Query 009888
Match_columns 523
No_of_seqs 154 out of 229
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uw4_A UPF3X; nonsense mediate 100.0 3.6E-36 1.2E-40 255.5 11.5 90 8-99 2-91 (91)
2 2l08_A Regulator of nonsense t 100.0 2.4E-35 8.2E-40 253.7 8.1 91 5-97 7-97 (97)
3 1x4c_A Splicing factor, argini 97.8 0.00019 6.4E-09 59.5 10.8 81 4-95 12-92 (108)
4 2e5h_A Zinc finger CCHC-type a 97.7 0.00021 7.3E-09 56.9 10.0 82 3-93 12-93 (94)
5 4fxv_A ELAV-like protein 1; RN 97.7 0.00021 7.3E-09 59.1 9.7 80 5-93 17-96 (99)
6 2dnz_A Probable RNA-binding pr 97.6 0.0007 2.4E-08 53.9 11.3 85 4-97 2-86 (95)
7 2dgt_A RNA-binding protein 30; 97.6 0.00029 1E-08 56.3 8.9 75 3-94 6-80 (92)
8 2div_A TRNA selenocysteine ass 97.6 0.00035 1.2E-08 56.2 9.1 92 3-99 5-97 (99)
9 1x5u_A Splicing factor 3B subu 97.5 0.00047 1.6E-08 56.1 9.6 85 3-96 11-95 (105)
10 2dnp_A RNA-binding protein 14; 97.5 0.00048 1.6E-08 54.8 9.1 77 3-96 5-81 (90)
11 2cq3_A RNA-binding protein 9; 97.5 0.0014 4.8E-08 53.2 12.0 85 4-99 12-96 (103)
12 3mdf_A Peptidyl-prolyl CIS-tra 97.5 0.00055 1.9E-08 53.3 9.0 81 4-93 4-84 (85)
13 2cqi_A Nucleolysin TIAR; RNA r 97.5 0.00076 2.6E-08 54.8 10.2 83 2-95 10-92 (103)
14 2do4_A Squamous cell carcinoma 97.5 0.00065 2.2E-08 54.9 9.7 81 3-93 13-93 (100)
15 2dnm_A SRP46 splicing factor; 97.5 0.0011 3.9E-08 53.7 11.1 85 4-97 10-94 (103)
16 2dgu_A Heterogeneous nuclear r 97.5 0.00082 2.8E-08 54.9 10.1 77 4-97 8-84 (103)
17 1x4e_A RNA binding motif, sing 97.5 0.00028 9.6E-09 55.3 7.0 74 3-80 1-74 (85)
18 1x5t_A Splicing factor 3B subu 97.5 0.0005 1.7E-08 54.9 8.6 82 4-94 2-84 (96)
19 2cqc_A Arginine/serine-rich sp 97.5 0.00044 1.5E-08 55.0 8.2 82 3-93 11-92 (95)
20 3bs9_A Nucleolysin TIA-1 isofo 97.5 0.00055 1.9E-08 53.6 8.6 81 4-93 3-83 (87)
21 1why_A Hypothetical protein ri 97.5 0.00055 1.9E-08 55.2 8.9 78 4-94 14-91 (97)
22 1whw_A Hypothetical protein ri 97.5 0.0011 3.9E-08 53.2 10.7 86 3-97 4-89 (99)
23 1x5s_A Cold-inducible RNA-bind 97.4 0.00063 2.2E-08 55.0 9.1 82 4-94 9-90 (102)
24 2fy1_A RNA-binding motif prote 97.4 0.0014 5E-08 55.3 11.7 87 1-97 1-87 (116)
25 2dgp_A Bruno-like 4, RNA bindi 97.4 0.00062 2.1E-08 55.4 9.0 87 3-95 9-95 (106)
26 2d9p_A Polyadenylate-binding p 97.4 0.0011 3.7E-08 53.9 10.3 83 3-96 11-93 (103)
27 2x1f_A MRNA 3'-END-processing 97.4 0.00082 2.8E-08 54.1 9.4 83 6-97 1-83 (96)
28 2dnq_A RNA-binding protein 4B; 97.4 0.00072 2.5E-08 53.8 9.0 77 3-96 4-80 (90)
29 2ywk_A Putative RNA-binding pr 97.4 0.00098 3.3E-08 53.1 9.7 81 3-93 12-92 (95)
30 2cph_A RNA binding motif prote 97.4 0.00084 2.9E-08 54.6 9.5 84 4-96 12-97 (107)
31 2dnh_A Bruno-like 5, RNA bindi 97.4 0.00095 3.2E-08 54.3 9.7 86 4-96 12-97 (105)
32 1x4a_A Splicing factor, argini 97.4 0.0012 4.2E-08 54.2 10.4 81 4-96 19-99 (109)
33 1x5o_A RNA binding motif, sing 97.4 0.001 3.5E-08 55.0 10.0 86 4-94 22-110 (114)
34 1h2v_Z 20 kDa nuclear CAP bind 97.4 0.00092 3.1E-08 58.5 9.9 82 4-94 36-117 (156)
35 2dgo_A Cytotoxic granule-assoc 97.4 0.0013 4.3E-08 54.5 10.2 86 3-97 11-96 (115)
36 3ex7_B RNA-binding protein 8A; 97.4 0.00094 3.2E-08 56.1 9.5 87 4-99 19-105 (126)
37 2cqb_A Peptidyl-prolyl CIS-tra 97.4 0.0013 4.5E-08 53.1 9.9 85 4-97 9-93 (102)
38 2cqd_A RNA-binding region cont 97.4 0.0014 4.8E-08 54.4 10.4 89 3-101 13-101 (116)
39 2dgs_A DAZ-associated protein 97.3 0.0016 5.4E-08 52.5 10.4 83 3-95 6-88 (99)
40 2lkz_A RNA-binding protein 5; 97.3 0.00094 3.2E-08 55.5 9.2 84 4-93 6-92 (95)
41 2cq0_A Eukaryotic translation 97.3 0.0012 4E-08 53.7 9.6 85 3-96 11-95 (103)
42 3ulh_A THO complex subunit 4; 97.3 0.0013 4.4E-08 53.6 9.9 81 4-94 26-106 (107)
43 2do0_A HnRNP M, heterogeneous 97.3 0.0016 5.6E-08 53.6 10.5 84 3-96 11-94 (114)
44 2cpd_A Apobec-1 stimulating pr 97.3 0.00097 3.3E-08 53.9 8.8 76 4-94 12-87 (99)
45 1x4h_A RNA-binding protein 28; 97.3 0.0012 4.1E-08 54.0 9.1 83 3-94 11-99 (111)
46 2dng_A Eukaryotic translation 97.3 0.001 3.6E-08 54.1 8.6 82 3-95 11-92 (103)
47 2cpj_A Non-POU domain-containi 97.3 0.0013 4.4E-08 53.2 9.0 78 3-95 11-88 (99)
48 1b7f_A Protein (SXL-lethal pro 97.3 0.0011 3.6E-08 56.8 8.9 82 5-93 87-168 (168)
49 3md1_A Nuclear and cytoplasmic 97.2 0.0016 5.3E-08 50.5 8.9 77 8-93 2-78 (83)
50 2la6_A RNA-binding protein FUS 97.2 0.0011 3.8E-08 53.6 8.4 82 3-93 9-98 (99)
51 2jrs_A RNA-binding protein 39; 97.2 0.00077 2.6E-08 56.3 7.5 83 2-93 21-103 (108)
52 2cpz_A CUG triplet repeat RNA- 97.2 0.0012 4.3E-08 54.7 8.8 82 4-94 22-103 (115)
53 2lxi_A RNA-binding protein 10; 97.2 0.00076 2.6E-08 54.7 7.3 80 8-94 2-81 (91)
54 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.2 0.0012 4.2E-08 55.8 8.9 81 4-93 60-140 (140)
55 2dh8_A DAZ-associated protein 97.2 0.0011 3.8E-08 54.0 8.1 83 2-94 11-93 (105)
56 1wi8_A EIF-4B, eukaryotic tran 97.2 0.0022 7.6E-08 52.2 9.9 81 4-94 12-92 (104)
57 1x4g_A Nucleolysin TIAR; struc 97.2 0.0025 8.4E-08 52.5 10.0 79 4-97 22-100 (109)
58 2jvo_A Nucleolar protein 3; nu 97.2 0.0016 5.4E-08 54.5 8.9 74 3-93 27-100 (108)
59 1oo0_B CG8781-PA, drosophila Y 97.2 0.0026 8.7E-08 52.2 10.0 81 5-94 24-104 (110)
60 1p27_B RNA-binding protein 8A; 97.2 0.0015 5.1E-08 53.2 8.5 81 5-94 21-101 (106)
61 3lqv_A PRE-mRNA branch site pr 97.2 0.0023 8E-08 52.9 9.6 80 3-94 4-83 (115)
62 2kt5_A RNA and export factor-b 97.1 0.0029 9.8E-08 53.3 10.2 87 4-100 32-118 (124)
63 1fxl_A Paraneoplastic encephal 97.1 0.0017 5.9E-08 55.1 8.8 81 6-93 87-167 (167)
64 1whx_A Hypothetical protein ri 97.1 0.0021 7.3E-08 53.8 9.3 77 6-97 9-85 (111)
65 2khc_A Testis-specific RNP-typ 97.1 0.0022 7.5E-08 53.3 9.2 81 4-93 37-117 (118)
66 2cpe_A RNA-binding protein EWS 97.1 0.0019 6.4E-08 53.3 8.6 82 4-94 12-101 (113)
67 2e44_A Insulin-like growth fac 97.1 0.0017 5.9E-08 51.9 8.1 80 4-95 12-91 (96)
68 2dgv_A HnRNP M, heterogeneous 97.1 0.002 6.7E-08 51.0 8.3 82 3-95 4-85 (92)
69 2kvi_A Nuclear polyadenylated 97.1 0.0021 7E-08 52.0 8.5 81 2-99 5-86 (96)
70 2kxn_B Transformer-2 protein h 97.1 0.0017 5.7E-08 56.2 8.2 82 3-93 42-123 (129)
71 1b7f_A Protein (SXL-lethal pro 97.1 0.0028 9.7E-08 54.1 9.5 83 5-96 1-83 (168)
72 1fxl_A Paraneoplastic encephal 97.1 0.0016 5.4E-08 55.3 7.8 80 7-95 2-81 (167)
73 3s8s_A Histone-lysine N-methyl 97.0 0.0023 8E-08 54.0 8.7 83 4-95 3-85 (110)
74 3beg_B Splicing factor, argini 97.0 0.0019 6.4E-08 54.4 8.0 78 5-93 14-91 (115)
75 1wg1_A KIAA1579 protein, homol 97.0 0.0019 6.5E-08 51.4 7.6 78 5-98 3-80 (88)
76 2fc8_A NCL protein; structure 97.0 0.0018 6.3E-08 52.3 7.5 79 4-94 12-90 (102)
77 2xnq_A Nuclear polyadenylated 97.0 0.0043 1.5E-07 50.7 9.8 74 3-93 18-92 (97)
78 2ytc_A PRE-mRNA-splicing facto 97.0 0.0028 9.4E-08 49.5 8.2 75 4-93 9-84 (85)
79 4f25_A Polyadenylate-binding p 97.0 0.0016 5.4E-08 54.7 7.2 80 4-94 2-81 (115)
80 1u6f_A Tcubp1, RNA-binding pro 97.0 0.0026 8.8E-08 54.3 8.6 83 4-95 39-121 (139)
81 3md3_A Nuclear and cytoplasmic 97.0 0.0057 1.9E-07 51.8 10.6 81 4-93 84-164 (166)
82 2dgx_A KIAA0430 protein; RRM d 97.0 0.0048 1.6E-07 49.9 9.7 79 4-94 6-88 (96)
83 3nmr_A Cugbp ELAV-like family 97.0 0.0021 7E-08 55.2 7.8 76 6-83 2-77 (175)
84 3ucg_A Polyadenylate-binding p 97.0 0.0032 1.1E-07 49.4 8.2 77 7-93 6-82 (89)
85 2cq4_A RNA binding motif prote 96.9 0.007 2.4E-07 50.0 10.4 77 7-93 25-101 (114)
86 2dgw_A Probable RNA-binding pr 96.9 0.0031 1.1E-07 50.0 7.8 80 3-94 6-85 (91)
87 1wf1_A RNA-binding protein RAL 96.9 0.0068 2.3E-07 49.9 10.2 76 5-97 25-101 (110)
88 2kn4_A Immunoglobulin G-bindin 96.9 0.0062 2.1E-07 52.9 10.3 85 4-97 67-151 (158)
89 2hvz_A Splicing factor, argini 96.9 0.0021 7.3E-08 51.9 6.9 75 8-96 1-75 (101)
90 2err_A Ataxin-2-binding protei 96.9 0.0048 1.6E-07 51.3 9.1 79 4-93 26-104 (109)
91 2mss_A Protein (musashi1); RNA 96.9 0.0019 6.6E-08 49.4 6.2 67 9-80 1-67 (75)
92 2la4_A Nuclear and cytoplasmic 96.9 0.0039 1.3E-07 50.4 8.3 66 4-79 24-89 (101)
93 1rk8_A CG8781-PA, CG8781-PA pr 96.9 0.0048 1.6E-07 54.8 9.4 82 5-95 70-151 (165)
94 2g4b_A Splicing factor U2AF 65 96.8 0.0058 2E-07 52.5 9.5 80 5-93 92-171 (172)
95 2dhg_A TRNA selenocysteine ass 96.8 0.0048 1.6E-07 50.0 8.5 82 3-93 5-87 (104)
96 1p1t_A Cleavage stimulation fa 96.8 0.0019 6.4E-08 52.3 5.9 81 6-95 7-87 (104)
97 1wex_A Hypothetical protein (r 96.8 0.0097 3.3E-07 50.1 10.5 82 4-99 12-94 (104)
98 1nu4_A U1A RNA binding domain; 96.8 0.0026 8.9E-08 50.8 6.6 81 3-95 4-88 (97)
99 2fc9_A NCL protein; structure 96.8 0.0084 2.9E-07 48.4 9.5 80 4-96 12-91 (101)
100 4a8x_A RNA-binding protein wit 96.8 0.0026 9E-08 49.6 6.2 80 6-93 3-82 (88)
101 2dis_A Unnamed protein product 96.8 0.008 2.7E-07 49.1 9.3 90 3-99 4-95 (109)
102 2cpf_A RNA binding motif prote 96.7 0.0033 1.1E-07 50.4 6.9 85 5-96 3-88 (98)
103 2lea_A Serine/arginine-rich sp 96.7 0.0036 1.2E-07 54.4 7.5 88 4-100 44-131 (135)
104 1fjc_A Nucleolin RBD2, protein 96.7 0.0025 8.7E-08 50.9 6.1 77 3-93 12-88 (96)
105 2cqh_A IGF-II mRNA-binding pro 96.7 0.0047 1.6E-07 49.2 7.6 77 3-94 4-81 (93)
106 2cqp_A RNA-binding protein 12; 96.7 0.0083 2.8E-07 48.0 9.1 81 4-94 12-93 (98)
107 2qfj_A FBP-interacting repress 96.7 0.0053 1.8E-07 54.6 8.7 70 7-80 28-97 (216)
108 2jvr_A Nucleolar protein 3; RN 96.7 0.0034 1.2E-07 53.8 7.0 81 2-94 23-103 (111)
109 2cpx_A Hypothetical protein FL 96.7 0.0094 3.2E-07 49.1 9.5 83 4-97 22-106 (115)
110 2cpi_A CCR4-NOT transcription 96.7 0.0065 2.2E-07 50.5 8.5 84 4-94 12-99 (111)
111 2qfj_A FBP-interacting repress 96.7 0.0086 2.9E-07 53.3 9.8 85 6-99 124-208 (216)
112 2f3j_A RNA and export factor b 96.6 0.0064 2.2E-07 55.4 8.8 86 4-99 85-170 (177)
113 3nmr_A Cugbp ELAV-like family 96.6 0.0084 2.9E-07 51.3 9.1 82 5-93 93-174 (175)
114 2e5j_A Methenyltetrahydrofolat 96.6 0.0044 1.5E-07 50.0 6.9 75 5-93 17-91 (97)
115 3s7r_A Heterogeneous nuclear r 96.6 0.0063 2.2E-07 47.7 7.6 71 3-78 7-77 (87)
116 1x4b_A Heterogeneous nuclear r 96.6 0.0078 2.7E-07 49.9 8.4 78 7-94 27-104 (116)
117 2yh0_A Splicing factor U2AF 65 96.6 0.01 3.5E-07 52.1 9.6 80 5-93 112-191 (198)
118 2cpy_A RNA-binding protein 12; 96.6 0.0039 1.4E-07 52.1 6.5 80 4-94 12-92 (114)
119 2e5g_A U6 snRNA-specific termi 96.5 0.011 3.6E-07 47.4 8.4 75 5-94 6-80 (94)
120 2i2y_A Fusion protein consists 96.5 0.0075 2.6E-07 52.3 8.1 77 4-94 70-146 (150)
121 3md3_A Nuclear and cytoplasmic 96.5 0.02 7E-07 48.3 10.6 78 9-96 2-79 (166)
122 3pgw_A U1-A; protein-RNA compl 96.5 0.011 3.7E-07 55.6 9.7 75 6-93 206-280 (282)
123 2ek1_A RNA-binding protein 12; 96.5 0.0084 2.9E-07 47.6 7.5 80 4-93 12-92 (95)
124 2adc_A Polypyrimidine tract-bi 96.5 0.015 5.2E-07 53.7 10.3 81 4-98 31-112 (229)
125 2hzc_A Splicing factor U2AF 65 96.4 0.0091 3.1E-07 46.5 7.3 68 4-80 3-79 (87)
126 2cq1_A PTB-like protein L; RRM 96.4 0.02 6.9E-07 48.0 9.7 82 4-100 12-95 (101)
127 1sjq_A Polypyrimidine tract-bi 96.4 0.013 4.6E-07 50.3 8.8 83 3-100 12-96 (105)
128 3r27_A HnRNP L, heterogeneous 96.4 0.021 7.2E-07 48.7 9.8 81 4-98 18-99 (100)
129 3pgw_S U1-70K; protein-RNA com 96.4 0.011 3.9E-07 61.2 9.7 82 6-96 101-182 (437)
130 2j76_E EIF-4B, EIF4B, eukaryot 96.3 0.0072 2.5E-07 49.2 6.5 71 4-80 16-87 (100)
131 1fje_B Nucleolin RBD12, protei 96.3 0.012 4E-07 51.0 8.1 76 4-93 96-171 (175)
132 2a3j_A U1 small nuclear ribonu 96.3 0.01 3.4E-07 51.9 7.5 80 5-94 27-108 (127)
133 3q2s_C Cleavage and polyadenyl 96.3 0.0071 2.4E-07 57.3 7.0 81 6-93 67-147 (229)
134 1l3k_A Heterogeneous nuclear r 96.3 0.011 3.6E-07 51.9 7.6 82 3-94 9-90 (196)
135 1qm9_A Polypyrimidine tract-bi 96.2 0.022 7.4E-07 50.6 9.5 78 6-97 2-80 (198)
136 3p5t_L Cleavage and polyadenyl 96.2 0.0062 2.1E-07 48.6 5.4 72 7-80 1-72 (90)
137 2cq2_A Hypothetical protein LO 96.2 0.02 6.7E-07 49.9 9.0 80 5-94 23-104 (114)
138 1iqt_A AUF1, heterogeneous nuc 96.2 0.0071 2.4E-07 46.0 5.4 65 9-78 1-65 (75)
139 2ad9_A Polypyrimidine tract-bi 96.2 0.011 3.9E-07 51.5 7.3 82 4-99 28-110 (119)
140 1uaw_A Mouse-musashi-1; RNP-ty 96.2 0.0093 3.2E-07 45.5 5.9 66 8-78 1-66 (77)
141 2cqg_A TDP-43, TAR DNA-binding 96.2 0.027 9.2E-07 45.6 8.9 83 3-96 11-93 (103)
142 2cjk_A Nuclear polyadenylated 96.2 0.013 4.4E-07 50.1 7.4 63 6-72 2-64 (167)
143 2ki2_A SS-DNA binding protein 96.1 0.0075 2.6E-07 47.6 5.3 79 8-96 2-80 (90)
144 3pgw_A U1-A; protein-RNA compl 96.1 0.024 8.2E-07 53.2 9.7 81 3-93 5-87 (282)
145 1x4d_A Matrin 3; structural ge 96.1 0.023 7.7E-07 48.1 8.5 77 4-94 12-90 (102)
146 2rs2_A Musashi-1, RNA-binding 96.1 0.031 1.1E-06 46.4 9.2 82 3-94 21-102 (109)
147 1qm9_A Polypyrimidine tract-bi 96.1 0.016 5.4E-07 51.5 7.7 75 6-93 119-194 (198)
148 3egn_A RNA-binding protein 40; 96.0 0.036 1.2E-06 47.6 9.7 81 4-95 42-129 (143)
149 2adc_A Polypyrimidine tract-bi 96.0 0.022 7.4E-07 52.6 8.9 75 6-93 150-225 (229)
150 3n9u_C Cleavage and polyadenyl 96.0 0.015 5.2E-07 52.0 7.6 81 6-93 54-134 (156)
151 2dnl_A Cytoplasmic polyadenyla 96.0 0.018 6.3E-07 48.0 7.4 75 4-81 5-83 (114)
152 2jwn_A Embryonic polyadenylate 96.0 0.012 4E-07 49.3 6.2 78 7-94 36-113 (124)
153 1sjr_A Polypyrimidine tract-bi 95.9 0.018 6.3E-07 53.3 7.8 84 3-97 42-125 (164)
154 1fj7_A Nucleolin RBD1, protein 95.9 0.0029 1E-07 51.1 1.9 78 4-94 14-93 (101)
155 1s79_A Lupus LA protein; RRM, 95.8 0.028 9.4E-07 46.9 7.8 72 3-80 7-78 (103)
156 4f02_A Polyadenylate-binding p 95.8 0.024 8.2E-07 51.8 8.0 72 4-79 12-83 (213)
157 3smz_A Protein raver-1, ribonu 95.8 0.032 1.1E-06 52.4 8.9 73 6-94 21-93 (284)
158 2nlw_A Eukaryotic translation 95.7 0.033 1.1E-06 45.7 7.9 77 7-93 15-97 (105)
159 2db1_A Heterogeneous nuclear r 95.7 0.017 5.9E-07 48.8 6.2 71 4-78 14-85 (118)
160 1wg5_A Heterogeneous nuclear r 95.7 0.036 1.2E-06 45.4 7.8 69 4-78 12-81 (104)
161 1l3k_A Heterogeneous nuclear r 95.6 0.028 9.7E-07 49.2 7.4 81 6-96 103-183 (196)
162 3sde_A Paraspeckle component 1 95.6 0.037 1.3E-06 52.2 8.5 76 4-94 19-94 (261)
163 2lmi_A GRSF-1, G-rich sequence 95.5 0.019 6.5E-07 47.4 5.6 72 3-78 7-79 (107)
164 2xs2_A Deleted in azoospermia- 95.5 0.02 6.7E-07 46.3 5.6 67 5-78 7-73 (102)
165 3zzy_A Polypyrimidine tract-bi 95.5 0.098 3.4E-06 46.5 10.5 87 2-99 23-109 (130)
166 2m2b_A RNA-binding protein 10; 95.4 0.022 7.5E-07 48.6 5.9 79 5-93 21-105 (131)
167 2krb_A Eukaryotic translation 95.4 0.029 9.9E-07 43.7 6.0 67 8-80 2-74 (81)
168 2dnn_A RNA-binding protein 12; 95.4 0.031 1.1E-06 47.4 6.7 66 6-78 15-80 (109)
169 1wez_A HnRNP H', FTP-3, hetero 95.4 0.039 1.3E-06 45.6 7.1 70 3-79 11-80 (102)
170 3smz_A Protein raver-1, ribonu 95.4 0.078 2.7E-06 49.7 10.0 80 5-94 182-262 (284)
171 3tyt_A Heterogeneous nuclear r 95.3 0.053 1.8E-06 50.2 8.4 81 6-93 122-204 (205)
172 1x4f_A Matrin 3; structural ge 95.3 0.033 1.1E-06 48.2 6.5 77 4-94 22-100 (112)
173 3ns6_A Eukaryotic translation 95.2 0.02 6.8E-07 46.8 4.6 81 5-93 4-90 (100)
174 2ghp_A U4/U6 snRNA-associated 95.1 0.058 2E-06 50.8 8.3 83 5-96 115-197 (292)
175 2cjk_A Nuclear polyadenylated 95.1 0.038 1.3E-06 47.2 6.4 77 7-93 87-163 (167)
176 2ghp_A U4/U6 snRNA-associated 95.1 0.045 1.5E-06 51.6 7.5 82 3-96 37-118 (292)
177 1x5p_A Negative elongation fac 95.1 0.15 5.1E-06 40.9 9.5 76 3-95 11-86 (97)
178 1wel_A RNA-binding protein 12; 95.0 0.059 2E-06 45.4 7.3 79 4-93 22-101 (124)
179 2hgl_A HNRPF protein, heteroge 94.9 0.034 1.2E-06 49.1 5.7 71 4-78 41-112 (136)
180 2hgm_A HNRPF protein, heteroge 94.8 0.092 3.1E-06 46.0 8.2 69 4-78 39-108 (126)
181 3d2w_A TAR DNA-binding protein 94.8 0.16 5.5E-06 40.8 8.9 75 3-93 7-81 (89)
182 1owx_A Lupus LA protein, SS-B, 94.7 0.079 2.7E-06 46.9 7.4 60 5-74 16-77 (121)
183 2g4b_A Splicing factor U2AF 65 94.7 0.074 2.5E-06 45.6 7.0 75 6-94 3-86 (172)
184 1fje_B Nucleolin RBD12, protei 94.5 0.035 1.2E-06 48.0 4.7 80 3-96 9-91 (175)
185 2lcw_A RNA-binding protein FUS 93.5 0.0065 2.2E-07 50.5 0.0 82 4-94 4-93 (116)
186 2e5i_A Heterogeneous nuclear r 94.4 0.18 6.1E-06 44.2 9.0 81 4-97 22-103 (124)
187 4f02_A Polyadenylate-binding p 94.3 0.11 3.6E-06 47.5 7.6 76 7-93 103-178 (213)
188 2yh0_A Splicing factor U2AF 65 94.0 0.091 3.1E-06 46.0 6.3 74 6-93 3-85 (198)
189 3sde_A Paraspeckle component 1 93.8 0.24 8.3E-06 46.6 9.1 85 5-95 94-178 (261)
190 3tht_A Alkylated DNA repair pr 93.4 0.29 9.9E-06 49.9 9.7 80 4-93 15-96 (345)
191 1wf0_A TDP-43, TAR DNA-binding 93.3 0.14 4.7E-06 40.3 5.7 74 5-94 3-76 (88)
192 3tyt_A Heterogeneous nuclear r 93.3 0.45 1.5E-05 43.9 9.9 79 6-98 3-82 (205)
193 2dha_A FLJ20171 protein; RRM d 93.3 0.11 3.7E-06 45.1 5.4 70 5-78 21-92 (123)
194 2wbr_A GW182, gawky, LD47780P; 93.1 0.19 6.6E-06 42.6 6.4 64 7-80 7-70 (89)
195 2bz2_A Negative elongation fac 92.6 0.47 1.6E-05 40.4 8.3 77 3-96 35-111 (121)
196 2hgn_A Heterogeneous nuclear r 91.9 0.078 2.7E-06 47.1 2.7 68 4-78 43-110 (139)
197 3u1l_A PRE-mRNA-splicing facto 90.2 0.38 1.3E-05 46.8 5.9 82 5-96 132-229 (240)
198 2diu_A KIAA0430 protein; struc 89.3 0.99 3.4E-05 38.8 7.1 71 10-97 12-85 (96)
199 2dit_A HIV TAT specific factor 88.4 3.3 0.00011 34.1 9.7 78 3-93 11-99 (112)
200 2voo_A Lupus LA protein; RNA-b 87.3 1.8 6.1E-05 39.7 8.0 62 8-74 110-171 (193)
201 3v4m_A Splicing factor U2AF 65 86.7 1.9 6.3E-05 36.0 7.2 84 7-95 5-96 (105)
202 2pe8_A Splicing factor 45; RRM 85.4 8.9 0.00031 31.9 10.7 83 5-95 6-93 (105)
203 2dhx_A Poly (ADP-ribose) polym 80.7 4.4 0.00015 35.4 7.1 65 5-80 6-73 (104)
204 1jmt_A Splicing factor U2AF 35 78.2 1.4 4.9E-05 36.6 3.2 38 52-94 67-104 (104)
205 2j8a_A Histone-lysine N-methyl 71.2 12 0.0004 34.2 7.5 60 8-71 3-74 (136)
206 3ue2_A Poly(U)-binding-splicin 70.9 12 0.00041 32.0 7.2 83 6-95 19-108 (118)
207 3s6e_A RNA-binding protein 39; 51.2 52 0.0018 27.9 7.7 80 4-94 4-91 (114)
208 2xb2_G Regulator of nonsense t 48.2 7.4 0.00025 31.2 1.7 23 401-423 4-27 (60)
209 2d9o_A DNAJ (HSP40) homolog, s 36.3 1.1E+02 0.0038 25.2 7.2 62 17-94 27-88 (100)
210 2yh9_A Small protein A, BAME p 32.4 87 0.003 25.4 5.8 52 11-62 9-64 (88)
211 1wey_A Calcipressin 1; structu 31.9 37 0.0013 29.5 3.7 69 8-86 6-79 (104)
212 1ufw_A Synaptojanin 2; RNP dom 29.5 58 0.002 27.9 4.4 62 6-78 14-82 (95)
213 3gmx_B BLP; 2-layer alpha/beta 21.1 1.3E+02 0.0046 27.9 5.4 42 16-62 86-142 (154)
214 2dnr_A Synaptojanin-1; RRM dom 20.4 1.1E+02 0.0039 25.8 4.4 61 7-78 7-73 (91)
No 1
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=100.00 E-value=3.6e-36 Score=255.54 Aligned_cols=90 Identities=34% Similarity=0.649 Sum_probs=87.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
+|||||||||+|||++|+++|+++| .++|+||++|+++.++++||||||+|++.|+|.+|.+.|+|++|+|++|++++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7999999999999999999999987 58999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCC
Q 009888 88 AIVEYAPSQRVP 99 (523)
Q Consensus 88 A~VEfAPYQKvP 99 (523)
|+||||||||||
T Consensus 80 a~VE~AP~qkvP 91 (91)
T 1uw4_A 80 AIVEFAPFQKAA 91 (91)
T ss_dssp CEEEECSSCCC-
T ss_pred eEEEEcCCCcCc
Confidence 999999999997
No 2
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=253.73 Aligned_cols=91 Identities=33% Similarity=0.621 Sum_probs=87.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
-..+|||||||||+|||++|+++|+++|. ++|+||++|+++.++++||||||+|+++|+|.+|.+.|+|++|+|++|+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 34689999999999999999999999875 6999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeccCCC
Q 009888 85 QFKAIVEYAPSQR 97 (523)
Q Consensus 85 e~~A~VEfAPYQK 97 (523)
+++|+||||||||
T Consensus 85 ~~~a~VE~APyqK 97 (97)
T 2l08_A 85 EYPAVVEFAPFQK 97 (97)
T ss_dssp EEEEEEEECCCCC
T ss_pred EeeeEEEecCCCC
Confidence 9999999999997
No 3
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=0.00019 Score=59.51 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+....+|.|.+||+.+||+++.+.+..+ +.|.....+.. .-|||.|.+.+++...++.++++.|.+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT---------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC---------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 4567899999999999999999999875 34555444332 579999999999999999999999987676
Q ss_pred CeeeeEEEeccC
Q 009888 84 AQFKAIVEYAPS 95 (523)
Q Consensus 84 ne~~A~VEfAPY 95 (523)
......|++|--
T Consensus 81 ~~~~i~V~~a~~ 92 (108)
T 1x4c_A 81 ETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEEEEESSC
T ss_pred cceEEEEEeCCC
Confidence 667888998854
No 4
