BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009890
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 157/320 (49%), Gaps = 29/320 (9%)
Query: 35 VIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR 94
++ G+ V+ + IHYPR E W I+ K G + I YVFWN HEP +Y+F G+
Sbjct: 16 LLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFAGQ 75
Query: 95 YDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRF 154
D+ F +L E G Y +R GPYVCAEW GG P WL I+ R + + ++ F
Sbjct: 76 KDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVKLF 135
Query: 155 TAKIVDMMKQEKLYASQGGPIILSQIENEYG--NIDSAYGAAGKSYIKWAAGMALSLDTG 212
++ + L S+GG II Q+ENEYG ID Y + + +K AG TG
Sbjct: 136 LNEVGKQLAD--LQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVK-QAGF-----TG 187
Query: 213 VPWVMCQ-----QSDAPDPIINTCN---GFYCD-QFTPNSNNKPKM---WTENWSGWFLS 260
VP C +++A D ++ T N G D QF +P +E WSGWF
Sbjct: 188 VPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDH 247
Query: 261 FGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPF-----ISTSYDYD 315
+G R E+L R +F + Y HGGT+F G F TSYDYD
Sbjct: 248 WGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYDYD 306
Query: 316 APLDEYGLIRQPKWGHLKDL 335
AP++E G + PK+ +++L
Sbjct: 307 APINESGKV-TPKYLEVRNL 325
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 153/308 (49%), Gaps = 27/308 (8%)
Query: 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY 95
+ GK ++SG+IHY R PE W + K G + +ETYV WNLHEP +++FEG
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFT 155
DL KF+++ + GLYA +R P++CAEW FGG P WL ++ R+ + + + R+
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 156 AKIVDMMKQEKLYASQGGPIILSQIENEYGNI--DSAYGAAGKSYIKWAAGMALSLDTGV 213
+++ + GG I++ Q+ENEYG+ D AY A + ++ +
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDG 188
Query: 214 PWVMCQQSDA--PDPIINTCN-------GFYCDQ--FTPNSNNKPKMWTENWSGWFLSFG 262
PW ++ + + T N F Q F + P M E W GWF +
Sbjct: 189 PWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWK 248
Query: 263 GAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGG--------PFISTSYDY 314
+ R ++LA AV ++G N YM+HGGTNF +G P + TSYDY
Sbjct: 249 EPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLDLPQV-TSYDY 305
Query: 315 DAPLDEYG 322
DA LDE G
Sbjct: 306 DALLDEEG 313
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 161/351 (45%), Gaps = 36/351 (10%)
Query: 27 VTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR 86
+ Y + + G+ ISGSIHY R W D + K K GL+ I+TYV WN HEP
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 87 NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEP 146
QY F +D+ F++L E GL LR GPY+CAEW GG P WL I R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 147 FKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGM- 205
+ A + ++ ++ MK L GGP+I Q+ENEYG +Y A Y+++
Sbjct: 131 YLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQKRF 184
Query: 206 --ALSLDTGVPWVMCQQSDAPDPIINTC---NGFY-----------CDQFTPNSNNKPK- 248
L D V+ +D C G Y D F +PK
Sbjct: 185 RHHLGDD-----VVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKG 239
Query: 249 --MWTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGG- 305
+ +E ++GW +G E +A ++ RG + N YM+ GGTNF +G
Sbjct: 240 PLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGAN 298
Query: 306 -PFIS--TSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTY 353
P+ + TSYDYDAPL E G + + + + K K+ E + + P +
Sbjct: 299 SPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKF 349
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 155/361 (42%), Gaps = 46/361 (12%)
Query: 27 VTYDHRAVVIGGKRRVLISGSIH-YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV 85
VT+D ++ + G+R ++ SG +H Y ++ D+ +K K G + + YV W L E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 86 RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNE 145
Y+ EG +DL F EAG+Y R GPY+ AE + GGFP WL + GI RT +E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 146 PFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAY-GAAGKSYIKWAAG 204
+ + + I + + ++ + GGPIIL Q ENEY Y G SY+++
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 205 MALSLDTGVPWVM----CQQSDAPDPIINTCN---------GFYC--------------- 236
A VP++ +AP + GF C
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 237 ----DQFTPNSNNKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQR-----GGTF 287
+Q +P++ P E G F +GG + L R F + G F
Sbjct: 243 HTSHEQQSPST---PYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAF 299
Query: 288 QNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALV 347
N YM GGTN+ G P TSYDY + + E I + K+ LK L K+ LV
Sbjct: 300 LNLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLV 358
Query: 348 A 348
A
Sbjct: 359 A 359
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 156/358 (43%), Gaps = 39/358 (10%)
Query: 27 VTYDHRAVVIGGKRRVLISGSIHYPR-STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV 85
VT+D ++ + G+R V+ SG +H R P ++ D+ K K G + + YV W L E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 86 RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNE 145
++ +G + L F + +AG+Y R GPY+ AE + GGFP WL + G + RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 146 PFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGM 205
+ + A I ++ + ++ + GGP+IL Q ENEY K Y+++
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 206 ALSLDTGVPWV----MCQQSDAPDPIINTCNGFYCDQFTPNSN-NKPKMWTEN-----WS 255
A + VP + + AP + + + + D + + P W +N W
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 256 GWFLSFGGAVPYRPVEDLAFAVARF---------------FQR---------GGTFQNYY 291
L+ + P+ VE A F F+R G T N Y
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIY 322
Query: 292 MYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVAT 349
M GGTN+ G P TSYDY A + E I + K+ LK + +K+ + AT
Sbjct: 323 MTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYITAT 379
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 74 ETYVFWNLHEPVRNQYNFEGRYDLVKFV----KLVAEAGLYAHLRIGPYVCAEWNFGGFP 129
E + W+ EP R Q+ F G LV F KL+ L H ++ P
Sbjct: 47 ENSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHSQL-------------P 93
Query: 130 LWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS 189
W+ I TD + ++ ++ K K+YA +L++I NE G++ +
Sbjct: 94 GWVSSI------TDKNTLISVLKNHITTVMTRYKG-KIYAWD----VLNEIFNEDGSLRN 142
Query: 190 A--YGAAGKSYIKWAAGMALSLD 210
+ Y G+ Y++ A A S+D
Sbjct: 143 SVFYNVIGEDYVRIAFETARSVD 165
>pdb|3ZDJ|A Chain A, Ancestral (enca) Beta-lactamase Class A
pdb|3ZDJ|B Chain B, Ancestral (enca) Beta-lactamase Class A
Length = 263
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 331 HLKDLHKAIKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTN 382
HL D +LC AA+ +D T +L L AT+ G +AFL NIG N
Sbjct: 87 HLADGMTVAELCAAAITMSDNTAANL---LLATI--GGPAGLTAFLRNIGDN 133
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 431 LQVAADSSDAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKA 489
L+ D + IG GW+Y P+G + A K LL+++N ++ + Y +T +A
Sbjct: 312 LEQGTDENGPIGHGWTYSAHPIGAAAGVANLK--LLDELNLVSNAGEVGAYLNATXAEA 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,390,990
Number of Sequences: 62578
Number of extensions: 796065
Number of successful extensions: 1747
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 19
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)