++|-+.-
T Consensus 71 ~L~~--------l~lP~Il~~-------~~g~~~V-v~~~~~~~~~~~I~dP~~g~--~~~~s~~ef~~~w 123 (142)
T 3zua_A 71 RLNF--------ISLPALVWR-------EDGRHFI-LTKVSKEANRYLIFDLEQRN--PRVLEQSEFEALY 123 (142)
T ss_dssp HHTT--------SSSSEEECC-------TTSCCEE-EEEEETTTTEEEEEETTTTE--EEEEEHHHHHHHC
T ss_pred HHhc--------CCCCEEEEE-------cCCCEEE-EEEEeCCCCEEEEEcCCCCC--cEEecHHHHHhhC
Confidence 4432 233566632 2334665 45688777899999986522 8999999986654
No 5
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=96.98 E-value=0.0094 Score=58.15 Aligned_cols=148 Identities=21% Similarity=0.151 Sum_probs=90.8
Q ss_pred cccccccccccccCC--CccccHHHHHHHHHhccCCCCCC-----c-CC----------CccccccchhccccchHHHhh
Q 009883 38 EGFYRLISYFQTQSE--PAYCGLASLSMVLNALAIDPGRK-----W-KG----------PWRWFDESMLDCCEPLEKVKE 99 (523)
Q Consensus 38 e~ff~La~qF~TQ~n--pAyCGvASlamVLNAL~iDP~r~-----w-kg----------pwRwf~E~mLdcc~~le~Vk~ 99 (523)
+.+.-|.--|..|.. +.-|++|||+|+|+..|++.... + +- |.+=|--++... .-..
T Consensus 30 ~~~~ll~Vp~~~Q~~~~~~gCe~tSlam~L~y~G~~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~-----~~~g 104 (236)
T 3erv_A 30 EKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTF-----SESG 104 (236)
T ss_dssp CCEECTTSCCCCCTTTCTTCHHHHHHHHHHHHTTCCCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCT-----TSCB
T ss_pred CceEEeCCCccccCCCCCCCCHHHHHHHHHHHcCcCCCHHHHHHHHhhCcccccCCCCCCccCccCCcccc-----CCCc
Confidence 344445555556664 68899999999999999874321 1 11 222222222110 0112
Q ss_pred cCCCHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHHhhcCCCceEEEEeec--ccc------------cc---cCCc
Q 009883 100 KGISFGKLVCLAHCAG-AKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHR--GAF------------KQ---TGTG 161 (523)
Q Consensus 100 ~GiTL~Ela~LA~c~G-~~V~~yra~~~SldeFR~~v~~~~ss~d~~vIVNY~R--~~L------------gQ---tGgG 161 (523)
.|+--..|..+|+..+ .. ++.-...+++++.+.|. .+..|||-... +.+ |. +..+
T Consensus 105 ~giy~~~i~~~a~~y~~~~--~~dltG~sl~~L~~~I~-----~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~ 177 (236)
T 3erv_A 105 YGVYHGPLFQLAKKYLPNK--AVDLTGKSIEELYKSVK-----AGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNE 177 (236)
T ss_dssp CCCCHHHHHHHHHHHCTTT--EEECTTSCHHHHHHHHH-----TTCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTE
T ss_pred ceeecHHHHHHHHHHhhcc--eeecCCCCHHHHHHHHH-----CCCeEEEEEeCCcccccccccceeecCCCceeeccCC
Confidence 4666678899998875 23 33334568888887774 45677773221 111 10 2467
Q ss_pred cccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009883 162 HFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (523)
Q Consensus 162 HFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (523)
||--|-|||. +.|.|.|++.- ...++++.+++-++-
T Consensus 178 H~VVl~GYd~--~~vyi~DP~~g-~~~~~vs~~eFe~~w 213 (236)
T 3erv_A 178 HCVVLIGYDQ--ESVYIRDPLKD-SLDVKVPREKFEQAW 213 (236)
T ss_dssp EEEEEEEECS--SEEEEECTTSC-CSCCEEEHHHHHHHH
T ss_pred eEEEEEEEeC--CEEEEECCCCC-CccEEEcHHHHHHHH
Confidence 9999999998 69999999763 245889977755443
No 6
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=68.49 E-value=27 Score=33.01 Aligned_cols=114 Identities=13% Similarity=0.177 Sum_probs=82.1
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 009883 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (523)
Q Consensus 45 ~qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc---~~le~Vk~~GiTL~Ela~LA~c~G~~V~~y 121 (523)
.-.+||-+...|.==+++.+||++.-- -...-++|+..- .+.+.....|+|.+|+-..++..|..++ +
T Consensus 13 ~I~ETQg~~pWCa~Ya~aailN~~~~~--------~~~~A~~imr~~yPn~S~~~l~~~~~t~~e~iky~~s~g~~~~-~ 83 (174)
T 1cv8_A 13 KIRETQGNNGWCAGYTMSALLNATYNT--------NKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQ-L 83 (174)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHHTC--------CCCCHHHHHHHHCSSCCHHHHHHCCCCHHHHHHHHHHTTCCCE-E
T ss_pred EEeeccCCCchHHHHHHHHHHHhhhcc--------CcCCHHHHHHHHCCCCCHHHHhhcCCCHHHHHHHHHHcCCChh-h
Confidence 346799999999999999999999621 112234555322 2345677899999999999999987554 4
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 009883 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGYHAGR 173 (523)
Q Consensus 122 ra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~~LgQt--GgGHFSPIGGYh~~t 173 (523)
...-.|+++..+.+. +++.+.++=+|-. .++ -.||=--|.||-...