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.00021 Score=56.88 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+|++++.+.+... +.|........+...+ ...-|||.|.+.+++....+.++|+.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 85 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRK--SKGVAFILFLDKDSAQNCTRAINNKQLFG-- 85 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCC--CTTCEEEEESCHHHHHHHHHHTTTEEETT--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCC--cccEEEEEECCHHHHHHHHHHcCCCeeCC--
Confidence 35677899999999999999999999875 3465555544333221 12359999999999999999999988742
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|+||
T Consensus 86 ---~~l~v~~a 93 (94)
T 2e5h_A 86 ---RVIKASIA 93 (94)
T ss_dssp ---EEEEEEEC
T ss_pred ---cEEEEEec
Confidence 34566665
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.69 E-value=0.00021 Score=59.08 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.++++|.|++||+.+||+++.+.+... |.|.....+.-+.+.+ .-.-|||.|.+.+++....+.++|..|-+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~--~kG~afV~f~~~~~A~~Ai~~lng~~~~g---- 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGH--SLGYGFVNYVTAKDAERAINTLNGLRLQS---- 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCC--EEEEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCc--ccccEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 356899999999999999999999874 4565555543322221 12349999999999999999999998842
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..-.|+||
T Consensus 89 -r~l~V~~A 96 (99)
T 4fxv_A 89 -KTIKVSYA 96 (99)
T ss_dssp -EECEEEEC
T ss_pred -EEEEEEEe
Confidence 25677777
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.0007 Score=53.95 Aligned_cols=85 Identities=9% Similarity=0.116 Sum_probs=63.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+|++++.+.+... +.|........+.+.+ ...-|||.|.+.+++...++.++|+.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 74 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGR--SKGYGFITFSDSECARRALEQLNGFELAG--- 74 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCC--CCSEEEEEESCHHHHHHHHHHHTTCCSSS---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCc--eeeEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 5677899999999999999999999875 3455555544333221 23469999999999999999999988743
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|++|.-+.
T Consensus 75 --~~l~V~~a~~~~ 86 (95)
T 2dnz_A 75 --RPMRVGHVTERL 86 (95)
T ss_dssp --SCCEEEESSCCC
T ss_pred --cEEEEEEccccc
Confidence 356788875443
No 7
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=0.00029 Score=56.28 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+|++++.+.+... +.|.......| -|||.|.+.+++....+.++|+.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~----------~afV~f~~~~~a~~A~~~l~g~~~~g-- 71 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD----------YAFVHMERAEDAVEAIRGLDNTEFQG-- 71 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS----------EEEEEESCHHHHHHHHHHHTTEEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC----------EEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 35677899999999999999999999874 34655555543 79999999999999999999998842
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|+||-
T Consensus 72 ---~~l~V~~a~ 80 (92)
T 2dgt_A 72 ---KRMHVQLST 80 (92)
T ss_dssp ---EEEEEEESS
T ss_pred ---cEEEEEEcc
Confidence 467788884
No 8
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=0.00035 Score=56.25 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=65.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCcee-EEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvd-wfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
...+..+|.|.+||+.+||+++.+.+...- .|. ....+..+... ....-|||.|.+.+++....+.++|+.|.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMG--ETVMSVKIIRNRLTG--IPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTT--CCCCEEEEEECSSSC--CEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhC--CcceEEEEeecCCCC--CcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 356778999999999999999999998752 333 33333322221 1224599999999999999999999987544
Q ss_pred CCCeeeeEEEeccCCCCC
Q 009888 82 KGAQFKAIVEYAPSQRVP 99 (523)
Q Consensus 82 KGne~~A~VEfAPYQKvP 99 (523)
.. .-.-.|+||-.++.+
T Consensus 81 ~~-~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 81 TP-AKRFKLNYATYSGPS 97 (99)
T ss_dssp SS-CEECCEEETTCCSSS
T ss_pred Cc-ceeEEEeecCCCCCC
Confidence 32 223678988776654
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=0.00047 Score=56.10 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=63.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+|++++.+.+..+ +.|.....+..+... ....-|||.|.+.+++...++.++++.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVTG--QHQGYGFVEFLSEEDADYAIKIMDMIKLYG-- 84 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSC--SBCSCEEEEESSHHHHHHHHHHSSSCBCSS--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--cCCcEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 46678999999999999999999999875 356555544332221 122359999999999999999999988743
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|++|--.
T Consensus 85 ---~~l~v~~a~~~ 95 (105)
T 1x5u_A 85 ---KPIRVNKASAH 95 (105)
T ss_dssp ---CBCEEEETTTT
T ss_pred ---eEEEEEECCCC
Confidence 35678887443
No 10
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=0.00048 Score=54.84 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+|++++.+.+... +.|.......| .|||.|.+.+++...++.++|+.|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~----------~afV~f~~~~~a~~A~~~l~g~~~~g-- 70 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD----------YAFVHMEKEADAKAAIAQLNGKEVKG-- 70 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS----------CEEEEESCHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC----------EEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35677899999999999999999999875 34666555544 79999999999999999999988742
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|++|--+
T Consensus 71 ---~~l~v~~a~~~ 81 (90)
T 2dnp_A 71 ---KRINVELSTKG 81 (90)
T ss_dssp ---EECEEEESCCC
T ss_pred ---cEEEEEECCCC
Confidence 35678887543
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=0.0014 Score=53.23 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=64.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.... ..-.-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 82 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNER----GSKGFGFVTFENSADADRAREKLHGTVVEG--- 82 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTT----TTCCEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCC----CCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 5667899999999999999999999875 3565555543321 123479999999999999999999998743
Q ss_pred CeeeeEEEeccCCCCC
Q 009888 84 AQFKAIVEYAPSQRVP 99 (523)
Q Consensus 84 ne~~A~VEfAPYQKvP 99 (523)
....|++|--....
T Consensus 83 --~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 83 --RKIEVNNATARVMT 96 (103)
T ss_dssp --EECEEEECCSSCCC
T ss_pred --EEEEEEEcccCCCC
Confidence 35788887655433
No 12
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.50 E-value=0.00055 Score=53.35 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=59.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+... +.|.....+...... ....-|||.|.+.+++....+.++|+.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 76 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELFG--- 76 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCC--ccccEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4577899999999999999999999875 345544433221111 123459999999999999999999998832
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
....|+||
T Consensus 77 --~~l~v~~a 84 (85)
T 3mdf_A 77 --RTIRVNLA 84 (85)
T ss_dssp --EECEEEEC
T ss_pred --cEEEEEEc
Confidence 24556654
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.49 E-value=0.00076 Score=54.79 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=63.1
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
....+..+|.|.+||+.+||+++.+.+..+ +.|.....+.-... .-.-|||.|.+.+++...++.++++.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 81 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTS----NDPYCFVEFYEHRDAAAALAAMNGRKIL-- 81 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCS----SCCEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCC----CCCEEEEEECCHHHHHHHHHHhCCCCcC--
Confidence 456678999999999999999999999875 34554444433211 1347999999999999999999999874
Q ss_pred CCCeeeeEEEeccC
Q 009888 82 KGAQFKAIVEYAPS 95 (523)
Q Consensus 82 KGne~~A~VEfAPY 95 (523)
| ....|+||--
T Consensus 82 -g--~~l~V~~a~~ 92 (103)
T 2cqi_A 82 -G--KEVKVNWATT 92 (103)
T ss_dssp -T--EEEEEEECCC
T ss_pred -C--CeEEEEECCC
Confidence 2 3577888754
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00065 Score=54.91 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=61.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+|++++.+.+..+ +.|.....+..+ . .....-|||.|.+.+++...++.++|+.|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 85 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNR-A--GKPKGLAYVEYENESQASQAVMKMDGMTIKE-- 85 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-T--SCEEEEEEEEESSHHHHHHHHHHHTTEESSS--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-C--CCEEeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35667899999999999999999999875 345555554433 1 1123469999999999999999999988743
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|+||
T Consensus 86 ---~~l~v~~a 93 (100)
T 2do4_A 86 ---NIIKVAIS 93 (100)
T ss_dssp ---CEEEEEEC
T ss_pred ---EEEEEEEC
Confidence 24667776
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.0011 Score=53.73 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=64.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|.+||+.+||+++.+.+... +.|....+...+... ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 82 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTK--APRGFAFVRFHDRRDAQDAEAAMDGAELDG--- 82 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSC--SBCSCEEEEESSSSHHHHHHHHHSSCCBTT---
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCC--CCCeEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 356655544333221 123469999999999999999999998743
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|++|-..+
T Consensus 83 --~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 --RELRVQVARYGR 94 (103)
T ss_dssp --BCCEEEECSSCC
T ss_pred --cEEEEEECCcCC
Confidence 356888886544
No 16
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.47 E-value=0.00082 Score=54.89 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+..+ +.|.......| -|||.|.+.+++...++.++++.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~----------~afV~f~~~~~a~~A~~~l~g~~~~g--- 72 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD----------YAFIHFDERDGAVKAMEEMNGKDLEG--- 72 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEECSS----------CEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC----------EEEEEeCCHHHHHHHHHHHCCCccCC---
Confidence 3456899999999999999999999875 34555555443 69999999999999999999998642
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|+||--..
T Consensus 73 --~~l~v~~a~~~~ 84 (103)
T 2dgu_A 73 --ENIEIVFAKPPD 84 (103)
T ss_dssp --EEEEEEECCCCC
T ss_pred --CEEEEEEcCCCc
Confidence 367888885443
No 17
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.00028 Score=55.32 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=56.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
++.+..+|.|.+||+.+||+++.+.+... +.|.....+..+...+ .-.-|||.|.+.+++....+.++|+.|..
T Consensus 1 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 1 GSSGSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNK--CKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCS--CCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCC--cCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 35678899999999999999999888864 3565555544433221 12359999999999999999999987654
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.0005 Score=54.93 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEE-EeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWF-CFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwf-yFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+.+..+|.|++||+.+|++++.+.+..+- .|... .....+... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 75 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFG--VILQTPKIMRDPDTG--NSKGYAFINFASFDASDAAIEAMNGQYLCN-- 75 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTS--CBSSCCEECCCTTTC--SCCSEEEEEBSSHHHHHHHHHTTTTCEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEEcCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence 45678999999999999999999998752 33222 222221111 123469999999999999999999999732
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|+||-
T Consensus 76 ---~~l~v~~a~ 84 (96)
T 1x5t_A 76 ---RPITVSYAF 84 (96)
T ss_dssp ---EECEEEESC
T ss_pred ---EEEEEEEec
Confidence 356788874
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.00044 Score=54.96 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=60.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+|++++.+.+... +.|....++..+... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 84 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDG-- 84 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSS--SEEEEEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 46677899999999999999999999874 345544444322211 123469999999999999999999988732
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|+||
T Consensus 85 ---~~l~v~~a 92 (95)
T 2cqc_A 85 ---RRIRVSGP 92 (95)
T ss_dssp ---EEEEEECC
T ss_pred ---EEEEEEec
Confidence 34566665
No 20
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.46 E-value=0.00055 Score=53.59 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=58.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+|++++.+.+... +.|.....+..+... ....-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG--- 75 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 3467899999999999999999999875 345555544332221 123469999999999999999999988742
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
....|+||
T Consensus 76 --~~l~v~~a 83 (87)
T 3bs9_A 76 --RQIRTNWA 83 (87)
T ss_dssp --EECEEEEE
T ss_pred --eEEEEEec
Confidence 34566665
No 21
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00055 Score=55.18 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|.+||+.+||+++.+.+... +.|....+..+ ..-|||.|.+.+++...++.++++.|..
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~--- 80 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKG--------DSFAYIQYESLDAAQAACAKMRGFPLGG--- 80 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSS--------SCCEEEEESSHHHHHHHHHHHTTCBCSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCC--------CCEEEEEECCHHHHHHHHHHHCCCEeCC---
Confidence 4566899999999999999999999875 34665555544 2479999999999999999999998742
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
.-....|+||-
T Consensus 81 ~g~~l~V~~a~ 91 (97)
T 1why_A 81 PDRRLRVDFAK 91 (97)
T ss_dssp SSCBCEEEECC
T ss_pred CCcEEEEEECC
Confidence 11356777763
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.0011 Score=53.24 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
...+..+|.|++||+.+|++++.+.+..+ +.|........+... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 77 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTK--KPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-- 77 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTC--CCCSEEEEEESSHHHHHHHHHHTTTEESSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCC--CcCeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 45677899999999999999999999875 356554444332221 123469999999999999999999988753
Q ss_pred CCeeeeEEEeccCCC
Q 009888 83 GAQFKAIVEYAPSQR 97 (523)
Q Consensus 83 Gne~~A~VEfAPYQK 97 (523)
....|++|--++
T Consensus 78 ---~~l~V~~a~~~~ 89 (99)
T 1whw_A 78 ---RMLHVLPSTIKK 89 (99)
T ss_dssp ---CEEEEEECCCCS
T ss_pred ---cEEEEEEcCCCc
Confidence 356788875544
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.00063 Score=55.03 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=60.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++...... ....-|||.|.+.+++...++.++++.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 81 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQ--RSRGFGFVTFENIDDAKDAMMAMNGKSVDG--- 81 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSSC--SCCSEEEEECSSHHHHHHHHHHHTTCCTTS---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4567899999999999999999999875 245444444322211 123469999999999999999999998743
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 82 --~~l~v~~a~ 90 (102)
T 1x5s_A 82 --RQIRVDQAG 90 (102)
T ss_dssp --CCCEEEEEE
T ss_pred --eEEEEEECC
Confidence 346777774
No 24
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.44 E-value=0.0014 Score=55.27 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 1 mk~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
|-.+.+..+|.|.+||+.+|++++.+.+... +.|....+...+ .. ..-.-|||.|.+.+++...++.++|..|.+
T Consensus 1 m~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDR-TS--KSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CCTTCSCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECST-TT--TCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CC--CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6677888999999999999999999999875 345555555443 21 123579999999999999999999998843
Q ss_pred CCCCeeeeEEEeccCCC
Q 009888 81 EKGAQFKAIVEYAPSQR 97 (523)
Q Consensus 81 sKGne~~A~VEfAPYQK 97 (523)
....|++|--..
T Consensus 76 -----~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 -----KAIKVEQAKKPS 87 (116)
T ss_dssp -----SBCEEEECCCSS
T ss_pred -----EEEEEEECCCCC
Confidence 256788885443
No 25
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.43 E-value=0.00062 Score=55.44 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+||+++.+.+... +.|.....+..+.+.+ .-.-|||.|.+.+++...++.+++..|.+..
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGM--HKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCS--CCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCC--cceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 45677899999999999999999999875 3455544443322221 1246999999999999999999999876543
Q ss_pred CCeeeeEEEeccC
Q 009888 83 GAQFKAIVEYAPS 95 (523)
Q Consensus 83 Gne~~A~VEfAPY 95 (523)
| ....|+||--
T Consensus 85 g--~~l~v~~a~~ 95 (106)
T 2dgp_A 85 N--RPIQVKPADS 95 (106)
T ss_dssp S--SCCEEEECCC
T ss_pred C--ceEEEEECCc
Confidence 3 3567777743
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.43 E-value=0.0011 Score=53.91 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=62.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+|++++.+.+..+ +.|....++.. ......-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 82 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMME----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-- 82 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEEC----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC--
Confidence 35678999999999999999999998864 34554444432 11223469999999999999999999998832
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|+||--+
T Consensus 83 ---~~l~V~~a~~~ 93 (103)
T 2d9p_A 83 ---KPLYVALAQRK 93 (103)
T ss_dssp ---SBCEEEECSSC
T ss_pred ---cEEEEEEeccc
Confidence 35778887543
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.42 E-value=0.00082 Score=54.07 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=62.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+..+|.|++||+.+|++++.+.+... +.|........+.+. ....-|||.|.+.+++....+.++|+.|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 71 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTG--RSKGYAFIEFRDLESSASAVRNLNGYQLGS----- 71 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTC--CBCSEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 35789999999999999999999875 346555544332221 223469999999999999999999998743
Q ss_pred eeeEEEeccCCC
Q 009888 86 FKAIVEYAPSQR 97 (523)
Q Consensus 86 ~~A~VEfAPYQK 97 (523)
....|+||--..
