Query 009885
Match_columns 523
No_of_seqs 175 out of 417
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 15:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009885.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009885hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oala_ b.1.8.1 (A:) Cu,Zn sup 15.0 16 0.0012 31.0 0.0 11 352-362 41-51 (151)
2 d1eqwa_ b.1.8.1 (A:) Cu,Zn sup 14.4 17 0.0013 30.9 0.0 10 353-362 45-54 (155)
3 d2apsa_ b.1.8.1 (A:) Cu,Zn sup 14.0 18 0.0013 30.8 0.0 10 353-362 45-54 (155)
4 d1f1ga_ b.1.8.1 (A:) Cu,Zn sup 13.2 19 0.0014 30.4 -0.1 10 353-362 43-52 (153)
5 d1srda_ b.1.8.1 (A:) Cu,Zn sup 12.2 22 0.0016 30.1 0.0 9 353-361 43-51 (154)
6 d1esoa_ b.1.8.1 (A:) Cu,Zn sup 11.8 23 0.0017 30.1 0.0 11 353-363 45-55 (154)
7 d1xsoa_ b.1.8.1 (A:) Cu,Zn sup 11.6 22 0.0016 29.9 -0.1 10 353-362 41-50 (150)
8 d1do5a_ b.1.8.1 (A:) Copper ch 9.4 30 0.0022 29.1 -0.1 10 353-362 44-53 (154)
9 d1rh5b_ f.23.28.1 (B:) Preprot 8.4 59 0.0043 23.3 1.2 29 327-355 11-39 (56)
10 d1pzsa_ b.1.8.1 (A:) Cu,Zn sup 8.3 37 0.0027 29.3 0.0 10 353-362 44-53 (171)
No 1
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]}
Probab=15.00 E-value=16 Score=31.02 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.8
Q ss_pred ccccccchhhH
Q 009885 352 LFGWHVHEKAS 362 (523)
Q Consensus 352 LFg~hVHEKaI 362 (523)
.-||||||+--
T Consensus 41 ~Hg~HIHe~Gd 51 (151)
T d1oala_ 41 EHGFHIHQNGS 51 (151)
T ss_dssp EECEEEESSSC
T ss_pred ceeEEEecCCC
Confidence 36999999863
No 2
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]}
Probab=14.43 E-value=17 Score=30.89 Aligned_cols=10 Identities=50% Similarity=0.956 Sum_probs=8.5
Q ss_pred cccccchhhH
Q 009885 353 FGWHVHEKAS 362 (523)
Q Consensus 353 Fg~hVHEKaI 362 (523)
-||||||+--
T Consensus 45 Hg~HIHe~Gd 54 (155)
T d1eqwa_ 45 HGFHVHTNPS 54 (155)
T ss_dssp ECEEEESSSC
T ss_pred eeEEEccCCC
Confidence 5999999874
No 3
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=13.96 E-value=18 Score=30.84 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=8.4
Q ss_pred cccccchhhH
Q 009885 353 FGWHVHEKAS 362 (523)
Q Consensus 353 Fg~hVHEKaI 362 (523)
-||||||+.-
T Consensus 45 hg~HIHe~gd 54 (155)
T d2apsa_ 45 HGFHIHQNPS 54 (155)
T ss_dssp ECEEEESSSC
T ss_pred eeEEEcccCC
Confidence 5899999874
No 4
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.15 E-value=19 Score=30.45 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=8.3
Q ss_pred cccccchhhH
Q 009885 353 FGWHVHEKAS 362 (523)
Q Consensus 353 Fg~hVHEKaI 362 (523)
-||||||+-.
T Consensus 43 hg~HIHe~Gd 52 (153)
T d1f1ga_ 43 RGFHIHEFGD 52 (153)
T ss_dssp EEEEEESCCC
T ss_pred eeEEEeCCCC
Confidence 5899999863
No 5
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=12.18 E-value=22 Score=30.07 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=7.9
Q ss_pred cccccchhh
Q 009885 353 FGWHVHEKA 361 (523)
Q Consensus 353 Fg~hVHEKa 361 (523)
-||||||+-
T Consensus 43 hg~HIHe~G 51 (154)
T d1srda_ 43 HGFHLHEFG 51 (154)
T ss_dssp CCEEEESCC
T ss_pred eeEEEecCC
Confidence 699999985
No 6
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]}
Probab=11.81 E-value=23 Score=30.05 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=9.1
Q ss_pred cccccchhhHH
Q 009885 353 FGWHVHEKASL 363 (523)
Q Consensus 353 Fg~hVHEKaIL 363 (523)
.||||||.--+
T Consensus 45 hg~HIHe~Gdc 55 (154)
T d1esoa_ 45 HGFHIHAKGSC 55 (154)
T ss_dssp ECEEEESSSCC
T ss_pred ceEEEcCCCcC
Confidence 68999998754
No 7
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=11.64 E-value=22 Score=29.92 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=8.6
Q ss_pred cccccchhhH
Q 009885 353 FGWHVHEKAS 362 (523)
Q Consensus 353 Fg~hVHEKaI 362 (523)
-||||||+--
T Consensus 41 Hg~HIHe~Gd 50 (150)
T d1xsoa_ 41 HGFHIHVFGD 50 (150)
T ss_dssp EEEEEESCCC
T ss_pred eeEEEecCCC
Confidence 6999999963
No 8
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.40 E-value=30 Score=29.08 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=8.4
Q ss_pred cccccchhhH
Q 009885 353 FGWHVHEKAS 362 (523)
Q Consensus 353 Fg~hVHEKaI 362 (523)
.||||||+--
T Consensus 44 hg~HIHe~Gd 53 (154)
T d1do5a_ 44 HGLHVHQYGD 53 (154)
T ss_dssp EEEEEESCCC
T ss_pred eEEEEecCCc
Confidence 7999999863
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.36 E-value=59 Score=23.31 Aligned_cols=29 Identities=10% Similarity=-0.089 Sum_probs=24.2
Q ss_pred HHHHhcCCChhhHHHHHHHhhhhcccccc
Q 009885 327 FIKAWTNPQPRMVARWIAYAYTCGFLFGW 355 (523)
Q Consensus 327 l~~l~~~P~~~~F~~~l~~~slsfFLFg~ 355 (523)
+++.-++|+++-|......|+.++++-|+
T Consensus 11 vlk~~~KP~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 11 VWLVLKKPTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp HHHSEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566899999999999999999987664
No 10
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.27 E-value=37 Score=29.31 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=8.2
Q ss_pred cccccchhhH
Q 009885 353 FGWHVHEKAS 362 (523)
Q Consensus 353 Fg~hVHEKaI 362 (523)
=||||||+-=
T Consensus 44 HGfHIHe~Gd 53 (171)
T d1pzsa_ 44 HGLHIHQVGK 53 (171)
T ss_dssp ECEEEESSCC
T ss_pred eeEEEecCCc
Confidence 4899999873
Done!