T Consensus 84 ~n~~ls~~eV~~~~~-----~nk~i~i~~~~ve-~~~~~~~gHAlav~Gy~~~~ 131 (174)
T 1cv8_A 84 LNRMTTYNEVDNLTK-----NNKGIAILGSRVE-SRNGMHAGHAMAVVGNAKLN 131 (174)
T ss_dssp ESSCCCHHHHHHHHH-----TTCCEEEEEEESS-CBTTBCCEEEEEEEEEEEET
T ss_pred hcCCCCHHHHHHHHh-----cCCceEEEccccc-CCCCCCCceeEEEEeeeeec
Confidence 455689999887764 5566777777763 344 478988888998754
No 7
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=60.22 E-value=36 Score=35.49 Aligned_cols=111 Identities=9% Similarity=0.146 Sum_probs=80.2
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 009883 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (523)
Q Consensus 45 ~qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc---~~le~Vk~~GiTL~Ela~LA~c~G~~V~~y 121 (523)
.-.+||-+..+|.=-+++.+||++.-- -.+.-+.|+..- .+.+.....|++++|.-..++..|..++ +
T Consensus 198 ~I~ETQg~~pWCa~Ya~aailN~~~~t--------~~~nA~~iMr~~yPN~S~~~l~~ts~~~~q~Iky~qsyG~~~~-~ 268 (367)
T 1x9y_A 198 KIREQQFDNSWCAGFSMAALLNATKNT--------DTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIH-Y 268 (367)
T ss_dssp CCCCCCSSSSCHHHHHHHHHHHHHTTC--------SCCCHHHHHHHHCTTSCTTTGGGCCCCHHHHHHHHHHTTEEEE-E
T ss_pred EeeeccCCCchHHHHHHHHHHHhhhcc--------CcCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHhCcchh-h
Confidence 456799999999999999999999621 122334454321 2234566799999999999999998765 4
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCceEEEEeeccccccc--CCcccccccee
Q 009883 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGY 169 (523)
Q Consensus 122 ra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~~LgQt--GgGHFSPIGGY 169 (523)
.....++++..+.+. .++.++|.-++..=... -.||---|.||
T Consensus 269 ~n~~ls~deVk~~id-----~Nk~I~v~~~~v~~~~n~~~~gHAlavvGy 313 (367)
T 1x9y_A 269 QEGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGN 313 (367)
T ss_dssp EESCCCHHHHHHHHH-----TTCCEEEEEEETTSCSSSCCCSEEEEEEEE
T ss_pred hcCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEec
Confidence 556689999887775 44678887777422333 37898888899
No 8
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=55.22 E-value=31 Score=32.88 Aligned_cols=114 Identities=8% Similarity=0.088 Sum_probs=80.0
Q ss_pred cccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEEe
Q 009883 46 YFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAFR 122 (523)
Q Consensus 46 qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc---~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yr 122 (523)
-.+||-+...|.=-+++.+||+..-- + .+.-++|+..- .+.+.....|+|.+|.-..++..|...+. .
T Consensus 23 I~ETQg~~~WCa~Y~~aAilN~~~nt-~-------~~nA~~iMr~~yPN~s~~~l~~t~~~~~q~Iky~~s~G~~~~~-~ 93 (183)
T 1pxv_A 23 IREQQFDNSWAAGFSMAALLNATKNT-D-------TYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHY-Q 93 (183)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHTC-S-------CCCHHHHHHHHSTTSCTTTGGGCCBCHHHHHHHHHHTTCCCEE-E
T ss_pred eeeccCcCchHHHHHHHHHHHhhhcc-C-------cCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHcCcChhH-h
Confidence 45799999999999999999999621 1 11223333221 12245677999999999999999987654 3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 009883 123 TNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGYHAGR 173 (523)
Q Consensus 123 a~~~SldeFR~~v~~~~ss~d~~vIVNY~R~~LgQt--GgGHFSPIGGYh~~t 173 (523)
....|+++..+.+. .++.+.+.=++..=.++ -.||---|.||-...