T Consensus 72 ~~l~V~~a~~~~ 83 (96)
T 2x1f_A 72 RFLKCGYSSNSD 83 (96)
T ss_dssp EECEEEECSCSS
T ss_pred eEEEEEEcCCCC
Confidence 467788875443
No 28
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.00072 Score=53.78 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....... .-|||.|.+.+++....+.++++.|.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~----------g~afV~f~~~~~A~~A~~~l~g~~~~g~- 70 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDIIK----------NYGFVHIEDKTAAEDAIRNLHHYKLHGV- 70 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEET----------TEEEEEESSHHHHHHHHHHHTTCBCSSC-
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEC----------CEEEEEECCHHHHHHHHHHhcCCccCCc-
Confidence 45678999999999999999999999875 3465555552 2699999999999999999999887432
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
...|++|--+
T Consensus 71 ----~l~v~~a~~~ 80 (90)
T 2dnq_A 71 ----NINVEASKNK 80 (90)
T ss_dssp ----BCEEECSSCC
T ss_pred ----EEEEEECCCC
Confidence 4678877443
No 29
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.42 E-value=0.00098 Score=53.10 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+|++++.+.+... +.|........+. .....-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDRE---GKPKSFGFVCFKHPESVSYAIALLNGIRLYG-- 84 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT---SCEEEEEEEEESSTHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCC---CCCceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35567899999999999999999999875 3465555443321 1223469999999999999999999998742
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|+||
T Consensus 85 ---~~l~V~~a 92 (95)
T 2ywk_A 85 ---RPINVSGP 92 (95)
T ss_dssp ---EECEEECC
T ss_pred ---CEEEEEEc
Confidence 34566665
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00084 Score=54.60 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=62.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCC-CCCCCCCcceeEEEEecCcccHHHHHHHh-cCCeeEeC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG-KSSYKHQRYSRAYVELKKPAGVFEFAELL-NGHVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpG-K~S~Kp~~ySRAYI~Fkn~Edl~~F~d~f-dG~vFvDs 81 (523)
..+..+|.|.+||+.+||+++.+.+..+ +.|........ +... ....-|||.|.+.+++...++.+ +++.|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTG--AHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSC--SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCC--CcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4567899999999999999999999875 34655554433 2221 12346999999999999999999 88887532
Q ss_pred CCCeeeeEEEeccCC
Q 009888 82 KGAQFKAIVEYAPSQ 96 (523)
Q Consensus 82 KGne~~A~VEfAPYQ 96 (523)
...|+||--+
T Consensus 88 -----~l~v~~a~~~ 97 (107)
T 2cph_A 88 -----RLVLEWADSE 97 (107)
T ss_dssp -----BCEEEECCCC
T ss_pred -----EEEEEeCCCC
Confidence 5678887543
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.41 E-value=0.00095 Score=54.26 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=64.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+ . ...-.-|||.|.+.+++...++.++|..|.+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-- 84 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGP-D--GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-- 84 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECS-S--SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C--CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC--
Confidence 3457899999999999999999999865 346555554433 1 12234699999999999999999999988663
Q ss_pred CeeeeEEEeccCC
Q 009888 84 AQFKAIVEYAPSQ 96 (523)
Q Consensus 84 ne~~A~VEfAPYQ 96 (523)
......|+||--.
T Consensus 85 ~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 85 ASSSLVVKFADTD 97 (105)
T ss_dssp CSSCCEEEESCSS
T ss_pred CCccEEEEECccC
Confidence 2235678877543
No 32
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.0012 Score=54.22 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|.+||+.+||+++.+.+..+ +.|....+.... ....-|||.|.+.+++...++.++++.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 88 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNRR-----GGPPFAFVEFEDPRDAEDAVYGRDGYDYDG--- 88 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCSS-----SSSCCEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-----CCCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 345554443221 123469999999999999999999998732
Q ss_pred CeeeeEEEeccCC
Q 009888 84 AQFKAIVEYAPSQ 96 (523)
Q Consensus 84 ne~~A~VEfAPYQ 96 (523)
....|+||--.
T Consensus 89 --~~l~V~~a~~~ 99 (109)
T 1x4a_A 89 --YRLRVEFPRSG 99 (109)
T ss_dssp --EECEEECCCCC
T ss_pred --eEEEEEEcccC
Confidence 36678887443
No 33
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.001 Score=54.96 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+|++++.+.+... +.|.....+..+ .. ....-|||.|.+.+++...++.++|+.|.....
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDS-SG--TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECS-SS--CEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CC--CcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 4567899999999999999999988874 345555544433 11 123469999999999999999999999866553
Q ss_pred ---CeeeeEEEecc
Q 009888 84 ---AQFKAIVEYAP 94 (523)
Q Consensus 84 ---ne~~A~VEfAP 94 (523)
...+..|.||-
T Consensus 97 ~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 97 VSAPTEPLLCKFSG 110 (114)
T ss_dssp SCCCSSCBEEEECC
T ss_pred ccCCCCceeEEccC
Confidence 23356777774
No 34
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.37 E-value=0.00092 Score=58.46 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|.+||+.+||+++.+.+..+ +.|.....+.-+... ..-.-|||.|.+.+++...++.++++.|. |
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g 108 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKK--TACGFCFVEYYSRADAENAMRYINGTRLD---D 108 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTSEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4567899999999999999999999875 345554444332221 12346999999999999999999999983 2
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|++|.
T Consensus 109 --~~l~V~~a~ 117 (156)
T 1h2v_Z 109 --RIIRTDWDA 117 (156)
T ss_dssp --EECEEEEES
T ss_pred --eEEEEEECC
Confidence 467888885
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.37 E-value=0.0013 Score=54.49 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG-- 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTCEETT--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 56778999999999999999999999865 345554544332211 123479999999999999999999988743
Q ss_pred CCeeeeEEEeccCCC
Q 009888 83 GAQFKAIVEYAPSQR 97 (523)
Q Consensus 83 Gne~~A~VEfAPYQK 97 (523)
....|+||--..
T Consensus 85 ---~~l~V~~a~~~~ 96 (115)
T 2dgo_A 85 ---RQIRTNWATRKP 96 (115)
T ss_dssp ---EECEEEESSCCC
T ss_pred ---EEEEEEEccCCC
Confidence 367888885543
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.36 E-value=0.00094 Score=56.14 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=64.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+...+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 91 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGY--LKGYTLVEYETYKEAQAAMEGLNGQDLMG--- 91 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSS--BCSCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 3456799999999999999999999864 3565555543332221 13469999999999999999999999833
Q ss_pred CeeeeEEEeccCCCCC
Q 009888 84 AQFKAIVEYAPSQRVP 99 (523)
Q Consensus 84 ne~~A~VEfAPYQKvP 99 (523)
....|+||--+.-+
T Consensus 92 --~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 --QPISVDWCFVRGPP 105 (126)
T ss_dssp --SBCEEEESEESSSC
T ss_pred --eEEEEEEecCCCCC
Confidence 25678888655444
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.0013 Score=53.14 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+... ....-|||.|.+.+++...++.++++.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 81 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELFG--- 81 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSC--CCSSEEEECCSSHHHHHHHHHHHTTEEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4567899999999999999999999874 244444443322221 123469999999999999999999988742
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|+||--++
T Consensus 82 --~~l~V~~a~~~~ 93 (102)
T 2cqb_A 82 --RTIRVNLAKPMR 93 (102)
T ss_dssp --EEEEEEECCCCC
T ss_pred --cEEEEEeCCCCC
Confidence 367788875443
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.0014 Score=54.42 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=65.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
...+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+...+ ...-|||.|.+.+++...++.+++ .| +.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~Ai~~~~~-~~-~g- 85 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGK--SRGYGFVTMADRAAAERACKDPNP-II-DG- 85 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCC--CCSEEEEEESSHHHHHHHHTCSSC-EE-TT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCc--cceEEEEEECCHHHHHHHHHhCCC-cC-CC-
Confidence 34567899999999999999999999864 3466555544333221 224699999999999999999997 44 32
Q ss_pred CCeeeeEEEeccCCCCCCC
Q 009888 83 GAQFKAIVEYAPSQRVPKP 101 (523)
Q Consensus 83 Gne~~A~VEfAPYQKvPk~ 101 (523)
....|++|--...|..
T Consensus 86 ---~~l~V~~a~~~~~~~~ 101 (116)
T 2cqd_A 86 ---RKANVNLAYLGAKPRS 101 (116)
T ss_dssp ---EECEEEESTTTCCCCC
T ss_pred ---EEEEEEEcccCCCccc
Confidence 4678999876555543
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=0.0016 Score=52.51 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=61.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+...+ .-.-|||.|.+.+++...++ ++++.|.+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~-~~~~~~~g~- 79 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQR--PRGFGFITFEDEQSVDQAVN-MHFHDIMGK- 79 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCS--CCSEEEEEESSHHHHHHHHH-HCCCBSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCC--CCceEEEEECCHHHHHHHHH-hCCCEECCe-
Confidence 45677899999999999999999999874 3566555543322221 12459999999999999998 899877432
Q ss_pred CCeeeeEEEeccC
Q 009888 83 GAQFKAIVEYAPS 95 (523)
Q Consensus 83 Gne~~A~VEfAPY 95 (523)
...|++|--
T Consensus 80 ----~l~V~~a~~ 88 (99)
T 2dgs_A 80 ----KVEVKRAEP 88 (99)
T ss_dssp ----BCEEEECCC
T ss_pred ----EEEEEECCC
Confidence 567787753
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.35 E-value=0.00094 Score=55.47 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe---eEe
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV---FVN 80 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v---FvD 80 (523)
....-.|.||+|||..||+++.+.+.+.-.-.+.....+.-+.+.+ .-.-|||.|.+.+++....+.++|.. .+|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~--srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ--NRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS--CSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC--CceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 3455679999999999999999999875321222233332222211 12359999999999999999999863 345
Q ss_pred CCCCeeeeEEEec
Q 009888 81 EKGAQFKAIVEYA 93 (523)
Q Consensus 81 sKGne~~A~VEfA 93 (523)
.+ .-.|+||
T Consensus 84 Gr----~i~V~~A 92 (95)
T 2lkz_A 84 GK----TIGVDFA 92 (95)
T ss_dssp TE----EEEEEEC
T ss_pred CE----EEEEEEc
Confidence 43 5667776
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.0012 Score=53.66 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 84 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTG--QSKGFAFISFHRREDAARAIAGVSGFGYDH-- 84 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHHHHTTTCEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCC--ceeeEEEEEECCHHHHHHHHHHcCCCeeCC--
Confidence 35677999999999999999999888864 345555544332222 123469999999999999999999998742
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|+||--.
T Consensus 85 ---~~l~v~~a~~~ 95 (103)
T 2cq0_A 85 ---LILNVEWAKPS 95 (103)
T ss_dssp ---EECEEEESSCC
T ss_pred ---cEEEEEECCCC
Confidence 35678887543
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.34 E-value=0.0013 Score=53.62 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+... +.|....++..+ . .....-|||.|.+.+++...++.++|+.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 97 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDR-S--GRSLGTADVHFERKADALKAMKQYNGVPLDG--- 97 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECT-T--SCEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C--CCcceEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 4567899999999999999999999864 345554544333 1 1224469999999999999999999998832
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||.
T Consensus 98 --~~l~V~~a~ 106 (107)
T 3ulh_A 98 --RPMNIQLVT 106 (107)
T ss_dssp --EECEEEEEC
T ss_pred --cEEEEEEeC
Confidence 345677764
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0016 Score=53.59 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=62.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+. .....-|||.|.+.+++...++.++++.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 83 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKD---GKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-- 83 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTT---CSEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCC---CCeeeEEEEEECCHHHHHHHHHHhCCCEeCC--
Confidence 34567899999999999999999999865 3555544443321 1223469999999999999999999998842
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|++|-..
T Consensus 84 ---~~l~v~~a~~~ 94 (114)
T 2do0_A 84 ---RPMHVKMDERA 94 (114)
T ss_dssp ---EECEEEECSCC
T ss_pred ---CEEEEEEcccC
Confidence 35678887543
No 44
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00097 Score=53.94 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+|++++.+.+..+-.+.|.......| -|||.|.+.+++...++.++|+.|. |
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g----------~afV~f~~~~~A~~A~~~l~g~~~~---g 78 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD----------YAFVHFSNREDAVEAMKALNGKVLD---G 78 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS----------EEEEEESSHHHHHHHHHHHSSEEET---T
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC----------eEEEEeCCHHHHHHHHHHhCCCEeC---C
Confidence 34567999999999999999999998763355655544333 7999999999999999999999874 2
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 79 --~~l~v~~a~ 87 (99)
T 2cpd_A 79 --SPIEVTLAK 87 (99)
T ss_dssp --EEEEEECCC
T ss_pred --cEEEEEECC
Confidence 356788773
No 45
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.0012 Score=54.05 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=61.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhc------CC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLN------GH 76 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fd------G~ 76 (523)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-+.+. ....-|||.|.+.+++...++.++ ++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTE--HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSC--CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--CCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 35667899999999999999999999864 346554443322221 123469999999999999999999 77
Q ss_pred eeEeCCCCeeeeEEEecc
Q 009888 77 VFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 77 vFvDsKGne~~A~VEfAP 94 (523)
.|.+ ....|+||-
T Consensus 87 ~~~g-----~~l~v~~a~ 99 (111)
T 1x4h_A 87 KLDG-----RQLKVDLAV 99 (111)
T ss_dssp ESSS-----CEEEEECCC
T ss_pred EEcC-----EEEEEEECC
Confidence 7632 256778774
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.28 E-value=0.001 Score=54.12 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
++.+..+|.|.+||+.+||+++.+.+..+ + |.....+..+... ....-|||.|.+.+++...+ .++|+.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 82 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTD--KFKGFCYVEFDEVDSLKEAL-TYDGALLGD-- 82 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCC--ccceEEEEEECCHHHHHHHH-hhCCCeECC--
Confidence 35677899999999999999999999886 3 5554444332211 12346999999999999999 899988732
Q ss_pred CCeeeeEEEeccC
Q 009888 83 GAQFKAIVEYAPS 95 (523)
Q Consensus 83 Gne~~A~VEfAPY 95 (523)
....|++|--
T Consensus 83 ---~~l~V~~a~~ 92 (103)
T 2dng_A 83 ---RSLRVDIAEG 92 (103)
T ss_dssp ---EECEEEECCC
T ss_pred ---eEEEEEEecC
Confidence 3567888753
No 47
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.0013 Score=53.18 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=60.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
...+..+|.|.+||+.+||+++.+.+... +.|....+... -.-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~--------kg~afV~f~~~~~a~~a~~~l~g~~~~g-- 78 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKD--------KGFGFIRLETRTLAEIAKVELDNMPLRG-- 78 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETT--------TTEEEEECSSSHHHHHHHHHHTTCCBTT--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecC--------CCEEEEEECCHHHHHHHHHHhCCCEeCC--
Confidence 34567899999999999999999999875 24544444421 2479999999999999999999998743
Q ss_pred CCeeeeEEEeccC
Q 009888 83 GAQFKAIVEYAPS 95 (523)
Q Consensus 83 Gne~~A~VEfAPY 95 (523)
....|+||--
T Consensus 79 ---~~l~v~~a~~ 88 (99)
T 2cpj_A 79 ---KQLRVRFACH 88 (99)
T ss_dssp ---BCCEEEESSC
T ss_pred ---ceEEEEEcCC
Confidence 3567888744
No 48
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.27 E-value=0.0011 Score=56.77 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=62.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|++||+.+|++++.+.+... +.|........+...+ .-.-|||.|.+.++.....+.++|..|. |.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 159 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLTGR--PRGVAFVRYNKREEAQEAISALNNVIPE---GG 159 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCCCT---TC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcCCCCC--cceEEEEEECCHHHHHHHHHHhcCCEec---CC
Confidence 456899999999999999999999875 3566666554433221 1235999999999999999999999873 33
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..+-.|+||
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 456667775
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.25 E-value=0.0016 Score=50.53 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=56.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
++|.|++||+.+|++++.+.+... +.|.....+...... ....-|||.|.+.+++....+.++|+.|. | ..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g--~~ 72 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLN---G--RP 72 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEET---T--EE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCC--CccceEEEEECCHHHHHHHHHHhcCCeeC---C--cE
Confidence 579999999999999999999875 345544444332221 12346999999999999999999999873 2 24
Q ss_pred eEEEec
Q 009888 88 AIVEYA 93 (523)
Q Consensus 88 A~VEfA 93 (523)
-.|++|
T Consensus 73 l~v~~a 78 (83)
T 3md1_A 73 LRINWA 78 (83)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 566666
No 50
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.24 E-value=0.0011 Score=53.56 Aligned_cols=82 Identities=11% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeE--------EEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhc
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW--------FCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLN 74 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw--------fyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fd 74 (523)
++.+..+|.|++||+.+|++++.+.+... +.|.. ...+..+... ....-|||.|.+.+++...++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETG--KLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTT--SCBCEETTTTEESEEEEECTTTC--SEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCEeeccccccccEEEEecCCCC--CeeeEEEEEECCHHHHHHHHHHhC
Confidence 46778999999999999999999999864 23433 2322221111 123469999999999999999999
Q ss_pred CCeeEeCCCCeeeeEEEec
Q 009888 75 GHVFVNEKGAQFKAIVEYA 93 (523)
Q Consensus 75 G~vFvDsKGne~~A~VEfA 93 (523)
|..|.+. .-.|++|
T Consensus 85 g~~~~g~-----~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGN-----PIKVSFA 98 (99)
T ss_dssp TCBSSSS-----BCEEEEC
T ss_pred CCEeCCc-----EEEEEec
Confidence 9987532 4566665
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.24 E-value=0.00077 Score=56.28 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=61.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
+++.+..+|.|++||+.+|++++.+.+... +.|.....+..+... ....-|||.|.+.+++...++.++|+.|-+.
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETG--RSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTT--EEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 356678899999999999999999999865 345544444322211 1234699999999999999999999887432
Q ss_pred CCCeeeeEEEec
Q 009888 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
...|++|
T Consensus 97 -----~l~V~~a 103 (108)
T 2jrs_A 97 -----PMKVGHV 103 (108)
T ss_dssp -----CCEEECS
T ss_pred -----EEEEEEc
Confidence 3566665
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.24 E-value=0.0012 Score=54.68 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+... ....-|||.|.+.+++...++.++++.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 94 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTN--LSKCFGFVSYDNPVSAQAAIQSMNGFQIGM--- 94 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCC--CcCccEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 3456899999999999999999999875 234444443322211 122359999999999999999999988742
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 95 --~~l~V~~a~ 103 (115)
T 2cpz_A 95 --KRLKVQLKR 103 (115)
T ss_dssp --EECEEECCC
T ss_pred --EEEEEEEcC
Confidence 356788774
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.24 E-value=0.00076 Score=54.68 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=53.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
..|.||+||+.+||+++.+.+...-. .|.....+.-+.+. ..-.-|||.|.+.+++...++..++...++. ..
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~-~v~~v~i~~d~~t~--~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~ 74 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV-QAREVRLMRNKSSG--QSRGFAFVEFSHLQDATRWMEANQHSLNILG----QK 74 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC-CCSBCCSSSCSSSC--CCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC-EeEEEEEEecCCCC--CcCceEEEEecCHHHHHHHHHhcCCCeEECC----EE
Confidence 36899999999999999999987521 23322222211111 1123499999999999998887765544443 26
Q ss_pred eEEEecc
Q 009888 88 AIVEYAP 94 (523)
Q Consensus 88 A~VEfAP 94 (523)
..|+||-
T Consensus 75 i~V~~a~ 81 (91)
T 2lxi_A 75 VSMHYSD 81 (91)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 7788873
No 54
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.24 E-value=0.0012 Score=55.78 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=59.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+|++++.+.+... +.|.....+..+... ..-.-|||.|.+.+++....+.++|+.|- |
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 132 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF---G 132 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTC--CCCSEEEEEESCHHHHHHHHHHSTEEEET---T
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4567899999999999999999999875 346555543332221 12346999999999999999999998764 2
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
....|+||
T Consensus 133 --~~l~v~~A 140 (140)
T 2ku7_A 133 --RTIRVNLA 140 (140)
T ss_dssp --EEEEEEC-
T ss_pred --EEEEEEeC
Confidence 24456654
No 55
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.0011 Score=53.96 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=59.9
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
..+.+..+|.|++||+.+||+++.+.+..+ +.|.....+..+... ....-|||.|.+.+++...++. +++.|.+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTN--QSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSC--CEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCC--CcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 356778999999999999999999999874 345554544332221 1223599999999999999998 88776432
Q ss_pred CCCeeeeEEEecc
Q 009888 82 KGAQFKAIVEYAP 94 (523)
Q Consensus 82 KGne~~A~VEfAP 94 (523)
...|++|-
T Consensus 86 -----~l~V~~a~ 93 (105)
T 2dh8_A 86 -----NIDPKPCT 93 (105)
T ss_dssp -----EEBCCCSC
T ss_pred -----EEEEEEcc
Confidence 45566653
No 56
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.21 E-value=0.0022 Score=52.23 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+..+ + |.....+..+... .....-|||.|.+.+++...+ .++++.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~-g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 83 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNP-ERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--- 83 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCT-TSBCSCEEEEESSHHHHHHHH-GGGTCEETT---
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCCC-CCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---
Confidence 4567899999999999999999999875 4 6555544322210 111235999999999999999 999998732
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 84 --~~l~V~~a~ 92 (104)
T 1wi8_A 84 --KRIRVDVAD 92 (104)
T ss_dssp --EECEEEECC
T ss_pred --cEEEEEEcc
Confidence 356788774
No 57
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.19 E-value=0.0025 Score=52.53 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=62.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+....+|.|.+||+.+|++++.+.+... +.|....+... -.-|||.|.+.+++...++.++|+.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 88 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPE--------KGYSFVRFSTHESAAHAIVSVNGTTIEG--- 88 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC--------CCEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 5567899999999999999999999875 35655555543 3479999999999999999999998743
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|+||--+.
T Consensus 89 --~~l~v~~a~~~~ 100 (109)
T 1x4g_A 89 --HVVKCYWGKESP 100 (109)
T ss_dssp --EECEEECCCCCC
T ss_pred --cEEEEEecCCCC
Confidence 356788875443
No 58
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.18 E-value=0.0016 Score=54.50 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=58.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+||+++.+.+... |.|.....+ -.-|||.|.+.+++....+.++|+.| .
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~----------kg~afV~f~~~~~A~~Ai~~l~g~~~---~ 91 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL----------NGFAFVEFEEAESAAKAIEEVHGKSF---A 91 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE----------TTEEEEECSSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE----------CCEEEEEECCHHHHHHHHHHcCCCEE---C
Confidence 45678899999999999999999999875 245444444 24799999999999999999999998 2
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
| ....|+||
T Consensus 92 g--~~l~V~~a 100 (108)
T 2jvo_A 92 N--QPLEVVYS 100 (108)
T ss_dssp T--EECEEESC
T ss_pred C--eEEEEEEe
Confidence 2 35677776
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.18 E-value=0.0026 Score=52.24 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|.+||+.+|++++.+.+..+ +.|........+... ..-.-|||.|.+.+++....+.++|+.|. |
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g- 95 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM---G- 95 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTS--SBCSEEEEEESSHHHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEEC---C-
Confidence 456789999999999999999999875 356555544332221 12346999999999999999999999873 2
Q ss_pred eeeeEEEecc
Q 009888 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
....|+||-
T Consensus 96 -~~l~V~~a~ 104 (110)
T 1oo0_B 96 -QTIQVDWCF 104 (110)
T ss_dssp -EECEEEESE
T ss_pred -cEEEEEEcc
Confidence 356777763
No 60
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.0015 Score=53.20 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=60.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|.+||+.+|++++.+.+..+ +.|........+.+. ..-.-|||.|.+.+++....+.++|+.|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTG--YLKGYTLVEYETYKEAQAAMEGLNGQDLMG---- 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTS--SEEEEEEEEESCHHHHHHHHHHHTTCBSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCC--ceeeEEEEEECCHHHHHHHHHHhcCCEECC----
Confidence 455789999999999999999999875 356555544332221 123469999999999999999999987753
Q ss_pred eeeeEEEecc
Q 009888 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
....|+||-
T Consensus 93 -~~l~V~~a~ 101 (106)
T 1p27_B 93 -QPISVDWCF 101 (106)
T ss_dssp -SBCEEEESE
T ss_pred -cEEEEEeec
Confidence 245677763
No 61
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.16 E-value=0.0023 Score=52.87 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
++.+..+|.|++||+.+|++++.+.+... |.|.....+.. .....-|||.|.+.+++....+.++|+.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNT-----PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN-- 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECS-----TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC-----CCCCcEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence 45677899999999999999999999875 34554444321 1124579999999999999999999998832
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|+||-
T Consensus 75 ---~~l~v~~a~ 83 (115)
T 3lqv_A 75 ---RYLVVLYYN 83 (115)
T ss_dssp ---CBCEEEECC
T ss_pred ---eEEEEEEec
Confidence 256788774
No 62
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.14 E-value=0.0029 Score=53.28 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=65.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+... +.|......... .. ....-|||.|.+.+++....+.++|+.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--- 103 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG--- 103 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCS-SS--SCCSEEEEEESSHHHHHHHHHHHTTEESSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECC-CC--CEeeEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999874 345544444333 21 123469999999999999999999998743
Q ss_pred CeeeeEEEeccCCCCCC
Q 009888 84 AQFKAIVEYAPSQRVPK 100 (523)
Q Consensus 84 ne~~A~VEfAPYQKvPk 100 (523)
....|+||.-...+.
