Query 009885
Match_columns 523
No_of_seqs 175 out of 417
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ki9_A Cannabinoid receptor 2; 53.3 2.3 8E-05 28.5 -0.4 21 216-236 3-23 (33)
2 4grv_A Neurotensin receptor ty 26.8 32 0.0011 35.7 2.8 23 214-236 404-426 (510)
3 2wyt_A Superoxide dismutase [C 15.5 31 0.0011 31.3 -0.1 12 352-363 42-53 (153)
4 2q2l_A Superoxide dismutase; S 15.0 33 0.0011 31.2 -0.1 12 352-363 41-52 (152)
5 1eqw_A Cu,Zn superoxide dismut 14.7 36 0.0012 31.1 0.0 11 352-362 44-54 (156)
6 3vw7_A Proteinase-activated re 14.7 76 0.0026 31.6 2.5 23 215-237 386-408 (484)
7 2rh1_A Beta-2-adrenergic recep 14.7 84 0.0029 32.2 2.8 23 215-237 404-426 (500)
8 1f1g_A Cuznsod, copper-zinc su 14.6 34 0.0012 31.1 -0.1 12 352-363 43-54 (154)
9 1eso_A SOD, Cu, Zn superoxide 14.5 37 0.0013 30.9 0.0 11 352-362 44-54 (154)
10 1to4_A Superoxide dismutase; b 14.5 35 0.0012 31.1 -0.1 12 352-363 44-55 (156)
No 1
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=53.34 E-value=2.3 Score=28.46 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhc
Q 009885 216 RLSVLGAVVVAVFAAAYGPFL 236 (523)
Q Consensus 216 ~l~~lg~~Vi~tf~~~f~PFi 236 (523)
|..+.-.+++++|++||.|+.
T Consensus 3 k~~k~l~~vv~~F~icW~P~~ 23 (33)
T 2ki9_A 3 RLAKTLGLVLAVLLICWFPVL 23 (33)
T ss_dssp SSSSHHHHHHHHHTTTSSHHH
T ss_pred hhhhhHHHHHHHHHHHHhHHH
Confidence 456677889999999999985
No 2
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=26.80 E-value=32 Score=35.67 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhc
Q 009885 214 FSRLSVLGAVVVAVFAAAYGPFL 236 (523)
Q Consensus 214 ~~~l~~lg~~Vi~tf~~~f~PFi 236 (523)
-+|..|..++|+++|++||+||.
T Consensus 404 erk~~k~L~iVv~~F~iCWlPf~ 426 (510)
T 4grv_A 404 LRHGVLVARAVVIAFVVCWLPYH 426 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999984
No 3
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ...
Probab=15.53 E-value=31 Score=31.35 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=10.1
Q ss_pred ccccccchhhHH
Q 009885 352 LFGWHVHEKASL 363 (523)
Q Consensus 352 LFg~hVHEKaIL 363 (523)
..||||||+...
T Consensus 42 ~hg~HIHe~gd~ 53 (153)
T 2wyt_A 42 LHGFHVHEFGDN 53 (153)
T ss_dssp EEEEEEESCCCC
T ss_pred ceeEEEecCCcC
Confidence 589999999854
No 4
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea}
Probab=15.01 E-value=33 Score=31.17 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=10.1
Q ss_pred ccccccchhhHH
Q 009885 352 LFGWHVHEKASL 363 (523)
Q Consensus 352 LFg~hVHEKaIL 363 (523)
..||||||+.-.
T Consensus 41 ~hg~HIHe~Gd~ 52 (152)
T 2q2l_A 41 LHGFHVHALGDT 52 (152)
T ss_dssp EEEEEEESCCCC
T ss_pred ceeEEEeecCcc
Confidence 589999999754
No 5
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Probab=14.75 E-value=36 Score=31.06 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=9.6
Q ss_pred ccccccchhhH
Q 009885 352 LFGWHVHEKAS 362 (523)
Q Consensus 352 LFg~hVHEKaI 362 (523)
..||||||+.-
T Consensus 44 ~hGfHIHe~Gd 54 (156)
T 1eqw_A 44 IHGFHVHTNPS 54 (156)
T ss_dssp EECEEEESSSC
T ss_pred ceeEEECCCCc
Confidence 58999999985
No 6
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=14.73 E-value=76 Score=31.64 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcc
Q 009885 215 SRLSVLGAVVVAVFAAAYGPFLY 237 (523)
Q Consensus 215 ~~l~~lg~~Vi~tf~~~f~PFi~ 237 (523)
+|..+.-++|+++|++||+|+..
T Consensus 386 ~r~~k~l~~v~~~F~icwlP~~i 408 (484)
T 3vw7_A 386 SRALFLSAAVFCIFIICFGPTNV 408 (484)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 68899999999999999999963
No 7
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=14.70 E-value=84 Score=32.17 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcc
Q 009885 215 SRLSVLGAVVVAVFAAAYGPFLY 237 (523)
Q Consensus 215 ~~l~~lg~~Vi~tf~~~f~PFi~ 237 (523)
+|..|.-++|+++|++||+||..
T Consensus 404 ~ka~ktl~ivv~~F~icWlP~~i 426 (500)
T 2rh1_A 404 HKALKTLGIIMGTFTLCWLPFFI 426 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999963
No 8
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Probab=14.64 E-value=34 Score=31.09 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=9.8
Q ss_pred ccccccchhhHH
Q 009885 352 LFGWHVHEKASL 363 (523)
Q Consensus 352 LFg~hVHEKaIL 363 (523)
..||||||+.-.
T Consensus 43 ~hg~HIHe~Gd~ 54 (154)
T 1f1g_A 43 ERGFHIHEFGDA 54 (154)
T ss_dssp EEEEEEESCCCC
T ss_pred eEeEEEecCCCC
Confidence 589999998753
No 9
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A
Probab=14.47 E-value=37 Score=30.91 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=9.6
Q ss_pred ccccccchhhH
Q 009885 352 LFGWHVHEKAS 362 (523)
Q Consensus 352 LFg~hVHEKaI 362 (523)
..||||||+.-
T Consensus 44 ~hGfHIHe~Gd 54 (154)
T 1eso_A 44 EHGFHIHAKGS 54 (154)
T ss_dssp EECEEEESSSC
T ss_pred cccEEEcCCCc
Confidence 58999999985
No 10
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A
Probab=14.47 E-value=35 Score=31.14 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=10.0
Q ss_pred ccccccchhhHH
Q 009885 352 LFGWHVHEKASL 363 (523)
Q Consensus 352 LFg~hVHEKaIL 363 (523)
..||||||+.-.
T Consensus 44 ~hg~HIHe~Gd~ 55 (156)
T 1to4_A 44 KHGFHVHEFGDT 55 (156)
T ss_dssp EEEEEEESCCCC
T ss_pred cEeEEEecCCCC
Confidence 589999999754
Done!