T Consensus 94 nr~ls~neV~~~i~-----~Nk~I~v~~~~v~e~~~~~~~gHA~av~Gya~~~ 141 (183)
T 1pxv_A 94 EGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGNAKIN 141 (183)
T ss_dssp ESCCCHHHHHHHHH-----TTCCEEEEEECCCSSTTSCCCEEEEEEEEEEEET
T ss_pred cCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEeeeecC
Confidence 44689999888875 45566666666433444 378988888987655
No 9
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=30.62 E-value=32 Score=27.18 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHHHHHHhccC-CCCCCcCCCccccccchhccccchHHHh-hcCCCHHHHHHHHHHc
Q 009883 59 ASLSMVLNALAI-DPGRKWKGPWRWFDESMLDCCEPLEKVK-EKGISFGKLVCLAHCA 114 (523)
Q Consensus 59 ASlamVLNAL~i-DP~r~wkgpwRwf~E~mLdcc~~le~Vk-~~GiTL~Ela~LA~c~ 114 (523)
.|+..--.-.++ .|.+.-.+.+|+|++.-+..-.-+...+ +.|++++|+..++...
T Consensus 20 ~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 20 ATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp HHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 344443333233 4555532668999876665444445567 8999999999887654
No 10
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.56 E-value=44 Score=29.54 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.2
Q ss_pred CCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009883 77 KGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (523)
Q Consensus 77 kgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (523)
.+.+|+|++.-+..-.-+...+..|++++++..++..
T Consensus 35 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 35 ESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp TTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5779999986665444445568899999999988764
No 11
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=26.97 E-value=4.1e+02 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHhh--cCCCceEEEEeecc
Q 009883 106 KLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCS--ASEDCHVISSYHRG 153 (523)
Q Consensus 106 Ela~LA~c~G~~V~~yra~~~SldeFR~~v~~~~--ss~d~~vIVNY~R~ 153 (523)
.++.+++..|..|.....++.+.+.+++.+.... ..+++.+++.|+.-
T Consensus 35 ~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSGH 84 (285)
T 3bij_A 35 DMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSGH 84 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEESC
T ss_pred HHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence 3455566779887666655678888887776543 24678999999753
No 12
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=26.60 E-value=2.5e+02 Score=28.80 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=50.6
Q ss_pred CCCccccccchhccccchHHHhhc-CCC-------------------HHHHHHHHHHcCCeEEEEeC-----C-------
Q 009883 77 KGPWRWFDESMLDCCEPLEKVKEK-GIS-------------------FGKLVCLAHCAGAKVEAFRT-----N------- 124 (523)
Q Consensus 77 kgpwRwf~E~mLdcc~~le~Vk~~-GiT-------------------L~Ela~LA~c~G~~V~~yra-----~------- 124 (523)
+--||||...- -+.++.+++. |.+ ..++..+++.+|+++.+... +
T Consensus 22 ~~~~rW~g~~d---~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~ 98 (386)
T 3bdk_A 22 KMSFRWYGKKD---PVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIPVHEDIKQGKPN 98 (386)
T ss_dssp CCCCBCCCTTC---SSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCTT
T ss_pred hcEEEecCCCC---HHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccccccCcHH
Confidence 34588886421 2245556665 543 23455667788998876531 1
Q ss_pred -CCCHHHHHHHHHHhhcCCCceEEEEee------ccccc-ccCCcc----c--cccceeecCC
Q 009883 125 -QSTIDDFRKYIIRCSASEDCHVISSYH------RGAFK-QTGTGH----F--SPIGGYHAGR 173 (523)
Q Consensus 125 -~~SldeFR~~v~~~~ss~d~~vIVNY~------R~~Lg-QtGgGH----F--SPIGGYh~~t 173 (523)
+..++.|++.|..+..-.-..|..||. |..+. ...+|. | +++++||+..
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~ 161 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCYNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVA 161 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCcccccccccccccccCCCccccccchhhhhcccchh
Confidence 124566777777654433335555765 54442 112332 3 5778887654
No 13
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=26.24 E-value=30 Score=28.84 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009883 71 DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (523)
Q Consensus 71 DP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (523)
.|.+.-.+.+|+|+++-+..-.-+...++.|++++++..++..
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 3444235678999876655333334567899999999998864
No 14
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.15 E-value=33 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=27.6
Q ss_pred CCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009883 77 KGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (523)
Q Consensus 77 kgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (523)
.+.+|+|++.-+..-.-+...+..|++++|+..++..
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 33 ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 5679999986665433344567899999999988864
No 15
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.47 E-value=35 Score=28.39 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=30.4
Q ss_pred ccC-CCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009883 68 LAI-DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (523)
Q Consensus 68 L~i-DP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (523)
.|. .|.+.-.+.+|+|++.-+..-.-+...+..|++++++..++..