T Consensus 104 --~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 104 --RPMDIQLVASQIDLE 118 (124)
T ss_dssp --CEEEEEEECCTTCCC
T ss_pred --cEEEEEEeCCCCCCC
Confidence 357889887666554
No 63
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.14 E-value=0.0017 Score=55.06 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=60.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...+|.|++||+.+|++++.+.+... +.+....+....... ..-.-|||.|.+.++.....+.++|..|. |..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 159 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTG--VSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GAT 159 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCT---TCS
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecCCCC--CccceEEEEeCCHHHHHHHHHHhcCCccC---CCc
Confidence 45789999999999999999999875 346555554433221 12345999999999999999999999873 334
Q ss_pred eeeEEEec
Q 009888 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
.+..|.||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 45677776
No 64
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.0021 Score=53.84 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=60.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...+|.|++||+.+||+++.+.+..+ +.|......+. -.-|||.|.+.++...-++.++|+.|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---- 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEG--------GITAIVEFLEPLEARKAFRHLAYSKFHHV---- 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSS--------SSCEEEEESCHHHHHHHHHHHTTCBSSSS----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCEECCe----
Confidence 45799999999999999999999874 35655444321 12499999999999999999999987532
Q ss_pred eeeEEEeccCCC
Q 009888 86 FKAIVEYAPSQR 97 (523)
Q Consensus 86 ~~A~VEfAPYQK 97 (523)
...|+||+-..
T Consensus 75 -~l~V~~a~~~~ 85 (111)
T 1whx_A 75 -PLYLEWAPIGV 85 (111)
T ss_dssp -BCEEEEEETTT
T ss_pred -EEEEEECCCCc
Confidence 56799997543
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.13 E-value=0.0022 Score=53.29 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.+. ....-|||.|.+.++....++.++|+.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 109 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF--GNVISAKVFIDKQTS--LSKCFGFVSFDNPDSAQVAIKAMNGFQVGT--- 109 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS--CEEEEEEECCCSSSS--CCCCEEEEEEESSHHHHHHHHHCCCCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCC--CcCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4456899999999999999999999864 356555544332221 123579999999999999999999988742
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
....|+||
T Consensus 110 --~~l~V~~a 117 (118)
T 2khc_A 110 --KRLKVQLK 117 (118)
T ss_dssp --EECCEEEC
T ss_pred --EEEEEEec
Confidence 23455554
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.0019 Score=53.32 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=58.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCcee--------EEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN--------WFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG 75 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvd--------wfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG 75 (523)
..+..+|.|.+||+.+|++++.+.+...- .|. ....+..+... ....-|||.|.+.+++...++.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKETG--KPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTTC--SBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEeEccccCccCEEEEEeCCCC--CeeeEEEEEECCHHHHHHHHHHcCC
Confidence 45678999999999999999999998752 332 12222211111 1234699999999999999999999
Q ss_pred CeeEeCCCCeeeeEEEecc
Q 009888 76 HVFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 76 ~vFvDsKGne~~A~VEfAP 94 (523)
+.|.+ ....|++|-
T Consensus 88 ~~~~g-----~~l~V~~a~ 101 (113)
T 2cpe_A 88 KDFQG-----SKLKVSLAR 101 (113)
T ss_dssp CEETT-----EECEEECSS
T ss_pred CccCC-----CEEEEEECC
Confidence 99842 356777763
No 67
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.0017 Score=51.88 Aligned_cols=80 Identities=23% Similarity=0.212 Sum_probs=59.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+....+|.|.+||+.+|++++.+.+..+ +.|....++.-+. ...+|||.|.+.++....++.++|+.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~-----~~~~afV~f~~~~~a~~Ai~~l~g~~~~g--- 81 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDS-----ETAVVNVTYSSKDQARQALDKLNGFQLEN--- 81 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSS-----SSEEEEEEESSHHHHHHHHHHHTTCBCSS---
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 3457899999999999999999999875 3455442222211 12239999999999999999999998842
Q ss_pred CeeeeEEEeccC
Q 009888 84 AQFKAIVEYAPS 95 (523)
Q Consensus 84 ne~~A~VEfAPY 95 (523)
....|+||.-
T Consensus 82 --~~l~V~~a~~ 91 (96)
T 2e44_A 82 --FTLKVAYIPD 91 (96)
T ss_dssp --CBCEEEECCC
T ss_pred --cEEEEEEcCc
Confidence 2467777753
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.11 E-value=0.002 Score=51.02 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=60.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+..+..+|.|++||+.+|++++.+.+... +.|....... + . ......|||.|.+.+++...++.++++.|.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~-~--~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~- 76 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKM-E--N-GKSKGCGVVKFESPEVAERACRMMNGMKLSGR- 76 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEE-S--S-SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEc-c--C-CCcceEEEEEECCHHHHHHHHHHhCCCEECCc-
Confidence 34677899999999999999999999875 3455444442 1 1 11234699999999999999999999987432
Q ss_pred CCeeeeEEEeccC
Q 009888 83 GAQFKAIVEYAPS 95 (523)
Q Consensus 83 Gne~~A~VEfAPY 95 (523)
...|++|--
T Consensus 77 ----~l~v~~a~~ 85 (92)
T 2dgv_A 77 ----EIDVRIDRN 85 (92)
T ss_dssp ----CCCCEECSC
T ss_pred ----EEEEEEcCC
Confidence 455666643
No 69
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0021 Score=51.99 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=59.9
Q ss_pred CCCCCCceEEEecCCC-CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 2 KEPLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
....+..+|.|.+||+ .+||+++.+.+..+ +.|...... -.-|||.|.+.+++....+.++|..|.+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~----------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK----------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE----------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe----------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3456788999999999 99999999999875 334444432 2379999999999999999999998764
Q ss_pred CCCCeeeeEEEeccCCCCC
Q 009888 81 EKGAQFKAIVEYAPSQRVP 99 (523)
Q Consensus 81 sKGne~~A~VEfAPYQKvP 99 (523)
. ...|++|.-..-+
T Consensus 73 ~-----~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 73 K-----KLILEVSSSNARP 86 (96)
T ss_dssp T-----TBCEEEEECCCC-
T ss_pred c-----EEEEEEcCcCCCC
Confidence 3 4578887544433
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.07 E-value=0.0017 Score=56.22 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=60.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+..+... ..-.-|||.|.+.+++...++.++|..|-+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~- 116 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDGR- 116 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTT--SCEEEEEEECCSSSS--CCCCEEEEEESCHHHHHHHHHHHTTCCSSSS-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEECCE-
Confidence 45677899999999999999999999874 346555554333221 1234699999999999999999999887432
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
...|+||
T Consensus 117 ----~l~V~~a 123 (129)
T 2kxn_B 117 ----RIRVDFS 123 (129)
T ss_dssp ----CCEESCC
T ss_pred ----EEEEEEe
Confidence 4566665
No 71
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.06 E-value=0.0028 Score=54.07 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=60.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
++..+|.|++||+.+||+++.+.+... +.|....++..+... ....-|||.|.+.++.....+.++|..|.+
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---- 72 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRAI--GPINTCRIMRDYKTG--YSYGYAFVDFTSEMDSQRAIKVLNGITVRN---- 72 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEeCCCC--ccceEEEEEECCHHHHHHHHHhcCCCEeCC----
Confidence 356899999999999999999999874 345444443222111 122469999999999999999999998832
Q ss_pred eeeeEEEeccCC
Q 009888 85 QFKAIVEYAPSQ 96 (523)
Q Consensus 85 e~~A~VEfAPYQ 96 (523)
....|+++.-+
T Consensus 73 -~~l~v~~~~~~ 83 (168)
T 1b7f_A 73 -KRLKVSYARPG 83 (168)
T ss_dssp -EECEEEECCCC
T ss_pred -cEEEEEecCCC
Confidence 35667777544
No 72
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.05 E-value=0.0016 Score=55.27 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=60.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
.++|.|++||+.+||+++.+.+... +.|.....+..+.+. ....-|||.|.+.++.....+.++|..|.+ .
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI--GEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----K 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCC--cceeEEEEEECCHHHHHHHHHHcCCCccCC-----c
Confidence 5789999999999999999999875 346555554433222 123469999999999999999999988843 3
Q ss_pred eeEEEeccC
Q 009888 87 KAIVEYAPS 95 (523)
Q Consensus 87 ~A~VEfAPY 95 (523)
...|+++.-
T Consensus 73 ~l~v~~~~~ 81 (167)
T 1fxl_A 73 TIKVSYARP 81 (167)
T ss_dssp ECEEEECCC
T ss_pred eEEEEecCC
Confidence 556777753
No 73
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.05 E-value=0.0023 Score=53.98 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=60.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+... +.|.....+.-..+. ..-.-|||.|.+.+++..-++.++|..|..
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg--~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g--- 75 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTR--KHLGLARVLFTSTRGAKETVKNLHLTSVMG--- 75 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCC--ceeeEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 5677899999999999999999999874 345443332221111 112359999999999999999999998743
Q ss_pred CeeeeEEEeccC
Q 009888 84 AQFKAIVEYAPS 95 (523)
Q Consensus 84 ne~~A~VEfAPY 95 (523)
..-.|++|+.
T Consensus 76 --r~i~V~~a~~ 85 (110)
T 3s8s_A 76 --NIIHAQLDIK 85 (110)
T ss_dssp --EECEEEECST
T ss_pred --eEEEEEECCC
Confidence 2567888853
No 74
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.04 E-value=0.0019 Score=54.38 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|.+||+.+||+++.+.+... +.|.....+.. .-|||.|.+.+++...++.++|+.|.+....
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT---------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC---------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 356899999999999999999999875 34554433221 6799999999999999999999998776654
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
.....|+.+
T Consensus 83 ~~~i~v~~~ 91 (115)
T 3beg_B 83 TAYIRVKVD 91 (115)
T ss_dssp CCBCEEEEC
T ss_pred eEEEEeccC
Confidence 444556554
No 75
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.03 E-value=0.0019 Score=51.40 Aligned_cols=78 Identities=14% Similarity=0.290 Sum_probs=60.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|++||+.+||+++.+.+... . |...... ..-.-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~--v~~~~i~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---- 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-D--LKYCYVD--------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---- 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-C--CCCEEEE--------GGGTEEEECCSCHHHHHHHHHHHTTEEETT----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-C--eEEEEEe--------CCCcEEEEEECCHHHHHHHHHHhCCCeECC----
Confidence 456899999999999999999999876 2 3332221 123469999999999999999999998743
Q ss_pred eeeeEEEeccCCCC
Q 009888 85 QFKAIVEYAPSQRV 98 (523)
Q Consensus 85 e~~A~VEfAPYQKv 98 (523)
....|++||-..+
T Consensus 68 -~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 68 -KDLIVQLQPTDAL 80 (88)
T ss_dssp -EEEEEEECCCCCC
T ss_pred -cEEEEEEcCCCce
Confidence 3578999876543
No 76
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.0018 Score=52.27 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=58.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|.+||+.+||+++.+.+.... .+.. +.-+... ....-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~~---~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 81 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV--RARI---VTDRETG--SSKGFGFVDFNSEEDAKAAKEAMEDGEIDG--- 81 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS--EEEE---EECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe--EEEE---EecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCeECC---
Confidence 56778999999999999999999888541 2322 2111111 123469999999999999999999998742
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 82 --~~l~V~~a~ 90 (102)
T 2fc8_A 82 --NKVTLDWAK 90 (102)
T ss_dssp --EECEEEECC
T ss_pred --eEEEEEEec
Confidence 357888874
No 77
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.02 E-value=0.0043 Score=50.66 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=58.6
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 3 EPLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
.+.+..+|.|++||+ .+|++++.+.+..+ |.|...... -.-|||.|.+.+++....+.++|..|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK----------NAFGFIQFDNPQSVRDAIEXESQEMNFG- 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC----------SSEEEEEESSHHHHHHHHHHHTTSEETT-
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe----------CCEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 356788999999999 99999999999875 345554442 2469999999999999999999998742
Q ss_pred CCCeeeeEEEec
Q 009888 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
....|+||
T Consensus 85 ----~~l~V~~a 92 (97)
T 2xnq_A 85 ----KKLILEVS 92 (97)
T ss_dssp ----EECEEEEC
T ss_pred ----EEEEEEec
Confidence 34677776
No 78
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.01 E-value=0.0028 Score=49.46 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHh-cCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELL-NGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~f-dG~vFvDsK 82 (523)
..+..+|.|.+||+.+|++++.+.+... +.|....+... -.-|||.|.+.++.....+.+ +|+.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~~--------kg~afV~f~~~~~A~~a~~~l~~~~~~~g-- 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQR--------QQCAFIQFATRQAAEVAAEKSFNKLIVNG-- 76 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEGG--------GTEEEEEESSHHHHHHHHHTTTTTCEETT--
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEECC--------CCEEEEEECCHHHHHHHHHHhcCCeeECC--
Confidence 4566899999999999999999999875 34655555531 247999999999999999988 8877643
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|+||
T Consensus 77 ---~~l~v~~a 84 (85)
T 2ytc_A 77 ---RRLNVKWG 84 (85)
T ss_dssp ---EECCEEEC
T ss_pred ---CEEEEEec
Confidence 24556665
No 79
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.00 E-value=0.0016 Score=54.72 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=57.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
|...++|.|++||+.+||+++.+.+..+ |.|.....+..+ . ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~--~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g--- 72 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE--N--GSKGYGFVHFETQEAAERAIEKMNGMLLND--- 72 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET--T--EEEEEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhcc--CCEEEEEEeecC--C--CCCceEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 5567899999999999999999999875 345544333211 1 112359999999999999999999998743
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|++|-
T Consensus 73 --~~i~V~~a~ 81 (115)
T 4f25_A 73 --RKVFVGRFK 81 (115)
T ss_dssp --EECEEEESS
T ss_pred --EEEEEEECC
Confidence 255677764
No 80
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.00 E-value=0.0026 Score=54.31 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=61.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.+. ....-|||.|.+.+++...++.++|..|.+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-- 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRETR--QSRGYGFVKFQSGSSAQQAIAGLNGFNILNK-- 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTTT--EEEEEEEEEESSHHHHHHHHHHTTTEECSSC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECCe--
Confidence 4456899999999999999999999875 345554444332221 1234699999999999999999999887532
Q ss_pred CeeeeEEEeccC
Q 009888 84 AQFKAIVEYAPS 95 (523)
Q Consensus 84 ne~~A~VEfAPY 95 (523)
...|+||--
T Consensus 113 ---~l~v~~a~~ 121 (139)
T 1u6f_A 113 ---RLKVALAAS 121 (139)
T ss_dssp ---EEEEEESSC
T ss_pred ---EEEEEECCC
Confidence 567887743
No 81
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0057 Score=51.79 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+...|.|++||+.+|++++.+.+... +.|.....+...... ....-|||.|.+.+++....+.++|..|- |
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 156 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLN---G 156 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEET---T
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCccC---C
Confidence 4456789999999999999999999874 356555554332221 11235999999999999999999999873 2
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
..-.|+||
T Consensus 157 --~~i~v~~a 164 (166)
T 3md3_A 157 --RPLRINWA 164 (166)
T ss_dssp --EECEEEES
T ss_pred --cEEEEEec
Confidence 34556665
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.0048 Score=49.94 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=59.3
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLL----ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~----eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
..+.++|.|.+||+.+||+++. +.+... +.|.....+..+.. -..|||.|.+.+++..-++.++|+.|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~-----rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY-----QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST-----TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC-----CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4577899999999999999999 555543 35655444433222 236999999999999999999999874
Q ss_pred eCCCCeeeeEEEecc
Q 009888 80 NEKGAQFKAIVEYAP 94 (523)
Q Consensus 80 DsKGne~~A~VEfAP 94 (523)
+ ....|++|-
T Consensus 79 g-----r~l~V~~a~ 88 (96)
T 2dgx_A 79 S-----KKILVSLAT 88 (96)
T ss_dssp T-----EEEEEEECC
T ss_pred C-----eEEEEEEcC
Confidence 2 256788873
No 83
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.97 E-value=0.0021 Score=55.15 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+..+|.|++||+.+||+++.+.+... +.|.....+............-|||.|.+.+++....+.+++..+.+..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY--GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 46799999999999999999999875 34655554433222111233469999999999999999999998876544
No 84
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.96 E-value=0.0032 Score=49.38 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=56.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
..+|.|++||+.+|++++.+.+... +.|............+ ...-|||.|.+.+++.... .++|+.|.+ .
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~a~-~~~g~~~~g-----~ 75 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGH--PKGFAYIEFSDKESVRTSL-ALDESLFRG-----R 75 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSS--CCEEEEEEESSTHHHHHHG-GGTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCC--cceEEEEEECCHHHHHHHH-hcCCCEECC-----c
Confidence 4689999999999999999999875 3465555443322221 2346999999999999998 999998743 2
Q ss_pred eeEEEec
Q 009888 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
.-.|++|
T Consensus 76 ~l~V~~a 82 (89)
T 3ucg_A 76 QIKVIPK 82 (89)
T ss_dssp ECEEEET
T ss_pred EEEEEEc
Confidence 4566665
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=0.007 Score=50.04 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=56.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
..+|.|.+||+.+|++++.+.+..+ +.|.....+..+... ..-.-|||.|.+.+++...+ .++|+.|.+ .
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 94 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSR--RSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-----V 94 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSS--SCCCCEEEEESCGGGHHHHH-HHTTEEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCC--ccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-----e
Confidence 3589999999999999999999864 356555544322211 11235999999999999999 999998832 3
Q ss_pred eeEEEec
Q 009888 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
...|++|
T Consensus 95 ~l~V~~a 101 (114)
T 2cq4_A 95 PIIVQAS 101 (114)
T ss_dssp EEEEEEH
T ss_pred EEEEEec
Confidence 5667765
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.0031 Score=50.04 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=58.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+....+|.|++||+.+||+++.+.+... . +.....+.. . . ...-.-|||.|.+.+++....+ ++|..|.+.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~--i~~v~i~~~-~-~-g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr- 77 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-K--PVAIRIVRN-A-H-GNKTGYIFVDFSNEEEVKQALK-CNREYMGGR- 77 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-C--CSEEEEEEC-T-T-SCEEEEEEEECSSHHHHHHHHH-SCSEEETTE-
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-C--ceEEEEEEC-C-C-CCCceEEEEEECCHHHHHHHHH-hCCceeCCc-
Confidence 45677899999999999999999999876 2 444343322 1 1 1123579999999999999999 999887322
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
.-.|++|-
T Consensus 78 ----~i~v~~a~ 85 (91)
T 2dgw_A 78 ----YIEVFREK 85 (91)
T ss_dssp ----EEEEEEES
T ss_pred ----EEEEEECC
Confidence 45666653
No 87
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.91 E-value=0.0068 Score=49.94 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=58.4
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 5 LQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 5 ~~r~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
....+|.|.+||+. +||+++.+.+..+- .|..... .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 89 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV----------HKGYAFVQYSNERHARAAVLGENGRVLAG--- 89 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE----------ETTEEEEECSSSHHHHHHHHHHTTCEETT---
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE----------eCCEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 34579999999999 99999999998752 3433333 12469999999999999999999998842
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|+||--.+
T Consensus 90 --~~l~V~~a~~~~ 101 (110)
T 1wf1_A 90 --QTLDINMAGEPK 101 (110)
T ss_dssp --EECCEEESCCCC
T ss_pred --eEEEEEECCCCC
Confidence 356788875433
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.90 E-value=0.0062 Score=52.89 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+..+ +.|........+... ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 139 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTK--ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--- 139 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCT--TSCCEEEEEESBHHHHHHHHHHSTTEESSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 3456899999999999999999999775 346554443322221 123469999999999999999999988743
Q ss_pred CeeeeEEEeccCCC
Q 009888 84 AQFKAIVEYAPSQR 97 (523)
Q Consensus 84 ne~~A~VEfAPYQK 97 (523)
....|+||--++
T Consensus 140 --~~l~v~~a~~~~ 151 (158)
T 2kn4_A 140 --RELRVQMARYGR 151 (158)
T ss_dssp --SEEEEEEECCSS
T ss_pred --eEEEEEECCCCC
Confidence 357888886554
No 89
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.89 E-value=0.0021 Score=51.94 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=57.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
++|.|.+||+.+||+++.+.+... +.|........ .-.-|||.|.+.+++....+.++|+.|.+. .
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARN-------PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-----R 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESS-------SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-----C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC-------CCCEEEEEECCHHHHHHHHHHHCCCeECCc-----E
Confidence 479999999999999999998875 24554454433 234799999999999999999999987432 3
Q ss_pred eEEEeccCC
Q 009888 88 AIVEYAPSQ 96 (523)
Q Consensus 88 A~VEfAPYQ 96 (523)
..|++|--.
T Consensus 67 l~V~~a~~~ 75 (101)
T 2hvz_A 67 VRVELSTGM 75 (101)
T ss_dssp CEEEESSSC
T ss_pred EEEEEccCC
Confidence 678877544
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.0048 Score=51.28 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+... |.|.....+..+. ..-.-|||.|.+.+++....+.++|+.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~----~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g--- 96 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNER----GSKGFGFVTFENSADADRAREKLHGTVVEG--- 96 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTT----BCTTEEEEECCCSHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCC----CCceEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 2344334332211 123469999999999999999999998743
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
....|++|
T Consensus 97 --~~l~V~~a 104 (109)
T 2err_A 97 --RKIEVNNA 104 (109)
T ss_dssp --EECEEEEC
T ss_pred --EEEEEEEC
Confidence 35567776
No 91
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.88 E-value=0.0019 Score=49.36 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
||.|.+||+.+|++++.+.+... +.|........+.+. ....-|||.|.+.+++....+ ++++.|-+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTN--RHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSST--TSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCC--CcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 68999999999999999999874 345443333222211 123469999999999988877 88887743
No 92
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0039 Score=50.37 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
+....+|.|.+||+.+|++++.+.+... +.|....... .-.-|||.|.+.+++...++.++|+.|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYP--------EKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEET--------TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEec--------CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4457899999999999999999999875 3454444441 1246999999999999999999999874
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.85 E-value=0.0048 Score=54.76 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|.+||+.+|++++.+.+..+ +.|....++..+... ....-|||.|.+.+++...++.++|+.|. |
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g- 141 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM---G- 141 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTS--SEEEEEEEEESSHHHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCC--cEeeEEEEEECCHHHHHHHHHHhCCCEEC---C-
Confidence 345689999999999999999999875 356555554332221 12346999999999999999999999883 2
Q ss_pred eeeeEEEeccC
Q 009888 85 QFKAIVEYAPS 95 (523)
Q Consensus 85 e~~A~VEfAPY 95 (523)
....|+||--
T Consensus 142 -~~l~V~~a~~ 151 (165)
T 1rk8_A 142 -QTIQVDWCFV 151 (165)
T ss_dssp -EECEEEESEE
T ss_pred -EEEEEEEecC
Confidence 3567888743
No 94
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.83 E-value=0.0058 Score=52.48 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|++||+.+|++++.+.+... +.|............ ..-.-|||.|.+.++.....+.++|+.|-+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 163 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLGD---- 163 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTC--SEEEEEEEEESSTTHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHcCCCEECC----
Confidence 346889999999999999999999874 356655554433221 112359999999999999999999998832
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..-.|+||
T Consensus 164 -~~l~V~~A 171 (172)
T 2g4b_A 164 -KKLLVQRA 171 (172)
T ss_dssp -EECEEEEC
T ss_pred -eEEEEEeC
Confidence 24566665
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.0048 Score=49.99 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=60.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe-eEeC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-FVNE 81 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v-FvDs 81 (523)
.+.+..+|.|.+||+.+||+++.+.+...+. .|.....+... .. ..-.-|||.|.+.+++...++.++++. |.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQ-TG--VSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECT-TC--CEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECC-CC--CccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 4567799999999999999999999987332 45444444332 11 123469999999999999999999988 5432
Q ss_pred CCCeeeeEEEec
Q 009888 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
...|++|
T Consensus 81 -----~l~v~~a 87 (104)
T 2dhg_A 81 -----PVRLSVA 87 (104)
T ss_dssp -----CCCCCBC
T ss_pred -----eEEEEEc
Confidence 3456665
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.81 E-value=0.0019 Score=52.28 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+..+|.|++||+.+|++++.+.+... +.|............ ....-|||.|.+.+++....+.++|+.|.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETG--KPKGYGFCEYQDQETALSAMRNLNGREFSG----- 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTT--EEEEEEEEECSCHHHHHHHHHHSSSBSCSS-----
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeeCC-----
Confidence 34689999999999999999999874 234333333222111 123469999999999999999999998833
Q ss_pred eeeEEEeccC
Q 009888 86 FKAIVEYAPS 95 (523)
Q Consensus 86 ~~A~VEfAPY 95 (523)
....|+||--
T Consensus 78 ~~l~v~~a~~ 87 (104)
T 1p1t_A 78 RALRVDNAAS 87 (104)
T ss_dssp SCBEEEETTC
T ss_pred cEEEEEeCCC
Confidence 2467887753
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.0097 Score=50.11 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe-eEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-FVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v-FvDsK 82 (523)
..+..+|.|++||+.+||+++.+.+.++ +.|.....+++ -.-|||.|.+.++...-++.+++.. .++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPF--------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3456789999999999999999999875 45666555543 2469999999999999998887653 22322
Q ss_pred CCeeeeEEEeccCCCCC
Q 009888 83 GAQFKAIVEYAPSQRVP 99 (523)
Q Consensus 83 Gne~~A~VEfAPYQKvP 99 (523)
...|+||-.+.+-
T Consensus 82 ----~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 ----QAFFNYSTSKRIT 94 (104)
T ss_dssp ----BCEEEECSSSSCC
T ss_pred ----EEEEEEccCcccc
Confidence 5679998766543
No 98
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.80 E-value=0.0026 Score=50.80 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHH----HHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLL----ALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~----eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
...+..+|.|++||+.+|++++. +.+... +.|....... . .....-|||.|.+.++.....+.++|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~----~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSR----S-LKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCH----H-HHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEc----C-CCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45677899999999999999998 555543 3454433321 0 01123699999999999999999999988
Q ss_pred EeCCCCeeeeEEEeccC
Q 009888 79 VNEKGAQFKAIVEYAPS 95 (523)
Q Consensus 79 vDsKGne~~A~VEfAPY 95 (523)
. | ....|+||--
T Consensus 77 ~---g--~~l~v~~a~~ 88 (97)
T 1nu4_A 77 Y---D--KPMRIQYAKT 88 (97)
T ss_dssp T---T--EECEEEECSS
T ss_pred C---C--cEEEEEEccC
Confidence 2 3 4567787743
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.0084 Score=48.41 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+||+++.+.+..+ +.|. .+. +. ......-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~---~~~-~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 80 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA--TFIK---VPQ-NQ--NGKSKGYAFIEFASFEDAKEALNSCNKREIEG--- 80 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC--SEEE---CCB-CS--SSCBCSEEEEECSSHHHHHHHHHHTSSEEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CEEE---EEE-CC--CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 4567899999999999999999998874 3341 111 11 11123479999999999999999999988752
Q ss_pred CeeeeEEEeccCC
Q 009888 84 AQFKAIVEYAPSQ 96 (523)
Q Consensus 84 ne~~A~VEfAPYQ 96 (523)
....|+||--+
T Consensus 81 --~~l~v~~a~~~ 91 (101)
T 2fc9_A 81 --RAIRLELQGPR 91 (101)
T ss_dssp --EEEEEEECSSC
T ss_pred --eEEEEEEcCCC
Confidence 35678887544
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.75 E-value=0.0026 Score=49.61 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...+|.|++||+.+||+++.+.+... +.|............ .....-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHP-HLSKGYAYVEFENPDEAEKALKHMDGGQIDG----- 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEE-EEECSEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCC-CCCCcEEEEEEecHHHHHHHHHHcCCCeECC-----
Confidence 45789999999999999999999874 345444332211110 1123479999999999999999999999843
Q ss_pred eeeEEEec
Q 009888 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
....|++|
T Consensus 75 ~~l~v~~a 82 (88)
T 4a8x_A 75 QEITATAV 82 (88)
T ss_dssp EECEEEEE
T ss_pred eEEEEEEC
Confidence 24567776
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.008 Score=49.05 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=62.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhc--CCeeEe
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLN--GHVFVN 80 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fd--G~vFvD 80 (523)
...+..+|.|.+||+.+|++++.+.+..+-. .|.....+.-+... ...-.-|||.|.+.+++...++.++ ++.|.+
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-~v~~v~i~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTE-GVLDVIVYASAADK-MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHST-TEEEEECCSSSCTT-TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcC-CceEEEEEccCCCC-CCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 3456789999999999999999999987522 15544443121111 1223579999999999999999996 455533
Q ss_pred CCCCeeeeEEEeccCCCCC
Q 009888 81 EKGAQFKAIVEYAPSQRVP 99 (523)
Q Consensus 81 sKGne~~A~VEfAPYQKvP 99 (523)
....|+||--...+
T Consensus 82 -----~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 -----HQIAVDWAEPEIDV 95 (109)
T ss_dssp -----BCCEEEESCSSCST
T ss_pred -----CeEEEEEcCCCCCc
Confidence 25688888655444
No 102
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0033 Score=50.39 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=61.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCC-CCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSY-KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~-Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
.+..+|.|++||+.+||+++.+.+... +.|.....+...... ......-|||.|.+.+++...++.++|+.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 77 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG--- 77 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 467899999999999999999999864 345444443222100 00123469999999999999999999998752
Q ss_pred CeeeeEEEeccCC
Q 009888 84 AQFKAIVEYAPSQ 96 (523)
Q Consensus 84 ne~~A~VEfAPYQ 96 (523)
....|++|--.
T Consensus 78 --~~l~V~~a~~~ 88 (98)
T 2cpf_A 78 --HKLEVRISERA 88 (98)
T ss_dssp --EECEEECSSCS
T ss_pred --eEEEEEEccCC
Confidence 25678877443
No 103
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.74 E-value=0.0036 Score=54.40 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=63.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+..+|.|++||+.+|++++.+.+... +.|.....+..+...+ .-.-|||.|.+.+++...++.++|+.|.+.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~--~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~-- 117 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKE--SRGFAFVRFHDKRDAEDAMDAMDGAVLDGR-- 117 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSSSS--CCSCCEEECSCHHHHHHHHTTTTTCCSSSS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHcCCCEECCE--
Confidence 3456789999999999999999999875 2454444433222211 123599999999999999999999987432
Q ss_pred CeeeeEEEeccCCCCCC
Q 009888 84 AQFKAIVEYAPSQRVPK 100 (523)
Q Consensus 84 ne~~A~VEfAPYQKvPk 100 (523)
...|++|--++-+.
T Consensus 118 ---~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 118 ---ELRVQMARYGRPPD 131 (135)
T ss_dssp ---CCEEEECCCCCCCT
T ss_pred ---EEEEEECCCCCCCc
Confidence 56888886655443
No 104
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0025 Score=50.90 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=56.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
...+..+|.|++||+.+|++++.+.+... +.|... ...| ..-.-|||.|.+.+++....+.++|+.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 79 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-SQDG------KSKGIAYIEFKSEADAEKNLEEKQGAEID--- 79 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCE-EETT------EEEEEEEEEESSHHHHHHHHHHTTEEEET---
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-CCCC------CcceEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 45567899999999999999999988874 233222 1111 12346999999999999999999998873
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
| ....|++|
T Consensus 80 g--~~l~v~~a 88 (96)
T 1fjc_A 80 G--RSVSLYYT 88 (96)
T ss_dssp T--EEEEEEEC
T ss_pred C--eEEEEEEc
Confidence 2 24677776
No 105
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.73 E-value=0.0047 Score=49.21 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=57.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC-CeeEeC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG-HVFVNE 81 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG-~vFvDs 81 (523)
.+.+..+|.|.+||+.+||+++.+.+..+-. -+...... ...-|||.|.+.+++...++.++| +.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-vv~~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g- 72 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKL-PLAGQVLL---------KSGYAFVDYPDQNWAIRAIETLSGKVELHG- 72 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTC-CCSSCEEE---------ETTEEEECCSCHHHHHHHHHHHTTTCEETT-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCC-ceEEEEEc---------CCCEEEEEECCHHHHHHHHHHccCCeeECC-
Confidence 4566789999999999999999998877522 01111111 124699999999999999999999 77632
Q ss_pred CCCeeeeEEEecc
Q 009888 82 KGAQFKAIVEYAP 94 (523)
Q Consensus 82 KGne~~A~VEfAP 94 (523)
....|++|-
T Consensus 73 ----~~l~v~~a~ 81 (93)
T 2cqh_A 73 ----KIMEVDYSV 81 (93)
T ss_dssp ----EECEEEECC
T ss_pred ----EEEEEEEcc
Confidence 467788874
No 106
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0083 Score=48.04 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=57.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+....+|.|++||+.+||+++.+.+..+-. ..+.+.... .. .....-|||.|.+.+++...++.++|+.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~---~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-- 84 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EK--GMPTGEAMVAFESRDEATAAVIDLNDRPIGS-- 84 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC---SS--SCEEEEEEEEESCHHHHHHHHHHTTTCEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC---CC--CCeeeEEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 455689999999999999999999886521 112222221 10 1123569999999999999999999998743
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|++|-
T Consensus 85 ---~~l~V~~a~ 93 (98)
T 2cqp_A 85 ---RKVKLVLGS 93 (98)
T ss_dssp ---EECEEEESS
T ss_pred ---eEEEEEEcC
Confidence 356777763
No 107
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.71 E-value=0.0053 Score=54.64 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=53.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
..+|.|++||+.+||+++.+.+..+ +.|....++.-+... ....-|||.|.+.+++...++.+++..|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPF--GPIKSIDMSWDSVTM--KHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEECCC-CC---CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCC--ccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 4689999999999999999999875 356655554322211 123469999999999999999999988743
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.71 E-value=0.0034 Score=53.77 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
+.|...++|.|++||+..||+++.+.+...- ..|.+..-..++ ...-|||.|.+.+++..-++.++|..|.+.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G-~~v~~v~i~~~~------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENS-LETTFSSVNTRD------FDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHT-CCCSEEECSSCS------SSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhC-CeeEEEEEEcCC------CCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3577889999999999999999999887652 145543322221 234699999999999999999999887432
Q ss_pred CCCeeeeEEEecc
Q 009888 82 KGAQFKAIVEYAP 94 (523)
Q Consensus 82 KGne~~A~VEfAP 94 (523)
.-.|++|-
T Consensus 96 -----~i~V~~a~ 103 (111)
T 2jvr_A 96 -----VITVERDD 103 (111)
T ss_dssp -----EEEEEESC
T ss_pred -----EEEEEECC
Confidence 45677663
No 109
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.71 E-value=0.0094 Score=49.08 Aligned_cols=83 Identities=17% Similarity=0.343 Sum_probs=58.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-Cce-eEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRY-NWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkv-dwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
+.+..+|.|++||+.+|++++.+.+..+-. ..+ -......|+. -.-|||.|.+.+++...++.++|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~------~g~afV~f~~~~~a~~Ai~~l~g~~~~-- 93 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM------RGQAFITFPNKEIAWQALHLVNGYKLY-- 93 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS------CSEEEEECSSHHHHHHHHHHSTTCBCS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCcc------ceEEEEEECCHHHHHHHHHHhCCCEeC--
Confidence 345689999999999999999988876421 001 1122233321 246999999999999999999999883
Q ss_pred CCCeeeeEEEeccCCC
Q 009888 82 KGAQFKAIVEYAPSQR 97 (523)
Q Consensus 82 KGne~~A~VEfAPYQK 97 (523)
| ....|+||--.+
T Consensus 94 -g--~~l~v~~a~~~~ 106 (115)
T 2cpx_A 94 -G--KILVIEFGKNKK 106 (115)
T ss_dssp -S--CBCEEEECCCCS
T ss_pred -C--cEEEEEEccCCC
Confidence 2 256888875443
No 110
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.0065 Score=50.51 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCCCceEEEecCCCCCCHHHHH---HHhcccCCCceeEEEeeCCCCCCC-CCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPGKSSYK-HQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~---eqL~p~~~gkvdwfyFVpGK~S~K-p~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
..+..+|.|.+||+.+||++++ +.+..+ +.|........+...+ .....-|||.|.+.+++...++.++|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3467899999999999999998 666653 3565555443322111 122357999999999999999999999873
Q ss_pred eCCCCeeeeEEEecc
Q 009888 80 NEKGAQFKAIVEYAP 94 (523)
Q Consensus 80 DsKGne~~A~VEfAP 94 (523)
| ....|+||-
T Consensus 90 ---g--r~l~V~~a~ 99 (111)
T 2cpi_A 90 ---G--RTLKASLGT 99 (111)
T ss_dssp ---T--EEEEEESCC
T ss_pred ---C--EEEEEEecc
Confidence 2 256788774
No 111
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.68 E-value=0.0086 Score=53.31 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=63.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...+|.|++||+.+|++++.+.+..+ +.|....++..+...+ ...-|||.|.+.++.....+.++|+.|-+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g----- 194 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDPTTGK--HKGYGFIEYEKAQSSQDAVSSMNLFDLGG----- 194 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecCCCCC--cCceEEEEecCHHHHHHHHHHccCCEeCC-----
Confidence 45789999999999999999999875 3576666654433221 13359999999999999999999998732
Q ss_pred eeeEEEeccCCCCC
Q 009888 86 FKAIVEYAPSQRVP 99 (523)
Q Consensus 86 ~~A~VEfAPYQKvP 99 (523)
..-.|+||--...|
T Consensus 195 ~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 195 QYLRVGKAVTPPMP 208 (216)
T ss_dssp SBCEEEECSSCSST
T ss_pred cEEEEEEecCCCCC
Confidence 24678887655433
No 112
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.64 E-value=0.0064 Score=55.43 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=62.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+.+.++|.|.+||+.+|++++.+.+..+ +.|.....+... .. ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~-~g--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--- 156 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG--- 156 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT--SCCSEEEECCCT-TS--SCSCCEEEEESCHHHHHHHHHHSTTCBCSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CC--CEeeEEEEEeCCHHHHHHHHHHhCCCEECC---
Confidence 4457899999999999999999988874 234443333222 11 123469999999999999999999998743
Q ss_pred CeeeeEEEeccCCCCC
Q 009888 84 AQFKAIVEYAPSQRVP 99 (523)
Q Consensus 84 ne~~A~VEfAPYQKvP 99 (523)
....|+||.-...+
T Consensus 157 --r~l~V~~a~~~~~~ 170 (177)
T 2f3j_A 157 --RPMDIQLVASQIDL 170 (177)
T ss_dssp --SBCEEEEESSGGGG
T ss_pred --EEEEEEEecCCCCC
Confidence 25678888655433
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.64 E-value=0.0084 Score=51.32 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|++||+.+|++++.+.+... +.|.......... ...-.-|||.|.+.++.....+.++|..+.+..
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~-- 165 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSF--GQIEECRILRGPD---GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC-- 165 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT---SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC--
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEEEEECCC---CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCC--
Confidence 356789999999999999999999875 3465555443321 111234999999999999999999998876532
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..+-.|.||
T Consensus 166 ~~~l~V~~a 174 (175)
T 3nmr_A 166 SSPMVVKFA 174 (175)
T ss_dssp SSCCEEEEC
T ss_pred CCCeEEEec
Confidence 234566665
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0044 Score=50.00 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|.+||+.+|++++.+.+..+- .|. ...+.+ ....-|||.|.+.+++...++.++|..|.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G--~v~-~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--- 84 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELG--SVP-LRLTWQ------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD--- 84 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTT--CCC-SEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS---
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcC--CEE-EEEEcC------CCCcEEEEEECCHHHHHHHHHHhCCCEECCc---
Confidence 4468999999999999999999887652 222 122222 1123699999999999999999999987532
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
...|++|
T Consensus 85 --~l~V~~a 91 (97)
T 2e5j_A 85 --TLRVALA 91 (97)
T ss_dssp --CCEEEEC
T ss_pred --EEEEEEc
Confidence 4667776
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.62 E-value=0.0063 Score=47.72 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.+.+..+|.|++||+.+||+++.+.+... +.|.....+..+.+. ....-|||.|.+.+++....+. +++.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~-~~~~~ 77 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKF--GEVVDCTIKMDPNTG--RSRGFGFILFKDAASVEKVLDQ-KEHRL 77 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTC--CEEEEEEEEESSTHHHHHHHHS-SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCC--ccccEEEEEECCHHHHHHHHHh-CCCEE
Confidence 45678899999999999999999999764 356555544332221 1233599999999999988865 55543
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.0078 Score=49.91 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=56.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
..+|.|.+||+.+||+++.+.+..+ +.|.....+..+...+ ...-|||.|.+.+++...++. +++.|.+ .
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~ 96 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKR--SRGFGFVTFSSMAEVDAAMAA-RPHSIDG-----R 96 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSS--CCSEEEEECSSHHHHHHHHTS-CSEEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCC--cCceEEEEeCCHHHHHHHHHh-CCcEECC-----E
Confidence 4789999999999999999999764 3454444443322221 224699999999999999888 8777632 3
Q ss_pred eeEEEecc
Q 009888 87 KAIVEYAP 94 (523)
Q Consensus 87 ~A~VEfAP 94 (523)
...|++|-
T Consensus 97 ~l~V~~a~ 104 (116)
T 1x4b_A 97 VVEPKRAV 104 (116)
T ss_dssp EEEEECCS
T ss_pred EEEEEECC
Confidence 56777764
No 117
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.60 E-value=0.01 Score=52.09 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|++||+.+|++++.+.+... +.|............ ....-|||.|.+.++.....+.++|+.|. |
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g- 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLG---D- 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECTTTC--SEEEEEEEEESSSSHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEEC---C-
Confidence 566899999999999999999999875 345555544332211 12346999999999999999999999882 2
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..-.|+||
T Consensus 184 -~~l~v~~a 191 (198)
T 2yh0_A 184 -KKLLVQRA 191 (198)
T ss_dssp -EECEEEES
T ss_pred -EEEEEEEC
Confidence 25667776
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.58 E-value=0.0039 Score=52.06 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCce-eEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkv-dwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+.+..+|.|++||+.+||+++.+.+... +.+ .....+..+ ..+ .-.-|||.|.+.+++...++. +++.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~v~i~~d~-~g~--~~G~afV~F~~~~~a~~Al~~-~~~~~~g-- 83 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI--PVDENAVHVLVDN-NGQ--GLGQALVQFKNEDDARKSERL-HRKKLNG-- 83 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS--CCCSTTEEECCCT-TSS--CSSCEEEECSSHHHHHHHGGG-CSEEETT--
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC--CCcCCeEEEEECC-CCC--cceEEEEEECCHHHHHHHHHh-CCCccCC--
Confidence 5677899999999999999999999875 334 222333222 111 123599999999999998887 8766632
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|++|-
T Consensus 84 ---r~i~v~~a~ 92 (114)
T 2cpy_A 84 ---REAFVHVVT 92 (114)
T ss_dssp ---EEEEEEEEC
T ss_pred ---eEEEEEECC
Confidence 245666663
No 119
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.011 Score=47.45 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=54.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|.+||+.+||+++.+.+..+ +.|... +.-+...+ -|||.|.+.+++...++ ++|+.|.+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v--~~~~~~g~-----~afV~f~~~~~a~~ai~-l~g~~~~g~--- 72 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASV--VMDKDKGV-----FAIVEMGDVGAREAVLS-QSQHSLGGH--- 72 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEE--EECSSSCC-----EEEEEESSHHHHHHHHT-CSCCEETTE---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEE--EEcCCCCc-----EEEEEECCHHHHHHHHh-cCCeEECCE---
Confidence 445699999999999999999999864 344432 11111111 89999999999999999 999987532
Q ss_pred eeeeEEEecc
Q 009888 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
...|++|.
T Consensus 73 --~l~V~~a~ 80 (94)
T 2e5g_A 73 --RLRVRPRE 80 (94)
T ss_dssp --ECCCBCSC
T ss_pred --EEEEEECC
Confidence 44556554
No 120
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.52 E-value=0.0075 Score=52.29 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=59.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|.+||+.+||+++.+.+... +.|.....+.. .-.-|||.|.+.++.....+.++|+.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 137 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARN-------PPGFAFVEFEDPRDAADAVRELDGRTLCG--- 137 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSS-------SCSEEEEEESSHHHHHHHHHHHSSSCSSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeC-------CCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 35655554432 13479999999999999999999998732
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|+||-
T Consensus 138 --~~l~v~~a~ 146 (150)
T 2i2y_A 138 --CRVRVELSN 146 (150)
T ss_dssp --SCCEEEECC
T ss_pred --eEEEEEEcC
Confidence 245677763
No 121
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.02 Score=48.33 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=58.7
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeee
Q 009888 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA 88 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A 88 (523)
+|.|++||+.+||+++.+.+... +.|....++..+.. ....-|||.|.+.+++....+.++|..|.+ ...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~i 71 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVG--GPIANIKIMIDKNN---KNVNYAFVEYHQSHDANIALQTLNGKQIEN-----NIV 71 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGG--SCEEEEEEECCCC----CCEEEEEEEESSHHHHHHHHHHHTTCEETT-----EEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhc--CCeEEEEEEECCCC---CCCCEEEEEeCCHHHHHHHHHHcCCCccCC-----Cee
Confidence 68999999999999999999875 35665555543321 123469999999999999999999998832 355
Q ss_pred EEEeccCC
Q 009888 89 IVEYAPSQ 96 (523)
Q Consensus 89 ~VEfAPYQ 96 (523)
.|+++.-.
T Consensus 72 ~v~~~~~~ 79 (166)
T 3md3_A 72 KINWAFQS 79 (166)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 67776443
No 122
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.51 E-value=0.011 Score=55.57 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=60.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+...|.|++||+.+|++++.+.+..+ +.|....+++++ ..-|||.|.+.++...-++.++|+.|.+.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~g---- 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRLVPGR-------HDIAFVEFDNEVQAGAARDALQGFKITQN---- 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEEecCC-------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC----
Confidence 56789999999999999999999875 456666666544 24899999999999999999999888732
Q ss_pred eeeEEEec
Q 009888 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
..-.|+||
T Consensus 273 ~~l~v~~a 280 (282)
T 3pgw_A 273 NAMKISFA 280 (282)
T ss_pred CEEEEEEe
Confidence 25566765
No 123
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.48 E-value=0.0084 Score=47.61 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=54.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+.+..+|.|++||+.+||+++.+.+...-. ..+...... .. .....-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-- 84 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EK--GMPTGEAMVAFESRDEATAAVIDLNDRPIGS-- 84 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---TT--SCEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---CC--CCEeeEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 345689999999999999999998876421 112222211 10 1122459999999999999999999998743
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
....|++|
T Consensus 85 ---r~l~v~~a 92 (95)
T 2ek1_A 85 ---RKVKLSGP 92 (95)
T ss_dssp ---EECEEECC
T ss_pred ---cEEEEEec
Confidence 24566665
No 124
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.47 E-value=0.015 Score=53.67 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+.+..+|.|++||+ .+||+++.+.+... +.|....++..+ ..-|||.|.+.+++....+.++|..|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~--G~i~~v~i~~~~-------~g~afV~F~~~~~A~~Ai~~l~g~~~~g-- 99 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG-- 99 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHH--TCEEEEEECCTT-------SCCEEEEESCHHHHHHHHHHHTTCBCSS--
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 45678999999999 99999999999865 346555554332 2349999999999999999999998843
Q ss_pred CCeeeeEEEeccCCCC
Q 009888 83 GAQFKAIVEYAPSQRV 98 (523)
Q Consensus 83 Gne~~A~VEfAPYQKv 98 (523)
....|++|..+..