T Consensus 25 ~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 25 IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 344 3444235678999876554333334457889999999988864
No 16
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=22.83 E-value=2e+02 Score=28.20 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC-------------CHHHHHHHHHHhhcCCCceEEEEee
Q 009883 104 FGKLVCLAHCAGAKVEAFRTNQS-------------TIDDFRKYIIRCSASEDCHVISSYH 151 (523)
Q Consensus 104 L~Ela~LA~c~G~~V~~yra~~~-------------SldeFR~~v~~~~ss~d~~vIVNY~ 151 (523)
+.++..+++.+|+++..+..... .++.+++.+..+..-.-..|++||.
T Consensus 57 ~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~n~~ 117 (367)
T 1tz9_A 57 IQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFK 117 (367)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34666777889999887653221 2455666666554433345666554
No 17
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.92 E-value=42 Score=29.73 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009883 72 PGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (523)
Q Consensus 72 P~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (523)
|...-.+.+|+|++.-+..-.-+...++.|++++++..++..
T Consensus 44 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 44 FLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp TCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 333335779999986665444445568899999999998864
No 18
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=20.51 E-value=39 Score=31.48 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCC----HHHHHHHHHHhhcCCCceEEEEeecccccccCCccccccc
Q 009883 105 GKLVCLAHCAGAKVEAFRTNQST----IDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIG 167 (523)
Q Consensus 105 ~Ela~LA~c~G~~V~~yra~~~S----ldeFR~~v~~~~ss~d~~vIVNY~R~~LgQtGgGHFSPIG 167 (523)
-||..+++..++.+.+|..+..+ +..| .....+..+.+.| .|++||++|-
T Consensus 105 iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f------~~~~~~~~I~L~Y-------~g~~HYdsl~ 158 (185)
T 3phx_A 105 LEASMLAKEMGITIIIWTVAASDEVEAGIKF------GDGDVFTAVNLLH-------SGQTHFDALR 158 (185)
T ss_dssp HHHHHHHHHHCCCEEEEEC--CCBCCEEEEE------SSCCTTTSEEEEE-------ETTTEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEecCCCCceEEEEc------CCCCCCCEEEEEE-------CCCcCchhce
Confidence 47889999999999888765332 1222 1112245677777 3668998774
No 19
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.38 E-value=76 Score=31.00 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=56.9
Q ss_pred HHHHHhccCCCCCCcCCCc-------ccccc---chhccccchHHHhhcC-CCHHHHHHHH-HHcCCeEEEEeCCCCCHH
Q 009883 62 SMVLNALAIDPGRKWKGPW-------RWFDE---SMLDCCEPLEKVKEKG-ISFGKLVCLA-HCAGAKVEAFRTNQSTID 129 (523)
Q Consensus 62 amVLNAL~iDP~r~wkgpw-------Rwf~E---~mLdcc~~le~Vk~~G-iTL~Ela~LA-~c~G~~V~~yra~~~Sld 129 (523)
.-.+.++||||-..-||-| .||-| .+.+.|...- -..-| |+|.++.|.. +..|... ...|-|
T Consensus 45 ~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr-~~nGGli~L~el~~~~~r~Rg~~~-----~~IS~d 118 (234)
T 3cuq_A 45 QDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALK-HRNGGLITLEELHQQVLKGRGKFA-----QDVSQD 118 (234)
T ss_dssp HHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHH-HHHSSEEEHHHHHHHHHHTTTTCC-----SSCCHH
T ss_pred HHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHH-HhcCCeeEHHHHHHHHHHhcCCcc-----CccCHH
Confidence 3457899999876666656 45554 4556665321 22223 7999999988 4456411 468999
Q ss_pred HHHHHHHHhhcCCCceEEEEeeccccccc
Q 009883 130 DFRKYIIRCSASEDCHVISSYHRGAFKQT 158 (523)
Q Consensus 130 eFR~~v~~~~ss~d~~vIVNY~R~~LgQt 158 (523)
+..+.++..-.=.+.+-|+.|..+.+-|.
T Consensus 119 Di~rAik~L~~LG~g~~v~~~~g~~~VqS 147 (234)
T 3cuq_A 119 DLIRAIKKLKALGTGFGIIPVGGTYLIQS 147 (234)
T ss_dssp HHHHHHHHHGGGBTTCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEECCEEEEEe
Confidence 99999986522123377777765445444
No 20
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.24 E-value=42 Score=30.08 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009883 71 DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (523)
Q Consensus 71 DP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (523)
.|.+. .+.+|+|++.-+..-.-+...+..|++++++..++..
T Consensus 38 ~p~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 38 TSIRN-SGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_dssp CCEEC-TTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC
T ss_pred CcccC-CCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 35444 4668999986665433344567899999999988864
Done!