T Consensus 100 ---~~l~v~~a~~~~~ 112 (229)
T 2adc_A 100 ---KPIRITLSKHQNV 112 (229)
T ss_dssp ---SBCEEECCSCCCC
T ss_pred ---eEEEEEEecCccc
Confidence 3567888865543
No 125
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.43 E-value=0.0091 Score=46.54 Aligned_cols=68 Identities=9% Similarity=0.218 Sum_probs=52.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccC--CC-------ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhc
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF--ND-------RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLN 74 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~--~g-------kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fd 74 (523)
..+..+|.|.+||+.+|++++.+.+.... .+ .+........ -.-|||.|.+.+++.... .++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--------kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--------KNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--------SSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--------CcEEEEEcCCHHHHHHHH-hcC
Confidence 34568999999999999999999887651 12 4554443321 357999999999999999 999
Q ss_pred CCeeEe
Q 009888 75 GHVFVN 80 (523)
Q Consensus 75 G~vFvD 80 (523)
|+.|.+
T Consensus 74 g~~~~g 79 (87)
T 2hzc_A 74 GIIFQG 79 (87)
T ss_dssp TCEETT
T ss_pred CCEECC
Confidence 998743
No 126
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.40 E-value=0.02 Score=48.00 Aligned_cols=82 Identities=13% Similarity=0.251 Sum_probs=60.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC--CeeEeC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG--HVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG--~vFvDs 81 (523)
..+..+|.|++||+.+||+++.+.+.+. +.|.....+.+ -.-|||.|.+.++....++.+++ ..| +
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~- 79 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKG--------KNQAFLELATEEAAITMVNYYSAVTPHL-R- 79 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHHHSCCEE-T-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhccCCceE-C-
Confidence 3456789999999999999999988875 35655555443 34699999999999988887764 333 2
Q ss_pred CCCeeeeEEEeccCCCCCC
Q 009888 82 KGAQFKAIVEYAPSQRVPK 100 (523)
Q Consensus 82 KGne~~A~VEfAPYQKvPk 100 (523)
| ....|+||-.+.+-.
T Consensus 80 -G--r~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 80 -N--QPIYIQYSNHKELKT 95 (101)
T ss_dssp -T--EECEEEECSCSSCCC
T ss_pred -C--cEEEEEEcCcccCcC
Confidence 2 256899987665443
No 127
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.40 E-value=0.013 Score=50.25 Aligned_cols=83 Identities=11% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC--CeeEe
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG--HVFVN 80 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG--~vFvD 80 (523)
.+.+..+|-|++||+.+||+++.+.+.+. |.|.....+.+ -.-|||.|.+.++...-++.+++ ..| +
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~--------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l-~ 80 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG--------KNQAFIEMNTEEAANTMVNYYTSVTPVL-R 80 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHTTSCCEE-T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC--------CCEEEEEECCHHHHHHHHHHhccCCceE-C
Confidence 36788999999999999999999999875 35666665554 24699999999999999998875 333 2
Q ss_pred CCCCeeeeEEEeccCCCCCC
Q 009888 81 EKGAQFKAIVEYAPSQRVPK 100 (523)
Q Consensus 81 sKGne~~A~VEfAPYQKvPk 100 (523)
. .+..|+||-.+.+..
T Consensus 81 G----r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 81 G----QPIYIQFSNHKELKT 96 (105)
T ss_dssp T----EECCBCCCSSSSCCC
T ss_pred C----EEEEEEEcCCCCCCc
Confidence 2 256688886655443
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.38 E-value=0.021 Score=48.68 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=63.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee-EeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF-VNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF-vDsK 82 (523)
..|...|-|++||+..||+++.+.+.+. |.|.....++.+ .-|+|.|.+.++...-.+.+++..+ ++.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~k--------g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKK--------RQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTT--------TEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCC--------CEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 4566789999999999999999999885 467766665432 3699999999999999999998753 4433
Q ss_pred CCeeeeEEEeccCCCC
Q 009888 83 GAQFKAIVEYAPSQRV 98 (523)
Q Consensus 83 Gne~~A~VEfAPYQKv 98 (523)
+..|+||=.+.+
T Consensus 88 ----~i~V~~S~~k~l 99 (100)
T 3r27_A 88 ----PAFVNYSTSQKI 99 (100)
T ss_dssp ----EEEEEECSCSCC
T ss_pred ----EEEEEecccccc
Confidence 678888865543
No 129
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.36 E-value=0.011 Score=61.21 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=60.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+..+|.|.+||+.+|+++|.+.|..+ +.|....++..+...+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~--~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----- 171 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGK--PRGYAFIEYEHERDMHSAYKHADGKKIDG----- 171 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCC--ccceEEEeeccHHHHHHHHHHcCCCEECC-----
Confidence 44799999999999999999999874 3455544443322221 23469999999999999999999998832
Q ss_pred eeeEEEeccCC
Q 009888 86 FKAIVEYAPSQ 96 (523)
Q Consensus 86 ~~A~VEfAPYQ 96 (523)
....|+||--.
T Consensus 172 r~i~V~~a~~~ 182 (437)
T 3pgw_S 172 RRVLVDVERGR 182 (437)
T ss_pred EEEEEEEeCCC
Confidence 35778887643
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.35 E-value=0.0072 Score=49.22 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=51.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCC-CCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGK-SSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK-~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
+....+|.|++||+.+||+++.+.+... + |.....+..+ .+.+ .-.-|||.|.+.+++.... .++|+.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~--~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPER--LKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS--C-EEEEECSCCTTTTCC--CCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEecCCcCCc--cCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 4567899999999999999999999875 4 6655554332 1111 1236999999999999999 899998743
No 131
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.33 E-value=0.012 Score=51.03 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+|++++.+.+... +.|... ... ...-.-|||.|.+.++.....+.++|+.|-+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~-----~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 163 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-----SQD--GKSKGIAYIEFKSEADAEKNLEEKQGAEIDG--- 163 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE-----CSS--SSCCSEEEEECSSHHHHHHHHHHHTEEEETT---
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe-----cCC--CCCceEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 3456899999999999999999999874 345433 111 1123469999999999999999999987742
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
..-.|+||
T Consensus 164 --~~i~v~~a 171 (175)
T 1fje_B 164 --RSVSLYYT 171 (175)
T ss_dssp --EEEEEEEC
T ss_pred --eEEEEEec
Confidence 34677777
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.29 E-value=0.01 Score=51.87 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+..+|.|++||+.+|++++.+.|...+. |.|....... .. ..-..|||.|.+.++....++.++|+.|.+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr- 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SD--DNSGKAYIVFATQESAQAFVEAFQGYPFQGN- 100 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CC--SSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CC--CcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-
Confidence 45689999999999999987654443331 3453332211 11 1134599999999999999999999987543
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
.-.|+||-
T Consensus 101 ----~l~V~~a~ 108 (127)
T 2a3j_A 101 ----PLVITFSE 108 (127)
T ss_dssp ----CCEEEECC
T ss_pred ----EEEEEEcc
Confidence 55788774
No 133
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.28 E-value=0.0071 Score=57.27 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
..++|.|.+||+.+||+++.+.+..+-...|.....+.-+.+.+ .-.-|||.|.+.+++...++.++++.|...
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~--skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr---- 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ--SKGFALVGVGSEASSKKLMDLLPKRELHGQ---- 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC--EEEEEEEEESCTTHHHHHHTTSTTSCBTTB----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHcCCCeECCE----
Confidence 56789999999999999999999764211565555543332221 123599999999999999999999987532
Q ss_pred eeeEEEec
Q 009888 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
...|++|
T Consensus 141 -~l~V~~a 147 (229)
T 3q2s_C 141 -NPVVTPV 147 (229)
T ss_dssp -CCEEEEC
T ss_pred -EeEEEEC
Confidence 4567776
No 134
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.26 E-value=0.011 Score=51.90 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=56.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-+... ....-|||.|.+.+++....+. +++.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-- 81 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPNTK--RSRGFGFVTYATVEEVDAAMNA-RPHKVDG-- 81 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHT-CSCEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEEcCCCC--CccceEEEEeCCHHHHHHHHhc-CCCEECC--
Confidence 35567899999999999999999999875 345554444322211 1234699999999999998877 6665522
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|+++.
T Consensus 82 ---~~l~v~~~~ 90 (196)
T 1l3k_A 82 ---RVVEPKRAV 90 (196)
T ss_dssp ---EECEEEECC
T ss_pred ---EEeeeeccc
Confidence 234566554
No 135
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.23 E-value=0.022 Score=50.56 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCceEEEecCCC-CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 6 QRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 6 ~r~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
...+|.|++||+ .+||+++.+.+..+ +.|.....+..+ ..-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~--G~i~~v~i~~~~-------~g~afV~f~~~~~a~~A~~~l~~~~~~g---- 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG---- 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTT--CCCSEEECSTTC-------SSCCEEECTTTHHHHHHHHHHTTCCCSS----
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhCCCeecC----
Confidence 357899999999 99999999999864 345544444322 2359999999999999999999998833
Q ss_pred eeeeEEEeccCCC
Q 009888 85 QFKAIVEYAPSQR 97 (523)
Q Consensus 85 e~~A~VEfAPYQK 97 (523)
....|++|..+.
T Consensus 69 -~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 -KPIRITLSKHQN 80 (198)
T ss_dssp -CCCEEEECCCCS
T ss_pred -eEEEEEEecCCC
Confidence 356788876554
No 136
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.23 E-value=0.0062 Score=48.56 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=49.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
+.+|.|++||+.+||+++.+.+...-...+.....+..+... ..-.-|||.|.+.+++...++.++|+.|..
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g--~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC--CEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC--ccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 468999999999999999999876521134333333322221 113459999999999999999999998743
No 137
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.02 Score=49.94 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=62.3
Q ss_pred CCCceEEEec--CCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 5 LQRTKVVIRH--LPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 5 ~~r~KVVIRr--LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+..+|.|++ ||..+||+++.+.+..+ |.|......++ -.-|||.|.+.++...-++.++|..|.+.-
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~--------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN--------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTT--------CSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 3456799955 99999999999999876 35665554433 247999999999999999999999986555
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
|.-.+..|.||-
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 555667788774
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.20 E-value=0.0071 Score=46.02 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=45.3
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+|.|++||+.+||+++.+.+... +.+........+.+. ....-|||.|.+.+++....+. +++.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTN--KRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCCS--SSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--CcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 58899999999999999988875 234333322221111 1233599999999999988875 66665
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.19 E-value=0.011 Score=51.55 Aligned_cols=82 Identities=10% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC-eeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH-VFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~-vFvDsK 82 (523)
..+..+|.|++||+..||+++.+.+.+. |.|.....+.+ -.-|||.|.+.++....++.+++. ..++.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~--------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG--------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGG--------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 4566889999999999999999999875 34655555543 246999999999999988888753 122222
Q ss_pred CCeeeeEEEeccCCCCC
Q 009888 83 GAQFKAIVEYAPSQRVP 99 (523)
Q Consensus 83 Gne~~A~VEfAPYQKvP 99 (523)
...|+||-.+.+-
T Consensus 98 ----~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 ----PIYIQFSNHKELK 110 (119)
T ss_dssp ----CCEEEECSSSSCC
T ss_pred ----EEEEEEccCCCCC
Confidence 5688988655443
No 140
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.0093 Score=45.45 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=47.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
++|.|++||+.+|++++.+.+... +.+........+.+. ....-|||.|.+.+++....+.++ +.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCSS--SCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEecCCCCC--CcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 478999999999999999988875 234333333322211 123479999999999999999888 544
No 141
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.027 Score=45.56 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+... ..-.-|||.|.+.+++...++ +++.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~--~~~~~~--- 81 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTG--HSKGFGFVRFTEYETQVKVMS--QRHMID--- 81 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHHH--SCEEET---
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCC--CccceEEEEECCHHHHHHHHH--cCCeeC---
Confidence 35567899999999999999999999875 345544444332221 122459999999999988877 344332
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
| ....|++|--.
T Consensus 82 g--~~l~v~~a~~~ 93 (103)
T 2cqg_A 82 G--RWCDCKLPNSK 93 (103)
T ss_dssp T--EEEEEECCCTT
T ss_pred C--eEEEEEecCCC
Confidence 1 25677877544
No 142
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.15 E-value=0.013 Score=50.07 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHH
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAEL 72 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~ 72 (523)
+..+|.|++||+.+||+++.+.+... |.|.....+..+.+.+ .-.-|||.|.+.+++....+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY--GTVTDLKIMKDPATGR--SRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT--CCEEEEECCCCTTTSS--CCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEECCCCCC--ccceEEEEEccHHHHHHHHhc
Confidence 45799999999999999999999875 3566555443322211 123599999999999988885
No 143
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.12 E-value=0.0075 Score=47.57 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=54.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeee
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFK 87 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~ 87 (523)
.+|.|++||+.+||+++.+.+... +.|........+.+. ..-.-|||.|.+.+ ....++.++|+.|.+. .
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-----~ 71 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETK--KPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-----T 71 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSC--CCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-----S
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCC--CcceEEEEEECCHH-HHHHHHHhCCCEECCe-----E
Confidence 478999999999999998888764 245444443322221 12356999999999 9999999999987532 4
Q ss_pred eEEEeccCC
Q 009888 88 AIVEYAPSQ 96 (523)
Q Consensus 88 A~VEfAPYQ 96 (523)
..|++|.-.
T Consensus 72 l~V~~a~~~ 80 (90)
T 2ki2_A 72 IRVTEANPK 80 (90)
T ss_dssp CSEEEC---
T ss_pred EEEEEcCCC
Confidence 566666443
No 144
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.11 E-value=0.024 Score=53.17 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=57.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
...+..+|.|++||+.+||+++.+.|..++. +.|....... . ...-.-|||.|.+.++....++.++|..|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----S-LKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----C-CCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 3566789999999999999996643433331 3454444332 1 1123469999999999999999999988854
Q ss_pred CCCCeeeeEEEec
Q 009888 81 EKGAQFKAIVEYA 93 (523)
Q Consensus 81 sKGne~~A~VEfA 93 (523)
....|+||
T Consensus 80 -----~~l~v~~a 87 (282)
T 3pgw_A 80 -----KPMRIQYA 87 (282)
T ss_pred -----cEEEEEEe
Confidence 35678887
No 145
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.09 E-value=0.023 Score=48.12 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=58.7
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe-eEeC
Q 009888 4 PLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-FVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v-FvDs 81 (523)
+.+..+|-|++||+ .+||+++.+.+.++ |.|.....+..+ .-|||.|.+.++....++.+++.. -++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~k--------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKI--------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSS--------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCC--------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 45678999999999 99999999988875 457666655432 249999999999999999888653 1222
Q ss_pred CCCeeeeEEEecc
Q 009888 82 KGAQFKAIVEYAP 94 (523)
Q Consensus 82 KGne~~A~VEfAP 94 (523)
.+..|+||-
T Consensus 82 ----r~l~V~~a~ 90 (102)
T 1x4d_A 82 ----KPVRVHLSQ 90 (102)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEECC
Confidence 256788886
No 146
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.08 E-value=0.031 Score=46.42 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=53.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+||+.+||+++.+.+... |.|.....+..+.+. ..-.-|||.|.+.+++...++.. ++.| +.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg--~~kg~afV~f~~~~~A~~Ai~~~-~~~l-~g- 93 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQS-RHEL-DS- 93 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTC--CCTTCEEEEESSHHHHHHHHHSS-CEEE-TT-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCC--CcCcEEEEEECCHHHHHHHHHHC-CCcC-CC-
Confidence 45677899999999999999999999875 345554443322211 12346999999999999988875 3333 22
Q ss_pred CCeeeeEEEecc
Q 009888 83 GAQFKAIVEYAP 94 (523)
Q Consensus 83 Gne~~A~VEfAP 94 (523)
....|++|-
T Consensus 94 ---~~l~V~~a~ 102 (109)
T 2rs2_A 94 ---KTIDPKVAF 102 (109)
T ss_dssp ---EEEEEEECC
T ss_pred ---EEEEEEEcc
Confidence 245677663
No 147
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.05 E-value=0.016 Score=51.48 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=58.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCC-ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
+...|.|++||+.+|++++.+.+... + .+.....++-. -.-|||.|.+.++.....+.++|..|-+.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~g--- 186 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQKD-------RKMALIQMGSVEEAVQALIDLHNHDLGEN--- 186 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESSTT-------SSCEEEECSSHHHHHHHHHHHTSSCCSSC---
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhcCCccCCC---
Confidence 46789999999999999999999876 4 56655654421 24799999999999999999999988312
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..-.|+||
T Consensus 187 -~~l~v~~a 194 (198)
T 1qm9_A 187 -HHLRVSFS 194 (198)
T ss_dssp -CSCCEEEE
T ss_pred -CeEEEEee
Confidence 24556665
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.04 E-value=0.036 Score=47.58 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=59.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-Cc------eeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DR------YNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH 76 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gk------vdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~ 76 (523)
..+..+|.|++||+.+|++++.+.+..+-. .. ++......|+ ...-|||.|.+.+++...++.++|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~------~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGR------MKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETT------TEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCC------cccEEEEEeCCHHHHHHHHHHhCCC
Confidence 456789999999999999999999987531 01 1222222222 2457999999999999999999999
Q ss_pred eeEeCCCCeeeeEEEeccC
Q 009888 77 VFVNEKGAQFKAIVEYAPS 95 (523)
Q Consensus 77 vFvDsKGne~~A~VEfAPY 95 (523)
.|. | ....|+||-.
T Consensus 116 ~~~---g--~~l~V~~a~~ 129 (143)
T 3egn_A 116 VLF---G--KPMVVQFARS 129 (143)
T ss_dssp EET---T--EECEEEECCC
T ss_pred EeC---C--cEEEEEECCC
Confidence 983 2 3567888843
No 149
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.04 E-value=0.022 Score=52.62 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=59.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCC-ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
+..+|.|++||+.+|++++.+.+... + .|....+++-. -..|||.|.+.++.....+.++|..|-+.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~~~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g--- 217 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQKD-------RKMALIQMGSVEEAVQALIDLHNHDLGEN--- 217 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEEEEECSSS-------TTCEEEEESSHHHHHHHHHHHTTCBSSSS---
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeEEEEEECC-------CcEEEEEECCHHHHHHHHHHHCCCccCCC---
Confidence 35789999999999999999999876 4 67666665521 24799999999999999999999988412
Q ss_pred eeeeEEEec
Q 009888 85 QFKAIVEYA 93 (523)
Q Consensus 85 e~~A~VEfA 93 (523)
..-.|+||
T Consensus 218 -~~l~v~~a 225 (229)
T 2adc_A 218 -HHLRVSFS 225 (229)
T ss_dssp -CBCEEEEC
T ss_pred -CeEEEEEe
Confidence 24567766
No 150
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.03 E-value=0.015 Score=52.00 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
...+|.|++||+.+||+++.+.+..+-.-.|....++..+...+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~--skGfaFV~f~~~~~A~~Ai~~lng~~~~G----- 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ--SKGYAEVVVASENSVHKLLELLPGKVLNG----- 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC--EEEEEEEEESCHHHHHHHHHHSTTCEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 45799999999999999999999765211455555543333221 23459999999999999999999998743
Q ss_pred eeeEEEec
Q 009888 86 FKAIVEYA 93 (523)
Q Consensus 86 ~~A~VEfA 93 (523)
....|++|
T Consensus 127 r~l~V~~a 134 (156)
T 3n9u_C 127 EKVDVRPA 134 (156)
T ss_dssp EECEEEEC
T ss_pred eEeEEEEc
Confidence 24567766
No 151
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.018 Score=47.97 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=52.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCC-CCCcceeEEEEecCcccHHHHHHHh---cCCeeE
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSY-KHQRYSRAYVELKKPAGVFEFAELL---NGHVFV 79 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~-Kp~~ySRAYI~Fkn~Edl~~F~d~f---dG~vFv 79 (523)
.....+|.|.+||+.+||+++.+.+... +.|. ...+.-+... .-..-.-|||.|.+.+++...++.+ +|+.|+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRF--GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTT--CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEE
Confidence 4566899999999999999999999875 3454 3333221111 0112346999999999999888887 787665
Q ss_pred eC
Q 009888 80 NE 81 (523)
Q Consensus 80 Ds 81 (523)
-.
T Consensus 82 ~~ 83 (114)
T 2dnl_A 82 CV 83 (114)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.99 E-value=0.012 Score=49.26 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=57.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
..+|.|++||+.+||+++.+.+..+ +.|........+... ....-|||.|.+.+++.... .++|+.|.+ .
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 105 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSG--HPKGYAYIEFAERNSVDAAV-AMDETVFRG-----R 105 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTS--SCEEEEEEEESSHHHHHHHH-TTTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCC--CcccEEEEEECCHHHHHHHH-hcCCCeECC-----e
Confidence 4689999999999999999999875 345444433322211 12457999999999999988 799998832 3
Q ss_pred eeEEEecc
Q 009888 87 KAIVEYAP 94 (523)
Q Consensus 87 ~A~VEfAP 94 (523)
...|++|-
T Consensus 106 ~l~V~~a~ 113 (124)
T 2jwn_A 106 TIKVLPKR 113 (124)
T ss_dssp ECEEEESS
T ss_pred EEEEEECC
Confidence 56778774
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.93 E-value=0.018 Score=53.26 Aligned_cols=84 Identities=10% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+|..-++|.|++||+.+||+++.+.+..+ |.|.....+.. . .---|||.|.+.++...-++.++|+.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~k-----~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~- 112 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTK-----N-NQFQALLQYADPVSAQHAKLSLDGQNIYNA- 112 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEES-----S-SCEEEEEEESCHHHHHHHHHHSTTBCSSSS-
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEeC-----C-CCCEEEEEECCHHHHHHHHHHhCCCEecCC-
Confidence 45566888999999999999999999876 34544332211 1 123599999999999999999999998753
Q ss_pred CCeeeeEEEeccCCC
Q 009888 83 GAQFKAIVEYAPSQR 97 (523)
Q Consensus 83 Gne~~A~VEfAPYQK 97 (523)
...-.|+||--..
T Consensus 113 --g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 113 --CCTLRIDFSKLTS 125 (164)
T ss_dssp --CSCEEEEECSSSS
T ss_pred --CcEEEEEEecCCc
Confidence 2256889885443
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.87 E-value=0.0029 Score=51.14 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
+.+..+|.|.+||+.+||+++.+.+...-. ..+- ..-..|. ...-|||.|.+.+++...++ ++|+.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~-~~~~~g~------~~g~afV~f~~~~~a~~A~~-l~g~~~~g- 84 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDVRTGT------NRKFGYVDFESAEDLEKALE-LTGLKVFG- 84 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEEEEET------TTTEEEEEESSHHHHHHHHH-GGGCCBTT-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-ecCCCCC------cCcEEEEEECCHHHHHHHHh-cCCcEECC-
Confidence 346789999999999999999888876421 1110 0000111 12359999999999999998 99998752
Q ss_pred CCCeeeeEEEecc
Q 009888 82 KGAQFKAIVEYAP 94 (523)
Q Consensus 82 KGne~~A~VEfAP 94 (523)
....|++|-
T Consensus 85 ----~~l~V~~a~ 93 (101)
T 1fj7_A 85 ----NEIKLEKPK 93 (101)
T ss_dssp ----BCCEEECCS
T ss_pred ----cEEEEEEcC
Confidence 245677763
No 155
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.83 E-value=0.028 Score=46.93 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
...+..+|-|.+||+.+||+++.+.+.+. |.|.....+..+. . ..-.-|||.|.+.+++...++ .+++.|-+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~-g--~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH-K--AFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCT-T--SCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCC-C--CCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 35567899999999999999999999874 3565544443222 1 112359999999999999888 78887643
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.81 E-value=0.024 Score=51.77 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
..+...|-|++||+.+||+++.+.+... |.|.....+.-+.+. ....-|||.|.+.+++..-++.+++..|.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPA--GPILSIRVCRDMITR--RSLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEecccCCC--CccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 3456789999999999999999999875 355554443322221 12346999999999999999999998764
No 157
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.78 E-value=0.032 Score=52.36 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=56.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+..+|.|++||+.+||+++.+.+... | +..... |+. -.-|||.|.+.++.....+.++|..|.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~--G-i~~~~~--~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~g----- 84 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDY--E-LKYCFV--DKY------KGTAFVTLLNGEQAEAAINAFHQSRLRE----- 84 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTS--C-EEEEEE--ETT------TTEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--C-CEEEEE--ecC------CCEEEEEeCCHHHHHHHHHHcCCCeeCC-----
Confidence 56889999999999999999998875 3 444333 221 2369999999999999999999998743
Q ss_pred eeeEEEecc
Q 009888 86 FKAIVEYAP 94 (523)
Q Consensus 86 ~~A~VEfAP 94 (523)
....|+++|
T Consensus 85 ~~i~v~~~~ 93 (284)
T 3smz_A 85 RELSVQLQP 93 (284)
T ss_dssp EECEEEECC
T ss_pred eEEEEEecC
Confidence 355677765
No 158
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.74 E-value=0.033 Score=45.73 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=56.3
Q ss_pred CceEEEecCCCCC------CHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 7 RTKVVIRHLPPSL------SQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 7 r~KVVIRrLPP~L------TEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
..+|.|.+||+.. |++++.+.+... |.|..... + .... ..-.-|||.|.+.+++..-++.++|+.|..
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i-~-~~~g--~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY-P-EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEEC-C-CBTT--BSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEe-e-CCCC--CeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 5799999999999 789999988875 34555443 3 2111 123469999999999999999999988743
Q ss_pred CCCCeeeeEEEec
Q 009888 81 EKGAQFKAIVEYA 93 (523)
Q Consensus 81 sKGne~~A~VEfA 93 (523)
. ..-.|++|
T Consensus 89 ~----~~l~V~~a 97 (105)
T 2nlw_A 89 Q----HTFRVNLF 97 (105)
T ss_dssp T----CEEEEECS
T ss_pred C----ceEEEEEc
Confidence 2 14566666
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.73 E-value=0.017 Score=48.77 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+.+..+|.|++||+..||+++.+.+..+-. +.|.....+..+. . ..-.-|||.|.+.+++...++ ++++.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g--~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G--RQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-S--CEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-C--CCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 456788999999999999999999876421 1122222222221 1 123469999999999999888 888665
No 160
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.68 E-value=0.036 Score=45.44 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=49.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeE-EEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW-FCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw-fyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+.+..+|.|++||+..||+++.+.+... +.|.. ...+. +... ..-.-|||.|.+.+++...++. +++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~-~~~g--~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPV-DFQG--RSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCB-CSSS--CBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEE-CCCC--CcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 4567899999999999999999998874 34433 22221 1111 1124699999999999999887 77665
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.61 E-value=0.028 Score=49.18 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=55.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCe
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQ 85 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne 85 (523)
+..+|.|++||+.+|++++.+.+... +.|.....+...... ..-.-|||.|.+.+++....+. +++.|-+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~-~~~~~~G----- 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDRGSG--KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG----- 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHC-SCCEETT-----
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCC--CccceEEEEECCHHHHHHHHHh-CCcEECC-----
Confidence 44789999999999999999999864 456665555432221 1123599999999999888776 6665532
Q ss_pred eeeEEEeccCC
Q 009888 86 FKAIVEYAPSQ 96 (523)
Q Consensus 86 ~~A~VEfAPYQ 96 (523)
....|.+|.-.
T Consensus 173 ~~i~v~~a~~k 183 (196)
T 1l3k_A 173 HNCEVRKALSK 183 (196)
T ss_dssp EECEEEECC--
T ss_pred EEEEEEecCCh
Confidence 24667776433
No 162
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.57 E-value=0.037 Score=52.18 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
..+..+|.|++||+.+||+++.+.+... +.|........ -.-|||.|.+.+++......++|..|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~g~~i~g--- 85 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERY--GEPSEVFINRD--------RGFGFIRLESRTLAEIAKAELDGTILKS--- 85 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGG--CCCSEEEEETT--------TTEEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEeCC--------CcEEEEEECCHHHHHHHHHHcCCcEECC---
Confidence 4566899999999999999999999875 33444433211 2469999999999999999999998732
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
....|++|.
T Consensus 86 --~~l~v~~a~ 94 (261)
T 3sde_A 86 --RPLRIRFAT 94 (261)
T ss_dssp --EECEEEECC
T ss_pred --ceeEeeecc
Confidence 355677764
No 163
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.53 E-value=0.019 Score=47.36 Aligned_cols=72 Identities=21% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
++....+|.|++||+..||+++.+.+...-. +.|.....+..+. . ..-.-|||.|.+.+++...++ +++..|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g--~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-G--KRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-S--TTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-C--CEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 3567889999999999999999998886421 1133333332221 1 112469999999999999888 787665
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.52 E-value=0.02 Score=46.28 Aligned_cols=67 Identities=9% Similarity=0.147 Sum_probs=49.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.+..+|.|.+||+.+|++++.+.+... +.|........+ . ...-.-|||.|.+.+++....+ +++.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~Ai~--~~~~~ 73 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDR-T--GVSKGYGFVSFYNDVDVQKIVE--SQINF 73 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECT-T--SCEEEEEEEEESSCCCHHHHTT--CCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-C--CCccceEEEEECCHHHHHHHHh--CCCeE
Confidence 345789999999999999999999875 345555544433 2 1223569999999999998888 55544
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.50 E-value=0.098 Score=46.55 Aligned_cols=87 Identities=10% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
.+|..-++|.|++||..+||+++.+.+..+- .|.-..-+. + . .---|||.|.+.++...-++.++|..|.+.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~-~----~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~ 94 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFT-K----N-NQFQALLQYADPVSAQHAKLSLDGQNIYNA 94 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEE-E----T-TEEEEEEEESCHHHHHHHHHHHTTCEEETT
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEc-C----C-CCcEEEEEECCHHHHHHHHHHcCCCeecCC
Confidence 3567779999999999999999999998752 343322111 1 1 111399999999999999999999999872
Q ss_pred CCCeeeeEEEeccCCCCC
Q 009888 82 KGAQFKAIVEYAPSQRVP 99 (523)
Q Consensus 82 KGne~~A~VEfAPYQKvP 99 (523)
.-.-.|+||--..+.
T Consensus 95 ---~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 95 ---CCTLRIDFSKLTSLN 109 (130)
T ss_dssp ---EEEEEEEECSCSSCC
T ss_pred ---CcEEEEEecCCCcee
Confidence 346689999655443
No 166
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.45 E-value=0.022 Score=48.62 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=54.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeE--EEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC----ee
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW--FCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH----VF 78 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw--fyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~----vF 78 (523)
.+..+|.|++||+.+||+++.+.+..+- .|.. ...+..+... ..-.-|||.|.+. +....++.++|+ .|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G--~v~~~~v~i~~d~~tg--~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA--VLSSSNVRVIKDKQTQ--LNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC--CCCTTTEECCBCSSSS--SBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcceeeEEEEEcCCCC--CcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 4678999999999999999999998752 2321 2222222111 1124599999999 999999999998 54
Q ss_pred EeCCCCeeeeEEEec
Q 009888 79 VNEKGAQFKAIVEYA 93 (523)
Q Consensus 79 vDsKGne~~A~VEfA 93 (523)
... ...|+||
T Consensus 96 ~gr-----~l~V~~a 105 (131)
T 2m2b_A 96 DGK-----TINVEFA 105 (131)
T ss_dssp GGC-----CCCCEEC
T ss_pred CCE-----EEEEEEC
Confidence 322 3456666
No 167
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.42 E-value=0.029 Score=43.69 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=50.2
Q ss_pred ceEEEecCCCCC------CHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 8 TKVVIRHLPPSL------SQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 8 ~KVVIRrLPP~L------TEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
.+|.|.+||+.. ||+++.+.+... +.|..... + +... ..-.-|||.|.+.+++....+.++|+.|..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i-~-~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY-P-EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEEC-C-CBTT--BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEe-c-CCCC--cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 579999999999 789998888764 34554443 3 1111 123469999999999999999999988743
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.031 Score=47.42 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=48.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+..+|.|++||+..||+++.+.+.+. .|.....+..+. . . .-.-|||.|.+.+++...+ .++++.|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~-g-~-~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHV-G-R-NNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTT-C-C-CCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCC-C-C-CCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 35799999999999999999999886 244444443221 1 1 1246999999999999887 5787655
No 169
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.39 E-value=0.039 Score=45.61 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
.+....+|.|++||+.+||+++.+.+.+.- .+ ....+..+ .. ..---|||.|.+.+++...++ .+++.|-
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~-~v~i~~d~-~g--~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN--PM-RVHIEIGP-DG--RVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC--CS-EEEEEESS-SS--CEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--ce-EEEEEECC-CC--CEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 356778999999999999999999888753 22 22222222 11 112359999999999998885 5776653
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.38 E-value=0.078 Score=49.74 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=60.3
Q ss_pred CCCceEEEecCCCCC-CHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 5 LQRTKVVIRHLPPSL-SQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 5 ~~r~KVVIRrLPP~L-TEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
.+...|.|++||+.+ |++++.+.+... +.|.......... .....-|||.|.+.++.......++|+.| .|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g 253 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTFCQLACGQD---GQLKGFAVLEYETAEMAEEAQQQADGLSL---GG 253 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSEEEEEECSS---CCEEEEEEEECSSHHHHHHHHHHHTTCEE---TT
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC--CCeEEEEEEECCC---CCcccEEEEEeCCHHHHHHHHHHhCCCcc---CC
Confidence 456789999999997 999999999875 3455444443321 12345799999999999999999999998 22
Q ss_pred CeeeeEEEecc
Q 009888 84 AQFKAIVEYAP 94 (523)
Q Consensus 84 ne~~A~VEfAP 94 (523)
..-.|.||.
T Consensus 254 --~~l~v~~a~ 262 (284)
T 3smz_A 254 --SHLRVSFCA 262 (284)
T ss_dssp --EECEEEECC
T ss_pred --eEEEEEEec
Confidence 266788873
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.28 E-value=0.053 Score=50.17 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=60.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCCce--eEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCC
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRY--NWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 83 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkv--dwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 83 (523)
+..+|.|++||+.+||+++.+.+.+.- .| .-...++.+ . + ...-|||.|.+.++...-+..++|+.+... +
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v~~~~~~-~-~--~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~-~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSVKVFSGK-S-E--RSSSGLLEWDSKSDALETLGFLNHYQMKNP-N 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEEEECSCC-S-S--SSEEEEEECSSHHHHHHHHHHHTTCEECCS-S
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEEEcCC-C-C--CceEEEEEeCCHHHHHHHHHHhCCCCccCC-C
Confidence 345799999999999999999998753 23 334444443 1 1 126899999999999999999999987544 4
Q ss_pred CeeeeEEEec
Q 009888 84 AQFKAIVEYA 93 (523)
Q Consensus 84 ne~~A~VEfA 93 (523)
..++-+|.||
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 4666666665
No 172
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.27 E-value=0.033 Score=48.17 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCe-eEeC
Q 009888 4 PLQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-FVNE 81 (523)
Q Consensus 4 p~~r~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~v-FvDs 81 (523)
..+..+|-|++||+. +||+++.+.+.++ +.|.....+.. -.-|||.|.+.++....++.+++.. .++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRM--------KSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETT--------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecC--------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 456789999999998 9999999888875 34555555432 1369999999999999998886532 1222
Q ss_pred CCCeeeeEEEecc
Q 009888 82 KGAQFKAIVEYAP 94 (523)
Q Consensus 82 KGne~~A~VEfAP 94 (523)
+ ...|+||-
T Consensus 92 r----~l~V~~a~ 100 (112)
T 1x4f_A 92 R----CVKVDLSE 100 (112)
T ss_dssp S----CCEEEEEC
T ss_pred E----EEEEEECc
Confidence 2 46788873
No 173
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.16 E-value=0.02 Score=46.82 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCCceEEEecCCC------CCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 5 LQRTKVVIRHLPP------SLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 5 ~~r~KVVIRrLPP------~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.....|.|.+||+ .+|++++.+.+... +.|........+.+. ..-.-|||.|.+.+++...++.++|+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATG--KTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 3457899999999 99999999999874 345543322111111 1124599999999999999999999988
Q ss_pred EeCCCCeeeeEEEec
Q 009888 79 VNEKGAQFKAIVEYA 93 (523)
Q Consensus 79 vDsKGne~~A~VEfA 93 (523)
...+ .-.|++|
T Consensus 80 ~g~r----~l~V~~a 90 (100)
T 3ns6_A 80 DLKH----RLFLYTM 90 (100)
T ss_dssp SSSC----BCEEEES
T ss_pred CCCe----EEEEEEC
Confidence 5422 4455554
No 174
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.14 E-value=0.058 Score=50.80 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
....+|.|++||+.+|++++.+.+...- ..|....++.-.. ...-.-|||.|.+.+++....+.++|+.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~~i~~v~i~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 186 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDIN-VVALSIRLPSLRF---NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG---- 186 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTT-CCCCEEECC----------CCEEEEECSSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhC-CCeEEEEEEeCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEeCC----
Confidence 3567899999999999999999998752 1455444432221 1123469999999999999999999998832
Q ss_pred eeeeEEEeccCC
Q 009888 85 QFKAIVEYAPSQ 96 (523)
Q Consensus 85 e~~A~VEfAPYQ 96 (523)
....|++|.-+
T Consensus 187 -~~l~v~~a~~~ 197 (292)
T 2ghp_A 187 -YTLVTKVSNPL 197 (292)
T ss_dssp -EECEEEECCCC
T ss_pred -cEEEEEECCCC
Confidence 45677877533
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.14 E-value=0.038 Score=47.16 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=53.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
..+|.|++||+.+|++++.+.+... +.|........+... ..-.-|||.|.+.+++....+ .+|..|-+ .
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 156 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDKDTG--QSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-----R 156 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSSSSS--TTSEEEEEEESSHHHHHHHHH-CSEECSSS-----S
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHh-CCCEEeCC-----e
Confidence 4589999999999999999999875 345555544332221 122469999999999988877 56655532 2
Q ss_pred eeEEEec
Q 009888 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
...|+||
T Consensus 157 ~i~V~~a 163 (167)
T 2cjk_A 157 KIEIKRA 163 (167)
T ss_dssp CEEEEEC
T ss_pred EEEEeec
Confidence 4566665
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.12 E-value=0.045 Score=51.58 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=56.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+...|.|++||+.+||+++.+.+... |.|.....+..... ...-|||.|.+.+++....+ ++|..|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~----~~g~afV~f~~~~~A~~A~~-~~~~~~~g-- 107 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHC--GPIIHVDVADSLKK----NFRFARIEFARYDGALAAIT-KTHKVVGQ-- 107 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGG--SCEEEEEEEECTTS----SSEEEEEEESSHHHHHHHHT-TTTCEETT--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCC----CcEEEEEEECCHHHHHHHHH-hCCcEeCC--
Confidence 45668899999999999999999999875 34544444432211 13689999999999999985 88887733
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|++++..
T Consensus 108 ---~~i~v~~~~~~ 118 (292)
T 2ghp_A 108 ---NEIIVSHLTEC 118 (292)
T ss_dssp ---EECEEEECCSC
T ss_pred ---cEEEEEECCCC
Confidence 24566766433
No 177
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.15 Score=40.89 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+| .+||+++.+.+... +.|...... ..-..|||.|.+.+++...++.++|+.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--- 75 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD--------PPRNCAFVTYEKMESADQAVAELNGTQVE--- 75 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEE--------TTTTEEEEEESSHHHHHHHHHHTTTEEET---
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCeEC---
Confidence 3556789999997 99999999999875 345444332 11236999999999999999999999882
Q ss_pred CCeeeeEEEeccC
Q 009888 83 GAQFKAIVEYAPS 95 (523)
Q Consensus 83 Gne~~A~VEfAPY 95 (523)
| ....|+||--
T Consensus 76 g--~~l~v~~a~~ 86 (97)
T 1x5p_A 76 S--VQLKVNIARK 86 (97)
T ss_dssp T--EEEEEECCSS
T ss_pred C--eEEEEEECCC
Confidence 2 3567888743
No 178
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.03 E-value=0.059 Score=45.40 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=53.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
+.+..+|.|++||+.+||+++.+.+..+-. ..+....... . -..-.-|||.|.+.+++...++ ++++.|-+-
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~---~--g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr- 94 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP---N--GKATGEGFVEFRNEADYKAALC-RHKQYMGNR- 94 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT---T--SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS-
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC---C--CCCCeEEEEEECCHHHHHHHHH-hCCCeECCc-
Confidence 456689999999999999999998886421 1111222111 1 1113469999999999999988 888776332
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
...|++|
T Consensus 95 ----~i~V~~a 101 (124)
T 1wel_A 95 ----FIQVHPI 101 (124)
T ss_dssp ----CBEEEEE
T ss_pred ----EEEEEEC
Confidence 3455555
No 179
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.90 E-value=0.034 Score=49.08 Aligned_cols=71 Identities=20% Similarity=0.096 Sum_probs=49.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCC-ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+.+.++|.|++||+..||+++.+.+...-.- .|.....+..+. . ..-.-|||.|.+.+++..-++ ++++.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g--~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-G--RQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-S--CEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-C--CCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 4567899999999999999999999875210 022222222211 1 113369999999999999888 888665
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.85 E-value=0.092 Score=46.01 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCcee-EEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvd-wfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+.+..+|.|++||+..||+++.+.+.+. +-+. ....+..+. .+ .-.-|||.|.+.+++...++. ++..|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~-Gr--srGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPE-GK--ITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSS-SS--SCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCC-CC--CceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 4567899999999999999999999986 2221 333322221 11 124699999999999988875 55443
No 181
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.78 E-value=0.16 Score=40.80 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=49.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
++.+..+|.|.+||+.+||+++.+.+... |.|.....+. + .-.-|||.|.+.+++. .+++..|.- +
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~-~------srGfaFV~F~~~~~A~----~~~~~~~~~-~ 72 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPK-P------FRAFAFVTFADDKVAQ----SLCGEDLII-K 72 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCS-S------CCSEEEEEESCHHHHH----HHTTCEEEE-T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEee-C------CCCEEEEEECCHHHHH----HHcCCCccc-C
Confidence 46778999999999999999999999875 4565543322 1 1236999999999876 466664431 1
Q ss_pred CCeeeeEEEec
Q 009888 83 GAQFKAIVEYA 93 (523)
Q Consensus 83 Gne~~A~VEfA 93 (523)
-....|.+|
T Consensus 73 --g~~v~v~~a 81 (89)
T 3d2w_A 73 --GISVHISNA 81 (89)
T ss_dssp --TEEEEEEEC
T ss_pred --CEEEEEEEc
Confidence 234556655
No 182
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.71 E-value=0.079 Score=46.87 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecC-cccHHHHHHHhc
Q 009888 5 LQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK-PAGVFEFAELLN 74 (523)
Q Consensus 5 ~~r~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn-~Edl~~F~d~fd 74 (523)
..++-|.|..||+. .|+++|.+.+..+ +.|.|..|+.|... |||.|.+ .++...++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~t--------gfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKE--------GIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSE--------EEEEESSCHHHHHHHHHHTT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCE--------EEEEECCChHHHHHHHHHhh
Confidence 46788999999999 9999999999974 47999999988763 9999999 688888888763
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.66 E-value=0.074 Score=45.55 Aligned_cols=75 Identities=8% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccC--CC-------ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHF--ND-------RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH 76 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~--~g-------kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~ 76 (523)
+..+|.|++||+.+||+++.+.+.... .+ .+........ -.-|||.|.+.+++.... .++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~--------~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--------KNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT--------TTEEEEEESSHHHHHHHG-GGTTC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC--------CCEEEEEeCCHHHHHHHH-HhCCc
Confidence 457899999999999999999887751 11 3332222111 357999999999999998 89998
Q ss_pred eeEeCCCCeeeeEEEecc
Q 009888 77 VFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 77 vFvDsKGne~~A~VEfAP 94 (523)
.|.+ ....|+++.
T Consensus 74 ~~~g-----~~i~v~~~~ 86 (172)
T 2g4b_A 74 IFQG-----QSLKIRRPH 86 (172)
T ss_dssp EETT-----EECEEECCS
T ss_pred EecC-----ceeeecCCc
Confidence 8732 244566543
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=94.51 E-value=0.035 Score=47.97 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=56.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCC--C-ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFN--D-RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~--g-kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
.+.+..+|.|++||+.+||+++.+.+..... + .+. ....|+ .-.-|||.|.+.+++....+ ++|..|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~--~~~~~~------~~g~afV~f~~~~~a~~A~~-l~g~~~~ 79 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV--DVRTGT------NRKFGYVDFESAEDLEKALE-LTGLKVF 79 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC--EEEEET------TTTEEEEEESSHHHHHHHHH-GGGEEET
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE--ECCCCc------cccEEEEEECCHHHHHHHHh-cCCCEeC
Confidence 5778899999999999999998887766531 1 111 111111 13479999999999999884 9988776
Q ss_pred eCCCCeeeeEEEeccCC
Q 009888 80 NEKGAQFKAIVEYAPSQ 96 (523)
Q Consensus 80 DsKGne~~A~VEfAPYQ 96 (523)
+ ....|++|.-.
T Consensus 80 g-----~~l~v~~~~~~ 91 (175)
T 1fje_B 80 G-----NEIKLEKPKGR 91 (175)
T ss_dssp T-----EEEEEECCCCS
T ss_pred C-----eEEEEecCCCc
Confidence 2 24567776543
No 185
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=93.54 E-value=0.0065 Score=50.53 Aligned_cols=82 Identities=11% Similarity=0.184 Sum_probs=55.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeE--------EEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW--------FCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG 75 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw--------fyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG 75 (523)
..+..+|.|.+||+.+|++++.+.+..+- .|.. ...+..+.. .....-|||.|.+.+++...++.++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRET--GKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 34668899999999999999988887642 2321 111111010 11123699999999999999999999
Q ss_pred CeeEeCCCCeeeeEEEecc
Q 009888 76 HVFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 76 ~vFvDsKGne~~A~VEfAP 94 (523)
+.|.+. ...|++|-
T Consensus 80 ~~~~g~-----~l~V~~a~ 93 (116)
T 2lcw_A 80 KEFSGN-----PIKVSFAT 93 (116)
Confidence 887532 45666653
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.43 E-value=0.18 Score=44.20 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcce-eEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYS-RAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~yS-RAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
|..-++|.|.+||..+|++++.+.+..+ |.|.-..-+. + . . .|+|.|.+.++...-++.++|..|.+.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~-~----~---Gf~aFVef~~~~~A~~A~~~LnG~~i~g~- 90 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFK-R----N---GIQAMVEFESVLCAQKAKAALNGADIYAG- 90 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEE-S----S---SEEEEEEESSHHHHHHHHHHHTTCCCBTT-
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEe-C----C---CCEEEEEECCHHHHHHHHHHhCCCEecCC-
Confidence 3444667799999999999999999875 2343322222 1 1 4 599999999999999999999988652
Q ss_pred CCeeeeEEEeccCCC
Q 009888 83 GAQFKAIVEYAPSQR 97 (523)
Q Consensus 83 Gne~~A~VEfAPYQK 97 (523)
...-.|+||--..
T Consensus 91 --~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 91 --CCTLKIEYARPTR 103 (124)
T ss_dssp --BSEEEEECCSCSC
T ss_pred --CeEEEEEEecCCc
Confidence 3356788885443
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.31 E-value=0.11 Score=47.48 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=56.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
..+|.|++||+.+||+++.+.+... +.|.....+.-. ...-.-|||.|.+.+++..-++.++|+.|-+ .
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~d~----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-----~ 171 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----R 171 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET----TEEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred cccceECCcccccHHHHHHHHHhhc--CCeEEEEeeccC----CCCceEEEEEeCCHHHHHHHHHHhCCCEECC-----E
Confidence 4689999999999999999999875 345444332211 1112359999999999999999999998732 2
Q ss_pred eeEEEec
Q 009888 87 KAIVEYA 93 (523)
Q Consensus 87 ~A~VEfA 93 (523)
.-.|++|
T Consensus 172 ~i~V~~a 178 (213)
T 4f02_A 172 KVFVGRF 178 (213)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 5677776
No 188
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.00 E-value=0.091 Score=45.99 Aligned_cols=74 Identities=8% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccC--CC-------ceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCC
Q 009888 6 QRTKVVIRHLPPSLSQNDLLALFRDHF--ND-------RYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGH 76 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~eqL~p~~--~g-------kvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~ 76 (523)
...+|.|++||+.+||+++.+.+...- .+ .+..... |. .-.-|||.|.+.+++.... .++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~------~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQ------DKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ET------TTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cC------CCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 357899999999999999999887651 01 2322222 11 1246999999999999999 89998
Q ss_pred eeEeCCCCeeeeEEEec
Q 009888 77 VFVNEKGAQFKAIVEYA 93 (523)
Q Consensus 77 vFvDsKGne~~A~VEfA 93 (523)
.|.+ ....|+++
T Consensus 74 ~~~g-----~~i~v~~~ 85 (198)
T 2yh0_A 74 IFQG-----QSLKIRRP 85 (198)
T ss_dssp EETT-----EEEEEECC
T ss_pred EEcC-----ceEEEeCC
Confidence 8732 24556655
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.76 E-value=0.24 Score=46.57 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|++||+.+|++++.+.+... +.|.....+.... ...-.-|||.|.+.+++...++.+++..|.....
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~- 167 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVVVDDR---GRATGKGFVEFAAKPPARKALERCGDGAFLLTTT- 167 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETT---SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS-
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEeeeCCC---CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC-
Confidence 356789999999999999999999875 3565555443321 1123469999999999999999996655554221
Q ss_pred eeeeEEEeccC
Q 009888 85 QFKAIVEYAPS 95 (523)
Q Consensus 85 e~~A~VEfAPY 95 (523)
-.+..|++|--
T Consensus 168 ~r~i~v~~~~~ 178 (261)
T 3sde_A 168 PRPVIVEPMEQ 178 (261)
T ss_dssp CCBCEEEECCC
T ss_pred CceEEEeeccc
Confidence 23567777653
No 190
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.44 E-value=0.29 Score=49.92 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=64.4
Q ss_pred CCCCceEEEec--CCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeC
Q 009888 4 PLQRTKVVIRH--LPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 81 (523)
Q Consensus 4 p~~r~KVVIRr--LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDs 81 (523)
..+..+|.|.+ |+.++||+++.+.+..+ |.|.-....++ -+.|||.|.+.++....++.++|..+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~--------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN--------KPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTT--------CSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 45567899999 57899999999999985 46765555442 26999999999999999999999999888
Q ss_pred CCCeeeeEEEec
Q 009888 82 KGAQFKAIVEYA 93 (523)
Q Consensus 82 KGne~~A~VEfA 93 (523)
.|......|.|+
T Consensus 85 ~g~~~~ly~~~~ 96 (345)
T 3tht_A 85 LGQKITLYLNFV 96 (345)
T ss_dssp TSCEEECEEEEC
T ss_pred cCCceEEEEEEe
Confidence 786555566666
No 191
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.33 E-value=0.14 Score=40.27 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=49.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
.+..+|.|.+||+.+||+++.+.+... +.|.....+ .+ .-.-|||.|.+.+++. .+++..+.- .
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~-~~------~~g~afV~f~~~~~a~----~~~~~~~~~---~ 66 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIP-KP------FRAFAFVTFADDQIAQ----SLCGEDLII---K 66 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECC-SS------CCSCCEEECSCHHHHH----HTTTCEEEE---T
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEe-cC------CCCEEEEEECCHHHHH----HHhcCCcee---C
Confidence 456899999999999999999998875 334443332 11 1235999999998885 355554322 1
Q ss_pred eeeeEEEecc
Q 009888 85 QFKAIVEYAP 94 (523)
Q Consensus 85 e~~A~VEfAP 94 (523)
-....|++|.
T Consensus 67 g~~l~v~~a~ 76 (88)
T 1wf0_A 67 GISVHISNAE 76 (88)
T ss_dssp TEEEEEECCC
T ss_pred CEEEEEEecC
Confidence 2355677664
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.27 E-value=0.45 Score=43.92 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCceEEEecCC-CCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCC
Q 009888 6 QRTKVVIRHLP-PSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 84 (523)
Q Consensus 6 ~r~KVVIRrLP-P~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 84 (523)
+...|-|.+|| +.+|++++.+.+..+ |.|.....+..+ -.-|||.|.+.++...-++.++|..|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~--G~v~~v~i~~~~-------~g~afV~f~~~~~A~~Ai~~lng~~~~g---- 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY--GNVEKVKFMKSK-------PGAAMVEMADGYAVDRAITHLNNNFMFG---- 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT--SCEEEEEECTTS-------TTCEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc--CCeEEEEEecCC-------CCEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 56789999999 699999999999875 356555444321 2459999999999999999999998854
Q ss_pred eeeeEEEeccCCCC
Q 009888 85 QFKAIVEYAPSQRV 98 (523)
Q Consensus 85 e~~A~VEfAPYQKv 98 (523)
..-.|+||-.+.+
T Consensus 70 -~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 70 -QKMNVCVSKQPAI 82 (205)
T ss_dssp -EECEEEECSCSCC
T ss_pred -ceEEEEEccCCcc
Confidence 2467888866553
No 193
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.26 E-value=0.11 Score=45.11 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=47.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.+..+|.|++||...||+++.+.+..+-. +.+.-...+..+ .. ..---|||.|.+.+++..-++. +++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~g--r~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DG--RPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TS--CEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CC--CEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 45689999999999999999998887532 112222222211 11 1134699999999999988876 76543
No 194
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=93.07 E-value=0.19 Score=42.56 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=52.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
..-|+||+|+|..||+.+++.+... |.|..+..+. .-.-|++.|.+.++...-++.+++..+.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~--------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYL--------NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcC--------CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 4678999999999999999999875 3566666543 24679999999999999999999876543
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=92.59 E-value=0.47 Score=40.42 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.+.+..+|.|.+| .+||+++.+.+..+ +.|...... ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~--------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-- 100 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD--------PPRNCAFVTYEKMESADQAVAELNGTQVES-- 100 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEE--------TTTTEEEEECSSHHHHHHHHHHHTTCBCSS--
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 4567789999996 69999999999875 233333332 112369999999999999999999998732
Q ss_pred CCeeeeEEEeccCC
Q 009888 83 GAQFKAIVEYAPSQ 96 (523)
Q Consensus 83 Gne~~A~VEfAPYQ 96 (523)
....|+||--+
T Consensus 101 ---~~l~V~~a~~~ 111 (121)
T 2bz2_A 101 ---VQLKVNIARKQ 111 (121)
T ss_dssp ---CBCEEEECCSS
T ss_pred ---eEEEEEEeCCC
Confidence 35678887544
No 196
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=91.92 E-value=0.078 Score=47.06 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=47.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+....+|.|++||+..||+++.+.+..+- +.....+..+. . ..---|||.|.+.+++...+ ..+++.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G---i~~v~i~~d~~-g--~srGfaFV~F~~~e~A~~Al-~~~g~~l 110 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN---PVRVHIEIGPD-G--RVTGEADVEFATHEEAVAAM-SKDRANM 110 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC---CSEEECCCSSS-S--CSSCCCEEECSHHHHHHHHT-TCCSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEECCC-C--CCceEEEEEeCCHHHHHHHH-hhCCCEE
Confidence 45668999999999999999999998753 22333222211 1 11235999999999999888 6677655
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.20 E-value=0.38 Score=46.79 Aligned_cols=82 Identities=10% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCCceEEEecCCCCC---------CHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC
Q 009888 5 LQRTKVVIRHLPPSL---------SQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG 75 (523)
Q Consensus 5 ~~r~KVVIRrLPP~L---------TEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG 75 (523)
....+|-|.+||+.+ ||+++.+.+..+ |.|.....++. -.-|||.|.+.++...-++.++|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~--------kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVES--------KNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGG--------GTEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECC--------CCEEEEEeCCHHHHHHHHHHhCC
Confidence 356789999999998 799999998875 46776666532 24699999999999999999999
Q ss_pred CeeE-------eCCCCeeeeEEEeccCC
Q 009888 76 HVFV-------NEKGAQFKAIVEYAPSQ 96 (523)
Q Consensus 76 ~vFv-------DsKGne~~A~VEfAPYQ 96 (523)
..|. |..+.-....|.||--.
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CEEeccccccccccCCCCEEEEEEccCC
Confidence 9883 22233456788888433
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.26 E-value=0.99 Score=38.82 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=55.1
Q ss_pred EEEecCCCCCCHHHHHHHhcccC---CCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCee
Q 009888 10 VVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQF 86 (523)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~---~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~ 86 (523)
|-|++||-.++++++...|..++ .|+|-.. -| ..|||.|.+.++...-.+.++|..|.+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---tg---------G~AfV~F~~~esA~~A~~~l~G~~l~gr----- 74 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---TG---------CSAILRFINQDSAERAQKRMENEDVFGN----- 74 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---CT---------TCEEEEESSHHHHHHHHHHHTTCCSSSS-----
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---ec---------CEEEEEECCHHHHHHHHHHhcCCccCCc-----
Confidence 55999999999999877665554 2355322 22 8899999999999999999999987654
Q ss_pred eeEEEeccCCC
Q 009888 87 KAIVEYAPSQR 97 (523)
Q Consensus 87 ~A~VEfAPYQK 97 (523)
+-.|.||+...
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 46788887664
No 199
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.41 E-value=3.3 Score=34.11 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCCCCceEEEecC--CCCCC---------HHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHH
Q 009888 3 EPLQRTKVVIRHL--PPSLS---------QNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAE 71 (523)
Q Consensus 3 ~p~~r~KVVIRrL--PP~LT---------EEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d 71 (523)
.|.+..-|+|++| |+.|. |+++.+.+..+ +.|... ++.-+ ..-.-|||.|.+.++...-++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v-~i~~~-----~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKL-LLFDR-----HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEE-EEETT-----CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEE-EEecC-----CCCEEEEEEECCHHHHHHHHH
Confidence 4566677999999 44332 45565555543 345444 33211 124569999999999999999
Q ss_pred HhcCCeeEeCCCCeeeeEEEec
Q 009888 72 LLNGHVFVNEKGAQFKAIVEYA 93 (523)
Q Consensus 72 ~fdG~vFvDsKGne~~A~VEfA 93 (523)
.++|+.|- | ....|+||
T Consensus 83 ~lng~~~~---g--r~l~v~~a 99 (112)
T 2dit_A 83 TLDGRWFG---G--RQITAQAW 99 (112)
T ss_dssp HSTTCEET---T--EECEEEEC
T ss_pred HcCCCEEC---C--cEEEEEEe
Confidence 99999882 2 35677876
No 200
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=87.30 E-value=1.8 Score=39.70 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=45.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhc
Q 009888 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLN 74 (523)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fd 74 (523)
.+|.|++||+..|++++.+.+... |.|.......... ...-.-|||.|.+.+++....+..+
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~---~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH---KAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECTT---CCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECCC---CCcccEEEEEECCHHHHHHHHHhCC
Confidence 579999999999999999999874 3455444332211 1123469999999999999887653
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.72 E-value=1.9 Score=36.04 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=50.9
Q ss_pred CceEEEecC--CCCCCHHHHH----HHhcccC--CCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 7 RTKVVIRHL--PPSLSQNDLL----ALFRDHF--NDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 7 r~KVVIRrL--PP~LTEEeF~----eqL~p~~--~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
-.=|||+++ |-.|.+++.+ +.|...+ -|.|.-..-..............|||.|.+.++...-++.++|..|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 345788988 6667654332 2232222 1456544322111111123457899999999999999999999998
Q ss_pred EeCCCCeeeeEEEeccC
Q 009888 79 VNEKGAQFKAIVEYAPS 95 (523)
Q Consensus 79 vDsKGne~~A~VEfAPY 95 (523)
- | -.-.|+|++-
T Consensus 85 ~---G--R~i~v~~~~~ 96 (105)
T 3v4m_A 85 A---N--RVVVTKYCDP 96 (105)
T ss_dssp T---T--EECEEEEECH
T ss_pred C---C--CEEEEEEeCH
Confidence 3 2 2456777653
No 202
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=85.41 E-value=8.9 Score=31.91 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=54.3
Q ss_pred CCCceEEEecCCC--CC---CHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeE
Q 009888 5 LQRTKVVIRHLPP--SL---SQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 79 (523)
Q Consensus 5 ~~r~KVVIRrLPP--~L---TEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFv 79 (523)
.+..-|+|++|.. .| +++++.+.+..+ |.|....-..-... ....-..|||.|.+.++...-++.++|..|-
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~-~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGA-PDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSC-CTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCC-CCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4456789999962 23 567777777653 34544332221111 1123468999999999999999999999983
Q ss_pred eCCCCeeeeEEEeccC
Q 009888 80 NEKGAQFKAIVEYAPS 95 (523)
Q Consensus 80 DsKGne~~A~VEfAPY 95 (523)
| -.-.|+||+-
T Consensus 83 ---G--r~i~v~~a~~ 93 (105)
T 2pe8_A 83 ---G--RVVKACFYNL 93 (105)
T ss_dssp ---T--EECEEEECCH
T ss_pred ---C--cEEEEEEcCH
Confidence 2 3567777753
No 203
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.70 E-value=4.4 Score=35.45 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccc---CCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEe
Q 009888 5 LQRTKVVIRHLPPSLSQNDLLALFRDH---FNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 80 (523)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~eqL~p~---~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvD 80 (523)
.-+.+|.|+.|||.+.++-+.--+... ..+.+....|.+ ..|+|.|.+.+.+......- .|.|.+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----------~~AvItF~d~~va~rVL~k~-~H~L~~ 73 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----------CGGVLTFREPADAERVLAQA-DHELHG 73 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----------TEEEEEESSHHHHHHHHTCS-CCBSSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----------CcEEEEEcChHHHHHHhcCC-cceecC
Confidence 456899999999999987554455442 346776666644 57899999998887665541 244443
No 204
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=78.18 E-value=1.4 Score=36.56 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred cceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeeeEEEecc
Q 009888 52 RYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 52 ~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~VEfAP 94 (523)
....|||.|.+.++...-.+.++|+.|-. -.-.|+|+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~G-----r~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNG-----QPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETT-----EECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECC-----EEEEEEEcC
Confidence 35679999999999999999999998743 245678876
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=71.19 E-value=12 Score=34.15 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=40.7
Q ss_pred ceEEEecC----CCCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecC----ccc----HHHHHH
Q 009888 8 TKVVIRHL----PPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKK----PAG----VFEFAE 71 (523)
Q Consensus 8 ~KVVIRrL----PP~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn----~Ed----l~~F~d 71 (523)
++|||..| |+..||+++.+.+..+ |.|..+..+-...+.. .---|.|.|.+ +++ ....+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~--slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSAL--PLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCC--EEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCc--eeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 79999999 9999999999999864 3566666554333321 13458888886 544 555555
No 206
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=70.91 E-value=12 Score=32.02 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=48.5
Q ss_pred CCceEEEecC--CCCCC---HHHHHHHhcccCCCceeEEEeeCCCCCC--CCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 6 QRTKVVIRHL--PPSLS---QNDLLALFRDHFNDRYNWFCFRPGKSSY--KHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 6 ~r~KVVIRrL--PP~LT---EEeF~eqL~p~~~gkvdwfyFVpGK~S~--Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
+..=|+|+++ |-.|. ++++.+.+..+ |.|.-..-..-.... ....-..+||.|.+.++...-++.++|..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3445788998 33333 34444444432 345433222111110 112235799999999999999999999988
Q ss_pred EeCCCCeeeeEEEeccC
Q 009888 79 VNEKGAQFKAIVEYAPS 95 (523)
Q Consensus 79 vDsKGne~~A~VEfAPY 95 (523)
- | -.-.|+|++-
T Consensus 97 ~---G--R~i~v~~~~~ 108 (118)
T 3ue2_A 97 A---G--RKVVAEVYDQ 108 (118)
T ss_dssp T---T--EECEEEEECH
T ss_pred C---C--cEEEEEEcCh
Confidence 2 2 2456777663
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=51.25 E-value=52 Score=27.88 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=50.1
Q ss_pred CCCCceEEEecCCC--CCC----HHHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcC
Q 009888 4 PLQRTKVVIRHLPP--SLS----QNDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNG 75 (523)
Q Consensus 4 p~~r~KVVIRrLPP--~LT----EEeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG 75 (523)
|.+-.=|||+++=- .|. .+++.+.|...+. |.|.-.. ++-. .....|||.|.+.++...-++.++|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~-i~~~-----~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIY-VDKN-----SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEE-ECTT-----CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEE-EecC-----CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 44455578888733 232 2444445544442 4454332 2211 1256799999999999999999999
Q ss_pred CeeEeCCCCeeeeEEEecc
Q 009888 76 HVFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 76 ~vFvDsKGne~~A~VEfAP 94 (523)
..|- | -.-.|+|++
T Consensus 78 ~~f~---G--R~i~v~~~~ 91 (114)
T 3s6e_A 78 RWFA---G--KMITAAYVP 91 (114)
T ss_dssp CEET---T--EECEEEEEC
T ss_pred CEEC---C--EEEEEEEEc
Confidence 9983 2 255678875
No 208
>2xb2_G Regulator of nonsense transcripts 3B; EXON junction complex, nonsense-mediated mRNA decay, translation, UPF3B, hydrolase; HET: ANP; 3.40A {Homo sapiens}
Probab=48.23 E-value=7.4 Score=31.17 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=18.6
Q ss_pred HHhhhccCCCCCCccccc-ccCCc
Q 009888 401 QEKRTRNKDRPDRVVWTP-RRSDV 423 (523)
Q Consensus 401 ~e~~~rnkdrpdrgvw~p-rr~~~ 423 (523)
.++|.||||||---++-| -|+..
T Consensus 4 ~~~rirnKDRP~~qiYqPgar~r~ 27 (60)
T 2xb2_G 4 KRDRIRNKDRPAMQLYQPGARSRN 27 (60)
T ss_pred HhhhhhhcCCceeeeeCCcceecc
Confidence 468899999999999999 44444
No 209
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.32 E-value=1.1e+02 Score=25.24 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCCCCeeeeEEEecc
Q 009888 17 PSLSQNDLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP 94 (523)
Q Consensus 17 P~LTEEeF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~VEfAP 94 (523)
+.+||+++.+.+..+ +.|.....+ + ..-.-|||.|.+.++....++..++. .| .+..|+||-
T Consensus 27 ~~~te~~L~~~F~~~--G~V~~v~i~-~------~~rGfaFVeF~~~~~A~~Ai~~~~~~-----~g--~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY--GEVLNLVLS-S------KKPGTAVVEFATVKAAELAVQNEVGL-----VD--NPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTT--SCEEEEEEE-S------SSSSEEEEEESCHHHHHHHHHTCCBC-----SS--SBCEEECSS
T ss_pred CCCCHHHHHHHHHhc--CCEEEEEEc-c------CCCCEEEEEECCHHHHHHHHHhcCCC-----CC--CeEEEEEcc
Confidence 679999999999875 346554433 3 12346999999999988887774432 12 245677763
No 210
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=32.37 E-value=87 Score=25.35 Aligned_cols=52 Identities=6% Similarity=0.146 Sum_probs=30.3
Q ss_pred EEecCCCCCCHHHHHHHhcccC-C---CceeEEEeeCCCCCCCCCcceeEEEEecC
Q 009888 11 VIRHLPPSLSQNDLLALFRDHF-N---DRYNWFCFRPGKSSYKHQRYSRAYVELKK 62 (523)
Q Consensus 11 VIRrLPP~LTEEeF~eqL~p~~-~---gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn 62 (523)
.|..|.|+||.++....|+... . +.-.|.|-..=..........+..|.|.+
T Consensus 9 ~~~~i~~GmTk~qV~~lLG~P~~~~~f~~~~W~Yv~~~~~g~~~~~~~~l~V~Fd~ 64 (88)
T 2yh9_A 9 DVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNS 64 (88)
T ss_dssp -CTTCCTTCBHHHHHHHHCSCSEECCTTCSEEEEECCSCTTCCSSSCCEEEEEECT
T ss_pred HHHhccCCCCHHHHHHHcCCCcccccccCCeEEEEEEeecCCCCcEEEEEEEEEcC
Confidence 3678999999999999998532 1 12245332111111123445667777764
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.89 E-value=37 Score=29.52 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=47.9
Q ss_pred ceEEEecCCCCC-CHH----HHHHHhcccCCCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCeeEeCC
Q 009888 8 TKVVIRHLPPSL-SQN----DLLALFRDHFNDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 82 (523)
Q Consensus 8 ~KVVIRrLPP~L-TEE----eF~eqL~p~~~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 82 (523)
.-|+|-+||+.+ +.+ +|.+.+... +.-+.|.+| + .+-|+-|+|.++++...-+..+++..|...+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~l-k--------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYF-K--------SFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEE-T--------TTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeec-C--------cceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 568999998865 433 444444432 333455544 1 2459999999999999999999999998764
Q ss_pred CCee
Q 009888 83 GAQF 86 (523)
Q Consensus 83 Gne~ 86 (523)
=..|
T Consensus 76 ~r~Y 79 (104)
T 1wey_A 76 MKLY 79 (104)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 3333
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.50 E-value=58 Score=27.87 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=41.4
Q ss_pred CCceEEEecCCCCCCH-----HHHHHHhcccCC--CceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 6 QRTKVVIRHLPPSLSQ-----NDLLALFRDHFN--DRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 6 ~r~KVVIRrLPP~LTE-----EeF~eqL~p~~~--gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
|.--|||..||+...| ++|...|-..+. |.+.-..|+-++ +++.|.+.+....-++ ++|..+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----------EEEEEcChHHHHHHHh-cCCeee
Confidence 3456899999976322 223333333331 356666777665 9999999999988887 888764
No 213
>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} SCOP: d.98.1.0 PDB: 3gmy_A
Probab=21.11 E-value=1.3e+02 Score=27.87 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhcccCCCceeEE---------------EeeCCCCCCCCCcceeEEEEecC
Q 009888 16 PPSLSQNDLLALFRDHFNDRYNWF---------------CFRPGKSSYKHQRYSRAYVELKK 62 (523)
Q Consensus 16 PP~LTEEeF~eqL~p~~~gkvdwf---------------yFVpGK~S~Kp~~ySRAYI~Fkn 62 (523)
--+||++++|+.|...-+ +.|. |+..++.+. .++-|||+|.+
T Consensus 86 t~GMT~aQV~A~vg~~~c--~~~~e~yp~~ps~~G~~~~y~c~~~~~~---~~~~A~f~FtD 142 (154)
T 3gmx_B 86 QTGMTEAQFWAAVPSDTC--SALAEQYPNWPATNGNLREYVCPSKAER---FAPSAYFTFTD 142 (154)
T ss_dssp CTTCBHHHHHHHSCGGGC--EEEEEECTTTTSCTTCEEEEEEESSSST---TCCEEEEEEET
T ss_pred hccCcHHHHHHHhCCCcc--eehhhhcCCCcCcCCCeEEEEecCcccc---cCCceEEEEeC
Confidence 347899999999965321 2222 344444332 46789999976
No 214
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.41 E-value=1.1e+02 Score=25.81 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=42.6
Q ss_pred CceEEEecCC----CCCCHHHHHHHhcccC--CCceeEEEeeCCCCCCCCCcceeEEEEecCcccHHHHHHHhcCCee
Q 009888 7 RTKVVIRHLP----PSLSQNDLLALFRDHF--NDRYNWFCFRPGKSSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 78 (523)
Q Consensus 7 r~KVVIRrLP----P~LTEEeF~eqL~p~~--~gkvdwfyFVpGK~S~Kp~~ySRAYI~Fkn~Edl~~F~d~fdG~vF 78 (523)
.--|||..+| .+.-.++|...|-..+ -|.+.-..|+-++ +++.|.+.+....-++ ++|..+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----------EEEEECChHHHHHHHh-cCCeEe
Confidence 4568889988 3444555555454444 2467677777655 8999999999888887 998853
Done!